Citrus Sinensis ID: 000174
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1931 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SP32 | 1909 | Endoribonuclease Dicer ho | yes | no | 0.958 | 0.969 | 0.734 | 0.0 | |
| Q8LMR2 | 1883 | Endoribonuclease Dicer ho | yes | no | 0.844 | 0.866 | 0.772 | 0.0 | |
| Q9LXW7 | 1580 | Endoribonuclease Dicer ho | no | no | 0.350 | 0.428 | 0.35 | 1e-106 | |
| Q10HL3 | 1410 | Endoribonuclease Dicer ho | no | no | 0.324 | 0.444 | 0.352 | 1e-105 | |
| Q7XD96 | 1637 | Endoribonuclease Dicer ho | no | no | 0.287 | 0.339 | 0.376 | 1e-104 | |
| Q5N870 | 1651 | Endoribonuclease Dicer ho | no | no | 0.349 | 0.408 | 0.332 | 1e-104 | |
| Q3EBC8 | 1388 | Endoribonuclease Dicer ho | no | no | 0.321 | 0.446 | 0.374 | 1e-102 | |
| A7LFZ6 | 1657 | Endoribonuclease Dicer ho | no | no | 0.338 | 0.394 | 0.328 | 7e-95 | |
| Q69LX2 | 1377 | Endoribonuclease Dicer ho | no | no | 0.309 | 0.434 | 0.326 | 4e-91 | |
| P84634 | 1702 | Dicer-like protein 4 OS=A | no | no | 0.342 | 0.388 | 0.323 | 3e-86 |
| >sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 2898 bits (7513), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1461/1988 (73%), Positives = 1643/1988 (82%), Gaps = 138/1988 (6%)
Query: 1 MEGETRVSDIVGGGESNQSSYWLDACEDI---LIDEFVN-FDTSVVQDSVDNTSNQDSLS 56
ME E R + I + SYWLDACEDI LID+ V+ FD S V +V+ +++++ +
Sbjct: 3 MEDEPREATI-------KPSYWLDACEDISCDLIDDLVSEFDPSSV--AVNESTDENGVI 53
Query: 57 NDFFGGIDHILDSIKNGSGLPNSNGNLLKNGSEDSTGGENHQAEGLILLSNNGSDKDGVD 116
NDFFGGIDHILDSIKNG GLPN NG D+
Sbjct: 54 NDFFGGIDHILDSIKNGGGLPN-------NGVSDTNS----------------------- 83
Query: 117 RKRKLENCENVNGYLVNGKAGGRLSDHFTKENGVHRDNGNNDHEASRIRDFDSE--DRFS 174
+N V + ++ KENG+ ++ G D +F E D+
Sbjct: 84 ---------QINEVTVTPQV---IAKETVKENGLQKNGGKRD-------EFSKEEGDKDR 124
Query: 175 KRARVSVCKNE-SQYSSRGQYCSS-DKDRVFGRKRLRDLDDIGRRDRDPMRRREHYNGSS 232
KRARV ++E S S RG +S + DR RKR R+ D+ G ++RE N
Sbjct: 125 KRARVCSYQSERSNLSGRGHVNNSREGDRFMNRKRTRNWDEAGNNK----KKRECNN--- 177
Query: 233 RKDVRDKDFRDREPRGYWERDRLGSNGMVFRLGSWEADHNRAGKEANGINQECNGKV--- 289
+D RDRE RGYWERD++GSN +V+R G+WEADH R K+ +G N+EC+ K
Sbjct: 178 ----YRRDGRDREVRGYWERDKVGSNELVYRSGTWEADHERDVKKVSGGNRECDVKAEEN 233
Query: 290 -GKKSEAKEKMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQ 348
K E KEK+ EEQAR YQLDVLEQAK KNTIAFLETGAGKTLIA+LLI+S+ DL Q
Sbjct: 234 KSKPEERKEKVVEEQARRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQ 293
Query: 349 NKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVM 408
N+KML+VFLVPKVPLVYQQAEVIR QT + VGHYCGEMGQDFWD++RWQREF++KQVLVM
Sbjct: 294 NRKMLSVFLVPKVPLVYQQAEVIRNQTCFQVGHYCGEMGQDFWDSRRWQREFESKQVLVM 353
Query: 409 TAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTA 468
TAQILLNILRHSII+ME I+LLILDECHHAVKKHPYSLVMSEFYHTT K+KRP++FGMTA
Sbjct: 354 TAQILLNILRHSIIRMETIDLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPAIFGMTA 413
Query: 469 SPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWS 528
SPVNLKGVSSQVDCAIKI NLE+KLDS VCTIKDRKELEKHVPMPSE+VVEYDKAA++WS
Sbjct: 414 SPVNLKGVSSQVDCAIKIRNLETKLDSTVCTIKDRKELEKHVPMPSEIVVEYDKAATMWS 473
Query: 529 LHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQK 588
LHE +KQM AVEEAAQ+SSR+SKWQFMGARDAGAK+ELRQVYGVSERTESDGAANLI K
Sbjct: 474 LHETIKQMIAAVEEAAQASSRKSKWQFMGARDAGAKDELRQVYGVSERTESDGAANLIHK 533
Query: 589 LRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEG 648
LRAINY L ELGQWCAYKV QSFL+ALQ+DER N+Q+DVKFQESYLS+VVSLLQCEL+EG
Sbjct: 534 LRAINYTLAELGQWCAYKVGQSFLSALQSDERVNFQVDVKFQESYLSEVVSLLQCELLEG 593
Query: 649 AVSKKDAKVV-DSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQ 707
A ++K A V ENG +E+EEGEL D VVSGGEHVD +IGAAVADGKVTPKVQ
Sbjct: 594 AAAEKVAAEVGKPENG---NAHDEMEEGELPDDPVVSGGEHVDEVIGAAVADGKVTPKVQ 650
Query: 708 SLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTF 767
SLIK+LLKYQHT DFRAI+FVERVVAALVLPKVFAELPSLSF++ AS+IGHNNSQEM++
Sbjct: 651 SLIKLLLKYQHTADFRAIVFVERVVAALVLPKVFAELPSLSFIRCASMIGHNNSQEMKSS 710
Query: 768 QMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827
QMQ+TI+KFRDG VTLLVATSVAEEGLDIRQCNVV+RFDLAKTVLAYIQSRGRARKPGSD
Sbjct: 711 QMQDTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARKPGSD 770
Query: 828 YILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAVPGTVYQVES 887
YILM+ERGN+SHA FLRNARNSEETLRKEAIERTDLSHLKDTSRLIS+DAVPGTVY+VE+
Sbjct: 771 YILMVERGNVSHAAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISIDAVPGTVYKVEA 830
Query: 888 TGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFE 947
TGA+VSLNSAVGL+HFYCSQLP DRY+ILRPEF ME+HEKPGG TEYSC+LQLPCNAPFE
Sbjct: 831 TGAMVSLNSAVGLVHFYCSQLPGDRYAILRPEFSMEKHEKPGGHTEYSCRLQLPCNAPFE 890
Query: 948 KLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEQQEKVDQNDEGEPLPGT 1007
LEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSG+ EK DQ+DEGEP+PGT
Sbjct: 891 ILEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGQDAEKADQDDEGEPVPGT 950
Query: 1008 ARHREFYPEGVADILQGEWILSGRDGCTGSKLFHLFMYTVKCVNNGISKDPFLTQVSDFA 1067
ARHREFYPEGVAD+L+GEW+ SG++ C SKLFHL+MY V+CV+ G SKDPFL++VS+FA
Sbjct: 951 ARHREFYPEGVADVLKGEWVSSGKEVCESSKLFHLYMYNVRCVDFGSSKDPFLSEVSEFA 1010
Query: 1068 VLFSSELDAE--------------------------------LASLKNFHVRLMSIVLDV 1095
+LF +ELDAE L+SLK FHVRLMSIVLDV
Sbjct: 1011 ILFGNELDAEVLSMSMDLYVARAMITKASLAFKGSLDITENQLSSLKKFHVRLMSIVLDV 1070
Query: 1096 DVEPYTTPWDPAKAYLFVPVVSDKSVDPMNELDWDLVEKITKTDAWTNPLQRARPDVYLG 1155
DVEP TTPWDPAKAYLFVPV + S++P+ ++W+LVEKITKT AW NPLQRARPDVYLG
Sbjct: 1071 DVEPSTTPWDPAKAYLFVPVTDNTSMEPIKGINWELVEKITKTTAWDNPLQRARPDVYLG 1130
Query: 1156 TNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAIAQFDVVKASGLVPDREAMQIH- 1214
TNERTLGGDRREYGFGKLRH + FGQKSHPTYGIRGA+A FDVV+ASGL+P R+A +
Sbjct: 1131 TNERTLGGDRREYGFGKLRHNIVFGQKSHPTYGIRGAVASFDVVRASGLLPVRDAFEKEV 1190
Query: 1215 NADMPTGKLMMADSCANAGDLEGRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGPL 1274
D+ GKLMMAD C A DL G+IVTAAHSGKRFYV+SI Y+M+AE+SFPRKEGYLGPL
Sbjct: 1191 EEDLSKGKLMMADGCMVAEDLIGKIVTAAHSGKRFYVDSICYDMSAETSFPRKEGYLGPL 1250
Query: 1275 EYSSYADYYKQKYGVELIFKKQPLIRGRGVSYCKNLLSPRFEHSEEQEGEGEEILDKTYY 1334
EY++YADYYKQKYGV+L K+QPLI+GRGVSYCKNLLSPRF EQ GE E +LDKTYY
Sbjct: 1251 EYNTYADYYKQKYGVDLNCKQQPLIKGRGVSYCKNLLSPRF----EQSGESETVLDKTYY 1306
Query: 1335 VFLPPELCFIHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKDKINYPVPASKILEALTAA 1394
VFLPPELC +HPL GSL+RGAQRLPSIMRRVESMLLA+QLK+ I+YP+P SKILEALTAA
Sbjct: 1307 VFLPPELCVVHPLSGSLIRGAQRLPSIMRRVESMLLAVQLKNLISYPIPTSKILEALTAA 1366
Query: 1395 SCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKG 1454
SCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSN+VLYQ+AL KG
Sbjct: 1367 SCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKG 1426
Query: 1455 LQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDD 1514
LQSYIQADRFAPSRW+APGV PVFDEDTKDG SS FD+E+ K +++N + +ED +
Sbjct: 1427 LQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDEEQ-----KPVSEENSDVFEDGE 1481
Query: 1515 MEDGELEGDSSSYRVLSSKTLADVVEALIGVYYVEGGKDAANHLMKWIGIQVESDPEEVG 1574
MEDGELEGD SSYRVLSSKTLADVVEALIGVYYVEGGK AANHLMKWIGI VE DP+EV
Sbjct: 1482 MEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVEGGKIAANHLMKWIGIHVEDDPDEVD 1541
Query: 1575 CPSRPACVPESVLRSVDFHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGD 1634
+ VPESVL+S+DF LE ALK +FK++GLLVEAITHASRPSSGVSCYQRLEFVGD
Sbjct: 1542 GTLKNVNVPESVLKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGD 1601
Query: 1635 AVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQI 1694
AVLDHLIT+HLFF+YT+LPPGRLTDLRAAAVNNENFARVAVKHKLH++LRHGSSAL++QI
Sbjct: 1602 AVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQI 1661
Query: 1695 RDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLL 1754
R+FVKEV E KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSG+DT+ W+VFQPLL
Sbjct: 1662 REFVKEVQTESSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLL 1721
Query: 1755 DPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNLATVEVYIDGVQVGVAQNPQKKM 1814
PMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGN ATVEV+IDGVQVGVAQNPQKKM
Sbjct: 1722 QPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKM 1781
Query: 1815 AQKLAARNALAVLKEKETAEAKEKGDENGK-----------KRKNGTQTFTRQTLNDICL 1863
AQKLAARNALA LKEKE AE+KEK NG +KNG Q FTRQTLNDICL
Sbjct: 1782 AQKLAARNALAALKEKEIAESKEKHINNGNAGEDQGENENGNKKNGHQPFTRQTLNDICL 1841
Query: 1864 RRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLL 1923
R+NWPMP YRCV+EGGPAHAKRFT+ VRVNT+D+GWTDEC+GEPMPSVKKAKDSAAVLLL
Sbjct: 1842 RKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLL 1901
Query: 1924 ELLNKWYS 1931
ELLNK +S
Sbjct: 1902 ELLNKTFS 1909
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Ribonuclease (RNase) III involved in RNA-mediated post-transcriptional gene silencing (PTGS). Functions in the microRNAs (miRNAs) biogenesis pathway by cleaving primary miRNAs (pri-miRNAs) and precursor miRNAs (pre-miRNAs). Functions with DRB1/HYL1 and SERRATE proteins for accurate pri-miRNAs to miRNAs processing. Indirectly involved in the production of trans-acting small interfering RNAs (ta-siRNAs) derived from the TAS1, TAS2 or TAS3 endogenous transcripts by participating in the production of their initiating miRNAs. Involved in the processing of natural siRNAs (nat-siRNAs, derived from cis-natural antisense transcripts) by cleaving 24 nucleotide nat-siRNAs into 21 nucleotide nat-siRNAs. Can produce RDR6-dependent endogenous ta-siRNAs derived from TAS1 and TAS2. Required for the production of 30-40 nucleotide bacterial-induced long siRNAs (lsiRNA). Acts redundantly with DICER-LIKE 3 (DCL3) to promote flowering via repression of FLOWERING LOCUS C (FLC). Represses antiviral RNA silencing through negative regulation of the expression of DCL4 and DCL3. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 1EC: .EC: 2EC: 6EC: .EC: - |
| >sp|Q8LMR2|DCL1_ORYSJ Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica GN=DCL1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 2710 bits (7025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1331/1723 (77%), Positives = 1474/1723 (85%), Gaps = 92/1723 (5%)
Query: 244 REPRGYWERDRLGSNGMVFRLGSWEADHNRAGKEA---NGINQECNGKVGKKSEAKEKMP 300
RE RG+WERDR G MVFR G+WE + +R K A +G + E + + A+ + P
Sbjct: 204 REARGFWERDRGGK--MVFRSGTWEQESDREAKRARTQDGGSMEKKAEADRMGAAQREKP 261
Query: 301 --EEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV 358
EE+AR YQL+VLEQAK +NTIAFLETGAGKTLIAVLLI+S+C+ + ++NKKMLAVFLV
Sbjct: 262 VAEERARQYQLEVLEQAKSRNTIAFLETGAGKTLIAVLLIKSVCDKMLKENKKMLAVFLV 321
Query: 359 PKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILR 418
PKVPLVYQ VLVMTAQILLNILR
Sbjct: 322 PKVPLVYQ--------------------------------------VLVMTAQILLNILR 343
Query: 419 HSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSS 478
HSIIKM+AI+LLILDECHHAVKKHPYSLVMSEFYHTT KEKRP+VFGMTASPVNLKGV+S
Sbjct: 344 HSIIKMDAIHLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPAVFGMTASPVNLKGVTS 403
Query: 479 QVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEV 538
Q DCAIKI NLESKLDSVVCTIKDRKELEKHVPMP EVVV+YDKAA+LWSLHEQ+KQME
Sbjct: 404 QEDCAIKIRNLESKLDSVVCTIKDRKELEKHVPMPLEVVVQYDKAATLWSLHEQIKQMES 463
Query: 539 AVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGE 598
VEEAA SSS+R+KWQFMGARDAG+++ELR VYGVSERTESDGAANLIQKLRAINYALGE
Sbjct: 464 TVEEAALSSSKRTKWQFMGARDAGSRDELRLVYGVSERTESDGAANLIQKLRAINYALGE 523
Query: 599 LGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVV 658
LGQWCAYKVAQSFLTALQNDERANYQ+DVKFQESYL KVV LL C+L EGA K + V
Sbjct: 524 LGQWCAYKVAQSFLTALQNDERANYQVDVKFQESYLKKVVDLLHCQLTEGAAMKSETSDV 583
Query: 659 DSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQH 718
+ +N + TN++EEGEL DSH GEHVD +IGAAVADGKVTP+VQ+LIKILLKYQH
Sbjct: 584 EMQNT-EKHNTNDLEEGELPDSH----GEHVDEVIGAAVADGKVTPRVQALIKILLKYQH 638
Query: 719 TEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRD 778
TEDFRAIIFVERVV ALVLPKV AELPSLSF++ ASLIGHNN+QEMR QMQ+TI+KFRD
Sbjct: 639 TEDFRAIIFVERVVTALVLPKVLAELPSLSFIRCASLIGHNNNQEMRACQMQDTISKFRD 698
Query: 779 GRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIERGNLS 838
GRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILM+ERGN+S
Sbjct: 699 GRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMLERGNIS 758
Query: 839 HATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAVPGTVYQVESTGAVVSLNSAV 898
H TFLRNARNSEETLRKEA+ERTDLSHL TS L VD PG++YQVESTGAVVSLNSAV
Sbjct: 759 HETFLRNARNSEETLRKEAMERTDLSHLDGTSVLSPVDTSPGSMYQVESTGAVVSLNSAV 818
Query: 899 GLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFEKLEGPVCSSMR 958
GLIHFYCSQLPSDRYSIL PEFIM+++EKPGG EYSCKLQLPCNAPFEKLEGP+CSS+R
Sbjct: 819 GLIHFYCSQLPSDRYSILHPEFIMQKYEKPGGSVEYSCKLQLPCNAPFEKLEGPICSSIR 878
Query: 959 LAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEQQEKVDQNDEGEPLPGTARHREFYPEGV 1018
LAQQAVCLAACKKLHEMGAFTD LLPD+GSGE EK +QNDEGEPLPGTARHREFYPEGV
Sbjct: 879 LAQQAVCLAACKKLHEMGAFTDTLLPDRGSGE-GEKTEQNDEGEPLPGTARHREFYPEGV 937
Query: 1019 ADILQGEWILSGRDGCTGSKLFHLFMYTVKCVNNGISKDPFLTQVSDFAVLFSSELDAEL 1078
ADIL+GEWILSGRDG S+ L+MY+V CVN G SKDPF+TQ+S+FA++F +ELDAE+
Sbjct: 938 ADILRGEWILSGRDGYQNSQFIKLYMYSVNCVNVGTSKDPFVTQLSNFAIIFGNELDAEV 997
Query: 1079 AS--------------------------------LKNFHVRLMSIVLDVDVEPYTTPWDP 1106
S LK+FHVRLMSIVLDVDV+P TTPWDP
Sbjct: 998 LSTTMDLFVARTMITKASLVFRGRIEITESQLVLLKSFHVRLMSIVLDVDVDPSTTPWDP 1057
Query: 1107 AKAYLFVPVVSDKSVDPMNELDWDLVEKITKTDAWTNPLQRARPDVYLGTNERTLGGDRR 1166
AKAYLFVPV ++K DP+ E+DW LV I TDAW NPLQRARPDVYLGTNERTLGGDRR
Sbjct: 1058 AKAYLFVPVGAEKCTDPLREIDWTLVNNIVNTDAWNNPLQRARPDVYLGTNERTLGGDRR 1117
Query: 1167 EYGFGKLRHGMAFGQKSHPTYGIRGAIAQFDVVKASGLVPDREAMQIHNADMPT-GKLMM 1225
EYGFGKLRHG AFGQK+HPTYGIRGAIA+FD+VKASGLVP R+ + H +D GKL M
Sbjct: 1118 EYGFGKLRHGTAFGQKAHPTYGIRGAIAEFDIVKASGLVPARD--RGHFSDYQNQGKLFM 1175
Query: 1226 ADSCANAGDLEGRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQ 1285
ADSC NA DL G +VTAAHSGKRFYV+ I Y M AE+SFPRKEGYLGPLEYSSYADYYKQ
Sbjct: 1176 ADSCWNAKDLAGMVVTAAHSGKRFYVDCICYNMNAENSFPRKEGYLGPLEYSSYADYYKQ 1235
Query: 1286 KYGVELIFKKQPLIRGRGVSYCKNLLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIH 1345
KYGVELI++KQPLIR RGVSYCKNLLSPRFEHS+ +EG+ E LDKTYYV+LPPELC +H
Sbjct: 1236 KYGVELIYRKQPLIRARGVSYCKNLLSPRFEHSDAREGDFSENLDKTYYVYLPPELCLVH 1295
Query: 1346 PLPGSLVRGAQRLPSIMRRVESMLLAIQLKDKINYPVPASKILEALTAASCQETFCYERA 1405
PLPGSLVRGAQRLPSIMRRVESMLLA+QLKD I+YPVPA+KILEALTAASCQET CYERA
Sbjct: 1296 PLPGSLVRGAQRLPSIMRRVESMLLAVQLKDIIDYPVPATKILEALTAASCQETLCYERA 1355
Query: 1406 ELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQADRFA 1465
ELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSN+VLYQYAL+K LQSYIQADRFA
Sbjct: 1356 ELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALNKTLQSYIQADRFA 1415
Query: 1466 PSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSS 1525
PSRWAAPGVLPVFDE++++ + S+FD+E + E + ++Y++Y D+ EDGE+EGDSS
Sbjct: 1416 PSRWAAPGVLPVFDEESREYEPSIFDEESTGCELQ---KESYDDYADNMQEDGEIEGDSS 1472
Query: 1526 SYRVLSSKTLADVVEALIGVYYVEGGKDAANHLMKWIGIQVESDPEEVGCPSRPACVPES 1585
YRVLSSKTLADVVEALIGVYYV GGK AANHLMKWIGI E DPEE+ P +P +PES
Sbjct: 1473 CYRVLSSKTLADVVEALIGVYYVAGGKIAANHLMKWIGIHAELDPEEIP-PPKPYDIPES 1531
Query: 1586 VLRSVDFHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHL 1645
++RS++F L+ L I+F+++GLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLIT+HL
Sbjct: 1532 IMRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHL 1591
Query: 1646 FFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEEL 1705
FF+YT+LPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSAL+ QIR+FVK+V EEL
Sbjct: 1592 FFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEEL 1651
Query: 1706 LKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMVTPETLPM 1765
LKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSG DTSVVW+VFQPLL PMVTPETLPM
Sbjct: 1652 LKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETLPM 1711
Query: 1766 HPVRELQERCQQQAEGLEYKASRSGNLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALA 1825
HPVRELQERCQQQAEGLEYKASR+GN+ATVEV++DGVQ+GVAQNPQKKMAQKLAARNAL
Sbjct: 1712 HPVRELQERCQQQAEGLEYKASRAGNIATVEVFVDGVQIGVAQNPQKKMAQKLAARNALV 1771
Query: 1826 VLKEKETAEAKEKGDENGKKRKNGTQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKR 1885
VLKEKETA KE DE ++KNG Q FTRQTLNDICLRR WPMP YRCV EGGPAHAKR
Sbjct: 1772 VLKEKETATKKE--DERDGEKKNGAQMFTRQTLNDICLRRQWPMPQYRCVNEGGPAHAKR 1829
Query: 1886 FTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928
F Y+VRVNT+D+GWTDEC+GEPMPSVKKAKDSAAVLLLELLN+
Sbjct: 1830 FVYSVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNR 1872
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Involved in the RNA silencing pathway. Cleaves double-stranded RNA to produce microRNAs (miRNAs) of 21-24 nucleotides which target the selective destruction of complementary RNAs. Regulates by this way the development of the plant. May not be involved in small interfering RNAs (siRNAs) production. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|Q9LXW7|DCL3_ARATH Endoribonuclease Dicer homolog 3 OS=Arabidopsis thaliana GN=DCL3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust.
Identities = 266/760 (35%), Positives = 393/760 (51%), Gaps = 83/760 (10%)
Query: 1220 TGKLMMADSCANAGDLEGRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSY 1279
T + A++ ++ LE +V A H+G+ + + + +A S F + G Y++Y
Sbjct: 835 TNLIHFANASSDKNSLEELVVIAIHTGRIYSIVEAVSDSSAMSPF-EVDASSG---YATY 890
Query: 1280 ADYYKQKYGVELIFKKQPLIRGRGVSYCKNLLSPRFEH----SEEQEGEGEEILDKTYYV 1335
A+Y+ +KYG+ L QPL++ + + NLL E +E + G + +
Sbjct: 891 AEYFNKKYGIVLAHPNQPLMKLKQSHHAHNLLVDFNEEMVVKTEPKAGNVRK-RKPNIHA 949
Query: 1336 FLPPELCFIHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKDKI-----NYPVPASKILEA 1390
LPPEL +P ++++ LPS+M R+ES++LA QL+++I N+ + ++ ILEA
Sbjct: 950 HLPPELLARIDVPRAVLKSIYLLPSVMHRLESLMLASQLREEIDCSIDNFSISSTSILEA 1009
Query: 1391 LTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYA 1450
+T +C E+F ER ELLGD+ LK+V S LFLKYP K EGQL+R RQ ++SN L++
Sbjct: 1010 VTTLTCPESFSMERLELLGDSVLKYVASCHLFLKYPDKDEGQLSRQRQSIISNSNLHRLT 1069
Query: 1451 LSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEY 1510
S+ LQ YI+ F P RW APG +F K G D + + K T
Sbjct: 1070 TSRKLQGYIRNGAFEPRRWTAPGQFSLFPVPCKCG----IDTREVPLDPKFFT------- 1118
Query: 1511 EDDDMEDGELEGDSSSYRVLSSKTLADVVEALIGVYYVEGGKDAANHLMKWIGIQVESDP 1570
E+ ++ G + +R + SK+++D EALIG YYV GG A+ H+MKW+GI V+ DP
Sbjct: 1119 ENMTIKIG--KSCDMGHRWVVSKSVSDCAEALIGAYYVSGGLSASLHMMKWLGIDVDFDP 1176
Query: 1571 EEVGCPSRPACVPESVLRSVDFHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLE 1630
V + + + + LE ++ +F + LL EAITH+S S Y+RLE
Sbjct: 1177 NLVVEAINRVSLRCYIPKEDELIELERKIQHEFSAKFLLKEAITHSSLRES--YSYERLE 1234
Query: 1631 FVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSAL 1690
F+GD+VLD LIT+HLF +Y PG +TDLR+A VNNENFA+VAVK+ LH HL+ ++ L
Sbjct: 1235 FLGDSVLDFLITRHLFNTYEQTGPGEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVL 1294
Query: 1691 DRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVF 1750
+ QI D+ L KP + + PK LGD+VESIAGA+ +D+ D VW+VF
Sbjct: 1295 ETQINDY----LMSFQKPDETGRSIPSIQGPKALGDVVESIAGALLIDTRLDLDQVWRVF 1350
Query: 1751 QPLLDPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSG--NLATVEVYIDGVQV-GVA 1807
+PLL P+VTP+ L + P REL E C K S G AT+++ +D V + G
Sbjct: 1351 EPLLSPLVTPDKLQLPPYRELNELCDSLGYFFRVKCSNDGVKAQATIQLQLDDVLLTGDG 1410
Query: 1808 QNPQKKMAQKLAARNALAVLKEKETAEAKEKGDE----------NGKKRKNGTQTFT--- 1854
K+A AA + L L+++ + GD N R+ T T
Sbjct: 1411 SEQTNKLALGKAASHLLTQLEKRNISRKTSLGDNQSSMDVNLACNHSDRETLTSETTEIQ 1470
Query: 1855 -----------------RQTLNDICLRRNWPMPLYRCVRE----------GGPAHAKRFT 1887
R TL++ C + WPMP + E GG KR +
Sbjct: 1471 SIVIPFIGPINMKKGGPRGTLHEFCKKHLWPMPTFDTSEEKSRTPFEFIDGG---EKRTS 1527
Query: 1888 YAVRVNT-TDKGWTDECV---GEPMPSVKKAKDSAAVLLL 1923
++ +T T + E V GE P K + DSA V LL
Sbjct: 1528 FSSFTSTITLRIPNREAVMYAGEARPDKKSSFDSAVVELL 1567
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Ribonuclease (RNase) III involved in RNA-mediated post-transcriptional gene silencing (PTGS). Involved in the processing of repeat-associated small interfering RNAs (ra-siRNAs, derived from heterochromatin and DNA repeats such as transposons) by cleaving small dsRNAs into 24 nucleotide ra-siRNAs. Plays a role in antiviral RNA silencing. Involved in the production of viral siRNAs derived from the cabbage leaf curl virus (CaLCuV) and tobacco rattle virus (TRV). Targeted by the viral silencing suppressor (VSR) protein 2b of the cucumber mosaic virus (CMV) that inactivates DCL3 function in RNA silencing. Acts redundantly with DICER-LIKE 1 (DCL1) to promote flowering via repression of FLOWERING LOCUS C (FLC). Does not seem to be involved in microRNAs (miRNAs) processing. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|Q10HL3|DCL2A_ORYSJ Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp. japonica GN=DCL2A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 384 bits (986), Expect = e-105, Method: Compositional matrix adjust.
Identities = 259/734 (35%), Positives = 389/734 (52%), Gaps = 107/734 (14%)
Query: 304 ARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPL 363
AR YQL+ LE+A + NT+AFLETG+GKTLIAV+L+R+ + ++R + + AVFLVP V L
Sbjct: 34 ARWYQLEALERAVRGNTLAFLETGSGKTLIAVMLLRAYAHRVRRPDSRRFAVFLVPTVVL 93
Query: 364 VYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIK 423
V QQA V+ + T VV +CGEMG DFWDA W+ + + +VLVMT QILL+ LRHS +
Sbjct: 94 VGQQARVVEQHTDLVVKQFCGEMGVDFWDAATWRSQLEDGEVLVMTPQILLDNLRHSFFR 153
Query: 424 MEAINLLILDECHHAVKKHPYSLVMSEFYH----TTSKEKRPSVFGMTASPVNLKGVSSQ 479
++ I LLI DECHHA PY+ + EFYH +++ + P +FGM+AS + K ++
Sbjct: 154 LQDIALLIFDECHHARGNTPYACIFKEFYHPQLNSSASDPLPRIFGMSASLIYSKDLNPH 213
Query: 480 VDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEVA 539
+ + +I +E+ ++S V T+ L +++P S +V++D + LH +
Sbjct: 214 -NYSKQISEIENLMNSKVYTVDSESALSEYIPFASTKIVDFDDSNISSELHANI------ 266
Query: 540 VEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKL-RAINYALGE 598
S R + + A D R+++G S + A I KL Y L
Sbjct: 267 -----LSCLNRLNKKHIEALD-------RKLHGSS----LENAKQRISKLHHTFVYCLYN 310
Query: 599 LGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVV 658
LG W A K A+ +Q+ E + + F L K VEG + +V
Sbjct: 311 LGVWLAAKAAE-----VQSYEENS----LSFWGETLDKN--------VEGFIRNYSEEVH 353
Query: 659 DSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQH 718
+ F++ G H+ A DG +TPKV LI+ LL+Y+H
Sbjct: 354 RELSCFLKNG-------------------HIGEKFPADSQDGILTPKVHCLIRTLLQYRH 394
Query: 719 TEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNN---SQEMRTFQMQETIAK 775
+D R I+FVERV+ ++VL + + + +S + G SQ + E +
Sbjct: 395 MQDLRCIVFVERVITSIVLEHLLSSIHQMSGWNVKHMAGSRPGLLSQSRKNH--TEIVES 452
Query: 776 FRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIERG 835
FR G+V +++AT + EEGLD+ CN+VIRFD + TV ++IQSRGRAR SDY+L++ RG
Sbjct: 453 FRKGKVHIIIATQILEEGLDVPSCNLVIRFDPSATVCSFIQSRGRARMENSDYLLLVGRG 512
Query: 836 NLSHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAVP-------GTVYQVEST 888
++ T N+E+ L I R +++ RL S+ P T Y+VEST
Sbjct: 513 DVEAQT------NAEKFLASGQIMR------EESLRLGSISCQPLENTLCEDTYYRVEST 560
Query: 889 GAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFEK 948
A+V+LNS+V LIHF+CS+LPSD Y P F + +K G +C L LP ++P +
Sbjct: 561 RAIVTLNSSVPLIHFFCSKLPSDEYFNPLPRFDI---DKASG----TCTLHLPKSSPVQT 613
Query: 949 LEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLP--DKGSGEQQEKVDQNDEGEPLPG 1006
+ V + ++ VCL AC++LH +GA TD LLP D E+ + V +N +P
Sbjct: 614 VN--VEGEGSILKETVCLKACQELHAIGALTDSLLPELDVPCDEEPDIVVENKIEQP--- 668
Query: 1007 TARHREFYPEGVAD 1020
++PE D
Sbjct: 669 -----SYFPEEFVD 677
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Probably involved in the RNA silencing pathway. May cleave double-stranded RNA to produce short 21-24 nucleotides (nt) RNAs which target the selective destruction of complementary RNAs. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|Q7XD96|DCL3B_ORYSJ Endoribonuclease Dicer homolog 3b OS=Oryza sativa subsp. japonica GN=DCL3B PE=2 SV=2 | Back alignment and function description |
|---|
Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust.
Identities = 219/582 (37%), Positives = 334/582 (57%), Gaps = 26/582 (4%)
Query: 1223 LMMADSCANAGDLEGRIVTAAHSGKRFYVESIRYEMTAESSFPRK-EGYLGPLEYSSYAD 1281
+ +A+ + ++ +V + H+G+ + V + + TAE SF +G P ++S+ D
Sbjct: 884 IHLANKSLHCSSIKDSVVLSLHTGRIYTVLDLILDTTAEDSFDEMCKGKASP--FTSFVD 941
Query: 1282 YYKQKYGVELIFKKQPLIRGRGVSYCKNLLSPRFEHSEEQEGEGEEILDKTYYVFLPPEL 1341
YY QKYG+ + +QPL+ + NLL + ++ + G+ + + + +PPEL
Sbjct: 942 YYHQKYGIIIQHPEQPLLLLKQSHNAHNLLFSKLKYLDGSTGKPLLMEKEQIHARVPPEL 1001
Query: 1342 CFIHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKDKINY--PVPASKILEALTAASCQET 1399
+ +++ LPS++ R++S++LA QL+ +I Y +P + ILEA+T C ET
Sbjct: 1002 LIHLDVTTDILKSFYLLPSVIHRLQSLMLASQLRREIGYNQHIPVTLILEAITTLRCCET 1061
Query: 1400 FCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYI 1459
F ER ELLGD+ LK+VV LFL+YP KHEGQL+ MR + V N L+++ + + LQ Y+
Sbjct: 1062 FSLERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSDMRSKAVCNATLHKHGIWRSLQGYV 1121
Query: 1460 QADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGE 1519
+ + F P RW APG + + G + F ++ Y DD
Sbjct: 1122 RDNAFDPRRWVAPGQISLRPFPCNCGIETAF-------------VPSHRRYIRDDPSFFV 1168
Query: 1520 LEGDSSSYRVLSSKTLADVVEALIGVYYVEGGKDAANHLMKWIGIQVESDP---EEVGCP 1576
+ +R + SKT++D VEAL+G YYV GG AA +M+W GI ++ D +EV
Sbjct: 1169 GKPCDRGHRWMCSKTISDCVEALVGAYYVGGGIAAALWVMRWFGIDIKCDMKLLQEVKFN 1228
Query: 1577 SRPACVPESVLRSVDFHALEDALKIKFKDRGLLVEAITHASRPSSGVS-CYQRLEFVGDA 1635
+ C S+ + D LE LK F +GLL+EAITH S GV CYQRLEF+GD+
Sbjct: 1229 ASHLC---SLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDS 1285
Query: 1636 VLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIR 1695
VLD L+T+HL+ ++T++ PG LTDLR+A V+NENFA+ V++ +H HL+HGS L QI
Sbjct: 1286 VLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQIT 1345
Query: 1696 DFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLD 1755
++V+ LE K CK PKVLGDI+ESIAGA+F+D+ + +VW++F+PLL
Sbjct: 1346 EYVRSNLECQGKES-EFLQHTTCKVPKVLGDIMESIAGAVFIDTDFNVDMVWEIFEPLLS 1404
Query: 1756 PMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNLATVEV 1797
P++TP+ L + P REL E C L K + G +E+
Sbjct: 1405 PLITPDKLALPPYRELLELCSHIGCFLNSKCTSKGEEVIIEM 1446
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Probably involved in the RNA silencing pathway. May cleave double-stranded RNA to produce short 21-24 nucleotides (nt) RNAs which target the selective destruction of complementary RNAs. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|Q5N870|DCL3A_ORYSJ Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp. japonica GN=DCL3A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust.
Identities = 252/759 (33%), Positives = 388/759 (51%), Gaps = 84/759 (11%)
Query: 288 KVGKKSEAKEKMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQR 347
+ GK+ K + + R YQLDV E A ++NTIA L+TGAGKT+IAV+LI+ +
Sbjct: 16 EAGKQKLQKRECQDFTPRRYQLDVYEVAMRRNTIAMLDTGAGKTMIAVMLIKEFGKINRT 75
Query: 348 QNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLV 407
+N + +FL P V LV QQ EVI T + V Y G G D W RWQ + QV+V
Sbjct: 76 KNAGKVIIFLAPTVQLVTQQCEVIEIHTDFEVEQYYGAKGVDQWTGPRWQEQISKYQVMV 135
Query: 408 MTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMT 467
MT Q+ L LR++ + ++ ++L+I DECHHA HPY+ +M EFYH + E +PSVFGMT
Sbjct: 136 MTPQVFLQALRNAFLILDMVSLMIFDECHHATGNHPYTRIMKEFYHKS--EHKPSVFGMT 193
Query: 468 ASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYD-KAASL 526
ASPV KG+SS +DC + C LE+ LD+ + T+ DR+E+E VP E+ YD K
Sbjct: 194 ASPVIRKGISSHLDCEGQFCELENLLDAKIYTVSDREEIEFCVPSAKEMCRYYDSKPVCF 253
Query: 527 WSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLI 586
L E+L + SK+ + + ++ Y ++ + L
Sbjct: 254 EDLSEELGVL-------------CSKYDALITELQNKRSDM---YKDADDITKESKRRLS 297
Query: 587 QKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELV 646
+ + I Y L ++G CA + + + ER ++ +L E+V
Sbjct: 298 KSIAKICYCLDDVGLICASEATKICI------ERGQ-------EKGWLK--------EVV 336
Query: 647 EGAVSKKDAKVVDSENGFVEGGTNEI----EEGELLDSHVVSGGEHVDVIIGA------A 696
+ + DA + F E + E L+D + G +D+++ + A
Sbjct: 337 DATDQQTDA---NGSRLFAENSALHMKFFEEALHLIDKRLQQG---IDMLLNSESGCVEA 390
Query: 697 VADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLI 756
G ++PK+ LI+I + ++ R +IFV+R + A V+ ++ ++ L+ + L
Sbjct: 391 AKTGYISPKLYELIQIFHSFSNSRHARCLIFVDRKITARVIDRMIKKIGHLAHFTVSFLT 450
Query: 757 GHNNSQEMRTFQMQ-ETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYI 815
G +S + T +MQ +T+ FR G+V LL T VAEEG+ + +C+ VIRFDL +T +Y+
Sbjct: 451 GGRSSVDALTPKMQKDTLDSFRSGKVNLLFTTDVAEEGIHVPECSCVIRFDLPRTTRSYV 510
Query: 816 QSRGRARKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISV 875
QSRGRAR+ S YILMIERGN+ + AI R++ S +K S S
Sbjct: 511 QSRGRARQEDSQYILMIERGNVKQNDLI------------SAIVRSETSMVKIASSRESG 558
Query: 876 DAVPGTV-------YQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKP 928
+ PG V Y V +TGA V+ +S++ +++ YC +LP D+ +P F H+
Sbjct: 559 NLSPGFVPNEEINEYHVGTTGAKVTADSSISIVYRYCEKLPQDKCYSPKPTFEFTHHDD- 617
Query: 929 GGPTEYSCKLQLPCNAPFEKLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGS 988
Y C L LP +A + L GP +M A+Q VCL ACKKLHE+GA D L
Sbjct: 618 ----GYVCTLALPPSAVLQILVGPKARNMHKAKQLVCLDACKKLHELGALDDHLC--LSV 671
Query: 989 GEQQEKVDQNDEGEPLPGTARHREFYPEGVADILQGEWI 1027
+ ++ ++G + GT + +E + G W+
Sbjct: 672 EDPVPEIVSKNKGTGI-GTTKRKELHGTTRIHAWSGNWV 709
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Probably involved in the RNA silencing pathway. May cleave double-stranded RNA to produce short 21-24 nucleotides (nt) RNAs which target the selective destruction of complementary RNAs. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana GN=At3g03300 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust.
Identities = 269/719 (37%), Positives = 395/719 (54%), Gaps = 99/719 (13%)
Query: 300 PEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP 359
P AR YQ++ LE+A K+NTI FLETG+GKTLIA++L+RS L R+ VFLVP
Sbjct: 20 PLHFARSYQVEALEKAIKQNTIVFLETGSGKTLIAIMLLRSYAY-LFRKPSPCFCVFLVP 78
Query: 360 KVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH 419
+V LV QQAE ++ T VG Y G+MG DFWD+ W++E D +VLVMT ILL+ LRH
Sbjct: 79 QVVLVTQQAEALKMHTDLKVGMYWGDMGVDFWDSSTWKQEVDKYEVLVMTPAILLDALRH 138
Query: 420 SIIKMEAINLLILDECHHAVKKHPYSLVMSEFYH---TTSKEKRPSVFGMTASPVNLKGV 476
S + + I +LI+DECHHA KHPY+ +M EFYH + P +FGMTAS V KG
Sbjct: 139 SFLSLSMIKVLIVDECHHAGGKHPYACIMREFYHKELNSGTSNVPRIFGMTASLVKTKG- 197
Query: 477 SSQVDCAIK-ICNLESKLDSVVCTIKDRKELEKHVPM--PSEVVVEYDKAAS--LWSLHE 531
+D K I LE+ ++S V T ++ L VP PS ++ K S SL E
Sbjct: 198 -ENLDSYWKKIHELETLMNSKVYTCENESVLAGFVPFSTPSFKYYQHIKIPSPKRASLVE 256
Query: 532 QLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRA 591
+L+++ + R S +G D + V V +R L++
Sbjct: 257 KLERLTI--------KHRLS----LGTLDLNSS----TVDSVEKR--------LLRISST 292
Query: 592 INYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVS 651
+ Y L +LG A K AQS L+A QND S+L +++ LV+ S
Sbjct: 293 LTYCLDDLGILLAQKAAQS-LSASQND-------------SFLWGELNMFSVALVKKFCS 338
Query: 652 KKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIK 711
D+ F+ EI +G L+ V + I G A A G +T K LI+
Sbjct: 339 -------DASQEFLA----EIPQG--LNWSVAN-------INGNAEA-GLLTLKTVCLIE 377
Query: 712 ILLKYQHTEDFRAIIFVERVVAALVLPKVFAE-LPSLSFVKSASLIGHNNSQEMRTFQMQ 770
LL Y E+ R IIFV+RV+ A+VL + AE LP+ + K+ + G+N+ + +T + Q
Sbjct: 378 TLLGYSSLENIRCIIFVDRVITAIVLESLLAEILPNCNNWKTKYVAGNNSGLQNQTRKKQ 437
Query: 771 -ETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYI 829
E + FR G V ++VATS+ EEGLD++ CN+VIRFD A + ++IQSRGRAR SDY+
Sbjct: 438 NEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPASNICSFIQSRGRARMQNSDYL 497
Query: 830 LMIERGNLSHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAVPG----TVYQV 885
+M+E G+L + L + + +R+E+++ + L+ +P +++V
Sbjct: 498 MMVESGDLLTQSRLMKYLSGGKRMREESLDHS----------LVPCPPLPDDSDEPLFRV 547
Query: 886 ESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAP 945
ESTGA V+L+S+V LI+ YCS+LPSD Y P F + + + SC L LP + P
Sbjct: 548 ESTGATVTLSSSVSLIYHYCSRLPSDEYFKPAPRFDVNKDQG-------SCTLYLPKSCP 600
Query: 946 FEKLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGE----QQEKVDQNDE 1000
++++ ++ ++ +QAVCL AC +LH++GA +D L+PD E + EK+ N E
Sbjct: 601 VKEVKAE--ANNKVLKQAVCLKACIQLHKVGALSDHLVPDMVVAETVSQKLEKIQYNTE 657
|
Ribonuclease (RNase) III involved in RNA-mediated post-transcriptional gene silencing (PTGS). Involved in the processing of natural small interfering RNAs (nat-siRNAs, derived from cis-natural antisense transcripts) by cleaving small dsRNAs into 24 nucleotide nat-siRNAs. Plays an essential role in transitive silencing of transgenes by processing secondary siRNAs. This pathway, which requires DCL4 and RDR6, amplifies silencing by using the target RNA as substrate to generate secondary siRNAs, providing an efficient mechanism for long-distance silencing. May participate with DCL3 in the production of 24 nucleotide repeat-associated siRNAs (ra-siRNAs) which derive from heterochromatin and DNA repeats such as transposons. Plays a role in antiviral RNA silencing. Involved in the production of viral siRNAs derived from the turnip crinkle virus (TCV) and tobacco rattle virus (TRV). Targeted by the viral silencing suppressor (VSR) protein 2b of the cucumber mosaic virus (CMV) that inactivates DCL2 function in RNA silencing. Does not seem to be involved in microRNAs (miRNAs) processing. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|A7LFZ6|DCL4_ORYSJ Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 350 bits (898), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 252/766 (32%), Positives = 370/766 (48%), Gaps = 113/766 (14%)
Query: 293 SEAKEKMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKM 352
+ + K P AR YQLD+ ++A ++N I +L TG GKT IAVLLI + L R+ +
Sbjct: 19 TRGEPKDPRTIARKYQLDLCKRAVEENIIVYLGTGCGKTHIAVLLIYEL-GHLIRKPSRE 77
Query: 353 LAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQI 412
+ +FL P +PLV QQA VI T + V Y G G++ D Q W+ + +VLVMT QI
Sbjct: 78 VCIFLAPTIPLVRQQAVVIASSTDFKVQCYYGN-GKNSRDHQEWENDMREFEVLVMTPQI 136
Query: 413 LLNILRHSIIKMEAINLLILDECHHAV--KKHPYSLVMSEFYHTTSKEKRPSVFGMTASP 470
LL LRH IKM +I LLILDECHHA K+HPY+ +M EFY++ S EK P VFGMTASP
Sbjct: 137 LLQSLRHCFIKMNSIALLILDECHHAQPQKRHPYAQIMKEFYNSNSVEKFPRVFGMTASP 196
Query: 471 VNLKGV--------------------------SSQVDCAIKICNLESKLDSVVCTIKDRK 504
+ KGV S++++ I +LE L + VC++ D +
Sbjct: 197 IIGKGVMPSHSFTEKGGRSPCQPLIFFLPKGGSNKLNYTKCINSLEELLHAKVCSV-DNE 255
Query: 505 ELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEVA-VEEAAQSSSRRSKWQFMGARDAGA 563
ELE V P V Y H L + + ++ S R + +D+
Sbjct: 256 ELESVVASPDMEVYFYGPVN-----HSNLTTICIKELDSLKLQSERMLRASLCDFKDSQK 310
Query: 564 KEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANY 623
K L+ ++ + E N+I + L ELG + A + A++FL+ D+
Sbjct: 311 K--LKSLWRLHE--------NII-------FCLQELGSFGALQAARTFLS-FDGDKLDRR 352
Query: 624 QLDVK-----FQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELL 678
++D+ F YL+ S+L +G+ G+ ++E+ E
Sbjct: 353 EVDLNGSTSSFAHHYLNGATSILSRNKTDGS----------------HAGSFDLEKLE-- 394
Query: 679 DSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLP 738
+ + K LI +L +Y E+ + I+FV+R+ A +
Sbjct: 395 --------------------EPFFSNKFSVLINVLSRYGLQENMKCIVFVKRITVARAIS 434
Query: 739 KVFAELPSLSFVKSASLIG-HNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIR 797
+ L L F K L+G H+ S+ M +M + +F G V LLVATSV EEGLDI+
Sbjct: 435 NILQNLKCLEFWKCEFLVGCHSGSKNMSRNKMDAIVQRFSSGEVNLLVATSVGEEGLDIQ 494
Query: 798 QCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIERGNLSHATFLRNARNSEETLRKEA 857
C +V+RFDL +TV ++IQSRGRAR S Y++++ER N SH L E + +E
Sbjct: 495 TCCLVVRFDLPETVASFIQSRGRARMTKSKYVVLLERENQSHEKLLNGYIAGESIMNEEI 554
Query: 858 IERTDLSHLKDTSRLISVDAVPGTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILR 917
RT D + +YQV++TGA +S +V L+H YC LP D +
Sbjct: 555 DSRTSNDMF---------DCLEENIYQVDNTGASISTACSVSLLHCYCDNLPRDMFFTPS 605
Query: 918 PEFIMERHEKPGGPTEYSCKLQLPCNAPFEKLEGPVCSSMRLAQQAVCLAACKKLHEMGA 977
P F G C+L LP NA F + +G C S A++ CL AC KLH++GA
Sbjct: 606 PVFFY-----IDGIEGIICRLILPPNAAFRQADGQPCLSKDEAKRDACLKACVKLHKLGA 660
Query: 978 FTDMLLPDKGSGEQQEKVDQNDEGEPLPGTARHREFYPEGVADILQ 1023
TD LLP GS + + V N + + E + + +L+
Sbjct: 661 LTDFLLPGPGSRKNKVSVTNNSSNNKVEDDSLREELHEMLIPAVLK 706
|
Involved in the RNA silencing pathway. Cleaves double-stranded RNA to produce small interfering RNAs (siRNAs) which target the selective destruction of complementary RNAs. Required for the production of 21 nucleotide siRNAs. Regulates shoot apical meristem (SAM) initiation and maintenance, leaf polarization and lemma polarity through the trans-acting siRNAS (ta-siRNAs) pathway, which probably modulate the expression of the ARF2, ARF3, ARF4, ARF14 and ARF15 genes. Can process endogenous 21 nucleotide siRNAs derived from an imperfect inverted repeat. May not be involved in microRNAs (miRNAs) production. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|Q69LX2|DCL2B_ORYSJ Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica GN=DCL2B PE=2 SV=2 | Back alignment and function description |
|---|
Score = 337 bits (865), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 240/734 (32%), Positives = 366/734 (49%), Gaps = 136/734 (18%)
Query: 304 ARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPL 363
AR YQL+ LE+A + NT+AFLETG+GKTLIAV+L+R+ + ++R + + AVFLVP V L
Sbjct: 34 ARWYQLEALERAVRGNTLAFLETGSGKTLIAVMLLRAYAHRVRRPDSRRFAVFLVPTVVL 93
Query: 364 VYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIK 423
V QQA V+ + T VV +CGEMG DFWDA W+ + + +VLVMT QILL+ LRHS +
Sbjct: 94 VGQQARVVEQHTDLVVKQFCGEMGVDFWDAATWRSQLEDGEVLVMTPQILLDNLRHSFFR 153
Query: 424 MEAINLLILDECHHAVKKHPYSLVMSEFYH----TTSKEKRPSVFGMTASPVNLKGVSSQ 479
++ I LLI DECHHA PY+ + EFYH +++ + P +FGM+AS + K + +Q
Sbjct: 154 LQDIALLIFDECHHARGNTPYACIFKEFYHPQLNSSASDPLPRIFGMSASLIYSKDL-NQ 212
Query: 480 VDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEVA 539
+ + +I +E+ ++S V T+ L +++P S +V +D + LH +
Sbjct: 213 HNYSKQISEIENLMNSKVYTVDSESALSEYIPFASTKIVHFDDSNISSELHANI------ 266
Query: 540 VEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKL-RAINYALGE 598
S R + + A D R+++G S + A I KL R Y L
Sbjct: 267 -----LSCLNRLTKKHIEALD-------RKLHGSS----LENAKQRISKLHRTFVYCLYN 310
Query: 599 LGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVV 658
LG W A K A+ +Q+ E + + F L K VEG + +V
Sbjct: 311 LGVWLAAKAAE-----VQSYEENS----LSFWGETLDKN--------VEGFIRNYSEEVH 353
Query: 659 DSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQH 718
+ F++ G H+ A DG +TPKV LI+ LL+Y+H
Sbjct: 354 RELSCFLKNG-------------------HIGEKFPADSQDGILTPKVHCLIRTLLQYRH 394
Query: 719 TEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNN---SQEMRTFQMQETIAK 775
+D R I+FV+RV+ ++VL + + + +S + G SQ + E +
Sbjct: 395 MQDLRCIVFVQRVITSIVLEPLLSSIHQMSGWNVKHMAGSRPGLLSQSRKNH--TEIVES 452
Query: 776 FRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIERG 835
FR G+V +++AT + EEGLD+ CN+VIRFD + TV ++IQSRGRAR SDY+L++ RG
Sbjct: 453 FRKGKVHIIIATQILEEGLDVPSCNLVIRFDPSATVCSFIQSRGRARMENSDYLLLVGRG 512
Query: 836 NLSHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAVP-------GTVYQVEST 888
++ T + S + +R+E++ RL S+ P T Y+VEST
Sbjct: 513 DVEAHTNAKKFLASGQIMREESL------------RLGSISCQPLENTLCEDTYYRVEST 560
Query: 889 GAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFEK 948
A ++ A G +C L LP ++P +
Sbjct: 561 PA-FDIDKASG-----------------------------------TCTLHLPKSSPVQT 584
Query: 949 LEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLP--DKGSGEQQEKVDQNDEGEPLPG 1006
+ V + ++ VCL AC++LH +GA TD LLP D E+ + V +N +P
Sbjct: 585 VN--VEGEGSILKETVCLKACQELHAIGALTDSLLPELDVPCDEEPDIVVENKIEQP--- 639
Query: 1007 TARHREFYPEGVAD 1020
++PE D
Sbjct: 640 -----SYFPEEFVD 648
|
Probably involved in the RNA silencing pathway. May cleave double-stranded RNA to produce short 21-24 nucleotides (nt) RNAs which target the selective destruction of complementary RNAs. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|P84634|DCL4_ARATH Dicer-like protein 4 OS=Arabidopsis thaliana GN=DCL4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 322 bits (824), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 241/744 (32%), Positives = 362/744 (48%), Gaps = 83/744 (11%)
Query: 293 SEAKEKMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKM 352
S EK P + AR YQ+++ ++A ++N I +L TG GKT IAV+LI + L KK
Sbjct: 113 SPKMEKDPRKIARRYQVELCKKATEENVIVYLGTGCGKTHIAVMLIYEL-GHLVLSPKKS 171
Query: 353 LAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQ-RWQREFDTKQVLVMTAQ 411
+ +FL P V LV QQA+VI + + V +CG G+ + W+RE +VLVMT Q
Sbjct: 172 VCIFLAPTVALVEQQAKVIADSVNFKVAIHCG--GKRIVKSHSEWEREIAANEVLVMTPQ 229
Query: 412 ILLNILRHSIIKMEAINLLILDECHHAVKK--HPYSLVMSEFYHTTSKEKRPSVFGMTAS 469
ILL+ L+H IKME I+LLI DECHHA ++ HPY+ +M FY + S + RP +FGMTAS
Sbjct: 230 ILLHNLQHCFIKMECISLLIFDECHHAQQQSNHPYAEIMKVFYKSESLQ-RPRIFGMTAS 288
Query: 470 PVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSL 529
PV KG + + I +LE+ L++ V +++ +L+ V P V Y A S S
Sbjct: 289 PVVGKGSFQSENLSKSINSLENLLNAKVYSVESNVQLDGFVSSPLVKVYYYRSALSDAS- 347
Query: 530 HEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKL 589
Q + E + +R D + L + + +R+ NLI
Sbjct: 348 -----QSTIRYENMLEDIKQRCLASLKLLIDTHQTQTLLSMKRLLKRSHD----NLI--- 395
Query: 590 RAINYALGELGQWCAYKVAQSFLTALQN--DERANYQLDVKFQESYLSKVVSLLQCELVE 647
Y L LG W A + A+ L + N DE K ++YLS
Sbjct: 396 ----YTLLNLGLWGAIQAAKIQLNSDHNVQDEPVGKNPKSKICDTYLSMA---------- 441
Query: 648 GAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQ 707
E L S V D++ AA+ + + K+
Sbjct: 442 ---------------------------AEALSSGVAKDENASDLLSLAALKEPLFSRKLV 474
Query: 708 SLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTF 767
LIKIL ++ + IIFV R+V A L + L L KS L+G ++ + +
Sbjct: 475 QLIKILSVFRLEPHMKCIIFVNRIVTARTLSCILNNLELLRSWKSDFLVGLSSGLKSMSR 534
Query: 768 QMQETIAK-FRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGS 826
+ ETI K F+ + LLVAT V EEGLDI+ C +VIR+DL +TV ++IQSRGRAR P S
Sbjct: 535 RSMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFIQSRGRARMPQS 594
Query: 827 DYILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAVPGT---VY 883
+Y +++ GN + N + +E+ + E R+ S + P +Y
Sbjct: 595 EYAFLVDSGNEKEMDLIENFKVNEDRMNLEITYRS------------SEETCPRLDEELY 642
Query: 884 QVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCN 943
+V TGA +S S++ L++ YCS+LP D + +PEF + ++ GG C++ LP N
Sbjct: 643 KVHETGACISGGSSISLLYKYCSRLPHDEFFQPKPEFQFKPVDEFGGTI---CRITLPAN 699
Query: 944 APFEKLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEQQEKVDQNDEGEP 1003
AP ++E + S A++ CL A +LH +G D LLPD + E D + +
Sbjct: 700 APISEIESSLLPSTEAAKKDACLKAVHELHNLGVLNDFLLPDSKDEIEDELSDDEFDFDN 759
Query: 1004 LPGTARHR-EFYPEGVADILQGEW 1026
+ G R + Y V + + +W
Sbjct: 760 IKGEGCSRGDLYEMRVPVLFKQKW 783
|
Ribonuclease (RNase) III involved in RNA-mediated post-transcriptional gene silencing (PTGS). Functions in the biogenesis of trans-acting small interfering RNAs (ta-siRNAs, derived from the TAS1, TAS2 or TAS3 endogenous transcripts) by cleaving small dsRNAs into 21-24 nucleotide ta-siRNAs. Functions with the dsRNA-binding protein DRB4 in ta-siRNAs processing. Acts in the RDR6/SGS3/DCL4/AGO7 ta-siRNA pathway involved in leaf developmental timing. Plays a role in transitive silencing of transgenes by processing secondary siRNAs. This pathway, which requires DCL2 and RDR6, amplifies silencing by using the target RNA as substrate to generate secondary siRNAs, providing an efficient mechanism for long-distance silencing. Required for the production of the 30-40 nucleotide bacterial-induced long siRNAs (lsiRNA). May participate with DCL3 in the production of 24 nucleotide repeat-associated siRNAs (ra-siRNAs) which derive from heterochromatin and DNA repeats such as transposons. Plays an important role in antiviral RNA silencing. Involved in the production of viral siRNAs derived from the cucumber mosaic virus (CMV), turnip crinkle virus (TCV) and tobacco rattle virus (TRV). Targeted by the viral silencing suppressor (VSR) protein 2b of the cucumber mosaic virus (CMV) that inactivates DCL4 function in RNA silencing. Does not seem to be involved in microRNAs (miRNAs) processing. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1931 | ||||||
| 225453660 | 1971 | PREDICTED: endoribonuclease Dicer homolo | 0.991 | 0.971 | 0.797 | 0.0 | |
| 449432976 | 1986 | PREDICTED: endoribonuclease Dicer homolo | 0.994 | 0.967 | 0.784 | 0.0 | |
| 449478272 | 1987 | PREDICTED: LOW QUALITY PROTEIN: endoribo | 0.996 | 0.968 | 0.783 | 0.0 | |
| 356571277 | 1942 | PREDICTED: endoribonuclease Dicer homolo | 0.975 | 0.970 | 0.798 | 0.0 | |
| 356504203 | 1944 | PREDICTED: endoribonuclease Dicer homolo | 0.975 | 0.968 | 0.797 | 0.0 | |
| 374259482 | 1886 | Dicer [Arabidopsis thaliana] | 0.958 | 0.980 | 0.743 | 0.0 | |
| 15223286 | 1909 | endoribonuclease Dicer [Arabidopsis thal | 0.958 | 0.969 | 0.734 | 0.0 | |
| 334182203 | 1910 | endoribonuclease Dicer [Arabidopsis thal | 0.958 | 0.968 | 0.734 | 0.0 | |
| 6102610 | 1909 | CAF protein [Arabidopsis thaliana] | 0.958 | 0.969 | 0.733 | 0.0 | |
| 87240866 | 1939 | Helicase, C-terminal; Argonaute and Dice | 0.865 | 0.862 | 0.791 | 0.0 |
| >gi|225453660|ref|XP_002268369.1| PREDICTED: endoribonuclease Dicer homolog 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3202 bits (8303), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1585/1988 (79%), Positives = 1736/1988 (87%), Gaps = 74/1988 (3%)
Query: 1 MEGETRVSDIVGGGESNQSSYWLDACEDILID-EFVNFDTSVVQDSVDNTSNQDSLSNDF 59
MEGE ++ G S +YWLDACEDI D +F F++++V +S D SN D + DF
Sbjct: 1 MEGE-----MMNKGVSGSEAYWLDACEDIPCDLDFPEFESNIVSESADAPSNPDGV-GDF 54
Query: 60 FGGIDHILDSIKNGSGL-----------PNSNGNLLKNGSED-STGGEN---HQAEGLIL 104
FGGID ILDSIKNG+GL P+ + +E+ + G N H + G+
Sbjct: 55 FGGIDRILDSIKNGTGLTPVVDEGTTGIPDCAVSQTWFQTENVAVGASNLQLHHSFGVSD 114
Query: 105 LSNNGSDKDGVDRKRKLENC---ENVNGYL-VNGKAGGRLSDHFTKENGVHRDNGNNDHE 160
+S N D +G R+ + C E NG + ++GKA +L H K NGV + + N ++
Sbjct: 115 VSPN--DTNGTKRRSDDDGCQFHEADNGKMSLDGKAESKLV-HSPKGNGVKK-HENRPND 170
Query: 161 ASRIRDFDSEDRFSKRARVSVCKNESQYSSRGQYCSSDKDRVFGRKRLRDLDDIGRRDRD 220
ASR RDFD ++R+SKRAR+ KN+ YS+RGQY ++R RKR R+ ++ RRD D
Sbjct: 171 ASRDRDFDDQERYSKRARLGDSKNDRHYSTRGQY--QPRERSSCRKRSRNWEEFDRRDGD 228
Query: 221 PMRRREHYNGSSRKDVRDKDFRDREPRGYWERDRLGSNGMVFRLGSWEADHNRAGKEANG 280
+RR+EHY SR++ RD+++RDRE +GYWERDRLGS M+F LGSWEA+ NR GK
Sbjct: 229 QIRRKEHYG--SRRESRDREWRDREAKGYWERDRLGSKEMIFHLGSWEAERNREGKMGAE 286
Query: 281 INQECNGKVGKK--SEAKEKMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLI 338
NQECNG V ++ E KEK+PEEQAR YQLDVLEQAKK+NTIAFLETGAGKTLIAVLLI
Sbjct: 287 KNQECNGSVTERRLEEPKEKLPEEQARQYQLDVLEQAKKRNTIAFLETGAGKTLIAVLLI 346
Query: 339 RSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQR 398
RS+ NDLQ QNKK+LAVFLVPKVPLVYQQAEVIRE+TGY VGHYCGEMGQDFWDA+RWQR
Sbjct: 347 RSVFNDLQGQNKKLLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQR 406
Query: 399 EFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKE 458
EF+TK VLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTT KE
Sbjct: 407 EFETKHVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKE 466
Query: 459 KRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVV 518
KRPSVFGMTASPVNLKGVSSQVDCAIKI NLESKLDS+VCTIKDRKELEKHVPMPSE+VV
Sbjct: 467 KRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPSEIVV 526
Query: 519 EYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTE 578
EYDKAA+LWSLHEQ+KQME+AVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTE
Sbjct: 527 EYDKAATLWSLHEQIKQMELAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTE 586
Query: 579 SDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVV 638
SDGAANLIQKLRAINYALGELGQWCA+KVAQSFLTALQNDERANYQLDVKFQESYL+KVV
Sbjct: 587 SDGAANLIQKLRAINYALGELGQWCAFKVAQSFLTALQNDERANYQLDVKFQESYLNKVV 646
Query: 639 SLLQCELVEGAVSKKDAKVVDSENGFVEGGT--NEIEEGELLDSHVVSGGEHVDVIIGAA 696
SLLQC+L EGAVS KD KVVD+E G+ EIEEGEL +SHVVSGGEHVDVIIGAA
Sbjct: 647 SLLQCQLSEGAVSDKDKKVVDTETSVSVDGSAIEEIEEGELPNSHVVSGGEHVDVIIGAA 706
Query: 697 VADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLI 756
VADGKVTPKVQSL+KILLKYQ TEDFRAIIFVERVVAALVLPKVFAELPSLSF+K ASLI
Sbjct: 707 VADGKVTPKVQSLVKILLKYQQTEDFRAIIFVERVVAALVLPKVFAELPSLSFIKCASLI 766
Query: 757 GHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQ 816
GHNNSQEMRT QMQ+TIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQ
Sbjct: 767 GHNNSQEMRTCQMQDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQ 826
Query: 817 SRGRARKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVD 876
SRGRARKPGSDYILM+ERGNLSH FLRNARNSEETLRKEAIERTDLSHLK TSRLISVD
Sbjct: 827 SRGRARKPGSDYILMVERGNLSHGAFLRNARNSEETLRKEAIERTDLSHLKGTSRLISVD 886
Query: 877 AVPGTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSC 936
PGTVYQVESTGA+VSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSC
Sbjct: 887 TTPGTVYQVESTGAIVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSC 946
Query: 937 KLQLPCNAPFEKLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEQQEKVD 996
KLQLPCNAPFEKLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGE+ EKVD
Sbjct: 947 KLQLPCNAPFEKLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEEGEKVD 1006
Query: 997 QNDEGEPLPGTARHREFYPEGVADILQGEWILSGRDGCTGSKLFHLFMYTVKCVNNGISK 1056
QNDEG+PLPGTARHREFYPEGVA++LQGEWIL G+DGC S+L HL+MY VKCVN G SK
Sbjct: 1007 QNDEGDPLPGTARHREFYPEGVANVLQGEWILLGKDGCNSSRLVHLYMYAVKCVNFGSSK 1066
Query: 1057 DPFLTQVSDFAVLFSSELDAE--------------------------------LASLKNF 1084
DPFLTQVSDF VLF +ELDAE LASLK+F
Sbjct: 1067 DPFLTQVSDFVVLFGNELDAEVLSISMDLFIARTMVTKASLVFWGPIDITESQLASLKSF 1126
Query: 1085 HVRLMSIVLDVDVEPYTTPWDPAKAYLFVPVVSDKSVDPMNELDWDLVEKITKTDAWTNP 1144
HVRLMSIVLDVDVEP TTPWDPAKAYLFVPVV DKS DP+ ++DWD+VE+I +TD W+NP
Sbjct: 1127 HVRLMSIVLDVDVEPSTTPWDPAKAYLFVPVVGDKSEDPIRQIDWDIVERIIRTDGWSNP 1186
Query: 1145 LQRARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAIAQFDVVKASGL 1204
LQRARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGA+AQ+DVV+ASGL
Sbjct: 1187 LQRARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAVAQYDVVRASGL 1246
Query: 1205 VPDREAMQIHNA-DMPTGKLMMADSCANAGDLEGRIVTAAHSGKRFYVESIRYEMTAESS 1263
VP+RE +++ D+ GKLMMA + +A DL GRIVTAAHSGKRFYV+S+RY+MTAE+S
Sbjct: 1247 VPNRETIEMMKGEDLTKGKLMMAGTQTSAEDLVGRIVTAAHSGKRFYVDSVRYDMTAENS 1306
Query: 1264 FPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYCKNLLSPRFEHSEEQEG 1323
FPRKEGYLGPLEYSSYADYY+QKYGVELI+K+QPLIRGRGVSYCKNLLSPRFEHSE G
Sbjct: 1307 FPRKEGYLGPLEYSSYADYYRQKYGVELIYKQQPLIRGRGVSYCKNLLSPRFEHSE---G 1363
Query: 1324 EGEEILDKTYYVFLPPELCFIHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKDKINYPVP 1383
E +E LDKTYYVFLPPELCF+HPLPGSLVR AQRLPSIMRRVESMLLA+QLKD INYPVP
Sbjct: 1364 ESDETLDKTYYVFLPPELCFVHPLPGSLVRSAQRLPSIMRRVESMLLAVQLKDVINYPVP 1423
Query: 1384 ASKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSN 1443
A+KILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSN
Sbjct: 1424 AAKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSN 1483
Query: 1444 LVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGT 1503
+VLYQ AL KGLQSYIQADRFAPSRWAAPGVLPVFDEDTK+ +SSLFD E+ +E G
Sbjct: 1484 MVLYQSALCKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKETESSLFDHERPFSETAPGN 1543
Query: 1504 DKNYNEYEDDDMEDGELEGDSSSYRVLSSKTLADVVEALIGVYYVEGGKDAANHLMKWIG 1563
D++ + Y+DD+MEDGELE DSSSYRVLSSKTLADVVEALIGVYYVEGGK+AANHLMKWIG
Sbjct: 1544 DRHGDGYDDDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIG 1603
Query: 1564 IQVESDPEEVGCPSRPACVPESVLRSVDFHALEDALKIKFKDRGLLVEAITHASRPSSGV 1623
IQVE DPE++ C + P VPES+LRSV+F LE AL IKF +RGLL+EAITHASRPSSGV
Sbjct: 1604 IQVEFDPEDIVCATGPCNVPESILRSVNFDTLEGALNIKFNNRGLLIEAITHASRPSSGV 1663
Query: 1624 SCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHL 1683
SCYQRLEFVGDAVLDHLIT+HLFF+YT+LPPGRLTDLRAAAVNNENFARVAVKHKLH+HL
Sbjct: 1664 SCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHIHL 1723
Query: 1684 RHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDT 1743
RHGSSAL++QIRDFVKEV +EL KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDT
Sbjct: 1724 RHGSSALEKQIRDFVKEVQDELSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDT 1783
Query: 1744 SVVWQVFQPLLDPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNLATVEVYIDGVQ 1803
+VVW+VFQPLL PMVTPETLPMHPVRELQERCQQQAEGLEYKA+RSGNLATVEV+IDGVQ
Sbjct: 1784 AVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKATRSGNLATVEVFIDGVQ 1843
Query: 1804 VGVAQNPQKKMAQKLAARNALAVLKEKETAEAKEKGDENGKKRKNGTQTFTRQTLNDICL 1863
+G+AQNPQKKMAQKLAARNAL VLKE+ETAEAKE DENGKK+KNG+QTFTRQTLNDICL
Sbjct: 1844 IGIAQNPQKKMAQKLAARNALVVLKERETAEAKEGDDENGKKKKNGSQTFTRQTLNDICL 1903
Query: 1864 RRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLL 1923
RRNWPMP+YRCV EGGPAHAKRFT+AVRVNT DKGWTDEC+GEPMPSVKKAKDSAAVLLL
Sbjct: 1904 RRNWPMPVYRCVNEGGPAHAKRFTFAVRVNTNDKGWTDECIGEPMPSVKKAKDSAAVLLL 1963
Query: 1924 ELLNKWYS 1931
ELLNKWY+
Sbjct: 1964 ELLNKWYT 1971
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432976|ref|XP_004134274.1| PREDICTED: endoribonuclease Dicer homolog 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 3109 bits (8060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1566/1996 (78%), Positives = 1710/1996 (85%), Gaps = 75/1996 (3%)
Query: 1 MEGETRVSDIVGGGESNQ-------SSYWLDACEDIL--IDEFVNFDTSVVQ-DSVDNTS 50
ME ETRV G S++ SS+WLDACEDI I++FV+F S+ SVD+TS
Sbjct: 1 MEDETRVP----GSFSSEPACSLGVSSFWLDACEDIPCDINDFVDFQASITPGSSVDHTS 56
Query: 51 NQDSLSNDFFGGIDHILDSIKNGSGLP--NSNGN---LLKNG---SEDSTGGENHQAEGL 102
+Q +LSNDFFGGIDH LDSIKNG L NG+ ++ G D++G + +
Sbjct: 57 DQQNLSNDFFGGIDHFLDSIKNGGSLSPVTCNGDRDCTVREGFFIENDASGVRDMPVDSS 116
Query: 103 ILLSN---------NGSDKDGVDRKRKL-ENCENVNGYLV-NGKAGGRLSDHFTKENGVH 151
+ SN NG KD +D + E E+VNG+ NG G R+ + K NGV
Sbjct: 117 TVQSNGAQIEILQCNGLSKDNLDNGSHICERYESVNGFQSPNGCEGLRVVET-PKRNGVK 175
Query: 152 RDNGNNDHEASRIRDFDSEDRFSKRARVSVCKNESQYSSRGQYCSSDKDRVFGRKRLRDL 211
+ ND + R D+E+R +KR R+S NE YS+RGQ S D+++ RKRLRD
Sbjct: 176 KHERTND-TSLRGWGCDNEERSNKRPRISNGNNERYYSNRGQCLSRDREKFHTRKRLRDR 234
Query: 212 DDIGRRDRDPMRRREHYNGSSRKDVRDKDFRDREPRGYWERDRLGSNGMVFRLGSWEADH 271
D+I RR+R RRREHY G+ KD RD+D R+RE +GYWERD+ GSN MVF G WEAD
Sbjct: 235 DEIDRRERSYFRRREHY-GTGGKDARDRDLREREQKGYWERDKSGSNDMVFHSGMWEADR 293
Query: 272 NRAGKEANGINQECNGKVGKKS-EAKEKMPEEQARPYQLDVLEQAKKKNTIAFLETGAGK 330
NR N N E G K S E KEK+PEEQAR YQLDVLEQAKKKNTIAFLETGAGK
Sbjct: 294 NRDAMTDNDKNLEFQGTADKSSKEIKEKIPEEQARQYQLDVLEQAKKKNTIAFLETGAGK 353
Query: 331 TLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDF 390
TLIAVLLI+SI NDLQ QNKKMLAVFLVPKVPLVYQQAEVIRE+TGY VGHYCGEMGQDF
Sbjct: 354 TLIAVLLIKSIYNDLQTQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDF 413
Query: 391 WDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSE 450
WDA+RWQREF+TKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSE
Sbjct: 414 WDARRWQREFETKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSE 473
Query: 451 FYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHV 510
FYHTT KE+RPSVFGMTASPVNLKGVS+Q+DCAIKI NLESKLDS VCTIKDRKELEKHV
Sbjct: 474 FYHTTPKERRPSVFGMTASPVNLKGVSNQIDCAIKIRNLESKLDSTVCTIKDRKELEKHV 533
Query: 511 PMPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQV 570
PMPSEVVVEYDKAA+LWSLHE +KQ+EV VEEAA+ SSRRSKWQ MGARDAGA+EELRQV
Sbjct: 534 PMPSEVVVEYDKAATLWSLHELIKQIEVEVEEAAKLSSRRSKWQLMGARDAGAREELRQV 593
Query: 571 YGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQ 630
YGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQ
Sbjct: 594 YGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQ 653
Query: 631 ESYLSKVVSLLQCELVEGAVSKKD--AKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEH 688
ESYL+KVV+LLQC+L EGAVS KD A V + + +EIEEGELLDSHVVSGGEH
Sbjct: 654 ESYLNKVVALLQCQLSEGAVSDKDGIASVSEEDVANTRSNLDEIEEGELLDSHVVSGGEH 713
Query: 689 VDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLS 748
VD IIGAAVADGKVTPKVQSL+KILLKYQ+TEDFRAIIFVERVV+ALVLPKVFAELPSLS
Sbjct: 714 VDEIIGAAVADGKVTPKVQSLVKILLKYQYTEDFRAIIFVERVVSALVLPKVFAELPSLS 773
Query: 749 FVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLA 808
F+KSASLIGHNNSQ+MRT QMQ+TI+KFRDGRVTLLVATSVAEEGLDIRQCNVV+RFDLA
Sbjct: 774 FIKSASLIGHNNSQDMRTCQMQDTISKFRDGRVTLLVATSVAEEGLDIRQCNVVMRFDLA 833
Query: 809 KTVLAYIQSRGRARKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSHLKD 868
KTVLAYIQSRGRARKPGSDYILM+ERGNLSHA FLRNARNSEETLRKEA+ERTDLSHL+D
Sbjct: 834 KTVLAYIQSRGRARKPGSDYILMVERGNLSHAAFLRNARNSEETLRKEAVERTDLSHLED 893
Query: 869 TSRLISVDAVPGTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKP 928
TSRLIS+D P TVYQVESTGAVVSLNSAVGL+HFYCSQLPSDRYSILRPEF+M RHEKP
Sbjct: 894 TSRLISMDTTPDTVYQVESTGAVVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKP 953
Query: 929 GGPTEYSCKLQLPCNAPFEKLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGS 988
GGPTEYSCKLQLPCNAPFE LEGP+CSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGS
Sbjct: 954 GGPTEYSCKLQLPCNAPFEDLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGS 1013
Query: 989 GEQQEKVDQNDEGEPLPGTARHREFYPEGVADILQGEWILSGRDGCTGSKLFHLFMYTVK 1048
GE++EKV+QND+G+PLPGTARHREFYPEGVA+ILQGEWIL+GRD + SK HL+MYTV+
Sbjct: 1014 GEEKEKVEQNDDGDPLPGTARHREFYPEGVANILQGEWILTGRDTFSDSKFLHLYMYTVQ 1073
Query: 1049 CVNNGISKDPFLTQVSDFAVLFSSELDAE------------------------------- 1077
CVN G SKD FLTQVS+FAVLF SELDAE
Sbjct: 1074 CVNVGSSKDLFLTQVSNFAVLFGSELDAEVLSMSMDLFIARTITTKASLVFRGLCDITES 1133
Query: 1078 -LASLKNFHVRLMSIVLDVDVEPYTTPWDPAKAYLFVPVVSDKSVDPMNELDWDLVEKIT 1136
LASLK+FHVRLMSIVLDVDVEP TTPWDPAKAYLFVPVV DKS DP+ E+DW +V +I
Sbjct: 1134 QLASLKSFHVRLMSIVLDVDVEPTTTPWDPAKAYLFVPVVGDKSEDPVKEIDWVMVRRII 1193
Query: 1137 KTDAWTNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAIAQF 1196
+TDAW NPLQRARPDVYLGTNER LGGDRREYGFGKLRHGMAFGQKSHPTYGIRGA+AQF
Sbjct: 1194 QTDAWNNPLQRARPDVYLGTNERALGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAVAQF 1253
Query: 1197 DVVKASGLVPDREAMQIH-NADMPTGKLMMADSCANAGDLEGRIVTAAHSGKRFYVESIR 1255
DVVKASGLVPDR +++ + D P GKL+MAD+ DL GRIVTAAHSGKRFYV+SIR
Sbjct: 1254 DVVKASGLVPDRGDVELQRHPDQPKGKLLMADTSMAVEDLVGRIVTAAHSGKRFYVDSIR 1313
Query: 1256 YEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYCKNLLSPRF 1315
Y+ TAE+SFPRKEGYLGPLEYSSYADYYKQKYGVEL++K QPLIRGRGVSYCKNLLSPRF
Sbjct: 1314 YDTTAENSFPRKEGYLGPLEYSSYADYYKQKYGVELVYKHQPLIRGRGVSYCKNLLSPRF 1373
Query: 1316 EHSEEQEGEGEEILDKTYYVFLPPELCFIHPLPGSLVRGAQRLPSIMRRVESMLLAIQLK 1375
EH+ E E EE LDKTYYV+LPPELC +HPLPGSLVRGAQRLPSIMRRVESMLLAIQLK
Sbjct: 1374 EHA---ENESEETLDKTYYVYLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAIQLK 1430
Query: 1376 DKINYPVPASKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTR 1435
INYPVPASKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYP+KHEGQLTR
Sbjct: 1431 HMINYPVPASKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPRKHEGQLTR 1490
Query: 1436 MRQQMVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKS 1495
MRQQMVSN+VLYQYALSK LQSYIQADRFAPSRWAAPGVLPV+DED KDG+SS FDQ+KS
Sbjct: 1491 MRQQMVSNMVLYQYALSKKLQSYIQADRFAPSRWAAPGVLPVYDEDMKDGESSFFDQDKS 1550
Query: 1496 VAEDKLGTDKNYNEYEDDDMEDGELEGDSSSYRVLSSKTLADVVEALIGVYYVEGGKDAA 1555
++ D + + +ED ++ED E+E DSSSYRVLSSKTLADVVEALIGVYYVEGGK AA
Sbjct: 1551 NSDGVSEMDLHLDVFEDGEVEDREVESDSSSYRVLSSKTLADVVEALIGVYYVEGGKTAA 1610
Query: 1556 NHLMKWIGIQVESDPEEVGCPSRPACVPESVLRSVDFHALEDALKIKFKDRGLLVEAITH 1615
NHLMKWIGI+VE D EV C +R + +PES+LRSVDF ALE AL IKF+DRGLLVEAITH
Sbjct: 1611 NHLMKWIGIKVEFDAGEVECGTRQSNLPESILRSVDFDALEGALNIKFQDRGLLVEAITH 1670
Query: 1616 ASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAV 1675
ASRPS GVSCYQRLEFVGDAVLDHLIT+HLFF+YT+LPPGRLTDLRAAAVNNENFARVAV
Sbjct: 1671 ASRPSCGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAV 1730
Query: 1676 KHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAI 1735
KH LH+HLRHGSSAL++QIRDFVKEV +ELLKPGFNSFGLGDCKAPKVLGDIVESIAGAI
Sbjct: 1731 KHNLHIHLRHGSSALEKQIRDFVKEVQDELLKPGFNSFGLGDCKAPKVLGDIVESIAGAI 1790
Query: 1736 FLDSGRDTSVVWQVFQPLLDPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNLATV 1795
FLDSGRDT+VVW+VFQPLL PMVTPETLPMHPVRELQERCQQQAEGLEYKA+R GNLATV
Sbjct: 1791 FLDSGRDTAVVWRVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKATRIGNLATV 1850
Query: 1796 EVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEKETAEAKEKGDENGKKRKNGTQTFTR 1855
EV+IDGVQ+G+AQNPQKKMAQKLAARNALAVLKEKE +AKEK ++NGKK+KNG QTFTR
Sbjct: 1851 EVFIDGVQIGIAQNPQKKMAQKLAARNALAVLKEKEMDDAKEKIEDNGKKKKNGNQTFTR 1910
Query: 1856 QTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAK 1915
QTLNDICLRRNWPMP YRCV EGGPAHAKRFT+AVRVNTTDKGWTDECVGEPMPSVKKAK
Sbjct: 1911 QTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNTTDKGWTDECVGEPMPSVKKAK 1970
Query: 1916 DSAAVLLLELLNKWYS 1931
DSAAVLLLELLNK YS
Sbjct: 1971 DSAAVLLLELLNKLYS 1986
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449478272|ref|XP_004155270.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 3105 bits (8050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1561/1993 (78%), Positives = 1705/1993 (85%), Gaps = 68/1993 (3%)
Query: 1 MEGETRVSDIVGGGESNQ---SSYWLDACEDIL--IDEFVNFDTSVVQ-DSVDNTSNQDS 54
ME ETRV + SS+WLDACEDI I++FV+F S+ SVD+TS+Q +
Sbjct: 1 MEDETRVPGSFSSEPACSLGVSSFWLDACEDIPCDINDFVDFQASITPGSSVDHTSDQQN 60
Query: 55 LSNDFFGGIDHILDSIKNGSGLP--NSNGN---LLKNG---SEDSTGGENHQAEGLILLS 106
LSNDFFGGIDH LDSIKNG L NG+ ++ G D++G + + + S
Sbjct: 61 LSNDFFGGIDHFLDSIKNGGSLSPVTCNGDRDCTVREGFFIENDASGVRDMPVDSSTVQS 120
Query: 107 N---------NGSDKDGVDRKRKL-ENCENVNGYLV-NGKAGGRLSDHFTKENGVHRDNG 155
N NG KD +D + E E+VNG+ NG G R+ + K NGV +
Sbjct: 121 NGAQIEILQCNGLSKDNLDNGSHICERYESVNGFQSPNGCEGLRVVET-PKRNGVKKHER 179
Query: 156 NNDHEASRIRDFDSEDRFSKRARVSVCKNESQYSSRGQYCSSDKDRVFGRKRLRDLDDIG 215
ND + R D+E+R +KR R+S NE YS+RGQ S D+++ RKRLRD D+I
Sbjct: 180 TND-TSLRGWGCDNEERSNKRPRISNGNNERYYSNRGQCLSRDREKFHTRKRLRDRDEID 238
Query: 216 RRDRDPMRRREHYNGSSRKDVRDKDFRDREPRGYWERDRLGSNGMVFRLGSWEADHNRAG 275
RR+R RRREHY G+ KD RD+D R+RE +GYWERD+ GSN MVF G WEAD NR
Sbjct: 239 RRERSYFRRREHY-GTGGKDARDRDLREREQKGYWERDKSGSNDMVFHSGMWEADRNRDA 297
Query: 276 KEANGINQECNGKVGKKS--EAKEKMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLI 333
N N E G K K+K+PEEQAR YQLDVLEQAKKKNTIAFLETGAGKTLI
Sbjct: 298 MTDNDKNLEFQGTADKSXPRRLKKKLPEEQARQYQLDVLEQAKKKNTIAFLETGAGKTLI 357
Query: 334 AVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDA 393
AVLLI+SI NDLQ QNKKMLAVFLVPKVPLVYQQAEVIRE+TGY VGHYCGEMGQDFWDA
Sbjct: 358 AVLLIKSIYNDLQTQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDA 417
Query: 394 QRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYH 453
+RWQREF+TKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYH
Sbjct: 418 RRWQREFETKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYH 477
Query: 454 TTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMP 513
TT KE+RPSVFGMTASPVNLKGVS+Q+DCAIKI NLESKLDS VCTIKDRKELEKHVPMP
Sbjct: 478 TTPKERRPSVFGMTASPVNLKGVSNQIDCAIKIRNLESKLDSTVCTIKDRKELEKHVPMP 537
Query: 514 SEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGV 573
SEVVVEYDKAA+LWSLHE +KQ+EV VEEAA+ SSRRSKWQ MGARDAGA+EELRQVYGV
Sbjct: 538 SEVVVEYDKAATLWSLHELIKQIEVEVEEAAKLSSRRSKWQLMGARDAGAREELRQVYGV 597
Query: 574 SERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESY 633
SERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESY
Sbjct: 598 SERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESY 657
Query: 634 LSKVVSLLQCELVEGAVSKKD--AKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDV 691
L+KVV+LLQC+L EGAVS KD A V + + +EIEEGELLDSHVVSGGEHVD
Sbjct: 658 LNKVVALLQCQLSEGAVSDKDGIASVSEEDVANTRSNLDEIEEGELLDSHVVSGGEHVDE 717
Query: 692 IIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVK 751
IIGAAVADGKVTPKVQSL+KILLKYQ+TEDFRAIIFVERVV+ALVLPKVFAELPSLSF+K
Sbjct: 718 IIGAAVADGKVTPKVQSLVKILLKYQYTEDFRAIIFVERVVSALVLPKVFAELPSLSFIK 777
Query: 752 SASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTV 811
SASLIGHNNSQ+MRT QMQ+TI+KFRDGRVTLLVATSVAEEGLDIRQCNVV+RFDLAKTV
Sbjct: 778 SASLIGHNNSQDMRTCQMQDTISKFRDGRVTLLVATSVAEEGLDIRQCNVVMRFDLAKTV 837
Query: 812 LAYIQSRGRARKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSHLKDTSR 871
LAYIQSRGRARKPGSDYILM+ERGNLSHA FLRNARNSEETLRKEA+ERTDLSHL+DTSR
Sbjct: 838 LAYIQSRGRARKPGSDYILMVERGNLSHAAFLRNARNSEETLRKEAVERTDLSHLEDTSR 897
Query: 872 LISVDAVPGTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGP 931
LIS+D P TVYQVESTGAVVSLNSAVGL+HFYCSQLPSDRYSILRPEF+M RHEKPGGP
Sbjct: 898 LISMDTTPDTVYQVESTGAVVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGP 957
Query: 932 TEYSCKLQLPCNAPFEKLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEQ 991
TEYSCKLQLPCNAPFE LEGP+CSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGE+
Sbjct: 958 TEYSCKLQLPCNAPFEDLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEE 1017
Query: 992 QEKVDQNDEGEPLPGTARHREFYPEGVADILQGEWILSGRDGCTGSKLFHLFMYTVKCVN 1051
+EKV+QND+G+PLPGTARHREFYPEGVA+ILQGEWIL+GRD + SK HL+MYTV+CVN
Sbjct: 1018 KEKVEQNDDGDPLPGTARHREFYPEGVANILQGEWILTGRDTFSDSKFLHLYMYTVQCVN 1077
Query: 1052 NGISKDPFLTQVSDFAVLFSSELDAE--------------------------------LA 1079
G SKD FLTQVS+FAVLF SELDAE LA
Sbjct: 1078 VGSSKDLFLTQVSNFAVLFGSELDAEVLSMSMDLFIARTITTKASLVFRGLCDITESQLA 1137
Query: 1080 SLKNFHVRLMSIVLDVDVEPYTTPWDPAKAYLFVPVVSDKSVDPMNELDWDLVEKITKTD 1139
SLK+FHVRLMSIVLDVDVEP TTPWDPAKAYLFVPVV DKS DP+ E+DW +V +I +TD
Sbjct: 1138 SLKSFHVRLMSIVLDVDVEPTTTPWDPAKAYLFVPVVGDKSEDPVKEIDWVMVRRIIQTD 1197
Query: 1140 AWTNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAIAQFDVV 1199
AW NPLQRARPDVYLGTNER LGGDRREYGFGKLRHGMAFGQKSHPTYGIRGA+AQFDVV
Sbjct: 1198 AWNNPLQRARPDVYLGTNERALGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAVAQFDVV 1257
Query: 1200 KASGLVPDREAMQIH-NADMPTGKLMMADSCANAGDLEGRIVTAAHSGKRFYVESIRYEM 1258
KASGLVPDR +++ + D P GKL+MAD+ DL GRIVTAAHSGKRFYV+SIRY+
Sbjct: 1258 KASGLVPDRGDVELQRHPDQPKGKLLMADTSMAVEDLVGRIVTAAHSGKRFYVDSIRYDT 1317
Query: 1259 TAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYCKNLLSPRFEHS 1318
TAE+SFPRKEGYLGPLEYSSYADYYKQKYGVEL++K QPLIRGRGVSYCKNLLSPRFEH+
Sbjct: 1318 TAENSFPRKEGYLGPLEYSSYADYYKQKYGVELVYKHQPLIRGRGVSYCKNLLSPRFEHA 1377
Query: 1319 EEQEGEGEEILDKTYYVFLPPELCFIHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKDKI 1378
E E EE LDKTYYV+LPPELC +HPLPGSLVRGAQRLPSIMRRVESMLLAIQLK I
Sbjct: 1378 ---ENESEETLDKTYYVYLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKHMI 1434
Query: 1379 NYPVPASKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQ 1438
NYPVPASKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYP+KHEGQLTRMRQ
Sbjct: 1435 NYPVPASKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPRKHEGQLTRMRQ 1494
Query: 1439 QMVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAE 1498
QMVSN+VLYQYALSK LQSYIQADRFAPSRWAAPGVLPV+DED KDG+SS FDQ+KS ++
Sbjct: 1495 QMVSNMVLYQYALSKKLQSYIQADRFAPSRWAAPGVLPVYDEDMKDGESSFFDQDKSNSD 1554
Query: 1499 DKLGTDKNYNEYEDDDMEDGELEGDSSSYRVLSSKTLADVVEALIGVYYVEGGKDAANHL 1558
D + + +ED ++ED E+E DSSSYRVLSSKTLADVVEALIGVYYVEGGK AANHL
Sbjct: 1555 GVSEMDLHLDVFEDGEVEDREVESDSSSYRVLSSKTLADVVEALIGVYYVEGGKTAANHL 1614
Query: 1559 MKWIGIQVESDPEEVGCPSRPACVPESVLRSVDFHALEDALKIKFKDRGLLVEAITHASR 1618
MKWIGI+VE D EV C +R + +PES+LRSVDF ALE AL IKF+DRGLLVEAITHASR
Sbjct: 1615 MKWIGIKVEFDAGEVECGTRQSNLPESILRSVDFDALEGALNIKFQDRGLLVEAITHASR 1674
Query: 1619 PSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHK 1678
PS GVSCYQRLEFVGDAVLDHLIT+HLFF+YT+LPPGRLTDLRAAAVNNENFARVAVKH
Sbjct: 1675 PSCGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHN 1734
Query: 1679 LHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLD 1738
LH+HLRHGSSAL++QIRDFVKEV +ELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLD
Sbjct: 1735 LHIHLRHGSSALEKQIRDFVKEVQDELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLD 1794
Query: 1739 SGRDTSVVWQVFQPLLDPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNLATVEVY 1798
SGRDT+VVW+VFQPLL PMVTPETLPMHPVRELQERCQQQAEGLEYKA+R GNLATVEV+
Sbjct: 1795 SGRDTAVVWRVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKATRIGNLATVEVF 1854
Query: 1799 IDGVQVGVAQNPQKKMAQKLAARNALAVLKEKETAEAKEKGDENGKKRKNGTQTFTRQTL 1858
IDGVQ+G+AQNPQKKMAQKLAARNALAVLKEKE +AKEK ++NGKK+KNG QTFTRQTL
Sbjct: 1855 IDGVQIGIAQNPQKKMAQKLAARNALAVLKEKEMDDAKEKXEDNGKKKKNGNQTFTRQTL 1914
Query: 1859 NDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSA 1918
NDICLRRNWPMP YRCV EGGPAHAKRFT+AVRVNTTDKGWTDECVGEPMPSVKKAKDSA
Sbjct: 1915 NDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNTTDKGWTDECVGEPMPSVKKAKDSA 1974
Query: 1919 AVLLLELLNKWYS 1931
AVLLLELLNK YS
Sbjct: 1975 AVLLLELLNKLYS 1987
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356571277|ref|XP_003553805.1| PREDICTED: endoribonuclease Dicer homolog 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3066 bits (7948), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1562/1957 (79%), Positives = 1688/1957 (86%), Gaps = 73/1957 (3%)
Query: 20 SYWLDACEDILIDEFVNFDTS--VVQDSVDNTSNQDSLSNDFFGGIDHILDSIKNGSGLP 77
SYWLDACEDI D+F++FD S VV D DN SNQD FFGGID ILDSIKNG+GLP
Sbjct: 14 SYWLDACEDISCDDFIDFDVSSIVVSDQPDNPSNQD-----FFGGIDKILDSIKNGAGLP 68
Query: 78 --NSNGNLLKNGSEDSTGGENHQAEGLILLSNNGSDKDGVDRKRKLENCENVNGYLVNGK 135
++ N + ++GG + L +N + +D D N + NG
Sbjct: 69 LNHAAAEPPSNVTAAASGGAE------VCLPSNATPEDSFDHSGGAA-LSNGSSKQSNGN 121
Query: 136 AGGRLSDHFTKENGVHRDNGNNDHEASRIRDFDSEDRFSKRARVSVCKNESQYSSRGQYC 195
G L D +++E G NG DFD E+R SKRAR+ N+ Y RG Y
Sbjct: 122 ETGVLVD-YSQERGTPTLNGG--------LDFDGEERCSKRARLGGYNNDRPYHGRGNYQ 172
Query: 196 SSDKDRVFGRKRLR---DLDDIGRRDRDPM-RRREHYNGSSRKDVRDKDFRDREPRGYWE 251
+++R F R R D+I RRD+D R+REH R+DVRD+D+RDRE RGYWE
Sbjct: 173 GKERERCFSNNRKRPRGGRDEIDRRDKDGGGRKREHCGAVGRRDVRDRDWRDRETRGYWE 232
Query: 252 RDRLGSNGMVFRLGSWEADHNRAGKEANGINQECNGKVGKKSE-AKEKMPEEQARPYQLD 310
RD+ GS MVFR G+WE D NR K A + E NG + KKSE AKE++PEE+AR YQLD
Sbjct: 233 RDKSGSTDMVFRTGAWEPDCNREDKMAIDMKLEKNGNLDKKSEEAKERVPEEKARQYQLD 292
Query: 311 VLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEV 370
VLEQAK+KNTIAFLETGAGKTLIAVLLI+SI L +QNKKMLAVFLVPKVPLVYQQAEV
Sbjct: 293 VLEQAKRKNTIAFLETGAGKTLIAVLLIKSIQESLHKQNKKMLAVFLVPKVPLVYQQAEV 352
Query: 371 IREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLL 430
IRE+TGY VGHYCGEMGQDFWDA+RWQREFDTK VLVMTAQILLNILRHSIIKMEAINLL
Sbjct: 353 IRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQILLNILRHSIIKMEAINLL 412
Query: 431 ILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLE 490
ILDECHHAVKKHPYSLVMSEFYHTT KE RPSVFGMTASPVNLKGVSSQVDCAIKI NLE
Sbjct: 413 ILDECHHAVKKHPYSLVMSEFYHTTPKENRPSVFGMTASPVNLKGVSSQVDCAIKIRNLE 472
Query: 491 SKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRR 550
SKLDS+VCTIKDRKELEKHVPMPSEVVVEYDKAASL LHEQ+KQMEV VEEAA+ SSRR
Sbjct: 473 SKLDSIVCTIKDRKELEKHVPMPSEVVVEYDKAASLCYLHEQIKQMEVEVEEAAKCSSRR 532
Query: 551 SKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQS 610
SKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRA+NYALGELGQWCAYKVAQS
Sbjct: 533 SKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAVNYALGELGQWCAYKVAQS 592
Query: 611 FLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTN 670
FL ALQNDERANYQLDVKFQE+YLSKVVSLL+C+L EGAVS K+A + DSENG V+ G+
Sbjct: 593 FLAALQNDERANYQLDVKFQETYLSKVVSLLKCQLSEGAVSDKNAGIDDSENGAVQSGSE 652
Query: 671 EIEEGE--LLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFV 728
E E L DSHVVSGGEHVDVIIGAAVADGKVTPKVQ+LIKILLKYQHTEDFRAIIFV
Sbjct: 653 HEEMEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQHTEDFRAIIFV 712
Query: 729 ERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATS 788
ERVV+ALVLPKVFAELPSLSFVK ASLIGHNNSQEMRT+QMQ+TIAKFRDGRVTLLVATS
Sbjct: 713 ERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTYQMQDTIAKFRDGRVTLLVATS 772
Query: 789 VAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIERGNLSHATFLRNARN 848
VAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILM+ER NLSH FLRNARN
Sbjct: 773 VAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERDNLSHEAFLRNARN 832
Query: 849 SEETLRKEAIERTDLSHLKDTSRLISVDAVPGTVYQVESTGAVVSLNSAVGLIHFYCSQL 908
SEETLRKEAIERTDLSHLKDTSRLISVD PGTVYQV+STGAVVSLNSAVGLIHFYCSQL
Sbjct: 833 SEETLRKEAIERTDLSHLKDTSRLISVDTRPGTVYQVKSTGAVVSLNSAVGLIHFYCSQL 892
Query: 909 PSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFEKLEGPVCSSMRLAQQAVCLAA 968
PSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFE LEGP+CSSMRLAQQAVCLAA
Sbjct: 893 PSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFENLEGPICSSMRLAQQAVCLAA 952
Query: 969 CKKLHEMGAFTDMLLPDKGSGEQQEKVDQNDEGEPLPGTARHREFYPEGVADILQGEWIL 1028
CKKLHEMGAFTDMLLPDKGSG ++EK +Q DEG+PLPGTARHREFYPEGVADIL+GEWIL
Sbjct: 953 CKKLHEMGAFTDMLLPDKGSGGEKEKDEQTDEGDPLPGTARHREFYPEGVADILKGEWIL 1012
Query: 1029 SGRDGCTGSKLFHLFMYTVKCVNNGISKDPFLTQVSDFAVLFSSELDAE----------- 1077
SG+D C SKL HL+MY VKC N G SKDPFLTQVS+FAVLF +ELDAE
Sbjct: 1013 SGKDACNNSKLLHLYMYAVKCENLGHSKDPFLTQVSNFAVLFGNELDAEVLSMSMDLFIA 1072
Query: 1078 ---------------------LASLKNFHVRLMSIVLDVDVEPYTTPWDPAKAYLFVPVV 1116
LASLK+FHVRLMSIVLDVDVEP TTPWDPAKAYLFVP+V
Sbjct: 1073 RTVTTKSSLVFRGLISITESQLASLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPMV 1132
Query: 1117 SDKSVDPMNELDWDLVEKITKTDAWTNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHG 1176
DKSVDP N++DW LVE I DAW NPLQ+ARPDVYLGTNERTLGGDRREYGFGKLRHG
Sbjct: 1133 GDKSVDPTNQIDWHLVETIIGADAWKNPLQKARPDVYLGTNERTLGGDRREYGFGKLRHG 1192
Query: 1177 MAFGQKSHPTYGIRGAIAQFDVVKASGLVPDREAMQIH-NADMPT-GKLMMADSCANAGD 1234
MAFGQKSHPTYGIRGA+AQFDVVKASGLVP+R+AMQ + +M T GKLMMAD+C NA D
Sbjct: 1193 MAFGQKSHPTYGIRGAVAQFDVVKASGLVPNRDAMQTQKHINMTTNGKLMMADTCTNAED 1252
Query: 1235 LEGRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFK 1294
L G+IVTAAHSGKRFYV+SIRY+M+AE+SFPRKEGYLGPLEYSSYADYYKQKYGV+LI++
Sbjct: 1253 LIGKIVTAAHSGKRFYVDSIRYDMSAENSFPRKEGYLGPLEYSSYADYYKQKYGVDLIYR 1312
Query: 1295 KQPLIRGRGVSYCKNLLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHPLPGSLVRG 1354
+QPLIRGRGVSYCKNLLSPRFEHS EGE EE DKTYYVFLPPELC +HPLPGSLVRG
Sbjct: 1313 QQPLIRGRGVSYCKNLLSPRFEHS---EGESEETHDKTYYVFLPPELCLVHPLPGSLVRG 1369
Query: 1355 AQRLPSIMRRVESMLLAIQLKDKINYPVPASKILEALTAASCQETFCYERAELLGDAYLK 1414
AQRLPSIMRRVESMLLA+QLK+ INYPV ASKILEALTAASCQETFCYERAELLGDAYLK
Sbjct: 1370 AQRLPSIMRRVESMLLAVQLKNMINYPVQASKILEALTAASCQETFCYERAELLGDAYLK 1429
Query: 1415 WVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGV 1474
WVVSRFLFLKYPQKHEGQLTRMRQQMVSN+VLYQYALSKGLQSYIQADRFAPSRWAAPGV
Sbjct: 1430 WVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALSKGLQSYIQADRFAPSRWAAPGV 1489
Query: 1475 LPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSSYRVLSSKT 1534
LPVFDEDTKDG+SSLFDQE+S+++ + D + + YE D+MEDGELE DSSSYRVLSSKT
Sbjct: 1490 LPVFDEDTKDGESSLFDQERSISKIER-MDCHTDGYE-DEMEDGELESDSSSYRVLSSKT 1547
Query: 1535 LADVVEALIGVYYVEGGKDAANHLMKWIGIQVESDPEEVGCPSRPACVPESVLRSVDFHA 1594
LADVVEALIGVYYVEGGK+AANHLMKW+GIQ+E DP+ + C +P VP+S+LRSVDF A
Sbjct: 1548 LADVVEALIGVYYVEGGKNAANHLMKWMGIQIEFDPDTMDCTRKPFNVPDSILRSVDFDA 1607
Query: 1595 LEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPP 1654
LE AL +KFKDRGLLVE+ITHASRPSSGVSCYQRLEFVGDAVLDHLIT+HLFF+YTNLPP
Sbjct: 1608 LEGALNMKFKDRGLLVESITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTNLPP 1667
Query: 1655 GRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFG 1714
GRLTDLRAAAVNNENFARVAVKH LHVHLRHGSSAL++QI++FVKEV +EL KPGFNSFG
Sbjct: 1668 GRLTDLRAAAVNNENFARVAVKHNLHVHLRHGSSALEKQIKEFVKEVQDELSKPGFNSFG 1727
Query: 1715 LGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMVTPETLPMHPVRELQER 1774
LGDCKAPKVLGDI+ESIAGAIFLDSGRDT+VVW+VFQPLL PMVTPETLPMHPVRELQER
Sbjct: 1728 LGDCKAPKVLGDILESIAGAIFLDSGRDTTVVWKVFQPLLHPMVTPETLPMHPVRELQER 1787
Query: 1775 CQQQAEGLEYKASRSGNLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEKETAE 1834
CQQQAEGLEYKASR GNLATVEV+IDGVQVG AQNPQKKMAQKLAARNALA LKEKE +
Sbjct: 1788 CQQQAEGLEYKASRIGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALAALKEKEVGK 1847
Query: 1835 AKEKGDENGKKRKNGTQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNT 1894
+EK D+NGK KNG QTFTRQTLNDICLRRNWPMP YRCV EGGPAHAKRFT+AVRVNT
Sbjct: 1848 TQEKNDDNGK--KNGNQTFTRQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNT 1905
Query: 1895 TDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKWYS 1931
TDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNK YS
Sbjct: 1906 TDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKLYS 1942
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356504203|ref|XP_003520888.1| PREDICTED: endoribonuclease Dicer homolog 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3055 bits (7919), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1564/1960 (79%), Positives = 1686/1960 (86%), Gaps = 77/1960 (3%)
Query: 20 SYWLDACEDILIDEFVNFD-TSVVQDSVDNTSNQDSLSNDFFGGIDHILDSIKNGSGLPN 78
SYWLDACEDI D+F++FD +S+V D DN SNQD FFGGID ILDSIKNG+GLP
Sbjct: 14 SYWLDACEDISCDDFIDFDVSSIVSDQPDNPSNQD-----FFGGIDKILDSIKNGAGLP- 67
Query: 79 SNGNLLKNGSEDSTGGENHQAEGLILLSNNGSDKDGVDRKRKLENCENV---NGY--LVN 133
L + E N A G + L +N + +DG ++ V NG L N
Sbjct: 68 -----LNHAVEPPNN--NGTAAGEVCLPSNATLEDGAPAADAFDHSGGVARSNGSSKLSN 120
Query: 134 GKAGGRLSDHFTKENGVHRDNGNNDHEASRIRDFDSEDRFSKRARVSVCKNESQYSSRGQ 193
G G L + +++E G NG +D FD E+R SKRA + NE Y RG
Sbjct: 121 GNETGVLVN-YSQERGAPPLNGGHD--------FDGEERCSKRAWLGGYNNERPYYCRGN 171
Query: 194 YCSSDKDRVFG---RKRLR-DLDDIGRRDRDPM-RRREHYNGSSRKDVRDKDFRDREPRG 248
Y +++R F RKR R D D+I R+D+D R+REHY +R+DVRD+D RDRE RG
Sbjct: 172 YQGKERERCFNNNNRKRPRGDRDEIDRKDKDGGGRKREHYGAVARRDVRDRDCRDRETRG 231
Query: 249 YWERDRLGSNGMVFRLGSWEADHNRAGKEANGINQECNGKVGKKSE-AKEKMPEEQARPY 307
YWERD+ GS M+FR G+WE DHNR K E GK+ KKSE A E++PEE+AR Y
Sbjct: 232 YWERDKSGSTDMIFRTGAWEPDHNRDDKMVIDTKLENYGKLDKKSEDAIERVPEEKARQY 291
Query: 308 QLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQ 367
QLDVLEQ+K+KNTIAFLETGAGKTLIAVLLI+SI + LQ+QNKKMLAVFLVPKVPLVYQQ
Sbjct: 292 QLDVLEQSKRKNTIAFLETGAGKTLIAVLLIKSIQDSLQKQNKKMLAVFLVPKVPLVYQQ 351
Query: 368 AEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAI 427
AEVIRE+TGY VGHYCGEMGQDFWDA+RWQREFDTK VLVMTAQILLNILRHSIIKMEAI
Sbjct: 352 AEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQILLNILRHSIIKMEAI 411
Query: 428 NLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKIC 487
NLLILDECHHAVKKHPYSLVMSEFYHTT KE RPSVFGMTASPVNLKGVSSQVDCAIKI
Sbjct: 412 NLLILDECHHAVKKHPYSLVMSEFYHTTPKENRPSVFGMTASPVNLKGVSSQVDCAIKIR 471
Query: 488 NLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSS 547
NLESKLDS+VCTIKDRKELEKHVPMPSEVVVEYDKAASL LHEQ+KQMEV VEEAA+ S
Sbjct: 472 NLESKLDSIVCTIKDRKELEKHVPMPSEVVVEYDKAASLCYLHEQIKQMEVEVEEAAKYS 531
Query: 548 SRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKV 607
SRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRA+NYALGELGQWCAYKV
Sbjct: 532 SRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAVNYALGELGQWCAYKV 591
Query: 608 AQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEG 667
A SFL ALQNDERANYQLDVKFQE+YLSKVVSLL+C+L EGA S K+A + DSENG +
Sbjct: 592 ALSFLAALQNDERANYQLDVKFQETYLSKVVSLLKCQLSEGAASDKNAGIDDSENGAAQS 651
Query: 668 GTNEIEEGE--LLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAI 725
G+ E E L DSHVVSGGEHVDVIIGAAVADGKVTPKVQ+LIKILLKYQHTEDFRAI
Sbjct: 652 GSEHEEMEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQHTEDFRAI 711
Query: 726 IFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLV 785
IFVERVV+ALVLPKVFAELPSLSFVK ASLIGHNNSQEMRT+QMQ+TIAKFRDGRVTLLV
Sbjct: 712 IFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTYQMQDTIAKFRDGRVTLLV 771
Query: 786 ATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIERGNLSHATFLRN 845
ATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILM+ER NLSH FLRN
Sbjct: 772 ATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERDNLSHEAFLRN 831
Query: 846 ARNSEETLRKEAIERTDLSHLKDTSRLISVDAVPGTVYQVESTGAVVSLNSAVGLIHFYC 905
A+NSEETLRKEAIERTDLSHLKDTSRLISVD PGTVYQV+STGAVVSLNSAVGLIHFYC
Sbjct: 832 AKNSEETLRKEAIERTDLSHLKDTSRLISVDTRPGTVYQVKSTGAVVSLNSAVGLIHFYC 891
Query: 906 SQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFEKLEGPVCSSMRLAQQAVC 965
SQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFE LEGP+CSSMRLAQQAVC
Sbjct: 892 SQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFENLEGPICSSMRLAQQAVC 951
Query: 966 LAACKKLHEMGAFTDMLLPDKGSGEQQEKVDQNDEGEPLPGTARHREFYPEGVADILQGE 1025
LAACKKLHEMGAFTDMLLPDKGSG ++EK +Q DEG+PLPGTARHREFYPEGVADIL+GE
Sbjct: 952 LAACKKLHEMGAFTDMLLPDKGSGGEREKDEQTDEGDPLPGTARHREFYPEGVADILKGE 1011
Query: 1026 WILSGRDGCTGSKLFHLFMYTVKCVNNGISKDPFLTQVSDFAVLFSSELDAE-------- 1077
WILS +D C KL HL+MY VKC N G SKDPFLTQVS+FAVLF +ELDAE
Sbjct: 1012 WILSEKDACNNYKLLHLYMYAVKCENLGHSKDPFLTQVSNFAVLFGNELDAEVLSMSMDL 1071
Query: 1078 ------------------------LASLKNFHVRLMSIVLDVDVEPYTTPWDPAKAYLFV 1113
LASLK+FHVRLMSIVLDVDVEP TTPWDPAKAYLFV
Sbjct: 1072 FIARTVTTKASLVFSGLINITESQLASLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFV 1131
Query: 1114 PVVSDKSVDPMNELDWDLVEKITKTDAWTNPLQRARPDVYLGTNERTLGGDRREYGFGKL 1173
P+V DKSVDPMN++DW LVE I DAW NPLQ+ARPDVYLGTNERTLGGDRREYGFGKL
Sbjct: 1132 PMVGDKSVDPMNQIDWHLVETIIGADAWKNPLQKARPDVYLGTNERTLGGDRREYGFGKL 1191
Query: 1174 RHGMAFGQKSHPTYGIRGAIAQFDVVKASGLVPDREAMQIH-NADMPT-GKLMMADSCAN 1231
RHGMAFGQKSHPTYGIRGA+AQFDVVKASGLVP+R+AMQ + +M T GKLMMAD C N
Sbjct: 1192 RHGMAFGQKSHPTYGIRGAVAQFDVVKASGLVPNRDAMQTQKHINMTTNGKLMMADICTN 1251
Query: 1232 AGDLEGRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVEL 1291
A DL GRIVTAAHSGKRFYV+SI Y+M+AE+SFPRKEGYLGPLEYSSYADYYKQKYGV L
Sbjct: 1252 AEDLVGRIVTAAHSGKRFYVDSICYDMSAENSFPRKEGYLGPLEYSSYADYYKQKYGVNL 1311
Query: 1292 IFKKQPLIRGRGVSYCKNLLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHPLPGSL 1351
I+K+QPLIRGRGVSYCKNLLSPRFEHSE GE EEI DKTYYVFLPPELC +HPLPGSL
Sbjct: 1312 IYKQQPLIRGRGVSYCKNLLSPRFEHSE---GESEEIHDKTYYVFLPPELCLVHPLPGSL 1368
Query: 1352 VRGAQRLPSIMRRVESMLLAIQLKDKINYPVPASKILEALTAASCQETFCYERAELLGDA 1411
VRGAQRLPSIMRRVESMLLA+QLK+ INYPV ASKIL ALTAASCQETFCYERAELLGDA
Sbjct: 1369 VRGAQRLPSIMRRVESMLLAVQLKNMINYPVLASKILGALTAASCQETFCYERAELLGDA 1428
Query: 1412 YLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQADRFAPSRWAA 1471
YLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSN+VLYQYALSKGLQSYIQADRFAPSRWAA
Sbjct: 1429 YLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALSKGLQSYIQADRFAPSRWAA 1488
Query: 1472 PGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSSYRVLS 1531
PGVLPVFDEDTKDG+SSLFDQE+S+++ + D + N YED+ MEDGELE DSSSYRVLS
Sbjct: 1489 PGVLPVFDEDTKDGESSLFDQERSISKIER-MDCHTNGYEDE-MEDGELESDSSSYRVLS 1546
Query: 1532 SKTLADVVEALIGVYYVEGGKDAANHLMKWIGIQVESDPEEVGCPSRPACVPESVLRSVD 1591
SKTLADVVEALIGVYYVEGGK+AANHLMKWIGIQ+E DP+ + C +P VP+S+LRSVD
Sbjct: 1547 SKTLADVVEALIGVYYVEGGKNAANHLMKWIGIQIEFDPDTMECTKKPFNVPDSILRSVD 1606
Query: 1592 FHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTN 1651
F ALE AL +KF DRGLLVE+ITHASRPSSGVSCYQRLEFVGDAVLDHLIT+HLFF+YTN
Sbjct: 1607 FDALEGALNMKFNDRGLLVESITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTN 1666
Query: 1652 LPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFN 1711
LPPGRLTDLRAAAVNNENFARVAVKH LHVHLRHGSSAL++QI++FVKEV EL KPGFN
Sbjct: 1667 LPPGRLTDLRAAAVNNENFARVAVKHNLHVHLRHGSSALEKQIKEFVKEVQVELSKPGFN 1726
Query: 1712 SFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMVTPETLPMHPVREL 1771
SFGLGDCKAPKVLGDIVESIAGAIFLDSGRDT+VVW+VFQPLL PMVTPETLPMHPVREL
Sbjct: 1727 SFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTTVVWKVFQPLLHPMVTPETLPMHPVREL 1786
Query: 1772 QERCQQQAEGLEYKASRSGNLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEKE 1831
QERCQQQAEGLEYKASR GNLATVEV+IDGVQVG AQNPQKKMAQKLAARNALA LKEKE
Sbjct: 1787 QERCQQQAEGLEYKASRIGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALAALKEKE 1846
Query: 1832 TAEAKEKGDENGKKRKNGTQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVR 1891
+ +EK DENGK KNG QTFTRQTLNDICLRRNWPMP YRCV EGGPAHAKRFT+AVR
Sbjct: 1847 VGKTQEKNDENGK--KNGNQTFTRQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVR 1904
Query: 1892 VNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKWYS 1931
VNTTD+GWTDECVGEPMPSVKKAKDSAAVLLLELLNK YS
Sbjct: 1905 VNTTDRGWTDECVGEPMPSVKKAKDSAAVLLLELLNKLYS 1944
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|374259482|gb|AEZ02177.1| Dicer [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2905 bits (7531), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1461/1965 (74%), Positives = 1643/1965 (83%), Gaps = 115/1965 (5%)
Query: 1 MEGETRVSDIVGGGESNQSSYWLDACEDI---LIDEFVN-FDTSVVQDSVDNTSNQDSLS 56
ME E R + I + SYWLDACEDI LID+ V+ FD S V +V+ +++++ +
Sbjct: 3 MEDEPREATI-------KPSYWLDACEDISCDLIDDLVSEFDPSSV--AVNESTDENGVI 53
Query: 57 NDFFGGIDHILDSIKNGSGLPNSNGNLLKNGSEDSTGGENHQAEGLILLSNNGSDKDGVD 116
NDFFGGIDHILDSIKNG GLPN NG D+
Sbjct: 54 NDFFGGIDHILDSIKNGGGLPN-------NGVSDTNS----------------------- 83
Query: 117 RKRKLENCENVNGYLVNGKAGGRLSDHFTKENGVHRDNGNNDHEASRIRDFDSE--DRFS 174
+N V + ++ KENG+ ++ G D +F E D+
Sbjct: 84 ---------QINEVTVTPQV---IAKETVKENGLQKNGGKRD-------EFSKEEGDKDR 124
Query: 175 KRARVSVCKNE-SQYSSRGQYCSS-DKDRVFGRKRLRDLDDIGRRDRDPMRRREHYNGSS 232
KRARV ++E S S RG +S + DR RKR R+ D+ G ++RE N
Sbjct: 125 KRARVCSYQSERSNLSGRGHVNNSREGDRFMNRKRTRNWDEAGNNK----KKRECNN--- 177
Query: 233 RKDVRDKDFRDREPRGYWERDRLGSNGMVFRLGSWEADHNRAGKEANGINQECNGKV--- 289
+D RDRE RGYWERD++GSN +V+R G+WEADH R K+ +G N+EC+ K
Sbjct: 178 ----YRRDGRDREVRGYWERDKVGSNELVYRSGTWEADHERDVKKVSGGNRECDVKAEEN 233
Query: 290 -GKKSEAKEKMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQ 348
K E KEK+ EEQAR YQLDVLEQAK KNTIAFLETGAGKTLIA+LLI+S+ DL Q
Sbjct: 234 KSKPEERKEKVVEEQARRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQ 293
Query: 349 NKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVM 408
N+KML+VFLVPKVPLVYQQAEVIR QT + VGHYCGEMGQDFWD++RWQREF++KQVLVM
Sbjct: 294 NRKMLSVFLVPKVPLVYQQAEVIRNQTCFQVGHYCGEMGQDFWDSRRWQREFESKQVLVM 353
Query: 409 TAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTA 468
TAQILLNILRHSII+ME I+LLILDECHHAVKKHPYSLVMSEFYHTT K+KRP++FGMTA
Sbjct: 354 TAQILLNILRHSIIRMETIDLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPAIFGMTA 413
Query: 469 SPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWS 528
SPVNLKGVSSQVDCAIKI NLE+KLDS VCTIKDRKELEKHVPMPSE+VVEYDKAA++WS
Sbjct: 414 SPVNLKGVSSQVDCAIKIRNLETKLDSTVCTIKDRKELEKHVPMPSEIVVEYDKAATMWS 473
Query: 529 LHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQK 588
LHE +KQM AVEEAAQ+SSR+SKWQFMGARDAGAK+ELRQVYGVSERTESDGAANLI K
Sbjct: 474 LHETIKQMIAAVEEAAQASSRKSKWQFMGARDAGAKDELRQVYGVSERTESDGAANLIHK 533
Query: 589 LRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEG 648
LRAINY L ELGQWCAYKV QSFL+ALQ+DER N+Q+DVKFQESYLS+VVSLLQCEL+EG
Sbjct: 534 LRAINYTLAELGQWCAYKVGQSFLSALQSDERVNFQVDVKFQESYLSEVVSLLQCELLEG 593
Query: 649 AVSKKDAKVV-DSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQ 707
A ++K A V ENG +E+EEGEL D VVSGGEHVD +IGAAVADGKVTPKVQ
Sbjct: 594 AAAEKVAAEVGKPENG---NAHDEMEEGELPDDPVVSGGEHVDEVIGAAVADGKVTPKVQ 650
Query: 708 SLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTF 767
SLIK+LLKYQHT DFRAI+FVERVVAALVLPKVFAELPSLSF++ AS+IGHNNSQEM++
Sbjct: 651 SLIKLLLKYQHTADFRAIVFVERVVAALVLPKVFAELPSLSFIRCASMIGHNNSQEMKSS 710
Query: 768 QMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827
QMQ+TI+KFRDG VTLLVATSVAEEGLDIRQCNVV+RFDLAKTVLAYIQSRGRARKPGSD
Sbjct: 711 QMQDTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARKPGSD 770
Query: 828 YILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAVPGTVYQVES 887
YILM+ERGN+SHA FLRNARNSEETLRKEAIERTDLSHLKDTSRLIS+DAVPGTVY+VE+
Sbjct: 771 YILMVERGNVSHAAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISIDAVPGTVYKVEA 830
Query: 888 TGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFE 947
TGA+VSLNSAVGL+HFYCSQLP DRY+ILRPEF ME+HEKPGG TEYSC+LQLPCNAPFE
Sbjct: 831 TGAMVSLNSAVGLVHFYCSQLPGDRYAILRPEFSMEKHEKPGGHTEYSCRLQLPCNAPFE 890
Query: 948 KLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEQQEKVDQNDEGEPLPGT 1007
LEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSG+ EK DQ+DEGEP+PGT
Sbjct: 891 ILEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGQDAEKADQDDEGEPVPGT 950
Query: 1008 ARHREFYPEGVADILQGEWILSGRDGCTGSKLFHLFMYTVKCVNNGISKDPFLTQVSDFA 1067
ARHREFYPEGVAD+L+GEW+ SG++ C SKLFHL+MY V+CV+ G SKDPFL++VS+FA
Sbjct: 951 ARHREFYPEGVADVLKGEWVSSGKEVCESSKLFHLYMYNVRCVDFGSSKDPFLSEVSEFA 1010
Query: 1068 VLFSSELDAE---------LASLKNFHVRLMSIVLDVDVEPYTTPWDPAKAYLFVPVVSD 1118
+LF +ELDAE L+SLK FHVRLMSIVLDVDVEP TTPWDPAKAYLFVPV +
Sbjct: 1011 ILFGNELDAEGSLDITENQLSSLKKFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPVTDN 1070
Query: 1119 KSVDPMNELDWDLVEKITKTDAWTNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHGMA 1178
S++P+ ++W+LVEKITKT AW NPLQRARPDVYLGTNERTLGGDRREYGFGKLRH +
Sbjct: 1071 TSMEPIKGINWELVEKITKTTAWDNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHNIV 1130
Query: 1179 FGQKSHPTYGIRGAIAQFDVVKASGLVPDREAMQIH-NADMPTGKLMMADSCANAGDLEG 1237
FGQKSHPTYGIRGA+A FDVV+ASGL+P R+A + D+ GKLMMAD C A DL G
Sbjct: 1131 FGQKSHPTYGIRGAVASFDVVRASGLLPVRDAFEKEVEEDLSKGKLMMADGCMVAEDLIG 1190
Query: 1238 RIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQP 1297
+IVTAAHSGKRFYV+SI Y+M+AE+SFPRKEGYLGPLEY++YADYYKQKYGV+L K+QP
Sbjct: 1191 KIVTAAHSGKRFYVDSICYDMSAETSFPRKEGYLGPLEYNTYADYYKQKYGVDLNCKQQP 1250
Query: 1298 LIRGRGVSYCKNLLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHPLPGSLVRGAQR 1357
LI+GRGVSYCKNLLSPRF EQ GE E +LDKTYYVFLPPELC +HPL GSL+RGAQR
Sbjct: 1251 LIKGRGVSYCKNLLSPRF----EQSGESETVLDKTYYVFLPPELCVVHPLSGSLIRGAQR 1306
Query: 1358 LPSIMRRVESMLLAIQLKDKINYPVPASKILEALTAASCQETFCYERAELLGDAYLKWVV 1417
LPSIMRRVESMLLA+QLK+ I+YP+P SKILEALTAASCQETFCYERAELLGDAYLKWVV
Sbjct: 1307 LPSIMRRVESMLLAVQLKNLISYPIPTSKILEALTAASCQETFCYERAELLGDAYLKWVV 1366
Query: 1418 SRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPV 1477
SRFLFLKYPQKHEGQLTRMRQQMVSN+VLYQ+AL KGLQSYIQADRFAPSRW+APGV PV
Sbjct: 1367 SRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPGVPPV 1426
Query: 1478 FDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSSYRVLSSKTLAD 1537
FDEDTKDG SS FD+E+ K +++N + +ED +MEDGELEGD SSYRVLSSKTLAD
Sbjct: 1427 FDEDTKDGGSSFFDEEQ-----KPVSEENSDVFEDGEMEDGELEGDLSSYRVLSSKTLAD 1481
Query: 1538 VVEALIGVYYVEGGKDAANHLMKWIGIQVESDPEEVGCPSRPACVPESVLRSVDFHALED 1597
VVEALIGVYYVEGGK AANHLMKWIGI VE DP+EV + VPESVL+S+DF LE
Sbjct: 1482 VVEALIGVYYVEGGKIAANHLMKWIGIHVEDDPDEVDGTLKNVNVPESVLKSIDFVGLER 1541
Query: 1598 ALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRL 1657
ALK +FK++GLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLIT+HLFF+YT+LPPGRL
Sbjct: 1542 ALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLPPGRL 1601
Query: 1658 TDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGD 1717
TDLRAAAVNNENFARVAVKHKLH++LRHGSSAL++QIR+FVKEV E KPGFNSFGLGD
Sbjct: 1602 TDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSKPGFNSFGLGD 1661
Query: 1718 CKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMVTPETLPMHPVRELQERCQQ 1777
CKAPKVLGDIVESIAGAIFLDSG+DT+ W+VFQPLL PMVTPETLPMHPVRELQERCQQ
Sbjct: 1662 CKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERCQQ 1721
Query: 1778 QAEGLEYKASRSGNLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEKETAEAKE 1837
QAEGLEYKASRSGN ATVEV+IDGVQVGVAQNPQKKMAQKLAARNALA LKEKE AE+KE
Sbjct: 1722 QAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQKLAARNALAALKEKEIAESKE 1781
Query: 1838 KGDENGK-----------KRKNGTQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRF 1886
K NG +KNG Q FTRQTLNDICLR+NWPMP YRCV+EGGPAHAKRF
Sbjct: 1782 KHINNGNAGEDQGENENGNKKNGHQPFTRQTLNDICLRKNWPMPSYRCVKEGGPAHAKRF 1841
Query: 1887 TYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKWYS 1931
T+ VRVNT+D+GWTDEC+GEPMPSVKKAKDSAAVLLLELLNK +S
Sbjct: 1842 TFGVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNKTFS 1886
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15223286|ref|NP_171612.1| endoribonuclease Dicer [Arabidopsis thaliana] gi|34922211|sp|Q9SP32.2|DCL1_ARATH RecName: Full=Endoribonuclease Dicer homolog 1; AltName: Full=Dicer-like protein 1; Short=AtDCL1; AltName: Full=Protein ABNORMAL SUSPENSOR 1; AltName: Full=Protein CARPEL FACTORY; AltName: Full=Protein SHORT INTEGUMENTS 1; AltName: Full=Protein SUSPENSOR 1 gi|11559645|gb|AAG38019.1|AF292940_1 short integuments 1 [Arabidopsis thaliana] gi|11559647|gb|AAG38020.1|AF292941_1 short integuments 1 [Arabidopsis thaliana] gi|332189099|gb|AEE27220.1| endoribonuclease Dicer [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2898 bits (7513), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1461/1988 (73%), Positives = 1643/1988 (82%), Gaps = 138/1988 (6%)
Query: 1 MEGETRVSDIVGGGESNQSSYWLDACEDI---LIDEFVN-FDTSVVQDSVDNTSNQDSLS 56
ME E R + I + SYWLDACEDI LID+ V+ FD S V +V+ +++++ +
Sbjct: 3 MEDEPREATI-------KPSYWLDACEDISCDLIDDLVSEFDPSSV--AVNESTDENGVI 53
Query: 57 NDFFGGIDHILDSIKNGSGLPNSNGNLLKNGSEDSTGGENHQAEGLILLSNNGSDKDGVD 116
NDFFGGIDHILDSIKNG GLPN NG D+
Sbjct: 54 NDFFGGIDHILDSIKNGGGLPN-------NGVSDTNS----------------------- 83
Query: 117 RKRKLENCENVNGYLVNGKAGGRLSDHFTKENGVHRDNGNNDHEASRIRDFDSE--DRFS 174
+N V + ++ KENG+ ++ G D +F E D+
Sbjct: 84 ---------QINEVTVTPQV---IAKETVKENGLQKNGGKRD-------EFSKEEGDKDR 124
Query: 175 KRARVSVCKNE-SQYSSRGQYCSS-DKDRVFGRKRLRDLDDIGRRDRDPMRRREHYNGSS 232
KRARV ++E S S RG +S + DR RKR R+ D+ G ++RE N
Sbjct: 125 KRARVCSYQSERSNLSGRGHVNNSREGDRFMNRKRTRNWDEAGNNK----KKRECNN--- 177
Query: 233 RKDVRDKDFRDREPRGYWERDRLGSNGMVFRLGSWEADHNRAGKEANGINQECNGKV--- 289
+D RDRE RGYWERD++GSN +V+R G+WEADH R K+ +G N+EC+ K
Sbjct: 178 ----YRRDGRDREVRGYWERDKVGSNELVYRSGTWEADHERDVKKVSGGNRECDVKAEEN 233
Query: 290 -GKKSEAKEKMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQ 348
K E KEK+ EEQAR YQLDVLEQAK KNTIAFLETGAGKTLIA+LLI+S+ DL Q
Sbjct: 234 KSKPEERKEKVVEEQARRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQ 293
Query: 349 NKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVM 408
N+KML+VFLVPKVPLVYQQAEVIR QT + VGHYCGEMGQDFWD++RWQREF++KQVLVM
Sbjct: 294 NRKMLSVFLVPKVPLVYQQAEVIRNQTCFQVGHYCGEMGQDFWDSRRWQREFESKQVLVM 353
Query: 409 TAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTA 468
TAQILLNILRHSII+ME I+LLILDECHHAVKKHPYSLVMSEFYHTT K+KRP++FGMTA
Sbjct: 354 TAQILLNILRHSIIRMETIDLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPAIFGMTA 413
Query: 469 SPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWS 528
SPVNLKGVSSQVDCAIKI NLE+KLDS VCTIKDRKELEKHVPMPSE+VVEYDKAA++WS
Sbjct: 414 SPVNLKGVSSQVDCAIKIRNLETKLDSTVCTIKDRKELEKHVPMPSEIVVEYDKAATMWS 473
Query: 529 LHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQK 588
LHE +KQM AVEEAAQ+SSR+SKWQFMGARDAGAK+ELRQVYGVSERTESDGAANLI K
Sbjct: 474 LHETIKQMIAAVEEAAQASSRKSKWQFMGARDAGAKDELRQVYGVSERTESDGAANLIHK 533
Query: 589 LRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEG 648
LRAINY L ELGQWCAYKV QSFL+ALQ+DER N+Q+DVKFQESYLS+VVSLLQCEL+EG
Sbjct: 534 LRAINYTLAELGQWCAYKVGQSFLSALQSDERVNFQVDVKFQESYLSEVVSLLQCELLEG 593
Query: 649 AVSKKDAKVV-DSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQ 707
A ++K A V ENG +E+EEGEL D VVSGGEHVD +IGAAVADGKVTPKVQ
Sbjct: 594 AAAEKVAAEVGKPENG---NAHDEMEEGELPDDPVVSGGEHVDEVIGAAVADGKVTPKVQ 650
Query: 708 SLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTF 767
SLIK+LLKYQHT DFRAI+FVERVVAALVLPKVFAELPSLSF++ AS+IGHNNSQEM++
Sbjct: 651 SLIKLLLKYQHTADFRAIVFVERVVAALVLPKVFAELPSLSFIRCASMIGHNNSQEMKSS 710
Query: 768 QMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827
QMQ+TI+KFRDG VTLLVATSVAEEGLDIRQCNVV+RFDLAKTVLAYIQSRGRARKPGSD
Sbjct: 711 QMQDTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARKPGSD 770
Query: 828 YILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAVPGTVYQVES 887
YILM+ERGN+SHA FLRNARNSEETLRKEAIERTDLSHLKDTSRLIS+DAVPGTVY+VE+
Sbjct: 771 YILMVERGNVSHAAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISIDAVPGTVYKVEA 830
Query: 888 TGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFE 947
TGA+VSLNSAVGL+HFYCSQLP DRY+ILRPEF ME+HEKPGG TEYSC+LQLPCNAPFE
Sbjct: 831 TGAMVSLNSAVGLVHFYCSQLPGDRYAILRPEFSMEKHEKPGGHTEYSCRLQLPCNAPFE 890
Query: 948 KLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEQQEKVDQNDEGEPLPGT 1007
LEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSG+ EK DQ+DEGEP+PGT
Sbjct: 891 ILEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGQDAEKADQDDEGEPVPGT 950
Query: 1008 ARHREFYPEGVADILQGEWILSGRDGCTGSKLFHLFMYTVKCVNNGISKDPFLTQVSDFA 1067
ARHREFYPEGVAD+L+GEW+ SG++ C SKLFHL+MY V+CV+ G SKDPFL++VS+FA
Sbjct: 951 ARHREFYPEGVADVLKGEWVSSGKEVCESSKLFHLYMYNVRCVDFGSSKDPFLSEVSEFA 1010
Query: 1068 VLFSSELDAE--------------------------------LASLKNFHVRLMSIVLDV 1095
+LF +ELDAE L+SLK FHVRLMSIVLDV
Sbjct: 1011 ILFGNELDAEVLSMSMDLYVARAMITKASLAFKGSLDITENQLSSLKKFHVRLMSIVLDV 1070
Query: 1096 DVEPYTTPWDPAKAYLFVPVVSDKSVDPMNELDWDLVEKITKTDAWTNPLQRARPDVYLG 1155
DVEP TTPWDPAKAYLFVPV + S++P+ ++W+LVEKITKT AW NPLQRARPDVYLG
Sbjct: 1071 DVEPSTTPWDPAKAYLFVPVTDNTSMEPIKGINWELVEKITKTTAWDNPLQRARPDVYLG 1130
Query: 1156 TNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAIAQFDVVKASGLVPDREAMQIH- 1214
TNERTLGGDRREYGFGKLRH + FGQKSHPTYGIRGA+A FDVV+ASGL+P R+A +
Sbjct: 1131 TNERTLGGDRREYGFGKLRHNIVFGQKSHPTYGIRGAVASFDVVRASGLLPVRDAFEKEV 1190
Query: 1215 NADMPTGKLMMADSCANAGDLEGRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGPL 1274
D+ GKLMMAD C A DL G+IVTAAHSGKRFYV+SI Y+M+AE+SFPRKEGYLGPL
Sbjct: 1191 EEDLSKGKLMMADGCMVAEDLIGKIVTAAHSGKRFYVDSICYDMSAETSFPRKEGYLGPL 1250
Query: 1275 EYSSYADYYKQKYGVELIFKKQPLIRGRGVSYCKNLLSPRFEHSEEQEGEGEEILDKTYY 1334
EY++YADYYKQKYGV+L K+QPLI+GRGVSYCKNLLSPRF EQ GE E +LDKTYY
Sbjct: 1251 EYNTYADYYKQKYGVDLNCKQQPLIKGRGVSYCKNLLSPRF----EQSGESETVLDKTYY 1306
Query: 1335 VFLPPELCFIHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKDKINYPVPASKILEALTAA 1394
VFLPPELC +HPL GSL+RGAQRLPSIMRRVESMLLA+QLK+ I+YP+P SKILEALTAA
Sbjct: 1307 VFLPPELCVVHPLSGSLIRGAQRLPSIMRRVESMLLAVQLKNLISYPIPTSKILEALTAA 1366
Query: 1395 SCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKG 1454
SCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSN+VLYQ+AL KG
Sbjct: 1367 SCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKG 1426
Query: 1455 LQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDD 1514
LQSYIQADRFAPSRW+APGV PVFDEDTKDG SS FD+E+ K +++N + +ED +
Sbjct: 1427 LQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDEEQ-----KPVSEENSDVFEDGE 1481
Query: 1515 MEDGELEGDSSSYRVLSSKTLADVVEALIGVYYVEGGKDAANHLMKWIGIQVESDPEEVG 1574
MEDGELEGD SSYRVLSSKTLADVVEALIGVYYVEGGK AANHLMKWIGI VE DP+EV
Sbjct: 1482 MEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVEGGKIAANHLMKWIGIHVEDDPDEVD 1541
Query: 1575 CPSRPACVPESVLRSVDFHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGD 1634
+ VPESVL+S+DF LE ALK +FK++GLLVEAITHASRPSSGVSCYQRLEFVGD
Sbjct: 1542 GTLKNVNVPESVLKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGD 1601
Query: 1635 AVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQI 1694
AVLDHLIT+HLFF+YT+LPPGRLTDLRAAAVNNENFARVAVKHKLH++LRHGSSAL++QI
Sbjct: 1602 AVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQI 1661
Query: 1695 RDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLL 1754
R+FVKEV E KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSG+DT+ W+VFQPLL
Sbjct: 1662 REFVKEVQTESSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLL 1721
Query: 1755 DPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNLATVEVYIDGVQVGVAQNPQKKM 1814
PMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGN ATVEV+IDGVQVGVAQNPQKKM
Sbjct: 1722 QPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKM 1781
Query: 1815 AQKLAARNALAVLKEKETAEAKEKGDENGK-----------KRKNGTQTFTRQTLNDICL 1863
AQKLAARNALA LKEKE AE+KEK NG +KNG Q FTRQTLNDICL
Sbjct: 1782 AQKLAARNALAALKEKEIAESKEKHINNGNAGEDQGENENGNKKNGHQPFTRQTLNDICL 1841
Query: 1864 RRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLL 1923
R+NWPMP YRCV+EGGPAHAKRFT+ VRVNT+D+GWTDEC+GEPMPSVKKAKDSAAVLLL
Sbjct: 1842 RKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLL 1901
Query: 1924 ELLNKWYS 1931
ELLNK +S
Sbjct: 1902 ELLNKTFS 1909
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334182203|ref|NP_001184881.1| endoribonuclease Dicer [Arabidopsis thaliana] gi|332189100|gb|AEE27221.1| endoribonuclease Dicer [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2898 bits (7512), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1461/1989 (73%), Positives = 1643/1989 (82%), Gaps = 139/1989 (6%)
Query: 1 MEGETRVSDIVGGGESNQSSYWLDACEDI---LIDEFVN-FDTSVVQDSVDNTSNQDSLS 56
ME E R + I + SYWLDACEDI LID+ V+ FD S V +V+ +++++ +
Sbjct: 3 MEDEPREATI-------KPSYWLDACEDISCDLIDDLVSEFDPSSV--AVNESTDENGVI 53
Query: 57 NDFFGGIDHILDSIKNGSGLPNSNGNLLKNGSEDSTGGENHQAEGLILLSNNGSDKDGVD 116
NDFFGGIDHILDSIKNG GLPN NG D+
Sbjct: 54 NDFFGGIDHILDSIKNGGGLPN-------NGVSDTNS----------------------- 83
Query: 117 RKRKLENCENVNGYLVNGKAGGRLSDHFTKENGVHRDNGNNDHEASRIRDFDSE--DRFS 174
+N V + ++ KENG+ ++ G D +F E D+
Sbjct: 84 ---------QINEVTVTPQV---IAKETVKENGLQKNGGKRD-------EFSKEEGDKDR 124
Query: 175 KRARVSVCKNE-SQYSSRGQYCSS-DKDRVFGRKRLRDLDDIGRRDRDPMRRREHYNGSS 232
KRARV ++E S S RG +S + DR RKR R+ D+ G ++RE N
Sbjct: 125 KRARVCSYQSERSNLSGRGHVNNSREGDRFMNRKRTRNWDEAGNNK----KKRECNN--- 177
Query: 233 RKDVRDKDFRDREPRGYWERDRLGSNGMVFRLGSWEADHNRAGKEANGINQECNGKV--- 289
+D RDRE RGYWERD++GSN +V+R G+WEADH R K+ +G N+EC+ K
Sbjct: 178 ----YRRDGRDREVRGYWERDKVGSNELVYRSGTWEADHERDVKKVSGGNRECDVKAEEN 233
Query: 290 -GKKSEAKEKMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQ 348
K E KEK+ EEQAR YQLDVLEQAK KNTIAFLETGAGKTLIA+LLI+S+ DL Q
Sbjct: 234 KSKPEERKEKVVEEQARRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQ 293
Query: 349 NKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVM 408
N+KML+VFLVPKVPLVYQQAEVIR QT + VGHYCGEMGQDFWD++RWQREF++KQVLVM
Sbjct: 294 NRKMLSVFLVPKVPLVYQQAEVIRNQTCFQVGHYCGEMGQDFWDSRRWQREFESKQVLVM 353
Query: 409 TAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTA 468
TAQILLNILRHSII+ME I+LLILDECHHAVKKHPYSLVMSEFYHTT K+KRP++FGMTA
Sbjct: 354 TAQILLNILRHSIIRMETIDLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPAIFGMTA 413
Query: 469 SPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWS 528
SPVNLKGVSSQVDCAIKI NLE+KLDS VCTIKDRKELEKHVPMPSE+VVEYDKAA++WS
Sbjct: 414 SPVNLKGVSSQVDCAIKIRNLETKLDSTVCTIKDRKELEKHVPMPSEIVVEYDKAATMWS 473
Query: 529 LHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQK 588
LHE +KQM AVEEAAQ+SSR+SKWQFMGARDAGAK+ELRQVYGVSERTESDGAANLI K
Sbjct: 474 LHETIKQMIAAVEEAAQASSRKSKWQFMGARDAGAKDELRQVYGVSERTESDGAANLIHK 533
Query: 589 LRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEG 648
LRAINY L ELGQWCAYKV QSFL+ALQ+DER N+Q+DVKFQESYLS+VVSLLQCEL+EG
Sbjct: 534 LRAINYTLAELGQWCAYKVGQSFLSALQSDERVNFQVDVKFQESYLSEVVSLLQCELLEG 593
Query: 649 AVSKKDAKVV-DSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQ 707
A ++K A V ENG +E+EEGEL D VVSGGEHVD +IGAAVADGKVTPKVQ
Sbjct: 594 AAAEKVAAEVGKPENG---NAHDEMEEGELPDDPVVSGGEHVDEVIGAAVADGKVTPKVQ 650
Query: 708 SLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTF 767
SLIK+LLKYQHT DFRAI+FVERVVAALVLPKVFAELPSLSF++ AS+IGHNNSQEM++
Sbjct: 651 SLIKLLLKYQHTADFRAIVFVERVVAALVLPKVFAELPSLSFIRCASMIGHNNSQEMKSS 710
Query: 768 QMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827
QMQ+TI+KFRDG VTLLVATSVAEEGLDIRQCNVV+RFDLAKTVLAYIQSRGRARKPGSD
Sbjct: 711 QMQDTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARKPGSD 770
Query: 828 YILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAVPGTVYQVES 887
YILM+ERGN+SHA FLRNARNSEETLRKEAIERTDLSHLKDTSRLIS+DAVPGTVY+VE+
Sbjct: 771 YILMVERGNVSHAAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISIDAVPGTVYKVEA 830
Query: 888 TGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFE 947
TGA+VSLNSAVGL+HFYCSQLP DRY+ILRPEF ME+HEKPGG TEYSC+LQLPCNAPFE
Sbjct: 831 TGAMVSLNSAVGLVHFYCSQLPGDRYAILRPEFSMEKHEKPGGHTEYSCRLQLPCNAPFE 890
Query: 948 KLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEQQEKVDQNDEGEPLPGT 1007
LEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSG+ EK DQ+DEGEP+PGT
Sbjct: 891 ILEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGQDAEKADQDDEGEPVPGT 950
Query: 1008 ARHREFYPEGVADILQGEWILSGRDGCTGSKLFHLFMYTVKCVNNGISKDPFLTQVSDFA 1067
ARHREFYPEGVAD+L+GEW+ SG++ C SKLFHL+MY V+CV+ G SKDPFL++VS+FA
Sbjct: 951 ARHREFYPEGVADVLKGEWVSSGKEVCESSKLFHLYMYNVRCVDFGSSKDPFLSEVSEFA 1010
Query: 1068 VLFSSELDAE---------------------------------LASLKNFHVRLMSIVLD 1094
+LF +ELDAE L+SLK FHVRLMSIVLD
Sbjct: 1011 ILFGNELDAEVVLSMSMDLYVARAMITKASLAFKGSLDITENQLSSLKKFHVRLMSIVLD 1070
Query: 1095 VDVEPYTTPWDPAKAYLFVPVVSDKSVDPMNELDWDLVEKITKTDAWTNPLQRARPDVYL 1154
VDVEP TTPWDPAKAYLFVPV + S++P+ ++W+LVEKITKT AW NPLQRARPDVYL
Sbjct: 1071 VDVEPSTTPWDPAKAYLFVPVTDNTSMEPIKGINWELVEKITKTTAWDNPLQRARPDVYL 1130
Query: 1155 GTNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAIAQFDVVKASGLVPDREAMQIH 1214
GTNERTLGGDRREYGFGKLRH + FGQKSHPTYGIRGA+A FDVV+ASGL+P R+A +
Sbjct: 1131 GTNERTLGGDRREYGFGKLRHNIVFGQKSHPTYGIRGAVASFDVVRASGLLPVRDAFEKE 1190
Query: 1215 -NADMPTGKLMMADSCANAGDLEGRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGP 1273
D+ GKLMMAD C A DL G+IVTAAHSGKRFYV+SI Y+M+AE+SFPRKEGYLGP
Sbjct: 1191 VEEDLSKGKLMMADGCMVAEDLIGKIVTAAHSGKRFYVDSICYDMSAETSFPRKEGYLGP 1250
Query: 1274 LEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYCKNLLSPRFEHSEEQEGEGEEILDKTY 1333
LEY++YADYYKQKYGV+L K+QPLI+GRGVSYCKNLLSPRF EQ GE E +LDKTY
Sbjct: 1251 LEYNTYADYYKQKYGVDLNCKQQPLIKGRGVSYCKNLLSPRF----EQSGESETVLDKTY 1306
Query: 1334 YVFLPPELCFIHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKDKINYPVPASKILEALTA 1393
YVFLPPELC +HPL GSL+RGAQRLPSIMRRVESMLLA+QLK+ I+YP+P SKILEALTA
Sbjct: 1307 YVFLPPELCVVHPLSGSLIRGAQRLPSIMRRVESMLLAVQLKNLISYPIPTSKILEALTA 1366
Query: 1394 ASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSK 1453
ASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSN+VLYQ+AL K
Sbjct: 1367 ASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVK 1426
Query: 1454 GLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDD 1513
GLQSYIQADRFAPSRW+APGV PVFDEDTKDG SS FD+E+ K +++N + +ED
Sbjct: 1427 GLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDEEQ-----KPVSEENSDVFEDG 1481
Query: 1514 DMEDGELEGDSSSYRVLSSKTLADVVEALIGVYYVEGGKDAANHLMKWIGIQVESDPEEV 1573
+MEDGELEGD SSYRVLSSKTLADVVEALIGVYYVEGGK AANHLMKWIGI VE DP+EV
Sbjct: 1482 EMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVEGGKIAANHLMKWIGIHVEDDPDEV 1541
Query: 1574 GCPSRPACVPESVLRSVDFHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVG 1633
+ VPESVL+S+DF LE ALK +FK++GLLVEAITHASRPSSGVSCYQRLEFVG
Sbjct: 1542 DGTLKNVNVPESVLKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVG 1601
Query: 1634 DAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQ 1693
DAVLDHLIT+HLFF+YT+LPPGRLTDLRAAAVNNENFARVAVKHKLH++LRHGSSAL++Q
Sbjct: 1602 DAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQ 1661
Query: 1694 IRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPL 1753
IR+FVKEV E KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSG+DT+ W+VFQPL
Sbjct: 1662 IREFVKEVQTESSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPL 1721
Query: 1754 LDPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNLATVEVYIDGVQVGVAQNPQKK 1813
L PMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGN ATVEV+IDGVQVGVAQNPQKK
Sbjct: 1722 LQPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKK 1781
Query: 1814 MAQKLAARNALAVLKEKETAEAKEKGDENGK-----------KRKNGTQTFTRQTLNDIC 1862
MAQKLAARNALA LKEKE AE+KEK NG +KNG Q FTRQTLNDIC
Sbjct: 1782 MAQKLAARNALAALKEKEIAESKEKHINNGNAGEDQGENENGNKKNGHQPFTRQTLNDIC 1841
Query: 1863 LRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLL 1922
LR+NWPMP YRCV+EGGPAHAKRFT+ VRVNT+D+GWTDEC+GEPMPSVKKAKDSAAVLL
Sbjct: 1842 LRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLL 1901
Query: 1923 LELLNKWYS 1931
LELLNK +S
Sbjct: 1902 LELLNKTFS 1910
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6102610|gb|AAF03534.1|AF187317_1 CAF protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2894 bits (7502), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1459/1988 (73%), Positives = 1642/1988 (82%), Gaps = 138/1988 (6%)
Query: 1 MEGETRVSDIVGGGESNQSSYWLDACEDI---LIDEFVN-FDTSVVQDSVDNTSNQDSLS 56
ME E R + I + SYWLDACEDI LID+ V+ FD S V +V+ +++++ +
Sbjct: 3 MEDEPREATI-------KPSYWLDACEDISCDLIDDLVSEFDPSSV--AVNESTDENGVI 53
Query: 57 NDFFGGIDHILDSIKNGSGLPNSNGNLLKNGSEDSTGGENHQAEGLILLSNNGSDKDGVD 116
NDFFGGIDHILDSIKNG GLPN NG D+
Sbjct: 54 NDFFGGIDHILDSIKNGGGLPN-------NGVSDTNS----------------------- 83
Query: 117 RKRKLENCENVNGYLVNGKAGGRLSDHFTKENGVHRDNGNNDHEASRIRDFDSE--DRFS 174
+N V + ++ KENG+ ++ G D +F E D+
Sbjct: 84 ---------QINEVTVTPQV---IAKETVKENGLQKNGGKRD-------EFSKEEGDKDR 124
Query: 175 KRARVSVCKNE-SQYSSRGQYCS-SDKDRVFGRKRLRDLDDIGRRDRDPMRRREHYNGSS 232
KRARV ++E S S RG + + DR RKR R+ D+ G ++RE N
Sbjct: 125 KRARVCSYQSERSNLSGRGHVNNFREGDRFMNRKRTRNWDEAGNNK----KKRECNN--- 177
Query: 233 RKDVRDKDFRDREPRGYWERDRLGSNGMVFRLGSWEADHNRAGKEANGINQECNGKV--- 289
+D RDRE RGYWERD++GSN +V+R G+WEADH R K+ +G N+EC+ K
Sbjct: 178 ----YRRDGRDREVRGYWERDKVGSNELVYRSGTWEADHERDVKKVSGGNRECDVKAEEN 233
Query: 290 -GKKSEAKEKMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQ 348
K E KEK+ EEQAR YQLDVLEQAK KNTIAFLETGAGKTLIA+LLI+S+ DL Q
Sbjct: 234 KSKPEERKEKVVEEQARRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQ 293
Query: 349 NKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVM 408
N+KML+VFLVPKVPLVYQQAEVIR QT + VGHYCGEMGQDFWD++RWQREF++KQVLVM
Sbjct: 294 NRKMLSVFLVPKVPLVYQQAEVIRNQTCFQVGHYCGEMGQDFWDSRRWQREFESKQVLVM 353
Query: 409 TAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTA 468
TAQILLNILRHSII+ME I+LLILDECHHAVKKHPYSLVMSEFYHTT K+KRP++FGMTA
Sbjct: 354 TAQILLNILRHSIIRMETIDLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPAIFGMTA 413
Query: 469 SPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWS 528
SPVNLKGVSSQVDCAIKI NLE+KLDS VCTIKDRKELEKHVPMPSE+VVEYDKAA++WS
Sbjct: 414 SPVNLKGVSSQVDCAIKIRNLETKLDSTVCTIKDRKELEKHVPMPSEIVVEYDKAATMWS 473
Query: 529 LHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQK 588
LHE +KQM AVEEAAQ+SSR+SKWQFMGARDAGAK+ELRQVYGVSERTESDGAANLI K
Sbjct: 474 LHETIKQMIAAVEEAAQASSRKSKWQFMGARDAGAKDELRQVYGVSERTESDGAANLIHK 533
Query: 589 LRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEG 648
LRAINY L ELGQWCAYKV QSFL+ALQ+DER N+Q+DVKFQESYLS+VVSLLQCEL+EG
Sbjct: 534 LRAINYTLAELGQWCAYKVGQSFLSALQSDERVNFQVDVKFQESYLSEVVSLLQCELLEG 593
Query: 649 AVSKKDAKVV-DSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQ 707
A ++K A V ENG +E+EEGEL D VVSGGEHVD +IGAAVADGKVTPKVQ
Sbjct: 594 AAAEKVAAEVGKPENG---NAHDEMEEGELPDDPVVSGGEHVDEVIGAAVADGKVTPKVQ 650
Query: 708 SLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTF 767
SLIK+LLKYQHT DFRAI+FVERVVAALVLPKVFAELPSLSF++ AS+IGHNNSQEM++
Sbjct: 651 SLIKLLLKYQHTADFRAIVFVERVVAALVLPKVFAELPSLSFIRCASMIGHNNSQEMKSS 710
Query: 768 QMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827
QMQ+TI+KFRDG VTLLVATSVAEEGLDIRQCNVV+RFDLAKTVLAYIQSRGRARKPGSD
Sbjct: 711 QMQDTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARKPGSD 770
Query: 828 YILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAVPGTVYQVES 887
YILM+ERGN+SHA FLRNARNSEETLRKEAIERTDLSHLKDTSRLIS+DAVPGTVY+VE+
Sbjct: 771 YILMVERGNVSHAAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISIDAVPGTVYKVEA 830
Query: 888 TGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFE 947
TGA+VSLNSAVGL+HFYCSQLP DRY+ILRPEF ME+HEKPGG TEYSC+LQLPCNAPFE
Sbjct: 831 TGAMVSLNSAVGLVHFYCSQLPGDRYAILRPEFSMEKHEKPGGHTEYSCRLQLPCNAPFE 890
Query: 948 KLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEQQEKVDQNDEGEPLPGT 1007
LEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSG+ EK DQ+DEGEP+PGT
Sbjct: 891 ILEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGQDAEKADQDDEGEPVPGT 950
Query: 1008 ARHREFYPEGVADILQGEWILSGRDGCTGSKLFHLFMYTVKCVNNGISKDPFLTQVSDFA 1067
ARHREFYPEGVAD+L+GEW+ SG++ C SKLFHL+M+ V+CV+ G SKDPFL++VS+FA
Sbjct: 951 ARHREFYPEGVADVLKGEWVSSGKEVCESSKLFHLYMHNVRCVDFGSSKDPFLSEVSEFA 1010
Query: 1068 VLFSSELDAE--------------------------------LASLKNFHVRLMSIVLDV 1095
+LF +ELDAE L+SLK FHVRLMSIVLDV
Sbjct: 1011 ILFGNELDAEVLSMSMDLYVARAMITKASLAFKGSLDITENQLSSLKKFHVRLMSIVLDV 1070
Query: 1096 DVEPYTTPWDPAKAYLFVPVVSDKSVDPMNELDWDLVEKITKTDAWTNPLQRARPDVYLG 1155
DVEP TTPWDPAKAYLFVPV + S++P+ ++W+LVEKITKT AW NPLQRARPDVYLG
Sbjct: 1071 DVEPSTTPWDPAKAYLFVPVTDNTSMEPIKGINWELVEKITKTTAWDNPLQRARPDVYLG 1130
Query: 1156 TNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAIAQFDVVKASGLVPDREAMQIH- 1214
TNERTLGGDRREYGFGKLRH + FGQKSHPTYGIRGA+A FDVV+ASGL+P R+A +
Sbjct: 1131 TNERTLGGDRREYGFGKLRHNIVFGQKSHPTYGIRGAVASFDVVRASGLLPVRDAFEKEV 1190
Query: 1215 NADMPTGKLMMADSCANAGDLEGRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGPL 1274
D+ GKLMMAD C A DL G+IVTAAHSGKRFYV+SI Y+M+AE+SFPRKEGYLGPL
Sbjct: 1191 EEDLSKGKLMMADGCMVAEDLIGKIVTAAHSGKRFYVDSICYDMSAETSFPRKEGYLGPL 1250
Query: 1275 EYSSYADYYKQKYGVELIFKKQPLIRGRGVSYCKNLLSPRFEHSEEQEGEGEEILDKTYY 1334
EY++YADYYKQKYGV+L K+QPLI+GRGVSYCKNLLSPRF EQ GE E +LDKTYY
Sbjct: 1251 EYNTYADYYKQKYGVDLNCKQQPLIKGRGVSYCKNLLSPRF----EQSGESETVLDKTYY 1306
Query: 1335 VFLPPELCFIHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKDKINYPVPASKILEALTAA 1394
VFLPPELC +HPL GSL+RGAQRLPSIMRRVESMLLA+QLK+ I+YP+P SKILEALTAA
Sbjct: 1307 VFLPPELCVVHPLSGSLIRGAQRLPSIMRRVESMLLAVQLKNLISYPIPTSKILEALTAA 1366
Query: 1395 SCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKG 1454
SCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSN+VLYQ+AL KG
Sbjct: 1367 SCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKG 1426
Query: 1455 LQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDD 1514
LQSYIQADRFAPSRW+APGV PVFDEDTKDG SS FD+E+ K +++N + +ED +
Sbjct: 1427 LQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDEEQ-----KPVSEENSDVFEDGE 1481
Query: 1515 MEDGELEGDSSSYRVLSSKTLADVVEALIGVYYVEGGKDAANHLMKWIGIQVESDPEEVG 1574
MEDGELEGD SSYRVLSSKTLADVVEALIGVYYVEGGK AANHLMKWIGI VE DP+EV
Sbjct: 1482 MEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVEGGKIAANHLMKWIGIHVEDDPDEVD 1541
Query: 1575 CPSRPACVPESVLRSVDFHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGD 1634
+ VPESVL+S+DF LE ALK +FK++GLLVEAITHASRPSSGVSCYQRLEFVGD
Sbjct: 1542 GTLKNVNVPESVLKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGD 1601
Query: 1635 AVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQI 1694
AVLDHLIT+HLFF+YT+LPPGRLTDLRAAAVNNENFARVAVKHKLH++LRHGSSAL++QI
Sbjct: 1602 AVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQI 1661
Query: 1695 RDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLL 1754
R+FVKEV E KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSG+DT+ W+VFQPLL
Sbjct: 1662 REFVKEVQTESSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLL 1721
Query: 1755 DPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNLATVEVYIDGVQVGVAQNPQKKM 1814
PMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGN ATVEV+IDGVQVGVAQNPQKKM
Sbjct: 1722 QPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKM 1781
Query: 1815 AQKLAARNALAVLKEKETAEAKEKGDENGK-----------KRKNGTQTFTRQTLNDICL 1863
AQKLAARNALA LKEKE AE+KEK NG +KNG Q FTRQTLNDICL
Sbjct: 1782 AQKLAARNALAALKEKEIAESKEKHINNGNAGEDQGENENGNKKNGHQPFTRQTLNDICL 1841
Query: 1864 RRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLL 1923
R+NWPMP YRCV+EGGPAHAKRFT+ VRVNT+D+GWTDEC+GEPMPSVKKAKDSAAVLLL
Sbjct: 1842 RKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLL 1901
Query: 1924 ELLNKWYS 1931
ELLNK +S
Sbjct: 1902 ELLNKTFS 1909
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|87240866|gb|ABD32724.1| Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Ribonuclease III, bacterial [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 2836 bits (7352), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1416/1790 (79%), Positives = 1538/1790 (85%), Gaps = 118/1790 (6%)
Query: 244 REPRGYWERDRLGSNGMVFRLGSWEADHNRAGKEA---NGINQECNGKVGKKSEAKEKMP 300
R+ +GYWERD+ SN +VFR G+WE + + + + N I QE K + +P
Sbjct: 165 RDVKGYWERDK-SSNDLVFRSGTWEPNLHTSQHKMDIDNPIKQE-------KPKETVPVP 216
Query: 301 EEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK 360
EE+AR YQLDVLEQAK +NTIAFLETGAGKTLIAVLLI+SI L QNKKMLAVFLVPK
Sbjct: 217 EEKARQYQLDVLEQAKTRNTIAFLETGAGKTLIAVLLIKSIHETLHLQNKKMLAVFLVPK 276
Query: 361 VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS 420
VPLVYQQAEVIRE+TGY VGHYCGEMGQDFWDA+RWQREFDTK VLVMTAQILLNILRHS
Sbjct: 277 VPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQILLNILRHS 336
Query: 421 IIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQV 480
IIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTT KEKRPSVFGMTASPVNLKGVSSQV
Sbjct: 337 IIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVSSQV 396
Query: 481 DCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEVAV 540
DCAIKI NLESKLDS+VCTIKDRKELEKHVPMPSE+VV+YDKAASL LHEQ+KQME V
Sbjct: 397 DCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPSEIVVKYDKAASLCYLHEQIKQMETEV 456
Query: 541 EEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELG 600
EEAA+SSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRA+NYALGELG
Sbjct: 457 EEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAVNYALGELG 516
Query: 601 QWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDS 660
QWCAYKVAQSFL ALQNDERANYQLDVKFQESYLSKVVSLL+C+L EGA+S K+ V DS
Sbjct: 517 QWCAYKVAQSFLAALQNDERANYQLDVKFQESYLSKVVSLLKCQLSEGAISDKNDGVDDS 576
Query: 661 ENGFVEGGTNEIEEGE---LLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQ 717
+NG G++E EE E L DSHVVSGGEHVDVIIGAAVADGKVTPKVQ+LIKILLKYQ
Sbjct: 577 QNGAAHSGSDEHEEIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQ 636
Query: 718 HTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFR 777
+T+DFRAIIFVERVV+ALVLPKVFAELPSLSFVK ASLIGHNNSQEMRT QM +TIAKFR
Sbjct: 637 NTDDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTHQMHDTIAKFR 696
Query: 778 DGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIERGNL 837
DGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILM+ERGNL
Sbjct: 697 DGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNL 756
Query: 838 SHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAVPGTVYQVESTGAVVSLNSA 897
SH FL+NARNSEETLR+EAIERTDLSHLKD+SRLISVD P T+YQV+STGAVVSLNSA
Sbjct: 757 SHEAFLKNARNSEETLRREAIERTDLSHLKDSSRLISVDTHPETMYQVKSTGAVVSLNSA 816
Query: 898 VGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFEKLEGPVCSSM 957
VGL+HFYCSQLPSDRYSILRPEFIME+HE GGPTEYSC+LQLPCNAPFE LEGP+CSS+
Sbjct: 817 VGLVHFYCSQLPSDRYSILRPEFIMEKHENSGGPTEYSCRLQLPCNAPFENLEGPICSSI 876
Query: 958 RLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEQQEKVDQNDEGEPLPGTARHREFYPEG 1017
RLAQQA +AC+KLHEMGAFTDMLLPDKGSGE++EK +QNDEG+ LPGTARHREFYPEG
Sbjct: 877 RLAQQA---SACRKLHEMGAFTDMLLPDKGSGEEKEKAEQNDEGDALPGTARHREFYPEG 933
Query: 1018 VADILQGEWILSGRDGCTGSKLFHLFMYTVKCVNNGISKDPFLTQVSDFAVLFSSELDAE 1077
VADIL+GEWILSG+D C SKL HL+MYT+KC N G SKDPFLTQVSDFAVLF +ELDAE
Sbjct: 934 VADILKGEWILSGKDACNNSKLLHLYMYTIKCENVGHSKDPFLTQVSDFAVLFGTELDAE 993
Query: 1078 --------------------------------LASLKNFHVRLMSIVLDVDVEPYTTPWD 1105
L SLK+FHVRLMSIVLDVDVEP TTPWD
Sbjct: 994 VLSMSMDLFIARTVTTKASLVFRESIDITESQLTSLKSFHVRLMSIVLDVDVEPSTTPWD 1053
Query: 1106 PAKAYLFVPVVSDKSVDPMNELDWDLVEKITKTDAWTNPLQRARPDVYLGTNERTLGGDR 1165
PAKAYLFVP+V DKS DPMN++DW LVE I DAW NPLQ+ARPDVYLGTNERTLGGDR
Sbjct: 1054 PAKAYLFVPMVGDKSSDPMNQIDWHLVETIIGADAWKNPLQKARPDVYLGTNERTLGGDR 1113
Query: 1166 REYGFGKLRHGMAFGQKSHPTYGIRGAIAQFDVVKASGLVPDREAMQIHN-ADMPT-GKL 1223
REYGFGKLRHG+AFGQKSHPTYGIRGA+AQFDVVKASGLVP+R++M+ N +M T GKL
Sbjct: 1114 REYGFGKLRHGLAFGQKSHPTYGIRGAVAQFDVVKASGLVPNRDSMETQNHINMTTKGKL 1173
Query: 1224 MMADSCANAGDLEGRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGPL--------- 1274
MMAD+C + DL GRIVTAAHSGKRFYV+SIRYEMTAE+SFPRKEGYLGPL
Sbjct: 1174 MMADTCTSPDDLVGRIVTAAHSGKRFYVDSIRYEMTAENSFPRKEGYLGPLEYSSYADYY 1233
Query: 1275 --------------------------------EYSSYADYYKQ---------------KY 1287
+Y S+ Q +Y
Sbjct: 1234 KQKYDEASVVTCNSEGYRECPMESDNSMLILPDYRSFLSLPAQLRVHMATGSLLLLLIRY 1293
Query: 1288 GVELIFKKQPLIRGRGVSYCKNLLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHPL 1347
GV+L +K+QPLIRGRGVSYCKNLLSPRFEHSE E E EE DKTYYVFLPPELC +HPL
Sbjct: 1294 GVDLAYKQQPLIRGRGVSYCKNLLSPRFEHSEGHEDETEETHDKTYYVFLPPELCLVHPL 1353
Query: 1348 PGSLVRGAQRLPSIMRRVESMLLAIQLKDKINYPVPASK------ILEALTAASCQETFC 1401
PGSLVRGAQRLPSIMRRVESMLLA+QLK+ INYPV ASK ILEALTAASCQETFC
Sbjct: 1354 PGSLVRGAQRLPSIMRRVESMLLAVQLKNMINYPVQASKVSSQLKILEALTAASCQETFC 1413
Query: 1402 YERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQA 1461
YERAELLGDAYLKWVVSRFLFLK+PQKHEGQLTRMRQQMVSN+VLY+YALSKGLQSYI A
Sbjct: 1414 YERAELLGDAYLKWVVSRFLFLKHPQKHEGQLTRMRQQMVSNMVLYRYALSKGLQSYILA 1473
Query: 1462 DRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELE 1521
DRFAPSRWAAPGVLPVFDEDTKD +SSLFDQE+S+ K N +E+ED+ MEDGELE
Sbjct: 1474 DRFAPSRWAAPGVLPVFDEDTKDEESSLFDQERSIF--KAERMDNTDEFEDE-MEDGELE 1530
Query: 1522 GDSSSYRVLSSKTLADVVEALIGVYYVEGGKDAANHLMKWIGIQVESDPEEVGCPSRPAC 1581
DSSSYRVLSSKTLADVVEALIGVYYVEGGK+AANHLMKWIGI +E DP+E+ C ++P+
Sbjct: 1531 SDSSSYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIGIHIEIDPDEMECITKPSN 1590
Query: 1582 VPESVLRSVDFHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLI 1641
VP+S+LRSVDF ALE AL IKFKD+GLL+E+ITHASRPSSGVSCYQRLEFVGDAVLDHLI
Sbjct: 1591 VPDSILRSVDFDALEGALNIKFKDKGLLIESITHASRPSSGVSCYQRLEFVGDAVLDHLI 1650
Query: 1642 TKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEV 1701
T+HLFFSYT+LPPGRLTDLRAAAVNNENFARV VKH LH+HLRHGSSAL++QI+DFVKEV
Sbjct: 1651 TRHLFFSYTDLPPGRLTDLRAAAVNNENFARVTVKHNLHLHLRHGSSALEKQIKDFVKEV 1710
Query: 1702 LEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMVTPE 1761
+EL KPGFNSFGLGDCKAPKVLGDI+ESIAGAIFLDSGR+T+VVW+VFQPLL PMVTPE
Sbjct: 1711 QDELSKPGFNSFGLGDCKAPKVLGDILESIAGAIFLDSGRNTAVVWKVFQPLLHPMVTPE 1770
Query: 1762 TLPMHPVRELQERCQQQAEGLEYKASRSGNLATVEVYIDGVQVGVAQNPQKKMAQKLAAR 1821
TLPMHPVRELQERCQQQAEGLEY+ASR+GNLATVEV+IDGVQVG AQNPQKKMAQKLAAR
Sbjct: 1771 TLPMHPVRELQERCQQQAEGLEYRASRAGNLATVEVFIDGVQVGAAQNPQKKMAQKLAAR 1830
Query: 1822 NALAVLKEKETAEAKEKGDENGKKRKNGTQTFTRQTLNDICLRRNWPMPLYRCVREGGPA 1881
NALA LKEKE ++ +EK DE K+ KNG QTFTRQTLNDICLRRNWPMP YRCV EGGPA
Sbjct: 1831 NALAALKEKEESKIQEKNDE--KETKNGNQTFTRQTLNDICLRRNWPMPFYRCVSEGGPA 1888
Query: 1882 HAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKWYS 1931
HAKRFT+AVRVNTTDKGWTDECVGE MPSVKKAKDSAAVLLLEL+NK YS
Sbjct: 1889 HAKRFTFAVRVNTTDKGWTDECVGEAMPSVKKAKDSAAVLLLELINKLYS 1938
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1931 | ||||||
| UNIPROTKB|Q8LMR2 | 1883 | DCL1 "Endoribonuclease Dicer h | 0.445 | 0.456 | 0.767 | 0.0 | |
| TAIR|locus:2097705 | 1388 | DCL2 "dicer-like 2" [Arabidops | 0.147 | 0.205 | 0.449 | 3.7e-169 | |
| UNIPROTKB|A7LFZ6 | 1657 | DCL4 "Endoribonuclease Dicer h | 0.157 | 0.184 | 0.362 | 2.4e-162 | |
| TAIR|locus:2149259 | 1702 | DCL4 "dicer-like 4" [Arabidops | 0.267 | 0.303 | 0.359 | 1.3e-152 | |
| ZFIN|ZDB-GENE-030131-3445 | 1865 | dicer1 "Dicer1, Dcr-1 homolog | 0.151 | 0.157 | 0.341 | 7.2e-129 | |
| UNIPROTKB|Q9UPY3 | 1922 | DICER1 "Endoribonuclease Dicer | 0.355 | 0.356 | 0.306 | 3.4e-124 | |
| UNIPROTKB|Q25BN1 | 1921 | DICER1 "Endoribonuclease Dicer | 0.354 | 0.356 | 0.303 | 9.9e-124 | |
| UNIPROTKB|E2RIN4 | 1923 | DICER1 "Uncharacterized protei | 0.354 | 0.356 | 0.307 | 2e-123 | |
| UNIPROTKB|F1NJX0 | 1921 | DICER1 "Endoribonuclease Dicer | 0.354 | 0.356 | 0.303 | 2e-123 | |
| UNIPROTKB|A0MQH0 | 1917 | DICER1 "Endoribonuclease Dicer | 0.353 | 0.356 | 0.302 | 2.1e-123 |
| UNIPROTKB|Q8LMR2 DCL1 "Endoribonuclease Dicer homolog 1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 3475 (1228.3 bits), Expect = 0., Sum P(4) = 0.
Identities = 669/872 (76%), Positives = 745/872 (85%)
Query: 1061 TQVSDFAVLFSSELD---AELASLKNFHVRLMSIVLDVDVEPYTTPWDPAKAYLFVPVVS 1117
T ++ +++F ++ ++L LK+FHVRLMSIVLDVDV+P TTPWDPAKAYLFVPV +
Sbjct: 1009 TMITKASLVFRGRIEITESQLVLLKSFHVRLMSIVLDVDVDPSTTPWDPAKAYLFVPVGA 1068
Query: 1118 DKSVDPMNELDWDLVEKITKTDAWTNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHGM 1177
+K DP+ E+DW LV I TDAW NPLQRARPDVYLGTNERTLGGDRREYGFGKLRHG
Sbjct: 1069 EKCTDPLREIDWTLVNNIVNTDAWNNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHGT 1128
Query: 1178 AFGQKSHPTYGIRGAIAQFDVVKASGLVPDREAMQIHNADMPT-GKLMMADSCANAGDLE 1236
AFGQK+HPTYGIRGAIA+FD+VKASGLVP R+ + H +D GKL MADSC NA DL
Sbjct: 1129 AFGQKAHPTYGIRGAIAEFDIVKASGLVPARD--RGHFSDYQNQGKLFMADSCWNAKDLA 1186
Query: 1237 GRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQ 1296
G +VTAAHSGKRFYV+ I Y M AE+SFPRKEGYLGPLEYSSYADYYKQKYGVELI++KQ
Sbjct: 1187 GMVVTAAHSGKRFYVDCICYNMNAENSFPRKEGYLGPLEYSSYADYYKQKYGVELIYRKQ 1246
Query: 1297 PLIRGRGVSYCKNLLSPRFEHSXXXXXXXXXILDKTYYVFLPPELCFIHPLPGSLVRGAQ 1356
PLIR RGVSYCKNLLSPRFEHS LDKTYYV+LPPELC +HPLPGSLVRGAQ
Sbjct: 1247 PLIRARGVSYCKNLLSPRFEHSDAREGDFSENLDKTYYVYLPPELCLVHPLPGSLVRGAQ 1306
Query: 1357 RLPSIMRRVESMLLAIQLKDKINYPVPASKILEALTAASCQETFCYERAELLGDAYLKWV 1416
RLPSIMRRVESMLLA+QLKD I+YPVPA+KILEALTAASCQET CYERAELLGDAYLKWV
Sbjct: 1307 RLPSIMRRVESMLLAVQLKDIIDYPVPATKILEALTAASCQETLCYERAELLGDAYLKWV 1366
Query: 1417 VSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLP 1476
VSRFLFLKYPQKHEGQLTRMRQQMVSN+VLYQYAL+K LQSYIQADRFAPSRWAAPGVLP
Sbjct: 1367 VSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALNKTLQSYIQADRFAPSRWAAPGVLP 1426
Query: 1477 VFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNXXXXXXXXXXXXXXXSSSYRVLSSKTLA 1536
VFDE++++ + S+FD+E + E + ++Y+ SS YRVLSSKTLA
Sbjct: 1427 VFDEESREYEPSIFDEESTGCELQ---KESYDDYADNMQEDGEIEGDSSCYRVLSSKTLA 1483
Query: 1537 DVVEALIGVYYVEGGKDAANHLMKWIGIQVESDPEEVGCPSRPACVPESVLRSVDFHALE 1596
DVVEALIGVYYV GGK AANHLMKWIGI E DPEE+ P +P +PES++RS++F L+
Sbjct: 1484 DVVEALIGVYYVAGGKIAANHLMKWIGIHAELDPEEIP-PPKPYDIPESIMRSINFDTLK 1542
Query: 1597 DALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGR 1656
L I+F+++GLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLIT+HLFF+YT+LPPGR
Sbjct: 1543 GVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGR 1602
Query: 1657 LTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLG 1716
LTDLRAAAVNNENFARVAVKHKLHVHLRHGSSAL+ QIR+FVK+V EELLKPGFNSFGLG
Sbjct: 1603 LTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELLKPGFNSFGLG 1662
Query: 1717 DCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMVTPETLPMHPVRELQERCQ 1776
DCKAPKVLGDIVESIAGAIFLDSG DTSVVW+VFQPLL PMVTPETLPMHPVRELQERCQ
Sbjct: 1663 DCKAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETLPMHPVRELQERCQ 1722
Query: 1777 QQAEGLEYKASRSGNLATVEVYIDGVQVGVAQNPQKKMAQKLAARNXXXXXXXXXXXXXX 1836
QQAEGLEYKASR+GN+ATVEV++DGVQ+GVAQNPQKKMAQKLAARN
Sbjct: 1723 QQAEGLEYKASRAGNIATVEVFVDGVQIGVAQNPQKKMAQKLAARNALVVLKEKETATKK 1782
Query: 1837 XXGDENGKKRKNGTQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTD 1896
DE ++KNG Q FTRQTLNDICLRR WPMP YRCV EGGPAHAKRF Y+VRVNT+D
Sbjct: 1783 E--DERDGEKKNGAQMFTRQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVNTSD 1840
Query: 1897 KGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928
+GWTDEC+GEPMPSVKKAKDSAAVLLLELLN+
Sbjct: 1841 RGWTDECIGEPMPSVKKAKDSAAVLLLELLNR 1872
|
|
| TAIR|locus:2097705 DCL2 "dicer-like 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 567 (204.7 bits), Expect = 3.7e-169, Sum P(5) = 3.7e-169
Identities = 134/298 (44%), Positives = 185/298 (62%)
Query: 1525 SSYRVLSSKTLADVVEALIGVYYVEGGKDAANHLMKWIGIQVESDPEEVGCPSRPACVPE 1584
+S R L K++ADVVE+LIG Y EGG+ AA M W+GI+V+ ++ R + +
Sbjct: 1087 ASRRNLKRKSVADVVESLIGAYLSEGGELAALMFMNWVGIKVDFTTTKI---QRDSPIQA 1143
Query: 1585 SVLRSVDFHALEDALKIKFKDRGLLVEAITHASRPSSGVS-CYQRLEFVGDAVLDHLITK 1643
L +V + +E L F+D+ LLVEA+TH S + CYQRLEF+GD+VLD+LITK
Sbjct: 1144 EKLVNVGY--MESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITK 1201
Query: 1644 HLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLE 1703
HL+ Y L PG LTD+R+A+VNNE +A VAVK LH H+ + S L + I V E +
Sbjct: 1202 HLYDKYPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQ 1261
Query: 1704 ELLKPGFNSFGL-GDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMVTPET 1762
L+ ++FG D PKVLGD++ES+AGAIF+DSG + VV+ +PLL M+TPET
Sbjct: 1262 SSLQ---STFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPET 1318
Query: 1763 LPMHPVRELQERCQQQAEGLEYKASRSGNLATVEVYIDGVQVG-VAQNPQKKMAQKLA 1819
+ +HPVREL E CQ+ E ++ + TVEV + A+ KKMA+KLA
Sbjct: 1319 VKLHPVRELTELCQKWQ--FELSKAKDFDSFTVEVKAKEMSFAHTAKASDKKMAKKLA 1374
|
|
| UNIPROTKB|A7LFZ6 DCL4 "Endoribonuclease Dicer homolog 4" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 494 (179.0 bits), Expect = 2.4e-162, Sum P(9) = 2.4e-162
Identities = 116/320 (36%), Positives = 166/320 (51%)
Query: 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIG-HNNSQE 763
K LI +L +Y E+ + I+FV+R+ A + + L L F K L+G H+ S+
Sbjct: 401 KFSVLINVLSRYGLQENMKCIVFVKRITVARAISNILQNLKCLEFWKCEFLVGCHSGSKN 460
Query: 764 MRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARK 823
M +M + +F G V LLVATSV EEGLDI+ C +V+RFDL +TV ++IQSRGRAR
Sbjct: 461 MSRNKMDAIVQRFSSGEVNLLVATSVGEEGLDIQTCCLVVRFDLPETVASFIQSRGRARM 520
Query: 824 PGSDYILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAVPGTVY 883
S Y++++ER N SH L E + +E RT D D + +Y
Sbjct: 521 TKSKYVVLLERENQSHEKLLNGYIAGESIMNEEIDSRTS----NDM-----FDCLEENIY 571
Query: 884 QVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCN 943
QV++TGA +S +V L+H YC LP D + P F G C+L LP N
Sbjct: 572 QVDNTGASISTACSVSLLHCYCDNLPRDMFFTPSPVFFYI-----DGIEGIICRLILPPN 626
Query: 944 APFEKLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEQQEKVDQNDEGEP 1003
A F + +G C S A++ CL AC KLH++GA TD LLP GS + + V N
Sbjct: 627 AAFRQADGQPCLSKDEAKRDACLKACVKLHKLGALTDFLLPGPGSRKNKVSVTNNSSNNK 686
Query: 1004 LPGTARHREFYPEGVADILQ 1023
+ + E + + +L+
Sbjct: 687 VEDDSLREELHEMLIPAVLK 706
|
|
| TAIR|locus:2149259 DCL4 "dicer-like 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 704 (252.9 bits), Expect = 1.3e-152, Sum P(4) = 1.3e-152
Identities = 200/557 (35%), Positives = 287/557 (51%)
Query: 1278 SYADYYKQKYGVELIFKKQPLIRGRGVSYCKNLLSPRFEHSXXXXXXXXXILDKTYYVFL 1337
S+ + + YGVEL QPL+R + + + +NLL R + + LD+ Y++ +
Sbjct: 992 SHVESIYKLYGVELKHPAQPLLRVKPLCHVRNLLHNRMQTNLEPQE-----LDE-YFIEI 1045
Query: 1338 PPELCF--IHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKDKINYPVP------ASKILE 1389
PPEL I L + LPSIM R+E++L+AI+LK ++ +P ++LE
Sbjct: 1046 PPELSHLKIKGLSKDIGSSLSLLPSIMHRMENLLVAIELKHVLSASIPEIAEVSGHRVLE 1105
Query: 1390 ALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQY 1449
ALT C E ER E+LGDA+LK+ VSR LFL + EG+LTR R +V+N L +
Sbjct: 1106 ALTTEKCHERLSLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNLCRL 1165
Query: 1450 ALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNX 1509
A+ K LQ YI+ P+++ A G P T D +S K V + N
Sbjct: 1166 AIKKNLQVYIRDQALDPTQFFAFGH-PC--RVTCDEVAS-----KEV--------HSLNR 1209
Query: 1510 XXXXXXXXXXXXXXSSSYRVLSSKTLADVVEALIGVYYVEGGKDAANHLMKWIGIQVESD 1569
S + L KT+ADVVEAL+G + V+ G A +KWIG+ V+ +
Sbjct: 1210 DLGILESNTGEIRCSKGHHWLYKKTIADVVEALVGAFLVDSGFKGAVKFLKWIGVNVDFE 1269
Query: 1570 PEEV--GCPSRPACVPESVLRSVDFHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQ 1627
+V C + +P + +++ LE+ L KF +GLLV+A H S G CYQ
Sbjct: 1270 SLQVQDACIASRRYLPLTTRNNLE--TLENQLDYKFLHKGLLVQAFIHPSYNRHGGGCYQ 1327
Query: 1628 RLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGS 1687
RLEF+GDAVLD+L+T + F + L PG+LTDLR+ +VNNE A VAV L L S
Sbjct: 1328 RLEFLGDAVLDYLMTSYFFTVFPKLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCES 1387
Query: 1688 SALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVW 1747
L I D+ + L G S G + PKVLGD+VES GA+FLD G + + VW
Sbjct: 1388 IYLHEVIEDYTNFLASSPLASG-QSEGP---RCPKVLGDLVESCLGALFLDCGFNLNHVW 1443
Query: 1748 QVFQPLLDPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNLATVEVYI--DGVQVG 1805
+ LDP+ L + P++EL E CQ E A++ TVE+ + +G +
Sbjct: 1444 TMMLSFLDPVKNLSNLQISPIKELIELCQSYKWDREISATKKDGAFTVELKVTKNGCCLT 1503
Query: 1806 V-AQNPQKKMAQKLAAR 1821
V A K+ K AA+
Sbjct: 1504 VSATGRNKREGTKKAAQ 1520
|
|
| ZFIN|ZDB-GENE-030131-3445 dicer1 "Dicer1, Dcr-1 homolog (Drosophila)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 426 (155.0 bits), Expect = 7.2e-129, Sum P(8) = 7.2e-129
Identities = 110/322 (34%), Positives = 180/322 (55%)
Query: 725 IIFVERVVAALVLPKVFAEL----PSLSFVKSASLIGH--------NNSQEMRTFQMQET 772
IIFVER A+VL ++ E P L+++ S + GH N E+ + +E
Sbjct: 431 IIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPRNKQMEVEFRKQEEV 490
Query: 773 IAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMI 832
+ KFR LL+ATS+ EEG+DI +CN+V+RFDL +Y+QS+GRAR P S+YI++
Sbjct: 491 LRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPVSNYIMLA 550
Query: 833 ERGNLSHATF---LRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAVPGTVYQVESTG 889
+ TF L+ + E+ LR + + + + + + +P V + E G
Sbjct: 551 DSERTK--TFQEDLKTYKAIEKILRNKCSKSAECNDFELEPVTDDDNVLPPYVLRSEDGG 608
Query: 890 AVVSLNSAVGLIHFYCSQLPSDRYSILRPEF-IMERHEKPGGPTEYSCKLQLPCNAPFE- 947
V++N+A+G ++ YC++LPSD ++ L P+ +E + GG Y L LP N+P
Sbjct: 609 PRVTMNTAIGHVNRYCARLPSDPFTHLAPKCKTVEMNT--GG---YRSTLFLPINSPLRV 663
Query: 948 KLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLP-DKGSGEQQEKVDQNDEGE---P 1003
+ GPV + RLA++AV L C+KLH++G D L+P K + + +E++D +DE E P
Sbjct: 664 PVTGPVMNCARLAEKAVALLCCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVP 723
Query: 1004 -LPGTARHREFYPEGVADILQG 1024
PG+ + R+ P+ + + L+G
Sbjct: 724 GRPGSTKRRQCSPKAIPECLRG 745
|
|
| UNIPROTKB|Q9UPY3 DICER1 "Endoribonuclease Dicer" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 698 (250.8 bits), Expect = 3.4e-124, Sum P(4) = 3.4e-124
Identities = 231/753 (30%), Positives = 363/753 (48%)
Query: 305 RPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSIC----NDLQRQNKKMLAVFLVPK 360
R YQ+++LE A NTI L TG+GKT IAVLL + + D R K+ VFLV
Sbjct: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKR--TVFLVNS 102
Query: 361 VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS 420
V QQ +R + VG Y W +RW +EF QVL+MT + LN+L++
Sbjct: 103 ANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNVLKNG 162
Query: 421 IIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQV 480
+ + INLL+ DECH A+ HPY +M + S P + G+TAS +N G
Sbjct: 163 YLSLSDINLLVFDECHLAILDHPYREIMKLCENCPSC---PRILGLTASILN--GKCDPE 217
Query: 481 DCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQL-KQMEVA 539
+ KI LE L S T D L+++ P E+VV+ L+E+L ++E A
Sbjct: 218 ELEEKIQKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGPFTDRSGLYERLLMELEEA 277
Query: 540 VEEAAQSS-SRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANL-IQKLRA-INYAL 596
+ + S SK + + R V V +D A + +++L+ I +
Sbjct: 278 LNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQ 337
Query: 597 GELGQWCAYKVAQSFLT---ALQNDERANYQLDVKFQESYLSKVVSLL---------QCE 644
EL + +FL AL + + LD+KF + K++ +L Q E
Sbjct: 338 EELHRKFLL-FTDTFLRKIHALCEEHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFE 396
Query: 645 LVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTP 704
VE ++ V + + EIEE E +++ S +++ G + + T
Sbjct: 397 SVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPS--PFTNILCGIIFVERRYTA 454
Query: 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHN---NS 761
V + L+K +D P++ A + S +F+ IG N N
Sbjct: 455 VV---LNRLIKEAGKQD----------------PEL-AYISS-NFITGHG-IGKNQPRNK 492
Query: 762 QEMRTFQMQETIA-KFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGR 820
Q F+ QE + KFR LL+ATS+ EEG+DI +CN+V+RFDL +Y+QS+GR
Sbjct: 493 QMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 552
Query: 821 ARKPGSDYILMIERGNL-SHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAVP 879
AR P S+YI++ + + S L+ + E+ LR + + D + D P
Sbjct: 553 ARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETDIDPVMDDDDVFP 612
Query: 880 GTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQ 939
V + + G V++N+A+G I+ YC++LPSD ++ L P+ E P G T YS L
Sbjct: 613 PYVLRPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPK--CRTRELPDG-TFYST-LY 668
Query: 940 LPCNAPFE-KLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLP-DKGSGEQQEKVDQ 997
LP N+P + GP S +RLA++ V L C+KLH++G D L+P K + + +E++D
Sbjct: 669 LPINSPLRASIVGPPMSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDL 728
Query: 998 NDEGE---P-LPGTARHREFYPEGVADILQGEW 1026
+DE E P PG+ + R+ YP+ + + L+ +
Sbjct: 729 HDEEETSVPGRPGSTKRRQCYPKAIPECLRDSY 761
|
|
| UNIPROTKB|Q25BN1 DICER1 "Endoribonuclease Dicer" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 689 (247.6 bits), Expect = 9.9e-124, Sum P(4) = 9.9e-124
Identities = 229/754 (30%), Positives = 369/754 (48%)
Query: 305 RPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQ-NKK-MLAVFLVPKVP 362
R YQ+++LE A NTI L TG+GKT IAVLL + + ++ NK VFLV
Sbjct: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVNSAN 104
Query: 363 LVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSII 422
V QQ +R + VG Y + W ++W +EF QVLVMT + L +LR+ +
Sbjct: 105 QVAQQVSAVRTHSDLKVGEYSSLEVTESWTKEKWSQEFSKHQVLVMTCHVALTVLRNEYL 164
Query: 423 KMEAINLLILDECHHAVKKHPYSLVMS--EFYHTTSKEKRPSVFGMTASPVNLKGVSSQV 480
+ INLL+ DECH A++ HPY +M E Y + P + G+TAS +N G
Sbjct: 165 SLSNINLLVFDECHLAIQDHPYREIMKICEDYPSC-----PRILGLTASILN--GKCDPA 217
Query: 481 DCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQL-KQMEVA 539
+ KI LE L S T D L+++ P E+VV+ L+ +L ++++ A
Sbjct: 218 ELEEKIKKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGPYTDKSGLYGRLLRELDEA 277
Query: 540 VEEAAQSS-SRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANL-IQKLRA-INYAL 596
+ + S SK + + R V V +D A + +++L+ I +
Sbjct: 278 LHFLNDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQ 337
Query: 597 GELGQWCAYKVAQSFLT---ALQNDERANYQLDVKFQESYLSKVVSLL---------QCE 644
EL + +FL AL + + LD+KF + K++ +L Q E
Sbjct: 338 EELHRKFLL-FTDTFLRKIHALCEEHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFE 396
Query: 645 LVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTP 704
VE ++ V + + EIEE E +++ S +++ G + + T
Sbjct: 397 SVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPS--PFTNILCGIIFVERRYTA 454
Query: 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHN---NS 761
V + L+K +D P++ A + S +F+ IG N N
Sbjct: 455 VV---LNRLIKEAGKQD----------------PEL-AYISS-NFITGHG-IGKNQPRNK 492
Query: 762 Q-EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGR 820
Q E+ + +E + KFR LL+ATS+ EEG+DI +CN+V+RFDL +Y+QS+GR
Sbjct: 493 QMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 552
Query: 821 ARKPGSDYILMIERGNL-SHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAV- 878
AR P S+YI++ + + S L+ + E+ LR + + D S +T ++ D V
Sbjct: 553 ARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTSET-ETEPIVDDDDVF 611
Query: 879 PGTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKL 938
P V + + V++N+A+G I+ YC++LPSD ++ L P+ + E P T YS L
Sbjct: 612 PPYVLRTDENSPRVTINTAIGHINRYCARLPSDPFTHLAPK--CKTRELPDH-TFYST-L 667
Query: 939 QLPCNAPFE-KLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLP-DKGSGEQQEKVD 996
LP N+P + GP S RLA++ V L C+KLH++G D L+P K + + +E++D
Sbjct: 668 YLPINSPLRASIVGPPMSCARLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELD 727
Query: 997 QNDEGE---P-LPGTARHREFYPEGVADILQGEW 1026
+DE E P PG+ + R+ YP+ + + L+ +
Sbjct: 728 LHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSY 761
|
|
| UNIPROTKB|E2RIN4 DICER1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 690 (248.0 bits), Expect = 2.0e-123, Sum P(4) = 2.0e-123
Identities = 232/754 (30%), Positives = 365/754 (48%)
Query: 305 RPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSIC----NDLQRQNKKMLAVFLVPK 360
R YQ+++LE A NTI L TG+GKT IAVLL + + D R K+ VFLV
Sbjct: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKR--TVFLVNS 102
Query: 361 VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS 420
V QQ +R + VG Y W ++W +EF QVLVMT + LN+L++
Sbjct: 103 ANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKEKWNQEFTKHQVLVMTCYVALNVLKNG 162
Query: 421 IIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQV 480
+ + INLL+ DECH A+ HPY +M + S P + G+TAS +N G
Sbjct: 163 YLSLSDINLLVFDECHLAILDHPYREIMKLCENCPSC---PRILGLTASILN--GKCDPE 217
Query: 481 DCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLK-QMEVA 539
+ KI LE L S T D L+++ P E+VV+ L+ +L ++E A
Sbjct: 218 ELEEKIQKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGPFTDRSGLYGRLLVELEEA 277
Query: 540 VEEAAQSS-SRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANL-IQKLRA-INYAL 596
+ + S SK + + R V V +D A + +++L+ I +
Sbjct: 278 LNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQ 337
Query: 597 GELGQWCAYKVAQSFLT---ALQNDERANYQLDVKFQESYLSKVVSLL---------QCE 644
EL + +FL AL + + LD+KF + K++ +L Q E
Sbjct: 338 EELHRKFLL-FTDTFLRKIHALCEEHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFE 396
Query: 645 LVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTP 704
VE ++ V + + EIEE E +++ S +++ G + + T
Sbjct: 397 SVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPS--PFTNILCGIIFVERRYTA 454
Query: 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHN---NS 761
V + L+K +D P++ A + S +F+ IG N N
Sbjct: 455 VV---LNRLIKEAGKQD----------------PEL-AYISS-NFITGHG-IGKNQPRNK 492
Query: 762 QEMRTFQMQETIA-KFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGR 820
Q F+ QE + KFR LL+ATS+ EEG+DI +CN+V+RFDL +Y+QS+GR
Sbjct: 493 QMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 552
Query: 821 ARKPGSDYILMIERGNL-SHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAV- 878
AR P S+YI++ + + S L+ + E+ LR + + D D ++ D V
Sbjct: 553 ARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGET-DIEPVVDDDDVF 611
Query: 879 PGTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKL 938
P V + + G V++N+A+G I+ YC++LPSD ++ L P+ E P G T YS L
Sbjct: 612 PPYVLRPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPK--CRTRELPDG-TFYST-L 667
Query: 939 QLPCNAPFE-KLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLP-DKGSGEQQEKVD 996
LP N+P + GP S +RLA++ V L C+KLH++G D L+P K + + +E++D
Sbjct: 668 YLPINSPLRASIVGPPMSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELD 727
Query: 997 QNDEGE---P-LPGTARHREFYPEGVADILQGEW 1026
+DE E P PG+ + R+ YP+ + + L+ +
Sbjct: 728 LHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSY 761
|
|
| UNIPROTKB|F1NJX0 DICER1 "Endoribonuclease Dicer" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 689 (247.6 bits), Expect = 2.0e-123, Sum P(4) = 2.0e-123
Identities = 229/754 (30%), Positives = 369/754 (48%)
Query: 305 RPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQ-NKK-MLAVFLVPKVP 362
R YQ+++LE A NTI L TG+GKT IAVLL + + ++ NK VFLV
Sbjct: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVNSAN 104
Query: 363 LVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSII 422
V QQ +R + VG Y + W ++W +EF QVLVMT + L +LR+ +
Sbjct: 105 QVAQQVSAVRTHSDLKVGEYSSLEVTESWTKEKWSQEFSKHQVLVMTCHVALTVLRNEYL 164
Query: 423 KMEAINLLILDECHHAVKKHPYSLVMS--EFYHTTSKEKRPSVFGMTASPVNLKGVSSQV 480
+ INLL+ DECH A++ HPY +M E Y + P + G+TAS +N G
Sbjct: 165 SLSNINLLVFDECHLAIQDHPYREIMKICEDYPSC-----PRILGLTASILN--GKCDPA 217
Query: 481 DCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQL-KQMEVA 539
+ KI LE L S T D L+++ P E+VV+ L+ +L ++++ A
Sbjct: 218 ELEEKIKKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGPYTDKSGLYGRLLRELDEA 277
Query: 540 VEEAAQSS-SRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANL-IQKLRA-INYAL 596
+ + S SK + + R V V +D A + +++L+ I +
Sbjct: 278 LHFLNDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQ 337
Query: 597 GELGQWCAYKVAQSFLT---ALQNDERANYQLDVKFQESYLSKVVSLL---------QCE 644
EL + +FL AL + + LD+KF + K++ +L Q E
Sbjct: 338 EELHRKFLL-FTDTFLRKIHALCEEHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFE 396
Query: 645 LVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTP 704
VE ++ V + + EIEE E +++ S +++ G + + T
Sbjct: 397 SVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPS--PFTNILCGIIFVERRYTA 454
Query: 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHN---NS 761
V + L+K +D P++ A + S +F+ IG N N
Sbjct: 455 VV---LNRLIKEAGKQD----------------PEL-AYISS-NFITGHG-IGKNQPRNK 492
Query: 762 Q-EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGR 820
Q E+ + +E + KFR LL+ATS+ EEG+DI +CN+V+RFDL +Y+QS+GR
Sbjct: 493 QMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 552
Query: 821 ARKPGSDYILMIERGNL-SHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAV- 878
AR P S+YI++ + + S L+ + E+ LR + + D S +T ++ D V
Sbjct: 553 ARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTSET-ETEPIVDDDDVF 611
Query: 879 PGTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKL 938
P V + + V++N+A+G I+ YC++LPSD ++ L P+ + E P T YS L
Sbjct: 612 PPYVLRTDENSPRVTINTAIGHINRYCARLPSDPFTHLAPK--CKTRELPDH-TFYST-L 667
Query: 939 QLPCNAPFE-KLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLP-DKGSGEQQEKVD 996
LP N+P + GP S RLA++ V L C+KLH++G D L+P K + + +E++D
Sbjct: 668 YLPINSPLRASIVGPPMSCARLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELD 727
Query: 997 QNDEGE---P-LPGTARHREFYPEGVADILQGEW 1026
+DE E P PG+ + R+ YP+ + + L+ +
Sbjct: 728 LHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSY 761
|
|
| UNIPROTKB|A0MQH0 DICER1 "Endoribonuclease Dicer" [Cricetulus griseus (taxid:10029)] | Back alignment and assigned GO terms |
|---|
Score = 684 (245.8 bits), Expect = 2.1e-123, Sum P(4) = 2.1e-123
Identities = 227/750 (30%), Positives = 368/750 (49%)
Query: 305 RPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICN----DLQRQNKKMLAVFLVPK 360
R YQ+++LE A NTI L TG+GKT IAVLL + + + DL + K+ VFLV
Sbjct: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPRAKR--TVFLVNS 102
Query: 361 VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS 420
V QQ +R + VG Y W +RW +EF QVL+MT + LN+L++
Sbjct: 103 ANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWSQEFTKHQVLIMTCYVALNVLKNG 162
Query: 421 IIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQV 480
+ + INLL+ DECH A+ HPY +M S P + G+TAS +N G
Sbjct: 163 YLSLSDINLLVFDECHLAILDHPYREIMKL---CESCPSCPRILGLTASILN--GKCDPE 217
Query: 481 DCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQL-KQMEVA 539
+ KI LE L S T D L+++ P E+VV+ L+E+L ++E A
Sbjct: 218 ELEEKIQKLEKILKSNAETATDLVVLDRYASQPCEIVVDCGPFTDRSGLYERLLMELEEA 277
Query: 540 VEEAAQSS-SRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANL-IQKLRA-INYAL 596
+ + S SK + + R V V +D A + +++L+ I +
Sbjct: 278 INFINDCNVSVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQ 337
Query: 597 GELGQ-WCAYK-VAQSFLTALQNDERANYQLDVKFQESYLSKVVSLL---------QCEL 645
EL + + + + AL + + LD+K+ + K++ +L Q E
Sbjct: 338 EELHRKFLLFTDTLLRKIHALCEEHFSPASLDLKYVTPKVMKLLEILRKYKPYERQQFES 397
Query: 646 VEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPK 705
VE ++ V + + EIEE E +++ S +++ G + + T
Sbjct: 398 VEWYNNRNQDNYVSWSDSEDDDDDEEIEEKEKPETNFPS--PFTNILCGIIFVERRYTAV 455
Query: 706 VQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNN--SQE 763
V + L+K +D P++ A + S +F+ IG N S++
Sbjct: 456 V---LNRLIKEAGKQD----------------PEL-AYISS-NFITGHG-IGKNQPRSKQ 493
Query: 764 MRT-FQMQETIA-KFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRA 821
M F+ QE + KFR LL+ATSV EEG+DI +CN+V+RFDL +Y+QS+GRA
Sbjct: 494 MEAEFRKQEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA 553
Query: 822 RKPGSDYILMIERGNL-SHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAV-P 879
R P S+Y+++ + + S L+ + E+ LR + + D + D ++ D V P
Sbjct: 554 RAPISNYVMLADTDKIQSFEEDLKTYKAIEKILRNKCSKSVDGAEA-DVDAVVDDDDVFP 612
Query: 880 GTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQ 939
V + + G V++N+A+G ++ YC++LPSD ++ L P+ E P G T YS L
Sbjct: 613 PYVLRPDDGGPRVTINTAIGHVNRYCARLPSDPFTHLAPK--CRTQELPDG-TFYST-LY 668
Query: 940 LPCNAPFE-KLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLP-DKGSGEQQEKVDQ 997
LP N+P + GP +RLA++ V L C+KLH++G + L+P K + + +E++D
Sbjct: 669 LPINSPLRASIVGPPMGCVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDL 728
Query: 998 NDEGE---P-LPGTARHREFYPEGVADILQ 1023
+DE E P PG+ + R+ YP+ + + L+
Sbjct: 729 HDEEETSVPGRPGSTKRRQCYPKAIPECLR 758
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8LMR2 | DCL1_ORYSJ | 3, ., 1, ., 2, 6, ., - | 0.7724 | 0.8446 | 0.8661 | yes | no |
| Q9SP32 | DCL1_ARATH | 3, ., 1, ., 2, 6, ., - | 0.7349 | 0.9580 | 0.9690 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4 | LOW CONFIDENCE prediction! |
| 3rd Layer | 3.1.26.3 | LOW CONFIDENCE prediction! |
| 3rd Layer | 3.1.26 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1931 | |||
| cd02844 | 135 | cd02844, PAZ_CAF_like, PAZ domain, CAF_like subfam | 6e-50 | |
| COG1111 | 542 | COG1111, MPH1, ERCC4-like helicases [DNA replicati | 1e-43 | |
| COG0571 | 235 | COG0571, Rnc, dsRNA-specific ribonuclease [Transcr | 2e-41 | |
| cd00593 | 133 | cd00593, RIBOc, RIBOc | 7e-41 | |
| PRK00102 | 229 | PRK00102, rnc, ribonuclease III; Reviewed | 1e-40 | |
| TIGR02191 | 220 | TIGR02191, RNaseIII, ribonuclease III, bacterial | 2e-40 | |
| smart00535 | 129 | smart00535, RIBOc, Ribonuclease III family | 7e-37 | |
| pfam03368 | 91 | pfam03368, dsRNA_bind, Double stranded RNA binding | 3e-30 | |
| pfam00636 | 91 | pfam00636, Ribonuclease_3, Ribonuclease III domain | 5e-26 | |
| smart00949 | 138 | smart00949, PAZ, This domain is named PAZ after th | 5e-26 | |
| cd00593 | 133 | cd00593, RIBOc, RIBOc | 6e-25 | |
| smart00535 | 129 | smart00535, RIBOc, Ribonuclease III family | 1e-24 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 2e-21 | |
| pfam02170 | 114 | pfam02170, PAZ, PAZ domain | 5e-20 | |
| PRK13766 | 773 | PRK13766, PRK13766, Hef nuclease; Provisional | 7e-20 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 2e-16 | |
| PRK12371 | 235 | PRK12371, PRK12371, ribonuclease III; Reviewed | 3e-15 | |
| pfam00636 | 91 | pfam00636, Ribonuclease_3, Ribonuclease III domain | 6e-15 | |
| COG0571 | 235 | COG0571, Rnc, dsRNA-specific ribonuclease [Transcr | 2e-14 | |
| PRK00102 | 229 | PRK00102, rnc, ribonuclease III; Reviewed | 1e-13 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 1e-13 | |
| TIGR02191 | 220 | TIGR02191, RNaseIII, ribonuclease III, bacterial | 7e-13 | |
| cd00048 | 68 | cd00048, DSRM, Double-stranded RNA binding motif | 1e-12 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 2e-12 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 3e-12 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 9e-12 | |
| PRK13766 | 773 | PRK13766, PRK13766, Hef nuclease; Provisional | 3e-11 | |
| PRK12372 | 413 | PRK12372, PRK12372, ribonuclease III; Reviewed | 4e-11 | |
| PRK14718 | 467 | PRK14718, PRK14718, ribonuclease III; Provisional | 7e-11 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 9e-11 | |
| COG1204 | 766 | COG1204, COG1204, Superfamily II helicase [General | 1e-10 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 2e-10 | |
| smart00358 | 67 | smart00358, DSRM, Double-stranded RNA binding moti | 6e-10 | |
| PRK11192 | 434 | PRK11192, PRK11192, ATP-dependent RNA helicase Srm | 1e-09 | |
| cd02845 | 117 | cd02845, PAZ_piwi_like, PAZ domain, Piwi_like subf | 2e-09 | |
| smart00358 | 67 | smart00358, DSRM, Double-stranded RNA binding moti | 6e-09 | |
| pfam00035 | 66 | pfam00035, dsrm, Double-stranded RNA binding motif | 7e-09 | |
| cd02843 | 122 | cd02843, PAZ_dicer_like, PAZ domain, dicer_like su | 2e-08 | |
| cd02825 | 115 | cd02825, PAZ, PAZ domain, named PAZ after the prot | 7e-08 | |
| cd00593 | 133 | cd00593, RIBOc, RIBOc | 2e-07 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 2e-07 | |
| PLN00206 | 518 | PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel | 1e-06 | |
| pfam00035 | 66 | pfam00035, dsrm, Double-stranded RNA binding motif | 2e-06 | |
| pfam04851 | 100 | pfam04851, ResIII, Type III restriction enzyme, re | 2e-06 | |
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 3e-06 | |
| COG0571 | 235 | COG0571, Rnc, dsRNA-specific ribonuclease [Transcr | 5e-06 | |
| PRK00102 | 229 | PRK00102, rnc, ribonuclease III; Reviewed | 2e-05 | |
| PRK12371 | 235 | PRK12371, PRK12371, ribonuclease III; Reviewed | 2e-05 | |
| cd00048 | 68 | cd00048, DSRM, Double-stranded RNA binding motif | 2e-05 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 2e-05 | |
| TIGR02191 | 220 | TIGR02191, RNaseIII, ribonuclease III, bacterial | 2e-04 | |
| PRK10590 | 456 | PRK10590, PRK10590, ATP-dependent RNA helicase Rhl | 2e-04 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 4e-04 | |
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 0.001 | |
| PRK12372 | 413 | PRK12372, PRK12372, ribonuclease III; Reviewed | 0.002 | |
| PRK14718 | 467 | PRK14718, PRK14718, ribonuclease III; Provisional | 0.002 | |
| PRK11776 | 460 | PRK11776, PRK11776, ATP-dependent RNA helicase Dbp | 0.002 | |
| cd02846 | 114 | cd02846, PAZ_argonaute_like, PAZ domain, argonaute | 0.002 | |
| PRK00254 | 720 | PRK00254, PRK00254, ski2-like helicase; Provisiona | 0.003 |
| >gnl|CDD|239210 cd02844, PAZ_CAF_like, PAZ domain, CAF_like subfamily | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 6e-50
Identities = 61/148 (41%), Positives = 82/148 (55%), Gaps = 13/148 (8%)
Query: 1201 ASGLVPDREAMQIHNADMPTGKLMMADSCANAGDLEGRIVTAAHSGKRFYVESIRYEMTA 1260
A L+ R N + L +AD A DL+G +VTA H+G RFYV S ++ A
Sbjct: 1 AEVLLMHR--DYSTNEA--SDLLHLADGSFCACDLKGSVVTAPHNG-RFYVISGILDLNA 55
Query: 1261 ESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYCKNLLSPRFEHSEE 1320
SSFP KEG L Y++YA+Y+K+KYG+ L QPL++G+ + NLL RFE E
Sbjct: 56 NSSFPGKEG----LGYATYAEYFKEKYGIVLNHPNQPLLKGKQIFNLHNLLHNRFEEKGE 111
Query: 1321 QEGEGEEILDKTYYVFLPPELCFIHPLP 1348
E + Y+V LPPELC + LP
Sbjct: 112 SEEK----EKDRYFVELPPELCSVIDLP 135
|
CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. Length = 135 |
| >gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 168 bits (427), Expect = 1e-43
Identities = 139/549 (25%), Positives = 226/549 (41%), Gaps = 101/549 (18%)
Query: 303 QARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVP 362
+ R YQL++ +A KNT+ L TG GKT IA ++I + L+ K +FL P P
Sbjct: 15 EPRLYQLNIAAKALFKNTLVVLPTGLGKTFIAAMVIANR---LRWFGGK--VLFLAPTKP 69
Query: 363 LVYQQAEVIREQTGYVVGHYC---GEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH 419
LV Q AE R+ TG GE+ + + + K+V V T Q++ N L+
Sbjct: 70 LVLQHAEFCRKVTGIPEDEIAALTGEV-----RPEEREELWAKKKVFVATPQVVENDLKA 124
Query: 420 SIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVN-LKGVSS 478
I ++ ++LLI DE H AV + Y V E+ + K P + G+TASP + L+ +
Sbjct: 125 GRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRS---AKNPLILGLTASPGSDLEKIQE 181
Query: 479 QVDCAIKICNLESKLDS---VVCTIKDRK-ELEKHVPMPSEV--VVEYDKAASLWSLHEQ 532
V+ + I +E + + V +K K E K V +P E+ + + + A L +
Sbjct: 182 VVEN-LGIEKVEVRTEEDPDVRPYVKKIKVEWIK-VDLPEEIKEIRDLLRDA----LKPR 235
Query: 533 LKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAI 592
LK ++ G E V S ++++R I
Sbjct: 236 LKP----------------------LKELGVIESSSPV--------SKKDLLELRQIRLI 265
Query: 593 NYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGA--V 650
+ ++ S L A L+ + + + +L E A
Sbjct: 266 MAKNED--SDK-FR-LLSVLAEAIKLAHALELLETQGIRPFYQYLE-----KLEEEATKG 316
Query: 651 SKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLI 710
K AK + ++ F I E SG EH PK++ L
Sbjct: 317 GSKAAKSLLADPYFKRALRLLIRADE-------SGVEH---------------PKLEKLR 354
Query: 711 KILLKY-QHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNN---SQEMRT 766
+IL + + D R I+F E A ++ L + IG + + M
Sbjct: 355 EILKEQLEKNGDSRVIVFTEYRDTAE---EIVNFLKKIGIKARVRFIGQASREGDKGMSQ 411
Query: 767 FQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRA--RKP 824
+ +E I +FR G +LVATSV EEGLDI + ++VI ++ + + IQ +GR ++
Sbjct: 412 KEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRKRK 471
Query: 825 GSDYILMIE 833
G +L+ E
Sbjct: 472 GRVVVLVTE 480
|
Length = 542 |
| >gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 2e-41
Identities = 84/254 (33%), Positives = 113/254 (44%), Gaps = 36/254 (14%)
Query: 1591 DFHALEDALKIKFKDRGLLVEAITHASR--PSSGVSCYQRLEFVGDAVLDHLITKHLFFS 1648
ALE L FKD+ LL +A+TH S V +RLEF+GDAVL ++ ++LF
Sbjct: 7 KLEALEKKLGYTFKDKELLEQALTHRSYANEHKAVENNERLEFLGDAVLGLVVAEYLFKK 66
Query: 1649 YTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKP 1708
Y NLP G L+ LRAA V+ E+ A +A + L +LR G E
Sbjct: 67 YPNLPEGELSKLRAALVSEESLAEIARELGLGDYLRLGKG---------------EEKSG 111
Query: 1709 GFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMV---TPETLPM 1765
G +L D E++ GAI+LDSG + + L P +
Sbjct: 112 GRRR--------ESILADAFEALIGAIYLDSGLEA--ARKFILKLFLPRLEEIDAGDQFK 161
Query: 1766 HPVRELQERCQQQAEGL-EYK-ASRSGN----LATVEVYIDGVQVGVAQNPQKKMAQKLA 1819
P LQE Q Q L EY+ G TVEV + G ++G + KK A++ A
Sbjct: 162 DPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGRSKKEAEQAA 221
Query: 1820 ARNALAVLKEKETA 1833
A AL L KE A
Sbjct: 222 AEQALKKLGVKEPA 235
|
Length = 235 |
| >gnl|CDD|238333 cd00593, RIBOc, RIBOc | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 7e-41
Identities = 53/157 (33%), Positives = 80/157 (50%), Gaps = 26/157 (16%)
Query: 1608 LLVEAITHASRPS-SGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVN 1666
LL+EA+TH S + G +RLEF+GDAVL+ ++T++LF + +L G LT LR+A V+
Sbjct: 2 LLLEALTHPSYANEHGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVS 61
Query: 1667 NENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGD 1726
NE AR+A + L +LR G R PK+L D
Sbjct: 62 NETLARLARELGLGKYLRLGKGEEKSGGRL-----------------------RPKILAD 98
Query: 1727 IVESIAGAIFLDSGRDTSVVWQVFQPLLDPMVTPETL 1763
+ E++ GAI+LD G + + LL P++ +L
Sbjct: 99 VFEALIGAIYLDGGFE--AARKFLLRLLGPLIEEISL 133
|
Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing. Length = 133 |
| >gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Score = 149 bits (380), Expect = 1e-40
Identities = 78/254 (30%), Positives = 117/254 (46%), Gaps = 36/254 (14%)
Query: 1588 RSVDFHALEDALKIKFKDRGLLVEAITHAS--RPSSGVSCYQRLEFVGDAVLDHLITKHL 1645
D L+ L FKD LL++A+TH S + G+ +RLEF+GDAVL+ +++++L
Sbjct: 1 MKKDLEELQKKLGYTFKDPELLIQALTHRSYANENKGLKHNERLEFLGDAVLELVVSEYL 60
Query: 1646 FFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEEL 1705
F + +L G L+ LRAA V E+ A +A + L +L G E
Sbjct: 61 FKRFPDLDEGDLSKLRAALVREESLAEIARELGLGEYLLLGKG---------------EE 105
Query: 1706 LKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMVT---PET 1762
G P +L D E++ GAI+LD G + + L +P +
Sbjct: 106 KSGGRRR--------PSILADAFEALIGAIYLDQGLEA--ARKFILRLFEPRIEEIDLGD 155
Query: 1763 LPMHPVRELQERCQQQAEGL-EYKASRSGNLA-----TVEVYIDGVQVGVAQNPQKKMAQ 1816
L LQE Q + L EY+ + A TVEV ++G ++G KK A+
Sbjct: 156 LVKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGTGSSKKEAE 215
Query: 1817 KLAARNALAVLKEK 1830
+ AA+ AL LKEK
Sbjct: 216 QAAAKQALKKLKEK 229
|
Length = 229 |
| >gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial | Back alignment and domain information |
|---|
Score = 148 bits (377), Expect = 2e-40
Identities = 76/245 (31%), Positives = 111/245 (45%), Gaps = 37/245 (15%)
Query: 1595 LEDALKIKFKDRGLLVEAITHAS---RPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTN 1651
LE L KFK++ LL +A+TH+S GV +RLEF+GDAVL ++ ++LF ++ +
Sbjct: 1 LEKRLGYKFKNKELLEQALTHSSYANEHHKGVKNNERLEFLGDAVLGLVVAEYLFKNFPD 60
Query: 1652 LPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFN 1711
L G L+ LRAA V+ E+ A VA + L L G R
Sbjct: 61 LSEGELSKLRAALVSEESLAEVARELGLGKFLLLGKGEEKSGGRR--------------- 105
Query: 1712 SFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMVT---PETLPMHPV 1768
+L D E++ GAI+LDSG + + LL P + E
Sbjct: 106 --------RESILADAFEALIGAIYLDSGLE--AARKFILKLLIPRIDAIEKEETLKDYK 155
Query: 1769 RELQERCQQQAEGL-EYKASRSGNLA-----TVEVYIDGVQVGVAQNPQKKMAQKLAARN 1822
LQE Q + + L EY+ + TVEV ++G G + KK A++ AA+
Sbjct: 156 TALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKGKSKKEAEQNAAKA 215
Query: 1823 ALAVL 1827
AL L
Sbjct: 216 ALEKL 220
|
This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family [Transcription, RNA processing]. Length = 220 |
| >gnl|CDD|197778 smart00535, RIBOc, Ribonuclease III family | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 7e-37
Identities = 53/153 (34%), Positives = 79/153 (51%), Gaps = 26/153 (16%)
Query: 1608 LLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNN 1667
LL+ A+THAS S+ +RLEF+GDAVL+ ++T++L+ Y +L G L+ LR+A V+N
Sbjct: 2 LLLRALTHASY-SNEHEHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSN 60
Query: 1668 ENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDI 1727
E AR+A K L +R G RD PK+L D+
Sbjct: 61 ETLARLAKKLGLGEFIRLGRGEAISGGRDK-----------------------PKILADV 97
Query: 1728 VESIAGAIFLDSGRDTSVVWQVFQPLLDPMVTP 1760
E++ GAI+LDSG + + + LL P +
Sbjct: 98 FEALIGAIYLDSGLE--AAREFIRDLLGPRLDE 128
|
Length = 129 |
| >gnl|CDD|190615 pfam03368, dsRNA_bind, Double stranded RNA binding domain | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 3e-30
Identities = 40/94 (42%), Positives = 55/94 (58%), Gaps = 5/94 (5%)
Query: 897 AVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFEKLEGPVCSS 956
A+ L++ YC+ LPSD ++ LRPEF +E + GG Y C + LP N+P ++ G S
Sbjct: 1 AIQLLNRYCATLPSDPFTSLRPEFSVEPVD--GG---YVCTVILPLNSPVREIVGKPMRS 55
Query: 957 MRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGE 990
RLA+Q+ ACKKLHE+G D LLP
Sbjct: 56 KRLAKQSAAFKACKKLHELGELNDHLLPIGKERV 89
|
This domain is a divergent double stranded RNA-binding domain. It is found in members of the Dicer protein family which function in RNA interference, an evolutionarily conserved mechanism for gene silencing using double-stranded RNA (dsRNA) molecules. Length = 91 |
| >gnl|CDD|216036 pfam00636, Ribonuclease_3, Ribonuclease III domain | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 5e-26
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 23/114 (20%)
Query: 1627 QRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHG 1686
+RLEF+GDAVL+ ++++L+ + +L G L LR+A V+NE A++A K L +LR G
Sbjct: 1 ERLEFLGDAVLELYVSEYLYEKFPDLSEGELHRLRSALVSNEALAKLARKLGLDKYLREG 60
Query: 1687 SSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSG 1740
+ ++ KVL D E++ GA++LD G
Sbjct: 61 EGDIVKRASV-----------------------KDKVLADAFEALIGALYLDGG 91
|
Length = 91 |
| >gnl|CDD|198017 smart00949, PAZ, This domain is named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 5e-26
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 26/150 (17%)
Query: 1221 GKLMMADSCANAGDLEGRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYA 1280
+ D CA DL+G IV ++ K + ++ I + + +S+F + +G ++
Sbjct: 15 NRSNFQDRCAK--DLKGLIVLTRYNNKTYRIDDIDWNLAPKSTFEKSDG-----SEITFV 67
Query: 1281 DYYKQKYGVELIFKKQPLIRGRGVSYCKNLLSPRFEHSEEQEGEGEEILDKTYYVFLPPE 1340
+YYKQKY + + QPL+ + Q G+GE + LPPE
Sbjct: 68 EYYKQKYNITIRDPNQPLL------VSRPKRRR------NQNGKGEPV-------LLPPE 108
Query: 1341 LCFIHPLPGSLVRGAQRLPSIMRRVESMLL 1370
LCFI L + + + SI R L
Sbjct: 109 LCFITGLTDRMRKDFMLMKSIADRTRLSPL 138
|
This domain is found in two families of proteins that are involved in post-transcriptional gene silencing. These are the Piwi family and the Dicer family, that includes the Carpel factory protein. The function of the domains is unknown but has been suggested to mediate complex formation between proteins of the Piwi and Dicer families by hetero-dimerisation. The three-dimensional structure of this domain has been solved. The PAZ domain is composed of two subdomains. One subdomain is similar to the OB fold, albeit with a different topology. The OB-fold is well known as a single-stranded nucleic acid binding fold. The second subdomain is composed of a beta-hairpin followed by an alpha-helix. The PAZ domains shows low-affinity nucleic acid binding and appears to interact with the 3' ends of single-stranded regions of RNA in the cleft between the two subdomains. PAZ can bind the characteristic two-base 3' overhangs of siRNAs, indicating that although PAZ may not be a primary nucleic acid binding site in Dicer or RISC, it may contribute to the specific and productive incorporation of siRNAs and miRNAs into the RNAi pathway. Length = 138 |
| >gnl|CDD|238333 cd00593, RIBOc, RIBOc | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 6e-25
Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 1385 SKILEALTAASCQE---TFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMV 1441
S +LEALT S F ER E LGDA L+ VV+ +LF K+P EG LTR+R +V
Sbjct: 1 SLLLEALTHPSYANEHGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALV 60
Query: 1442 SNLVLYQYALSKGLQSYIQADRFAPSR 1468
SN L + A GL Y++ +
Sbjct: 61 SNETLARLARELGLGKYLRLGKGEEKS 87
|
Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing. Length = 133 |
| >gnl|CDD|197778 smart00535, RIBOc, Ribonuclease III family | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 1e-24
Identities = 35/85 (41%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 1385 SKILEALTAASCQETF-CYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSN 1443
S +L ALT AS ER E LGDA L+ VV+ +L+ KYP EG L+R+R +VSN
Sbjct: 1 SLLLRALTHASYSNEHEHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSN 60
Query: 1444 LVLYQYALSKGLQSYIQADRFAPSR 1468
L + A GL +I+ R
Sbjct: 61 ETLARLAKKLGLGEFIRLGRGEAIS 85
|
Length = 129 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 93.7 bits (233), Expect = 2e-21
Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 9/178 (5%)
Query: 297 EKMPEEQARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLA 354
EK E RPYQ + +E ++ I TG+GKTL A+L L+R
Sbjct: 2 EKFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALL---PALEALKRGKGGR-V 57
Query: 355 VFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILL 414
+ LVP L Q AE +++ + G G D Q + E +LV T LL
Sbjct: 58 LVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLL 117
Query: 415 NILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVN 472
++L + + + ++L+ILDE H + + + + K + + ++A+P
Sbjct: 118 DLLENDKLSLSNVDLVILDEAHR-LLDGGFGDQLEKLLKLLPKNVQ--LLLLSATPPE 172
|
Length = 201 |
| >gnl|CDD|216914 pfam02170, PAZ, PAZ domain | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 5e-20
Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 32/121 (26%)
Query: 1231 NAGDLEGRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVE 1290
L+G IV ++ + + ++ I ++ T S+FP K+G S A+Y+K+KY +
Sbjct: 25 FTKALKGLIVETTYNNRTYRIDGITWDPTPNSTFPLKDG-----GEISVAEYFKEKYNIT 79
Query: 1291 LIFKKQPLIRGRGVSYCKNLLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHPLPGS 1350
L + PL+ K +LPPELCFI
Sbjct: 80 LKYPNLPLLVVGR---------------------------KKKPNYLPPELCFITGGQRY 112
Query: 1351 L 1351
+
Sbjct: 113 M 113
|
This domain is named PAZ after the proteins Piwi Argonaut and Zwille. This domain is found in two families of proteins that are involved in post-transcriptional gene silencing. These are the Piwi family and the Dicer family, that includes the Carpel factory protein. The function of the domains is unknown but has been suggested to mediate complex formation between proteins of the Piwi and Dicer families by hetero-dimerisation. The three-dimensional structure of this domain has been solved. The PAZ domain is composed of two subdomains. One subdomain is similar to the OB fold, albeit with a different topology. The OB-fold is well known as a single-stranded nucleic acid binding fold. The second subdomain is composed of a beta-hairpin followed by an alpha-helix. The PAZ domains shows low-affinity nucleic acid binding and appears to interact with the 3' ends of single-stranded regions of RNA in the cleft between the two subdomains. PAZ can bind the characteristic two-base 3' overhangs of siRNAs, indicating that although PAZ may not be a primary nucleic acid binding site in Dicer or RISC, it may contribute to the specific and productive incorporation of siRNAs and miRNAs into the RNAi pathway. Length = 114 |
| >gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 7e-20
Identities = 63/173 (36%), Positives = 90/173 (52%), Gaps = 20/173 (11%)
Query: 303 QARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVP 362
+AR YQ + A KKNT+ L TG GKT IA+L+I L ++ K+L L P P
Sbjct: 15 EARLYQQLLAATALKKNTLVVLPTGLGKTAIALLVIAER---LHKKGGKVL--ILAPTKP 69
Query: 363 LVYQQAEVIRE-----QTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNIL 417
LV Q AE R+ + VV + GE+ + +R ++ +V+V T Q++ N L
Sbjct: 70 LVEQHAEFFRKFLNIPEEKIVV--FTGEVSPE----KR-AELWEKAKVIVATPQVIENDL 122
Query: 418 RHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASP 470
I +E ++LLI DE H AV + Y + YH +K P V G+TASP
Sbjct: 123 IAGRISLEDVSLLIFDEAHRAVGNYAYVYIAER-YHEDAKN--PLVLGLTASP 172
|
Length = 773 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 2e-16
Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 11/154 (7%)
Query: 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY 377
++ + TG+GKTL A+L I +L K + L P L Q AE ++E G
Sbjct: 1 RDVLLAAPTGSGKTLAALLPI----LELLDSLKGGQVLVLAPTRELANQVAERLKELFGE 56
Query: 378 VVG-HYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECH 436
+ Y + + D ++V T LL+ L + ++ ++LLILDE H
Sbjct: 57 GIKVGYLIGGTSIKQQEKLLSGKTD---IVVGTPGRLLDELERLKLSLKKLDLLILDEAH 113
Query: 437 HAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASP 470
+ + L+ + K+++ V ++A+P
Sbjct: 114 R-LLNQGFGLLGLKILLKLPKDRQ--VLLLSATP 144
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|171444 PRK12371, PRK12371, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 3e-15
Identities = 68/248 (27%), Positives = 104/248 (41%), Gaps = 40/248 (16%)
Query: 1584 ESVLRSVDFHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITK 1643
+ VL + LE+ +F ++ L A+TH+S +S Y+RLEF+GD VL + +
Sbjct: 4 KMVLAAATASILEERTGHRFANKERLERALTHSSARASKQGNYERLEFLGDRVLGLCVAE 63
Query: 1644 HLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLE 1703
LF ++ + G L+ VN E A +A + LH +R GS VK
Sbjct: 64 MLFEAFPDASEGELSVRLNQLVNAETCAAIADEIGLHDLIRTGSD---------VK---- 110
Query: 1704 ELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMVTPETL 1763
L + V D+VE++ AI+LD G + + +P + L
Sbjct: 111 ----------KLTGKRLLNVRADVVEALIAAIYLDGGLEAA------RPFIQRYWQKRAL 154
Query: 1764 PMHPVR-----ELQERCQQQAEGL-EYK-ASRSG----NLATVEVYIDGVQVGVAQNPQK 1812
R ELQE Q Y+ SRSG TVEV + G + K
Sbjct: 155 ETDAARRDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETGEGRSK 214
Query: 1813 KMAQKLAA 1820
+ A+++AA
Sbjct: 215 RAAEQVAA 222
|
Length = 235 |
| >gnl|CDD|216036 pfam00636, Ribonuclease_3, Ribonuclease III domain | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 6e-15
Identities = 26/66 (39%), Positives = 37/66 (56%)
Query: 1403 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQAD 1462
ER E LGDA L+ VS +L+ K+P EG+L R+R +VSN L + A GL Y++
Sbjct: 1 ERLEFLGDAVLELYVSEYLYEKFPDLSEGELHRLRSALVSNEALAKLARKLGLDKYLREG 60
Query: 1463 RFAPSR 1468
+
Sbjct: 61 EGDIVK 66
|
Length = 91 |
| >gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 2e-14
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 1373 QLKDKINYPVPASKILE-ALTAASC----QETFCYERAELLGDAYLKWVVSRFLFLKYPQ 1427
L+ K+ Y ++LE ALT S + ER E LGDA L VV+ +LF KYP
Sbjct: 10 ALEKKLGYTFKDKELLEQALTHRSYANEHKAVENNERLEFLGDAVLGLVVAEYLFKKYPN 69
Query: 1428 KHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQ 1460
EG+L+++R +VS L + A GL Y++
Sbjct: 70 LPEGELSKLRAALVSEESLAEIARELGLGDYLR 102
|
Length = 235 |
| >gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 1e-13
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 1374 LKDKINYPVPASKIL-EALTAASCQETFC----YERAELLGDAYLKWVVSRFLFLKYPQK 1428
L+ K+ Y ++L +ALT S ER E LGDA L+ VVS +LF ++P
Sbjct: 8 LQKKLGYTFKDPELLIQALTHRSYANENKGLKHNERLEFLGDAVLELVVSEYLFKRFPDL 67
Query: 1429 HEGQLTRMRQQMVSNLVLYQYALSKGLQSYI 1459
EG L+++R +V L + A GL Y+
Sbjct: 68 DEGDLSKLRAALVREESLAEIARELGLGEYL 98
|
Length = 229 |
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 1e-13
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 761 SQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGR 820
SQE R +E + FR+G+ +LVAT VA G+D+ N+VI +DL +YIQ GR
Sbjct: 18 SQEER----EEILEDFRNGKSKVLVATDVAGRGIDLPDVNLVINYDLPWNPASYIQRIGR 73
Query: 821 A 821
A
Sbjct: 74 A 74
|
The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Length = 78 |
| >gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 7e-13
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 1388 LEALTAASCQ-----ETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVS 1442
+ALT +S ER E LGDA L VV+ +LF +P EG+L+++R +VS
Sbjct: 16 EQALTHSSYANEHHKGVKNNERLEFLGDAVLGLVVAEYLFKNFPDLSEGELSKLRAALVS 75
Query: 1443 NLVLYQYALSKGLQSYI 1459
L + A GL ++
Sbjct: 76 EESLAEVARELGLGKFL 92
|
This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family [Transcription, RNA processing]. Length = 220 |
| >gnl|CDD|238007 cd00048, DSRM, Double-stranded RNA binding motif | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 1e-12
Identities = 27/69 (39%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 1858 LNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDS 1917
L ++ +R P+P Y V E GP HA RFT V V G E G S K+AK +
Sbjct: 6 LQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITG---EGEG---SSKKEAKQN 59
Query: 1918 AAVLLLELL 1926
AA L L
Sbjct: 60 AAEAALRKL 68
|
Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases. Length = 68 |
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 2e-12
Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
Query: 761 SQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGR 820
SQE R +E + KF +G++ +LVAT VAE GLD+ ++VI +DL + +YIQ GR
Sbjct: 22 SQEER----EEILDKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGR 77
Query: 821 ARKPG 825
A + G
Sbjct: 78 AGRAG 82
|
Length = 82 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 3e-12
Identities = 35/141 (24%), Positives = 58/141 (41%), Gaps = 19/141 (13%)
Query: 305 RPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPL 363
P Q + K+ + TG+GKTL +L I L + A+ L P L
Sbjct: 1 TPIQAQAIPAILSGKDVLVQAPTGSGKTLAFLL---PILQALLPKKGGPQALVLAPTREL 57
Query: 364 VYQQAEVIRE-------QTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNI 416
Q E +++ + + G G + R ++ +LV T LL++
Sbjct: 58 AEQIYEELKKLFKILGLRVALLTG------GTSLKEQARKLKK-GKADILVGTPGRLLDL 110
Query: 417 LRHSIIKM-EAINLLILDECH 436
LR +K+ + + LL+LDE H
Sbjct: 111 LRRGKLKLLKNLKLLVLDEAH 131
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 9e-12
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 10/117 (8%)
Query: 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEM 764
K+++L++ LLK + + +IF ++ L + + + SQE
Sbjct: 13 KLEALLE-LLKEHLKKGGKVLIFCPSKKMLD---ELAELLRKPGI--KVAALHGDGSQEE 66
Query: 765 RTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRA 821
R ++ FR+G + +LVAT V G+D+ +VVI +DL + +Y+Q GRA
Sbjct: 67 REEVLK----DFREGEIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRA 119
|
Length = 131 |
| >gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 3e-11
Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 16/139 (11%)
Query: 704 PKVQSLIKILLK-YQHTEDFRAIIF------VERVVAALVLPKVFAELPSLSFVKSASLI 756
PK++ L +I+ + D R I+F E++V L + A FV AS
Sbjct: 347 PKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAV----RFVGQAS-- 400
Query: 757 GHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQ 816
+ + M + E + KFR G +LV+TSVAEEGLDI ++VI ++ + + IQ
Sbjct: 401 -KDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQ 459
Query: 817 SRGRA--RKPGSDYILMIE 833
+GR ++ G +L+ +
Sbjct: 460 RKGRTGRQEEGRVVVLIAK 478
|
Length = 773 |
| >gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Score = 66.9 bits (163), Expect = 4e-11
Identities = 74/264 (28%), Positives = 119/264 (45%), Gaps = 37/264 (14%)
Query: 1595 LEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPP 1654
LE L+ +F++ LL +A+TH S ++ +RLEF+GD+VL+ + LF + L
Sbjct: 6 LESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFGKLDE 62
Query: 1655 GRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFG 1714
G L+ +RA V ++ +A + LR G EL GF
Sbjct: 63 GDLSRVRANLVKQQSLYEIAQALNISEGLRLGEG---------------ELRSGGF---- 103
Query: 1715 LGDCKAPKVLGDIVESIAGAIFLDSGRDTS--VVWQVFQPLLDPMVTPETLPMHPVRELQ 1772
+ P +L D E+I GA+FLD G + + V+ +++ P+LD + P TL LQ
Sbjct: 104 ----RRPSILADAFEAIIGAVFLDGGFEAAQGVIKRLYVPILD-HIDPRTLGKDAKTLLQ 158
Query: 1773 ERCQQQAEGL-EYKASRSGNLA-----TVEVYIDGVQVGVA-QNPQKKMAQKLAARNAL- 1824
E Q L Y + A VE + + V V+ ++ A++ AA+ AL
Sbjct: 159 EYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGSGASRRAAEQAAAKKALD 218
Query: 1825 AVLKEKETAEAKEKGDENGKKRKN 1848
V+ AK K +N + K+
Sbjct: 219 EVMAAAPMLAAKPKRSKNARASKH 242
|
Length = 413 |
| >gnl|CDD|173181 PRK14718, PRK14718, ribonuclease III; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (161), Expect = 7e-11
Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 29/184 (15%)
Query: 1595 LEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPP 1654
LE L+ +F++ LL +A+TH S ++ +RLEF+GD+VL+ + LF + L
Sbjct: 6 LESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFGKLDE 62
Query: 1655 GRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFG 1714
G L+ +RA V ++ +A + LR G EL GF
Sbjct: 63 GDLSRVRANLVKQQSLYEIAQALNISDGLRLGEG---------------ELRSGGF---- 103
Query: 1715 LGDCKAPKVLGDIVESIAGAIFLDSGRDTS--VVWQVFQPLLDPMVTPETLPMHPVRELQ 1772
+ P +L D E+I GA+FLD G + + V+ +++ P+LD + P TL LQ
Sbjct: 104 ----RRPSILADAFEAIIGAVFLDGGFEAAQGVIKRLYVPILD-HIDPRTLGKDAKTLLQ 158
Query: 1773 ERCQ 1776
E Q
Sbjct: 159 EYLQ 162
|
Length = 467 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 9e-11
Identities = 43/178 (24%), Positives = 64/178 (35%), Gaps = 30/178 (16%)
Query: 299 MPEEQARPYQLDVLEQ-----AKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKML 353
E + RPYQ + L+ ++ + L TGAGKT++A I + + L
Sbjct: 32 AFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL-------KRSTL 84
Query: 354 AVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQIL 413
LVP L+ Q AE +++ G G E + +V V T Q L
Sbjct: 85 --VLVPTKELLDQWAEALKKFLLL--NDEIGIYGGGEK-------ELEPAKVTVATVQTL 133
Query: 414 LNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471
L+I DE HH Y ++ P G+TA+P
Sbjct: 134 ARRQLLDEFLGNEFGLIIFDEVHHLPAP-SYRRILELLSA-----AYP-RLGLTATPE 184
|
Length = 442 |
| >gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 1e-10
Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 27/164 (16%)
Query: 288 KVGKKSEAKEKMPEEQARPYQLDVLEQA-------------KKKNTIAFLETGAGKTLIA 334
K K + +K K+ + + D +++ +N + TG+GKTLIA
Sbjct: 5 KEEKLATSKVKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIA 64
Query: 335 VLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR--EQTGYVVGHYCGEMGQDFWD 392
+L +I + L K V++VP L ++ E E+ G VG G+ D
Sbjct: 65 LL---AILSTLLEGGGK--VVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDLDDER 119
Query: 393 AQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECH 436
R V+V T + L ++ R +E ++L+++DE H
Sbjct: 120 LAR-------YDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIH 156
|
Length = 766 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 2e-10
Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 12/117 (10%)
Query: 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEM 764
K++ L+K+L R I+FV L + + K A+L G + QE
Sbjct: 260 KLELLLKLLKDEDEG---RVIVFVRTKRLVEELAESLRKRG----FKVAALHG-DLPQEE 311
Query: 765 RTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRA 821
R + KF+DG + +LVAT VA GLDI + VI +DL Y+ GR
Sbjct: 312 RD----RALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRT 364
|
Length = 513 |
| >gnl|CDD|214634 smart00358, DSRM, Double-stranded RNA binding motif | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 6e-10
Identities = 27/69 (39%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 1858 LNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDS 1917
L ++ +R P P Y V+E GP HA RFT V+V G E G S K+AK
Sbjct: 5 LQELAQKRKLP-PEYELVKEEGPDHAPRFTVTVKVGGKRTG---EGEG---SSKKEAKQR 57
Query: 1918 AAVLLLELL 1926
AA L L
Sbjct: 58 AAEAALRSL 66
|
Length = 67 |
| >gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-09
Identities = 47/145 (32%), Positives = 65/145 (44%), Gaps = 36/145 (24%)
Query: 709 LIKILLKYQHTEDFRAIIFV---ERVVAALVLPKVFAELPSL---SFVKSASLIGHNNSQ 762
L+ LLK R+I+FV ERV EL + + L G
Sbjct: 235 LLCHLLKQPEVT--RSIVFVRTRERV----------HELAGWLRKAGINCCYLEG----- 277
Query: 763 EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAY---IQSRG 819
EM + E I + DGRV +LVAT VA G+DI + VI FD+ ++ Y I G
Sbjct: 278 EMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTG 337
Query: 820 RARKPGS--------DYILM--IER 834
RA + G+ D++L+ IER
Sbjct: 338 RAGRKGTAISLVEAHDHLLLGKIER 362
|
Length = 434 |
| >gnl|CDD|239211 cd02845, PAZ_piwi_like, PAZ domain, Piwi_like subfamily | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 2e-09
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 25/99 (25%)
Query: 1247 KRFY-VESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVS 1305
+ Y ++ I ++ T S+F + +G ++ +YYK++Y +E+ QPL+ VS
Sbjct: 39 NKTYRIDDIDFDKTPLSTFKKSDG-----TEITFVEYYKKQYNIEITDLNQPLL----VS 89
Query: 1306 YCKNLLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFI 1344
K + + GE E I +L PELCF+
Sbjct: 90 RPKRR--------DPRGGEKEPI-------YLIPELCFL 113
|
In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. Length = 117 |
| >gnl|CDD|214634 smart00358, DSRM, Double-stranded RNA binding motif | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 6e-09
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 1767 PVRELQERCQQQAEGLEYK-ASRSGNLA----TVEVYIDGVQVGVAQNPQKKMAQKLAAR 1821
P LQE Q++ EY+ G TV V + G + G + KK A++ AA
Sbjct: 1 PKSLLQELAQKRKLPPEYELVKEEGPDHAPRFTVTVKVGGKRTGEGEGSSKKEAKQRAAE 60
Query: 1822 NALAVLK 1828
AL LK
Sbjct: 61 AALRSLK 67
|
Length = 67 |
| >gnl|CDD|215670 pfam00035, dsrm, Double-stranded RNA binding motif | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 7e-09
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 1767 PVRELQERCQQQAEGLEYKASRSG-----NLATVEVYIDGVQVGVAQNPQKKMAQKLAAR 1821
P LQE CQ++ Y+ TV V ++G + G KK A++LAA
Sbjct: 1 PKSLLQELCQKKGPKPPYEYVEEEGPPHSPTFTVTVTVNGKKYGTGTGSSKKEAKQLAAE 60
Query: 1822 NALAVL 1827
AL L
Sbjct: 61 KALQKL 66
|
Sequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen, which is involved in localisation of at least five different mRNAs in the early Drosophila embryo. Also by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA. Length = 66 |
| >gnl|CDD|239209 cd02843, PAZ_dicer_like, PAZ domain, dicer_like subfamily | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-08
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 1248 RFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYC 1307
FYV I ++ S FP GP EY ++ +YYK+KY +++ QPL+ S
Sbjct: 58 YFYVAEICTDLRPLSKFP------GP-EYETFEEYYKKKYKLDIQNLNQPLLDVDHTSTR 110
Query: 1308 KNLLSPRFE 1316
NLL+PR+
Sbjct: 111 LNLLTPRYV 119
|
Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. Length = 122 |
| >gnl|CDD|239207 cd02825, PAZ, PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 7e-08
Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 30/111 (27%)
Query: 1235 LEGRIVTAAHSG-KRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIF 1293
L+G V H+ R Y + A S +G + ++ADY+K++Y + L
Sbjct: 33 LKGLKVEDTHNPLNRVYRPDGETRLKAPSQLKHSDG-----KEITFADYFKERYNLTLTD 87
Query: 1294 KKQPLIRGRGVSYCKNLLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFI 1344
QPL+ + S K+Y + LPPELC I
Sbjct: 88 LNQPLLIVKFSS------------------------KKSYSILLPPELCVI 114
|
PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain. Length = 115 |
| >gnl|CDD|238333 cd00593, RIBOc, RIBOc | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 1521 EGDSSSYRVLSSKTLADVVEALIGVYYVEGGKDAANHLMKW-IGIQVESDPE 1571
+G+ S L K LADV EALIG Y++GG +AA + +G +E
Sbjct: 82 KGEEKSGGRLRPKILADVFEALIGAIYLDGGFEAARKFLLRLLGPLIEEISL 133
|
Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing. Length = 133 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-07
Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 10/114 (8%)
Query: 713 LLKYQHTEDF-RAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQE 771
L+++ EDF AIIFV A L + AE + SA+L G N Q +R ++
Sbjct: 236 LVRFLEAEDFDAAIIFVRTKNATLEV----AEALERNGYNSAALNGDMN-QALR----EQ 286
Query: 772 TIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPG 825
T+ + +DGR+ +L+AT VA GLD+ + ++V+ +D+ +Y+ GR + G
Sbjct: 287 TLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAG 340
|
Length = 629 |
| >gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 1e-06
Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 13/140 (9%)
Query: 705 KVQSLIKILLKYQHTEDFR--AIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQ 762
K Q L IL QH F+ A++FV + A +L + L K+ S+ G + +
Sbjct: 352 KKQKLFDILKSKQH---FKPPAVVFVSSRLGADLLANAITVVTGL---KALSIHGEKSMK 405
Query: 763 EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRAR 822
E R E + F G V ++VAT V G+D+ + VI FD+ T+ YI GRA
Sbjct: 406 ERR-----EVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRAS 460
Query: 823 KPGSDYILMIERGNLSHATF 842
+ G ++ F
Sbjct: 461 RMGEKGTAIVFVNEEDRNLF 480
|
Length = 518 |
| >gnl|CDD|215670 pfam00035, dsrm, Double-stranded RNA binding motif | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-06
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 1855 RQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVN--TTDKGWTDECVGEPMPSVK 1912
+ L ++C ++ P Y V E GP H+ FT V VN G S K
Sbjct: 2 KSLLQELCQKKGPKPP-YEYVEEEGPPHSPTFTVTVTVNGKKYGTGTG--------SSKK 52
Query: 1913 KAKDSAAVLLLELL 1926
+AK AA L+ L
Sbjct: 53 EAKQLAAEKALQKL 66
|
Sequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen, which is involved in localisation of at least five different mRNAs in the early Drosophila embryo. Also by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA. Length = 66 |
| >gnl|CDD|218292 pfam04851, ResIII, Type III restriction enzyme, res subunit | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-06
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 8/68 (11%)
Query: 305 RPYQLDVLEQ-AKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPL 363
RPYQ + +E+ +KK + + TG+GKTL A LI + ++ +F+VP+ L
Sbjct: 5 RPYQEEAIERLLEKKRGLIVMATGSGKTLTAAALIARLAKGKKK------VLFVVPRKDL 58
Query: 364 VYQQAEVI 371
+ QA VI
Sbjct: 59 LE-QALVI 65
|
Length = 100 |
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 3e-06
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 19/122 (15%)
Query: 710 IKILLKYQHTEDFRAIIFVERVVAALVLPKVFAEL-----PSLSFVKSASLIGHNNSQEM 764
+K+LL+ + + +IFVE A L K EL P+L I + QE
Sbjct: 366 LKMLLQRIMRDGDKILIFVETKKGADFLTK---ELRLDGWPALC-------IHGDKKQEE 415
Query: 765 RTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKP 824
RT+ + E F+ G+ +++AT VA GLD++ VI FD + Y+ GR +
Sbjct: 416 RTWVLNE----FKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRA 471
Query: 825 GS 826
G+
Sbjct: 472 GA 473
|
Length = 545 |
| >gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 5e-06
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 1861 ICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAV 1920
+ + +P YR V+E GPAH K FT V V + G G S K+A+ +AA
Sbjct: 170 LLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELG---TGKG---RSKKEAEQAAAE 223
Query: 1921 LLLELLNKWYS 1931
L+ L
Sbjct: 224 QALKKLGVKEP 234
|
Length = 235 |
| >gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 2e-05
Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 1864 RRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLL 1923
R P+P Y V+E GPAH K FT V VN K E G S K+A+ +AA L
Sbjct: 170 GRGLPLPEYELVKEEGPAHDKEFTVEVTVN--GKELG-EGTG---SSKKEAEQAAAKQAL 223
Query: 1924 ELLNK 1928
+ L +
Sbjct: 224 KKLKE 228
|
Length = 229 |
| >gnl|CDD|171444 PRK12371, PRK12371, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 1363 RRVESMLLAIQLKDKINYPVPASKILE-ALTAASCQ--ETFCYERAELLGDAYLKWVVSR 1419
+ V + A L+++ + + LE ALT +S + + YER E LGD L V+
Sbjct: 4 KMVLAAATASILEERTGHRFANKERLERALTHSSARASKQGNYERLEFLGDRVLGLCVAE 63
Query: 1420 FLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQA 1461
LF +P EG+L+ Q+V+ A GL I+
Sbjct: 64 MLFEAFPDASEGELSVRLNQLVNAETCAAIADEIGLHDLIRT 105
|
Length = 235 |
| >gnl|CDD|238007 cd00048, DSRM, Double-stranded RNA binding motif | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-05
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 1766 HPVRELQERCQQQA-EGLEYK-ASRSGNLA----TVEVYIDGVQVGVAQNPQKKMAQKLA 1819
+P LQE Q++ EY+ G TVEV + G G + KK A++ A
Sbjct: 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNA 60
Query: 1820 ARNALAVL 1827
A AL L
Sbjct: 61 AEAALRKL 68
|
Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases. Length = 68 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 2e-05
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 12/116 (10%)
Query: 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEM 764
K+ ++ +LLK H + +IF V A + K+F I +E
Sbjct: 269 KIAAVRGLLLK--HARGDKTLIFASDVEHAYEIAKLFLAPGI------VEAITGETPKEE 320
Query: 765 RTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGR 820
R + + +FR G + +LV V +EG+DI +V+I + +IQ GR
Sbjct: 321 R----EAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGR 372
|
Length = 442 |
| >gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 16/68 (23%)
Query: 1864 RRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPM-----PSVKKAKDSA 1918
R P+P YR ++E GP H K FT V VN GEP S K+A+ +A
Sbjct: 164 ARGKPLPEYRLIKEEGPDHDKEFTVEVSVN-----------GEPYGEGKGKSKKEAEQNA 212
Query: 1919 AVLLLELL 1926
A LE L
Sbjct: 213 AKAALEKL 220
|
This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family [Transcription, RNA processing]. Length = 220 |
| >gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 2e-04
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 752 SASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTV 811
++ I N SQ RT +A F+ G + +LVAT +A GLDI + V+ ++L
Sbjct: 271 RSAAIHGNKSQGART----RALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVP 326
Query: 812 LAYIQSRGR 820
Y+ GR
Sbjct: 327 EDYVHRIGR 335
|
Length = 456 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 4e-04
Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 23/149 (15%)
Query: 742 AELPSLSFVKSASLIGHNNSQEMRTF-------QMQETIAKFRDGRVTLLVATSVAEEGL 794
EL LS + G + T+ + + A+F++G + ++AT+ E G+
Sbjct: 319 VELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGI 378
Query: 795 DIRQCNVVIRFDLAK----TVLAYIQSRGRA-RKPGSDYILMIERGN------LSHATFL 843
DI + VI +VL++ Q GRA R+ +L++ R + L H L
Sbjct: 379 DIGSLDAVI---AYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEEL 435
Query: 844 RNARN-SEETLRKEAIERTDLS-HLKDTS 870
E++R + L HL
Sbjct: 436 LETGFGPVESVRVDDNNEYLLDGHLLCAD 464
|
Length = 851 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 0.001
Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 21/131 (16%)
Query: 310 DVLEQAKKKNTIAFLETGAGKTLIAVL-LIRSICNDLQRQNKKMLAVFLVPKVPLVYQQA 368
DV+ QA+ TG+GKT ++ ++ + D + A+ L P L Q A
Sbjct: 38 DVIGQAQ---------TGSGKTAAFLIPILEKL--DPSPKKDGPQALILAPTRELALQIA 86
Query: 369 EVIR---EQTGYVVGHYCGEMGQDFWDAQRWQREFDTK-QVLVMTAQILLNILRHSIIKM 424
EV R + T V G G Q R+ ++V T LL++L + +
Sbjct: 87 EVARKLGKHTNLKVVVIYG--GTSIDK-Q--IRKLKRGPHIVVATPGRLLDLLERGKLDL 141
Query: 425 EAINLLILDEC 435
+ L+LDE
Sbjct: 142 SKVKYLVLDEA 152
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.002
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 1373 QLKDKINYPVPASKIL-EALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEG 1431
QL+ ++ Y +++L +ALT S T ER E LGD+ L V+ LF ++ + EG
Sbjct: 5 QLESRLRYEFRNAELLRQALTHRSHSATH-NERLEFLGDSVLNCAVAALLFQRFGKLDEG 63
Query: 1432 QLTRMRQQMVSNLVLYQYA----LSKGLQ 1456
L+R+R +V LY+ A +S+GL+
Sbjct: 64 DLSRVRANLVKQQSLYEIAQALNISEGLR 92
|
Length = 413 |
| >gnl|CDD|173181 PRK14718, PRK14718, ribonuclease III; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (100), Expect = 0.002
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 1373 QLKDKINYPVPASKIL-EALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEG 1431
QL+ ++ Y +++L +ALT S T ER E LGD+ L V+ LF ++ + EG
Sbjct: 5 QLESRLRYEFRNAELLRQALTHRSHSATH-NERLEFLGDSVLNCAVAALLFQRFGKLDEG 63
Query: 1432 QLTRMRQQMVSNLVLYQYA----LSKGLQ 1456
L+R+R +V LY+ A +S GL+
Sbjct: 64 DLSRVRANLVKQQSLYEIAQALNISDGLR 92
|
Length = 467 |
| >gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 0.002
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 771 ETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLA 808
+ + +F + ++LVAT VA GLDI+ VI ++LA
Sbjct: 283 QVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELA 320
|
Length = 460 |
| >gnl|CDD|239212 cd02846, PAZ_argonaute_like, PAZ domain, argonaute_like subfamily | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 34/109 (31%)
Query: 1240 VTAAHSG---KRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQ 1296
V H G +++ ++ + E ++ +F K+G + S ADY+K+KY + L +
Sbjct: 37 VEVTHRGNTNRKYKIKGLSAEPASQQTFELKDGE----KEISVADYFKEKYNIRLKYPNL 92
Query: 1297 PLIRGRGVSYCKNLLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIH 1345
P ++ K +LP ELC I
Sbjct: 93 PCLQ------VGR---------------------KGKPNYLPMELCNIV 114
|
Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. Length = 114 |
| >gnl|CDD|234702 PRK00254, PRK00254, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.003
Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 16/139 (11%)
Query: 302 EQARPYQLDVLEQA--KKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP 359
E+ P Q + L+ + KN + + T +GKTL+A + + N L R+ K AV+LVP
Sbjct: 22 EELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEI---VMVNKLLREGGK--AVYLVP 76
Query: 360 KVPLVYQQAEVIR--EQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNIL 417
L ++ + E+ G V G D+ W ++D +++ TA+ ++L
Sbjct: 77 LKALAEEKYREFKDWEKLGLRVAMTTG----DYDSTDEWLGKYD---IIIATAEKFDSLL 129
Query: 418 RHSIIKMEAINLLILDECH 436
RH ++ + L++ DE H
Sbjct: 130 RHGSSWIKDVKLVVADEIH 148
|
Length = 720 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1931 | |||
| KOG0701 | 1606 | consensus dsRNA-specific nuclease Dicer and relate | 100.0 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 100.0 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 100.0 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG1817 | 533 | consensus Ribonuclease [RNA processing and modific | 100.0 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 100.0 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 100.0 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| PRK14718 | 467 | ribonuclease III; Provisional | 100.0 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 100.0 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 100.0 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| COG0571 | 235 | Rnc dsRNA-specific ribonuclease [Transcription] | 100.0 | |
| KOG0701 | 1606 | consensus dsRNA-specific nuclease Dicer and relate | 100.0 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK12371 | 235 | ribonuclease III; Reviewed | 100.0 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 100.0 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK12372 | 413 | ribonuclease III; Reviewed | 100.0 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 100.0 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 100.0 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| PTZ00424 | 401 | helicase 45; Provisional | 100.0 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK00102 | 229 | rnc ribonuclease III; Reviewed | 100.0 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 100.0 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 100.0 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 100.0 | |
| TIGR02191 | 220 | RNaseIII ribonuclease III, bacterial. This family | 100.0 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 100.0 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 100.0 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 100.0 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 100.0 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 100.0 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 100.0 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 100.0 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 100.0 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 100.0 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 100.0 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 100.0 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 100.0 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 100.0 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.98 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.97 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.97 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 99.97 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.97 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.97 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 99.97 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 99.97 | |
| PRK14718 | 467 | ribonuclease III; Provisional | 99.97 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.96 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.96 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 99.96 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.96 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 99.95 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.95 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.95 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 99.95 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.95 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.95 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.94 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 99.94 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 99.94 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 99.94 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.94 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.94 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.94 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.94 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.94 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 99.93 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 99.93 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 99.93 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.93 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 99.93 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.92 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 99.92 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.92 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.91 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 99.9 | |
| PF14622 | 128 | Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_ | 99.9 | |
| PF03368 | 90 | Dicer_dimer: Dicer dimerisation domain; InterPro: | 99.89 | |
| PRK12371 | 235 | ribonuclease III; Reviewed | 99.89 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 99.89 | |
| COG0571 | 235 | Rnc dsRNA-specific ribonuclease [Transcription] | 99.89 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 99.89 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.89 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 99.89 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 99.89 | |
| PRK12372 | 413 | ribonuclease III; Reviewed | 99.89 | |
| KOG3732 | 339 | consensus Staufen and related double-stranded-RNA- | 99.89 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 99.89 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.88 | |
| KOG0388 | 1185 | consensus SNF2 family DNA-dependent ATPase [Replic | 99.87 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 99.86 | |
| smart00535 | 129 | RIBOc Ribonuclease III family. | 99.86 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 99.86 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 99.85 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.85 | |
| cd00593 | 133 | RIBOc RIBOc. Ribonuclease III C terminal domain. T | 99.85 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.84 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.84 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 99.83 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.82 | |
| PRK00102 | 229 | rnc ribonuclease III; Reviewed | 99.82 | |
| smart00535 | 129 | RIBOc Ribonuclease III family. | 99.82 | |
| PF00636 | 114 | Ribonuclease_3: Ribonuclease III domain; InterPro: | 99.82 | |
| PF14622 | 128 | Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_ | 99.82 | |
| cd00593 | 133 | RIBOc RIBOc. Ribonuclease III C terminal domain. T | 99.82 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 99.81 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.81 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 99.8 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 99.8 | |
| TIGR02191 | 220 | RNaseIII ribonuclease III, bacterial. This family | 99.8 | |
| KOG1817 | 533 | consensus Ribonuclease [RNA processing and modific | 99.8 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.8 | |
| PF00636 | 114 | Ribonuclease_3: Ribonuclease III domain; InterPro: | 99.79 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.78 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.78 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.78 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 99.74 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.74 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.73 | |
| cd02844 | 135 | PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF ( | 99.71 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.71 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 99.71 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 99.7 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 99.67 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.66 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 99.65 | |
| KOG1015 | 1567 | consensus Transcription regulator XNP/ATRX, DEAD-b | 99.64 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.64 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 99.62 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.62 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 99.61 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.59 | |
| cd02843 | 122 | PAZ_dicer_like PAZ domain, dicer_like subfamily. D | 99.59 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 99.57 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 99.55 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 99.55 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 99.55 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.54 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 99.54 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.52 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.51 | |
| KOG3769 | 333 | consensus Ribonuclease III domain proteins [Transl | 99.51 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.51 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.51 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.49 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 99.43 | |
| PF14709 | 80 | DND1_DSRM: double strand RNA binding domain from D | 99.37 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 99.36 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 99.32 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 99.3 | |
| KOG3732 | 339 | consensus Staufen and related double-stranded-RNA- | 99.27 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.27 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 99.26 | |
| KOG1016 | 1387 | consensus Predicted DNA helicase, DEAD-box superfa | 99.26 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 99.25 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 99.24 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 99.24 | |
| cd00048 | 68 | DSRM Double-stranded RNA binding motif. Binding is | 99.21 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.2 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 99.18 | |
| cd02845 | 117 | PAZ_piwi_like PAZ domain, Piwi_like subfamily. In | 99.17 | |
| PHA02701 | 183 | ORF020 dsRNA-binding PKR inhibitor; Provisional | 99.17 | |
| smart00358 | 67 | DSRM Double-stranded RNA binding motif. | 99.14 | |
| PHA03103 | 183 | double-strand RNA-binding protein; Provisional | 99.08 | |
| PF00035 | 67 | dsrm: Double-stranded RNA binding motif; InterPro: | 99.04 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 99.04 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 99.0 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 98.96 | |
| PF02170 | 135 | PAZ: PAZ domain; InterPro: IPR003100 This domain i | 98.92 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 98.91 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 98.91 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 98.89 | |
| KOG0925 | 699 | consensus mRNA splicing factor ATP-dependent RNA h | 98.81 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 98.8 | |
| PHA02701 | 183 | ORF020 dsRNA-binding PKR inhibitor; Provisional | 98.76 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 98.76 | |
| KOG1042 | 845 | consensus Germ-line stem cell division protein Hiw | 98.74 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 98.71 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 98.71 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 98.71 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 98.68 | |
| PHA03103 | 183 | double-strand RNA-binding protein; Provisional | 98.67 | |
| smart00358 | 67 | DSRM Double-stranded RNA binding motif. | 98.66 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 98.66 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 98.65 | |
| cd00048 | 68 | DSRM Double-stranded RNA binding motif. Binding is | 98.61 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 98.57 | |
| PF00035 | 67 | dsrm: Double-stranded RNA binding motif; InterPro: | 98.55 | |
| KOG4334 | 650 | consensus Uncharacterized conserved protein, conta | 98.42 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 98.35 | |
| KOG2777 | 542 | consensus tRNA-specific adenosine deaminase 1 [RNA | 98.32 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 98.26 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 98.17 | |
| cd02825 | 115 | PAZ PAZ domain, named PAZ after the proteins Piwi | 98.13 | |
| KOG3769 | 333 | consensus Ribonuclease III domain proteins [Transl | 97.91 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 97.85 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 97.85 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 97.75 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 97.67 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 97.65 | |
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 97.64 | |
| PF14709 | 80 | DND1_DSRM: double strand RNA binding domain from D | 97.5 | |
| KOG1802 | 935 | consensus RNA helicase nonsense mRNA reducing fact | 97.44 | |
| cd02846 | 114 | PAZ_argonaute_like PAZ domain, argonaute_like subf | 97.21 | |
| KOG2340 | 698 | consensus Uncharacterized conserved protein [Funct | 97.16 | |
| KOG1803 | 649 | consensus DNA helicase [Replication, recombination | 97.15 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 97.11 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 97.1 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 97.07 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 97.02 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 96.98 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 96.96 | |
| COG1939 | 132 | Ribonuclease III family protein [Replication, reco | 96.87 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 96.87 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 96.83 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 96.65 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 96.6 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 96.59 | |
| KOG1132 | 945 | consensus Helicase of the DEAD superfamily [Replic | 96.57 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 96.51 | |
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 96.46 | |
| PLN03202 | 900 | protein argonaute; Provisional | 96.46 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 96.35 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 95.7 | |
| PF03368 | 90 | Dicer_dimer: Dicer dimerisation domain; InterPro: | 95.68 | |
| KOG1131 | 755 | consensus RNA polymerase II transcription initiati | 95.63 | |
| PRK06526 | 254 | transposase; Provisional | 95.39 | |
| PF13871 | 278 | Helicase_C_4: Helicase_C-like | 95.37 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 95.25 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 95.24 | |
| KOG1805 | 1100 | consensus DNA replication helicase [Replication, r | 95.23 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 95.16 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 95.12 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 95.1 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 95.1 | |
| KOG4334 | 650 | consensus Uncharacterized conserved protein, conta | 95.08 | |
| KOG2777 | 542 | consensus tRNA-specific adenosine deaminase 1 [RNA | 94.99 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 94.98 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 94.85 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 94.75 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 94.74 | |
| PRK12377 | 248 | putative replication protein; Provisional | 94.71 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 94.41 | |
| PRK08181 | 269 | transposase; Validated | 94.34 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 94.27 | |
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 94.08 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 93.96 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 93.94 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 93.91 | |
| KOG3792 | 816 | consensus Transcription factor NFAT, subunit NF90 | 93.89 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 93.41 | |
| smart00491 | 142 | HELICc2 helicase superfamily c-terminal domain. | 93.37 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 93.33 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 93.32 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 93.17 | |
| PRK08727 | 233 | hypothetical protein; Validated | 93.16 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 93.15 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 93.1 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 93.0 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 92.96 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 92.69 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 92.61 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 92.54 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 92.37 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 92.18 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 92.05 | |
| PHA02533 | 534 | 17 large terminase protein; Provisional | 91.42 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 91.24 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 91.23 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 91.14 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 91.11 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 91.05 | |
| KOG0442 | 892 | consensus Structure-specific endonuclease ERCC1-XP | 90.86 | |
| PRK08116 | 268 | hypothetical protein; Validated | 90.78 | |
| COG1939 | 132 | Ribonuclease III family protein [Replication, reco | 90.71 | |
| COG3973 | 747 | Superfamily I DNA and RNA helicases [General funct | 90.46 | |
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 90.25 | |
| TIGR02688 | 449 | conserved hypothetical protein TIGR02688. Members | 90.2 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 90.2 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 90.13 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 89.76 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 89.67 | |
| PF05876 | 557 | Terminase_GpA: Phage terminase large subunit (GpA) | 89.32 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 89.3 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 89.26 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 89.15 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 89.11 | |
| TIGR01074 | 664 | rep ATP-dependent DNA helicase Rep. Designed to id | 88.86 | |
| PRK11773 | 721 | uvrD DNA-dependent helicase II; Provisional | 88.85 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 88.79 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 88.75 | |
| PF14617 | 252 | CMS1: U3-containing 90S pre-ribosomal complex subu | 88.7 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 88.68 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 88.63 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 88.57 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 88.52 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 88.33 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 88.32 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 88.24 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 88.12 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 87.98 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 87.61 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 87.43 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 87.42 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 87.25 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 87.21 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 87.16 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 87.12 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 87.11 | |
| KOG1513 | 1300 | consensus Nuclear helicase MOP-3/SNO (DEAD-box sup | 86.55 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 86.54 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 86.48 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 86.45 | |
| PRK14712 | 1623 | conjugal transfer nickase/helicase TraI; Provision | 86.31 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 85.89 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 85.74 | |
| cd00984 | 242 | DnaB_C DnaB helicase C terminal domain. The hexame | 85.55 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 85.55 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 85.49 | |
| PF14954 | 252 | LIX1: Limb expression 1 | 85.32 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 85.29 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 85.19 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 85.17 | |
| PHA03333 | 752 | putative ATPase subunit of terminase; Provisional | 84.9 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 84.5 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 84.31 | |
| PRK12678 | 672 | transcription termination factor Rho; Provisional | 84.23 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 84.21 | |
| PF03354 | 477 | Terminase_1: Phage Terminase ; InterPro: IPR005021 | 84.2 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 84.13 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 83.87 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 83.87 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 83.72 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 83.71 | |
| COG1435 | 201 | Tdk Thymidine kinase [Nucleotide transport and met | 83.69 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 83.61 | |
| TIGR01073 | 726 | pcrA ATP-dependent DNA helicase PcrA. Designed to | 83.59 | |
| PRK13709 | 1747 | conjugal transfer nickase/helicase TraI; Provision | 83.37 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 83.16 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 83.02 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 83.01 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 82.95 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 82.83 | |
| PF08423 | 256 | Rad51: Rad51; InterPro: IPR013632 This domain is f | 82.76 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 82.72 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 82.66 | |
| TIGR02785 | 1232 | addA_Gpos recombination helicase AddA, Firmicutes | 82.45 | |
| PTZ00293 | 211 | thymidine kinase; Provisional | 82.3 | |
| KOG1513 | 1300 | consensus Nuclear helicase MOP-3/SNO (DEAD-box sup | 82.29 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 82.25 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 82.2 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 81.88 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 81.65 | |
| PRK06904 | 472 | replicative DNA helicase; Validated | 81.64 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 81.53 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 81.48 | |
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subun | 81.21 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 81.19 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 81.17 | |
| PF06733 | 174 | DEAD_2: DEAD_2; InterPro: IPR010614 This represent | 81.13 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 80.92 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 80.88 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 80.85 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 80.7 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 80.26 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 80.13 |
| >KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-70 Score=719.33 Aligned_cols=1513 Identities=24% Similarity=0.238 Sum_probs=978.8
Q ss_pred Ccchhhhhccccccc---cccccCcccc--ccccCCCCCcCCcccccccchhHHHhhccCCCCCCCCCCcccCCCCCCCC
Q 000174 18 QSSYWLDACEDILID---EFVNFDTSVV--QDSVDNTSNQDSLSNDFFGGIDHILDSIKNGSGLPNSNGNLLKNGSEDST 92 (1931)
Q Consensus 18 ~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (1931)
.+++||++|++.+|+ ++..|+..-. +.+.+..+ ++||+|||+++|.|.+.+|.+++.+... +.
T Consensus 11 ~~~~~l~~~~~e~~~~~~s~r~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 78 (1606)
T KOG0701|consen 11 TPLKVLEVFPLESRGLSTSKRHKQECTHHHVSILTAIG----ALNLLFGGYLLLSDRVLLVFDECHNLVM--------DA 78 (1606)
T ss_pred cccccccccccccccccchhhhhhhhhhcccchhhhhh----hhhhhcCchhhhhhhhhhcccccccccc--------cc
Confidence 789999999999999 5544554444 22334444 5799999999999999999999998776 21
Q ss_pred CC---CCcccccchhhccCCCCCCcccccccccccccCCcccccCCCCCccccccccccCccccCCCCccccccccCcch
Q 000174 93 GG---ENHQAEGLILLSNNGSDKDGVDRKRKLENCENVNGYLVNGKAGGRLSDHFTKENGVHRDNGNNDHEASRIRDFDS 169 (1931)
Q Consensus 93 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (1931)
.. ...+.+.... .++-|..+.++=+-++++ ....
T Consensus 79 ~~~~~~~~~~~~~~~--------~s~pr~~~~~a~~~~~~~-----------------------------------~~~~ 115 (1606)
T KOG0701|consen 79 HPRRHFMDLSSSGPS--------FSVPRILGLTASLLNDKF-----------------------------------WLEE 115 (1606)
T ss_pred CcchhhhhcccccCC--------CCcchhhhccCCCcCCCc-----------------------------------chhh
Confidence 11 1111111110 122233333333312221 2223
Q ss_pred hhhHhhhhccccccccCccCC-CCCcc-CCCccccccccccCCchhhcccCCCCccccCCCCCCCcccccccccCCCCCC
Q 000174 170 EDRFSKRARVSVCKNESQYSS-RGQYC-SSDKDRVFGRKRLRDLDDIGRRDRDPMRRREHYNGSSRKDVRDKDFRDREPR 247 (1931)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~r~r~~~~~~~~~~~~~r~~~~~g~~~r~~~~~~~~~~~~~r 247 (1931)
...+.+..+..+..+.+...+ ++... .+.+.+--.......|+..+-. -. ..-.- --.++..-.+.+
T Consensus 116 ~~~~~k~~e~~~~~~~~t~~~~v~~~~~t~~~~~vm~~~~~~~~~~~~~~-~~-~~~~~---------~~~~~~~~~~~~ 184 (1606)
T KOG0701|consen 116 LDEDLKKLEYLSESRIETASDLVSLVRYTSNPFEVMVCCLDAEYGPLLIN-KD-KLICV---------FLIPDCIVITFQ 184 (1606)
T ss_pred hhHHHHHHHHHHHhChhhhccceEeeeccCCCeEEeeehhhhhhhhhhcc-cc-ceeEE---------eccCcceeeecc
Confidence 333444444444444333322 22111 1122222233444444432220 00 00000 011234444555
Q ss_pred CccccccCCCCccccccCCccccccccCCCCCCCCccccCCCCcchhhhhcCC--CCCCcHHHHHHHH-----HHhccCE
Q 000174 248 GYWERDRLGSNGMVFRLGSWEADHNRAGKEANGINQECNGKVGKKSEAKEKMP--EEQARPYQLDVLE-----QAKKKNT 320 (1931)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~Q~eai~-----~~l~~n~ 320 (1931)
.+|..+....+........|.....++..........+...... .+.+.. +..-.+.+.+.+. .+..-++
T Consensus 185 ~~~~~~~v~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~e---~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 261 (1606)
T KOG0701|consen 185 KQYTLLKVLFKKGPWCSVKWIAQDVRELPKVIAGNPAELHYCEE---VFSDSELRFLMSIPRLLERLRDSKHEYIHQFEV 261 (1606)
T ss_pred ccchhhhhhcccCcchhhHHHHHHHhhcceeecCCHHHhhhhhh---hcCcHHHHHHHhHHHHHHHhhhcchhhhcccce
Confidence 66666655555555555555554333332221111111111111 100000 0011112222222 2223678
Q ss_pred EEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhhc
Q 000174 321 IAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREF 400 (1931)
Q Consensus 321 Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~ 400 (1931)
+....++-+++++.......+..........--.+|.++.+..+.+..+.++..+...+..++|.+....|+...|...+
T Consensus 262 ~~~~~~~~~~~l~~~~~~~~v~k~~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~ 341 (1606)
T KOG0701|consen 262 LRKYEPHDVFRLIHESVCPLVDKEYLEKIETLSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELEL 341 (1606)
T ss_pred eeeecccccceeehhhcCchhhHHHHHhhhhhhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHh
Confidence 88889999999888654433333222233345589999999999999999999888888889999999999999999999
Q ss_pred CCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchh
Q 000174 401 DTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQV 480 (1931)
Q Consensus 401 ~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~ 480 (1931)
....|+..++.-.++.|.+..+.+..++....+++++....+.|...+..+.+..+.....-+++.|..++..++.....
T Consensus 342 ~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~vq~~~r~~~~~~~~~i~~~t~~~~~~~~~s~~~ 421 (1606)
T KOG0701|consen 342 RQAEVLRRFHFHELNLLIATSVLEEGVDVPKCNLVVLFDAPTYYRSYVQKKGRARAADSYLVILGETLSAVSLKNPSYAY 421 (1606)
T ss_pred hhHHHHHHHhhhhhhHHHHHHHHHhhcchhhhhhheeccCcchHHHHHHhhcccccchhhHHHHHhhhhhhhhcChhHhH
Confidence 99999999999999999988888999999999999999998899999999998876666677889988877655433344
Q ss_pred HHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 000174 481 DCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARD 560 (1931)
Q Consensus 481 ~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~ 560 (1931)
........|....++.+..+..+.++..+++.+...++.++.+..+..+...++.......+....+.++..++++...+
T Consensus 422 ~~~i~~~~l~~~~~~~v~~~~~~~e~~~~~~~~~~v~~~~~~p~~~~~~~~~~~l~~~~~~d~~~~~~gk~~~~~~~~~~ 501 (1606)
T KOG0701|consen 422 TEQIPRPQLFLRLDANVNKYCARAELLKHVPFLSTVVLPVNSPLKMCIVGLCLKLHKIGELDDCLHPKGKEPKACLEEVD 501 (1606)
T ss_pred HhhcccchhhcccccchHHHHHHHHhccCCCcceeEEEecCchHHHHHHHhHHHHHHhhhhhhhhcccccchHHhhhhhc
Confidence 44445566666777777777778888888999999999888887777777666666666666667777888888888888
Q ss_pred chhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 000174 561 AGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSL 640 (1931)
Q Consensus 561 ~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~ 640 (1931)
....++....+.............+....+.+..+....++||....+...+......+. +.+....+...|+......
T Consensus 502 ~~~~ee~~~~~~~~~~~s~~~~~~~k~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~e~~-n~~~r~~~~~~~~~~~~~~ 580 (1606)
T KOG0701|consen 502 TEEEEEVLQGFEPRPGSSKRRQQYLKHIARERNDSVPKADQPCYLYVIGLELTMPLPEER-NFERRKLYPPEDLTYCFGI 580 (1606)
T ss_pred cccchhhccccCCCCCcccccccccchhHHHhcccccCCCCceeeeeeccceecCCchhc-ccccccccCchhhhhhhcc
Confidence 888777777776666666666666777777888888899999997777655555444433 2222222222333333333
Q ss_pred hhhhhhhccccccccccccccc-ccccCCccccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCC
Q 000174 641 LQCELVEGAVSKKDAKVVDSEN-GFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHT 719 (1931)
Q Consensus 641 l~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~ 719 (1931)
+.+...............+... .........+......+......+..+++++..........++...|+..|.-+...
T Consensus 581 l~~~~i~~~~~~~~a~~sG~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~~~~~~~~~~~~~l~~~llp~~~~ 660 (1606)
T KOG0701|consen 581 LTAKLIPKIPHFPVATRSGEVKVSLLLAFSEALVKSEQLDEIQEFLNYIFTEVLRLAKINLEFDPKTAELIETLLPLNVL 660 (1606)
T ss_pred cchhhhcccccccceeccCchhHHHHHhhhhhhcchhhccCcchhcccchhhhhhhhccccccCCchhhHHHHhcccccc
Confidence 3222222111111100000000 000000000111111122223334455566655566677888999999999877667
Q ss_pred CCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCC
Q 000174 720 EDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQC 799 (1931)
Q Consensus 720 ~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~ 799 (1931)
.+.++++|+..--++-++...+-.++....++...+.+.....++....|......|+.+++..+++|+....|+|+.-|
T Consensus 661 ~~~~~~~i~~k~l~~iv~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~rn~~~~~~~~~~v~~~~~pss~~~g~~~~~~ 740 (1606)
T KOG0701|consen 661 ADKRAIIIVRKFLEAIVAPSDLMPIPSKDEVRKAKYFDGEDSQDAVGMYRNDDQPQFYVAEVLPLLAPSSLFPGLDYETF 740 (1606)
T ss_pred cccchhhhHHHHHHHHhCcccccCCCChhhhhhhhhcccccchhhhhhhhcccccceeeeeeeeeccchhcCCCcchhee
Confidence 78899999988777766666555555445566555555555556666688889999999999999999999999999999
Q ss_pred CEEEEcCCCCCHHHHHHhhccCCCCCCcEEEEEecCChhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCC
Q 000174 800 NVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAVP 879 (1931)
Q Consensus 800 ~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ivlv~~~~~~~~~~l~~~~~~e~~l~~~~i~r~~l~~~~~~~~~~~~~~~~ 879 (1931)
+.|+++|.-.+...++|.+||++-.++.+.++++.++......+.......+.++++.+++..+.+..+.......+..|
T Consensus 741 ~~v~~~~~~~~i~~~~q~~~~~~~~~s~l~~~~~r~~~~~~~~l~~~s~~~e~~~~es~~~~~~~h~~~~s~~~~~~~~p 820 (1606)
T KOG0701|consen 741 NEVYRFKYALTITSLNQSLLDVDHTSSRLNLLVPRGDNQKGSALPNSSSETERLKDESLEHSLIIHPALASLWRRAVCLP 820 (1606)
T ss_pred eeeeeccccchhhhccccccccccchhhhcccCchhhccccceeecccchhhhhhHHHhhccCCCCcCcchhhhhhccCc
Confidence 99999999999999999999999999999999999887777777666667778888888877776665555444455678
Q ss_pred CccceeCCCCcEEcccchHHHHHHHhhcCCCCCCCccCceEEEEecCCCCCCceEEEEEEcCCCCCCCcccCCCCCCHHH
Q 000174 880 GTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFEKLEGPVCSSMRL 959 (1931)
Q Consensus 880 ~~~y~v~~tgA~lt~~~Ai~ll~~yC~~Lp~d~~~~~~P~~~~~~~~~~~~~~~~~~~v~LP~~~p~~~~~g~~~~sk~~ 959 (1931)
..+|.++.||+.++...|+.+|.+||+.++++.|...++ ..+.+...|.|.+.+|..+|++.+.|....+.+.
T Consensus 821 ~~v~~v~~tg~~~s~~ta~~li~~~~~~i~~~~f~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 893 (1606)
T KOG0701|consen 821 EILYRVLLTGALVSLSTAVDLIPHDFSSILSKSFEKEAS-------KSDKNKDEYSCDLALPKENPVKQVLGKANQLDKV 893 (1606)
T ss_pred chheeeccccceeeeecccchhhhhhhhccchhhccccc-------cCCCCccccceeecccCCCchhhhhchhhhhhHH
Confidence 888999999999999999999999998766665544433 3344567899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccccccCCcCCCCCCCCccccccccccccccccccccccCCCCCCCCcc
Q 000174 960 AQQAVCLAACKKLHEMGAFTDMLLPDKGSGEQQEKVDQNDEGEPLPGTARHREFYPEGVADILQGEWILSGRDGCTGSKL 1039 (1931)
Q Consensus 960 Akr~AAf~Ac~~L~~~G~ldd~L~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 1039 (1931)
++++++|++|+.||++|.++|++.|...+................| +.+
T Consensus 894 ~q~av~l~~~~~~~~~~~~~d~~~~n~~~~~~~~~~~~~i~~a~~p------~~~------------------------- 942 (1606)
T KOG0701|consen 894 NQQAVELQECIQLHEVGALDDHLVFNKGVADQVLAKRESISLATRP------ELV------------------------- 942 (1606)
T ss_pred HhhhhhhhhhhhhhcccccccccccCccccchhhhhccccccccCc------ccc-------------------------
Confidence 9999999999999999999999999775542211100000000000 000
Q ss_pred eeEEEEEeeecCCCCCCCCccccccceeEeecccchHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCceEEEEecccCC
Q 000174 1040 FHLFMYTVKCVNNGISKDPFLTQVSDFAVLFSSELDAELASLKNFHVRLMSIVLDVDVEPYTTPWDPAKAYLFVPVVSDK 1119 (1931)
Q Consensus 1040 ~~~y~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~l~~f~~~~~~~v~~~~~~~~~~~~~~~~~yl~~P~~~~~ 1119 (1931)
+++.+..+.+. | +++.-+. +..... .+..+ +.|
T Consensus 943 -----------------~~~~~~~~~~s-----------------~--~~~n~l~----~~~~~~-~~~~s-~~~----- 975 (1606)
T KOG0701|consen 943 -----------------SPFIPEPPTTS-----------------H--LISNRLS----PSSPSN-SDLNS-LLP----- 975 (1606)
T ss_pred -----------------cccccCCchhh-----------------h--hhhhhcC----ccCCCC-CCccc-ccc-----
Confidence 00000000000 0 1111110 100000 00000 000
Q ss_pred CCCCCCccchhhHhhhhccCCCCCccccCCCCcccCccccccCCCcccccccccccccccCccCCCCcccccccchhhhh
Q 000174 1120 SVDPMNELDWDLVEKITKTDAWTNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAIAQFDVV 1199 (1931)
Q Consensus 1120 ~~~~~~~idw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1199 (1931)
...+||+.++.+
T Consensus 976 ----~~~~~~E~~e~i---------------------------------------------------------------- 987 (1606)
T KOG0701|consen 976 ----NKRSDWEAVEKI---------------------------------------------------------------- 987 (1606)
T ss_pred ----cccccccccccc----------------------------------------------------------------
Confidence 011222211100
Q ss_pred hccCCCCchhhhhhcccCCCccccccccccCCccccCCcEEEcccCCCeEEEEeeccCCCCCCCCCCCCCCCCCCccccH
Q 000174 1200 KASGLVPDREAMQIHNADMPTGKLMMADSCANAGDLEGRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSY 1279 (1931)
Q Consensus 1200 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~vv~~~~~~~~y~v~~v~~dltp~s~fp~~~g~~~~~~~~t~ 1279 (1931)
.++.
T Consensus 988 ----------------------------------------------------------~n~~------------------ 991 (1606)
T KOG0701|consen 988 ----------------------------------------------------------LNFR------------------ 991 (1606)
T ss_pred ----------------------------------------------------------cccc------------------
Confidence 0000
Q ss_pred HHHHHhhcCccccCCCCceEEeeccccccccCCCccccccccccccccccccceEEEcCCcccccccCChHHHHHhhchh
Q 000174 1280 ADYYKQKYGVELIFKKQPLIRGRGVSYCKNLLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHPLPGSLVRGAQRLP 1359 (1931)
Q Consensus 1280 ~~yy~~k~~~~l~~~~QPLL~~~~~~~~~n~l~~~~~~~~~~~~~~~~~~~k~~~~~L~Pelc~v~~lp~~~~~~~~~lP 1359 (1931)
|.+. .+ ...+.+.
T Consensus 992 -------~~Fs--------------------------~~-------------~~~i~~~--------------------- 1004 (1606)
T KOG0701|consen 992 -------YVFS--------------------------IS-------------LASIALS--------------------- 1004 (1606)
T ss_pred -------eecc--------------------------cc-------------ccccccc---------------------
Confidence 0000 00 0001110
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhccccCCCCCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhh
Q 000174 1360 SIMRRVESMLLAIQLKDKINYPVPASKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQ 1439 (1931)
Q Consensus 1360 si~~rl~~~l~a~~l~~~l~~~~~~~~ll~AlT~~s~~~~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~ 1439 (1931)
..+||||||+++|.+.++|||||+||||+||++++.+||.+||..+||+|+.+|+.
T Consensus 1005 ------------------------~s~LLEAlT~~~~~~s~s~Erle~Lgds~Lk~avsr~l~L~ypd~~Egqls~lr~~ 1060 (1606)
T KOG0701|consen 1005 ------------------------TSLLLEALTTSSCQDSFSLERLELLGDSLLKLAVSRHLFLTYPDLDEGQLSRLRDV 1060 (1606)
T ss_pred ------------------------hhHHHHHhhcCccccchhHHHHHhhHHHHHHHHHHHHHHHhCCcccchhHHHHHHh
Confidence 57789999999999999999999999999999999999999999999999999999
Q ss_pred hhccHHHHHHHHHcCCccceeccccCCCCccCCCCCCcccCCCcCCCCcccccc-chhhhcccCCCcCCCCcCccccccC
Q 000174 1440 MVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQE-KSVAEDKLGTDKNYNEYEDDDMEDG 1518 (1931)
Q Consensus 1440 lVsN~~L~~~a~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 1518 (1931)
+++|.+|+++|+..||++|++.+.|.|+.|..|+....+..++++...+++... .+..+ ...+.+....++++
T Consensus 1061 ~~~~~nl~~la~~~gl~~~~~~~~fep~~~~~p~~~~~~~~~~k~~~~~~~~~~~~e~~e------~~~df~e~~~~~~~ 1134 (1606)
T KOG0701|consen 1061 NVSNDNLARLAVKKGLYSYLRHEGFEPSRWWVPGQLDVNNVDCKDLSGDQNYILYKELDE------KIKDFQEAMEKEDG 1134 (1606)
T ss_pred cccccchhhhhhcccchhhcccccccccccccccccccccccccccccccccccccchhh------hhhHHHHhhhccCC
Confidence 999999999999999999999999999765555556666666655433322211 01000 01111122222223
Q ss_pred cccCCCCCccccccchhhhHHHHHhhheeeccCHHHHH-----HHHhHhhccccCCCCcCCCCCCCCCCCccccchhhHH
Q 000174 1519 ELEGDSSSYRVLSSKTLADVVEALIGVYYVEGGKDAAN-----HLMKWIGIQVESDPEEVGCPSRPACVPESVLRSVDFH 1593 (1931)
Q Consensus 1519 ~~~~~~~~~~~~~~K~lADvvEALiGA~~l~~G~~~a~-----~~~~~l~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 1593 (1931)
........+.+...|++||++||||||+|+|+|...+. ++|+|.++...++......................+.
T Consensus 1135 ~~~~~~~~~~~~~~ks~adl~eaLlga~~vD~~~~~~~~~~~~~~lk~~~~~~dy~~~e~~~~~~~~~~~s~~~~~~~~~ 1214 (1606)
T KOG0701|consen 1135 DSRSKGGDHDWLAPKSPADLLEALLGAIYVDGGLLETFETIGDSFLKWSITNYDYDTLEPKHAGKLSFRRSKIVKKKNLD 1214 (1606)
T ss_pred cccccccccceecCCCHHHHHHHHHHhhhhhccchhhhhHHHHHHHhhhhhhhhhhcccccchhhhhhhhhhHhhhhhHH
Confidence 22222224678899999999999999999999998887 9999999998776554332222212222222345678
Q ss_pred HHHHHcCC--CcCCHHHHHHHhcCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhC--hHH
Q 000174 1594 ALEDALKI--KFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVN--NEN 1669 (1931)
Q Consensus 1594 ~le~~lgy--~F~~~~LL~~AlTH~S~~~~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~--n~~ 1669 (1931)
.+|..++| +|....|+.+|++|+|+...+..++|||+|+||++||++++++.|+.+....++.+++++++-+| |..
T Consensus 1215 ~ler~l~~~~~~~~~~l~~~~~~~~s~~~~~ld~~erl~~~~d~vld~l~~~~~~~~~~~~~~~~lt~~~~~~v~~l~e~ 1294 (1606)
T KOG0701|consen 1215 RLERELGLKFKFLEAALLVQAFIHCSLRAEGLDATERLEFLGDAVLDKLSDKHPFEVFIRLDGGELTDLREAGVNTLNEN 1294 (1606)
T ss_pred HHHHhhcccchhhhhhcchhhcccccccccccchHHHHHhhHHHHHHHHHHhhhHhhhhcccCcchhhhhhhhhhhhhhc
Confidence 99999999 99999999999999999988888999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHcCchhhhccCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCceeEEee
Q 000174 1670 FARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQV 1749 (1931)
Q Consensus 1670 La~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~~~v~~~ 1749 (1931)
++..++..-|+.+++..+......|..+++.+.......+.........+.|+.+.|+.|+++++.++|.......+|++
T Consensus 1295 ~~~~~v~~~l~~~l~~~s~~~~K~i~d~v~sli~~~~~~~~~~s~l~~~~~~~~l~~i~es~~~~~~~~~~~~l~~~~~~ 1374 (1606)
T KOG0701|consen 1295 DLNVKVPKSLPYNLLDQSSVLEKSIADSVEALIGASLSEGGPSSALLFMDWPPILLDIPESIASPDSIDELRQLLSFGKF 1374 (1606)
T ss_pred ccccccCCcceeeehhhccCccchHHHHHHHhhhhhhhccCCCccccccccccccccccccccccchhHHHHHHHHHHhh
Confidence 99999999999999999998889999999998877766665555555568899999999999999999999888778888
Q ss_pred ecc-----CCCCCCCCCCCCCCChHHHHHHHHhhcCCceeEEecc--CCeEEEEEEECCEEEEEeecCCHHHHHHHHHHH
Q 000174 1750 FQP-----LLDPMVTPETLPMHPVRELQERCQQQAEGLEYKASRS--GNLATVEVYIDGVQVGVAQNPQKKMAQKLAARN 1822 (1931)
Q Consensus 1750 ~~~-----~l~~~i~~~~~~~~P~~~L~e~~~~~~~~~~y~~~~~--g~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~ 1822 (1931)
..+ +.++.+.......+|.....+.|.++...+.+.+..- ...-+..+..++..+.+-.+..+..+... |..
T Consensus 1375 e~~l~y~f~~~~~l~~a~th~s~~~~~~~~C~qrleflgd~vld~~it~hl~~~~~~~sp~~~td~rsa~vnn~~~-a~~ 1453 (1606)
T KOG0701|consen 1375 EEKLNYRFKLKPYLTQATTHASYIYNRITDCYQRLEFLGDAVLDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIF-ASL 1453 (1606)
T ss_pred hcccchhhhhhhcccccccccccccCccchhhhhHHHhHHhhhhhhhhhcccccccccCchhhhhhhhHhhccccc-hhh
Confidence 877 6677777766677888888888887654332222211 00011111111111111111111111111 222
Q ss_pred HHHHHHhhhhhhhhcc-------------------------CCcCC------cccCCCCccchHHHHHHHHHHcCCCCCc
Q 000174 1823 ALAVLKEKETAEAKEK-------------------------GDENG------KKRKNGTQTFTRQTLNDICLRRNWPMPL 1871 (1931)
Q Consensus 1823 AL~~L~~~~~~~~~~~-------------------------~~~~~------~~~~~~~~~n~~~~L~e~~~~~~~~~p~ 1871 (1931)
|++.-.....+...+. +.+.+ ..+..+......+.+++.|..+.|++|-
T Consensus 1454 av~~~~~K~~~~~~~~l~~~I~~~v~~~~q~~~~~~~~~~edievpKa~gdi~esiagai~~dsg~~~~~~~~~~~a~p~ 1533 (1606)
T KOG0701|consen 1454 AVKADLHKFIIAASPGLIHNIDRFVSFQLQSNLDSLFGWEEDIEVPKALGDIFESIAGAIKLDSGNMMEPCIEKFWALPP 1533 (1606)
T ss_pred HHhhcchhHHHhhccccccchHHHHHHHHhhccccCCCchhhcccchhhhhhhhcccceeecCcccccchHhhcCcCCCC
Confidence 2221111111110000 00000 0011222334567899999999999999
Q ss_pred ceeecccCCCCCceeEEEEEEEecCCCcce-----------eEECCCCCCHHHHHHHHHHHHHHHHh
Q 000174 1872 YRCVREGGPAHAKRFTYAVRVNTTDKGWTD-----------ECVGEPMPSVKKAKDSAAVLLLELLN 1927 (1931)
Q Consensus 1872 y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~-----------~g~g~~~~sKK~Ak~~AA~~~l~~L~ 1927 (1931)
+.++.+.++-|...+.+.........+.+. .|.|...+++|.|+..||...|..+.
T Consensus 1534 ~s~~~E~~~~h~~~~~~~~~~k~~d~~~~~~tv~~~~~~~~~~~g~~~~~aK~s~~k~A~~ll~~~~ 1600 (1606)
T KOG0701|consen 1534 RSPIRELLELHPERALFGKCEKVADAGKVRVTVDVFNKEVFAGEGRNYRIAKASAAKAALKLLKKLG 1600 (1606)
T ss_pred ccchhhhccccceeeccchhhhhhhccceEEEEEecccchhhhcchhhhhhhhhHHHHHHHHHHHhh
Confidence 999999999999888776655544333222 34485555555555555555555544
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=474.24 Aligned_cols=475 Identities=25% Similarity=0.360 Sum_probs=317.5
Q ss_pred CCCCCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCC-
Q 000174 299 MPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY- 377 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l- 377 (1931)
-...++|.||......++.+|+++++|||+|||+||++.+...+.+. + +++|||+||++||.|+++.+++.+++
T Consensus 11 p~~ie~R~YQ~~i~a~al~~NtLvvlPTGLGKT~IA~~V~~~~l~~~----~-~kvlfLAPTKPLV~Qh~~~~~~v~~ip 85 (542)
T COG1111 11 PNTIEPRLYQLNIAAKALFKNTLVVLPTGLGKTFIAAMVIANRLRWF----G-GKVLFLAPTKPLVLQHAEFCRKVTGIP 85 (542)
T ss_pred cccccHHHHHHHHHHHHhhcCeEEEecCCccHHHHHHHHHHHHHHhc----C-CeEEEecCCchHHHHHHHHHHHHhCCC
Confidence 34578999999999999999999999999999999999999888763 3 37999999999999999999999977
Q ss_pred --cEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhc
Q 000174 378 --VVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTT 455 (1931)
Q Consensus 378 --~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~ 455 (1931)
.+..++|....+. +...| ...+|+|+|||.+.|.|.+|.+.+.++.+||||||||+.++++|..+++.++...
T Consensus 86 ~~~i~~ltGev~p~~-R~~~w----~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~ 160 (542)
T COG1111 86 EDEIAALTGEVRPEE-REELW----AKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSA 160 (542)
T ss_pred hhheeeecCCCChHH-HHHHH----hhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhc
Confidence 4778999876643 44556 6789999999999999999999999999999999999999999999999888753
Q ss_pred CCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCC--eEEEecchHHHhhhCCCCceeEEEeccchhhhHHHHHH
Q 000174 456 SKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDS--VVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQL 533 (1931)
Q Consensus 456 ~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~--~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i 533 (1931)
..|++|||||||.... ..+.....+|+- ..+...+..++..++..-....+..+.+.....+.+.+
T Consensus 161 ---k~~~ilgLTASPGs~~---------ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l 228 (542)
T COG1111 161 ---KNPLILGLTASPGSDL---------EKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLL 228 (542)
T ss_pred ---cCceEEEEecCCCCCH---------HHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHH
Confidence 4599999999998522 356666666663 23333466788888888777777777665555555555
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhccccc-chhhHHHHhh-hccc-ccc-cch--hhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000174 534 KQMEVAVEEAAQSSSRRSKWQFMGARD-AGAKEELRQV-YGVS-ERT-ESD--GAANLIQKLRAINYALGELGQWCAYKV 607 (1931)
Q Consensus 534 ~~l~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~-~~~~-~r~-~~~--~~~~l~~~~~~~~~~l~~lg~~~a~~~ 607 (1931)
..+.....+.+.... ++.... ...++.+... .... ... ... .+.........+.+++
T Consensus 229 ~~~l~~~Lk~L~~~g------~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~----------- 291 (542)
T COG1111 229 RDALKPRLKPLKELG------VIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHAL----------- 291 (542)
T ss_pred HHHHHHHHHHHHHcC------ceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHH-----------
Confidence 544433332222110 000000 0000100000 0000 000 000 0000000000010100
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCC
Q 000174 608 AQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGE 687 (1931)
Q Consensus 608 ~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e 687 (1931)
.-++. +... .-..|+.++.+.... .+... ...+ +.+.... .
T Consensus 292 -----ellet------qGi~-~~~~Yl~~l~e~~~~---~~sk~--a~~l--------------~~d~~~~--------~ 332 (542)
T COG1111 292 -----ELLET------QGIR-PFYQYLEKLEEEATK---GGSKA--AKSL--------------LADPYFK--------R 332 (542)
T ss_pred -----HHHHh------hChH-HHHHHHHHHHHHhcc---cchHH--HHHH--------------hcChhhH--------H
Confidence 00000 0000 012344333322111 00000 0000 0000000 0
Q ss_pred chhhhhhhcccCCCCCHHHHHHHHHHHHh-cCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCcee-EEEEccCC---Cc
Q 000174 688 HVDVIIGAAVADGKVTPKVQSLIKILLKY-QHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKS-ASLIGHNN---SQ 762 (1931)
Q Consensus 688 ~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~-~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~-~~l~G~~~---~~ 762 (1931)
.+...+. ....+..+||+..+.++|+++ ....+.|+|||++.|+||+.+..+|... +..+ ..+.|+++ +.
T Consensus 333 al~~~~~-~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~----~~~~~~rFiGQa~r~~~~ 407 (542)
T COG1111 333 ALRLLIR-ADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKI----GIKARVRFIGQASREGDK 407 (542)
T ss_pred HHHHHHH-hccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhc----CCcceeEEeecccccccc
Confidence 0000111 123446689999999999987 4567799999999999999999999984 3344 48889653 46
Q ss_pred cccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEEEEecCChhHHHH
Q 000174 763 EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIERGNLSHATF 842 (1931)
Q Consensus 763 ~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ivlv~~~~~~~~~~ 842 (1931)
+|+|++|.+++++||+|++||||||+|+|||||||.||+||+||+-.|+..+|||+|||||.....++++-..+..+..+
T Consensus 408 GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~r~Grv~vLvt~gtrdeay 487 (542)
T COG1111 408 GMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRKRKGRVVVLVTEGTRDEAY 487 (542)
T ss_pred ccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccCCCCeEEEEEecCchHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999997555333333333445555
Q ss_pred HHHHHHHHHHHHHH
Q 000174 843 LRNARNSEETLRKE 856 (1931)
Q Consensus 843 l~~~~~~e~~l~~~ 856 (1931)
.....+.++.|.+.
T Consensus 488 y~~s~rke~~m~e~ 501 (542)
T COG1111 488 YYSSRRKEQKMIES 501 (542)
T ss_pred HHHHHHHHHHHHHH
Confidence 55556666666553
|
|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-46 Score=462.51 Aligned_cols=483 Identities=27% Similarity=0.362 Sum_probs=302.9
Q ss_pred CCCCCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc-CC
Q 000174 299 MPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT-GY 377 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~-~l 377 (1931)
.....+|+||.+.+..++.+|+||++|||+|||+||+..+.+++++. ++.+|||+|||++|+.||.+.+...+ +.
T Consensus 58 p~~~~lR~YQ~eivq~ALgkNtii~lPTG~GKTfIAa~Vm~nh~rw~----p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~ 133 (746)
T KOG0354|consen 58 PTNLELRNYQEELVQPALGKNTIIALPTGSGKTFIAAVIMKNHFEWR----PKGKVVFLAPTRPLVNQQIACFSIYLIPY 133 (746)
T ss_pred cCcccccHHHHHHhHHhhcCCeEEEeecCCCccchHHHHHHHHHhcC----CcceEEEeeCCchHHHHHHHHHhhccCcc
Confidence 44678999999999999999999999999999999999999999875 44789999999999999998887754 55
Q ss_pred cEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhccccc-ccceeEEEEeCCCcccCCCcHHHHHHHHHhhcC
Q 000174 378 VVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIK-MEAINLLILDECHHAVKKHPYSLVMSEFYHTTS 456 (1931)
Q Consensus 378 ~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~-l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~ 456 (1931)
.+....|+.....-+...| ...+|+|+|||+|.+.|.++... ++.+.+||||||||..++|+|..+|+.++....
T Consensus 134 ~~T~~l~~~~~~~~r~~i~----~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~ 209 (746)
T KOG0354|consen 134 SVTGQLGDTVPRSNRGEIV----ASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKN 209 (746)
T ss_pred cceeeccCccCCCchhhhh----cccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhh
Confidence 6666667654433334444 78999999999999999987654 499999999999999999999999998887532
Q ss_pred CCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEe--cchHHHhhhCCCCceeEEEeccchhhhHHHHHHH
Q 000174 457 KEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTI--KDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLK 534 (1931)
Q Consensus 457 ~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~--~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~ 534 (1931)
..+|||||||||. ++...+...+..|...|+...... ....+++++...|.. +.........++...++
T Consensus 210 --~~~qILgLTASpG-----~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~--~~~~~~~~~~~f~~~i~ 280 (746)
T KOG0354|consen 210 --QGNQILGLTASPG-----SKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVD--LSLCERDIEDPFGMIIE 280 (746)
T ss_pred --ccccEEEEecCCC-----ccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCc--HHHhhhhhhhhHHHHHH
Confidence 2369999999998 345667777888887777543322 345666666666654 22222223334444444
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhh-ccccccc-chhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000174 535 QMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVY-GVSERTE-SDGAANLIQKLRAINYALGELGQWCAYKVAQSFL 612 (1931)
Q Consensus 535 ~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~~~~r~~-~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l 612 (1931)
.+...+... ........... ............+ ....... ...+..+.. +.........+.-.+++.....+.
T Consensus 281 p~l~~l~~~--~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~-~~~~ll~~~gir~~~~l~~~~~f~ 355 (746)
T KOG0354|consen 281 PLLQQLQEE--GLIEISDKSTS--YEQWVVQAEKAAAPNGPENQRNCFYALHLRK-YNLALLISDGIRFVDALDYLEDFY 355 (746)
T ss_pred HHHHHHHhc--Ccccccccccc--ccchhhhhhhhhccCCCccchhhHHHHHHHH-HHHHHHhhcchhhHHHHhhhhhhc
Confidence 443333211 00000000000 0000000000000 0000000 000000000 000000000000001111111000
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhh
Q 000174 613 TALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVI 692 (1931)
Q Consensus 613 ~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~ 692 (1931)
....... ......+..++..+... +.++..
T Consensus 356 ~e~~~~k----~~~~~~e~~~~~~~~~~----------------------------m~~~~~------------------ 385 (746)
T KOG0354|consen 356 EEVALKK----YLKLELEARLIRNFTEN----------------------------MNELEH------------------ 385 (746)
T ss_pred cccchhH----HHHHHhcchhhHHHHHH----------------------------HHhhhh------------------
Confidence 0000000 00000000000000000 000000
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHh-cCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCC---ccccHHH
Q 000174 693 IGAAVADGKVTPKVQSLIKILLKY-QHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNS---QEMRTFQ 768 (1931)
Q Consensus 693 i~~~~~~~~~s~Kv~~Li~lL~~~-~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~---~~~~~~~ 768 (1931)
-.......++|+..|.++|.++ ...++.|+||||++|..|..|..+|... ...++++..++|.+.+ .+|++.+
T Consensus 386 --l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~-~~~~ir~~~fiGq~~s~~~~gmtqk~ 462 (746)
T KOG0354|consen 386 --LSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQL-HELGIKAEIFIGQGKSTQSTGMTQKE 462 (746)
T ss_pred --hhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhh-hhcccccceeeeccccccccccCHHH
Confidence 0011225689999999999876 5678899999999999999999999852 1257899999997654 5899999
Q ss_pred HHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCC-CcEEEEEecCChhHHHHHHHHH
Q 000174 769 MQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPG-SDYILMIERGNLSHATFLRNAR 847 (1931)
Q Consensus 769 R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~G-s~~ivlv~~~~~~~~~~l~~~~ 847 (1931)
|+++|++|++|++||||||+|+||||||+.||+||+||...|+..+|||+|| ||+. +++++++. +.. +. ..+...
T Consensus 463 Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~ns~~vll~t-~~~-~~-~~E~~~ 538 (746)
T KOG0354|consen 463 QKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRARNSKCVLLTT-GSE-VI-EFERNN 538 (746)
T ss_pred HHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccccCCeEEEEEc-chh-HH-HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 6654 54555544 433 22 233334
Q ss_pred HHHHHHHHHHHhh
Q 000174 848 NSEETLRKEAIER 860 (1931)
Q Consensus 848 ~~e~~l~~~~i~r 860 (1931)
...+.|++..+..
T Consensus 539 ~~~e~lm~~~i~~ 551 (746)
T KOG0354|consen 539 LAKEKLMNQTISK 551 (746)
T ss_pred HhHHHHHHHHHHH
Confidence 4444555555544
|
|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-47 Score=459.08 Aligned_cols=342 Identities=20% Similarity=0.258 Sum_probs=271.8
Q ss_pred ccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHh---hhcCCCcEEEEEe
Q 000174 283 QECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDL---QRQNKKMLAVFLV 358 (1931)
Q Consensus 283 ~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~---~~~~~~~~vL~Lv 358 (1931)
+...+..+.....+...++..|+|+|..+++.++. +|+|..+.||||||++|++|+..++... ...++.+++|||+
T Consensus 93 f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~ 172 (519)
T KOG0331|consen 93 FQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLA 172 (519)
T ss_pred hhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEc
Confidence 33444444455788899999999999999999999 9999999999999999999988777642 1245578899999
Q ss_pred CChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCC
Q 000174 359 PKVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDEC 435 (1931)
Q Consensus 359 PT~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEa 435 (1931)
|||||+.|+.+++.++. +++..+++|+.... .+...+..+++|+|+||++|.++++.+.+.++++.++|+|||
T Consensus 173 PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~----~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEA 248 (519)
T KOG0331|consen 173 PTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKG----PQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEA 248 (519)
T ss_pred CcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCcc----HHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccH
Confidence 99999999999999875 56789999998753 445556679999999999999999999999999999999999
Q ss_pred CcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCce
Q 000174 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSE 515 (1931)
Q Consensus 436 H~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e 515 (1931)
|+|++ ++|...++.++...+...+ +.|+.|||=.. .+..|.. .++..|..
T Consensus 249 DrMld-mGFe~qI~~Il~~i~~~~r-Qtlm~saTwp~------------~v~~lA~----------------~fl~~~~~ 298 (519)
T KOG0331|consen 249 DRMLD-MGFEPQIRKILSQIPRPDR-QTLMFSATWPK------------EVRQLAE----------------DFLNNPIQ 298 (519)
T ss_pred Hhhhc-cccHHHHHHHHHhcCCCcc-cEEEEeeeccH------------HHHHHHH----------------HHhcCceE
Confidence 99999 6999999999988744333 79999999321 2222222 22222222
Q ss_pred eEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHH
Q 000174 516 VVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYA 595 (1931)
Q Consensus 516 ~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~ 595 (1931)
+.+.... .+
T Consensus 299 i~ig~~~---------~~-------------------------------------------------------------- 307 (519)
T KOG0331|consen 299 INVGNKK---------EL-------------------------------------------------------------- 307 (519)
T ss_pred EEecchh---------hh--------------------------------------------------------------
Confidence 2111000 00
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccc
Q 000174 596 LGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEG 675 (1931)
Q Consensus 596 l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 675 (1931)
.+..
T Consensus 308 -------~a~~--------------------------------------------------------------------- 311 (519)
T KOG0331|consen 308 -------KANH--------------------------------------------------------------------- 311 (519)
T ss_pred -------hhhc---------------------------------------------------------------------
Confidence 0000
Q ss_pred cccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEE
Q 000174 676 ELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASL 755 (1931)
Q Consensus 676 ~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l 755 (1931)
.+.+.+.......|...|.++|..+......|+||||+++.+|+.|+..|+. .++++..|
T Consensus 312 ----------------~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~----~~~~a~~i 371 (519)
T KOG0331|consen 312 ----------------NIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRR----KGWPAVAI 371 (519)
T ss_pred ----------------chhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHh----cCcceeee
Confidence 0000001112346888888999888656778999999999999999999997 57999999
Q ss_pred EccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEE
Q 000174 756 IGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYIL 830 (1931)
Q Consensus 756 ~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~iv 830 (1931)
|| +.+|.+|+.+|+.||+|+++||||||||+||||||+|++|||||+|.+..+||||+|||||+|+++..
T Consensus 372 HG-----d~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A 441 (519)
T KOG0331|consen 372 HG-----DKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTA 441 (519)
T ss_pred cc-----cccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceE
Confidence 99 99999999999999999999999999999999999999999999999999999999999997766333
|
|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-47 Score=425.41 Aligned_cols=355 Identities=23% Similarity=0.282 Sum_probs=280.7
Q ss_pred CCCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe
Q 000174 280 GINQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV 358 (1931)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv 358 (1931)
..++.+.+..+...++.+..++..|+++|++++|.++. +++|+.++||||||.+|++||.+.+.. .+...+++||+
T Consensus 60 ~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~---~p~~~~~lVLt 136 (476)
T KOG0330|consen 60 FKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQ---EPKLFFALVLT 136 (476)
T ss_pred hcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHc---CCCCceEEEec
Confidence 44566667766777999999999999999999999999 999999999999999999999877765 34568899999
Q ss_pred CChhHHHHHHHHHHHH---cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhc-ccccccceeEEEEeC
Q 000174 359 PKVPLVYQQAEVIREQ---TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH-SIIKMEAINLLILDE 434 (1931)
Q Consensus 359 PT~~Lv~Q~~~~l~~~---~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~-~~l~l~~i~lLV~DE 434 (1931)
|||+|+.|+.+.++.+ +|+++.++.|++.. ..+-..+.+.++|+|+||++|.+++.+ +.+++.+++++|+||
T Consensus 137 PtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m----~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDE 212 (476)
T KOG0330|consen 137 PTRELAQQIAEQFEALGSGIGLRVAVLVGGMDM----MLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDE 212 (476)
T ss_pred CcHHHHHHHHHHHHHhccccCeEEEEEecCchH----HHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhch
Confidence 9999999999999986 48999999999874 334455668999999999999999984 678999999999999
Q ss_pred CCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCc
Q 000174 435 CHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPS 514 (1931)
Q Consensus 435 aH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~ 514 (1931)
||++++ +.|...+..|+...+. ..+.+++|||-.. .+.+|.. ..+..|.
T Consensus 213 ADrlLd-~dF~~~ld~ILk~ip~--erqt~LfsATMt~------------kv~kL~r----------------asl~~p~ 261 (476)
T KOG0330|consen 213 ADRLLD-MDFEEELDYILKVIPR--ERQTFLFSATMTK------------KVRKLQR----------------ASLDNPV 261 (476)
T ss_pred HHhhhh-hhhHHHHHHHHHhcCc--cceEEEEEeecch------------hhHHHHh----------------hccCCCe
Confidence 999999 5999999999988774 3789999999542 2333321 1122222
Q ss_pred eeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHH
Q 000174 515 EVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINY 594 (1931)
Q Consensus 515 e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~ 594 (1931)
.+.+. ..+..
T Consensus 262 ~v~~s--------~ky~t-------------------------------------------------------------- 271 (476)
T KOG0330|consen 262 KVAVS--------SKYQT-------------------------------------------------------------- 271 (476)
T ss_pred EEecc--------chhcc--------------------------------------------------------------
Confidence 22110 00000
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccc
Q 000174 595 ALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEE 674 (1931)
Q Consensus 595 ~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 674 (1931)
...+ .+.|+.
T Consensus 272 -v~~l------------------------------kQ~ylf--------------------------------------- 281 (476)
T KOG0330|consen 272 -VDHL------------------------------KQTYLF--------------------------------------- 281 (476)
T ss_pred -hHHh------------------------------hhheEe---------------------------------------
Confidence 0000 001110
Q ss_pred ccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEE
Q 000174 675 GELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSAS 754 (1931)
Q Consensus 675 ~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~ 754 (1931)
-....|...|+.+|.+. .+...||||++..+++.++-+|.. -++.+..
T Consensus 282 -------------------------v~~k~K~~yLV~ll~e~---~g~s~iVF~~t~~tt~~la~~L~~----lg~~a~~ 329 (476)
T KOG0330|consen 282 -------------------------VPGKDKDTYLVYLLNEL---AGNSVIVFCNTCNTTRFLALLLRN----LGFQAIP 329 (476)
T ss_pred -------------------------ccccccchhHHHHHHhh---cCCcEEEEEeccchHHHHHHHHHh----cCcceec
Confidence 01123556678888765 457899999999999999999998 5899999
Q ss_pred EEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE--EEEE
Q 000174 755 LIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY--ILMI 832 (1931)
Q Consensus 755 l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~--ivlv 832 (1931)
+|| .|++..|..++++|++|.++|||||||++||+|+|.|++|||||.|.+..+||||+||++|+|..+ +.++
T Consensus 330 LhG-----qmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlV 404 (476)
T KOG0330|consen 330 LHG-----QMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLV 404 (476)
T ss_pred ccc-----hhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEE
Confidence 999 999999999999999999999999999999999999999999999999999999999999999774 4444
Q ss_pred ecCChhHHHHHHHHHHHHHHHHH
Q 000174 833 ERGNLSHATFLRNARNSEETLRK 855 (1931)
Q Consensus 833 ~~~~~~~~~~l~~~~~~e~~l~~ 855 (1931)
.. ..++.++++|..+.+
T Consensus 405 tq------yDve~~qrIE~~~gk 421 (476)
T KOG0330|consen 405 TQ------YDVELVQRIEHALGK 421 (476)
T ss_pred eh------hhhHHHHHHHHHHhc
Confidence 42 345566666665543
|
|
| >KOG1817 consensus Ribonuclease [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=417.88 Aligned_cols=410 Identities=26% Similarity=0.331 Sum_probs=320.0
Q ss_pred EcCCcccccccCChHHHHHhhchhhHHHHHHHHHHHHHHhhhcCCCCChhHHH-HHhccccCCC----------------
Q 000174 1336 FLPPELCFIHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKDKINYPVPASKIL-EALTAASCQE---------------- 1398 (1931)
Q Consensus 1336 ~L~Pelc~v~~lp~~~~~~~~~lPsi~~rl~~~l~a~~l~~~l~~~~~~~~ll-~AlT~~s~~~---------------- 1398 (1931)
.++.+-....++-.++++-++++|-..|.|-...-..-|++.|||.|.+..+| -||||||...
T Consensus 8 ~~~~~gf~~tg~~~dv~~h~~m~~~~~~hir~~~~l~~~e~~i~y~f~~r~~~~lal~h~s~~~~~Gt~~dh~kns~tnc 87 (533)
T KOG1817|consen 8 ELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQSLDHLEELIGYTFQDRCLLQLALTHPSHKLNYGTNPDHAKNSLTNC 87 (533)
T ss_pred eeccchHHHhCcchHHHHHHHHHHHHhhhhhHHHhHHHHHHHhCeeecchHHHHHHhcCchHHhhCCCCchhhhcccccc
Confidence 34444555678899999999999999999876665677889999999999999 5999998510
Q ss_pred -----------------------------------------CCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHH
Q 000174 1399 -----------------------------------------TFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMR 1437 (1931)
Q Consensus 1399 -----------------------------------------~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R 1437 (1931)
...+||||||||++..+++|.++|..+|...||-|...|
T Consensus 88 g~r~~~yg~~~~~~~~kr~~gin~li~imk~l~~~~~~~s~i~hnErle~lgdavve~~ss~hl~~~~~r~~eggLatyr 167 (533)
T KOG1817|consen 88 GIRQPKYGDRKEHIMTKRKLGINTLINIMKRLGVIQPTHSVIKHNERLEFLGDAVVELLSSNHLYFMFPRLEEGGLATYR 167 (533)
T ss_pred CcCCcccchhHHHHHHHHHhhhhHHHHHHhhccCCCCchhHhHHHHHHHHHhhccHHHHHHHHHHHccccccccchhHHH
Confidence 126899999999999999999999999999999999999
Q ss_pred hhhhccHHHHHHHHHcCCccceeccccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCcccccc
Q 000174 1438 QQMVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMED 1517 (1931)
Q Consensus 1438 ~~lVsN~~L~~~a~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1517 (1931)
..+|.|.+|+.+|+++.+..++.-.. |+...+. .
T Consensus 168 ta~vqnr~la~lakklrkd~fl~yah---------g~dl~~~---------------------------------~---- 201 (533)
T KOG1817|consen 168 TAIVQNRHLAKLAKKLRKDEFLLYAH---------GYDLCFE---------------------------------T---- 201 (533)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhc---------CcchhhH---------------------------------H----
Confidence 99999999999999999999887432 1111100 0
Q ss_pred CcccCCCCCccccccchhhhHHHHHhhheeeccCHHHHHHHHhHhhc--cccCCCCcCCCCCC--CCCCCcc-------c
Q 000174 1518 GELEGDSSSYRVLSSKTLADVVEALIGVYYVEGGKDAANHLMKWIGI--QVESDPEEVGCPSR--PACVPES-------V 1586 (1931)
Q Consensus 1518 ~~~~~~~~~~~~~~~K~lADvvEALiGA~~l~~G~~~a~~~~~~l~i--~~~~~~~~~~~~~~--~~~~p~~-------~ 1586 (1931)
--...+|+||||+|||.|+++|...+...-..... .......+...... ....|.. .
T Consensus 202 ------------E~Kha~an~feavi~a~~l~g~~~~~e~lfs~~~~~~epvlee~w~~~~ehelq~~ep~gDr~~~~~~ 269 (533)
T KOG1817|consen 202 ------------ELKHAMANCFEAVIGAKYLDGGLVVAEKLFSRALFVYEPVLEEEWEHEPEHELQEQEPAGDRVLITKY 269 (533)
T ss_pred ------------HHHHHHHHHHHHHhHHHHHhcchHHHHHHHHHHhhccCchhhccccCCCcCcccccCCCccccccccC
Confidence 01368999999999999999998777655322111 11000000000000 0000100 0
Q ss_pred cchhhHHHHHHHcCCCcCCHHHHHHHhcCCCCCCC--CCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHh
Q 000174 1587 LRSVDFHALEDALKIKFKDRGLLVEAITHASRPSS--GVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAA 1664 (1931)
Q Consensus 1587 ~~~~~~~~le~~lgy~F~~~~LL~~AlTH~S~~~~--~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~l 1664 (1931)
.....+-++|+++|..|.+++||.+|+|-.|.+.+ ...+|||||||||+||++++|++||.+||+..+|.|+.||+.|
T Consensus 270 Ppllp~~~~e~~~g~vF~Hirlla~aft~rs~~~n~Lt~gHNqRLEFLGDSilqlv~T~ily~kFPdhhEGhLSlLRssL 349 (533)
T KOG1817|consen 270 PPLLPLTQFEEIIGIVFIHIRLLARAFTLRSIPFNHLTLGHNQRLEFLGDSILQLVMTEILYRKFPDHHEGHLSLLRSSL 349 (533)
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHhhccCCCchhhhhhhhHHHHHhHHHHHHHHHHHHHHHhCCccccchHHHHHHHH
Confidence 01123568999999999999999999999997632 3469999999999999999999999999999999999999999
Q ss_pred hChHHHHHHHHHcCchhhhccCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCce
Q 000174 1665 VNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTS 1744 (1931)
Q Consensus 1665 v~n~~La~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~~ 1744 (1931)
|||++-+.+|..+|+++++..+..... + .....|.+||+|||+|||+|+|.|..
T Consensus 350 VsNetqakva~~lgf~e~li~n~~~k~-----~-------------------~~lk~K~~ADlfEAfiGaLyvD~~le-- 403 (533)
T KOG1817|consen 350 VSNETQAKVADDLGFHEYLITNFDLKD-----F-------------------QNLKLKDYADLFEAFIGALYVDKGLE-- 403 (533)
T ss_pred hccHHHHHHHHHhCCchhhhhCcchhh-----h-------------------hhhhHHHHHHHHHHHHHHHhhcCCcH--
Confidence 999999999999999999987654311 0 12457999999999999999997755
Q ss_pred eEEeeeccCCCCCCCC---CCCCCCChHHHHHHHHhhcCC------c-eeEEecc-C----CeEEEEEEECCEEEEEeec
Q 000174 1745 VVWQVFQPLLDPMVTP---ETLPMHPVRELQERCQQQAEG------L-EYKASRS-G----NLATVEVYIDGVQVGVAQN 1809 (1931)
Q Consensus 1745 ~v~~~~~~~l~~~i~~---~~~~~~P~~~L~e~~~~~~~~------~-~y~~~~~-g----~~f~v~V~v~g~~~~~g~g 1809 (1931)
.|++|+..++.|.|.. .....+|++.|+.+|...... + -|.+... | +.|+|+|+++|+.+|+|.|
T Consensus 404 ~~~qf~~~l~~Prl~~fi~nq~wndpkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat~~G 483 (533)
T KOG1817|consen 404 YCRQFLRVLFFPRLKEFIRNQDWNDPKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLATGVG 483 (533)
T ss_pred HHHHHHHHHhhHHHHHHHHhhhccCcHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEeeccC
Confidence 5667788888886654 334679999999999875433 2 4555443 3 4699999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHh
Q 000174 1810 PQKKMAQKLAARNALAVLKE 1829 (1931)
Q Consensus 1810 ~skk~Ak~~AA~~AL~~L~~ 1829 (1931)
++.|.|+.+||+.||+.++.
T Consensus 484 ~nik~Ae~rAA~~ALe~~~~ 503 (533)
T KOG1817|consen 484 SNIKQAEMRAAMQALENLKM 503 (533)
T ss_pred chHhHHHHHHHHHHHHHHHh
Confidence 99999999999999999985
|
|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=411.02 Aligned_cols=367 Identities=21% Similarity=0.237 Sum_probs=270.2
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhh------cCCCcE
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQR------QNKKML 353 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~------~~~~~~ 353 (1931)
..++..+......+.+.+.+|..|+|+|..++|..++ +|+|..++||||||++|++|+.-.+..++. .-.++.
T Consensus 245 rnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpy 324 (673)
T KOG0333|consen 245 RNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPY 324 (673)
T ss_pred cChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCce
Confidence 4556666555556889999999999999999999998 999999999999999999999888876652 345688
Q ss_pred EEEEeCChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEE
Q 000174 354 AVFLVPKVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLL 430 (1931)
Q Consensus 354 vL~LvPT~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lL 430 (1931)
++||+||++|+.|+.++-.++. ++++..+.|+.+.+... -++..+++|+|+||++|.+.|.+.++-++++.++
T Consensus 325 aiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~----fqls~gceiviatPgrLid~Lenr~lvl~qctyv 400 (673)
T KOG0333|consen 325 AIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQG----FQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYV 400 (673)
T ss_pred eeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhh----hhhhccceeeecCchHHHHHHHHHHHHhccCceE
Confidence 9999999999999999887764 78999999998754321 2344799999999999999999999999999999
Q ss_pred EEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhC
Q 000174 431 ILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHV 510 (1931)
Q Consensus 431 V~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~ 510 (1931)
|+|||++|.+ ++|......++...|..+ |.|.. +.. ..-..+...+..
T Consensus 401 vldeadrmiD-mgfE~dv~~iL~~mPssn--------~k~~t-de~-------~~~~~~~~~~~~--------------- 448 (673)
T KOG0333|consen 401 VLDEADRMID-MGFEPDVQKILEQMPSSN--------AKPDT-DEK-------EGEERVRKNFSS--------------- 448 (673)
T ss_pred eccchhhhhc-ccccHHHHHHHHhCCccc--------cCCCc-cch-------hhHHHHHhhccc---------------
Confidence 9999999998 689888888887765431 12211 000 000011111110
Q ss_pred CCCceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHH
Q 000174 511 PMPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLR 590 (1931)
Q Consensus 511 ~~p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~ 590 (1931)
.......+.-+..+.+.. ..+
T Consensus 449 --~k~yrqT~mftatm~p~v---erl------------------------------------------------------ 469 (673)
T KOG0333|consen 449 --SKKYRQTVMFTATMPPAV---ERL------------------------------------------------------ 469 (673)
T ss_pred --ccceeEEEEEecCCChHH---HHH------------------------------------------------------
Confidence 000000000000000000 000
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcc
Q 000174 591 AINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTN 670 (1931)
Q Consensus 591 ~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 670 (1931)
.+.|+.
T Consensus 470 ---------------------------------------ar~ylr----------------------------------- 475 (673)
T KOG0333|consen 470 ---------------------------------------ARSYLR----------------------------------- 475 (673)
T ss_pred ---------------------------------------HHHHhh-----------------------------------
Confidence 001111
Q ss_pred ccccccccccccccCC--CchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCC
Q 000174 671 EIEEGELLDSHVVSGG--EHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLS 748 (1931)
Q Consensus 671 ~l~~~~l~~~~~~s~~--e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~ 748 (1931)
++.+++.| ....+.+++.+.....+.|+.+|+++|... -...+|||++++..|+.|++.|.+ .
T Consensus 476 --------~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~---~~ppiIIFvN~kk~~d~lAk~LeK----~ 540 (673)
T KOG0333|consen 476 --------RPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN---FDPPIIIFVNTKKGADALAKILEK----A 540 (673)
T ss_pred --------CCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhC---CCCCEEEEEechhhHHHHHHHHhh----c
Confidence 11111111 011112333444446678999999999875 456899999999999999999998 5
Q ss_pred CceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE
Q 000174 749 FVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY 828 (1931)
Q Consensus 749 ~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ 828 (1931)
++++..+|| +.++.+|+.+|+.||.|..+||||||||+||||||+|.+|||||++++..+|+||+|||||+|+.+
T Consensus 541 g~~~~tlHg-----~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~G 615 (673)
T KOG0333|consen 541 GYKVTTLHG-----GKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSG 615 (673)
T ss_pred cceEEEeeC-----CccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCc
Confidence 799999999 999999999999999999999999999999999999999999999999999999999999999884
Q ss_pred E--EEEecCC
Q 000174 829 I--LMIERGN 836 (1931)
Q Consensus 829 i--vlv~~~~ 836 (1931)
+ .|+...+
T Consensus 616 taiSflt~~d 625 (673)
T KOG0333|consen 616 TAISFLTPAD 625 (673)
T ss_pred eeEEEeccch
Confidence 4 4455444
|
|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=408.01 Aligned_cols=355 Identities=21% Similarity=0.277 Sum_probs=271.8
Q ss_pred CCCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe
Q 000174 280 GINQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV 358 (1931)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv 358 (1931)
..+|.++...-....++..+||..|+|+|..+||.++- +|++.|+.||||||.+|++||++.+...+.+-.-.+|||||
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~ 259 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLV 259 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEe
Confidence 34566666655566899999999999999999999887 99999999999999999999998887665555567899999
Q ss_pred CChhHHHHHHHHHHH---HcCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcc-cccccceeEEEEeC
Q 000174 359 PKVPLVYQQAEVIRE---QTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS-IIKMEAINLLILDE 434 (1931)
Q Consensus 359 PT~~Lv~Q~~~~l~~---~~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~-~l~l~~i~lLV~DE 434 (1931)
|||+|+.|.+.+.++ ++.+.|++..||.++. .+-..+...++|||+|||+|.|+|++. .+.++++.+||+||
T Consensus 260 PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk----~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDE 335 (691)
T KOG0338|consen 260 PTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLK----AQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDE 335 (691)
T ss_pred ccHHHHHHHHHHHHHHHhhccceeeeeecCccHH----HHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEech
Confidence 999999999988776 5689999999998763 333344579999999999999999985 47899999999999
Q ss_pred CCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCc
Q 000174 435 CHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPS 514 (1931)
Q Consensus 435 aH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~ 514 (1931)
||+|+.. .|...|.+++..+++. .|.+++|||-.. .+..|-. -.+.+|.
T Consensus 336 ADRMLee-gFademnEii~lcpk~--RQTmLFSATMte------------eVkdL~s----------------lSL~kPv 384 (691)
T KOG0338|consen 336 ADRMLEE-GFADEMNEIIRLCPKN--RQTMLFSATMTE------------EVKDLAS----------------LSLNKPV 384 (691)
T ss_pred HHHHHHH-HHHHHHHHHHHhcccc--ccceeehhhhHH------------HHHHHHH----------------hhcCCCe
Confidence 9999996 9999999999999875 788999999542 3333322 2233454
Q ss_pred eeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHH
Q 000174 515 EVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINY 594 (1931)
Q Consensus 515 e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~ 594 (1931)
.+.+.-... ....|.+
T Consensus 385 rifvd~~~~-~a~~LtQ--------------------------------------------------------------- 400 (691)
T KOG0338|consen 385 RIFVDPNKD-TAPKLTQ--------------------------------------------------------------- 400 (691)
T ss_pred EEEeCCccc-cchhhhH---------------------------------------------------------------
Confidence 443321110 0000000
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccc
Q 000174 595 ALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEE 674 (1931)
Q Consensus 595 ~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 674 (1931)
.|++
T Consensus 401 -------------------------------------EFiR--------------------------------------- 404 (691)
T KOG0338|consen 401 -------------------------------------EFIR--------------------------------------- 404 (691)
T ss_pred -------------------------------------HHhe---------------------------------------
Confidence 0000
Q ss_pred ccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEE
Q 000174 675 GELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSAS 754 (1931)
Q Consensus 675 ~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~ 754 (1931)
+.......+-..|..++... -..++||||.++..|..|.-+|.- -|+++.-
T Consensus 405 ----------------------IR~~re~dRea~l~~l~~rt---f~~~~ivFv~tKk~AHRl~IllGL----lgl~agE 455 (691)
T KOG0338|consen 405 ----------------------IRPKREGDREAMLASLITRT---FQDRTIVFVRTKKQAHRLRILLGL----LGLKAGE 455 (691)
T ss_pred ----------------------eccccccccHHHHHHHHHHh---cccceEEEEehHHHHHHHHHHHHH----hhchhhh
Confidence 00000011122233333332 146899999999999999888764 5899999
Q ss_pred EEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEEEEec
Q 000174 755 LIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIER 834 (1931)
Q Consensus 755 l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ivlv~~ 834 (1931)
+|| +++|.+|.+.|++|++++++||||||||+|||||+.+..||||++|.+...|+||+||+.|+|..+..+.-.
T Consensus 456 lHG-----sLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlv 530 (691)
T KOG0338|consen 456 LHG-----SLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLV 530 (691)
T ss_pred hcc-----cccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEe
Confidence 999 999999999999999999999999999999999999999999999999999999999999999885544433
Q ss_pred CChhHHHHHH
Q 000174 835 GNLSHATFLR 844 (1931)
Q Consensus 835 ~~~~~~~~l~ 844 (1931)
++. +...++
T Consensus 531 gE~-dRkllK 539 (691)
T KOG0338|consen 531 GES-DRKLLK 539 (691)
T ss_pred ccc-cHHHHH
Confidence 332 244443
|
|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-43 Score=388.60 Aligned_cols=358 Identities=20% Similarity=0.251 Sum_probs=277.7
Q ss_pred CCCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe
Q 000174 280 GINQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV 358 (1931)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv 358 (1931)
..+|...|..++..+.+..+++.+|||+|..+||.+++ +|||.++.||||||.+|.+||.+.+.. .+.+..++||.
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLse---dP~giFalvlT 82 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSE---DPYGIFALVLT 82 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhcc---CCCcceEEEec
Confidence 45677788888888999999999999999999999999 999999999999999999999887664 45677899999
Q ss_pred CChhHHHHHHHHHHH---HcCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcc----cccccceeEEE
Q 000174 359 PKVPLVYQQAEVIRE---QTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS----IIKMEAINLLI 431 (1931)
Q Consensus 359 PT~~Lv~Q~~~~l~~---~~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~----~l~l~~i~lLV 431 (1931)
||++|+.|+++.|.. ..++++.+++|++..-. +-..+...+||||+||++|.+++... .+.+.++.++|
T Consensus 83 PTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~----qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflV 158 (442)
T KOG0340|consen 83 PTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIM----QAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLV 158 (442)
T ss_pred chHHHHHHHHHHHHHhcccccceEEEEEccHHHhh----hhhhcccCCCeEecCccccccccccCCccchhhhhceeeEE
Confidence 999999999998875 35899999999986422 22334478999999999999998764 35688999999
Q ss_pred EeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCC
Q 000174 432 LDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVP 511 (1931)
Q Consensus 432 ~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~ 511 (1931)
+|||++++.. .|..+++.+....|.. .+.++||||... .+..+. .. .+.
T Consensus 159 lDEADrvL~~-~f~d~L~~i~e~lP~~--RQtLlfSATitd------------~i~ql~---~~-------------~i~ 207 (442)
T KOG0340|consen 159 LDEADRVLAG-CFPDILEGIEECLPKP--RQTLLFSATITD------------TIKQLF---GC-------------PIT 207 (442)
T ss_pred ecchhhhhcc-chhhHHhhhhccCCCc--cceEEEEeehhh------------HHHHhh---cC-------------Ccc
Confidence 9999999995 8999999988877653 689999999653 222221 10 011
Q ss_pred CCceeEEEe-ccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHH
Q 000174 512 MPSEVVVEY-DKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLR 590 (1931)
Q Consensus 512 ~p~e~~~~y-~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~ 590 (1931)
.+....+.. +....
T Consensus 208 k~~a~~~e~~~~vst----------------------------------------------------------------- 222 (442)
T KOG0340|consen 208 KSIAFELEVIDGVST----------------------------------------------------------------- 222 (442)
T ss_pred cccceEEeccCCCCc-----------------------------------------------------------------
Confidence 110000000 00000
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcc
Q 000174 591 AINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTN 670 (1931)
Q Consensus 591 ~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 670 (1931)
.+
T Consensus 223 ------------------------------------------------------------------------------ve 224 (442)
T KOG0340|consen 223 ------------------------------------------------------------------------------VE 224 (442)
T ss_pred ------------------------------------------------------------------------------hh
Confidence 00
Q ss_pred ccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCc
Q 000174 671 EIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFV 750 (1931)
Q Consensus 671 ~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~ 750 (1931)
.|..++ .......|-..|+.+|..++..+...+||||++..+++.|+..|+.+ .+
T Consensus 225 tL~q~y---------------------I~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~l----e~ 279 (442)
T KOG0340|consen 225 TLYQGY---------------------ILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNL----EV 279 (442)
T ss_pred hhhhhe---------------------eecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhh----ce
Confidence 000000 01122345567788888886557788999999999999999999984 68
Q ss_pred eeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--E
Q 000174 751 KSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--Y 828 (1931)
Q Consensus 751 ~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ 828 (1931)
++..+|+ .|+|++|...|.+||++..+||||||||+||+|||.|++|||||+|.+|..||||+||++|+|.. .
T Consensus 280 r~~~lHs-----~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~a 354 (442)
T KOG0340|consen 280 RVVSLHS-----QMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMA 354 (442)
T ss_pred eeeehhh-----cchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcce
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999888877 3
Q ss_pred EEEEecCChhHHHHHHHHHHHHHHHH
Q 000174 829 ILMIERGNLSHATFLRNARNSEETLR 854 (1931)
Q Consensus 829 ivlv~~~~~~~~~~l~~~~~~e~~l~ 854 (1931)
+.++.. ..++.++.+|+.+.
T Consensus 355 iSivt~------rDv~l~~aiE~~ig 374 (442)
T KOG0340|consen 355 ISIVTQ------RDVELLQAIEEEIG 374 (442)
T ss_pred EEEech------hhHHHHHHHHHHHh
Confidence 444442 23455566666554
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=439.48 Aligned_cols=347 Identities=18% Similarity=0.221 Sum_probs=261.5
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhh--hcCCCcEEEEE
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQ--RQNKKMLAVFL 357 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~--~~~~~~~vL~L 357 (1931)
.+|...+..+...+.+.+.++.+|+++|.+++|.++. +|+|++++||||||++|++|+...+.... ..+.++.+|||
T Consensus 130 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL 209 (545)
T PTZ00110 130 VSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVL 209 (545)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEE
Confidence 3444444444455889999999999999999999999 99999999999999999999876554321 12345789999
Q ss_pred eCChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeC
Q 000174 358 VPKVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDE 434 (1931)
Q Consensus 358 vPT~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DE 434 (1931)
|||++||.|+.++++.+. ++++..++|+... ..++..+..+++|+|+||++|.+++.++...+.++++|||||
T Consensus 210 ~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~----~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDE 285 (545)
T PTZ00110 210 APTRELAEQIREQCNKFGASSKIRNTVAYGGVPK----RGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDE 285 (545)
T ss_pred CChHHHHHHHHHHHHHHhcccCccEEEEeCCCCH----HHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeeh
Confidence 999999999999999864 5778888888653 234455557899999999999999999888999999999999
Q ss_pred CCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCc
Q 000174 435 CHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPS 514 (1931)
Q Consensus 435 aH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~ 514 (1931)
||++.+ +.|...++.+...... .++++++|||... .+..+...+.. ..|.
T Consensus 286 Ad~mld-~gf~~~i~~il~~~~~--~~q~l~~SAT~p~------------~v~~l~~~l~~---------------~~~v 335 (545)
T PTZ00110 286 ADRMLD-MGFEPQIRKIVSQIRP--DRQTLMWSATWPK------------EVQSLARDLCK---------------EEPV 335 (545)
T ss_pred HHhhhh-cchHHHHHHHHHhCCC--CCeEEEEEeCCCH------------HHHHHHHHHhc---------------cCCE
Confidence 999998 4788888877765532 4789999999642 12222111100 0010
Q ss_pred eeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHH
Q 000174 515 EVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINY 594 (1931)
Q Consensus 515 e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~ 594 (1931)
...+ ..... .
T Consensus 336 ~i~v--g~~~l------------------------------------------------~-------------------- 345 (545)
T PTZ00110 336 HVNV--GSLDL------------------------------------------------T-------------------- 345 (545)
T ss_pred EEEE--CCCcc------------------------------------------------c--------------------
Confidence 0000 00000 0
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccc
Q 000174 595 ALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEE 674 (1931)
Q Consensus 595 ~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 674 (1931)
. ...+
T Consensus 346 ---------------------------------------------------------------------~----~~~i-- 350 (545)
T PTZ00110 346 ---------------------------------------------------------------------A----CHNI-- 350 (545)
T ss_pred ---------------------------------------------------------------------c----CCCe--
Confidence 0 0000
Q ss_pred ccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEE
Q 000174 675 GELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSAS 754 (1931)
Q Consensus 675 ~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~ 754 (1931)
.+.+.......|...|.++|.... ....++||||+++.+|+.|+..|.. .++.+..
T Consensus 351 -------------------~q~~~~~~~~~k~~~L~~ll~~~~-~~~~k~LIF~~t~~~a~~l~~~L~~----~g~~~~~ 406 (545)
T PTZ00110 351 -------------------KQEVFVVEEHEKRGKLKMLLQRIM-RDGDKILIFVETKKGADFLTKELRL----DGWPALC 406 (545)
T ss_pred -------------------eEEEEEEechhHHHHHHHHHHHhc-ccCCeEEEEecChHHHHHHHHHHHH----cCCcEEE
Confidence 000000011345666667776542 2567999999999999999999987 6789999
Q ss_pred EEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE--EEEE
Q 000174 755 LIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY--ILMI 832 (1931)
Q Consensus 755 l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~--ivlv 832 (1931)
+|| ++++.+|.+++++|++|+++|||||+++++|||||+|++||+||+|.++.+|+||+|||||.|..+ +.++
T Consensus 407 ihg-----~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~ 481 (545)
T PTZ00110 407 IHG-----DKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFL 481 (545)
T ss_pred EEC-----CCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEE
Confidence 999 999999999999999999999999999999999999999999999999999999999999999873 4444
Q ss_pred ecC
Q 000174 833 ERG 835 (1931)
Q Consensus 833 ~~~ 835 (1931)
..+
T Consensus 482 ~~~ 484 (545)
T PTZ00110 482 TPD 484 (545)
T ss_pred Ccc
Confidence 433
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-42 Score=435.47 Aligned_cols=341 Identities=22% Similarity=0.294 Sum_probs=266.9
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP 359 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP 359 (1931)
..|.+.+..+...+++.+.+|..|+|+|..++|.++. +|+|+.++||||||++|++|+.+.+... .......+|||+|
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~-~~~~~~~aLil~P 107 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKS-VERKYVSALILAP 107 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcc-cccCCCceEEECC
Confidence 4456666555566899999999999999999999999 9999999999999999999998886632 1111112999999
Q ss_pred ChhHHHHHHHHHHHHc----CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCC
Q 000174 360 KVPLVYQQAEVIREQT----GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDEC 435 (1931)
Q Consensus 360 T~~Lv~Q~~~~l~~~~----~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEa 435 (1931)
||+||.|++++++.+. ++++..++|+.+... +...+-.+++|||+||++|+|++.++.+.+..+.++|+|||
T Consensus 108 TRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~----q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEA 183 (513)
T COG0513 108 TRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRK----QIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEA 183 (513)
T ss_pred CHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHH----HHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccH
Confidence 9999999999998853 578999999977532 22333347999999999999999999999999999999999
Q ss_pred CcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCce
Q 000174 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSE 515 (1931)
Q Consensus 436 H~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e 515 (1931)
|+|++ ++|...+..+...++. ..+++++|||... .+..|.. .+...|..
T Consensus 184 DrmLd-~Gf~~~i~~I~~~~p~--~~qtllfSAT~~~------------~i~~l~~----------------~~l~~p~~ 232 (513)
T COG0513 184 DRMLD-MGFIDDIEKILKALPP--DRQTLLFSATMPD------------DIRELAR----------------RYLNDPVE 232 (513)
T ss_pred hhhhc-CCCHHHHHHHHHhCCc--ccEEEEEecCCCH------------HHHHHHH----------------HHccCCcE
Confidence 99999 5999999999988776 5899999999652 1222211 22223322
Q ss_pred eEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHH
Q 000174 516 VVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYA 595 (1931)
Q Consensus 516 ~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~ 595 (1931)
..+.....
T Consensus 233 i~v~~~~~------------------------------------------------------------------------ 240 (513)
T COG0513 233 IEVSVEKL------------------------------------------------------------------------ 240 (513)
T ss_pred EEEccccc------------------------------------------------------------------------
Confidence 21110000
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccc
Q 000174 596 LGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEG 675 (1931)
Q Consensus 596 l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 675 (1931)
......+.+.
T Consensus 241 ----------------------------------------------------------------------~~~~~~i~q~ 250 (513)
T COG0513 241 ----------------------------------------------------------------------ERTLKKIKQF 250 (513)
T ss_pred ----------------------------------------------------------------------cccccCceEE
Confidence 0000000000
Q ss_pred cccccccccCCCchhhhhhhcccCCCCC-HHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEE
Q 000174 676 ELLDSHVVSGGEHVDVIIGAAVADGKVT-PKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSAS 754 (1931)
Q Consensus 676 ~l~~~~~~s~~e~~~~~i~~~~~~~~~s-~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~ 754 (1931)
+...... .|+..|..+|... ...++||||+++..++.|+..|.. .++++..
T Consensus 251 ---------------------~~~v~~~~~k~~~L~~ll~~~---~~~~~IVF~~tk~~~~~l~~~l~~----~g~~~~~ 302 (513)
T COG0513 251 ---------------------YLEVESEEEKLELLLKLLKDE---DEGRVIVFVRTKRLVEELAESLRK----RGFKVAA 302 (513)
T ss_pred ---------------------EEEeCCHHHHHHHHHHHHhcC---CCCeEEEEeCcHHHHHHHHHHHHH----CCCeEEE
Confidence 0001111 4888888888764 234799999999999999999998 6899999
Q ss_pred EEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEEEE
Q 000174 755 LIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMI 832 (1931)
Q Consensus 755 l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ivlv 832 (1931)
||| ++++.+|.+++++|++|+++|||||||++||||||++++|||||+|.++..|+||+|||||+|..+..+.
T Consensus 303 lhG-----~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~ 375 (513)
T COG0513 303 LHG-----DLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAIS 375 (513)
T ss_pred ecC-----CCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEE
Confidence 999 9999999999999999999999999999999999999999999999999999999999999998844433
|
|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=401.32 Aligned_cols=344 Identities=20% Similarity=0.263 Sum_probs=267.1
Q ss_pred chhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhh-cCCCcEEEEEeCChhHHHHHHH
Q 000174 292 KSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQR-QNKKMLAVFLVPKVPLVYQQAE 369 (1931)
Q Consensus 292 ~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~-~~~~~~vL~LvPT~~Lv~Q~~~ 369 (1931)
...+++.+||..+|++|...++.++. +|+++++.||+|||++|++|+.+++..... ...+..++||||||+|+.|.+.
T Consensus 93 t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~ 172 (543)
T KOG0342|consen 93 TLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFA 172 (543)
T ss_pred HHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHH
Confidence 45899999999999999999999999 999999999999999999999888776542 3455679999999999999999
Q ss_pred HHHHHc----CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcc-cccccceeEEEEeCCCcccCCCcH
Q 000174 370 VIREQT----GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS-IIKMEAINLLILDECHHAVKKHPY 444 (1931)
Q Consensus 370 ~l~~~~----~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~-~l~l~~i~lLV~DEaH~~~~~~~~ 444 (1931)
++++.+ +..+.++.|+.+- ...-+++..+++|+|+|||+|+|+|++. .+....++++|+|||||+++ .+|
T Consensus 173 eak~Ll~~h~~~~v~~viGG~~~----~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd-~GF 247 (543)
T KOG0342|consen 173 EAKELLKYHESITVGIVIGGNNF----SVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLD-IGF 247 (543)
T ss_pred HHHHHHhhCCCcceEEEeCCccc----hHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhh-ccc
Confidence 998865 5678999998753 3344455569999999999999999983 34556778999999999999 699
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccch
Q 000174 445 SLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAA 524 (1931)
Q Consensus 445 ~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~ 524 (1931)
...|..++...+. ..+.+++|||-.. .+..|... .-.+....+.....
T Consensus 248 ~~di~~Ii~~lpk--~rqt~LFSAT~~~------------kV~~l~~~-----------------~L~~d~~~v~~~d~- 295 (543)
T KOG0342|consen 248 EEDVEQIIKILPK--QRQTLLFSATQPS------------KVKDLARG-----------------ALKRDPVFVNVDDG- 295 (543)
T ss_pred HHHHHHHHHhccc--cceeeEeeCCCcH------------HHHHHHHH-----------------hhcCCceEeecCCC-
Confidence 9999999998874 5889999999542 22222221 00011111111000
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHH
Q 000174 525 SLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCA 604 (1931)
Q Consensus 525 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a 604 (1931)
T Consensus 296 -------------------------------------------------------------------------------- 295 (543)
T KOG0342|consen 296 -------------------------------------------------------------------------------- 295 (543)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccccccccccc
Q 000174 605 YKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVS 684 (1931)
Q Consensus 605 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s 684 (1931)
.....++.++++++..
T Consensus 296 -----------------------------------------------------------~~~~The~l~Qgyvv~----- 311 (543)
T KOG0342|consen 296 -----------------------------------------------------------GERETHERLEQGYVVA----- 311 (543)
T ss_pred -----------------------------------------------------------CCcchhhcccceEEec-----
Confidence 0001122222222221
Q ss_pred CCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccc
Q 000174 685 GGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEM 764 (1931)
Q Consensus 685 ~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~ 764 (1931)
....++..|..+|++.. ...|+||||.+...+.+++++|+. -.+++..||| .+
T Consensus 312 ----------------~~~~~f~ll~~~LKk~~--~~~KiiVF~sT~~~vk~~~~lL~~----~dlpv~eiHg-----k~ 364 (543)
T KOG0342|consen 312 ----------------PSDSRFSLLYTFLKKNI--KRYKIIVFFSTCMSVKFHAELLNY----IDLPVLEIHG-----KQ 364 (543)
T ss_pred ----------------cccchHHHHHHHHHHhc--CCceEEEEechhhHHHHHHHHHhh----cCCchhhhhc-----CC
Confidence 22334677888888752 238999999999999999999997 4689999999 99
Q ss_pred cHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--EEEEEecCChhHHHH
Q 000174 765 RTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--YILMIERGNLSHATF 842 (1931)
Q Consensus 765 ~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivlv~~~~~~~~~~ 842 (1931)
+|..|..+..+|++.+.-|||||||++||+|+|+|++||+||+|.++.+||||+|||+|.|.. .++++.+.+ ..|
T Consensus 365 ~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~E---l~F 441 (543)
T KOG0342|consen 365 KQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWE---LGF 441 (543)
T ss_pred cccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhH---HHH
Confidence 999999999999999999999999999999999999999999999999999999999998876 555555433 444
Q ss_pred HHHH
Q 000174 843 LRNA 846 (1931)
Q Consensus 843 l~~~ 846 (1931)
++.+
T Consensus 442 lr~L 445 (543)
T KOG0342|consen 442 LRYL 445 (543)
T ss_pred HHHH
Confidence 4433
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-41 Score=425.04 Aligned_cols=342 Identities=20% Similarity=0.204 Sum_probs=260.2
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhh----cCCCcEEE
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQR----QNKKMLAV 355 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~----~~~~~~vL 355 (1931)
..|.+.+..+...+++...++..|+|+|.++++.++. +|+|+++|||||||++|++|+.+.+..... ...+.++|
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~l 87 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRAL 87 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 3455555544566889999999999999999999999 999999999999999999999877654321 12346899
Q ss_pred EEeCChhHHHHHHHHHHHH---cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEE
Q 000174 356 FLVPKVPLVYQQAEVIREQ---TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLIL 432 (1931)
Q Consensus 356 ~LvPT~~Lv~Q~~~~l~~~---~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~ 432 (1931)
||+||++||.|+.+++..+ +++++..++|+...+ ..+.....+++|+|+||++|.+++.++.+.+.++++|||
T Consensus 88 il~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~----~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lVi 163 (423)
T PRK04837 88 IMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYD----KQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVL 163 (423)
T ss_pred EECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHH----HHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEE
Confidence 9999999999998887765 478999999986542 233333457899999999999999998999999999999
Q ss_pred eCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCC
Q 000174 433 DECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPM 512 (1931)
Q Consensus 433 DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~ 512 (1931)
||||++.+. .|...+..++...+.....+.+++|||+.. .+..+.. .....
T Consensus 164 DEad~l~~~-~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~------------~~~~~~~----------------~~~~~ 214 (423)
T PRK04837 164 DEADRMFDL-GFIKDIRWLFRRMPPANQRLNMLFSATLSY------------RVRELAF----------------EHMNN 214 (423)
T ss_pred ecHHHHhhc-ccHHHHHHHHHhCCCccceeEEEEeccCCH------------HHHHHHH----------------HHCCC
Confidence 999999884 788888888877665445667999999752 1111110 11111
Q ss_pred CceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHH
Q 000174 513 PSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAI 592 (1931)
Q Consensus 513 p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~ 592 (1931)
|....+ ......
T Consensus 215 p~~i~v--~~~~~~------------------------------------------------------------------ 226 (423)
T PRK04837 215 PEYVEV--EPEQKT------------------------------------------------------------------ 226 (423)
T ss_pred CEEEEE--cCCCcC------------------------------------------------------------------
Confidence 211111 000000
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccc
Q 000174 593 NYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEI 672 (1931)
Q Consensus 593 ~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 672 (1931)
...+
T Consensus 227 ----------------------------------------------------------------------------~~~i 230 (423)
T PRK04837 227 ----------------------------------------------------------------------------GHRI 230 (423)
T ss_pred ----------------------------------------------------------------------------CCce
Confidence 0000
Q ss_pred ccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCcee
Q 000174 673 EEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKS 752 (1931)
Q Consensus 673 ~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~ 752 (1931)
.. .........|...|..++... ...++||||+++..++.|++.|.. .++++
T Consensus 231 ~~---------------------~~~~~~~~~k~~~l~~ll~~~---~~~~~lVF~~t~~~~~~l~~~L~~----~g~~v 282 (423)
T PRK04837 231 KE---------------------ELFYPSNEEKMRLLQTLIEEE---WPDRAIIFANTKHRCEEIWGHLAA----DGHRV 282 (423)
T ss_pred eE---------------------EEEeCCHHHHHHHHHHHHHhc---CCCeEEEEECCHHHHHHHHHHHHh----CCCcE
Confidence 00 000001123555566666442 357899999999999999999987 68899
Q ss_pred EEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEEEE
Q 000174 753 ASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMI 832 (1931)
Q Consensus 753 ~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ivlv 832 (1931)
..+|| +|++.+|.+++++|++|+++|||||+++++|||+|+|++||+||+|.++.+|+||+|||||.|+.+..++
T Consensus 283 ~~lhg-----~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~ 357 (423)
T PRK04837 283 GLLTG-----DVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSIS 357 (423)
T ss_pred EEecC-----CCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEE
Confidence 99999 9999999999999999999999999999999999999999999999999999999999999998854443
|
|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=385.91 Aligned_cols=338 Identities=21% Similarity=0.282 Sum_probs=262.1
Q ss_pred CcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCC--cEEEEEeCChhHHHH
Q 000174 290 GKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKK--MLAVFLVPKVPLVYQ 366 (1931)
Q Consensus 290 ~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~--~~vL~LvPT~~Lv~Q 366 (1931)
+...+++...||...||+|..++|.+++ +|+++-++||||||++|++|+.+.+.+.....++ .-+|||+|||+|+.|
T Consensus 15 ~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~Q 94 (567)
T KOG0345|consen 15 PWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQ 94 (567)
T ss_pred HHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHH
Confidence 4456889999999999999999999999 9999999999999999999999998544333222 369999999999999
Q ss_pred HHHHHHHHc----CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhccc--ccccceeEEEEeCCCcccC
Q 000174 367 QAEVIREQT----GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSI--IKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 367 ~~~~l~~~~----~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~--l~l~~i~lLV~DEaH~~~~ 440 (1931)
+.+++..+. .+.+.++.|+..++. +-..+ .-++++|+|+|||+|.+++.+.. +.+..+.+||+||||++++
T Consensus 95 I~~V~~~F~~~l~~l~~~l~vGG~~v~~-Di~~f--kee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLld 171 (567)
T KOG0345|consen 95 IREVAQPFLEHLPNLNCELLVGGRSVEE-DIKTF--KEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLD 171 (567)
T ss_pred HHHHHHHHHHhhhccceEEEecCccHHH-HHHHH--HHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhc
Confidence 999988754 688999999977643 11222 12589999999999999999843 5566999999999999998
Q ss_pred CCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEe
Q 000174 441 KHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEY 520 (1931)
Q Consensus 441 ~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y 520 (1931)
++|...+..++...|+. .+.=++|||-.. ....|- ...+..|..+.+.-
T Consensus 172 -mgFe~~~n~ILs~LPKQ--RRTGLFSATq~~------------~v~dL~----------------raGLRNpv~V~V~~ 220 (567)
T KOG0345|consen 172 -MGFEASVNTILSFLPKQ--RRTGLFSATQTQ------------EVEDLA----------------RAGLRNPVRVSVKE 220 (567)
T ss_pred -ccHHHHHHHHHHhcccc--cccccccchhhH------------HHHHHH----------------HhhccCceeeeecc
Confidence 79999999999998875 566778999432 111111 01122232221110
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHh
Q 000174 521 DKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELG 600 (1931)
Q Consensus 521 ~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg 600 (1931)
..... .
T Consensus 221 k~~~~--------------------------------------------------------------------------t 226 (567)
T KOG0345|consen 221 KSKSA--------------------------------------------------------------------------T 226 (567)
T ss_pred ccccc--------------------------------------------------------------------------C
Confidence 00000 0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccccccc
Q 000174 601 QWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDS 680 (1931)
Q Consensus 601 ~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~ 680 (1931)
...+.-.
T Consensus 227 --------------------------------------------------------------------PS~L~~~----- 233 (567)
T KOG0345|consen 227 --------------------------------------------------------------------PSSLALE----- 233 (567)
T ss_pred --------------------------------------------------------------------chhhcce-----
Confidence 0000000
Q ss_pred ccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCC
Q 000174 681 HVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNN 760 (1931)
Q Consensus 681 ~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~ 760 (1931)
........|+..|+++|... ...|+|||..+...+++...+|..+ +....+..+||
T Consensus 234 ----------------Y~v~~a~eK~~~lv~~L~~~---~~kK~iVFF~TCasVeYf~~~~~~~--l~~~~i~~iHG--- 289 (567)
T KOG0345|consen 234 ----------------YLVCEADEKLSQLVHLLNNN---KDKKCIVFFPTCASVEYFGKLFSRL--LKKREIFSIHG--- 289 (567)
T ss_pred ----------------eeEecHHHHHHHHHHHHhcc---ccccEEEEecCcchHHHHHHHHHHH--hCCCcEEEecc---
Confidence 00012246888999999764 5789999999999999999999876 36788999999
Q ss_pred CccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--EEEEEec
Q 000174 761 SQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--YILMIER 834 (1931)
Q Consensus 761 ~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivlv~~ 834 (1931)
.|++..|..++++|++-.-.+|+||||++||||||++++||+||+|.++..|+||.|||+|.|+. .++|+.+
T Consensus 290 --K~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p 363 (567)
T KOG0345|consen 290 --KMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNP 363 (567)
T ss_pred --hhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecc
Confidence 99999999999999997777999999999999999999999999999999999999999999887 5555554
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=425.82 Aligned_cols=342 Identities=22% Similarity=0.294 Sum_probs=255.2
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhh----cCCCcEEEE
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQR----QNKKMLAVF 356 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~----~~~~~~vL~ 356 (1931)
.|...+..+...+.+.+.+|..|+|+|.++++.++. +|+|++++||||||++|++|+...+..... ...++++||
T Consensus 122 ~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLI 201 (518)
T PLN00206 122 SFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMV 201 (518)
T ss_pred CHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEE
Confidence 344444444455889999999999999999999999 999999999999999999998876643221 234678999
Q ss_pred EeCChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEe
Q 000174 357 LVPKVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILD 433 (1931)
Q Consensus 357 LvPT~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~D 433 (1931)
|+||++|+.|+.++++.+. ++++..+.|+.... .+...+..+++|+|+||++|.+++.++.+.+.++.+||||
T Consensus 202 L~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~----~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViD 277 (518)
T PLN00206 202 LTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMP----QQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLD 277 (518)
T ss_pred EeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchH----HHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEee
Confidence 9999999999998888754 56777788876532 2233445689999999999999999888899999999999
Q ss_pred CCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCC
Q 000174 434 ECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMP 513 (1931)
Q Consensus 434 EaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p 513 (1931)
|||++.+. +|...+..++...+ .++++++|||... .+..+...+.. .+
T Consensus 278 Ead~ml~~-gf~~~i~~i~~~l~---~~q~l~~SATl~~------------~v~~l~~~~~~----------------~~ 325 (518)
T PLN00206 278 EVDCMLER-GFRDQVMQIFQALS---QPQVLLFSATVSP------------EVEKFASSLAK----------------DI 325 (518)
T ss_pred cHHHHhhc-chHHHHHHHHHhCC---CCcEEEEEeeCCH------------HHHHHHHHhCC----------------CC
Confidence 99999984 67777666766543 4799999999753 22222222111 01
Q ss_pred ceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHH
Q 000174 514 SEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAIN 593 (1931)
Q Consensus 514 ~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~ 593 (1931)
.. +........ .
T Consensus 326 ~~--i~~~~~~~~---------------------~--------------------------------------------- 337 (518)
T PLN00206 326 IL--ISIGNPNRP---------------------N--------------------------------------------- 337 (518)
T ss_pred EE--EEeCCCCCC---------------------C---------------------------------------------
Confidence 00 000000000 0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccc
Q 000174 594 YALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIE 673 (1931)
Q Consensus 594 ~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 673 (1931)
..
T Consensus 338 ----------------------------------------------------------------------------~~-- 339 (518)
T PLN00206 338 ----------------------------------------------------------------------------KA-- 339 (518)
T ss_pred ----------------------------------------------------------------------------cc--
Confidence 00
Q ss_pred cccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeE
Q 000174 674 EGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSA 753 (1931)
Q Consensus 674 ~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~ 753 (1931)
+.+.+.......|...|.++|.... ....++||||+++..++.|++.|... .++++.
T Consensus 340 -------------------v~q~~~~~~~~~k~~~l~~~l~~~~-~~~~~~iVFv~s~~~a~~l~~~L~~~---~g~~~~ 396 (518)
T PLN00206 340 -------------------VKQLAIWVETKQKKQKLFDILKSKQ-HFKPPAVVFVSSRLGADLLANAITVV---TGLKAL 396 (518)
T ss_pred -------------------eeEEEEeccchhHHHHHHHHHHhhc-ccCCCEEEEcCCchhHHHHHHHHhhc---cCcceE
Confidence 0000000011234455666665431 22357999999999999999999753 478899
Q ss_pred EEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--EEEE
Q 000174 754 SLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--YILM 831 (1931)
Q Consensus 754 ~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivl 831 (1931)
.+|| ++++.+|.+++++|++|+++|||||+++++|||+|+|++||+||+|.++.+|+||+|||||.|.. .++|
T Consensus 397 ~~Hg-----~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f 471 (518)
T PLN00206 397 SIHG-----EKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVF 471 (518)
T ss_pred EeeC-----CCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEE
Confidence 9999 99999999999999999999999999999999999999999999999999999999999999876 3444
Q ss_pred Ee
Q 000174 832 IE 833 (1931)
Q Consensus 832 v~ 833 (1931)
+.
T Consensus 472 ~~ 473 (518)
T PLN00206 472 VN 473 (518)
T ss_pred Ec
Confidence 44
|
|
| >PRK14718 ribonuclease III; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=402.75 Aligned_cols=223 Identities=28% Similarity=0.428 Sum_probs=190.5
Q ss_pred HHHHHHHcCCCcCCHHHHHHHhcCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHHHH
Q 000174 1592 FHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFA 1671 (1931)
Q Consensus 1592 ~~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~La 1671 (1931)
+..||++|||+|+|+.||.+||||+||.. .+|||||||||+||+++|++|||.+||++++|.||.+|+.||||++|+
T Consensus 3 l~~LEkrLGY~Fkn~~LL~eALTH~Sys~---e~NERLEFLGDAVL~liVse~Lf~~fPdl~EGeLT~LRS~LVSnetLA 79 (467)
T PRK14718 3 LSQLESRLRYEFRNAELLRQALTHRSHSA---THNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLY 79 (467)
T ss_pred HHHHHHHhCCCcCCHHHHHHHHhccCcCc---ccHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhHHHH
Confidence 56799999999999999999999999854 489999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCchhhhccCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCceeEEeeec
Q 000174 1672 RVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQ 1751 (1931)
Q Consensus 1672 ~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~~~v~~~~~ 1751 (1931)
.+|..+||++||+.+.++.. .++...+++|+|+|||||||||+|+|++ .++.|+.
T Consensus 80 ~IAr~LGL~d~Lrlg~gE~~-----------------------sgG~~~~sILADvFEALIGAIYLDsG~e--~a~~fI~ 134 (467)
T PRK14718 80 EIAQALNISDGLRLGEGELR-----------------------SGGFRRPSILADAFEAIIGAVFLDGGFE--AAQGVIK 134 (467)
T ss_pred HHHHHcCchHHHhhCCcccc-----------------------cCCCCChhHHHHHHHHHHHHHHHccCHH--HHHHHHH
Confidence 99999999999998776532 2334679999999999999999999975 5666676
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHhhcCCceeEEeccCCeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhh
Q 000174 1752 PLLDPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEKE 1831 (1931)
Q Consensus 1752 ~~l~~~i~~~~~~~~P~~~L~e~~~~~~~~~~y~~~~~g~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~ 1831 (1931)
++|.+++....
T Consensus 135 ~ll~p~i~~~d--------------------------------------------------------------------- 145 (467)
T PRK14718 135 RLYVPILDHID--------------------------------------------------------------------- 145 (467)
T ss_pred HHHHHHHhhhc---------------------------------------------------------------------
Confidence 66654321100
Q ss_pred hhhhhccCCcCCcccCCCCccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCH
Q 000174 1832 TAEAKEKGDENGKKRKNGTQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSV 1911 (1931)
Q Consensus 1832 ~~~~~~~~~~~~~~~~~~~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sK 1911 (1931)
......||++.||||||++++..|.|.++.++||.|.+.|++.|.|++... .++|.| +||
T Consensus 146 ---------------~~~~~kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~--~G~G~G---~SK 205 (467)
T PRK14718 146 ---------------PRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDI--KVSGSG---ASR 205 (467)
T ss_pred ---------------ccccccCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeee--EEEEEc---CCH
Confidence 000123789999999999999999999999999999999999999975322 248899 999
Q ss_pred HHHHHHHHHHHHHHHhhhCC
Q 000174 1912 KKAKDSAAVLLLELLNKWYS 1931 (1931)
Q Consensus 1912 K~Ak~~AA~~~l~~L~~~~~ 1931 (1931)
|+|+|.||+.||++|....|
T Consensus 206 KeAEQ~AAk~AL~kL~~~~~ 225 (467)
T PRK14718 206 RAAEQAAAKKALDEVTAVAP 225 (467)
T ss_pred HHHHHHHHHHHHHHhcccch
Confidence 99999999999999986543
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=420.45 Aligned_cols=331 Identities=21% Similarity=0.271 Sum_probs=258.0
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK 360 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT 360 (1931)
+|.+.+..+...+++.++++..|+|+|.++++.+++ +|+|+++|||||||++|++|+.+.+.. .....++|||+||
T Consensus 5 ~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~---~~~~~~~lil~Pt 81 (460)
T PRK11776 5 AFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDV---KRFRVQALVLCPT 81 (460)
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhh---ccCCceEEEEeCC
Confidence 345555445556889999999999999999999999 999999999999999999999887653 2234579999999
Q ss_pred hhHHHHHHHHHHHHc----CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCC
Q 000174 361 VPLVYQQAEVIREQT----GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECH 436 (1931)
Q Consensus 361 ~~Lv~Q~~~~l~~~~----~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH 436 (1931)
++|+.|++++++.+. ++++..++|+...+ .++.....+++|+|+||++|.+++.++.+.+.++++|||||||
T Consensus 82 reLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~----~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad 157 (460)
T PRK11776 82 RELADQVAKEIRRLARFIPNIKVLTLCGGVPMG----PQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD 157 (460)
T ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEECCCChH----HHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH
Confidence 999999999998764 67889999987653 2333344689999999999999999988899999999999999
Q ss_pred cccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCcee
Q 000174 437 HAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEV 516 (1931)
Q Consensus 437 ~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~ 516 (1931)
++.+ ++|...+..++...+. ..+++++|||+.. .+..+... +...|...
T Consensus 158 ~~l~-~g~~~~l~~i~~~~~~--~~q~ll~SAT~~~------------~~~~l~~~----------------~~~~~~~i 206 (460)
T PRK11776 158 RMLD-MGFQDAIDAIIRQAPA--RRQTLLFSATYPE------------GIAAISQR----------------FQRDPVEV 206 (460)
T ss_pred HHhC-cCcHHHHHHHHHhCCc--ccEEEEEEecCcH------------HHHHHHHH----------------hcCCCEEE
Confidence 9997 4787777777776654 3789999999752 22222211 11112111
Q ss_pred EEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHH
Q 000174 517 VVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYAL 596 (1931)
Q Consensus 517 ~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l 596 (1931)
.+.-.. .
T Consensus 207 ~~~~~~--~----------------------------------------------------------------------- 213 (460)
T PRK11776 207 KVESTH--D----------------------------------------------------------------------- 213 (460)
T ss_pred EECcCC--C-----------------------------------------------------------------------
Confidence 110000 0
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccc
Q 000174 597 GELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGE 676 (1931)
Q Consensus 597 ~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 676 (1931)
...+.+
T Consensus 214 ------------------------------------------------------------------------~~~i~~-- 219 (460)
T PRK11776 214 ------------------------------------------------------------------------LPAIEQ-- 219 (460)
T ss_pred ------------------------------------------------------------------------CCCeeE--
Confidence 000000
Q ss_pred ccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEE
Q 000174 677 LLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLI 756 (1931)
Q Consensus 677 l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~ 756 (1931)
.........|...|..+|... ...++||||+++..++.+++.|.. .++.+..+|
T Consensus 220 -------------------~~~~~~~~~k~~~l~~ll~~~---~~~~~lVF~~t~~~~~~l~~~L~~----~~~~v~~~h 273 (460)
T PRK11776 220 -------------------RFYEVSPDERLPALQRLLLHH---QPESCVVFCNTKKECQEVADALNA----QGFSALALH 273 (460)
T ss_pred -------------------EEEEeCcHHHHHHHHHHHHhc---CCCceEEEECCHHHHHHHHHHHHh----CCCcEEEEe
Confidence 000001123566666666543 346899999999999999999988 688999999
Q ss_pred ccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE
Q 000174 757 GHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY 828 (1931)
Q Consensus 757 G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ 828 (1931)
| +|++.+|+.+++.|++|+++|||||+++++|||+|++++||+||+|.++.+|+||+|||||.|+.+
T Consensus 274 g-----~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G 340 (460)
T PRK11776 274 G-----DLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKG 340 (460)
T ss_pred C-----CCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcc
Confidence 9 999999999999999999999999999999999999999999999999999999999999999774
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=416.71 Aligned_cols=334 Identities=20% Similarity=0.253 Sum_probs=250.3
Q ss_pred ccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhh---cCCCcEEEEEe
Q 000174 283 QECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQR---QNKKMLAVFLV 358 (1931)
Q Consensus 283 ~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~---~~~~~~vL~Lv 358 (1931)
|...+..+...+.+.+.++..|+++|.++++.+++ +|+|+.+|||||||++|++|+.+.+..... .....++|||+
T Consensus 3 f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~ 82 (456)
T PRK10590 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILT 82 (456)
T ss_pred HHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEe
Confidence 33444444456889999999999999999999999 999999999999999999999887754211 11234799999
Q ss_pred CChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCC
Q 000174 359 PKVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDEC 435 (1931)
Q Consensus 359 PT~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEa 435 (1931)
||++||.|+.++++.+. ++++..++|+...+ .++......++|+|+||++|++++.+..+.++++++||||||
T Consensus 83 PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~----~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEa 158 (456)
T PRK10590 83 PTRELAAQIGENVRDYSKYLNIRSLVVFGGVSIN----PQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEA 158 (456)
T ss_pred CcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHH----HHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecH
Confidence 99999999999998764 67888889887642 234444568999999999999999888889999999999999
Q ss_pred CcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCce
Q 000174 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSE 515 (1931)
Q Consensus 436 H~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e 515 (1931)
|++... .|...++.++...+. ..+++++|||+.. .+..+...+ ...|..
T Consensus 159 h~ll~~-~~~~~i~~il~~l~~--~~q~l~~SAT~~~------------~~~~l~~~~----------------~~~~~~ 207 (456)
T PRK10590 159 DRMLDM-GFIHDIRRVLAKLPA--KRQNLLFSATFSD------------DIKALAEKL----------------LHNPLE 207 (456)
T ss_pred HHHhcc-ccHHHHHHHHHhCCc--cCeEEEEeCCCcH------------HHHHHHHHH----------------cCCCeE
Confidence 999985 666666666665543 3689999999753 222222111 111211
Q ss_pred eEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHH
Q 000174 516 VVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYA 595 (1931)
Q Consensus 516 ~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~ 595 (1931)
..+.......
T Consensus 208 i~~~~~~~~~---------------------------------------------------------------------- 217 (456)
T PRK10590 208 IEVARRNTAS---------------------------------------------------------------------- 217 (456)
T ss_pred EEEecccccc----------------------------------------------------------------------
Confidence 1110000000
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccc
Q 000174 596 LGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEG 675 (1931)
Q Consensus 596 l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 675 (1931)
..+..
T Consensus 218 --------------------------------------------------------------------------~~i~~- 222 (456)
T PRK10590 218 --------------------------------------------------------------------------EQVTQ- 222 (456)
T ss_pred --------------------------------------------------------------------------cceeE-
Confidence 00000
Q ss_pred cccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEE
Q 000174 676 ELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASL 755 (1931)
Q Consensus 676 ~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l 755 (1931)
.+.......|...|..++.. ....++||||+++..++.|++.|.. .++.+..+
T Consensus 223 --------------------~~~~~~~~~k~~~l~~l~~~---~~~~~~lVF~~t~~~~~~l~~~L~~----~g~~~~~l 275 (456)
T PRK10590 223 --------------------HVHFVDKKRKRELLSQMIGK---GNWQQVLVFTRTKHGANHLAEQLNK----DGIRSAAI 275 (456)
T ss_pred --------------------EEEEcCHHHHHHHHHHHHHc---CCCCcEEEEcCcHHHHHHHHHHHHH----CCCCEEEE
Confidence 00000001122222233322 2356899999999999999999987 67899999
Q ss_pred EccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE
Q 000174 756 IGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY 828 (1931)
Q Consensus 756 ~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ 828 (1931)
|| +|++.+|.+++++|++|+++|||||+++++|||+|+|++||+||+|.++.+|+||+|||||.|..+
T Consensus 276 hg-----~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G 343 (456)
T PRK10590 276 HG-----NKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATG 343 (456)
T ss_pred EC-----CCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCe
Confidence 99 999999999999999999999999999999999999999999999999999999999999998763
|
|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=357.69 Aligned_cols=339 Identities=21% Similarity=0.256 Sum_probs=267.0
Q ss_pred CCCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe
Q 000174 280 GINQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV 358 (1931)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv 358 (1931)
...|.+.+.-+.....+-..||.+|..+|+.|++.+++ +|+|+.+..|+|||.+|.+-+++.+.- ..+...++||+
T Consensus 26 ~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~---~~r~tQ~lils 102 (400)
T KOG0328|consen 26 IPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDI---SVRETQALILS 102 (400)
T ss_pred ccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccc---ccceeeEEEec
Confidence 45566777766677888899999999999999999999 999999999999999888765544332 23346899999
Q ss_pred CChhHHHHHHHHHHHH---cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCC
Q 000174 359 PKVPLVYQQAEVIREQ---TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDEC 435 (1931)
Q Consensus 359 PT~~Lv~Q~~~~l~~~---~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEa 435 (1931)
|||+|+.|+.+++... +++++..+.|+.+... ..+..-.+.+||.+||+++++++.++.+.-..+.+||+|||
T Consensus 103 PTRELa~Qi~~vi~alg~~mnvq~hacigg~n~ge----dikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEa 178 (400)
T KOG0328|consen 103 PTRELAVQIQKVILALGDYMNVQCHACIGGKNLGE----DIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEA 178 (400)
T ss_pred ChHHHHHHHHHHHHHhcccccceEEEEecCCccch----hhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccH
Confidence 9999999999998874 4788888888887543 22233368999999999999999999999999999999999
Q ss_pred CcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCce
Q 000174 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSE 515 (1931)
Q Consensus 436 H~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e 515 (1931)
|.+++. +|...+-.+|...|.. .+++++|||... ++.+ ...++.+.|..
T Consensus 179 DemL~k-gfk~Qiydiyr~lp~~--~Qvv~~SATlp~------------eile----------------mt~kfmtdpvr 227 (400)
T KOG0328|consen 179 DEMLNK-GFKEQIYDIYRYLPPG--AQVVLVSATLPH------------EILE----------------MTEKFMTDPVR 227 (400)
T ss_pred HHHHHh-hHHHHHHHHHHhCCCC--ceEEEEeccCcH------------HHHH----------------HHHHhcCCcee
Confidence 999997 8988888888887654 799999999652 2222 23355666655
Q ss_pred eEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHH
Q 000174 516 VVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYA 595 (1931)
Q Consensus 516 ~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~ 595 (1931)
..+.-+.... +-|+++
T Consensus 228 ilvkrdeltl-----EgIKqf----------------------------------------------------------- 243 (400)
T KOG0328|consen 228 ILVKRDELTL-----EGIKQF----------------------------------------------------------- 243 (400)
T ss_pred EEEecCCCch-----hhhhhh-----------------------------------------------------------
Confidence 5443221100 000000
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccc
Q 000174 596 LGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEG 675 (1931)
Q Consensus 596 l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 675 (1931)
....+
T Consensus 244 ----------------~v~ve----------------------------------------------------------- 248 (400)
T KOG0328|consen 244 ----------------FVAVE----------------------------------------------------------- 248 (400)
T ss_pred ----------------eeeec-----------------------------------------------------------
Confidence 00000
Q ss_pred cccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEE
Q 000174 676 ELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASL 755 (1931)
Q Consensus 676 ~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l 755 (1931)
...=|+..|.++.... .-.++||||+++..+++|.+.+++ ..+.+.++
T Consensus 249 -------------------------~EewKfdtLcdLYd~L---tItQavIFcnTk~kVdwLtekm~~----~nftVssm 296 (400)
T KOG0328|consen 249 -------------------------KEEWKFDTLCDLYDTL---TITQAVIFCNTKRKVDWLTEKMRE----ANFTVSSM 296 (400)
T ss_pred -------------------------hhhhhHhHHHHHhhhh---ehheEEEEecccchhhHHHHHHHh----hCceeeec
Confidence 0001444444444332 346899999999999999999998 68999999
Q ss_pred EccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEEEE
Q 000174 756 IGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMI 832 (1931)
Q Consensus 756 ~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ivlv 832 (1931)
|| +|.+++|.+++.+||+|+.+|||+|||-+||||+|.|++|||||+|.+...||||+||.||.|.+++.+-
T Consensus 297 HG-----Dm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvain 368 (400)
T KOG0328|consen 297 HG-----DMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAIN 368 (400)
T ss_pred cC-----CcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEE
Confidence 99 9999999999999999999999999999999999999999999999999999999999999999966553
|
|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=384.58 Aligned_cols=327 Identities=20% Similarity=0.258 Sum_probs=259.3
Q ss_pred chhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhh-hcCCCcEEEEEeCChhHHHHHHH
Q 000174 292 KSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQ-RQNKKMLAVFLVPKVPLVYQQAE 369 (1931)
Q Consensus 292 ~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~-~~~~~~~vL~LvPT~~Lv~Q~~~ 369 (1931)
....|....|..++.+|+.+|+.++. +++|.++.||||||++|+.|+++.+-+.. ....+--+|||.|||+|+.|+.+
T Consensus 80 t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFe 159 (758)
T KOG0343|consen 80 TLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFE 159 (758)
T ss_pred HHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHH
Confidence 44889999999999999999999999 99999999999999999999987765442 23455669999999999999999
Q ss_pred HHHH---HcCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcc-cccccceeEEEEeCCCcccCCCcHH
Q 000174 370 VIRE---QTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS-IIKMEAINLLILDECHHAVKKHPYS 445 (1931)
Q Consensus 370 ~l~~---~~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~-~l~l~~i~lLV~DEaH~~~~~~~~~ 445 (1931)
++.+ +.++..+++.||..+.. -...+...+|+|||||+|+.++... .+.-.++.+||+||||+|++ |+|.
T Consensus 160 vL~kvgk~h~fSaGLiiGG~~~k~-----E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LD-MGFk 233 (758)
T KOG0343|consen 160 VLNKVGKHHDFSAGLIIGGKDVKF-----ELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLD-MGFK 233 (758)
T ss_pred HHHHHhhccccccceeecCchhHH-----HHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHH-HhHH
Confidence 9987 45789999999976532 1223468999999999999999774 57889999999999999999 7999
Q ss_pred HHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchh
Q 000174 446 LVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAAS 525 (1931)
Q Consensus 446 ~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~ 525 (1931)
..+..++...|.. .+.|++|||+.. .+..|..+ .+..|..+.+. .....
T Consensus 234 ~tL~~Ii~~lP~~--RQTLLFSATqt~------------svkdLaRL----------------sL~dP~~vsvh-e~a~~ 282 (758)
T KOG0343|consen 234 KTLNAIIENLPKK--RQTLLFSATQTK------------SVKDLARL----------------SLKDPVYVSVH-ENAVA 282 (758)
T ss_pred HHHHHHHHhCChh--heeeeeecccch------------hHHHHHHh----------------hcCCCcEEEEe-ccccc
Confidence 9999999988764 789999999874 11122111 01222222111 00000
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHH
Q 000174 526 LWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAY 605 (1931)
Q Consensus 526 ~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~ 605 (1931)
.. ...
T Consensus 283 at--------------------------------------------------------------------P~~------- 287 (758)
T KOG0343|consen 283 AT--------------------------------------------------------------------PSN------- 287 (758)
T ss_pred cC--------------------------------------------------------------------hhh-------
Confidence 00 000
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccC
Q 000174 606 KVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSG 685 (1931)
Q Consensus 606 ~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~ 685 (1931)
T Consensus 288 -------------------------------------------------------------------------------- 287 (758)
T KOG0343|consen 288 -------------------------------------------------------------------------------- 287 (758)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCcccc
Q 000174 686 GEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMR 765 (1931)
Q Consensus 686 ~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~ 765 (1931)
+.+.+.......|+..|...++.+ ...|+|||+.+...+.++++.+..+. +|++...+|| .|+
T Consensus 288 -------L~Q~y~~v~l~~Ki~~L~sFI~sh---lk~K~iVF~SscKqvkf~~e~F~rlr--pg~~l~~L~G-----~~~ 350 (758)
T KOG0343|consen 288 -------LQQSYVIVPLEDKIDMLWSFIKSH---LKKKSIVFLSSCKQVKFLYEAFCRLR--PGIPLLALHG-----TMS 350 (758)
T ss_pred -------hhheEEEEehhhHHHHHHHHHHhc---cccceEEEEehhhHHHHHHHHHHhcC--CCCceeeecc-----chh
Confidence 000000112345777777777664 46799999999999999999999874 7899999999 999
Q ss_pred HHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 766 TFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 766 ~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
|..|.++..+|-....-||+||||++||||+|.||+||+||.|.++.+||||+||++|.+..
T Consensus 351 Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~ 412 (758)
T KOG0343|consen 351 QKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKER 412 (758)
T ss_pred HHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCC
Confidence 99999999999999999999999999999999999999999999999999999999996544
|
|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=391.55 Aligned_cols=333 Identities=20% Similarity=0.248 Sum_probs=260.6
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhh-------cCCCcEEEEEeCChhHHH
Q 000174 294 EAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQR-------QNKKMLAVFLVPKVPLVY 365 (1931)
Q Consensus 294 ~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~-------~~~~~~vL~LvPT~~Lv~ 365 (1931)
.+++..++..|+|||+.+++.+.. ++.++||+||||||.+|++||...+..... ....++++||+||++||.
T Consensus 87 ~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~ 166 (482)
T KOG0335|consen 87 GNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVD 166 (482)
T ss_pred hccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhh
Confidence 678889999999999999999999 999999999999999999999877765421 112478999999999999
Q ss_pred HHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCC
Q 000174 366 QQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKH 442 (1931)
Q Consensus 366 Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~ 442 (1931)
|++++.+++. +.++...+|+.... .+......+++|+|+||++|.+.++.+.+.|.++.++|||||++|++.+
T Consensus 167 Qi~nea~k~~~~s~~~~~~~ygg~~~~----~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~m 242 (482)
T KOG0335|consen 167 QIYNEARKFSYLSGMKSVVVYGGTDLG----AQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEM 242 (482)
T ss_pred HHHHHHHhhcccccceeeeeeCCcchh----hhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhc
Confidence 9999999975 57788888885543 3334455799999999999999999999999999999999999999989
Q ss_pred cHHHHHHHHHhhcCC--CCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHh--cCCeEEEecchHHHhhhCCCCceeEE
Q 000174 443 PYSLVMSEFYHTTSK--EKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESK--LDSVVCTIKDRKELEKHVPMPSEVVV 518 (1931)
Q Consensus 443 ~~~~im~~~~~~~~~--~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~--l~~~i~t~~~~~~l~~~~~~p~e~~~ 518 (1931)
+|...|+.+...... ....+.+++|||-.. .+..+-.. .+..+. +
T Consensus 243 gF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~------------~iq~l~~~fl~~~yi~-------------------l 291 (482)
T KOG0335|consen 243 GFEPQIRKIVEQLGMPPKNNRQTLLFSATFPK------------EIQRLAADFLKDNYIF-------------------L 291 (482)
T ss_pred cccccHHHHhcccCCCCccceeEEEEeccCCh------------hhhhhHHHHhhccceE-------------------E
Confidence 999999998876533 345788999999331 11111110 000000 0
Q ss_pred EeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHH
Q 000174 519 EYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGE 598 (1931)
Q Consensus 519 ~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~ 598 (1931)
....
T Consensus 292 aV~r---------------------------------------------------------------------------- 295 (482)
T KOG0335|consen 292 AVGR---------------------------------------------------------------------------- 295 (482)
T ss_pred EEee----------------------------------------------------------------------------
Confidence 0000
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccccc
Q 000174 599 LGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELL 678 (1931)
Q Consensus 599 lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~ 678 (1931)
.|
T Consensus 296 vg------------------------------------------------------------------------------ 297 (482)
T KOG0335|consen 296 VG------------------------------------------------------------------------------ 297 (482)
T ss_pred ec------------------------------------------------------------------------------
Confidence 00
Q ss_pred ccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCC-C-----CceEEEEEeehhHHHHHHHHHhcCCCCCCcee
Q 000174 679 DSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHT-E-----DFRAIIFVERVVAALVLPKVFAELPSLSFVKS 752 (1931)
Q Consensus 679 ~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~-~-----~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~ 752 (1931)
...+.+.+.+.......|...|+++|...... . ..+++|||+++..|..|+.+|.. .++++
T Consensus 298 ---------~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~----~~~~~ 364 (482)
T KOG0335|consen 298 ---------STSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSS----NGYPA 364 (482)
T ss_pred ---------cccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhc----CCCCc
Confidence 00000111111223356777777777654211 2 24899999999999999999998 78999
Q ss_pred EEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--EEE
Q 000174 753 ASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--YIL 830 (1931)
Q Consensus 753 ~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~iv 830 (1931)
..||| +.++.+|.++|+.|++|.+.+||||+|++||||||+|.+||+||+|.+..+|+||+|||||.|.. .+.
T Consensus 365 ~sIhg-----~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~ats 439 (482)
T KOG0335|consen 365 KSIHG-----DRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATS 439 (482)
T ss_pred eeecc-----hhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEE
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999977 444
Q ss_pred EEe
Q 000174 831 MIE 833 (1931)
Q Consensus 831 lv~ 833 (1931)
|+.
T Consensus 440 f~n 442 (482)
T KOG0335|consen 440 FFN 442 (482)
T ss_pred Eec
Confidence 554
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=421.15 Aligned_cols=333 Identities=22% Similarity=0.284 Sum_probs=256.5
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK 360 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT 360 (1931)
+|.+.+..+...+++.+++|.+|+|+|.++++.+++ +|+|+.++||||||++|++|+.+.+.. ....+++||||||
T Consensus 7 ~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~---~~~~~~~LIL~PT 83 (629)
T PRK11634 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDP---ELKAPQILVLAPT 83 (629)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhh---ccCCCeEEEEeCc
Confidence 345555444566899999999999999999999999 999999999999999999998877653 2345689999999
Q ss_pred hhHHHHHHHHHHHHc----CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCC
Q 000174 361 VPLVYQQAEVIREQT----GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECH 436 (1931)
Q Consensus 361 ~~Lv~Q~~~~l~~~~----~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH 436 (1931)
++|+.|+++++..+. ++.+..++|+...+. +......+++|||+||++|++++.++.+.++++.+|||||||
T Consensus 84 reLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~----q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd 159 (629)
T PRK11634 84 RELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDV----QLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD 159 (629)
T ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHH----HHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH
Confidence 999999999988764 688888899865432 222333579999999999999999999999999999999999
Q ss_pred cccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCcee
Q 000174 437 HAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEV 516 (1931)
Q Consensus 437 ~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~ 516 (1931)
+++. +.|...+..++...+. ..+++++|||... .+..+.. .+...|..+
T Consensus 160 ~ml~-~gf~~di~~Il~~lp~--~~q~llfSAT~p~------------~i~~i~~----------------~~l~~~~~i 208 (629)
T PRK11634 160 EMLR-MGFIEDVETIMAQIPE--GHQTALFSATMPE------------AIRRITR----------------RFMKEPQEV 208 (629)
T ss_pred HHhh-cccHHHHHHHHHhCCC--CCeEEEEEccCCh------------hHHHHHH----------------HHcCCCeEE
Confidence 9987 4777777777766554 3788999999642 1111111 112222211
Q ss_pred EEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHH
Q 000174 517 VVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYAL 596 (1931)
Q Consensus 517 ~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l 596 (1931)
.+......
T Consensus 209 ~i~~~~~~------------------------------------------------------------------------ 216 (629)
T PRK11634 209 RIQSSVTT------------------------------------------------------------------------ 216 (629)
T ss_pred EccCcccc------------------------------------------------------------------------
Confidence 11000000
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccc
Q 000174 597 GELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGE 676 (1931)
Q Consensus 597 ~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 676 (1931)
...+..
T Consensus 217 ------------------------------------------------------------------------~~~i~q-- 222 (629)
T PRK11634 217 ------------------------------------------------------------------------RPDISQ-- 222 (629)
T ss_pred ------------------------------------------------------------------------CCceEE--
Confidence 000000
Q ss_pred ccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEE
Q 000174 677 LLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLI 756 (1931)
Q Consensus 677 l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~ 756 (1931)
.........|...|..+|... ...++||||+++..+..|++.|.. .++.+..+|
T Consensus 223 -------------------~~~~v~~~~k~~~L~~~L~~~---~~~~~IVF~~tk~~a~~l~~~L~~----~g~~~~~lh 276 (629)
T PRK11634 223 -------------------SYWTVWGMRKNEALVRFLEAE---DFDAAIIFVRTKNATLEVAEALER----NGYNSAALN 276 (629)
T ss_pred -------------------EEEEechhhHHHHHHHHHHhc---CCCCEEEEeccHHHHHHHHHHHHh----CCCCEEEee
Confidence 000001124666677776543 346899999999999999999988 678999999
Q ss_pred ccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEE
Q 000174 757 GHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYI 829 (1931)
Q Consensus 757 G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~i 829 (1931)
| +|++.+|++++++|++|+++|||||+|+++|||+|+|++||+||+|.++.+|+||+|||||.|..+.
T Consensus 277 g-----d~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ 344 (629)
T PRK11634 277 G-----DMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGR 344 (629)
T ss_pred C-----CCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcce
Confidence 9 9999999999999999999999999999999999999999999999999999999999999998633
|
|
| >COG0571 Rnc dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=376.57 Aligned_cols=215 Identities=37% Similarity=0.500 Sum_probs=194.2
Q ss_pred hHHHHHHHcCCCcCCHHHHHHHhcCCCCCCC--CCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChH
Q 000174 1591 DFHALEDALKIKFKDRGLLVEAITHASRPSS--GVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNE 1668 (1931)
Q Consensus 1591 ~~~~le~~lgy~F~~~~LL~~AlTH~S~~~~--~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~ 1668 (1931)
.+..|++.|||+|+|+.||.+||||+||.+. ...+||||||||||||+++|++|||++||++++|.||.+|+.+||++
T Consensus 7 ~~~~l~~~lg~~f~~~~lL~~AltH~S~~~e~~~~~~nERLEFLGDavL~l~vae~Lf~~yP~~~EG~Ls~~ra~lV~~~ 86 (235)
T COG0571 7 KLEALEKKLGYTFKDKELLEQALTHRSYANEHKAVENNERLEFLGDAVLGLVVAEYLFKKYPNLPEGELSKLRAALVSEE 86 (235)
T ss_pred HHHHHHHHhCCCcCCHHHHHHHhcCcchhccccCCcchHHHHhhHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999754 45799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCchhhhccCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCceeEEe
Q 000174 1669 NFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQ 1748 (1931)
Q Consensus 1669 ~La~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~~~v~~ 1748 (1931)
+|+.+|..+||++||+.++++.. .++...+++++|+|||+|||||+|+|++ .+++
T Consensus 87 ~La~ia~~l~l~~~l~lg~ge~~-----------------------~gg~~~~silaD~~EAligAiylD~g~~--~~~~ 141 (235)
T COG0571 87 SLAEIARELGLGDYLRLGKGEEK-----------------------SGGRRRESILADAFEALIGAIYLDSGLE--AARK 141 (235)
T ss_pred HHHHHHHHhCccchhhccCChhh-----------------------cCCCCchhHHHHHHHHHHHHHHHhCChH--HHHH
Confidence 99999999999999999999864 3567889999999999999999999944 6778
Q ss_pred eeccCCCCCCCCC---CCCCCChHHHHHHHHhhcCC-ceeEEecc-C----CeEEEEEEECCEEEEEeecCCHHHHHHHH
Q 000174 1749 VFQPLLDPMVTPE---TLPMHPVRELQERCQQQAEG-LEYKASRS-G----NLATVEVYIDGVQVGVAQNPQKKMAQKLA 1819 (1931)
Q Consensus 1749 ~~~~~l~~~i~~~---~~~~~P~~~L~e~~~~~~~~-~~y~~~~~-g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~A 1819 (1931)
|+.+++.+.+... ...++|++.||||+|+++.. |.|++... | +.|++.|.|+|..+++|.|.|||+|++.|
T Consensus 142 ~i~~l~~~~~~~~~~~~~~~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G~G~skk~AEq~A 221 (235)
T COG0571 142 FILKLFLPRLEEIDAGDQFKDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGRSKKEAEQAA 221 (235)
T ss_pred HHHHHHHHHHhhccccccccChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEecccCHHHHHHHH
Confidence 8999998876642 23489999999999998876 49997654 4 47999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 000174 1820 ARNALAVLKEK 1830 (1931)
Q Consensus 1820 A~~AL~~L~~~ 1830 (1931)
|+.||..|...
T Consensus 222 A~~al~~l~~~ 232 (235)
T COG0571 222 AEQALKKLGVK 232 (235)
T ss_pred HHHHHHHhccc
Confidence 99999998754
|
|
| >KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-42 Score=453.28 Aligned_cols=1068 Identities=24% Similarity=0.302 Sum_probs=589.7
Q ss_pred HcCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCC-CcHHHHHHHHH
Q 000174 374 QTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKK-HPYSLVMSEFY 452 (1931)
Q Consensus 374 ~~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~-~~~~~im~~~~ 452 (1931)
.....+.-.++......|....|...+...++.+.|+..+++++..+++.+....++++||||++... +++...|....
T Consensus 10 ~~~~~~l~~~~~e~~~~~~s~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (1606)
T KOG0701|consen 10 HTPLKVLEVFPLESRGLSTSKRHKQECTHHHVSILTAIGALNLLFGGYLLLSDRVLLVFDECHNLVMDAHPRRHFMDLSS 89 (1606)
T ss_pred ccccccccccccccccccchhhhhhhhhhcccchhhhhhhhhhhcCchhhhhhhhhhccccccccccccCcchhhhhccc
Confidence 34455555566666666765588888899999999999999999999999999999999999999975 66666665444
Q ss_pred hhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhhhHHHHH
Q 000174 453 HTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQ 532 (1931)
Q Consensus 453 ~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~ 532 (1931)
. .+....|+++|+||.+.+.+. ..+.....+..++......+.+..+...+.++...|.++++..-..
T Consensus 90 ~-~~~~s~pr~~~~~a~~~~~~~--~~~~~~~~~k~~e~~~~~~~~t~~~~v~~~~~t~~~~~vm~~~~~~--------- 157 (1606)
T KOG0701|consen 90 S-GPSFSVPRILGLTASLLNDKF--WLEELDEDLKKLEYLSESRIETASDLVSLVRYTSNPFEVMVCCLDA--------- 157 (1606)
T ss_pred c-cCCCCcchhhhccCCCcCCCc--chhhhhHHHHHHHHHHHhChhhhccceEeeeccCCCeEEeeehhhh---------
Confidence 3 333567999999999887543 4455667788888888888888877777778888888887654110
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000174 533 LKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFL 612 (1931)
Q Consensus 533 i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l 612 (1931)
.+.+... ....++- ....+... -.-.+........+...|+||..+++....
T Consensus 158 ------~~~~~~~-----~~~~~~~--------------~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 209 (1606)
T KOG0701|consen 158 ------EYGPLLI-----NKDKLIC--------------VFLIPDCI---VITFQKQYTLLKVLFKKGPWCSVKWIAQDV 209 (1606)
T ss_pred ------hhhhhhc-----cccceeE--------------EeccCcce---eeeccccchhhhhhcccCcchhhHHHHHHH
Confidence 0111100 0000000 00000000 000011111222345678888877776555
Q ss_pred HHhhhhhhhhhh----hhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCc
Q 000174 613 TALQNDERANYQ----LDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEH 688 (1931)
Q Consensus 613 ~~l~~~~~~~~~----~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~ 688 (1931)
..+..-...... ....|...-++.....-. ....+.- ..++.....+.. . ......
T Consensus 210 ~e~~~~~~~~~~~~~~~~e~f~~~~~~~~~~~~~-~~~~~~~----------------~~~~~~~~~e~~--~-~~~~~~ 269 (1606)
T KOG0701|consen 210 RELPKVIAGNPAELHYCEEVFSDSELRFLMSIPR-LLERLRD----------------SKHEYIHQFEVL--R-KYEPHD 269 (1606)
T ss_pred hhcceeecCCHHHhhhhhhhcCcHHHHHHHhHHH-HHHHhhh----------------cchhhhccccee--e-eecccc
Confidence 544321111000 000010000000000000 0000000 000000000000 0 000000
Q ss_pred hhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCc------
Q 000174 689 VDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQ------ 762 (1931)
Q Consensus 689 ~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~------ 762 (1931)
...++. . .....-.|. .|.+ .....+||||+.+.++..+.+++++. ....+..+.|.....
T Consensus 270 ~~~l~~-~-~~~~~v~k~-----~l~~---~~~l~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~k~~~ 336 (1606)
T KOG0701|consen 270 VFRLIH-E-SVCPLVDKE-----YLEK---IETLSGIIFVDQRYTAYVLLELLREI---FSNDPLFVTGASGANLWKSFK 336 (1606)
T ss_pred cceeeh-h-hcCchhhHH-----HHHh---hhhhhheeecccchHHHHHHHHHHHh---hccCcceeeccccCccchhhH
Confidence 000010 0 000000111 2222 23467999999999999999999885 334556677743221
Q ss_pred cccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEEEEecCChhHHHH
Q 000174 763 EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIERGNLSHATF 842 (1931)
Q Consensus 763 ~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ivlv~~~~~~~~~~ 842 (1931)
......|.+++..|+..++|+|++|++++||+|++.|+.||.+|.|.....|+|+.||+++.++.++++..+.+. ..
T Consensus 337 ~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~vq~~~r~~~~~~~~~i~~~t~~~---~~ 413 (1606)
T KOG0701|consen 337 NELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKCNLVVLFDAPTYYRSYVQKKGRARAADSYLVILGETLSA---VS 413 (1606)
T ss_pred HHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhhhhheeccCcchHHHHHHhhcccccchhhHHHHHhhhhh---hh
Confidence 112345889999999999999999999999999999999999999999999999999999999998887654331 11
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCccceeCCCCcEEcccchHHHHHHHhhcCCCCCCCccCceEEE
Q 000174 843 LRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAVPGTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIM 922 (1931)
Q Consensus 843 l~~~~~~e~~l~~~~i~r~~l~~~~~~~~~~~~~~~~~~~y~v~~tgA~lt~~~Ai~ll~~yC~~Lp~d~~~~~~P~~~~ 922 (1931)
+.. -... ....+.+. .+ +.....+ ++.||+..-.
T Consensus 414 ~~~--~s~~--~~~~i~~~---------~l----------~~~~~~~-----------v~~~~~~~e~------------ 447 (1606)
T KOG0701|consen 414 LKN--PSYA--YTEQIPRP---------QL----------FLRLDAN-----------VNKYCARAEL------------ 447 (1606)
T ss_pred hcC--hhHh--HHhhcccc---------hh----------hcccccc-----------hHHHHHHHHh------------
Confidence 111 0000 00111110 00 1111111 7889984311
Q ss_pred EecCCCCCCceEEEEEEcCCCCCCC-cccCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCcc---cccccCC
Q 000174 923 ERHEKPGGPTEYSCKLQLPCNAPFE-KLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEQ---QEKVDQN 998 (1931)
Q Consensus 923 ~~~~~~~~~~~~~~~v~LP~~~p~~-~~~g~~~~sk~~Akr~AAf~Ac~~L~~~G~ldd~L~P~~~~~~~---~~~~~~~ 998 (1931)
.....+..+|.||.++|.+ .+.| +|.+||++|++||+|+|.+..... ....++.
T Consensus 448 ------~~~~~~~~~v~~~~~~p~~~~~~~----------------~~~~l~~~~~~d~~~~~~gk~~~~~~~~~~~~~~ 505 (1606)
T KOG0701|consen 448 ------LKHVPFLSTVVLPVNSPLKMCIVG----------------LCLKLHKIGELDDCLHPKGKEPKACLEEVDTEEE 505 (1606)
T ss_pred ------ccCCCcceeEEEecCchHHHHHHH----------------hHHHHHHhhhhhhhhcccccchHHhhhhhccccc
Confidence 1123566789999998865 2333 999999999999999996543311 1111222
Q ss_pred cC----CCCCCCCccccccccccccccccccccccCCCCCCCCcceeEEEEEeeecC-------C---------------
Q 000174 999 DE----GEPLPGTARHREFYPEGVADILQGEWILSGRDGCTGSKLFHLFMYTVKCVN-------N--------------- 1052 (1931)
Q Consensus 999 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~y~~~i~~~~-------~--------------- 1052 (1931)
++ -++.+++++++++|.+.++.....+.... ...+|.|.+...- .
T Consensus 506 ee~~~~~~~~~~~s~~~~~~~k~~~~~~~~~~~~~---------~~~c~~~~~~~~~~~~~~e~~n~~~r~~~~~~~~~~ 576 (1606)
T KOG0701|consen 506 EEVLQGFEPRPGSSKRRQQYLKHIARERNDSVPKA---------DQPCYLYVIGLELTMPLPEERNFERRKLYPPEDLTY 576 (1606)
T ss_pred hhhccccCCCCCcccccccccchhHHHhcccccCC---------CCceeeeeeccceecCCchhcccccccccCchhhhh
Confidence 22 24678999999999987765554443322 2356666543221 0
Q ss_pred --CCCCCCccccccceeEeeccc---------------chHHHHHHHHHHHHHHHhhhccccCCCCCCCCC---CceEEE
Q 000174 1053 --GISKDPFLTQVSDFAVLFSSE---------------LDAELASLKNFHVRLMSIVLDVDVEPYTTPWDP---AKAYLF 1112 (1931)
Q Consensus 1053 --~~~~~~~~~~~~~~~l~~~~~---------------l~~~~~~l~~f~~~~~~~v~~~~~~~~~~~~~~---~~~yl~ 1112 (1931)
|..+-..+++.+.|++++... .++.+.....|+.++|..++... .....+++ ...+.+
T Consensus 577 ~~~~l~~~~i~~~~~~~~a~~sG~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~--~~~~~~~~~~~~l~~~l 654 (1606)
T KOG0701|consen 577 CFGILTAKLIPKIPHFPVATRSGEVKVSLLLAFSEALVKSEQLDEIQEFLNYIFTEVLRLA--KINLEFDPKTAELIETL 654 (1606)
T ss_pred hhcccchhhhcccccccceeccCchhHHHHHhhhhhhcchhhccCcchhcccchhhhhhhh--ccccccCCchhhHHHHh
Confidence 000001134455555554210 01123445568888887766521 11111222 234677
Q ss_pred EecccCCCCCCCCccchhhHhhhhccCCCCCccccCCCCcccCccccccCCCcccccccccccccccCccCCCCcccccc
Q 000174 1113 VPVVSDKSVDPMNELDWDLVEKITKTDAWTNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGA 1192 (1931)
Q Consensus 1113 ~P~~~~~~~~~~~~idw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1192 (1931)
+|.+.... .-...|+|..|+.++.......+
T Consensus 655 lp~~~~~~-~~~~~i~~k~l~~iv~~~~~~~~------------------------------------------------ 685 (1606)
T KOG0701|consen 655 LPLNVLAD-KRAIIIVRKFLEAIVAPSDLMPI------------------------------------------------ 685 (1606)
T ss_pred cccccccc-cchhhhHHHHHHHHhCcccccCC------------------------------------------------
Confidence 88653321 11246888888876543211000
Q ss_pred cchhhhhhccCCCCchhhhhhcccCCCccccccccccCCccccCCcEEEcccCC---CeEEEEeeccCCCCCCCCCCCCC
Q 000174 1193 IAQFDVVKASGLVPDREAMQIHNADMPTGKLMMADSCANAGDLEGRIVTAAHSG---KRFYVESIRYEMTAESSFPRKEG 1269 (1931)
Q Consensus 1193 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~vv~~~~~~---~~y~v~~v~~dltp~s~fp~~~g 1269 (1931)
|..+-.. + -.++..+++.+++++ |.+ ..||+..|.....|.|.||..
T Consensus 686 -------------~~~~~~~---------~----~~~f~~~~~~~~~~~--~rn~~~~~~~~~~v~~~~~pss~~~g~-- 735 (1606)
T KOG0701|consen 686 -------------PSKDEVR---------K----AKYFDGEDSQDAVGM--YRNDDQPQFYVAEVLPLLAPSSLFPGL-- 735 (1606)
T ss_pred -------------CChhhhh---------h----hhhcccccchhhhhh--hhcccccceeeeeeeeeccchhcCCCc--
Confidence 0000000 0 001233444555555 322 246899999999999999966
Q ss_pred CCCCCccccHHHHHHhhcCccccCCCCceEEeeccccccccCCCccccccccccc--cc--cccccceEEEcCCcccccc
Q 000174 1270 YLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYCKNLLSPRFEHSEEQEGE--GE--EILDKTYYVFLPPELCFIH 1345 (1931)
Q Consensus 1270 ~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL~~~~~~~~~n~l~~~~~~~~~~~~~--~~--~~~~k~~~~~L~Pelc~v~ 1345 (1931)
.|.++..||..+|...+....||++.++..+.+.|++.|+.....+.... +. +..... .+ -.--.++
T Consensus 736 -----~~~~~~~v~~~~~~~~i~~~~q~~~~~~~~~s~l~~~~~r~~~~~~~~l~~~s~~~e~~~~e---s~-~~~~~~h 806 (1606)
T KOG0701|consen 736 -----DYETFNEVYRFKYALTITSLNQSLLDVDHTSSRLNLLVPRGDNQKGSALPNSSSETERLKDE---SL-EHSLIIH 806 (1606)
T ss_pred -----chheeeeeeeccccchhhhccccccccccchhhhcccCchhhccccceeecccchhhhhhHH---Hh-hccCCCC
Confidence 68899999999999999999999999999999999999987654332210 00 000000 00 0112278
Q ss_pred cCChHHHHHhhchhhHHHHHHHHHHHHHHhhhcCCC-CChh--HHH-HHhccccCCCCCCCcchhhhhhhhHHHHHHHHH
Q 000174 1346 PLPGSLVRGAQRLPSIMRRVESMLLAIQLKDKINYP-VPAS--KIL-EALTAASCQETFCYERAELLGDAYLKWVVSRFL 1421 (1931)
Q Consensus 1346 ~lp~~~~~~~~~lPsi~~rl~~~l~a~~l~~~l~~~-~~~~--~ll-~AlT~~s~~~~~nyERLE~LGDs~Lk~~~s~~l 1421 (1931)
+.+++.|+.+.++|.+++|++ +.+..++...-+. ++.. .++ .++-..+.....|+. .|....++
T Consensus 807 ~~~~s~~~~~~~~p~~v~~v~--~tg~~~s~~ta~~li~~~~~~i~~~~f~~~~~~~~~~~~----------~~~~~~~~ 874 (1606)
T KOG0701|consen 807 PALASLWRRAVCLPEILYRVL--LTGALVSLSTAVDLIPHDFSSILSKSFEKEASKSDKNKD----------EYSCDLAL 874 (1606)
T ss_pred cCcchhhhhhccCcchheeec--cccceeeeecccchhhhhhhhccchhhccccccCCCCcc----------ccceeecc
Confidence 999999999999999999983 2233322221111 0000 011 111111111111111 01111111
Q ss_pred HHhCCCCCCchhhHHHhhhhccHHHHHHHHHcCCccceeccccCCCCccCCCCCCcccCCCcCCCCccccccchhhhccc
Q 000174 1422 FLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKL 1501 (1931)
Q Consensus 1422 ~~~~p~~~eG~Ls~~R~~lVsN~~L~~~a~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1501 (1931)
=... ..+....+.=+-..+.+.|+. |.+.+.-.. . |. +
T Consensus 875 ~~~~------~~~~~~~~~~~~~~~~q~av~--l~~~~~~~~--~------~~---------~----------------- 912 (1606)
T KOG0701|consen 875 PKEN------PVKQVLGKANQLDKVNQQAVE--LQECIQLHE--V------GA---------L----------------- 912 (1606)
T ss_pred cCCC------chhhhhchhhhhhHHHhhhhh--hhhhhhhhc--c------cc---------c-----------------
Confidence 1111 112222222222333333332 111111000 0 00 0
Q ss_pred CCCcCCCCcCccccccCcccCCCCCccccccchhhhHHHHHhhheeeccCH-----------HHHHHHHhHhhccccCCC
Q 000174 1502 GTDKNYNEYEDDDMEDGELEGDSSSYRVLSSKTLADVVEALIGVYYVEGGK-----------DAANHLMKWIGIQVESDP 1570 (1931)
Q Consensus 1502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADvvEALiGA~~l~~G~-----------~~a~~~~~~l~i~~~~~~ 1570 (1931)
.-+.+.+|..++-++|--+-+++..-. .-+..+...++ +
T Consensus 913 ------------------------~d~~~~n~~~~~~~~~~~~~i~~a~~p~~~~~~~~~~~~~s~~~~n~l~------~ 962 (1606)
T KOG0701|consen 913 ------------------------DDHLVFNKGVADQVLAKRESISLATRPELVSPFIPEPPTTSHLISNRLS------P 962 (1606)
T ss_pred ------------------------ccccccCccccchhhhhccccccccCcccccccccCCchhhhhhhhhcC------c
Confidence 001122333333333322212111111 00000000100 0
Q ss_pred CcCCCCCCCCCCCcccc--chhhHHHHHHHcC--CCcCCH--------HHHHHHhcCCCCCCCCCCCchhHHHHHHHHHH
Q 000174 1571 EEVGCPSRPACVPESVL--RSVDFHALEDALK--IKFKDR--------GLLVEAITHASRPSSGVSCYQRLEFVGDAVLD 1638 (1931)
Q Consensus 1571 ~~~~~~~~~~~~p~~~~--~~~~~~~le~~lg--y~F~~~--------~LL~~AlTH~S~~~~~~~~yeRLEfLGDavLd 1638 (1931)
. .... ..+.+.. ...+.+.+|+++. |.|.++ .+|.+||||+++. ...+|||||+|||++|.
T Consensus 963 ~----~~~~-~~~~s~~~~~~~~~E~~e~i~n~~~~Fs~~~~~i~~~~s~LLEAlT~~~~~--~s~s~Erle~Lgds~Lk 1035 (1606)
T KOG0701|consen 963 S----SPSN-SDLNSLLPNKRSDWEAVEKILNFRYVFSISLASIALSTSLLLEALTTSSCQ--DSFSLERLELLGDSLLK 1035 (1606)
T ss_pred c----CCCC-CCcccccccccccccccccccccceeccccccccccchhHHHHHhhcCccc--cchhHHHHHhhHHHHHH
Confidence 0 0000 0001111 1234688999999 999999 9999999999986 44799999999999999
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHhhChHHHHHHHHHcCchhhhccC--Cch---------------------------
Q 000174 1639 HLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHG--SSA--------------------------- 1689 (1931)
Q Consensus 1639 ~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~La~~a~~~gl~~~l~~~--~~~--------------------------- 1689 (1931)
+.+++|||.+||+..||+|+.+|+.+++|+.|+.+|+..||..+++++ -+.
T Consensus 1036 ~avsr~l~L~ypd~~Egqls~lr~~~~~~~nl~~la~~~gl~~~~~~~~fep~~~~~p~~~~~~~~~~k~~~~~~~~~~~ 1115 (1606)
T KOG0701|consen 1036 LAVSRHLFLTYPDLDEGQLSRLRDVNVSNDNLARLAVKKGLYSYLRHEGFEPSRWWVPGQLDVNNVDCKDLSGDQNYILY 1115 (1606)
T ss_pred HHHHHHHHHhCCcccchhHHHHHHhcccccchhhhhhcccchhhcccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999987 222
Q ss_pred --hHHHHHHHHHHHHHhhcCCCCCCCCC--CCCCCCchHHHHHHHHHhHhhccccCCceeEEeeeccCCCCCCCC----C
Q 000174 1690 --LDRQIRDFVKEVLEELLKPGFNSFGL--GDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMVTP----E 1761 (1931)
Q Consensus 1690 --~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~k~l~D~fEAiiGAiylDsg~~~~~v~~~~~~~l~~~i~~----~ 1761 (1931)
....+..|........ +...... .....||.++|++||++||+|+|.|+...... +...+|+..+.. .
T Consensus 1116 ~e~~e~~~df~e~~~~~~---~~~~~~~~~~~~~~~ks~adl~eaLlga~~vD~~~~~~~~~-~~~~~lk~~~~~~dy~~ 1191 (1606)
T KOG0701|consen 1116 KELDEKIKDFQEAMEKED---GDSRSKGGDHDWLAPKSPADLLEALLGAIYVDGGLLETFET-IGDSFLKWSITNYDYDT 1191 (1606)
T ss_pred cchhhhhhHHHHhhhccC---CcccccccccceecCCCHHHHHHHHHHhhhhhccchhhhhH-HHHHHHhhhhhhhhhhc
Confidence 2233333333222111 1111111 25678999999999999999999998765311 234444433221 1
Q ss_pred CCCCCChHHHHHHHHhhc
Q 000174 1762 TLPMHPVRELQERCQQQA 1779 (1931)
Q Consensus 1762 ~~~~~P~~~L~e~~~~~~ 1779 (1931)
..++++.-.+.-++....
T Consensus 1192 ~e~~~~~~~~~~~s~~~~ 1209 (1606)
T KOG0701|consen 1192 LEPKHAGKLSFRRSKIVK 1209 (1606)
T ss_pred ccccchhhhhhhhhhHhh
Confidence 234566655555554433
|
|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=384.54 Aligned_cols=380 Identities=19% Similarity=0.216 Sum_probs=261.6
Q ss_pred ccccCCCCcchhhh-hcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhh---cCCCcEEEEE
Q 000174 283 QECNGKVGKKSEAK-EKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQR---QNKKMLAVFL 357 (1931)
Q Consensus 283 ~~~~~~~~~~~~~l-~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~---~~~~~~vL~L 357 (1931)
+.+.+.-+.....+ .++.+..||.+|+++||.+++ +|++|.++||||||++|++||.+.++.+.. ...+..+|||
T Consensus 138 f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVi 217 (708)
T KOG0348|consen 138 FASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVI 217 (708)
T ss_pred chhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEE
Confidence 33444443333333 347899999999999999999 999999999999999999999999887653 3557889999
Q ss_pred eCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhc-ccccccceeEEEEeCCC
Q 000174 358 VPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH-SIIKMEAINLLILDECH 436 (1931)
Q Consensus 358 vPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~-~~l~l~~i~lLV~DEaH 436 (1931)
||||+||.|.++.++++..--.+++-|..-..+.++.+..++.++++|+|+|||+|+|+|.+ ..+.+.++.+|||||||
T Consensus 218 vPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaD 297 (708)
T KOG0348|consen 218 VPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEAD 297 (708)
T ss_pred echHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchh
Confidence 99999999999999998754444444443334445667777889999999999999999988 56889999999999999
Q ss_pred cccCCCcHHHHHHHHHhhcCC--------CC---CcEEEEEeecCCCCCCCCchhHHHHHHHHHHHh-cCCeEEEecchH
Q 000174 437 HAVKKHPYSLVMSEFYHTTSK--------EK---RPSVFGMTASPVNLKGVSSQVDCAIKICNLESK-LDSVVCTIKDRK 504 (1931)
Q Consensus 437 ~~~~~~~~~~im~~~~~~~~~--------~~---~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~-l~~~i~t~~~~~ 504 (1931)
++++ .+|.+.+..++..... .. +.+.++||||... .+..|... |+..++.-
T Consensus 298 rlle-LGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd------------~V~rLa~~sLkDpv~I~---- 360 (708)
T KOG0348|consen 298 RLLE-LGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTD------------GVNRLADLSLKDPVYIS---- 360 (708)
T ss_pred HHHh-ccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHH------------HHHHHhhccccCceeee----
Confidence 9998 5888887777765411 01 1356899999653 22223221 22111111
Q ss_pred HHhhhCCCCceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHH
Q 000174 505 ELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAAN 584 (1931)
Q Consensus 505 ~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~ 584 (1931)
.+... ..+..-...+.+. .
T Consensus 361 ---------------ld~s~------~~~~p~~~a~~ev---------------------------~------------- 379 (708)
T KOG0348|consen 361 ---------------LDKSH------SQLNPKDKAVQEV---------------------------D------------- 379 (708)
T ss_pred ---------------ccchh------hhcCcchhhhhhc---------------------------C-------------
Confidence 11100 0000000000000 0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhccccccccccccccccc
Q 000174 585 LIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGF 664 (1931)
Q Consensus 585 l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~ 664 (1931)
-++. +.. + .
T Consensus 380 --------------~~~~-~~~------------------l--------------------------------------~ 388 (708)
T KOG0348|consen 380 --------------DGPA-GDK------------------L--------------------------------------D 388 (708)
T ss_pred --------------Cccc-ccc------------------c--------------------------------------c
Confidence 0000 000 0 0
Q ss_pred ccCCccccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHh-cCCCCceEEEEEeehhHHHHHHHHHhc
Q 000174 665 VEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKY-QHTEDFRAIIFVERVVAALVLPKVFAE 743 (1931)
Q Consensus 665 ~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~-~~~~~~k~IIFv~~r~ta~~L~~~L~~ 743 (1931)
.-...+.|.+.+. .....-++..|..+|... ......|+|||..+.+.+++.+.+|..
T Consensus 389 ~~~iPeqL~qry~---------------------vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~ 447 (708)
T KOG0348|consen 389 SFAIPEQLLQRYT---------------------VVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSE 447 (708)
T ss_pred cccCcHHhhhceE---------------------ecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHh
Confidence 0000111111111 001122444555555543 334556999999999999999998875
Q ss_pred C------------------CCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEc
Q 000174 744 L------------------PSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRF 805 (1931)
Q Consensus 744 ~------------------~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~f 805 (1931)
. +.+.+.++..+|| +|+|.+|..+++.|+..+-.||+||||++||||+|+|.+||.|
T Consensus 448 ~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHG-----sm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQY 522 (708)
T KOG0348|consen 448 ALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHG-----SMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQY 522 (708)
T ss_pred hhhcccccccCCcccCCChhhhhcceEEEecC-----chhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEe
Confidence 2 0113467889999 9999999999999998888899999999999999999999999
Q ss_pred CCCCCHHHHHHhhccCCCCCCc--EEEEEecCCh
Q 000174 806 DLAKTVLAYIQSRGRARKPGSD--YILMIERGNL 837 (1931)
Q Consensus 806 D~p~s~~~yiQr~GRa~R~Gs~--~ivlv~~~~~ 837 (1931)
|+|.++.+|+||+||++|+|.+ .++|+.+.+.
T Consensus 523 d~P~s~adylHRvGRTARaG~kG~alLfL~P~Ea 556 (708)
T KOG0348|consen 523 DPPFSTADYLHRVGRTARAGEKGEALLFLLPSEA 556 (708)
T ss_pred CCCCCHHHHHHHhhhhhhccCCCceEEEecccHH
Confidence 9999999999999999999877 5666665543
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=419.31 Aligned_cols=338 Identities=18% Similarity=0.226 Sum_probs=255.8
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhh----cCCCcEEEE
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQR----QNKKMLAVF 356 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~----~~~~~~vL~ 356 (1931)
.|.+.+..+...+.+.+.++..|+|+|.++|+.+++ +|+|+.++||||||++|++|+.+.+..... .....++||
T Consensus 10 ~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLI 89 (572)
T PRK04537 10 TFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALI 89 (572)
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEE
Confidence 355555555566899999999999999999999999 999999999999999999998876643211 112468999
Q ss_pred EeCChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcc-cccccceeEEEE
Q 000174 357 LVPKVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS-IIKMEAINLLIL 432 (1931)
Q Consensus 357 LvPT~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~-~l~l~~i~lLV~ 432 (1931)
|+||++|+.|+++.+..+. ++++..++|+...+. .......+++|+|+||++|++++... .+.+..+++|||
T Consensus 90 l~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~----q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lVi 165 (572)
T PRK04537 90 LAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDK----QRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVL 165 (572)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHH----HHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEe
Confidence 9999999999999988764 688999999875432 11222357899999999999998764 578899999999
Q ss_pred eCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCC
Q 000174 433 DECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPM 512 (1931)
Q Consensus 433 DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~ 512 (1931)
||||++.+. .|...+..++...+.....+++++|||... .+..+.. .++..
T Consensus 166 DEAh~lld~-gf~~~i~~il~~lp~~~~~q~ll~SATl~~------------~v~~l~~----------------~~l~~ 216 (572)
T PRK04537 166 DEADRMFDL-GFIKDIRFLLRRMPERGTRQTLLFSATLSH------------RVLELAY----------------EHMNE 216 (572)
T ss_pred cCHHHHhhc-chHHHHHHHHHhcccccCceEEEEeCCccH------------HHHHHHH----------------HHhcC
Confidence 999999874 787777777776665445789999999652 1111110 11111
Q ss_pred CceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHH
Q 000174 513 PSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAI 592 (1931)
Q Consensus 513 p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~ 592 (1931)
|....+......
T Consensus 217 p~~i~v~~~~~~-------------------------------------------------------------------- 228 (572)
T PRK04537 217 PEKLVVETETIT-------------------------------------------------------------------- 228 (572)
T ss_pred CcEEEecccccc--------------------------------------------------------------------
Confidence 111111000000
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccc
Q 000174 593 NYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEI 672 (1931)
Q Consensus 593 ~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 672 (1931)
...+
T Consensus 229 ----------------------------------------------------------------------------~~~i 232 (572)
T PRK04537 229 ----------------------------------------------------------------------------AARV 232 (572)
T ss_pred ----------------------------------------------------------------------------ccce
Confidence 0000
Q ss_pred ccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCcee
Q 000174 673 EEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKS 752 (1931)
Q Consensus 673 ~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~ 752 (1931)
. +.+.......|+..|+.+|.. ....++||||+++..++.|++.|.. .++.+
T Consensus 233 ~---------------------q~~~~~~~~~k~~~L~~ll~~---~~~~k~LVF~nt~~~ae~l~~~L~~----~g~~v 284 (572)
T PRK04537 233 R---------------------QRIYFPADEEKQTLLLGLLSR---SEGARTMVFVNTKAFVERVARTLER----HGYRV 284 (572)
T ss_pred e---------------------EEEEecCHHHHHHHHHHHHhc---ccCCcEEEEeCCHHHHHHHHHHHHH----cCCCE
Confidence 0 000000112355556666543 3467899999999999999999988 57899
Q ss_pred EEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEE
Q 000174 753 ASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYI 829 (1931)
Q Consensus 753 ~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~i 829 (1931)
..+|| +|++.+|++++++|++|+++|||||+++++|||+|+|++||+||+|+++.+|+||+|||||.|..+.
T Consensus 285 ~~lhg-----~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ 356 (572)
T PRK04537 285 GVLSG-----DVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGD 356 (572)
T ss_pred EEEeC-----CCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCce
Confidence 99999 9999999999999999999999999999999999999999999999999999999999999998743
|
|
| >PRK12371 ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-41 Score=381.46 Aligned_cols=215 Identities=28% Similarity=0.358 Sum_probs=187.3
Q ss_pred hhHHHHHHHcCCCcCCHHHHHHHhcCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHH
Q 000174 1590 VDFHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNEN 1669 (1931)
Q Consensus 1590 ~~~~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~ 1669 (1931)
..+..||++|||+|+|+.||.+||||+||......+||||||||||||+++|++|||.+||++++|.||.+|+.+|||++
T Consensus 10 ~~~~~le~~lgy~F~~~~Ll~~AlTH~S~~~~~~~~~eRLEFLGDavL~l~vs~~Lf~~~p~~~eG~Lt~~rs~lV~n~~ 89 (235)
T PRK12371 10 ATASILEERTGHRFANKERLERALTHSSARASKQGNYERLEFLGDRVLGLCVAEMLFEAFPDASEGELSVRLNQLVNAET 89 (235)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHcCcCcccCCccchHhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhChHH
Confidence 45788999999999999999999999999765456999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCchhhhccCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCceeEEee
Q 000174 1670 FARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQV 1749 (1931)
Q Consensus 1670 La~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~~~v~~~ 1749 (1931)
||.+|.++||++||+.++.... .+....+|++||+|||+|||||+|+|++ .+++|
T Consensus 90 La~ia~~lgL~~~i~~~~~~~~-----------------------~~~~~~~~ilad~~EAliGAiylD~G~~--~a~~~ 144 (235)
T PRK12371 90 CAAIADEIGLHDLIRTGSDVKK-----------------------LTGKRLLNVRADVVEALIAAIYLDGGLE--AARPF 144 (235)
T ss_pred HHHHHHHCCcHHHhccCcchhh-----------------------cCCcccchHHHHHHHHHHHHHHHcCCHH--HHHHH
Confidence 9999999999999998765421 1233557999999999999999999976 56678
Q ss_pred eccCCCCCCCC-CCCCCCChHHHHHHHHhhcC-CceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHH
Q 000174 1750 FQPLLDPMVTP-ETLPMHPVRELQERCQQQAE-GLEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARN 1822 (1931)
Q Consensus 1750 ~~~~l~~~i~~-~~~~~~P~~~L~e~~~~~~~-~~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~ 1822 (1931)
+.+++.+.+.. .....|||+.||||||+.+. .++|++.. .| +.|+|+|+++|..+++|.|.|||+|++.||+.
T Consensus 145 i~~~~~~~~~~~~~~~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Ae~~AA~~ 224 (235)
T PRK12371 145 IQRYWQKRALETDAARRDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETGEGRSKRAAEQVAAEK 224 (235)
T ss_pred HHHHHHHHHhccccccCCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHH
Confidence 88887775543 23467999999999998755 46999753 34 47999999999999999999999999999999
Q ss_pred HHHHHHh
Q 000174 1823 ALAVLKE 1829 (1931)
Q Consensus 1823 AL~~L~~ 1829 (1931)
||+.|+.
T Consensus 225 al~~~~~ 231 (235)
T PRK12371 225 MLEREGV 231 (235)
T ss_pred HHHHhhh
Confidence 9999864
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=410.28 Aligned_cols=336 Identities=23% Similarity=0.272 Sum_probs=253.9
Q ss_pred ccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhh-cCCCcEEEEEeCC
Q 000174 283 QECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQR-QNKKMLAVFLVPK 360 (1931)
Q Consensus 283 ~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~-~~~~~~vL~LvPT 360 (1931)
|+..+..+...+.+...++.+|+++|.++++.+++ +|+|+++|||+|||++|++|+.+.+..... .....++|||+||
T Consensus 3 f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt 82 (434)
T PRK11192 3 FSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPT 82 (434)
T ss_pred HhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCc
Confidence 33444444455889999999999999999999999 899999999999999999998877654321 2334689999999
Q ss_pred hhHHHHHHHHHHHH---cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCc
Q 000174 361 VPLVYQQAEVIREQ---TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHH 437 (1931)
Q Consensus 361 ~~Lv~Q~~~~l~~~---~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~ 437 (1931)
++|+.|+++.+..+ +++++..++|+..... .......+++|+|+||++|++.+.++.+.+.++++|||||||+
T Consensus 83 ~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~----~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~ 158 (434)
T PRK11192 83 RELAMQVADQARELAKHTHLDIATITGGVAYMN----HAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADR 158 (434)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEECCCCHHH----HHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHH
Confidence 99999999887765 4789999999876432 2222335789999999999999999888899999999999999
Q ss_pred ccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeE
Q 000174 438 AVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVV 517 (1931)
Q Consensus 438 ~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~ 517 (1931)
+.. +.|...+..+....+ ...++++||||+.. ..+..+...+ ...|....
T Consensus 159 ~l~-~~~~~~~~~i~~~~~--~~~q~~~~SAT~~~-----------~~~~~~~~~~----------------~~~~~~i~ 208 (434)
T PRK11192 159 MLD-MGFAQDIETIAAETR--WRKQTLLFSATLEG-----------DAVQDFAERL----------------LNDPVEVE 208 (434)
T ss_pred HhC-CCcHHHHHHHHHhCc--cccEEEEEEeecCH-----------HHHHHHHHHH----------------ccCCEEEE
Confidence 997 478888877766543 24789999999752 0111111111 11111110
Q ss_pred EEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHH
Q 000174 518 VEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALG 597 (1931)
Q Consensus 518 ~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~ 597 (1931)
. .+... .+
T Consensus 209 ~--~~~~~-------------------------------------------------~~--------------------- 216 (434)
T PRK11192 209 A--EPSRR-------------------------------------------------ER--------------------- 216 (434)
T ss_pred e--cCCcc-------------------------------------------------cc---------------------
Confidence 0 00000 00
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccc
Q 000174 598 ELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGEL 677 (1931)
Q Consensus 598 ~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l 677 (1931)
..+.....
T Consensus 217 ------------------------------------------------------------------------~~i~~~~~ 224 (434)
T PRK11192 217 ------------------------------------------------------------------------KKIHQWYY 224 (434)
T ss_pred ------------------------------------------------------------------------cCceEEEE
Confidence 00000000
Q ss_pred cccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEc
Q 000174 678 LDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIG 757 (1931)
Q Consensus 678 ~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G 757 (1931)
.......|...|..++.. ....++||||+++..+..|++.|.. .++++..+||
T Consensus 225 --------------------~~~~~~~k~~~l~~l~~~---~~~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~l~g 277 (434)
T PRK11192 225 --------------------RADDLEHKTALLCHLLKQ---PEVTRSIVFVRTRERVHELAGWLRK----AGINCCYLEG 277 (434)
T ss_pred --------------------EeCCHHHHHHHHHHHHhc---CCCCeEEEEeCChHHHHHHHHHHHh----CCCCEEEecC
Confidence 000112344555555532 2457999999999999999999987 6789999999
Q ss_pred cCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE
Q 000174 758 HNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY 828 (1931)
Q Consensus 758 ~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ 828 (1931)
+|++.+|..++++|++|+++|||||+++++|||+|+|++||+||+|.+...|+||+|||||.|..+
T Consensus 278 -----~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g 343 (434)
T PRK11192 278 -----EMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKG 343 (434)
T ss_pred -----CCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999874
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=404.54 Aligned_cols=338 Identities=22% Similarity=0.272 Sum_probs=252.7
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhc----CCCcEEEE
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQ----NKKMLAVF 356 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~----~~~~~vL~ 356 (1931)
.+......+...+.+.+.++..|+++|.++++.+++ +|+|++++||||||++|++|+.+.+...... ....++||
T Consensus 88 ~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLi 167 (475)
T PRK01297 88 RFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALI 167 (475)
T ss_pred CHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEE
Confidence 344444444455889999999999999999999999 8999999999999999999988776542110 12468999
Q ss_pred EeCChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEe
Q 000174 357 LVPKVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILD 433 (1931)
Q Consensus 357 LvPT~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~D 433 (1931)
|+||++|+.||.+.++.+. ++++..++|+..... .........++|+|+||++|++++.++.+.+.++++||||
T Consensus 168 l~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~---~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViD 244 (475)
T PRK01297 168 IAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDK---QLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLD 244 (475)
T ss_pred EeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHH---HHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEec
Confidence 9999999999999988764 788888999865322 2222123568999999999999998888889999999999
Q ss_pred CCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCC
Q 000174 434 ECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMP 513 (1931)
Q Consensus 434 EaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p 513 (1931)
|||++.+. .|...++.+....+....++++++|||... .+..+... +...|
T Consensus 245 Eah~l~~~-~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~------------~~~~~~~~----------------~~~~~ 295 (475)
T PRK01297 245 EADRMLDM-GFIPQVRQIIRQTPRKEERQTLLFSATFTD------------DVMNLAKQ----------------WTTDP 295 (475)
T ss_pred hHHHHHhc-ccHHHHHHHHHhCCCCCCceEEEEEeecCH------------HHHHHHHH----------------hccCC
Confidence 99999884 677777777776655445789999999642 11111111 11111
Q ss_pred ceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHH
Q 000174 514 SEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAIN 593 (1931)
Q Consensus 514 ~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~ 593 (1931)
....+......
T Consensus 296 ~~v~~~~~~~~--------------------------------------------------------------------- 306 (475)
T PRK01297 296 AIVEIEPENVA--------------------------------------------------------------------- 306 (475)
T ss_pred EEEEeccCcCC---------------------------------------------------------------------
Confidence 11000000000
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccc
Q 000174 594 YALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIE 673 (1931)
Q Consensus 594 ~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 673 (1931)
...+.
T Consensus 307 ---------------------------------------------------------------------------~~~~~ 311 (475)
T PRK01297 307 ---------------------------------------------------------------------------SDTVE 311 (475)
T ss_pred ---------------------------------------------------------------------------CCccc
Confidence 00000
Q ss_pred cccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeE
Q 000174 674 EGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSA 753 (1931)
Q Consensus 674 ~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~ 753 (1931)
. .+.....+.|...|.+++.. ....++||||+++.+++.|++.|.. .++.+.
T Consensus 312 ~---------------------~~~~~~~~~k~~~l~~ll~~---~~~~~~IVF~~s~~~~~~l~~~L~~----~~~~~~ 363 (475)
T PRK01297 312 Q---------------------HVYAVAGSDKYKLLYNLVTQ---NPWERVMVFANRKDEVRRIEERLVK----DGINAA 363 (475)
T ss_pred E---------------------EEEEecchhHHHHHHHHHHh---cCCCeEEEEeCCHHHHHHHHHHHHH----cCCCEE
Confidence 0 00000112344455555543 2356899999999999999999987 578999
Q ss_pred EEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE
Q 000174 754 SLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY 828 (1931)
Q Consensus 754 ~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ 828 (1931)
.+|| ++++.+|.+++++|++|+++|||||+++++|||||+|++||+||+|.|+.+|+||+|||||.|+.+
T Consensus 364 ~~~g-----~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g 433 (475)
T PRK01297 364 QLSG-----DVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASG 433 (475)
T ss_pred EEEC-----CCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCc
Confidence 9999 999999999999999999999999999999999999999999999999999999999999999874
|
|
| >PRK12372 ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=389.85 Aligned_cols=210 Identities=29% Similarity=0.442 Sum_probs=184.8
Q ss_pred HHHHHHHcCCCcCCHHHHHHHhcCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHHHH
Q 000174 1592 FHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFA 1671 (1931)
Q Consensus 1592 ~~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~La 1671 (1931)
+..||++|||+|+|+.||.+||||+||.. .+|||||||||+||+++|++|||++||++++|.||.+|+.||||++|+
T Consensus 3 l~~LEk~LGY~Fkn~~LL~eALTH~Sy~~---~~NERLEFLGDAVL~liVse~Lf~~fP~~~EG~LT~lRS~LVsn~tLA 79 (413)
T PRK12372 3 LSQLESRLRYEFRNAELLRQALTHRSHSA---THNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLY 79 (413)
T ss_pred HHHHHHHhCCCcCCHHHHHHHHhcccccc---ccHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhHHHH
Confidence 56799999999999999999999999854 489999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCchhhhccCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCceeEEeeec
Q 000174 1672 RVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQ 1751 (1931)
Q Consensus 1672 ~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~~~v~~~~~ 1751 (1931)
.+|.++||++||+++.++.. .++...+++|+|+|||||||||+|+|++ .++.|+.
T Consensus 80 ~IA~~LgL~~~Lrlg~ge~~-----------------------sgg~~~~kILADvfEALIGAIYLDsG~e--~a~~fV~ 134 (413)
T PRK12372 80 EIAQALNISEGLRLGEGELR-----------------------SGGFRRPSILADAFEAIIGAVFLDGGFE--AAQGVIK 134 (413)
T ss_pred HHHHHcCchHhhhcCcchhh-----------------------cCCCCCccHHHHHHHHHHHHHHHhCCHH--HHHHHHH
Confidence 99999999999998876532 2335679999999999999999999976 5677888
Q ss_pred cCCCCCCCC---CCCCCCChHHHHHHHHhhcCC-ceeEEec-cC----CeEEEEEEECCEE-EEEeecCCHHHHHHHHHH
Q 000174 1752 PLLDPMVTP---ETLPMHPVRELQERCQQQAEG-LEYKASR-SG----NLATVEVYIDGVQ-VGVAQNPQKKMAQKLAAR 1821 (1931)
Q Consensus 1752 ~~l~~~i~~---~~~~~~P~~~L~e~~~~~~~~-~~y~~~~-~g----~~f~v~V~v~g~~-~~~g~g~skk~Ak~~AA~ 1821 (1931)
.+|.++++. ....+|||+.||||||+++.. ++|++.. .| +.|+|.|+|+|.. .++|.|.|||+|++.||+
T Consensus 135 ~ll~p~l~~~~~~~~~~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~G~SKKeAEQ~AAr 214 (413)
T PRK12372 135 RLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGSGASRRAAEQAAAK 214 (413)
T ss_pred HHHHHHHhhcccccccCCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEEeCCHHHHHHHHHH
Confidence 887776543 234679999999999998876 5998654 34 4799999999854 489999999999999999
Q ss_pred HHHHHHHh
Q 000174 1822 NALAVLKE 1829 (1931)
Q Consensus 1822 ~AL~~L~~ 1829 (1931)
.||++|..
T Consensus 215 ~AL~kL~~ 222 (413)
T PRK12372 215 KALDEVMA 222 (413)
T ss_pred HHHHHHhc
Confidence 99999984
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=418.37 Aligned_cols=477 Identities=24% Similarity=0.318 Sum_probs=295.5
Q ss_pred CCCCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCC--
Q 000174 300 PEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY-- 377 (1931)
Q Consensus 300 ~~~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l-- 377 (1931)
+..++|+||.+++..++.+|+|+++|||+|||++|++++.+++. ..+.++|||+||++|+.||.+.++++++.
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~n~lv~~ptG~GKT~~a~~~i~~~l~-----~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 86 (773)
T PRK13766 12 NTIEARLYQQLLAATALKKNTLVVLPTGLGKTAIALLVIAERLH-----KKGGKVLILAPTKPLVEQHAEFFRKFLNIPE 86 (773)
T ss_pred CcCCccHHHHHHHHHHhcCCeEEEcCCCccHHHHHHHHHHHHHH-----hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCC
Confidence 45689999999999999999999999999999999999888764 24568999999999999999999998866
Q ss_pred -cEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcC
Q 000174 378 -VVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTS 456 (1931)
Q Consensus 378 -~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~ 456 (1931)
++..++|+.... .....+..++|+|+||+++.+.+..+.+.+.++++||||||||+.+++.|..+++.+....
T Consensus 87 ~~v~~~~g~~~~~-----~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~- 160 (773)
T PRK13766 87 EKIVVFTGEVSPE-----KRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDA- 160 (773)
T ss_pred ceEEEEeCCCCHH-----HHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcC-
Confidence 788888876543 2233346789999999999998888888999999999999999999889999988776543
Q ss_pred CCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEe--cchHHHhhhCCCCceeEEEeccchhhhHHHHHHH
Q 000174 457 KEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTI--KDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLK 534 (1931)
Q Consensus 457 ~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~--~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~ 534 (1931)
..|+++||||||... ...+..+...|....... .....+..++..+....+..........+...+.
T Consensus 161 --~~~~il~lTaTP~~~---------~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~ 229 (773)
T PRK13766 161 --KNPLVLGLTASPGSD---------EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLN 229 (773)
T ss_pred --CCCEEEEEEcCCCCC---------HHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHH
Confidence 358999999999742 124555555554333222 2344566666655544444443333334444443
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HH
Q 000174 535 QMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQS--FL 612 (1931)
Q Consensus 535 ~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~--~l 612 (1931)
.+.......+....... ..+. . .....+......+...+..... ..+..... .+
T Consensus 230 ~~~~~~l~~l~~~~~~~-----~~~~---------------~---~~~~~l~~~~~~~~~~l~~~~~-~~~~~~~~~~~~ 285 (773)
T PRK13766 230 EALKDRLKKLKELGVIV-----SISP---------------D---VSKKELLGLQKKLQQEIANDDS-EGYEAISILAEA 285 (773)
T ss_pred HHHHHHHHHHHHCCCcc-----cCCC---------------C---cCHHHHHHHHHHHHHHhhcCch-HHHHHHHHHHHH
Confidence 33222111111000000 0000 0 0000000000000000000000 00000000 00
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhh
Q 000174 613 TALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVI 692 (1931)
Q Consensus 613 ~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~ 692 (1931)
..+..............-..|+..+..... ..+. . .....-..+. .....
T Consensus 286 ~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~---~~~~-~--------------~~~~~l~~~~------------~~~~~ 335 (773)
T PRK13766 286 MKLRHAVELLETQGVEALRRYLERLREEAR---SSGG-S--------------KASKRLVEDP------------RFRKA 335 (773)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHhhcc---ccCC-c--------------HHHHHHHhCH------------HHHHH
Confidence 000000000000000001122222211100 0000 0 0000000000 00000
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHh-cCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCC---ccccHHH
Q 000174 693 IGAAVADGKVTPKVQSLIKILLKY-QHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNS---QEMRTFQ 768 (1931)
Q Consensus 693 i~~~~~~~~~s~Kv~~Li~lL~~~-~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~---~~~~~~~ 768 (1931)
+.........++|+..|.++|.+. ...++.++||||+++.++..|.+.|.. .++++..+||.+.. .+|++.+
T Consensus 336 ~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~----~~~~~~~~~g~~~~~~~~~~~~~~ 411 (773)
T PRK13766 336 VRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEK----EGIKAVRFVGQASKDGDKGMSQKE 411 (773)
T ss_pred HHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHh----CCCceEEEEccccccccCCCCHHH
Confidence 101111124579999999999876 235778999999999999999999976 67889999995322 3588999
Q ss_pred HHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc-EEEEEecCChhHHHHHHHHH
Q 000174 769 MQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD-YILMIERGNLSHATFLRNAR 847 (1931)
Q Consensus 769 R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~-~ivlv~~~~~~~~~~l~~~~ 847 (1931)
|.+++++|++|++++||||++++||+|+|+|++||+||+|+|+.+|+||+||+||.|.. .++|+..+..++..++...
T Consensus 412 r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~~~v~~l~~~~t~ee~~y~~~~- 490 (773)
T PRK13766 412 QIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEEGRVVVLIAKGTRDEAYYWSSR- 490 (773)
T ss_pred HHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCCCEEEEEEeCCChHHHHHHHhh-
Confidence 99999999999999999999999999999999999999999999999999999997655 4455555554444444333
Q ss_pred HHHHHHHHHH
Q 000174 848 NSEETLRKEA 857 (1931)
Q Consensus 848 ~~e~~l~~~~ 857 (1931)
+.|+.|.+..
T Consensus 491 ~ke~~~~~~l 500 (773)
T PRK13766 491 RKEKKMKEEL 500 (773)
T ss_pred HHHHHHHHHH
Confidence 3455554433
|
|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=363.56 Aligned_cols=329 Identities=20% Similarity=0.238 Sum_probs=250.7
Q ss_pred cchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhh---hcCCCcEEEEEeCChhHHHH
Q 000174 291 KKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQ---RQNKKMLAVFLVPKVPLVYQ 366 (1931)
Q Consensus 291 ~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~---~~~~~~~vL~LvPT~~Lv~Q 366 (1931)
...+.+.+.||.+|+|+|.+|.|.+++ .|+|.++.||+|||++|++|-.-++...+ .+..++.+|+++||++|+.|
T Consensus 230 evmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalq 309 (629)
T KOG0336|consen 230 EVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQ 309 (629)
T ss_pred HHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHH
Confidence 355889999999999999999999999 99999999999999999997554433221 13456779999999999999
Q ss_pred HHHHHHHHc--CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcH
Q 000174 367 QAEVIREQT--GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPY 444 (1931)
Q Consensus 367 ~~~~l~~~~--~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~ 444 (1931)
+.-+..++. +++..+++|+.+. ..+...+..+.+|+|+||++|.++...+.+.+..+.+||+||||+|++ ++|
T Consensus 310 ie~e~~kysyng~ksvc~ygggnR----~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLD-MgF 384 (629)
T KOG0336|consen 310 IEGEVKKYSYNGLKSVCVYGGGNR----NEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLD-MGF 384 (629)
T ss_pred HHhHHhHhhhcCcceEEEecCCCc----hhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhc-ccc
Confidence 988887754 7888888887653 455566668999999999999999999999999999999999999999 789
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEeec-CCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccc
Q 000174 445 SLVMSEFYHTTSKEKRPSVFGMTAS-PVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKA 523 (1931)
Q Consensus 445 ~~im~~~~~~~~~~~~p~iLgLTAT-P~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~ 523 (1931)
...++.++..... ..++++.||| |. .++.|.. .+...|....+- ..
T Consensus 385 EpqIrkilldiRP--DRqtvmTSATWP~-------------~VrrLa~----------------sY~Kep~~v~vG--sL 431 (629)
T KOG0336|consen 385 EPQIRKILLDIRP--DRQTVMTSATWPE-------------GVRRLAQ----------------SYLKEPMIVYVG--SL 431 (629)
T ss_pred cHHHHHHhhhcCC--cceeeeecccCch-------------HHHHHHH----------------HhhhCceEEEec--cc
Confidence 8877777654332 3688999999 43 2223321 122222211110 00
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHH
Q 000174 524 ASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWC 603 (1931)
Q Consensus 524 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~ 603 (1931)
. .-
T Consensus 432 d------------------------------------L~----------------------------------------- 434 (629)
T KOG0336|consen 432 D------------------------------------LV----------------------------------------- 434 (629)
T ss_pred c------------------------------------ee-----------------------------------------
Confidence 0 00
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccc
Q 000174 604 AYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVV 683 (1931)
Q Consensus 604 a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~ 683 (1931)
+. .
T Consensus 435 a~---------------------------------------------------------------------~-------- 437 (629)
T KOG0336|consen 435 AV---------------------------------------------------------------------K-------- 437 (629)
T ss_pred ee---------------------------------------------------------------------e--------
Confidence 00 0
Q ss_pred cCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCcc
Q 000174 684 SGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQE 763 (1931)
Q Consensus 684 s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~ 763 (1931)
.+.+.+.....+.|+...-.++.. ..++.|+||||.++..|+-|..-|.- .++.+..+|| +
T Consensus 438 --------sVkQ~i~v~~d~~k~~~~~~f~~~--ms~ndKvIiFv~~K~~AD~LSSd~~l----~gi~~q~lHG-----~ 498 (629)
T KOG0336|consen 438 --------SVKQNIIVTTDSEKLEIVQFFVAN--MSSNDKVIIFVSRKVMADHLSSDFCL----KGISSQSLHG-----N 498 (629)
T ss_pred --------eeeeeEEecccHHHHHHHHHHHHh--cCCCceEEEEEechhhhhhccchhhh----cccchhhccC-----C
Confidence 000000011223444333333333 35678999999999999998877654 7999999999 8
Q ss_pred ccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEE
Q 000174 764 MRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYIL 830 (1931)
Q Consensus 764 ~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~iv 830 (1931)
..|.+|+.+++.|++|+++||||||+++||||+|++.+|+|||.|.|...|+||+||+||+|.++..
T Consensus 499 r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~s 565 (629)
T KOG0336|consen 499 REQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTS 565 (629)
T ss_pred hhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcce
Confidence 9999999999999999999999999999999999999999999999999999999999999988443
|
|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=360.78 Aligned_cols=369 Identities=20% Similarity=0.223 Sum_probs=278.6
Q ss_pred ccccccccCCCCCCCCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHh
Q 000174 267 WEADHNRAGKEANGINQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDL 345 (1931)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~ 345 (1931)
|....+.+..++...+|.+..+.......+++.|+..|||+|.+.+|.++. +|.|..+-||||||++|++|+.-+..+.
T Consensus 156 ~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~Leq 235 (610)
T KOG0341|consen 156 LHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQ 235 (610)
T ss_pred heEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHH
Confidence 433344445555556666666665667889999999999999999999999 9999999999999999999877555433
Q ss_pred h-----hcCCCcEEEEEeCChhHHHHHHHHHHHHc---------CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHH
Q 000174 346 Q-----RQNKKMLAVFLVPKVPLVYQQAEVIREQT---------GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQ 411 (1931)
Q Consensus 346 ~-----~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~---------~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq 411 (1931)
. ..+.++..||+||+|+|+.|.++.+..++ .++..++.|+..+ .++......+.+|+|+||+
T Consensus 236 E~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v----~eql~~v~~GvHivVATPG 311 (610)
T KOG0341|consen 236 EMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPV----REQLDVVRRGVHIVVATPG 311 (610)
T ss_pred HhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccH----HHHHHHHhcCeeEEEcCcc
Confidence 2 25678889999999999999999988764 2567778888875 3455556689999999999
Q ss_pred HHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHH
Q 000174 412 ILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLES 491 (1931)
Q Consensus 412 ~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~ 491 (1931)
+|.|+|....++++-..+|++|||+++.+ ++|...++.++...+. +.+.|++|||-.. .|+.+..
T Consensus 312 RL~DmL~KK~~sLd~CRyL~lDEADRmiD-mGFEddir~iF~~FK~--QRQTLLFSATMP~------------KIQ~FAk 376 (610)
T KOG0341|consen 312 RLMDMLAKKIMSLDACRYLTLDEADRMID-MGFEDDIRTIFSFFKG--QRQTLLFSATMPK------------KIQNFAK 376 (610)
T ss_pred hHHHHHHHhhccHHHHHHhhhhhHHHHhh-ccchhhHHHHHHHHhh--hhheeeeeccccH------------HHHHHHH
Confidence 99999999999999999999999999998 6998888887766543 4789999999442 2222111
Q ss_pred hcCCeEEEecchHHHhhhCCCCceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhh
Q 000174 492 KLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVY 571 (1931)
Q Consensus 492 ~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 571 (1931)
.-+-+|..+.+.-.....
T Consensus 377 ----------------SALVKPvtvNVGRAGAAs---------------------------------------------- 394 (610)
T KOG0341|consen 377 ----------------SALVKPVTVNVGRAGAAS---------------------------------------------- 394 (610)
T ss_pred ----------------hhcccceEEecccccccc----------------------------------------------
Confidence 011123222111000000
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccc
Q 000174 572 GVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVS 651 (1931)
Q Consensus 572 ~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~ 651 (1931)
..+++ +-.|.+
T Consensus 395 ---------------------------------ldViQ--------------------evEyVk---------------- 405 (610)
T KOG0341|consen 395 ---------------------------------LDVIQ--------------------EVEYVK---------------- 405 (610)
T ss_pred ---------------------------------hhHHH--------------------HHHHHH----------------
Confidence 00000 001110
Q ss_pred cccccccccccccccCCccccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeeh
Q 000174 652 KKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERV 731 (1931)
Q Consensus 652 ~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r 731 (1931)
...|+..|++-|.+ ....++||++.+
T Consensus 406 --------------------------------------------------qEaKiVylLeCLQK----T~PpVLIFaEkK 431 (610)
T KOG0341|consen 406 --------------------------------------------------QEAKIVYLLECLQK----TSPPVLIFAEKK 431 (610)
T ss_pred --------------------------------------------------hhhhhhhHHHHhcc----CCCceEEEeccc
Confidence 12355566666643 467899999999
Q ss_pred hHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCH
Q 000174 732 VAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTV 811 (1931)
Q Consensus 732 ~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~ 811 (1931)
..++.+.++|-- .|+.++.||| +..|++|...++.||.|+-+|||||||++.|+|+|++.+|||||+|...
T Consensus 432 ~DVD~IhEYLLl----KGVEavaIHG-----GKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eI 502 (610)
T KOG0341|consen 432 ADVDDIHEYLLL----KGVEAVAIHG-----GKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEI 502 (610)
T ss_pred cChHHHHHHHHH----ccceeEEeec-----CcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHH
Confidence 999999999865 8999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCCcEEEEEecCChhHHHHHHHHHH
Q 000174 812 LAYIQSRGRARKPGSDYILMIERGNLSHATFLRNARN 848 (1931)
Q Consensus 812 ~~yiQr~GRa~R~Gs~~ivlv~~~~~~~~~~l~~~~~ 848 (1931)
..|+||+||+||.|.+++.-+.-.....+..+.+++.
T Consensus 503 ENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~ 539 (610)
T KOG0341|consen 503 ENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKH 539 (610)
T ss_pred HHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHH
Confidence 9999999999999999655443222333445555543
|
|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=356.19 Aligned_cols=353 Identities=22% Similarity=0.277 Sum_probs=278.5
Q ss_pred CCCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe
Q 000174 280 GINQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV 358 (1931)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv 358 (1931)
...|++...-....-.+-..|+.+|.|+|.++||.++. +|+++.+..|+|||-+|++|.++.+.. ......++|+|
T Consensus 84 G~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~---~~~~IQ~~ilV 160 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDP---KKNVIQAIILV 160 (459)
T ss_pred CccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCc---cccceeEEEEe
Confidence 34455555544455778889999999999999999999 999999999999999999998877653 34567899999
Q ss_pred CChhHHHHHHHH---HHHHcCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCC
Q 000174 359 PKVPLVYQQAEV---IREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDEC 435 (1931)
Q Consensus 359 PT~~Lv~Q~~~~---l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEa 435 (1931)
||++|+-|..+. +.+++++.|.+.+|+.+.. +...++...++++|+||++++|+...+.-.+++..++|+|||
T Consensus 161 PtrelALQtSqvc~~lskh~~i~vmvttGGT~lr----DDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEA 236 (459)
T KOG0326|consen 161 PTRELALQTSQVCKELSKHLGIKVMVTTGGTSLR----DDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEA 236 (459)
T ss_pred ecchhhHHHHHHHHHHhcccCeEEEEecCCcccc----cceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechh
Confidence 999999886555 4556799999999998652 333445578999999999999999999999999999999999
Q ss_pred CcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeec-CCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCc
Q 000174 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTAS-PVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPS 514 (1931)
Q Consensus 436 H~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTAT-P~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~ 514 (1931)
|.++.. .|..++..++...|+. +++++.||| |.. -...+.+++.+|.
T Consensus 237 DKlLs~-~F~~~~e~li~~lP~~--rQillySATFP~t-----------------------------Vk~Fm~~~l~kPy 284 (459)
T KOG0326|consen 237 DKLLSV-DFQPIVEKLISFLPKE--RQILLYSATFPLT-----------------------------VKGFMDRHLKKPY 284 (459)
T ss_pred hhhhch-hhhhHHHHHHHhCCcc--ceeeEEecccchh-----------------------------HHHHHHHhccCcc
Confidence 999995 8999999999988875 899999999 432 1224446777776
Q ss_pred eeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHH
Q 000174 515 EVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINY 594 (1931)
Q Consensus 515 e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~ 594 (1931)
++.. .+.+
T Consensus 285 ~INL-----------M~eL------------------------------------------------------------- 292 (459)
T KOG0326|consen 285 EINL-----------MEEL------------------------------------------------------------- 292 (459)
T ss_pred eeeh-----------hhhh-------------------------------------------------------------
Confidence 5421 0000
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccc
Q 000174 595 ALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEE 674 (1931)
Q Consensus 595 ~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 674 (1931)
++....++.+
T Consensus 293 tl~GvtQyYa---------------------------------------------------------------------- 302 (459)
T KOG0326|consen 293 TLKGVTQYYA---------------------------------------------------------------------- 302 (459)
T ss_pred hhcchhhhee----------------------------------------------------------------------
Confidence 0000111111
Q ss_pred ccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEE
Q 000174 675 GELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSAS 754 (1931)
Q Consensus 675 ~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~ 754 (1931)
-...+.|+..|-.++.+. .-.++||||++...++.|+..+.+ -|+.+.+
T Consensus 303 ------------------------fV~e~qKvhCLntLfskL---qINQsIIFCNS~~rVELLAkKITe----lGyscyy 351 (459)
T KOG0326|consen 303 ------------------------FVEERQKVHCLNTLFSKL---QINQSIIFCNSTNRVELLAKKITE----LGYSCYY 351 (459)
T ss_pred ------------------------eechhhhhhhHHHHHHHh---cccceEEEeccchHhHHHHHHHHh----ccchhhH
Confidence 012245777777776665 356899999999999999999998 4799999
Q ss_pred EEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE--EEEE
Q 000174 755 LIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY--ILMI 832 (1931)
Q Consensus 755 l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~--ivlv 832 (1931)
+|. .|.+..|..++..||+|.++.|||||.+.||||+|++|+|||||.|.++++|.||+||+||.|.-+ +.++
T Consensus 352 iHa-----kM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLi 426 (459)
T KOG0326|consen 352 IHA-----KMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLI 426 (459)
T ss_pred HHH-----HHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEE
Confidence 999 999999999999999999999999999999999999999999999999999999999999999874 4445
Q ss_pred ecCChhHHHHHHHHHHHHHHHHH
Q 000174 833 ERGNLSHATFLRNARNSEETLRK 855 (1931)
Q Consensus 833 ~~~~~~~~~~l~~~~~~e~~l~~ 855 (1931)
.-++. .++.++|+++..
T Consensus 427 tyedr------f~L~~IE~eLGt 443 (459)
T KOG0326|consen 427 TYEDR------FNLYRIEQELGT 443 (459)
T ss_pred ehhhh------hhHHHHHHHhcc
Confidence 43321 234556665543
|
|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=370.09 Aligned_cols=362 Identities=20% Similarity=0.245 Sum_probs=248.0
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHh----------hhcC
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDL----------QRQN 349 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~----------~~~~ 349 (1931)
.|..++.......++..+||..|+++|...+|.+.. .|+|.+++||||||++|.+||.+.+... ...+
T Consensus 182 AW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~ 261 (731)
T KOG0347|consen 182 AWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKY 261 (731)
T ss_pred HHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhcc
Confidence 345554444466999999999999999999999988 7999999999999999999998733221 1234
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHH---HcCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccc---c
Q 000174 350 KKMLAVFLVPKVPLVYQQAEVIRE---QTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSII---K 423 (1931)
Q Consensus 350 ~~~~vL~LvPT~~Lv~Q~~~~l~~---~~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l---~ 423 (1931)
.++.+|||+|||+||.|+.+.|.. .+++++..++||+.+- .+-+-+...++|||+|||+|+.++..+.. .
T Consensus 262 ~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavq----KQqRlL~~~p~IVVATPGRlweli~e~n~~l~~ 337 (731)
T KOG0347|consen 262 VKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQ----KQQRLLNQRPDIVVATPGRLWELIEEDNTHLGN 337 (731)
T ss_pred CcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHH----HHHHHHhcCCCEEEecchHHHHHHHhhhhhhhh
Confidence 445699999999999999988876 4589999999998752 22222335899999999999999987644 6
Q ss_pred ccceeEEEEeCCCcccCCCcHHHHHHHHHhh---cCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEe
Q 000174 424 MEAINLLILDECHHAVKKHPYSLVMSEFYHT---TSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTI 500 (1931)
Q Consensus 424 l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~---~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~ 500 (1931)
+.++++||+||||||....-|... ..++.. .+.....+.|.+|||..-.... .+.....
T Consensus 338 ~k~vkcLVlDEaDRmvekghF~El-s~lL~~L~e~~~~~qrQTlVFSATlt~~~~~--------~~~~~~k--------- 399 (731)
T KOG0347|consen 338 FKKVKCLVLDEADRMVEKGHFEEL-SKLLKHLNEEQKNRQRQTLVFSATLTLVLQQ--------PLSSSRK--------- 399 (731)
T ss_pred hhhceEEEEccHHHHhhhccHHHH-HHHHHHhhhhhcccccceEEEEEEeehhhcC--------hhHHhhh---------
Confidence 788999999999999987445433 333332 2334457899999996531110 0000000
Q ss_pred cchHHHhhhCCCCceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccch
Q 000174 501 KDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESD 580 (1931)
Q Consensus 501 ~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~ 580 (1931)
.... ...+...|..++..+. .+++-.++ .
T Consensus 400 -------~~~k--------------~~~~~~kiq~Lmk~ig-------~~~kpkii------------------D----- 428 (731)
T KOG0347|consen 400 -------KKDK--------------EDELNAKIQHLMKKIG-------FRGKPKII------------------D----- 428 (731)
T ss_pred -------ccch--------------hhhhhHHHHHHHHHhC-------ccCCCeeE------------------e-----
Confidence 0000 0011111111111100 00000000 0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHH-HHhhhhhhhcccccccccccc
Q 000174 581 GAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVV-SLLQCELVEGAVSKKDAKVVD 659 (1931)
Q Consensus 581 ~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~-~~l~~~~~~~~~~~~~~~i~~ 659 (1931)
+.+ +......+. ..+.|.+
T Consensus 429 ------------------~t~----------------------------q~~ta~~l~Es~I~C~~-------------- 448 (731)
T KOG0347|consen 429 ------------------LTP----------------------------QSATASTLTESLIECPP-------------- 448 (731)
T ss_pred ------------------cCc----------------------------chhHHHHHHHHhhcCCc--------------
Confidence 000 000000000 0011110
Q ss_pred cccccccCCccccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHH
Q 000174 660 SENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPK 739 (1931)
Q Consensus 660 ~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~ 739 (1931)
..|-..|.-+|..| ..++||||++++.+..|+-
T Consensus 449 -------------------------------------------~eKD~ylyYfl~ry----PGrTlVF~NsId~vKRLt~ 481 (731)
T KOG0347|consen 449 -------------------------------------------LEKDLYLYYFLTRY----PGRTLVFCNSIDCVKRLTV 481 (731)
T ss_pred -------------------------------------------cccceeEEEEEeec----CCceEEEechHHHHHHHHH
Confidence 01111122222223 5799999999999999999
Q ss_pred HHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhc
Q 000174 740 VFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRG 819 (1931)
Q Consensus 740 ~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~G 819 (1931)
+|..+ ++.+..+|. .|.|++|...|++|++....||||||||+||||||+|.+||||-.|.+..-||||.|
T Consensus 482 ~L~~L----~i~p~~LHA-----~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSG 552 (731)
T KOG0347|consen 482 LLNNL----DIPPLPLHA-----SMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSG 552 (731)
T ss_pred HHhhc----CCCCchhhH-----HHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEeccc
Confidence 99984 688899999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEE
Q 000174 820 RARKPGSDYILMI 832 (1931)
Q Consensus 820 Ra~R~Gs~~ivlv 832 (1931)
|++|+++.++.++
T Consensus 553 RTARA~~~Gvsvm 565 (731)
T KOG0347|consen 553 RTARANSEGVSVM 565 (731)
T ss_pred ccccccCCCeEEE
Confidence 9999999854433
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=387.81 Aligned_cols=339 Identities=19% Similarity=0.230 Sum_probs=249.1
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP 359 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP 359 (1931)
.++...+..+...+++.+.++..|+|+|.++++.+++ +|+|+++|||||||++|++++.+.+.. ...+.++|||+|
T Consensus 28 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~---~~~~~~~lil~P 104 (401)
T PTZ00424 28 DSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY---DLNACQALILAP 104 (401)
T ss_pred CCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC---CCCCceEEEECC
Confidence 3344455444455888999999999999999999998 999999999999999999998877642 224568999999
Q ss_pred ChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCC
Q 000174 360 KVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECH 436 (1931)
Q Consensus 360 T~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH 436 (1931)
|++|+.|+.+.+..+. +..+..+.|+... ...|.....+++|+|+||++|.+.+.++.+.+.++++||+||||
T Consensus 105 t~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah 180 (401)
T PTZ00424 105 TRELAQQIQKVVLALGDYLKVRCHACVGGTVV----RDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEAD 180 (401)
T ss_pred CHHHHHHHHHHHHHHhhhcCceEEEEECCcCH----HHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHH
Confidence 9999999999888764 4566667776543 34455555678999999999999999888889999999999999
Q ss_pred cccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCcee
Q 000174 437 HAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEV 516 (1931)
Q Consensus 437 ~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~ 516 (1931)
++... .|...+..++...+ ..++++++|||+.+ .+..+.. .+...|...
T Consensus 181 ~~~~~-~~~~~~~~i~~~~~--~~~~~i~~SAT~~~------------~~~~~~~----------------~~~~~~~~~ 229 (401)
T PTZ00424 181 EMLSR-GFKGQIYDVFKKLP--PDVQVALFSATMPN------------EILELTT----------------KFMRDPKRI 229 (401)
T ss_pred HHHhc-chHHHHHHHHhhCC--CCcEEEEEEecCCH------------HHHHHHH----------------HHcCCCEEE
Confidence 99875 56655555555443 34789999999753 1111111 111111111
Q ss_pred EEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHH
Q 000174 517 VVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYAL 596 (1931)
Q Consensus 517 ~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l 596 (1931)
.+....... . . + ...+.
T Consensus 230 ~~~~~~~~~----------------------~--~---~------------~~~~~------------------------ 246 (401)
T PTZ00424 230 LVKKDELTL----------------------E--G---I------------RQFYV------------------------ 246 (401)
T ss_pred EeCCCCccc----------------------C--C---c------------eEEEE------------------------
Confidence 100000000 0 0 0 00000
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccc
Q 000174 597 GELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGE 676 (1931)
Q Consensus 597 ~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 676 (1931)
T Consensus 247 -------------------------------------------------------------------------------- 246 (401)
T PTZ00424 247 -------------------------------------------------------------------------------- 246 (401)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEE
Q 000174 677 LLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLI 756 (1931)
Q Consensus 677 l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~ 756 (1931)
.......+...+.+++.. ....++||||+++..++.+++.|.. .++.+..+|
T Consensus 247 ---------------------~~~~~~~~~~~l~~~~~~---~~~~~~ivF~~t~~~~~~l~~~l~~----~~~~~~~~h 298 (401)
T PTZ00424 247 ---------------------AVEKEEWKFDTLCDLYET---LTITQAIIYCNTRRKVDYLTKKMHE----RDFTVSCMH 298 (401)
T ss_pred ---------------------ecChHHHHHHHHHHHHHh---cCCCeEEEEecCcHHHHHHHHHHHH----CCCcEEEEe
Confidence 000000122233333322 2346899999999999999999987 578999999
Q ss_pred ccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE--EEEEe
Q 000174 757 GHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY--ILMIE 833 (1931)
Q Consensus 757 G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~--ivlv~ 833 (1931)
| ++++.+|+.++++|++|+++|||||+++++|||+|+|++||+||+|.+..+|+||+|||||.|..+ ++++.
T Consensus 299 ~-----~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~ 372 (401)
T PTZ00424 299 G-----DMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVT 372 (401)
T ss_pred C-----CCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEc
Confidence 9 999999999999999999999999999999999999999999999999999999999999998774 44443
|
|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=344.81 Aligned_cols=341 Identities=22% Similarity=0.271 Sum_probs=267.7
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhh--hcCCCcEEEEEe
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQ--RQNKKMLAVFLV 358 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~--~~~~~~~vL~Lv 358 (1931)
.++..++......++.+..|.+|||+|.++++.++. +++|-.+-||||||.+|+.|++-++.... ..+.++..||||
T Consensus 224 sfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilv 303 (731)
T KOG0339|consen 224 SFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILV 303 (731)
T ss_pred hhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEe
Confidence 344444444455788999999999999999999999 99999999999999999998876664433 247788999999
Q ss_pred CChhHHHHHHHHHHHH---cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCC
Q 000174 359 PKVPLVYQQAEVIREQ---TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDEC 435 (1931)
Q Consensus 359 PT~~Lv~Q~~~~l~~~---~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEa 435 (1931)
||++|+.|+..+.+++ .++++..+||+.+... +...+..++.||||||++|++++.-+...+.++.+||||||
T Consensus 304 PTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~e----Q~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEa 379 (731)
T KOG0339|consen 304 PTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWE----QSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEA 379 (731)
T ss_pred ccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHH----HHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEech
Confidence 9999999999999987 4899999999976422 22233379999999999999999999999999999999999
Q ss_pred CcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCce
Q 000174 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSE 515 (1931)
Q Consensus 436 H~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e 515 (1931)
++|.. ++|...++.+...... ..+.|++|||-.. .|..|.. .++..|..
T Consensus 380 drmfd-mGfe~qVrSI~~hirp--drQtllFsaTf~~------------kIe~lar----------------d~L~dpVr 428 (731)
T KOG0339|consen 380 DRMFD-MGFEPQVRSIKQHIRP--DRQTLLFSATFKK------------KIEKLAR----------------DILSDPVR 428 (731)
T ss_pred hhhhc-cccHHHHHHHHhhcCC--cceEEEeeccchH------------HHHHHHH----------------HHhcCCee
Confidence 99998 6999998888776543 3789999999542 2222211 11122222
Q ss_pred eEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHH
Q 000174 516 VVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYA 595 (1931)
Q Consensus 516 ~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~ 595 (1931)
++.. +.
T Consensus 429 vVqg-~v------------------------------------------------------------------------- 434 (731)
T KOG0339|consen 429 VVQG-EV------------------------------------------------------------------------- 434 (731)
T ss_pred EEEe-eh-------------------------------------------------------------------------
Confidence 1110 00
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccc
Q 000174 596 LGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEG 675 (1931)
Q Consensus 596 l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 675 (1931)
|..
T Consensus 435 ----gea------------------------------------------------------------------------- 437 (731)
T KOG0339|consen 435 ----GEA------------------------------------------------------------------------- 437 (731)
T ss_pred ----hcc-------------------------------------------------------------------------
Confidence 000
Q ss_pred cccccccccCCCchhhhhhhcccC-CCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEE
Q 000174 676 ELLDSHVVSGGEHVDVIIGAAVAD-GKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSAS 754 (1931)
Q Consensus 676 ~l~~~~~~s~~e~~~~~i~~~~~~-~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~ 754 (1931)
.+.|.+.+.. .....|+..|++.|.++ ....++||||..+..++.++..|+- .++.+..
T Consensus 438 --------------n~dITQ~V~V~~s~~~Kl~wl~~~L~~f--~S~gkvlifVTKk~~~e~i~a~Lkl----k~~~v~l 497 (731)
T KOG0339|consen 438 --------------NEDITQTVSVCPSEEKKLNWLLRHLVEF--SSEGKVLIFVTKKADAEEIAANLKL----KGFNVSL 497 (731)
T ss_pred --------------ccchhheeeeccCcHHHHHHHHHHhhhh--ccCCcEEEEEeccCCHHHHHHHhcc----ccceeee
Confidence 0000000000 02235888888888776 3457999999999999999999975 8999999
Q ss_pred EEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc---EEEE
Q 000174 755 LIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD---YILM 831 (1931)
Q Consensus 755 l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~---~ivl 831 (1931)
+|| +|.|.+|.++|.+|+++.+.|||+|||+++|+|||....|||||...+...|.||+||+||+|.+ |.++
T Consensus 498 lhg-----dkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlv 572 (731)
T KOG0339|consen 498 LHG-----DKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLV 572 (731)
T ss_pred ecC-----chhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEe
Confidence 999 99999999999999999999999999999999999999999999999999999999999999887 4444
Q ss_pred Ee
Q 000174 832 IE 833 (1931)
Q Consensus 832 v~ 833 (1931)
++
T Consensus 573 Te 574 (731)
T KOG0339|consen 573 TE 574 (731)
T ss_pred ch
Confidence 44
|
|
| >PRK00102 rnc ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=355.30 Aligned_cols=215 Identities=35% Similarity=0.509 Sum_probs=188.4
Q ss_pred hhHHHHHHHcCCCcCCHHHHHHHhcCCCCCC--CCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhCh
Q 000174 1590 VDFHALEDALKIKFKDRGLLVEAITHASRPS--SGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNN 1667 (1931)
Q Consensus 1590 ~~~~~le~~lgy~F~~~~LL~~AlTH~S~~~--~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n 1667 (1931)
.++..||++|||+|+|+.||.+||||+||.. ....+|||||||||+||+++|++|||.+||++++|.|+.+|+.+|||
T Consensus 3 ~~~~~l~~~lg~~f~~~~ll~~Alth~S~~~~~~~~~~nerLefLGDavl~~~v~~~l~~~~p~~~~g~l~~~~~~lvsn 82 (229)
T PRK00102 3 KDLEELQKKLGYTFKDPELLIQALTHRSYANENKGLKHNERLEFLGDAVLELVVSEYLFKRFPDLDEGDLSKLRAALVRE 82 (229)
T ss_pred hhHHHHHHHhCCCCCCHHHHHHHhCccchhccCCCcccchhHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCH
Confidence 3578899999999999999999999999964 24579999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCchhhhccCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCceeEE
Q 000174 1668 ENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVW 1747 (1931)
Q Consensus 1668 ~~La~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~~~v~ 1747 (1931)
++|+.+|.++||++||++++.... .+....+|+++|+|||+|||||+|+|++ .++
T Consensus 83 ~~la~~a~~lgl~~~i~~~~~~~~-----------------------~~~~~~~k~~ad~~EA~iGAiyld~g~~--~~~ 137 (229)
T PRK00102 83 ESLAEIARELGLGEYLLLGKGEEK-----------------------SGGRRRPSILADAFEALIGAIYLDQGLE--AAR 137 (229)
T ss_pred HHHHHHHHHCCcHHHHccCcHHHH-----------------------cCCCCCccHHHHHHHHHHHHHHHhCCHH--HHH
Confidence 999999999999999998765321 1223568999999999999999999875 667
Q ss_pred eeeccCCCCCCCCC---CCCCCChHHHHHHHHhhcCC-ceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHH
Q 000174 1748 QVFQPLLDPMVTPE---TLPMHPVRELQERCQQQAEG-LEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKL 1818 (1931)
Q Consensus 1748 ~~~~~~l~~~i~~~---~~~~~P~~~L~e~~~~~~~~-~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~ 1818 (1931)
+|+..++.|++... ....||++.|+|+|++++.+ ++|++.. .| +.|+|+|+++|..+++|.|.|||+||+.
T Consensus 138 ~~i~~~~~~~l~~~~~~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~skk~Ae~~ 217 (229)
T PRK00102 138 KFILRLFEPRIEEIDLGDLVKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGTGSSKKEAEQA 217 (229)
T ss_pred HHHHHHHHHHHHhhccccccCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHH
Confidence 88887777765542 35689999999999998876 5998754 33 5799999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 000174 1819 AARNALAVLKE 1829 (1931)
Q Consensus 1819 AA~~AL~~L~~ 1829 (1931)
||+.||+.|+.
T Consensus 218 AA~~Al~~l~~ 228 (229)
T PRK00102 218 AAKQALKKLKE 228 (229)
T ss_pred HHHHHHHHHhh
Confidence 99999999874
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=389.29 Aligned_cols=343 Identities=19% Similarity=0.244 Sum_probs=236.0
Q ss_pred chhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHH
Q 000174 292 KSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEV 370 (1931)
Q Consensus 292 ~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~ 370 (1931)
..+.+.+.++.+|+++|.++++.+++ +|+|+.+|||||||++|++|+.+.+.. +++.++|||+||++|+.|+.++
T Consensus 25 l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~----~~~~~aL~l~PtraLa~q~~~~ 100 (742)
T TIGR03817 25 VVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALAD----DPRATALYLAPTKALAADQLRA 100 (742)
T ss_pred HHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh----CCCcEEEEEcChHHHHHHHHHH
Confidence 44788899999999999999999999 999999999999999999999887753 3457899999999999999999
Q ss_pred HHHHc--CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcc----cccccceeEEEEeCCCcccCC--C
Q 000174 371 IREQT--GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS----IIKMEAINLLILDECHHAVKK--H 442 (1931)
Q Consensus 371 l~~~~--~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~----~l~l~~i~lLV~DEaH~~~~~--~ 442 (1931)
++.+. ++++..+.|+...+ .. .....+++|+|+||++|...+-.. ...++++++|||||||.+.+. .
T Consensus 101 l~~l~~~~i~v~~~~Gdt~~~---~r--~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~ 175 (742)
T TIGR03817 101 VRELTLRGVRPATYDGDTPTE---ER--RWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGS 175 (742)
T ss_pred HHHhccCCeEEEEEeCCCCHH---HH--HHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHH
Confidence 99874 67888888876532 11 223357899999999987533211 113788999999999999762 1
Q ss_pred cHHHHHHHHHhhcC-CCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEec
Q 000174 443 PYSLVMSEFYHTTS-KEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYD 521 (1931)
Q Consensus 443 ~~~~im~~~~~~~~-~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~ 521 (1931)
....+++.+..... ....|+++++|||..+ +. ...+.++...+..+.. ...+.+...+..+.
T Consensus 176 ~~~~il~rL~ri~~~~g~~~q~i~~SATi~n------~~------~~~~~l~g~~~~~i~~-----~~~~~~~~~~~~~~ 238 (742)
T TIGR03817 176 HVALVLRRLRRLCARYGASPVFVLASATTAD------PA------AAASRLIGAPVVAVTE-----DGSPRGARTVALWE 238 (742)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEecCCCC------HH------HHHHHHcCCCeEEECC-----CCCCcCceEEEEec
Confidence 12233333322221 1235899999999764 11 1122222221111100 00011111111111
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhH
Q 000174 522 KAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQ 601 (1931)
Q Consensus 522 ~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~ 601 (1931)
+... ... ...+
T Consensus 239 p~~~----------------------------------------------~~~----------------------~~~~- 249 (742)
T TIGR03817 239 PPLT----------------------------------------------ELT----------------------GENG- 249 (742)
T ss_pred CCcc----------------------------------------------ccc----------------------cccc-
Confidence 0000 000 0000
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccc
Q 000174 602 WCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSH 681 (1931)
Q Consensus 602 ~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~ 681 (1931)
T Consensus 250 -------------------------------------------------------------------------------- 249 (742)
T TIGR03817 250 -------------------------------------------------------------------------------- 249 (742)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCC-C---CCCceeEEEEc
Q 000174 682 VVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELP-S---LSFVKSASLIG 757 (1931)
Q Consensus 682 ~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~-~---l~~~~~~~l~G 757 (1931)
..........+...|.+++. .+.++||||+++..++.|+..|+... . ..+.++..+||
T Consensus 250 -------------~~~r~~~~~~~~~~l~~l~~-----~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hg 311 (742)
T TIGR03817 250 -------------APVRRSASAEAADLLADLVA-----EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRA 311 (742)
T ss_pred -------------cccccchHHHHHHHHHHHHH-----CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheec
Confidence 00000001123334444443 25699999999999999999887521 0 01467889999
Q ss_pred cCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEEEE
Q 000174 758 HNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMI 832 (1931)
Q Consensus 758 ~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ivlv 832 (1931)
++++++|.+++++|++|++++||||+++++|||||++++||+||.|.+..+|+||+|||||.|...+.++
T Consensus 312 -----g~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~ 381 (742)
T TIGR03817 312 -----GYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVL 381 (742)
T ss_pred -----CCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999998754443
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=347.50 Aligned_cols=362 Identities=20% Similarity=0.288 Sum_probs=236.5
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHhc----------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhH
Q 000174 294 EAKEKMPEEQARPYQLDVLEQAKK----------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPL 363 (1931)
Q Consensus 294 ~~l~~~~~~~~~~~Q~eai~~~l~----------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~L 363 (1931)
+.+.++.+..++|+|..++++++. +|+.|.+|||||||++|.+||.+.+... .-+.-++|||+||++|
T Consensus 150 q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R--~v~~LRavVivPtr~L 227 (620)
T KOG0350|consen 150 QLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSR--PVKRLRAVVIVPTREL 227 (620)
T ss_pred HHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccC--CccceEEEEEeeHHHH
Confidence 558889999999999999999853 6899999999999999999999887642 2345789999999999
Q ss_pred HHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcC----CccEEEEcHHHHHHHHhc-ccccccceeEEEEeCC
Q 000174 364 VYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFD----TKQVLVMTAQILLNILRH-SIIKMEAINLLILDEC 435 (1931)
Q Consensus 364 v~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~----~~~IlV~Tpq~L~d~L~~-~~l~l~~i~lLV~DEa 435 (1931)
+.|.+++|..+. |+.|+...|..+... +..+-.-. ..+|+|+||++|.|+|.+ ..+.+..+.++|+|||
T Consensus 228 ~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~---E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEA 304 (620)
T KOG0350|consen 228 ALQVYDTFKRLNSGTGLAVCSLSGQNSLED---EARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEA 304 (620)
T ss_pred HHHHHHHHHHhccCCceEEEecccccchHH---HHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechH
Confidence 999999999986 788888888765422 22111112 349999999999999985 5689999999999999
Q ss_pred CcccCCCcHHHHHHHHHhhcCCCC----CcEEEEEe--ecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhh
Q 000174 436 HHAVKKHPYSLVMSEFYHTTSKEK----RPSVFGMT--ASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKH 509 (1931)
Q Consensus 436 H~~~~~~~~~~im~~~~~~~~~~~----~p~iLgLT--ATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~ 509 (1931)
||+++. .|...+......+.... .-.+|-+. ++|.. +..+...++ .
T Consensus 305 DRll~q-sfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~-------------~~e~~t~~~--------------~ 356 (620)
T KOG0350|consen 305 DRLLDQ-SFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTV-------------LSELLTKLG--------------K 356 (620)
T ss_pred HHHHHH-HHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchh-------------hHHHHhhcC--------------C
Confidence 999985 67766655544332210 01111111 12221 111111110 0
Q ss_pred CCCCceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHH
Q 000174 510 VPMPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKL 589 (1931)
Q Consensus 510 ~~~p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~ 589 (1931)
...|.-..+ + ...+.+.-..+.+.-... +.+..+. .
T Consensus 357 ~~~~l~kL~-~---------satLsqdP~Kl~~l~l~~--------------------Prl~~v~---~----------- 392 (620)
T KOG0350|consen 357 LYPPLWKLV-F---------SATLSQDPSKLKDLTLHI--------------------PRLFHVS---K----------- 392 (620)
T ss_pred cCchhHhhh-c---------chhhhcChHHHhhhhcCC--------------------CceEEee---c-----------
Confidence 000100000 0 000000000000000000 0000000 0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCc
Q 000174 590 RAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGT 669 (1931)
Q Consensus 590 ~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 669 (1931)
...|.+ .+ .
T Consensus 393 -------~~~~ry---------------------sl-------------------------------------------p 401 (620)
T KOG0350|consen 393 -------PLIGRY---------------------SL-------------------------------------------P 401 (620)
T ss_pred -------ccceee---------------------ec-------------------------------------------C
Confidence 000000 00 0
Q ss_pred cccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCC
Q 000174 670 NEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSF 749 (1931)
Q Consensus 670 ~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~ 749 (1931)
+.|....+ ....--|...+..++..+ +-.++|+|+++..++..|+.+|+-.-.-..
T Consensus 402 ~~l~~~~v---------------------v~~~~~kpl~~~~lI~~~---k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~ 457 (620)
T KOG0350|consen 402 SSLSHRLV---------------------VTEPKFKPLAVYALITSN---KLNRTLCFVNSVSSANRLAHVLKVEFCSDN 457 (620)
T ss_pred hhhhhcee---------------------ecccccchHhHHHHHHHh---hcceEEEEecchHHHHHHHHHHHHHhcccc
Confidence 00000000 001112444556666554 567999999999999999999983211145
Q ss_pred ceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEE
Q 000174 750 VKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYI 829 (1931)
Q Consensus 750 ~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~i 829 (1931)
+++..+.| ..+.+.|.+.+++|++|++++|||||+++||||+-+++.|||||+|.+..+||||+||++|+|+.+.
T Consensus 458 ~~~s~~t~-----~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~ 532 (620)
T KOG0350|consen 458 FKVSEFTG-----QLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGY 532 (620)
T ss_pred chhhhhhh-----hhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCce
Confidence 67777888 8999999999999999999999999999999999999999999999999999999999999998855
Q ss_pred EEE
Q 000174 830 LMI 832 (1931)
Q Consensus 830 vlv 832 (1931)
.+.
T Consensus 533 a~t 535 (620)
T KOG0350|consen 533 AIT 535 (620)
T ss_pred EEE
Confidence 444
|
|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=339.16 Aligned_cols=341 Identities=20% Similarity=0.218 Sum_probs=257.6
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhh---cCCCcEEEE
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQR---QNKKMLAVF 356 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~---~~~~~~vL~ 356 (1931)
..|+..+..+...+++.+.|+.+||-+|..+||.+++ +|+++.+.||||||.+|++|+.+.+..... ...+..++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 4566777776677999999999999999999999999 999999999999999999999887765432 234568999
Q ss_pred EeCChhHHHHHHHHHHHHc-----CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhccc-ccccceeEE
Q 000174 357 LVPKVPLVYQQAEVIREQT-----GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSI-IKMEAINLL 430 (1931)
Q Consensus 357 LvPT~~Lv~Q~~~~l~~~~-----~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~-l~l~~i~lL 430 (1931)
||||++||.|.+.++.+.. .+++.-++.+++... .+.| +...++|||+||+.|+.++..+. ..+..+.+|
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv--~~~~--L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~L 174 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSV--NSVA--LMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFL 174 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHH--HHHH--HccCCCeEEeChHHHHHHHhhccchhhhheeeE
Confidence 9999999999999999854 355665665554321 1223 45789999999999999999887 678899999
Q ss_pred EEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhC
Q 000174 431 ILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHV 510 (1931)
Q Consensus 431 V~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~ 510 (1931)
|+||||-++. .+|...|+.+....|. ..+.++||||... .+..|..++ +
T Consensus 175 VvDEADLlls-fGYeedlk~l~~~LPr--~~Q~~LmSATl~d------------Dv~~LKkL~----------------l 223 (569)
T KOG0346|consen 175 VVDEADLLLS-FGYEEDLKKLRSHLPR--IYQCFLMSATLSD------------DVQALKKLF----------------L 223 (569)
T ss_pred Eechhhhhhh-cccHHHHHHHHHhCCc--hhhheeehhhhhh------------HHHHHHHHh----------------c
Confidence 9999999998 5999999999988774 4778999999752 233333221 1
Q ss_pred CCCceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHH
Q 000174 511 PMPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLR 590 (1931)
Q Consensus 511 ~~p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~ 590 (1931)
+.|... ......... .+
T Consensus 224 ~nPviL--kl~e~el~~-------------------~d------------------------------------------ 240 (569)
T KOG0346|consen 224 HNPVIL--KLTEGELPN-------------------PD------------------------------------------ 240 (569)
T ss_pred cCCeEE--EeccccCCC-------------------cc------------------------------------------
Confidence 222211 100000000 00
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcc
Q 000174 591 AINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTN 670 (1931)
Q Consensus 591 ~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 670 (1931)
.+.+
T Consensus 241 -------qL~Q--------------------------------------------------------------------- 244 (569)
T KOG0346|consen 241 -------QLTQ--------------------------------------------------------------------- 244 (569)
T ss_pred -------cceE---------------------------------------------------------------------
Confidence 0000
Q ss_pred ccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCc
Q 000174 671 EIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFV 750 (1931)
Q Consensus 671 ~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~ 750 (1931)
.........|+..|.-+|+-- --..|.||||++.+.+..|.-+|.. -|+
T Consensus 245 -------------------------y~v~cse~DKflllyallKL~--LI~gKsliFVNtIdr~YrLkLfLeq----FGi 293 (569)
T KOG0346|consen 245 -------------------------YQVKCSEEDKFLLLYALLKLR--LIRGKSLIFVNTIDRCYRLKLFLEQ----FGI 293 (569)
T ss_pred -------------------------EEEEeccchhHHHHHHHHHHH--HhcCceEEEEechhhhHHHHHHHHH----hCc
Confidence 000001123444444433321 1246899999999999999999998 689
Q ss_pred eeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEec-----------------------------------ccccCCC
Q 000174 751 KSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATS-----------------------------------VAEEGLD 795 (1931)
Q Consensus 751 ~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTd-----------------------------------VaeeGlD 795 (1931)
+...+.| .++...|..++++|+.|-++++|||| -.+||||
T Consensus 294 ksciLNs-----eLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGID 368 (569)
T KOG0346|consen 294 KSCILNS-----ELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGID 368 (569)
T ss_pred Hhhhhcc-----cccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhcccc
Confidence 9999999 99999999999999999999999999 2358999
Q ss_pred CCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEEE
Q 000174 796 IRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILM 831 (1931)
Q Consensus 796 ip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ivl 831 (1931)
+..|+.|||||+|.++.+||||+|||+|.+.+++++
T Consensus 369 F~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~Gtal 404 (569)
T KOG0346|consen 369 FHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTAL 404 (569)
T ss_pred chheeeeeecCCCCchHHHHHhccccccCCCCCceE
Confidence 999999999999999999999999999998875443
|
|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=330.71 Aligned_cols=339 Identities=21% Similarity=0.229 Sum_probs=257.0
Q ss_pred CCCCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc---cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEE
Q 000174 279 NGINQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK---KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAV 355 (1931)
Q Consensus 279 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~---~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL 355 (1931)
+-.+|++...-++..+.+-.++|.+|..+|..++|.++. +|.|..+..|+|||.+|++.++.... .....+.++
T Consensus 88 S~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd---~~~~~PQ~i 164 (477)
T KOG0332|consen 88 SAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVD---PDVVVPQCI 164 (477)
T ss_pred ccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcC---ccccCCCce
Confidence 456677777777777888899999999999999999998 99999999999999999998655433 233456799
Q ss_pred EEeCChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhc-ccccccceeEEE
Q 000174 356 FLVPKVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH-SIIKMEAINLLI 431 (1931)
Q Consensus 356 ~LvPT~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~-~~l~l~~i~lLV 431 (1931)
.|+||++||.|..+++.+.- ++......-+.. .-+-..-..+|+|+||+.++|++.. ..+.+..+..+|
T Consensus 165 CLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk-------~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfV 237 (477)
T KOG0332|consen 165 CLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSK-------AKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFV 237 (477)
T ss_pred eeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcc-------cccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEE
Confidence 99999999999999988743 333333332221 1111123568999999999999887 778899999999
Q ss_pred EeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCC
Q 000174 432 LDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVP 511 (1931)
Q Consensus 432 ~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~ 511 (1931)
+|||++|.+..+|...-..++...+. ..+++++|||-.. . -.....+.++
T Consensus 238 lDEAD~Mi~tqG~~D~S~rI~~~lP~--~~QllLFSATf~e------------~----------------V~~Fa~kivp 287 (477)
T KOG0332|consen 238 LDEADVMIDTQGFQDQSIRIMRSLPR--NQQLLLFSATFVE------------K----------------VAAFALKIVP 287 (477)
T ss_pred ecchhhhhhcccccccchhhhhhcCC--cceEEeeechhHH------------H----------------HHHHHHHhcC
Confidence 99999999877777766667766653 4789999999542 1 1122335555
Q ss_pred CCceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHH
Q 000174 512 MPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRA 591 (1931)
Q Consensus 512 ~p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~ 591 (1931)
.|+..++.-+...
T Consensus 288 n~n~i~Lk~eel~------------------------------------------------------------------- 300 (477)
T KOG0332|consen 288 NANVIILKREELA------------------------------------------------------------------- 300 (477)
T ss_pred CCceeeeehhhcc-------------------------------------------------------------------
Confidence 5554443211100
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccc
Q 000174 592 INYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNE 671 (1931)
Q Consensus 592 ~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 671 (1931)
+..+.+ .|+.
T Consensus 301 ----L~~IkQ------------------------------lyv~------------------------------------ 310 (477)
T KOG0332|consen 301 ----LDNIKQ------------------------------LYVL------------------------------------ 310 (477)
T ss_pred ----ccchhh------------------------------heee------------------------------------
Confidence 000000 0000
Q ss_pred cccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCce
Q 000174 672 IEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVK 751 (1931)
Q Consensus 672 l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~ 751 (1931)
-.....|.+.|.++.... .-.+.||||.++.+|.+|+..|.. .|..
T Consensus 311 ---------------------------C~~~~~K~~~l~~lyg~~---tigqsiIFc~tk~ta~~l~~~m~~----~Gh~ 356 (477)
T KOG0332|consen 311 ---------------------------CACRDDKYQALVNLYGLL---TIGQSIIFCHTKATAMWLYEEMRA----EGHQ 356 (477)
T ss_pred ---------------------------ccchhhHHHHHHHHHhhh---hhhheEEEEeehhhHHHHHHHHHh----cCce
Confidence 001234666776654332 346899999999999999999998 7899
Q ss_pred eEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCC------CHHHHHHhhccCCCCC
Q 000174 752 SASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAK------TVLAYIQSRGRARKPG 825 (1931)
Q Consensus 752 ~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~------s~~~yiQr~GRa~R~G 825 (1931)
+..+|| ++...+|..++++||.|..+|||+|+|.+||||++.|++|||||+|- ++..|+||+|||||.|
T Consensus 357 V~~l~G-----~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFG 431 (477)
T KOG0332|consen 357 VSLLHG-----DLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFG 431 (477)
T ss_pred eEEeec-----cchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhccccccc
Confidence 999999 99999999999999999999999999999999999999999999995 7899999999999999
Q ss_pred CcEEEEEe
Q 000174 826 SDYILMIE 833 (1931)
Q Consensus 826 s~~ivlv~ 833 (1931)
.+++.+--
T Consensus 432 kkG~a~n~ 439 (477)
T KOG0332|consen 432 KKGLAINL 439 (477)
T ss_pred ccceEEEe
Confidence 99666543
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=366.86 Aligned_cols=321 Identities=17% Similarity=0.230 Sum_probs=226.9
Q ss_pred cCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcC
Q 000174 298 KMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG 376 (1931)
Q Consensus 298 ~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~ 376 (1931)
..|+..+||+|.++++.+++ +|+++.+|||+|||++|++|+.. ....+|||+||++|+.||...++. .+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~---------~~~~~lVi~P~~~L~~dq~~~l~~-~g 75 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC---------SDGITLVISPLISLMEDQVLQLKA-SG 75 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH---------cCCcEEEEecHHHHHHHHHHHHHH-cC
Confidence 47899999999999999998 99999999999999999999753 135699999999999999999986 58
Q ss_pred CcEEEEeCCCcccccchHHHHhhc-CCccEEEEcHHHHHHHH-hcccc-cccceeEEEEeCCCcccCC-CcHHHHHHHHH
Q 000174 377 YVVGHYCGEMGQDFWDAQRWQREF-DTKQVLVMTAQILLNIL-RHSII-KMEAINLLILDECHHAVKK-HPYSLVMSEFY 452 (1931)
Q Consensus 377 l~v~~~~G~~~~~~~~~~~w~~~~-~~~~IlV~Tpq~L~d~L-~~~~l-~l~~i~lLV~DEaH~~~~~-~~~~~im~~~~ 452 (1931)
+.+..+.|+..... ....+.... ...+|+++||+++.... ....+ ...++++|||||||++... +.|+.....+.
T Consensus 76 i~~~~l~~~~~~~~-~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~ 154 (470)
T TIGR00614 76 IPATFLNSSQSKEQ-QKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALG 154 (470)
T ss_pred CcEEEEeCCCCHHH-HHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHH
Confidence 88888887755332 122233332 35899999999976422 11112 5678999999999999753 45665544432
Q ss_pred hhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhhhHHHHH
Q 000174 453 HTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQ 532 (1931)
Q Consensus 453 ~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~ 532 (1931)
.........++++||||+.. .. ...+...++ +..|......++....
T Consensus 155 ~l~~~~~~~~~l~lTAT~~~--------~~---~~di~~~l~---------------l~~~~~~~~s~~r~nl------- 201 (470)
T TIGR00614 155 SLKQKFPNVPIMALTATASP--------SV---REDILRQLN---------------LKNPQIFCTSFDRPNL------- 201 (470)
T ss_pred HHHHHcCCCceEEEecCCCH--------HH---HHHHHHHcC---------------CCCCcEEeCCCCCCCc-------
Confidence 22111223678999999863 00 011111111 0011100000000000
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000174 533 LKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFL 612 (1931)
Q Consensus 533 i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l 612 (1931)
.+.
T Consensus 202 -------------------------------------~~~---------------------------------------- 204 (470)
T TIGR00614 202 -------------------------------------YYE---------------------------------------- 204 (470)
T ss_pred -------------------------------------EEE----------------------------------------
Confidence 000
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhh
Q 000174 613 TALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVI 692 (1931)
Q Consensus 613 ~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~ 692 (1931)
T Consensus 205 -------------------------------------------------------------------------------- 204 (470)
T TIGR00614 205 -------------------------------------------------------------------------------- 204 (470)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHH
Q 000174 693 IGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQET 772 (1931)
Q Consensus 693 i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~ 772 (1931)
+ ......++..+.+.+... .++.++||||+++..++.+++.|.. .++++..+|| +|++.+|.++
T Consensus 205 ----v-~~~~~~~~~~l~~~l~~~--~~~~~~IIF~~s~~~~e~la~~L~~----~g~~~~~~H~-----~l~~~eR~~i 268 (470)
T TIGR00614 205 ----V-RRKTPKILEDLLRFIRKE--FKGKSGIIYCPSRKKSEQVTASLQN----LGIAAGAYHA-----GLEISARDDV 268 (470)
T ss_pred ----E-EeCCccHHHHHHHHHHHh--cCCCceEEEECcHHHHHHHHHHHHh----cCCCeeEeeC-----CCCHHHHHHH
Confidence 0 000001233344444321 2456789999999999999999988 6889999999 9999999999
Q ss_pred HHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--EEEEEecC
Q 000174 773 IAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--YILMIERG 835 (1931)
Q Consensus 773 l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivlv~~~ 835 (1931)
+++|++|+++|||||+++++|||+|+|++||+||+|.++..|+||+|||||.|.. ++++....
T Consensus 269 ~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~ 333 (470)
T TIGR00614 269 HHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPA 333 (470)
T ss_pred HHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechh
Confidence 9999999999999999999999999999999999999999999999999999866 45554433
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR02191 RNaseIII ribonuclease III, bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-36 Score=343.66 Aligned_cols=208 Identities=37% Similarity=0.500 Sum_probs=181.3
Q ss_pred HHHHcCCCcCCHHHHHHHhcCCCCCCC---CCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHHHH
Q 000174 1595 LEDALKIKFKDRGLLVEAITHASRPSS---GVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFA 1671 (1931)
Q Consensus 1595 le~~lgy~F~~~~LL~~AlTH~S~~~~---~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~La 1671 (1931)
||++|||+|+|+.||.+||||+||... ...+|||||||||+||++++++|||.+||+.++|.|+.+|+.+|||.+|+
T Consensus 1 ~e~~lgy~F~~~~ll~~Alth~S~~~~~~~~~~~nerLe~lGd~vl~~~~~~~l~~~~p~~~~~~l~~~~~~lvsn~~la 80 (220)
T TIGR02191 1 LEKRLGYKFKNKELLEQALTHSSYANEHHKGVKNNERLEFLGDAVLGLVVAEYLFKNFPDLSEGELSKLRAALVSEESLA 80 (220)
T ss_pred ChHHhCCCcCCHHHHHHHhcCcccccccccCccchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCHHHHH
Confidence 589999999999999999999998643 45699999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCchhhhccCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCceeEEeeec
Q 000174 1672 RVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQ 1751 (1931)
Q Consensus 1672 ~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~~~v~~~~~ 1751 (1931)
.+|.++||+++|+.++.... ......+|+++|+|||+|||||+|+|+ +.+++|+.
T Consensus 81 ~~a~~~gl~~~i~~~~~~~~-----------------------~~~~~~~k~~ad~~eAliGAiyld~g~--~~~~~~i~ 135 (220)
T TIGR02191 81 EVARELGLGKFLLLGKGEEK-----------------------SGGRRRESILADAFEALIGAIYLDSGL--EAARKFIL 135 (220)
T ss_pred HHHHHCCcHHHhccCchHhh-----------------------cCCcccchHHHHHHHHHHHHHHHhCCH--HHHHHHHH
Confidence 99999999999998765321 112456999999999999999999994 46778887
Q ss_pred cCCCCCCCC---CCCCCCChHHHHHHHHhhcCC-ceeEEecc-C----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHH
Q 000174 1752 PLLDPMVTP---ETLPMHPVRELQERCQQQAEG-LEYKASRS-G----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARN 1822 (1931)
Q Consensus 1752 ~~l~~~i~~---~~~~~~P~~~L~e~~~~~~~~-~~y~~~~~-g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~ 1822 (1931)
.++.|.+.. .....||++.|+|+|++++.. ++|++... | +.|+|.|+++|..+++|.|.|||+||+.||+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g~g~skk~A~~~AA~~ 215 (220)
T TIGR02191 136 KLLIPRIDAIEKEETLKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKGKSKKEAEQNAAKA 215 (220)
T ss_pred HHHHHHHHhhhcccccCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHH
Confidence 777776543 235689999999999987764 79987533 2 48999999999999999999999999999999
Q ss_pred HHHHH
Q 000174 1823 ALAVL 1827 (1931)
Q Consensus 1823 AL~~L 1827 (1931)
||+.|
T Consensus 216 Al~~l 220 (220)
T TIGR02191 216 ALEKL 220 (220)
T ss_pred HHHhC
Confidence 99865
|
This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family. |
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=368.03 Aligned_cols=318 Identities=17% Similarity=0.193 Sum_probs=221.8
Q ss_pred cCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcC
Q 000174 298 KMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG 376 (1931)
Q Consensus 298 ~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~ 376 (1931)
-.|+..+||+|.++|+.++. +|+|+.+|||+|||++|++|++.. ...+|||+|+++|+.+|...+.. .+
T Consensus 455 ~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~---------~GiTLVISPLiSLmqDQV~~L~~-~G 524 (1195)
T PLN03137 455 VFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC---------PGITLVISPLVSLIQDQIMNLLQ-AN 524 (1195)
T ss_pred HcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc---------CCcEEEEeCHHHHHHHHHHHHHh-CC
Confidence 46899999999999999999 999999999999999999998631 35699999999999988777765 58
Q ss_pred CcEEEEeCCCcccccchHHHHhh---cCCccEEEEcHHHHHH--HHhccc--c-cccceeEEEEeCCCcccCC-CcHHHH
Q 000174 377 YVVGHYCGEMGQDFWDAQRWQRE---FDTKQVLVMTAQILLN--ILRHSI--I-KMEAINLLILDECHHAVKK-HPYSLV 447 (1931)
Q Consensus 377 l~v~~~~G~~~~~~~~~~~w~~~---~~~~~IlV~Tpq~L~d--~L~~~~--l-~l~~i~lLV~DEaH~~~~~-~~~~~i 447 (1931)
+++..+.|++..... ...+... ....+||++||++|.. .+.+.. + ....+.+|||||||++... |.|+..
T Consensus 525 I~Aa~L~s~~s~~eq-~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpd 603 (1195)
T PLN03137 525 IPAASLSAGMEWAEQ-LEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPD 603 (1195)
T ss_pred CeEEEEECCCCHHHH-HHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHH
Confidence 888889888764321 1222222 2468999999999862 122111 1 2345899999999999863 456665
Q ss_pred HHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhhh
Q 000174 448 MSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLW 527 (1931)
Q Consensus 448 m~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~ 527 (1931)
.+.+-.........++++||||... .....+...-...+..++. ....+|......
T Consensus 604 Yr~L~~Lr~~fp~vPilALTATAT~--------~V~eDI~~~L~l~~~~vfr--------~Sf~RpNL~y~V-------- 659 (1195)
T PLN03137 604 YQGLGILKQKFPNIPVLALTATATA--------SVKEDVVQALGLVNCVVFR--------QSFNRPNLWYSV-------- 659 (1195)
T ss_pred HHHHHHHHHhCCCCCeEEEEecCCH--------HHHHHHHHHcCCCCcEEee--------cccCccceEEEE--------
Confidence 5443211111123568899999652 1111111110000000000 000011100000
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000174 528 SLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKV 607 (1931)
Q Consensus 528 ~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~ 607 (1931)
.
T Consensus 660 ----------------------------------------------v--------------------------------- 660 (1195)
T PLN03137 660 ----------------------------------------------V--------------------------------- 660 (1195)
T ss_pred ----------------------------------------------e---------------------------------
Confidence 0
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCC
Q 000174 608 AQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGE 687 (1931)
Q Consensus 608 ~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e 687 (1931)
T Consensus 661 -------------------------------------------------------------------------------- 660 (1195)
T PLN03137 661 -------------------------------------------------------------------------------- 660 (1195)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHH
Q 000174 688 HVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTF 767 (1931)
Q Consensus 688 ~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~ 767 (1931)
. .....+..+.+++... ..+.++||||.++..++.|++.|.. .++++..+|| +|++.
T Consensus 661 -----------~-k~kk~le~L~~~I~~~--~~~esgIIYC~SRke~E~LAe~L~~----~Gika~~YHA-----GLs~e 717 (1195)
T PLN03137 661 -----------P-KTKKCLEDIDKFIKEN--HFDECGIIYCLSRMDCEKVAERLQE----FGHKAAFYHG-----SMDPA 717 (1195)
T ss_pred -----------c-cchhHHHHHHHHHHhc--ccCCCceeEeCchhHHHHHHHHHHH----CCCCeeeeeC-----CCCHH
Confidence 0 0000111222333221 1245799999999999999999987 6899999999 99999
Q ss_pred HHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--EEEEE
Q 000174 768 QMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--YILMI 832 (1931)
Q Consensus 768 ~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivlv 832 (1931)
+|..++++|++|+++|||||+++++|||+|+|++||+||+|.++..|+||+|||||.|.. ++++.
T Consensus 718 eR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 718 QRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred HHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999976 44443
|
|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=338.66 Aligned_cols=343 Identities=18% Similarity=0.245 Sum_probs=264.2
Q ss_pred ccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCCh
Q 000174 283 QECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKV 361 (1931)
Q Consensus 283 ~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~ 361 (1931)
+++..........|...+|..|+++|..|||.++. -|.||.+..|+|||++|..++.+-+.. ......++||+|||
T Consensus 27 fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~---~~~~~q~~Iv~PTR 103 (980)
T KOG4284|consen 27 FEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS---RSSHIQKVIVTPTR 103 (980)
T ss_pred HHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc---ccCcceeEEEecch
Confidence 34444443445778888999999999999999998 899999999999999999877654442 34567899999999
Q ss_pred hHHHHHHHHHHHH----cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCc
Q 000174 362 PLVYQQAEVIREQ----TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHH 437 (1931)
Q Consensus 362 ~Lv~Q~~~~l~~~----~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~ 437 (1931)
+++.|+.+.+.+. .|+++.++.||..... -...++.++|+|+|||++..++..+.+.++.++|+|+||||.
T Consensus 104 EiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~-----d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADk 178 (980)
T KOG4284|consen 104 EIAVQIKETVRKVAPSFTGARCSVFIGGTAHKL-----DLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADK 178 (980)
T ss_pred hhhhHHHHHHHHhcccccCcceEEEecCchhhh-----hhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHh
Confidence 9999999999874 4899999999986532 122347889999999999999999999999999999999999
Q ss_pred ccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeE
Q 000174 438 AVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVV 517 (1931)
Q Consensus 438 ~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~ 517 (1931)
+.....|...+..++..+|.. .+++.+|||-.. .|..+ +.+++..|..+.
T Consensus 179 L~~t~sfq~~In~ii~slP~~--rQv~a~SATYp~------------nLdn~----------------Lsk~mrdp~lVr 228 (980)
T KOG4284|consen 179 LMDTESFQDDINIIINSLPQI--RQVAAFSATYPR------------NLDNL----------------LSKFMRDPALVR 228 (980)
T ss_pred hhchhhHHHHHHHHHHhcchh--heeeEEeccCch------------hHHHH----------------HHHHhcccceee
Confidence 999779999999999988765 789999999432 11111 123333333221
Q ss_pred EEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHH
Q 000174 518 VEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALG 597 (1931)
Q Consensus 518 ~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~ 597 (1931)
..-+.. +++|.
T Consensus 229 ~n~~d~------------------------------~L~Gi--------------------------------------- 239 (980)
T KOG4284|consen 229 FNADDV------------------------------QLFGI--------------------------------------- 239 (980)
T ss_pred cccCCc------------------------------eeech---------------------------------------
Confidence 100000 00000
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccc
Q 000174 598 ELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGEL 677 (1931)
Q Consensus 598 ~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l 677 (1931)
.++ ...+++ . ...++
T Consensus 240 --kQy-------------------------------v~~~~s-----~--------------------nnsve------- 254 (980)
T KOG4284|consen 240 --KQY-------------------------------VVAKCS-----P--------------------NNSVE------- 254 (980)
T ss_pred --hhe-------------------------------eeeccC-----C--------------------cchHH-------
Confidence 000 000000 0 00000
Q ss_pred cccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEc
Q 000174 678 LDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIG 757 (1931)
Q Consensus 678 ~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G 757 (1931)
..-.|++.|-+++... +-.++||||.....|+-++..|+. .|+.+.+|.|
T Consensus 255 -----------------------emrlklq~L~~vf~~i---py~QAlVF~~~~sra~~~a~~L~s----sG~d~~~ISg 304 (980)
T KOG4284|consen 255 -----------------------EMRLKLQKLTHVFKSI---PYVQALVFCDQISRAEPIATHLKS----SGLDVTFISG 304 (980)
T ss_pred -----------------------HHHHHHHHHHHHHhhC---chHHHHhhhhhhhhhhHHHHHhhc----cCCCeEEecc
Confidence 0113666666666554 456899999999999999999998 7999999999
Q ss_pred cCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEEEE
Q 000174 758 HNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMI 832 (1931)
Q Consensus 758 ~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ivlv 832 (1931)
.|+|.+|..+++.+|.-.++|||+||..+||||-++||+|||.|+|.+-.+|.||+|||||.|+.++.++
T Consensus 305 -----aM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT 374 (980)
T KOG4284|consen 305 -----AMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVT 374 (980)
T ss_pred -----ccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999965554
|
|
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=364.45 Aligned_cols=342 Identities=23% Similarity=0.311 Sum_probs=266.3
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhh--hcCCCcEEEEE
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQ--RQNKKMLAVFL 357 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~--~~~~~~~vL~L 357 (1931)
.+|...+........++++++.+||++|.+|||.++. +++|..+.||||||+.|++|+..++...+ ..+.++.+|||
T Consensus 365 ~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~ 444 (997)
T KOG0334|consen 365 TSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALIL 444 (997)
T ss_pred chHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEE
Confidence 4455555555566778999999999999999999999 99999999999999999999876655433 24678999999
Q ss_pred eCChhHHHHHHHHHHHH---cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhccc---ccccceeEEE
Q 000174 358 VPKVPLVYQQAEVIREQ---TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSI---IKMEAINLLI 431 (1931)
Q Consensus 358 vPT~~Lv~Q~~~~l~~~---~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~---l~l~~i~lLV 431 (1931)
+||++|+.|+.+.++.+ +++++..++|+... ..+...+..++.|+||||++..|.+.... ..+.++.++|
T Consensus 445 aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~----~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv 520 (997)
T KOG0334|consen 445 APTRELAMQIHREVRKFLKLLGIRVVCVYGGSGI----SQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLV 520 (997)
T ss_pred cCCHHHHHHHHHHHHHHHhhcCceEEEecCCccH----HHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceee
Confidence 99999999999998876 48999999998764 34455556789999999999999885533 3567777999
Q ss_pred EeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCC
Q 000174 432 LDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVP 511 (1931)
Q Consensus 432 ~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~ 511 (1931)
+||||+|. ++.|......++..... ..+.+++|||-.+ .+..|. .+...
T Consensus 521 ~deaDrmf-dmgfePq~~~Ii~nlrp--drQtvlfSatfpr------------~m~~la----------------~~vl~ 569 (997)
T KOG0334|consen 521 LDEADRMF-DMGFEPQITRILQNLRP--DRQTVLFSATFPR------------SMEALA----------------RKVLK 569 (997)
T ss_pred echhhhhh-eeccCcccchHHhhcch--hhhhhhhhhhhhH------------HHHHHH----------------HHhhc
Confidence 99999999 46776655446554432 3678888998432 122211 13334
Q ss_pred CCceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHH
Q 000174 512 MPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRA 591 (1931)
Q Consensus 512 ~p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~ 591 (1931)
+|.++++.+.....
T Consensus 570 ~Pveiiv~~~svV~------------------------------------------------------------------ 583 (997)
T KOG0334|consen 570 KPVEIIVGGRSVVC------------------------------------------------------------------ 583 (997)
T ss_pred CCeeEEEccceeEe------------------------------------------------------------------
Confidence 66664443221000
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccc
Q 000174 592 INYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNE 671 (1931)
Q Consensus 592 ~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 671 (1931)
+ .
T Consensus 584 ---------------------k----------------------~----------------------------------- 585 (997)
T KOG0334|consen 584 ---------------------K----------------------E----------------------------------- 585 (997)
T ss_pred ---------------------c----------------------c-----------------------------------
Confidence 0 0
Q ss_pred cccccccccccccCCCchhhhhhhccc-CCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCc
Q 000174 672 IEEGELLDSHVVSGGEHVDVIIGAAVA-DGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFV 750 (1931)
Q Consensus 672 l~~~~l~~~~~~s~~e~~~~~i~~~~~-~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~ 750 (1931)
+.+.+. ....+.|+.+|+++|..+. .+.++||||.....|+.|.+-|.+ .++
T Consensus 586 ---------------------V~q~v~V~~~e~eKf~kL~eLl~e~~--e~~~tiiFv~~qe~~d~l~~~L~~----ag~ 638 (997)
T KOG0334|consen 586 ---------------------VTQVVRVCAIENEKFLKLLELLGERY--EDGKTIIFVDKQEKADALLRDLQK----AGY 638 (997)
T ss_pred ---------------------ceEEEEEecCchHHHHHHHHHHHHHh--hcCCEEEEEcCchHHHHHHHHHHh----cCc
Confidence 000000 0124579999999999873 378999999999999999999987 689
Q ss_pred eeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--E
Q 000174 751 KSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--Y 828 (1931)
Q Consensus 751 ~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ 828 (1931)
.+..+|| +.++.+|..+++.||+|.+++||||+|+++|||+.+..+|||||.|....+|+||.|||||.|.+ .
T Consensus 639 ~~~slHG-----gv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~A 713 (997)
T KOG0334|consen 639 NCDSLHG-----GVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAA 713 (997)
T ss_pred chhhhcC-----CCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCcccee
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999998877 3
Q ss_pred EEEEe
Q 000174 829 ILMIE 833 (1931)
Q Consensus 829 ivlv~ 833 (1931)
+.|+.
T Consensus 714 vtFi~ 718 (997)
T KOG0334|consen 714 VTFIT 718 (997)
T ss_pred EEEeC
Confidence 44444
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=369.43 Aligned_cols=407 Identities=18% Similarity=0.185 Sum_probs=240.1
Q ss_pred CCCcHHHHHHHHHHhc---cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCc
Q 000174 302 EQARPYQLDVLEQAKK---KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYV 378 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~---~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~ 378 (1931)
..|.|||..++..++. .++|+++++|+|||+.+++.+.+++. .+...++|||||+ .|+.||..++.+.+++.
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~----~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~ 225 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLL----TGRAERVLILVPE-TLQHQWLVEMLRRFNLR 225 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHH----cCCCCcEEEEcCH-HHHHHHHHHHHHHhCCC
Confidence 6799999999988766 57999999999999999999887765 2445689999997 89999999999999988
Q ss_pred EEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHh-cccccccceeEEEEeCCCcccCC----C-cHHHHHHHHH
Q 000174 379 VGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILR-HSIIKMEAINLLILDECHHAVKK----H-PYSLVMSEFY 452 (1931)
Q Consensus 379 v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~-~~~l~l~~i~lLV~DEaH~~~~~----~-~~~~im~~~~ 452 (1931)
+.++.++......... ...+...+++|+|++.+...-. ...+.-..|++||+|||||+... . .|. .+..+.
T Consensus 226 ~~i~~~~~~~~~~~~~--~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~-~v~~La 302 (956)
T PRK04914 226 FSLFDEERYAEAQHDA--DNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQ-VVEQLA 302 (956)
T ss_pred eEEEcCcchhhhcccc--cCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHH-HHHHHh
Confidence 8887665432211100 0123467899999999875221 11233458999999999999832 1 122 222232
Q ss_pred hhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhh-hC-CCCceeEEE--eccchhhhH
Q 000174 453 HTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEK-HV-PMPSEVVVE--YDKAASLWS 528 (1931)
Q Consensus 453 ~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~-~~-~~p~e~~~~--y~~~~~~~~ 528 (1931)
. ..+++|+|||||.+.+. ..+..+-.++++..+.. ...+.. .. ..|.-..+. .........
T Consensus 303 ~-----~~~~~LLLTATP~q~~~--------~e~falL~lLdP~~f~~--~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~ 367 (956)
T PRK04914 303 E-----VIPGVLLLTATPEQLGQ--------ESHFARLRLLDPDRFHD--YEAFVEEQQQYRPVADAVQALLAGEKLSDD 367 (956)
T ss_pred h-----ccCCEEEEEcCcccCCc--------HHHHHhhhhhCCCcCCC--HHHHHHHHHhhHHHHHHHHHHhcCCcCCHH
Confidence 2 24789999999996332 23344446666655422 222211 00 000000000 000000000
Q ss_pred HHHHHHHHHH--HHHHHHh---------------------hhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHH
Q 000174 529 LHEQLKQMEV--AVEEAAQ---------------------SSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANL 585 (1931)
Q Consensus 529 l~~~i~~l~~--~~~~~~~---------------------~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l 585 (1931)
..+.+..+.. ...+.+. ..+......+.+.| ..+.+...|......-.+
T Consensus 368 ~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR--------~~v~~fp~R~~~~~~l~~ 439 (956)
T PRK04914 368 ALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTR--------AAVKGFPKRELHPIPLPL 439 (956)
T ss_pred HHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccH--------HhhcCCCcCceeEeecCC
Confidence 0011111100 0000000 00000000000000 000011111110000000
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccc
Q 000174 586 IQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFV 665 (1931)
Q Consensus 586 ~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~ 665 (1931)
.. .|...... ........ ..|-..+....
T Consensus 440 ~~-------------~y~~~~~~-~~~~~~~~-------------~l~pe~~~~~~------------------------ 468 (956)
T PRK04914 440 PE-------------QYQTAIKV-SLEARARD-------------MLYPEQIYQEF------------------------ 468 (956)
T ss_pred CH-------------HHHHHHHH-hHHHHHHh-------------hcCHHHHHHHH------------------------
Confidence 00 01000000 00000000 00000000000
Q ss_pred cCCccccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCC
Q 000174 666 EGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELP 745 (1931)
Q Consensus 666 ~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~ 745 (1931)
.........++|+..|+++|+.. ...|+||||+++.++..|.+.|+..
T Consensus 469 ----------------------------~~~~~~~~~d~Ki~~L~~~L~~~---~~~KvLVF~~~~~t~~~L~~~L~~~- 516 (956)
T PRK04914 469 ----------------------------EDNATWWNFDPRVEWLIDFLKSH---RSEKVLVICAKAATALQLEQALRER- 516 (956)
T ss_pred ----------------------------hhhhhccccCHHHHHHHHHHHhc---CCCeEEEEeCcHHHHHHHHHHHhhc-
Confidence 00001124568999999999764 3679999999999999999999642
Q ss_pred CCCCceeEEEEccCCCccccHHHHHHHHHHhhcC--CceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCC
Q 000174 746 SLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDG--RVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARK 823 (1931)
Q Consensus 746 ~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G--~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R 823 (1931)
.|+++..+|| +|++.+|+++++.|+++ .++|||||++++||+|++.|++||+||+||||..|+||+||++|
T Consensus 517 --~Gi~~~~ihG-----~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~R 589 (956)
T PRK04914 517 --EGIRAAVFHE-----GMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDR 589 (956)
T ss_pred --cCeeEEEEEC-----CCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhccccc
Confidence 5899999999 99999999999999974 69999999999999999999999999999999999999999999
Q ss_pred CCCcEE
Q 000174 824 PGSDYI 829 (1931)
Q Consensus 824 ~Gs~~i 829 (1931)
.|++..
T Consensus 590 iGQ~~~ 595 (956)
T PRK04914 590 IGQKHD 595 (956)
T ss_pred CCCCce
Confidence 999833
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=363.59 Aligned_cols=317 Identities=15% Similarity=0.204 Sum_probs=224.6
Q ss_pred CCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCC
Q 000174 299 MPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY 377 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l 377 (1931)
.|+..+||+|.++++.++. +|+++.+|||+|||++|++|+... ...+|||+|+++|+.||.+.++. .++
T Consensus 21 fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---------~g~tlVisPl~sL~~dqv~~l~~-~gi 90 (607)
T PRK11057 21 FGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---------DGLTLVVSPLISLMKDQVDQLLA-NGV 90 (607)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---------CCCEEEEecHHHHHHHHHHHHHH-cCC
Confidence 6899999999999999998 999999999999999999997631 34699999999999999999986 478
Q ss_pred cEEEEeCCCcccccchHHHHhhc-CCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCC-CcHHHHHHHHHhhc
Q 000174 378 VVGHYCGEMGQDFWDAQRWQREF-DTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKK-HPYSLVMSEFYHTT 455 (1931)
Q Consensus 378 ~v~~~~G~~~~~~~~~~~w~~~~-~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~-~~~~~im~~~~~~~ 455 (1931)
.+..+.+....... ...+.... ...+++++||++|........+...++++|||||||++... +.|+..+..+-...
T Consensus 91 ~~~~~~s~~~~~~~-~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~ 169 (607)
T PRK11057 91 AAACLNSTQTREQQ-LEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLR 169 (607)
T ss_pred cEEEEcCCCCHHHH-HHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHH
Confidence 88877776543321 12222222 35789999999987432222244567999999999999853 44555444332221
Q ss_pred CCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhhhHHHHHHHH
Q 000174 456 SKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQ 535 (1931)
Q Consensus 456 ~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~ 535 (1931)
......++++||||+... ....+ ...+. ...|......+.....
T Consensus 170 ~~~p~~~~v~lTAT~~~~--------~~~di---~~~l~---------------l~~~~~~~~~~~r~nl---------- 213 (607)
T PRK11057 170 QRFPTLPFMALTATADDT--------TRQDI---VRLLG---------------LNDPLIQISSFDRPNI---------- 213 (607)
T ss_pred HhCCCCcEEEEecCCChh--------HHHHH---HHHhC---------------CCCeEEEECCCCCCcc----------
Confidence 112236689999997631 00011 11110 0001000000000000
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 000174 536 MEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTAL 615 (1931)
Q Consensus 536 l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l 615 (1931)
.+.+
T Consensus 214 ----------------------------------~~~v------------------------------------------ 217 (607)
T PRK11057 214 ----------------------------------RYTL------------------------------------------ 217 (607)
T ss_pred ----------------------------------eeee------------------------------------------
Confidence 0000
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhhhhh
Q 000174 616 QNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGA 695 (1931)
Q Consensus 616 ~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~ 695 (1931)
T Consensus 218 -------------------------------------------------------------------------------- 217 (607)
T PRK11057 218 -------------------------------------------------------------------------------- 217 (607)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHH
Q 000174 696 AVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAK 775 (1931)
Q Consensus 696 ~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~ 775 (1931)
.....+...|+..+.. ..+.++||||+++..++.+++.|.. .++++..+|| +|++.+|.+++++
T Consensus 218 ----~~~~~~~~~l~~~l~~---~~~~~~IIFc~tr~~~e~la~~L~~----~g~~v~~~Ha-----~l~~~~R~~i~~~ 281 (607)
T PRK11057 218 ----VEKFKPLDQLMRYVQE---QRGKSGIIYCNSRAKVEDTAARLQS----RGISAAAYHA-----GLDNDVRADVQEA 281 (607)
T ss_pred ----eeccchHHHHHHHHHh---cCCCCEEEEECcHHHHHHHHHHHHh----CCCCEEEecC-----CCCHHHHHHHHHH
Confidence 0000122233333332 2457899999999999999999998 6889999999 9999999999999
Q ss_pred hhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--EEEEEec
Q 000174 776 FRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--YILMIER 834 (1931)
Q Consensus 776 Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivlv~~ 834 (1931)
|+.|+++|||||+++++|||+|+|++||+||+|.++.+|+||+|||||.|.. +++++..
T Consensus 282 F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~ 342 (607)
T PRK11057 282 FQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDP 342 (607)
T ss_pred HHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCH
Confidence 9999999999999999999999999999999999999999999999999865 5555543
|
|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=341.47 Aligned_cols=441 Identities=18% Similarity=0.170 Sum_probs=268.9
Q ss_pred CCCCCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH
Q 000174 299 MPEEQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE 373 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~ 373 (1931)
..+..|.+||+++++|+.+ ...|+.++||+|||++.+..+..+...- .--+++|||||. .++.||.+++..
T Consensus 201 ~I~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~---k~~~paLIVCP~-Tii~qW~~E~~~ 276 (923)
T KOG0387|consen 201 FIWSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSG---KLTKPALIVCPA-TIIHQWMKEFQT 276 (923)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcc---cccCceEEEccH-HHHHHHHHHHHH
Confidence 3456899999999999976 5689999999999987776555444321 112679999995 788999999999
Q ss_pred Hc-CCcEEEEeCCCccc----ccchHHHHh-----hcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCc
Q 000174 374 QT-GYVVGHYCGEMGQD----FWDAQRWQR-----EFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHP 443 (1931)
Q Consensus 374 ~~-~l~v~~~~G~~~~~----~~~~~~w~~-----~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~ 443 (1931)
|. .++|.++||..... ......|.. ......|+|+|+..+. +....+.-..|+++|+||+|+++++++
T Consensus 277 w~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r--~~~d~l~~~~W~y~ILDEGH~IrNpns 354 (923)
T KOG0387|consen 277 WWPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFR--IQGDDLLGILWDYVILDEGHRIRNPNS 354 (923)
T ss_pred hCcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhc--ccCcccccccccEEEecCcccccCCcc
Confidence 86 68999999875421 111222333 2347889999999887 333445667899999999999998753
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEe--cchHHHhhhCCCCceeEEEec
Q 000174 444 YSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTI--KDRKELEKHVPMPSEVVVEYD 521 (1931)
Q Consensus 444 ~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~--~~~~~l~~~~~~p~e~~~~y~ 521 (1931)
.+...+.+...+++|+||+||++ ++|..|+.++| .+++- .....+......|...--.-.
T Consensus 355 ------~islackki~T~~RiILSGTPiQ-----------NnL~ELwsLfD-Fv~PG~Lgt~~~F~~~f~~pI~~GgyaN 416 (923)
T KOG0387|consen 355 ------KISLACKKIRTVHRIILSGTPIQ-----------NNLTELWSLFD-FVFPGKLGTLPVFQQNFEHPINRGGYAN 416 (923)
T ss_pred ------HHHHHHHhccccceEEeeCcccc-----------chHHHHHHHhh-hccCCcccchHHHHhhhhhheeccccCC
Confidence 34444444556889999999996 36778887776 22211 111222222222211111001
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhH-HHHHHHHHHHHHHHHHh
Q 000174 522 KAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAA-NLIQKLRAINYALGELG 600 (1931)
Q Consensus 522 ~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~-~l~~~~~~~~~~l~~lg 600 (1931)
.++ .+....+.++......+.++.+ +|.+.++.. .|+.+-..+.+|-..-.
T Consensus 417 As~---------~qv~~aykca~~Lr~lI~PylL-------------------RR~K~dv~~~~Lp~K~E~VlfC~LT~~ 468 (923)
T KOG0387|consen 417 ASP---------RQVQTAYKCAVALRDLISPYLL-------------------RRMKSDVKGLKLPKKEEIVLFCRLTKL 468 (923)
T ss_pred CCH---------HHHHHHHHHHHHHHHHhHHHHH-------------------HHHHHHhhhccCCCccceEEEEeccHH
Confidence 111 1111122222211111111111 111111111 12222222222211111
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccccccc
Q 000174 601 QWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDS 680 (1931)
Q Consensus 601 ~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~ 680 (1931)
| .+..+.|+..-+-....++..........++++|+ |+++..+.-.+.
T Consensus 469 Q---R~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICn-----------------------------HPdll~~~~~~~ 516 (923)
T KOG0387|consen 469 Q---RRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICN-----------------------------HPDLLDRRDEDE 516 (923)
T ss_pred H---HHHHHHHhhhHHHHHHHcCCccceechHHHHhhcC-----------------------------CcccccCccccc
Confidence 1 11111122211111111111111222334444444 222222110000
Q ss_pred ccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCC
Q 000174 681 HVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNN 760 (1931)
Q Consensus 681 ~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~ 760 (1931)
-.+ .+ .......+.|++.|.++|..+ ...+.|+|+|.+++.+.++|..+|... .++.+..|.|
T Consensus 517 ---~~~--~D-----~~g~~k~sGKm~vl~~ll~~W-~kqg~rvllFsqs~~mLdilE~fL~~~---~~ysylRmDG--- 579 (923)
T KOG0387|consen 517 ---KQG--PD-----YEGDPKRSGKMKVLAKLLKDW-KKQGDRVLLFSQSRQMLDILESFLRRA---KGYSYLRMDG--- 579 (923)
T ss_pred ---ccC--CC-----cCCChhhcchHHHHHHHHHHH-hhCCCEEEEehhHHHHHHHHHHHHHhc---CCceEEEecC---
Confidence 000 00 002335688999999999998 456779999999999999999999853 7899999999
Q ss_pred CccccHHHHHHHHHHhhcCCce--EEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc-----EEEEEe
Q 000174 761 SQEMRTFQMQETIAKFRDGRVT--LLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD-----YILMIE 833 (1931)
Q Consensus 761 ~~~~~~~~R~~~l~~Fr~G~~~--vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~-----~ivlv~ 833 (1931)
..+...|+.++++|++++.- +|++|.|++-|+|+..+|.||.|||.|||....|++-||+|.||+ |.+| .
T Consensus 580 --tT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~-t 656 (923)
T KOG0387|consen 580 --TTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLM-T 656 (923)
T ss_pred --CCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEe-c
Confidence 88999999999999977654 889999999999999999999999999999999999999999998 4444 3
Q ss_pred cCChhHHHHH
Q 000174 834 RGNLSHATFL 843 (1931)
Q Consensus 834 ~~~~~~~~~l 843 (1931)
.+..++..+.
T Consensus 657 ~gTIEEkiY~ 666 (923)
T KOG0387|consen 657 AGTIEEKIYH 666 (923)
T ss_pred CCcHHHHHHH
Confidence 4444443333
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=347.08 Aligned_cols=319 Identities=18% Similarity=0.213 Sum_probs=223.4
Q ss_pred CCCCcHHHHHHHHHHhc----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcC
Q 000174 301 EEQARPYQLDVLEQAKK----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG 376 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~ 376 (1931)
-..|||||.+++..+.. ++.||++|||+|||++++..+..+ +.++|||||+.+|+.||.++|.+++.
T Consensus 253 ~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l---------~k~tLILvps~~Lv~QW~~ef~~~~~ 323 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV---------KKSCLVLCTSAVSVEQWKQQFKMWST 323 (732)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh---------CCCEEEEeCcHHHHHHHHHHHHHhcC
Confidence 36899999999999885 368999999999999999876543 34599999999999999999999874
Q ss_pred ---CcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhc--------ccccccceeEEEEeCCCcccCCCcHH
Q 000174 377 ---YVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH--------SIIKMEAINLLILDECHHAVKKHPYS 445 (1931)
Q Consensus 377 ---l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~--------~~l~l~~i~lLV~DEaH~~~~~~~~~ 445 (1931)
..+..++|+... .+ .....|+|+|++++.....+ ..+.-..|++||+|||||+... .|+
T Consensus 324 l~~~~I~~~tg~~k~------~~---~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~-~fr 393 (732)
T TIGR00603 324 IDDSQICRFTSDAKE------RF---HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA-MFR 393 (732)
T ss_pred CCCceEEEEecCccc------cc---ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH-HHH
Confidence 456667765322 11 13478999999998643221 1233467999999999999763 566
Q ss_pred HHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHh-hhCCCCceeEEEeccch
Q 000174 446 LVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELE-KHVPMPSEVVVEYDKAA 524 (1931)
Q Consensus 446 ~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~-~~~~~p~e~~~~y~~~~ 524 (1931)
.++..+. .+.+|||||||.+.++. +..|..++...++.....+.+. .++..+....+.+....
T Consensus 394 ~il~~l~-------a~~RLGLTATP~ReD~~---------~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~ 457 (732)
T TIGR00603 394 RVLTIVQ-------AHCKLGLTATLVREDDK---------ITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTP 457 (732)
T ss_pred HHHHhcC-------cCcEEEEeecCcccCCc---------hhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCH
Confidence 5554331 25689999999976542 2345666777777664433332 34443332222221110
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHH
Q 000174 525 SLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCA 604 (1931)
Q Consensus 525 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a 604 (1931)
. . ...
T Consensus 458 ~---~----------~~~-------------------------------------------------------------- 462 (732)
T TIGR00603 458 E---F----------YRE-------------------------------------------------------------- 462 (732)
T ss_pred H---H----------HHH--------------------------------------------------------------
Confidence 0 0 000
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccccccccccc
Q 000174 605 YKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVS 684 (1931)
Q Consensus 605 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s 684 (1931)
++.. ... ..++ +
T Consensus 463 ------yl~~---~~~----------~k~~------l------------------------------------------- 474 (732)
T TIGR00603 463 ------YLRE---NSR----------KRML------L------------------------------------------- 474 (732)
T ss_pred ------HHHh---cch----------hhhH------H-------------------------------------------
Confidence 0000 000 0000 0
Q ss_pred CCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccc
Q 000174 685 GGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEM 764 (1931)
Q Consensus 685 ~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~ 764 (1931)
......|+..+..++..+ ...+.++||||.+...+..+++.|. +..|+| .+
T Consensus 475 --------------~~~np~K~~~~~~Li~~h-e~~g~kiLVF~~~~~~l~~~a~~L~---------~~~I~G-----~t 525 (732)
T TIGR00603 475 --------------YVMNPNKFRACQFLIRFH-EQRGDKIIVFSDNVFALKEYAIKLG---------KPFIYG-----PT 525 (732)
T ss_pred --------------hhhChHHHHHHHHHHHHH-hhcCCeEEEEeCCHHHHHHHHHHcC---------CceEEC-----CC
Confidence 000124666666666554 2467899999999998888887763 346899 99
Q ss_pred cHHHHHHHHHHhhcC-CceEEEEecccccCCCCCCCCEEEEcCCCC-CHHHHHHhhccCCCCCC
Q 000174 765 RTFQMQETIAKFRDG-RVTLLVATSVAEEGLDIRQCNVVIRFDLAK-TVLAYIQSRGRARKPGS 826 (1931)
Q Consensus 765 ~~~~R~~~l~~Fr~G-~~~vLVaTdVaeeGlDip~~~lVI~fD~p~-s~~~yiQr~GRa~R~Gs 826 (1931)
++.+|++++++|++| .+++||+|+|+.+|||+|+|++||+++.|. |...|+||+||+.|.+.
T Consensus 526 s~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~ 589 (732)
T TIGR00603 526 SQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKK 589 (732)
T ss_pred CHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCC
Confidence 999999999999965 889999999999999999999999999985 99999999999999763
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=370.44 Aligned_cols=342 Identities=18% Similarity=0.177 Sum_probs=227.1
Q ss_pred hhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhc---CCCcEEEEEeCChhHHHHHHHHH
Q 000174 296 KEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQ---NKKMLAVFLVPKVPLVYQQAEVI 371 (1931)
Q Consensus 296 l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~---~~~~~vL~LvPT~~Lv~Q~~~~l 371 (1931)
.-+.++..|||+|.++++.+++ +|+|+++|||||||++|++|+.+.+...... ..+.++|+|+||++|+.|+++.+
T Consensus 25 ~~~~~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L 104 (876)
T PRK13767 25 WFKEKFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNL 104 (876)
T ss_pred HHHHccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHH
Confidence 3334678899999999999988 9999999999999999999988766543211 23567999999999999998865
Q ss_pred HH-------Hc--------CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccc--cccceeEEEEeC
Q 000174 372 RE-------QT--------GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSII--KMEAINLLILDE 434 (1931)
Q Consensus 372 ~~-------~~--------~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l--~l~~i~lLV~DE 434 (1931)
.. +. ++++.+.+|+..... ........++|+|+||++|..++....+ .+.++++|||||
T Consensus 105 ~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~----r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE 180 (876)
T PRK13767 105 EEPLTEIREIAKERGEELPEIRVAIRTGDTSSYE----KQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDE 180 (876)
T ss_pred HHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHH----HHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEec
Confidence 52 21 567888999875432 1122235789999999999887765433 478999999999
Q ss_pred CCcccCCCc---HHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCC
Q 000174 435 CHHAVKKHP---YSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVP 511 (1931)
Q Consensus 435 aH~~~~~~~---~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~ 511 (1931)
||++.+... +...+..+.... ...++++|||||+.+. ..+...+...... ...
T Consensus 181 ~H~l~~~~RG~~l~~~L~rL~~l~--~~~~q~IglSATl~~~-------------~~va~~L~~~~~~---------~~~ 236 (876)
T PRK13767 181 IHSLAENKRGVHLSLSLERLEELA--GGEFVRIGLSATIEPL-------------EEVAKFLVGYEDD---------GEP 236 (876)
T ss_pred hhhhccCccHHHHHHHHHHHHHhc--CCCCeEEEEecccCCH-------------HHHHHHhcCcccc---------CCC
Confidence 999986321 222333333332 1348899999997631 1111112110000 001
Q ss_pred CCceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHH
Q 000174 512 MPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRA 591 (1931)
Q Consensus 512 ~p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~ 591 (1931)
.+... +...... . + .+ ... . . ...+
T Consensus 237 r~~~i-v~~~~~k---~-------~-----------------~i----------------~v~-~-p---~~~l------ 261 (876)
T PRK13767 237 RDCEI-VDARFVK---P-------F-----------------DI----------------KVI-S-P---VDDL------ 261 (876)
T ss_pred CceEE-EccCCCc---c-------c-----------------eE----------------EEe-c-c---Cccc------
Confidence 11111 0000000 0 0 00 000 0 0 0000
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccc
Q 000174 592 INYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNE 671 (1931)
Q Consensus 592 ~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 671 (1931)
T Consensus 262 -------------------------------------------------------------------------------- 261 (876)
T PRK13767 262 -------------------------------------------------------------------------------- 261 (876)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccCCCchhhhhhhcccCCCC-CHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCC--CC
Q 000174 672 IEEGELLDSHVVSGGEHVDVIIGAAVADGKV-TPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPS--LS 748 (1931)
Q Consensus 672 l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~-s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~--l~ 748 (1931)
... ..... ......|.+++. .+.++||||+++..|+.++..|..... ..
T Consensus 262 -~~~----------------------~~~~~~~~l~~~L~~~i~-----~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~ 313 (876)
T PRK13767 262 -IHT----------------------PAEEISEALYETLHELIK-----EHRTTLIFTNTRSGAERVLYNLRKRFPEEYD 313 (876)
T ss_pred -ccc----------------------ccchhHHHHHHHHHHHHh-----cCCCEEEEeCCHHHHHHHHHHHHHhchhhcc
Confidence 000 00000 001122223332 246799999999999999999986311 12
Q ss_pred CceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCC---
Q 000174 749 FVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPG--- 825 (1931)
Q Consensus 749 ~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~G--- 825 (1931)
+..+..+|| ++++.+|..++++|++|+++|||||+++++|||+|++++||+||.|.++.+|+||+|||||.+
T Consensus 314 ~~~i~~hHg-----~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~ 388 (876)
T PRK13767 314 EDNIGAHHS-----SLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEV 388 (876)
T ss_pred ccceeeeeC-----CCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCC
Confidence 367889999 999999999999999999999999999999999999999999999999999999999999863
Q ss_pred CcEEEEEe
Q 000174 826 SDYILMIE 833 (1931)
Q Consensus 826 s~~ivlv~ 833 (1931)
+++++++.
T Consensus 389 ~~g~ii~~ 396 (876)
T PRK13767 389 SKGRIIVV 396 (876)
T ss_pred CcEEEEEc
Confidence 34555553
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=357.32 Aligned_cols=316 Identities=18% Similarity=0.232 Sum_probs=228.6
Q ss_pred CCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCC
Q 000174 299 MPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY 377 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l 377 (1931)
.|+.++||+|.++++.++. +|+++++|||+|||++|++|+.. ....++||+|+++|+.||.+.++. .++
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~---------~~g~~lVisPl~sL~~dq~~~l~~-~gi 78 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL---------LKGLTVVISPLISLMKDQVDQLRA-AGV 78 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH---------cCCcEEEEcCCHHHHHHHHHHHHH-cCC
Confidence 7899999999999999998 99999999999999999998752 134689999999999999999987 588
Q ss_pred cEEEEeCCCcccccchHHHHhh-cCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCC-CcHHHHHHHHHhhc
Q 000174 378 VVGHYCGEMGQDFWDAQRWQRE-FDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKK-HPYSLVMSEFYHTT 455 (1931)
Q Consensus 378 ~v~~~~G~~~~~~~~~~~w~~~-~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~-~~~~~im~~~~~~~ 455 (1931)
.+..++|+...+.. ...+... ....+|+++||++|....-...+...++++|||||||++... +.|+..+..+....
T Consensus 79 ~~~~~~s~~~~~~~-~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~ 157 (591)
T TIGR01389 79 AAAYLNSTLSAKEQ-QDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLA 157 (591)
T ss_pred cEEEEeCCCCHHHH-HHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHH
Confidence 88888888764432 2223333 247899999999997544334456778999999999999752 45555544433222
Q ss_pred CCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhhhHHHHHHHH
Q 000174 456 SKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQ 535 (1931)
Q Consensus 456 ~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~ 535 (1931)
.......+++||||+.. ... ..+...+. ...+......+...
T Consensus 158 ~~~~~~~vi~lTAT~~~--------~~~---~~i~~~l~---------------~~~~~~~~~~~~r~------------ 199 (591)
T TIGR01389 158 ERFPQVPRIALTATADA--------ETR---QDIRELLR---------------LADANEFITSFDRP------------ 199 (591)
T ss_pred HhCCCCCEEEEEeCCCH--------HHH---HHHHHHcC---------------CCCCCeEecCCCCC------------
Confidence 11122339999999753 000 11111111 00000000000000
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 000174 536 MEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTAL 615 (1931)
Q Consensus 536 l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l 615 (1931)
T Consensus 200 -------------------------------------------------------------------------------- 199 (591)
T TIGR01389 200 -------------------------------------------------------------------------------- 199 (591)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhhhhh
Q 000174 616 QNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGA 695 (1931)
Q Consensus 616 ~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~ 695 (1931)
.+.-
T Consensus 200 -------------------------------------------------------nl~~--------------------- 203 (591)
T TIGR01389 200 -------------------------------------------------------NLRF--------------------- 203 (591)
T ss_pred -------------------------------------------------------CcEE---------------------
Confidence 0000
Q ss_pred cccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHH
Q 000174 696 AVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAK 775 (1931)
Q Consensus 696 ~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~ 775 (1931)
.+ .....+...+.+.|... .+.++||||+++..++.+++.|.. .++++..+|| +|+..+|..++++
T Consensus 204 ~v--~~~~~~~~~l~~~l~~~---~~~~~IIf~~sr~~~e~la~~L~~----~g~~~~~~H~-----~l~~~~R~~i~~~ 269 (591)
T TIGR01389 204 SV--VKKNNKQKFLLDYLKKH---RGQSGIIYASSRKKVEELAERLES----QGISALAYHA-----GLSNKVRAENQED 269 (591)
T ss_pred EE--EeCCCHHHHHHHHHHhc---CCCCEEEEECcHHHHHHHHHHHHh----CCCCEEEEEC-----CCCHHHHHHHHHH
Confidence 00 00012334455555443 256899999999999999999987 6889999999 9999999999999
Q ss_pred hhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--EEEEEe
Q 000174 776 FRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--YILMIE 833 (1931)
Q Consensus 776 Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivlv~ 833 (1931)
|++|+++|||||+++++|||+|++++||+||+|.|+.+|+|++|||||.|.. ++++..
T Consensus 270 F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~ 329 (591)
T TIGR01389 270 FLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYS 329 (591)
T ss_pred HHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecC
Confidence 9999999999999999999999999999999999999999999999999865 444443
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-32 Score=361.19 Aligned_cols=329 Identities=23% Similarity=0.247 Sum_probs=232.7
Q ss_pred cchhhhhcCCCCCCcHHHHHHHHH-Hhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHH
Q 000174 291 KKSEAKEKMPEEQARPYQLDVLEQ-AKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQA 368 (1931)
Q Consensus 291 ~~~~~l~~~~~~~~~~~Q~eai~~-~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~ 368 (1931)
...+.+.+.|+.+|+|+|.++++. ++. +|+|+++|||||||++|.+++.+.+. .+.++|||+|+++||.|+.
T Consensus 11 ~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~------~~~kal~i~P~raLa~q~~ 84 (737)
T PRK02362 11 GVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA------RGGKALYIVPLRALASEKF 84 (737)
T ss_pred HHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh------cCCcEEEEeChHHHHHHHH
Confidence 344778889999999999999998 444 89999999999999999999887764 2467999999999999999
Q ss_pred HHHHHH--cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHH
Q 000174 369 EVIREQ--TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSL 446 (1931)
Q Consensus 369 ~~l~~~--~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~ 446 (1931)
+.++.+ +++++..++|+...+. . .+..++|+|+||+++..++.++...+.++++||+||+|.+.+. .+..
T Consensus 85 ~~~~~~~~~g~~v~~~tGd~~~~~----~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~-~rg~ 156 (737)
T PRK02362 85 EEFERFEELGVRVGISTGDYDSRD----E---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSA-NRGP 156 (737)
T ss_pred HHHHHhhcCCCEEEEEeCCcCccc----c---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCC-cchH
Confidence 999975 3889999999865421 1 2356899999999999888876667889999999999999763 4444
Q ss_pred HHHHHHhhcC-CCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchh
Q 000174 447 VMSEFYHTTS-KEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAAS 525 (1931)
Q Consensus 447 im~~~~~~~~-~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~ 525 (1931)
.+..++.... ....+|+++||||+.+. ..+...++...+.. .+.+.|....+.+.....
T Consensus 157 ~le~il~rl~~~~~~~qii~lSATl~n~-------------~~la~wl~~~~~~~-------~~rpv~l~~~v~~~~~~~ 216 (737)
T PRK02362 157 TLEVTLAKLRRLNPDLQVVALSATIGNA-------------DELADWLDAELVDS-------EWRPIDLREGVFYGGAIH 216 (737)
T ss_pred HHHHHHHHHHhcCCCCcEEEEcccCCCH-------------HHHHHHhCCCcccC-------CCCCCCCeeeEecCCeec
Confidence 4433333221 12348999999998641 23333444322111 011111111111100000
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHH
Q 000174 526 LWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAY 605 (1931)
Q Consensus 526 ~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~ 605 (1931)
+ ..+
T Consensus 217 -----------------------------~------------------~~~----------------------------- 220 (737)
T PRK02362 217 -----------------------------F------------------DDS----------------------------- 220 (737)
T ss_pred -----------------------------c------------------ccc-----------------------------
Confidence 0 000
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccC
Q 000174 606 KVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSG 685 (1931)
Q Consensus 606 ~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~ 685 (1931)
...
T Consensus 221 --------------------------------------------------------------------~~~--------- 223 (737)
T PRK02362 221 --------------------------------------------------------------------QRE--------- 223 (737)
T ss_pred --------------------------------------------------------------------ccc---------
Confidence 000
Q ss_pred CCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCC--C----------------
Q 000174 686 GEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPS--L---------------- 747 (1931)
Q Consensus 686 ~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~--l---------------- 747 (1931)
+.......++..+.+.+. .+.++||||+++..|..++..|..... +
T Consensus 224 -----------~~~~~~~~~~~~~~~~~~-----~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~ 287 (737)
T PRK02362 224 -----------VEVPSKDDTLNLVLDTLE-----EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIR 287 (737)
T ss_pred -----------CCCccchHHHHHHHHHHH-----cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH
Confidence 000000122333333332 357899999999999988887764210 0
Q ss_pred --------------CCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEE----cC---
Q 000174 748 --------------SFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIR----FD--- 806 (1931)
Q Consensus 748 --------------~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~----fD--- 806 (1931)
-...++++|| ++++.+|+.+++.|++|.++|||||+++++|||+|++++||+ ||
T Consensus 288 ~~~~~~~~~~L~~~l~~gva~hHa-----gl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~ 362 (737)
T PRK02362 288 EVSDTETSKDLADCVAKGAAFHHA-----GLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGA 362 (737)
T ss_pred hccCccccHHHHHHHHhCEEeecC-----CCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCC
Confidence 0135788899 999999999999999999999999999999999999999997 88
Q ss_pred --CCCCHHHHHHhhccCCCCCCc
Q 000174 807 --LAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 807 --~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
.|.+..+|+||+|||||.|..
T Consensus 363 g~~~~s~~~y~Qm~GRAGR~g~d 385 (737)
T PRK02362 363 GMQPIPVLEYHQMAGRAGRPGLD 385 (737)
T ss_pred CceeCCHHHHHHHhhcCCCCCCC
Confidence 688999999999999998854
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-31 Score=339.57 Aligned_cols=325 Identities=18% Similarity=0.219 Sum_probs=220.0
Q ss_pred CCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCC--
Q 000174 301 EEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY-- 377 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l-- 377 (1931)
...||+||.++++.++. +++|++++||+|||+++..++...+.. .+.++||||||++|+.||.++++++...
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~-----~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~ 186 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLEN-----YEGKVLIIVPTTSLVTQMIDDFVDYRLFPR 186 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhc-----CCCeEEEEECcHHHHHHHHHHHHHhccccc
Confidence 46899999999999988 789999999999999988766554442 2348999999999999999999987632
Q ss_pred -cEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcC
Q 000174 378 -VVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTS 456 (1931)
Q Consensus 378 -~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~ 456 (1931)
.+..+.|+... + ...+|+|+|||+|.+... ..+.++++||+|||||+... .+..++..+-
T Consensus 187 ~~~~~i~~g~~~-------~----~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~-~~~~il~~~~---- 247 (501)
T PHA02558 187 EAMHKIYSGTAK-------D----TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGK-SLTSIITKLD---- 247 (501)
T ss_pred cceeEEecCccc-------C----CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccch-hHHHHHHhhh----
Confidence 33344444321 1 357999999999986442 24678999999999999874 5666665432
Q ss_pred CCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHh-hhCCCCceeEEEeccchhhhHHHHHHHH
Q 000174 457 KEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELE-KHVPMPSEVVVEYDKAASLWSLHEQLKQ 535 (1931)
Q Consensus 457 ~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~-~~~~~p~e~~~~y~~~~~~~~l~~~i~~ 535 (1931)
..++++||||||...+. ....+...++...+.+...+.+. .++..+....+....... . ...
T Consensus 248 --~~~~~lGLTATp~~~~~---------~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~--~----~~~ 310 (501)
T PHA02558 248 --NCKFKFGLTGSLRDGKA---------NILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDE--D----RVK 310 (501)
T ss_pred --ccceEEEEeccCCCccc---------cHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHH--H----hhh
Confidence 13679999999965332 11223334454444432222221 111112111111000000 0 000
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 000174 536 MEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTAL 615 (1931)
Q Consensus 536 l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l 615 (1931)
+ .-+.|.. .+.
T Consensus 311 ~-------------------------------------------------------------~~~~~~~------~~~-- 321 (501)
T PHA02558 311 L-------------------------------------------------------------KGEDYQE------EIK-- 321 (501)
T ss_pred h-------------------------------------------------------------cccchHH------HHH--
Confidence 0 0000000 000
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhhhhh
Q 000174 616 QNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGA 695 (1931)
Q Consensus 616 ~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~ 695 (1931)
++ .
T Consensus 322 -----------------~l---~--------------------------------------------------------- 324 (501)
T PHA02558 322 -----------------YI---T--------------------------------------------------------- 324 (501)
T ss_pred -----------------HH---h---------------------------------------------------------
Confidence 00 0
Q ss_pred cccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHH
Q 000174 696 AVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAK 775 (1931)
Q Consensus 696 ~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~ 775 (1931)
....+...+.+++.... ..+.++|||+.++.+++.|++.|.. .++++..+|| ++++.+|..+++.
T Consensus 325 -----~~~~Rn~~I~~~~~~~~-~~~~~~lV~~~~~~h~~~L~~~L~~----~g~~v~~i~G-----~~~~~eR~~i~~~ 389 (501)
T PHA02558 325 -----SHTKRNKWIANLALKLA-KKGENTFVMFKYVEHGKPLYEMLKK----VYDKVYYVSG-----EVDTEDRNEMKKI 389 (501)
T ss_pred -----ccHHHHHHHHHHHHHHH-hcCCCEEEEEEEHHHHHHHHHHHHH----cCCCEEEEeC-----CCCHHHHHHHHHH
Confidence 00012222223332221 2456899999999999999999998 5789999999 9999999999999
Q ss_pred hhcCCceEEEEe-cccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 776 FRDGRVTLLVAT-SVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 776 Fr~G~~~vLVaT-dVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
|++|+..||||| ++++||+|+|++++||.++++.+...|+||+||++|.+..
T Consensus 390 ~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~ 442 (501)
T PHA02558 390 AEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGS 442 (501)
T ss_pred HhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCC
Confidence 999999999999 8999999999999999999999999999999999997643
|
|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-32 Score=321.50 Aligned_cols=328 Identities=20% Similarity=0.270 Sum_probs=242.6
Q ss_pred hhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhh--hcCCCcEEEEEeCChhHHHHHHH
Q 000174 293 SEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQ--RQNKKMLAVFLVPKVPLVYQQAE 369 (1931)
Q Consensus 293 ~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~--~~~~~~~vL~LvPT~~Lv~Q~~~ 369 (1931)
.+++...+|..|+|+|.++++.++. +++++|+|||||||++|.+||...+.... +...+-+++||+||++|+.|.+.
T Consensus 148 l~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~r 227 (593)
T KOG0344|consen 148 LENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYR 227 (593)
T ss_pred HHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHH
Confidence 3678889999999999999999999 99999999999999999999988877553 12445789999999999999999
Q ss_pred HHHHHc-----CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhccc--ccccceeEEEEeCCCcccCCC
Q 000174 370 VIREQT-----GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSI--IKMEAINLLILDECHHAVKKH 442 (1931)
Q Consensus 370 ~l~~~~-----~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~--l~l~~i~lLV~DEaH~~~~~~ 442 (1931)
++.++. ++++..+........ +.. ......++|+|.||-++..++..+. +.+..+.++|+||||++.+..
T Consensus 228 e~~k~~~~~~t~~~a~~~~~~~~~~q-k~a--~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~ 304 (593)
T KOG0344|consen 228 EMRKYSIDEGTSLRAAQFSKPAYPSQ-KPA--FLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPE 304 (593)
T ss_pred HHHhcCCCCCCchhhhhcccccchhh-ccc--hhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChh
Confidence 999865 344444443322111 100 0111367999999999999998875 688999999999999999965
Q ss_pred cHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEecc
Q 000174 443 PYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDK 522 (1931)
Q Consensus 443 ~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~ 522 (1931)
.|...+..+|..+.. ...++=++|||-.. .+.++.... ...+..+++....
T Consensus 305 ~f~~Qla~I~sac~s-~~i~~a~FSat~~~------------~VEE~~~~i----------------~~~~~~vivg~~~ 355 (593)
T KOG0344|consen 305 FFVEQLADIYSACQS-PDIRVALFSATISV------------YVEEWAELI----------------KSDLKRVIVGLRN 355 (593)
T ss_pred hHHHHHHHHHHHhcC-cchhhhhhhccccH------------HHHHHHHHh----------------hccceeEEEecch
Confidence 788888888887644 33455667777331 111111110 0011111110000
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHH
Q 000174 523 AASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQW 602 (1931)
Q Consensus 523 ~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~ 602 (1931)
.. ...
T Consensus 356 sa-----~~~---------------------------------------------------------------------- 360 (593)
T KOG0344|consen 356 SA-----NET---------------------------------------------------------------------- 360 (593)
T ss_pred hH-----hhh----------------------------------------------------------------------
Confidence 00 000
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccccccccc
Q 000174 603 CAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHV 682 (1931)
Q Consensus 603 ~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~ 682 (1931)
+-+
T Consensus 361 ----V~Q------------------------------------------------------------------------- 363 (593)
T KOG0344|consen 361 ----VDQ------------------------------------------------------------------------- 363 (593)
T ss_pred ----hhh-------------------------------------------------------------------------
Confidence 000
Q ss_pred ccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCc
Q 000174 683 VSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQ 762 (1931)
Q Consensus 683 ~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~ 762 (1931)
..+--+....|+..+.+++..- -...++||+++...|..|++.|.. +.++.+.++||
T Consensus 364 ------------elvF~gse~~K~lA~rq~v~~g---~~PP~lIfVQs~eRak~L~~~L~~---~~~i~v~vIh~----- 420 (593)
T KOG0344|consen 364 ------------ELVFCGSEKGKLLALRQLVASG---FKPPVLIFVQSKERAKQLFEELEI---YDNINVDVIHG----- 420 (593)
T ss_pred ------------hheeeecchhHHHHHHHHHhcc---CCCCeEEEEecHHHHHHHHHHhhh---ccCcceeeEec-----
Confidence 0000112235666666666542 345799999999999999999963 37899999999
Q ss_pred cccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 763 EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 763 ~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
..++.+|.+++++||.|++.+||||++++||||+.++|+|||||.|.+-.+|+||+||+||+|..
T Consensus 421 e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~ 485 (593)
T KOG0344|consen 421 ERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRS 485 (593)
T ss_pred ccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999877
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-31 Score=348.59 Aligned_cols=304 Identities=20% Similarity=0.267 Sum_probs=212.6
Q ss_pred hcCCCCCCcHHHHHHHHHHhc-------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHH
Q 000174 297 EKMPEEQARPYQLDVLEQAKK-------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAE 369 (1931)
Q Consensus 297 ~~~~~~~~~~~Q~eai~~~l~-------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~ 369 (1931)
..++ ++||++|.++++.+.. .|.|++++||||||++|++++...+. .+.+++||+||++|+.|+++
T Consensus 256 ~~l~-f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~------~g~q~lilaPT~~LA~Q~~~ 328 (681)
T PRK10917 256 ASLP-FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE------AGYQAALMAPTEILAEQHYE 328 (681)
T ss_pred HhCC-CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH------cCCeEEEEeccHHHHHHHHH
Confidence 3344 4799999999999977 27999999999999999999887664 35689999999999999999
Q ss_pred HHHHHc---CCcEEEEeCCCcccccchHHHHhhcC-CccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHH
Q 000174 370 VIREQT---GYVVGHYCGEMGQDFWDAQRWQREFD-TKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYS 445 (1931)
Q Consensus 370 ~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~-~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~ 445 (1931)
.+++++ ++++..++|+..... +...+..... .++|+|+||+.+.+ .+.+.++++||+||+|++... ..
T Consensus 329 ~l~~l~~~~~i~v~ll~G~~~~~~-r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~~--qr 400 (681)
T PRK10917 329 NLKKLLEPLGIRVALLTGSLKGKE-RREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGVE--QR 400 (681)
T ss_pred HHHHHHhhcCcEEEEEcCCCCHHH-HHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhHH--HH
Confidence 999876 689999999976433 2334444433 59999999998753 356789999999999998431 12
Q ss_pred HHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchh
Q 000174 446 LVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAAS 525 (1931)
Q Consensus 446 ~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~ 525 (1931)
..+. . ....|++|+|||||.. ....+...-+-.+..+.. + .....|....+.
T Consensus 401 ~~l~---~---~~~~~~iL~~SATp~p------------rtl~~~~~g~~~~s~i~~---~-p~~r~~i~~~~~------ 452 (681)
T PRK10917 401 LALR---E---KGENPHVLVMTATPIP------------RTLAMTAYGDLDVSVIDE---L-PPGRKPITTVVI------ 452 (681)
T ss_pred HHHH---h---cCCCCCEEEEeCCCCH------------HHHHHHHcCCCceEEEec---C-CCCCCCcEEEEe------
Confidence 2211 1 1224889999999973 000111100000000000 0 000000000000
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHH
Q 000174 526 LWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAY 605 (1931)
Q Consensus 526 ~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~ 605 (1931)
T Consensus 453 -------------------------------------------------------------------------------- 452 (681)
T PRK10917 453 -------------------------------------------------------------------------------- 452 (681)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccC
Q 000174 606 KVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSG 685 (1931)
Q Consensus 606 ~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~ 685 (1931)
T Consensus 453 -------------------------------------------------------------------------------- 452 (681)
T PRK10917 453 -------------------------------------------------------------------------------- 452 (681)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeeh--------hHHHHHHHHHhcCCCCCCceeEEEEc
Q 000174 686 GEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERV--------VAALVLPKVFAELPSLSFVKSASLIG 757 (1931)
Q Consensus 686 ~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r--------~ta~~L~~~L~~~~~l~~~~~~~l~G 757 (1931)
...+...+++.+.+. ...+.+++|||+.+ ..+..+++.|... +.++++..+||
T Consensus 453 ----------------~~~~~~~~~~~i~~~-~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~--~~~~~v~~lHG 513 (681)
T PRK10917 453 ----------------PDSRRDEVYERIREE-IAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEA--FPELRVGLLHG 513 (681)
T ss_pred ----------------CcccHHHHHHHHHHH-HHcCCcEEEEEcccccccchhHHHHHHHHHHHHHH--CCCCcEEEEeC
Confidence 000011112222211 12356899999853 3456677777653 23578999999
Q ss_pred cCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCC-CHHHHHHhhccCCCCCCc
Q 000174 758 HNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAK-TVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 758 ~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~-s~~~yiQr~GRa~R~Gs~ 827 (1931)
+|++.+|++++++|++|+++|||||+|+++|||+|++++||+||.|. ...+|.||+||+||.|..
T Consensus 514 -----~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~ 579 (681)
T PRK10917 514 -----RMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQ 579 (681)
T ss_pred -----CCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCc
Confidence 99999999999999999999999999999999999999999999997 688899999999999866
|
|
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=313.35 Aligned_cols=342 Identities=17% Similarity=0.230 Sum_probs=270.8
Q ss_pred CCCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe
Q 000174 280 GINQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV 358 (1931)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv 358 (1931)
...|.+.+.......++.+.+|..|+|+|+..+|.+++ ++++..+-||||||.+|++|+.+.+.... ..+.++++++
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s--~~g~Ralils 97 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS--QTGLRALILS 97 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc--ccccceeecc
Confidence 35667777777777999999999999999999999999 99999999999999999999998887653 4567899999
Q ss_pred CChhHHHHHHHHHHHH---cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCC
Q 000174 359 PKVPLVYQQAEVIREQ---TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDEC 435 (1931)
Q Consensus 359 PT~~Lv~Q~~~~l~~~---~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEa 435 (1931)
||++|+.|..++++.+ ++++..+++|+... .++|..+-.+++||++||+++......-.+.++.+.+||||||
T Consensus 98 ptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~----eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEa 173 (529)
T KOG0337|consen 98 PTRELALQTLKVVKDLGRGTKLRQSLLVGGDSI----EEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEA 173 (529)
T ss_pred CcHHHHHHHHHHHHHhccccchhhhhhcccchH----HHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhh
Confidence 9999999999988874 57888877777653 4678777789999999999999776666688999999999999
Q ss_pred CcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHh-hhCCCCc
Q 000174 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELE-KHVPMPS 514 (1931)
Q Consensus 436 H~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~-~~~~~p~ 514 (1931)
+++.+ ++|...+.+++...+.. .+.++||||..+ .| .+.. .-...|.
T Consensus 174 drlfe-mgfqeql~e~l~rl~~~--~QTllfSatlp~---------------~l--------------v~fakaGl~~p~ 221 (529)
T KOG0337|consen 174 DRLFE-MGFQEQLHEILSRLPES--RQTLLFSATLPR---------------DL--------------VDFAKAGLVPPV 221 (529)
T ss_pred hHHHh-hhhHHHHHHHHHhCCCc--ceEEEEeccCch---------------hh--------------HHHHHccCCCCc
Confidence 99998 69999999999988765 499999999653 00 0111 1112222
Q ss_pred eeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHH
Q 000174 515 EVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINY 594 (1931)
Q Consensus 515 e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~ 594 (1931)
.+.+..+. .+.
T Consensus 222 lVRldvet-----kis---------------------------------------------------------------- 232 (529)
T KOG0337|consen 222 LVRLDVET-----KIS---------------------------------------------------------------- 232 (529)
T ss_pred eEEeehhh-----hcc----------------------------------------------------------------
Confidence 22111000 000
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccc
Q 000174 595 ALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEE 674 (1931)
Q Consensus 595 ~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 674 (1931)
+.++.
T Consensus 233 --------------------------------------------e~lk~------------------------------- 237 (529)
T KOG0337|consen 233 --------------------------------------------ELLKV------------------------------- 237 (529)
T ss_pred --------------------------------------------hhhhh-------------------------------
Confidence 00000
Q ss_pred ccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEE
Q 000174 675 GELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSAS 754 (1931)
Q Consensus 675 ~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~ 754 (1931)
.........|...|+.++... ..+.++||||.++..++++..+|.. .++.+..
T Consensus 238 ---------------------~f~~~~~a~K~aaLl~il~~~--~~~~~t~vf~~tk~hve~~~~ll~~----~g~~~s~ 290 (529)
T KOG0337|consen 238 ---------------------RFFRVRKAEKEAALLSILGGR--IKDKQTIVFVATKHHVEYVRGLLRD----FGGEGSD 290 (529)
T ss_pred ---------------------heeeeccHHHHHHHHHHHhcc--ccccceeEEecccchHHHHHHHHHh----cCCCccc
Confidence 000012235777788888764 2356899999999999999999998 6788888
Q ss_pred EEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc---EEEE
Q 000174 755 LIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD---YILM 831 (1931)
Q Consensus 755 l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~---~ivl 831 (1931)
+.| .+.+.-|..-+.+|+.++.++||.||||+||+|||-.+.|||||.|....-|+||+||++|+|+. |-++
T Consensus 291 iys-----slD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V 365 (529)
T KOG0337|consen 291 IYS-----SLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLV 365 (529)
T ss_pred ccc-----ccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEE
Confidence 999 99999999999999999999999999999999999999999999999999999999999888765 5555
Q ss_pred EecC
Q 000174 832 IERG 835 (1931)
Q Consensus 832 v~~~ 835 (1931)
+.++
T Consensus 366 ~~~~ 369 (529)
T KOG0337|consen 366 ASTD 369 (529)
T ss_pred eccc
Confidence 5443
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-31 Score=350.03 Aligned_cols=297 Identities=20% Similarity=0.244 Sum_probs=212.7
Q ss_pred CCCCCCcHHHHHHHHHHhc-------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHH
Q 000174 299 MPEEQARPYQLDVLEQAKK-------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVI 371 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~-------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l 371 (1931)
.++ +||++|.++++.+++ .|.+++++||+|||.+|++++...+.. +.+++|||||++||.|+++.+
T Consensus 448 ~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~------g~qvlvLvPT~~LA~Q~~~~f 520 (926)
T TIGR00580 448 FPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD------GKQVAVLVPTTLLAQQHFETF 520 (926)
T ss_pred CCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh------CCeEEEEeCcHHHHHHHHHHH
Confidence 455 699999999999976 489999999999999999998776652 468999999999999999999
Q ss_pred HHHc---CCcEEEEeCCCcccccchHHHHhhcC-CccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHH
Q 000174 372 REQT---GYVVGHYCGEMGQDFWDAQRWQREFD-TKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLV 447 (1931)
Q Consensus 372 ~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~-~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~i 447 (1931)
++.+ ++++..++|...... ....+..... .++|||+||..+ ...+.+.++++||+||+|++.. .....
T Consensus 521 ~~~~~~~~i~v~~Lsg~~~~~e-~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrfgv--~~~~~ 592 (926)
T TIGR00580 521 KERFANFPVTIELLSRFRSAKE-QNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRFGV--KQKEK 592 (926)
T ss_pred HHHhccCCcEEEEEeccccHHH-HHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeecccccch--hHHHH
Confidence 9865 577888888765432 1223333333 589999999644 2446789999999999999743 22222
Q ss_pred HHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHH-HHHhcCCeEEEecchHHHhhhCCCCcee--EEEeccch
Q 000174 448 MSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICN-LESKLDSVVCTIKDRKELEKHVPMPSEV--VVEYDKAA 524 (1931)
Q Consensus 448 m~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~-Le~~l~~~i~t~~~~~~l~~~~~~p~e~--~~~y~~~~ 524 (1931)
+ ...+ ..+++|+|||||... .+.. +....+..+.. ..|... +..+-.
T Consensus 593 L----~~~~--~~~~vL~~SATpipr-----------tl~~~l~g~~d~s~I~-----------~~p~~R~~V~t~v~-- 642 (926)
T TIGR00580 593 L----KELR--TSVDVLTLSATPIPR-----------TLHMSMSGIRDLSIIA-----------TPPEDRLPVRTFVM-- 642 (926)
T ss_pred H----HhcC--CCCCEEEEecCCCHH-----------HHHHHHhcCCCcEEEe-----------cCCCCccceEEEEE--
Confidence 2 2222 247899999999730 0100 00001100000 000000 000000
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHH
Q 000174 525 SLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCA 604 (1931)
Q Consensus 525 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a 604 (1931)
.
T Consensus 643 ----------------------------------------------------------------------------~--- 643 (926)
T TIGR00580 643 ----------------------------------------------------------------------------E--- 643 (926)
T ss_pred ----------------------------------------------------------------------------e---
Confidence 0
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccccccccccc
Q 000174 605 YKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVS 684 (1931)
Q Consensus 605 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s 684 (1931)
T Consensus 644 -------------------------------------------------------------------------------- 643 (926)
T TIGR00580 644 -------------------------------------------------------------------------------- 643 (926)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCchhhhhhhcccCCCCCHH-HHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCcc
Q 000174 685 GGEHVDVIIGAAVADGKVTPK-VQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQE 763 (1931)
Q Consensus 685 ~~e~~~~~i~~~~~~~~~s~K-v~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~ 763 (1931)
..... ...+...+ ..+.+++|||+++.+++.+++.|+++ ++++++..+|| .
T Consensus 644 ----------------~~~~~i~~~i~~el-----~~g~qv~if~n~i~~~e~l~~~L~~~--~p~~~v~~lHG-----~ 695 (926)
T TIGR00580 644 ----------------YDPELVREAIRREL-----LRGGQVFYVHNRIESIEKLATQLREL--VPEARIAIAHG-----Q 695 (926)
T ss_pred ----------------cCHHHHHHHHHHHH-----HcCCeEEEEECCcHHHHHHHHHHHHh--CCCCeEEEecC-----C
Confidence 00000 00011111 12568999999999999999999874 24689999999 9
Q ss_pred ccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCC-CHHHHHHhhccCCCCCCc
Q 000174 764 MRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAK-TVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 764 ~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~-s~~~yiQr~GRa~R~Gs~ 827 (1931)
|++.+|++++++|++|+++|||||+++++|||+|++++||++|.|. ...+|+||+||+||.|..
T Consensus 696 m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~ 760 (926)
T TIGR00580 696 MTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKK 760 (926)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCC
Confidence 9999999999999999999999999999999999999999999975 788999999999999877
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-32 Score=308.13 Aligned_cols=337 Identities=18% Similarity=0.234 Sum_probs=262.1
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP 359 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP 359 (1931)
.+|++.+..+.....+-..||.+|+.+|+.|+..+.+ .|+++.+++|+|||.+|..++++.+.. .-....+++++|
T Consensus 26 dsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~---~~ke~qalilaP 102 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM---SVKETQALILAP 102 (397)
T ss_pred hhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc---chHHHHHHHhcc
Confidence 3566777776777889999999999999999999988 999999999999999999999887643 223456999999
Q ss_pred ChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCC
Q 000174 360 KVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECH 436 (1931)
Q Consensus 360 T~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH 436 (1931)
|++|+.|..++...+. +.++..+.|+..... ..-......++|+|+||++.++++..+.+....+.+.|+|||+
T Consensus 103 treLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~---~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaD 179 (397)
T KOG0327|consen 103 TRELAQQIQKVVRALGDHMDVSVHACIGGTNVRR---EDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEAD 179 (397)
T ss_pred hHHHHHHHHHHHHhhhcccceeeeeecCcccchh---hhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchH
Confidence 9999999998887754 567777777765431 1111223468999999999999999999999999999999999
Q ss_pred cccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCcee
Q 000174 437 HAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEV 516 (1931)
Q Consensus 437 ~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~ 516 (1931)
.++.. +|...+..+....+.. .|++++|||-.. .+..+. .++...|...
T Consensus 180 EmLs~-gfkdqI~~if~~lp~~--vQv~l~SAT~p~------------~vl~vt----------------~~f~~~pv~i 228 (397)
T KOG0327|consen 180 EMLSR-GFKDQIYDIFQELPSD--VQVVLLSATMPS------------DVLEVT----------------KKFMREPVRI 228 (397)
T ss_pred hhhcc-chHHHHHHHHHHcCcc--hhheeecccCcH------------HHHHHH----------------HHhccCceEE
Confidence 99984 8988888888877654 689999999432 111111 1233334333
Q ss_pred EEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHH
Q 000174 517 VVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYAL 596 (1931)
Q Consensus 517 ~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l 596 (1931)
.+..+... +
T Consensus 229 ~vkk~~lt-----------------------------------------------------------------------l 237 (397)
T KOG0327|consen 229 LVKKDELT-----------------------------------------------------------------------L 237 (397)
T ss_pred Eecchhhh-----------------------------------------------------------------------h
Confidence 22211100 0
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccc
Q 000174 597 GELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGE 676 (1931)
Q Consensus 597 ~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 676 (1931)
. .+.
T Consensus 238 ~---------gik------------------------------------------------------------------- 241 (397)
T KOG0327|consen 238 E---------GIK------------------------------------------------------------------- 241 (397)
T ss_pred h---------hee-------------------------------------------------------------------
Confidence 0 000
Q ss_pred ccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEE
Q 000174 677 LLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLI 756 (1931)
Q Consensus 677 l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~ 756 (1931)
+........+|+..|.++.. .-.+.+|||+++..+..|...|.. .++.+..+|
T Consensus 242 ------------------q~~i~v~k~~k~~~l~dl~~-----~~~q~~if~nt~r~v~~l~~~L~~----~~~~~s~~~ 294 (397)
T KOG0327|consen 242 ------------------QFYINVEKEEKLDTLCDLYR-----RVTQAVIFCNTRRKVDNLTDKLRA----HGFTVSAIH 294 (397)
T ss_pred ------------------eeeeeccccccccHHHHHHH-----hhhcceEEecchhhHHHHHHHHhh----CCceEEEee
Confidence 00000011126666666665 346799999999999999999977 678999999
Q ss_pred ccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEEEEe
Q 000174 757 GHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIE 833 (1931)
Q Consensus 757 G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ivlv~ 833 (1931)
| +|.+.+|..++.+|++|..+|||+|+.+++|||+..|.+|||||+|.+..+|+||+||+||.|.+++.+..
T Consensus 295 ~-----d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~ 366 (397)
T KOG0327|consen 295 G-----DMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINF 366 (397)
T ss_pred c-----ccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeee
Confidence 9 99999999999999999999999999999999999999999999999999999999999999999766643
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.4e-31 Score=344.71 Aligned_cols=310 Identities=20% Similarity=0.243 Sum_probs=214.2
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHhc-------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHH
Q 000174 294 EAKEKMPEEQARPYQLDVLEQAKK-------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQ 366 (1931)
Q Consensus 294 ~~l~~~~~~~~~~~Q~eai~~~l~-------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q 366 (1931)
+.++.++| +||++|+++++.++. .|.+++++||||||++|++++...+. .+.+++||+||++|+.|
T Consensus 227 ~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~------~g~qvlilaPT~~LA~Q 299 (630)
T TIGR00643 227 KFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE------AGYQVALMAPTEILAEQ 299 (630)
T ss_pred HHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH------cCCcEEEECCHHHHHHH
Confidence 44556776 899999999999876 25899999999999999999887665 24679999999999999
Q ss_pred HHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhc-CCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCC
Q 000174 367 QAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREF-DTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKH 442 (1931)
Q Consensus 367 ~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~-~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~ 442 (1931)
+++.+++++ ++++..++|+..... +...|.... ..++|+|+||+.+.+ .+.+.++++||+||+|++...
T Consensus 300 ~~~~~~~l~~~~gi~v~lltg~~~~~~-r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~- 372 (630)
T TIGR00643 300 HYNSLRNLLAPLGIEVALLTGSLKGKR-RKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVE- 372 (630)
T ss_pred HHHHHHHHhcccCcEEEEEecCCCHHH-HHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHH-
Confidence 999999876 689999999876543 233444433 368999999998863 356789999999999997431
Q ss_pred cHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEecc
Q 000174 443 PYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDK 522 (1931)
Q Consensus 443 ~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~ 522 (1931)
....+. ........|++|+|||||... . ..+...-+-.+.... .+ .....|....+.
T Consensus 373 -qr~~l~---~~~~~~~~~~~l~~SATp~pr-----------t-l~l~~~~~l~~~~i~---~~-p~~r~~i~~~~~--- 429 (630)
T TIGR00643 373 -QRKKLR---EKGQGGFTPHVLVMSATPIPR-----------T-LALTVYGDLDTSIID---EL-PPGRKPITTVLI--- 429 (630)
T ss_pred -HHHHHH---HhcccCCCCCEEEEeCCCCcH-----------H-HHHHhcCCcceeeec---cC-CCCCCceEEEEe---
Confidence 111121 111111258899999999740 0 001000000000000 00 000000000000
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHH
Q 000174 523 AASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQW 602 (1931)
Q Consensus 523 ~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~ 602 (1931)
T Consensus 430 -------------------------------------------------------------------------------- 429 (630)
T TIGR00643 430 -------------------------------------------------------------------------------- 429 (630)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccccccccc
Q 000174 603 CAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHV 682 (1931)
Q Consensus 603 ~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~ 682 (1931)
T Consensus 430 -------------------------------------------------------------------------------- 429 (630)
T TIGR00643 430 -------------------------------------------------------------------------------- 429 (630)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeeh--------hHHHHHHHHHhcCCCCCCceeEE
Q 000174 683 VSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERV--------VAALVLPKVFAELPSLSFVKSAS 754 (1931)
Q Consensus 683 ~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r--------~ta~~L~~~L~~~~~l~~~~~~~ 754 (1931)
. ..+...+++.+.+. -..+.+++|||+.. ..+..+++.|.+. +.++++..
T Consensus 430 ------------------~-~~~~~~~~~~i~~~-l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~--~~~~~v~~ 487 (630)
T TIGR00643 430 ------------------K-HDEKDIVYEFIEEE-IAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKA--FPKYNVGL 487 (630)
T ss_pred ------------------C-cchHHHHHHHHHHH-HHhCCcEEEEEccccccccchHHHHHHHHHHHHhh--CCCCcEEE
Confidence 0 00001111111111 01346788888764 4566777777653 25688999
Q ss_pred EEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCC-CHHHHHHhhccCCCCCCc
Q 000174 755 LIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAK-TVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 755 l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~-s~~~yiQr~GRa~R~Gs~ 827 (1931)
+|| +|++.+|.+++++|++|+.+|||||+++++|||+|++++||+||.|. +..+|.||+||+||.|..
T Consensus 488 lHG-----~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~ 556 (630)
T TIGR00643 488 LHG-----RMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQ 556 (630)
T ss_pred EeC-----CCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCC
Confidence 999 99999999999999999999999999999999999999999999996 788999999999999876
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-30 Score=338.55 Aligned_cols=407 Identities=18% Similarity=0.183 Sum_probs=238.1
Q ss_pred CCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcC
Q 000174 302 EQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG 376 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~ 376 (1931)
.+|++||.+++.+++. .++|++++||+|||++++.++.++... .+..+++|||||. .|+.||.++|+++++
T Consensus 168 ~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~---~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p 243 (1033)
T PLN03142 168 GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEY---RGITGPHMVVAPK-STLGNWMNEIRRFCP 243 (1033)
T ss_pred cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHh---cCCCCCEEEEeCh-HHHHHHHHHHHHHCC
Confidence 4899999999999864 689999999999999998887655432 2334579999996 677999999999874
Q ss_pred -CcEEEEeCCCcccccchHHHHhh--cCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcH-HHHHHHHH
Q 000174 377 -YVVGHYCGEMGQDFWDAQRWQRE--FDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPY-SLVMSEFY 452 (1931)
Q Consensus 377 -l~v~~~~G~~~~~~~~~~~w~~~--~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~-~~im~~~~ 452 (1931)
+++..++|.... +....... ....+|+|+|++.+..... .+.--.|++|||||||++.+..+. ...++.+
T Consensus 244 ~l~v~~~~G~~~e---R~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L- 317 (1033)
T PLN03142 244 VLRAVKFHGNPEE---RAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNENSLLSKTMRLF- 317 (1033)
T ss_pred CCceEEEeCCHHH---HHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCHHHHHHHHHHHh-
Confidence 678888886432 11111111 2467899999999986543 244457999999999999874321 2222222
Q ss_pred hhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhhhHHHHH
Q 000174 453 HTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQ 532 (1931)
Q Consensus 453 ~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~ 532 (1931)
...++|+|||||+..+ ...+..|-.++.+.++. ....+......+... ........|+..
T Consensus 318 ------~a~~RLLLTGTPlqNn--------l~ELwsLL~FL~P~~f~--s~~~F~~~f~~~~~~----~~~e~i~~L~~~ 377 (1033)
T PLN03142 318 ------STNYRLLITGTPLQNN--------LHELWALLNFLLPEIFS--SAETFDEWFQISGEN----DQQEVVQQLHKV 377 (1033)
T ss_pred ------hcCcEEEEecCCCCCC--------HHHHHHHHhcCCCCcCC--CHHHHHHHHcccccc----chHHHHHHHHHH
Confidence 2356899999999622 12344444444443332 222222222211100 000111122222
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhh-cccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000174 533 LKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVY-GVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSF 611 (1931)
Q Consensus 533 i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~ 611 (1931)
+..++.+ +.+..+.. .++... ......-....+.+ +..+ +. ..
T Consensus 378 L~pf~LR----------R~KsdV~~--------~LPpK~e~iv~v~LS~~Qk~l---Y~~l---l~------------k~ 421 (1033)
T PLN03142 378 LRPFLLR----------RLKSDVEK--------GLPPKKETILKVGMSQMQKQY---YKAL---LQ------------KD 421 (1033)
T ss_pred hhHHHhh----------hhHHHHhh--------hCCCceeEEEeeCCCHHHHHH---HHHH---HH------------HH
Confidence 2111110 00000000 000000 00000000000000 0000 00 00
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhh
Q 000174 612 LTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDV 691 (1931)
Q Consensus 612 l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~ 691 (1931)
...+...... ..+.. .-..++++|+. +.+..+..+...... + ..
T Consensus 422 ~~~l~~g~~~-~~Lln--ilmqLRk~cnH-----------------------------P~L~~~~ep~~~~~~-~---e~ 465 (1033)
T PLN03142 422 LDVVNAGGER-KRLLN--IAMQLRKCCNH-----------------------------PYLFQGAEPGPPYTT-G---EH 465 (1033)
T ss_pred HHHHhccccH-HHHHH--HHHHHHHHhCC-----------------------------HHhhhcccccCcccc-h---hH
Confidence 0000000000 00000 00011222110 000000000000000 0 00
Q ss_pred hhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHH
Q 000174 692 IIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQE 771 (1931)
Q Consensus 692 ~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~ 771 (1931)
....+.|+..|.++|... ...+.|+|||++...+++.|.++|.. .++.+..|+| +++..+|++
T Consensus 466 -------lie~SgKl~lLdkLL~~L-k~~g~KVLIFSQft~~LdiLed~L~~----~g~~y~rIdG-----sts~~eRq~ 528 (1033)
T PLN03142 466 -------LVENSGKMVLLDKLLPKL-KERDSRVLIFSQMTRLLDILEDYLMY----RGYQYCRIDG-----NTGGEDRDA 528 (1033)
T ss_pred -------HhhhhhHHHHHHHHHHHH-HhcCCeEEeehhHHHHHHHHHHHHHH----cCCcEEEECC-----CCCHHHHHH
Confidence 013478999999999876 35678999999999999999999987 6889999999 999999999
Q ss_pred HHHHhhcC---CceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 772 TIAKFRDG---RVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 772 ~l~~Fr~G---~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
++++|+.. ..-+|++|.+++.|||++.|++||+||++|||..++|++||++|.||+
T Consensus 529 ~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQk 587 (1033)
T PLN03142 529 SIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQK 587 (1033)
T ss_pred HHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCC
Confidence 99999853 345899999999999999999999999999999999999999999998
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-30 Score=347.01 Aligned_cols=305 Identities=19% Similarity=0.199 Sum_probs=212.1
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHhc-------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHH
Q 000174 294 EAKEKMPEEQARPYQLDVLEQAKK-------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQ 366 (1931)
Q Consensus 294 ~~l~~~~~~~~~~~Q~eai~~~l~-------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q 366 (1931)
+.....+| +||++|.++++.++. .|++++++||+|||.+|+.++...+. .+.+++|||||++|+.|
T Consensus 592 ~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~------~g~qvlvLvPT~eLA~Q 664 (1147)
T PRK10689 592 LFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE------NHKQVAVLVPTTLLAQQ 664 (1147)
T ss_pred HHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH------cCCeEEEEeCcHHHHHH
Confidence 33455665 799999999999876 58999999999999999987765543 35789999999999999
Q ss_pred HHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhc-CCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCC
Q 000174 367 QAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREF-DTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKH 442 (1931)
Q Consensus 367 ~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~-~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~ 442 (1931)
+++.+++.+ ++++..++|..+... ....|.... ..++|||+||+.|. ..+.+.++++||+||+|++..
T Consensus 665 ~~~~f~~~~~~~~v~i~~l~g~~s~~e-~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrfG~-- 736 (1147)
T PRK10689 665 HYDNFRDRFANWPVRIEMLSRFRSAKE-QTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRFGV-- 736 (1147)
T ss_pred HHHHHHHhhccCCceEEEEECCCCHHH-HHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhcch--
Confidence 999999865 467888888765432 122333332 36899999997553 346778999999999999832
Q ss_pred cHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHH--HhcCCeEEEecchHHHhhhCCCCceeEEEe
Q 000174 443 PYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLE--SKLDSVVCTIKDRKELEKHVPMPSEVVVEY 520 (1931)
Q Consensus 443 ~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le--~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y 520 (1931)
.+...+ ...+ ..+++|+|||||.. ....+. ...+..+..... ....+....+.
T Consensus 737 ~~~e~l----k~l~--~~~qvLl~SATpip------------rtl~l~~~gl~d~~~I~~~p------~~r~~v~~~~~- 791 (1147)
T PRK10689 737 RHKERI----KAMR--ADVDILTLTATPIP------------RTLNMAMSGMRDLSIIATPP------ARRLAVKTFVR- 791 (1147)
T ss_pred hHHHHH----HhcC--CCCcEEEEcCCCCH------------HHHHHHHhhCCCcEEEecCC------CCCCCceEEEE-
Confidence 222222 2222 24789999999973 111111 011111000000 00000000000
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHh
Q 000174 521 DKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELG 600 (1931)
Q Consensus 521 ~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg 600 (1931)
T Consensus 792 -------------------------------------------------------------------------------- 791 (1147)
T PRK10689 792 -------------------------------------------------------------------------------- 791 (1147)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccccccc
Q 000174 601 QWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDS 680 (1931)
Q Consensus 601 ~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~ 680 (1931)
T Consensus 792 -------------------------------------------------------------------------------- 791 (1147)
T PRK10689 792 -------------------------------------------------------------------------------- 791 (1147)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCC
Q 000174 681 HVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNN 760 (1931)
Q Consensus 681 ~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~ 760 (1931)
. .....+ ...++.+. ..+.+++|||+++..++.+++.|.+. ++++++..+||
T Consensus 792 ------------------~-~~~~~~--k~~il~el--~r~gqv~vf~n~i~~ie~la~~L~~~--~p~~~v~~lHG--- 843 (1147)
T PRK10689 792 ------------------E-YDSLVV--REAILREI--LRGGQVYYLYNDVENIQKAAERLAEL--VPEARIAIGHG--- 843 (1147)
T ss_pred ------------------e-cCcHHH--HHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHh--CCCCcEEEEeC---
Confidence 0 000000 00111111 12468999999999999999999874 24678999999
Q ss_pred CccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCC-CCHHHHHHhhccCCCCCCcE
Q 000174 761 SQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLA-KTVLAYIQSRGRARKPGSDY 828 (1931)
Q Consensus 761 ~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p-~s~~~yiQr~GRa~R~Gs~~ 828 (1931)
+|++.+|++++.+|++|+++|||||+++++|||+|++++||..+.. .+..+|+||+||+||.|..+
T Consensus 844 --~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g 910 (1147)
T PRK10689 844 --QMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA 910 (1147)
T ss_pred --CCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCce
Confidence 9999999999999999999999999999999999999999955443 35678999999999999873
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=339.75 Aligned_cols=166 Identities=21% Similarity=0.305 Sum_probs=134.7
Q ss_pred chhhhhcCCCCCCcHHHHHHHHH-Hhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHH
Q 000174 292 KSEAKEKMPEEQARPYQLDVLEQ-AKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAE 369 (1931)
Q Consensus 292 ~~~~l~~~~~~~~~~~Q~eai~~-~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~ 369 (1931)
..+.+++.++.+|+|+|.++++. ++. +|+|+++|||||||++|.+++.+.+.. .+.++|+|+|+++|+.|+++
T Consensus 12 ~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-----~~~~~l~l~P~~aLa~q~~~ 86 (720)
T PRK00254 12 IKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-----EGGKAVYLVPLKALAEEKYR 86 (720)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-----cCCeEEEEeChHHHHHHHHH
Confidence 44778889999999999999987 455 999999999999999999988766542 24689999999999999999
Q ss_pred HHHHH--cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHH
Q 000174 370 VIREQ--TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLV 447 (1931)
Q Consensus 370 ~l~~~--~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~i 447 (1931)
.++.+ +++++..++|+...+ ..| +..++|+|+||+++..++.++...+.++++||+||+|.+... .+...
T Consensus 87 ~~~~~~~~g~~v~~~~Gd~~~~----~~~---~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~-~rg~~ 158 (720)
T PRK00254 87 EFKDWEKLGLRVAMTTGDYDST----DEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSY-DRGAT 158 (720)
T ss_pred HHHHHhhcCCEEEEEeCCCCCc----hhh---hccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCc-cchHH
Confidence 99864 478899999986532 223 357899999999999888877667899999999999999763 44455
Q ss_pred HHHHHhhcCCCCCcEEEEEeecCCC
Q 000174 448 MSEFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 448 m~~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
+..+..... ..+++++||||+.+
T Consensus 159 le~il~~l~--~~~qiI~lSATl~n 181 (720)
T PRK00254 159 LEMILTHML--GRAQILGLSATVGN 181 (720)
T ss_pred HHHHHHhcC--cCCcEEEEEccCCC
Confidence 555554443 34899999999864
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=326.66 Aligned_cols=158 Identities=17% Similarity=0.239 Sum_probs=117.3
Q ss_pred CCCCCCcHHHHHHHHHHhc-c-CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc-
Q 000174 299 MPEEQARPYQLDVLEQAKK-K-NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT- 375 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~-~-n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~- 375 (1931)
.|+. |+|||.++++.++. + ++++.++||||||.++.+++..+.. ......++++++||++|+.|++++++++.
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~---~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k 87 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEI---GAKVPRRLVYVVNRRTVVDQVTEEAEKIGE 87 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccc---cccccceEEEeCchHHHHHHHHHHHHHHHH
Confidence 4555 99999999999998 4 5788899999999966543332211 11223355667799999999999988754
Q ss_pred -------------------------CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccc--------
Q 000174 376 -------------------------GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSII-------- 422 (1931)
Q Consensus 376 -------------------------~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l-------- 422 (1931)
++++..++|+... ..+|.....+++|||+|+ |++.++.+
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~----~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~ 159 (844)
T TIGR02621 88 RLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFAD----NDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCGF 159 (844)
T ss_pred HhcccchhhhhhhhhhccccccccCCeEEEEEECCCCh----HHHHHhcCCCCcEEEECH----HHHcCCcccccccccc
Confidence 2678888999764 467877778999999994 55555544
Q ss_pred --------cccceeEEEEeCCCcccCCCcHHHHHHHHHhhc--CCCC-CcEEEEEeecCC
Q 000174 423 --------KMEAINLLILDECHHAVKKHPYSLVMSEFYHTT--SKEK-RPSVFGMTASPV 471 (1931)
Q Consensus 423 --------~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~--~~~~-~p~iLgLTATP~ 471 (1931)
.+.++.+||||||| +. ++|...+..+.... +... ..++++||||+.
T Consensus 160 ~~~pi~ag~L~~v~~LVLDEAD--Ld-~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p 216 (844)
T TIGR02621 160 KSRPLHAGFLGQDALIVHDEAH--LE-PAFQELLKQIMNEQQRPPDFLPLRVVELTATSR 216 (844)
T ss_pred ccccchhhhhccceEEEEehhh--hc-cccHHHHHHHHHhcccCcccccceEEEEecCCC
Confidence 26889999999999 33 58999988888753 2211 258999999975
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-29 Score=311.74 Aligned_cols=335 Identities=24% Similarity=0.304 Sum_probs=235.7
Q ss_pred CCCCCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH
Q 000174 299 MPEEQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE 373 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~ 373 (1931)
.....||+||.+++..+.+ +..++++|||+|||++++..+..+. ..+||||||.+|+.||++.+..
T Consensus 32 ~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~---------~~~Lvlv~~~~L~~Qw~~~~~~ 102 (442)
T COG1061 32 AFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK---------RSTLVLVPTKELLDQWAEALKK 102 (442)
T ss_pred ccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc---------CCEEEEECcHHHHHHHHHHHHH
Confidence 3456899999999999876 5789999999999999999887642 2399999999999999999998
Q ss_pred HcCCc--EEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHH
Q 000174 374 QTGYV--VGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEF 451 (1931)
Q Consensus 374 ~~~l~--v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~ 451 (1931)
+++.. ++.+.|+... + ....|+|+|.|.+........+....+++||||||||+..+ .|..+...+
T Consensus 103 ~~~~~~~~g~~~~~~~~-------~----~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~-~~~~~~~~~ 170 (442)
T COG1061 103 FLLLNDEIGIYGGGEKE-------L----EPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP-SYRRILELL 170 (442)
T ss_pred hcCCccccceecCceec-------c----CCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcH-HHHHHHHhh
Confidence 88774 5666654321 0 11479999999998753122344558999999999999885 778777766
Q ss_pred HhhcCCCCCcE-EEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHh-hhCCCCceeEEEeccchhhhHH
Q 000174 452 YHTTSKEKRPS-VFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELE-KHVPMPSEVVVEYDKAASLWSL 529 (1931)
Q Consensus 452 ~~~~~~~~~p~-iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~-~~~~~p~e~~~~y~~~~~~~~l 529 (1931)
.. +. +|||||||.+.++- .+..+...++..++...-.+.+. .++..+....+...........
T Consensus 171 ~~-------~~~~LGLTATp~R~D~~--------~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~ 235 (442)
T COG1061 171 SA-------AYPRLGLTATPEREDGG--------RIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEERE 235 (442)
T ss_pred hc-------ccceeeeccCceeecCC--------chhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHH
Confidence 54 33 99999999875521 44566666777777776666665 3333333332222111000000
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000174 530 HEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQ 609 (1931)
Q Consensus 530 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~ 609 (1931)
. ... ..............-.|
T Consensus 236 ~---~~~-------------------------------------------------~~~~~~~~~~~~~~~~~------- 256 (442)
T COG1061 236 Y---AKE-------------------------------------------------SARFRELLRARGTLRAE------- 256 (442)
T ss_pred h---hhh-------------------------------------------------hhhhhhhhhhhhhhhHH-------
Confidence 0 000 00000000000000000
Q ss_pred HHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCch
Q 000174 610 SFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHV 689 (1931)
Q Consensus 610 ~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~ 689 (1931)
.....
T Consensus 257 ----------------------~~~~~----------------------------------------------------- 261 (442)
T COG1061 257 ----------------------NEARR----------------------------------------------------- 261 (442)
T ss_pred ----------------------HHHHH-----------------------------------------------------
Confidence 00000
Q ss_pred hhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHH
Q 000174 690 DVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQM 769 (1931)
Q Consensus 690 ~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R 769 (1931)
.......|+..+..++.... .+.++|||+....++..++..+.. +++ +..+.| ..+..+|
T Consensus 262 --------~~~~~~~~~~~~~~~~~~~~--~~~~~lif~~~~~~a~~i~~~~~~----~~~-~~~it~-----~t~~~eR 321 (442)
T COG1061 262 --------IAIASERKIAAVRGLLLKHA--RGDKTLIFASDVEHAYEIAKLFLA----PGI-VEAITG-----ETPKEER 321 (442)
T ss_pred --------HhhccHHHHHHHHHHHHHhc--CCCcEEEEeccHHHHHHHHHHhcC----CCc-eEEEEC-----CCCHHHH
Confidence 00012345566666665542 578999999999999999999987 455 889999 9999999
Q ss_pred HHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCC
Q 000174 770 QETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARK 823 (1931)
Q Consensus 770 ~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R 823 (1931)
.+++++|+.|++++||++.|+.||+|+|+++++|...+..|+..|+||+||.-|
T Consensus 322 ~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 322 EAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred HHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 999999999999999999999999999999999999999999999999999999
|
|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=307.17 Aligned_cols=405 Identities=19% Similarity=0.199 Sum_probs=254.3
Q ss_pred CCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc-
Q 000174 302 EQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT- 375 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~- 375 (1931)
..+|+||.+.+.|+.. -|+|++++||+|||++.+..+.++... .+-.++-||+||...| ..|.++|++|+
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~---~~~~GPfLVi~P~StL-~NW~~Ef~rf~P 241 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGR---KGIPGPFLVIAPKSTL-DNWMNEFKRFTP 241 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHh---cCCCCCeEEEeeHhhH-HHHHHHHHHhCC
Confidence 5799999999999876 579999999999999998877665543 2445679999999888 55999999998
Q ss_pred CCcEEEEeCCCcccccchHHHHhhcC--CccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCc-HHHHHHHHH
Q 000174 376 GYVVGHYCGEMGQDFWDAQRWQREFD--TKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHP-YSLVMSEFY 452 (1931)
Q Consensus 376 ~l~v~~~~G~~~~~~~~~~~w~~~~~--~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~-~~~im~~~~ 452 (1931)
++++.+++|+... +....+..+. ..+|+|+|+++.+.. ..++.--.|.+||+|||||+.+.+. ...+++.|.
T Consensus 242 ~l~~~~~~Gdk~e---R~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~ 316 (971)
T KOG0385|consen 242 SLNVVVYHGDKEE---RAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEKSKLSKILREFK 316 (971)
T ss_pred CcceEEEeCCHHH---HHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchhhHHHHHHHHhc
Confidence 6999999998532 2233333332 689999999999864 4456667899999999999998532 334455444
Q ss_pred hhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHh---cCCeEEEecchHHHhhhCCCCceeEEEeccchhhhHH
Q 000174 453 HTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESK---LDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSL 529 (1931)
Q Consensus 453 ~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~---l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l 529 (1931)
. ...|++|+||.+ ++|..|+++ +-+.|+.. .+.+..+...... .........|
T Consensus 317 ~-------~nrLLlTGTPLQ-----------NNL~ELWaLLnFllPdiF~~--~e~F~swF~~~~~----~~~~e~v~~L 372 (971)
T KOG0385|consen 317 T-------DNRLLLTGTPLQ-----------NNLHELWALLNFLLPDIFNS--AEDFDSWFDFTNC----EGDQELVSRL 372 (971)
T ss_pred c-------cceeEeeCCccc-----------ccHHHHHHHHHhhchhhccC--HHHHHHHHccccc----ccCHHHHHHH
Confidence 3 668999999996 234445544 44444432 2333332221100 0000111122
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHH--HhHHHHHHH
Q 000174 530 HEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGE--LGQWCAYKV 607 (1931)
Q Consensus 530 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~--lg~~~a~~~ 607 (1931)
+..++.+ +. +|.+.++.+.|+.+.....++-.. -..|...
T Consensus 373 h~vL~pF-------lL-----------------------------RR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~-- 414 (971)
T KOG0385|consen 373 HKVLRPF-------LL-----------------------------RRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKA-- 414 (971)
T ss_pred HhhhhHH-------HH-----------------------------HHHHHhHhhcCCCcceeeEeccchHHHHHHHHH--
Confidence 2222111 11 111111111111111100000000 0001000
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCC
Q 000174 608 AQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGE 687 (1931)
Q Consensus 608 ~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e 687 (1931)
.+.+.+..-... ... ...-|..+.-.|..+.. |+-|.++..+.++ ...++
T Consensus 415 --iL~kdl~~~n~~-~~~----~k~kL~NI~mQLRKccn----------------------HPYLF~g~ePg~p-yttde 464 (971)
T KOG0385|consen 415 --ILMKDLDALNGE-GKG----EKTKLQNIMMQLRKCCN----------------------HPYLFDGAEPGPP-YTTDE 464 (971)
T ss_pred --HHHhcchhhccc-ccc----hhhHHHHHHHHHHHhcC----------------------CccccCCCCCCCC-CCcch
Confidence 000000000000 000 11112222222211110 3333333222111 12222
Q ss_pred chhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHH
Q 000174 688 HVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTF 767 (1931)
Q Consensus 688 ~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~ 767 (1931)
++ ..-|.|+..|-++|... ...++|++||.+...+.+.|.++..- .++....|.| +++.+
T Consensus 465 hL----------v~nSGKm~vLDkLL~~L-k~~GhRVLIFSQmt~mLDILeDyc~~----R~y~ycRiDG-----St~~e 524 (971)
T KOG0385|consen 465 HL----------VTNSGKMLVLDKLLPKL-KEQGHRVLIFSQMTRMLDILEDYCML----RGYEYCRLDG-----STSHE 524 (971)
T ss_pred HH----------HhcCcceehHHHHHHHH-HhCCCeEEEeHHHHHHHHHHHHHHHh----cCceeEeecC-----CCCcH
Confidence 21 13478999999999887 56799999999999999999999875 7899999999 99999
Q ss_pred HHHHHHHHhhcCC---ceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 768 QMQETIAKFRDGR---VTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 768 ~R~~~l~~Fr~G~---~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
+|...++.|.... .-+|++|.+++-|||+..++.||.||..|||....|...||+|+||+
T Consensus 525 eR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~ 587 (971)
T KOG0385|consen 525 EREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQK 587 (971)
T ss_pred HHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCc
Confidence 9999999999543 44899999999999999999999999999999999999999999998
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-29 Score=332.61 Aligned_cols=166 Identities=19% Similarity=0.212 Sum_probs=128.7
Q ss_pred chhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHH
Q 000174 292 KSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEV 370 (1931)
Q Consensus 292 ~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~ 370 (1931)
..+.+.+.++. |+++|.++++.+.+ +|+|+++|||||||++|.+++.+.+.. +.++|+|+|+++|+.|++++
T Consensus 12 ~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~------~~k~v~i~P~raLa~q~~~~ 84 (674)
T PRK01172 12 FLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA------GLKSIYIVPLRSLAMEKYEE 84 (674)
T ss_pred HHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh------CCcEEEEechHHHHHHHHHH
Confidence 33566666654 99999999999988 899999999999999999988776652 35799999999999999999
Q ss_pred HHHH--cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHH
Q 000174 371 IREQ--TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVM 448 (1931)
Q Consensus 371 l~~~--~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im 448 (1931)
++++ +|.++...+|+...+. ..+...+|+|+||+++..++.+....+.++++||+||||++.+. .+...+
T Consensus 85 ~~~l~~~g~~v~~~~G~~~~~~-------~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~-~rg~~l 156 (674)
T PRK01172 85 LSRLRSLGMRVKISIGDYDDPP-------DFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDE-DRGPTL 156 (674)
T ss_pred HHHHhhcCCeEEEEeCCCCCCh-------hhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCC-CccHHH
Confidence 9874 3788888888764321 12357899999999998888776666899999999999999753 444444
Q ss_pred HHHHhhcC-CCCCcEEEEEeecCCC
Q 000174 449 SEFYHTTS-KEKRPSVFGMTASPVN 472 (1931)
Q Consensus 449 ~~~~~~~~-~~~~p~iLgLTATP~~ 472 (1931)
..++.... .....++++||||+.+
T Consensus 157 e~ll~~~~~~~~~~riI~lSATl~n 181 (674)
T PRK01172 157 ETVLSSARYVNPDARILALSATVSN 181 (674)
T ss_pred HHHHHHHHhcCcCCcEEEEeCccCC
Confidence 44333221 1234789999999864
|
|
| >PRK14718 ribonuclease III; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-30 Score=299.01 Aligned_cols=130 Identities=32% Similarity=0.508 Sum_probs=110.0
Q ss_pred HHHhhhcCCCCChhHHH-HHhccccCCCCCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHHHHHH
Q 000174 1372 IQLKDKINYPVPASKIL-EALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYA 1450 (1931)
Q Consensus 1372 ~~l~~~l~~~~~~~~ll-~AlT~~s~~~~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L~~~a 1450 (1931)
.+|+++|||.|.+..|| +||||+|+.. .||||||||||+||+++++.|||.+||+++||.||.+|+.+|||.+|+.+|
T Consensus 4 ~~LEkrLGY~Fkn~~LL~eALTH~Sys~-e~NERLEFLGDAVL~liVse~Lf~~fPdl~EGeLT~LRS~LVSnetLA~IA 82 (467)
T PRK14718 4 SQLESRLRYEFRNAELLRQALTHRSHSA-THNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIA 82 (467)
T ss_pred HHHHHHhCCCcCCHHHHHHHHhccCcCc-ccHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhHHHHHHH
Confidence 35788899999665555 9999999865 489999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccceeccccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCCCCcccc
Q 000174 1451 LSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSSYRVL 1530 (1931)
Q Consensus 1451 ~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1530 (1931)
+++||..||+... +. .. ... ..
T Consensus 83 r~LGL~d~Lrlg~---------gE---------------------------------------~~--------sgG--~~ 104 (467)
T PRK14718 83 QALNISDGLRLGE---------GE---------------------------------------LR--------SGG--FR 104 (467)
T ss_pred HHcCchHHHhhCC---------cc---------------------------------------cc--------cCC--CC
Confidence 9999999998643 00 00 000 12
Q ss_pred ccchhhhHHHHHhhheeeccCHHHHHHHHh
Q 000174 1531 SSKTLADVVEALIGVYYVEGGKDAANHLMK 1560 (1931)
Q Consensus 1531 ~~K~lADvvEALiGA~~l~~G~~~a~~~~~ 1560 (1931)
.++++||+|||||||+|+|+|++.+..|+.
T Consensus 105 ~~sILADvFEALIGAIYLDsG~e~a~~fI~ 134 (467)
T PRK14718 105 RPSILADAFEAIIGAVFLDGGFEAAQGVIK 134 (467)
T ss_pred ChhHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 578999999999999999999987776653
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-29 Score=327.80 Aligned_cols=415 Identities=18% Similarity=0.193 Sum_probs=262.0
Q ss_pred CCCCcHHHHHHHHHHhc----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcC
Q 000174 301 EEQARPYQLDVLEQAKK----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG 376 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~ 376 (1931)
...|+++|+++++.+.+ +++++.++||||||.+|+.++.+.+.. ++++|||+||++|+.|+.+.+++.++
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~------g~~vLvLvPt~~L~~Q~~~~l~~~fg 215 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ------GKQALVLVPEIALTPQMLARFRARFG 215 (679)
T ss_pred CCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc------CCeEEEEeCcHHHHHHHHHHHHHHhC
Confidence 34799999999999986 679999999999999999988877652 46799999999999999999999999
Q ss_pred CcEEEEeCCCcccccchHHHHhhcC-CccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCC---Cc-H-HHHHHH
Q 000174 377 YVVGHYCGEMGQDFWDAQRWQREFD-TKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKK---HP-Y-SLVMSE 450 (1931)
Q Consensus 377 l~v~~~~G~~~~~~~~~~~w~~~~~-~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~---~~-~-~~im~~ 450 (1931)
.++..++|+.+... +...|.+... ..+|||+|++.++ ..+.++++||+||+|+..-. .+ | ...+..
T Consensus 216 ~~v~~~~s~~s~~~-r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~ 287 (679)
T PRK05580 216 APVAVLHSGLSDGE-RLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAV 287 (679)
T ss_pred CCEEEEECCCCHHH-HHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHHH
Confidence 99999999876532 3466776654 5799999998875 56889999999999987532 11 1 111111
Q ss_pred HHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccc-------
Q 000174 451 FYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKA------- 523 (1931)
Q Consensus 451 ~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~------- 523 (1931)
+.. .....+++++||||.. ..+.....- .-.......+ . .-...|...++.....
T Consensus 288 ~ra---~~~~~~~il~SATps~-----------~s~~~~~~g-~~~~~~l~~r--~-~~~~~p~v~~id~~~~~~~~~~~ 349 (679)
T PRK05580 288 VRA---KLENIPVVLGSATPSL-----------ESLANAQQG-RYRLLRLTKR--A-GGARLPEVEIIDMRELLRGENGS 349 (679)
T ss_pred HHh---hccCCCEEEEcCCCCH-----------HHHHHHhcc-ceeEEEeccc--c-ccCCCCeEEEEechhhhhhcccC
Confidence 111 1223678999999962 011111100 0011111100 0 0112343333332110
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHH
Q 000174 524 ASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWC 603 (1931)
Q Consensus 524 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~ 603 (1931)
.....+.+.+++....-++.+...+++....++.++.++....|+.+...+.-++.. -.-.++||
T Consensus 350 ~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~---------------~~l~Ch~C 414 (679)
T PRK05580 350 FLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQ---------------RRLRCHHC 414 (679)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCC---------------CeEECCCC
Confidence 011223333333322222233334444444444444444333222221110000000 00001111
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccc
Q 000174 604 AYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVV 683 (1931)
Q Consensus 604 a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~ 683 (1931)
.+.. .
T Consensus 415 g~~~-----------------------------------------------------------------------~---- 419 (679)
T PRK05580 415 GYQE-----------------------------------------------------------------------P---- 419 (679)
T ss_pred cCCC-----------------------------------------------------------------------C----
Confidence 1000 0
Q ss_pred cCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCcc
Q 000174 684 SGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQE 763 (1931)
Q Consensus 684 s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~ 763 (1931)
.. ...+......|......++.+++.|.++ +++.++..+|| +
T Consensus 420 -------------~~------------------~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~--fp~~~v~~~~~-----d 461 (679)
T PRK05580 420 -------------IP------------------KACPECGSTDLVPVGPGTERLEEELAEL--FPEARILRIDR-----D 461 (679)
T ss_pred -------------CC------------------CCCCCCcCCeeEEeeccHHHHHHHHHHh--CCCCcEEEEec-----c
Confidence 00 0011122234666677788888888774 35788999999 6
Q ss_pred cc--HHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEE--cCCCCC----------HHHHHHhhccCCCCCCcEE
Q 000174 764 MR--TFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIR--FDLAKT----------VLAYIQSRGRARKPGSDYI 829 (1931)
Q Consensus 764 ~~--~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~--fD~p~s----------~~~yiQr~GRa~R~Gs~~i 829 (1931)
+. ..++++++++|++|+++|||+|+++++|+|+|++++|+. +|.+.+ ...|+|++|||||.+..+.
T Consensus 462 ~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~ 541 (679)
T PRK05580 462 TTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGE 541 (679)
T ss_pred ccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCE
Confidence 65 567899999999999999999999999999999999954 454443 3678999999999999988
Q ss_pred EEEecCChhHHHHHHHHHHHHHHHHHHHHhhccccccccccccccc
Q 000174 830 LMIERGNLSHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISV 875 (1931)
Q Consensus 830 vlv~~~~~~~~~~l~~~~~~e~~l~~~~i~r~~l~~~~~~~~~~~~ 875 (1931)
+++++.++++..+........+.+.+..++.+...+++|+.++..+
T Consensus 542 viiqT~~p~~~~~~~~~~~d~~~f~~~El~~R~~~~~PPf~~l~~i 587 (679)
T PRK05580 542 VLIQTYHPEHPVIQALLAQDYDAFAEQELEERRAAGYPPFGRLALL 587 (679)
T ss_pred EEEEeCCCCCHHHHHHHhCCHHHHHHHHHHHHHhcCCCCHHHhhEe
Confidence 9988888877766655556666777777777777788888876655
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-28 Score=328.85 Aligned_cols=145 Identities=18% Similarity=0.230 Sum_probs=107.7
Q ss_pred EEeCCCchHHHHHHHHHHHHHHHhhh-------cCCCcEEEEEeCChhHHHHHHHHHHH---------------HcCCcE
Q 000174 322 AFLETGAGKTLIAVLLIRSICNDLQR-------QNKKMLAVFLVPKVPLVYQQAEVIRE---------------QTGYVV 379 (1931)
Q Consensus 322 l~~~TGsGKTliall~i~~~l~~~~~-------~~~~~~vL~LvPT~~Lv~Q~~~~l~~---------------~~~l~v 379 (1931)
|++|||||||++|.+|+...+..... ...+.++|+|+|+++|+.|+.+.++. .++++|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57899999999999987766543211 12357899999999999999998864 136789
Q ss_pred EEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcc-cccccceeEEEEeCCCcccCCC---cHHHHHHHHHhhc
Q 000174 380 GHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS-IIKMEAINLLILDECHHAVKKH---PYSLVMSEFYHTT 455 (1931)
Q Consensus 380 ~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~-~l~l~~i~lLV~DEaH~~~~~~---~~~~im~~~~~~~ 455 (1931)
.+.+|+...+ +.++...+.++|||+||++|..+|.+. ...+.++++|||||+|.+.+.. .+...+..+....
T Consensus 81 ~vrtGDt~~~----eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~ 156 (1490)
T PRK09751 81 GIRTGDTPAQ----ERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL 156 (1490)
T ss_pred EEEECCCCHH----HHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC
Confidence 9999987643 222223357899999999999887653 3468999999999999998641 2445555555543
Q ss_pred CCCCCcEEEEEeecCCC
Q 000174 456 SKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 456 ~~~~~p~iLgLTATP~~ 472 (1931)
+ ..+|+||||||..+
T Consensus 157 ~--~~~QrIgLSATI~n 171 (1490)
T PRK09751 157 H--TSAQRIGLSATVRS 171 (1490)
T ss_pred C--CCCeEEEEEeeCCC
Confidence 2 34799999999753
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-28 Score=308.44 Aligned_cols=328 Identities=19% Similarity=0.198 Sum_probs=233.4
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhh--hcCCCcEEEEEeCChhHHHHHHHH
Q 000174 294 EAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQ--RQNKKMLAVFLVPKVPLVYQQAEV 370 (1931)
Q Consensus 294 ~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~--~~~~~~~vL~LvPT~~Lv~Q~~~~ 370 (1931)
+.+... +..|||.|.+|++.+.+ +|++|.+|||||||++|++|+...+.... ....+..+|+|+|-++|...+...
T Consensus 14 ~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~r 92 (814)
T COG1201 14 EWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRR 92 (814)
T ss_pred HHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHH
Confidence 334444 99999999999999999 99999999999999999999987776541 123457899999999999999998
Q ss_pred HHHH---cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhccc--ccccceeEEEEeCCCcccCCCcHH
Q 000174 371 IREQ---TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSI--IKMEAINLLILDECHHAVKKHPYS 445 (1931)
Q Consensus 371 l~~~---~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~--l~l~~i~lLV~DEaH~~~~~~~~~ 445 (1931)
++.+ +|+.+.+-||++.... .-+...+.+||+|+||+.|.-++.... -.+.++.++|+||.|.+..+.--.
T Consensus 93 L~~~~~~~G~~v~vRhGDT~~~e----r~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~ 168 (814)
T COG1201 93 LEEPLRELGIEVAVRHGDTPQSE----KQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGV 168 (814)
T ss_pred HHHHHHHcCCccceecCCCChHH----hhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccch
Confidence 8874 5899999999876432 222334689999999999998776633 258999999999999998642222
Q ss_pred HH---HHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCC-----eEEEecchHHHhhhCCCCceeE
Q 000174 446 LV---MSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDS-----VVCTIKDRKELEKHVPMPSEVV 517 (1931)
Q Consensus 446 ~i---m~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~-----~i~t~~~~~~l~~~~~~p~e~~ 517 (1931)
++ +..+..... .++++|||||-.. +. .+..+|.. .|..... ...+...+
T Consensus 169 ~Lsl~LeRL~~l~~---~~qRIGLSATV~~------~~-------~varfL~g~~~~~~Iv~~~~-------~k~~~i~v 225 (814)
T COG1201 169 QLALSLERLRELAG---DFQRIGLSATVGP------PE-------EVAKFLVGFGDPCEIVDVSA-------AKKLEIKV 225 (814)
T ss_pred hhhhhHHHHHhhCc---ccEEEeehhccCC------HH-------HHHHHhcCCCCceEEEEccc-------CCcceEEE
Confidence 21 233333222 6999999999653 11 11111111 1111100 00000000
Q ss_pred EEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHH
Q 000174 518 VEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALG 597 (1931)
Q Consensus 518 ~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~ 597 (1931)
+.-...
T Consensus 226 ~~p~~~-------------------------------------------------------------------------- 231 (814)
T COG1201 226 ISPVED-------------------------------------------------------------------------- 231 (814)
T ss_pred EecCCc--------------------------------------------------------------------------
Confidence 000000
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccc
Q 000174 598 ELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGEL 677 (1931)
Q Consensus 598 ~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l 677 (1931)
..|.
T Consensus 232 --~~~~-------------------------------------------------------------------------- 235 (814)
T COG1201 232 --LIYD-------------------------------------------------------------------------- 235 (814)
T ss_pred --cccc--------------------------------------------------------------------------
Confidence 0000
Q ss_pred cccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEc
Q 000174 678 LDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIG 757 (1931)
Q Consensus 678 ~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G 757 (1931)
......-...+.+++++ ...+|||+|||.+|+.|+..|++. ....+..-||
T Consensus 236 ---------------------~~~~~~~~~~i~~~v~~-----~~ttLIF~NTR~~aE~l~~~L~~~---~~~~i~~HHg 286 (814)
T COG1201 236 ---------------------EELWAALYERIAELVKK-----HRTTLIFTNTRSGAERLAFRLKKL---GPDIIEVHHG 286 (814)
T ss_pred ---------------------cchhHHHHHHHHHHHhh-----cCcEEEEEeChHHHHHHHHHHHHh---cCCceeeecc
Confidence 00000112233344433 347999999999999999999985 2367788888
Q ss_pred cCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCC-C--CcEEEEEe
Q 000174 758 HNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKP-G--SDYILMIE 833 (1931)
Q Consensus 758 ~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~-G--s~~ivlv~ 833 (1931)
+++.++|.++.++|++|+.+++|||+-+|-|||+.++++||+|..|.+...++||+||+|+. | ++++++..
T Consensus 287 -----SlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~ 360 (814)
T COG1201 287 -----SLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAE 360 (814)
T ss_pred -----cccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999863 3 55777754
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-27 Score=290.75 Aligned_cols=321 Identities=18% Similarity=0.242 Sum_probs=234.2
Q ss_pred CCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCC
Q 000174 299 MPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY 377 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l 377 (1931)
.|+...|+-|.++|+.++. +|+|+.+|||.||+++|.+|++-. .+.+|||+|-.+|...|.+.++. .|+
T Consensus 13 fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---------~G~TLVVSPLiSLM~DQV~~l~~-~Gi 82 (590)
T COG0514 13 FGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---------EGLTLVVSPLISLMKDQVDQLEA-AGI 82 (590)
T ss_pred hCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---------CCCEEEECchHHHHHHHHHHHHH-cCc
Confidence 6889999999999999999 999999999999999999997532 24699999999999999999987 478
Q ss_pred cEEEEeCCCcccccchHHHHhhcC-CccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCC-CcHHHHHHHHHhhc
Q 000174 378 VVGHYCGEMGQDFWDAQRWQREFD-TKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKK-HPYSLVMSEFYHTT 455 (1931)
Q Consensus 378 ~v~~~~G~~~~~~~~~~~w~~~~~-~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~-~~~~~im~~~~~~~ 455 (1931)
++..+.+..+.+.|. ..+..+.. ..+++..+|++|...--...+....+.++||||||++... |.|+.....+-...
T Consensus 83 ~A~~lnS~l~~~e~~-~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~ 161 (590)
T COG0514 83 RAAYLNSTLSREERQ-QVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLR 161 (590)
T ss_pred eeehhhcccCHHHHH-HHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHH
Confidence 888888887665543 33333333 5899999999998654334455678899999999999963 56777666555444
Q ss_pred CCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhhhHHHHHHHH
Q 000174 456 SKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQ 535 (1931)
Q Consensus 456 ~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~ 535 (1931)
..-..+.++.||||-.. .+... +.+.|. ...+...+..++.++....
T Consensus 162 ~~~~~~p~~AlTATA~~--------~v~~D---I~~~L~---------------l~~~~~~~~sfdRpNi~~~------- 208 (590)
T COG0514 162 AGLPNPPVLALTATATP--------RVRDD---IREQLG---------------LQDANIFRGSFDRPNLALK------- 208 (590)
T ss_pred hhCCCCCEEEEeCCCCh--------HHHHH---HHHHhc---------------CCCcceEEecCCCchhhhh-------
Confidence 33345789999998432 11111 111111 0011111111111100000
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 000174 536 MEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTAL 615 (1931)
Q Consensus 536 l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l 615 (1931)
+..
T Consensus 209 -----------------------------------------------------------------------v~~------ 211 (590)
T COG0514 209 -----------------------------------------------------------------------VVE------ 211 (590)
T ss_pred -----------------------------------------------------------------------hhh------
Confidence 000
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhhhhh
Q 000174 616 QNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGA 695 (1931)
Q Consensus 616 ~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~ 695 (1931)
T Consensus 212 -------------------------------------------------------------------------------- 211 (590)
T COG0514 212 -------------------------------------------------------------------------------- 211 (590)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHH
Q 000174 696 AVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAK 775 (1931)
Q Consensus 696 ~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~ 775 (1931)
..+++.+.+ .|.+........+||||.+|..++.+++.|.. .|+++..+|| +|+..+|+.+-++
T Consensus 212 -----~~~~~~q~~--fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~----~g~~a~~YHa-----Gl~~~eR~~~q~~ 275 (590)
T COG0514 212 -----KGEPSDQLA--FLATVLPQLSKSGIIYCLTRKKVEELAEWLRK----NGISAGAYHA-----GLSNEERERVQQA 275 (590)
T ss_pred -----cccHHHHHH--HHHhhccccCCCeEEEEeeHHhHHHHHHHHHH----CCCceEEecC-----CCCHHHHHHHHHH
Confidence 000000000 11111123455699999999999999999998 6899999999 9999999999999
Q ss_pred hhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--EEEEEecCC
Q 000174 776 FRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--YILMIERGN 836 (1931)
Q Consensus 776 Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivlv~~~~ 836 (1931)
|..+++.|+|||.+.+.|||-|++..|||||+|.|+.+|+|-+|||||.|.. .+++..+++
T Consensus 276 f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D 338 (590)
T COG0514 276 FLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPED 338 (590)
T ss_pred HhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeecccc
Confidence 9999999999999999999999999999999999999999999999999977 555555554
|
|
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-28 Score=259.10 Aligned_cols=173 Identities=17% Similarity=0.216 Sum_probs=145.3
Q ss_pred CcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHH
Q 000174 290 GKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQA 368 (1931)
Q Consensus 290 ~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~ 368 (1931)
++...++-..||..|.+.|.++||.++- -+++..+..|.|||.+|++.-++-++ ..++...++++|.||+|+.|+.
T Consensus 51 pellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqie---pv~g~vsvlvmchtrelafqi~ 127 (387)
T KOG0329|consen 51 PELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE---PVDGQVSVLVMCHTRELAFQIS 127 (387)
T ss_pred HHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcC---CCCCeEEEEEEeccHHHHHHHH
Confidence 3455788889999999999999999766 99999999999999999997655443 3345578999999999999999
Q ss_pred HHHHHHc----CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcH
Q 000174 369 EVIREQT----GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPY 444 (1931)
Q Consensus 369 ~~l~~~~----~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~ 444 (1931)
++..++. +.+|.+++|++.... +. ..+.+.++|+|+||++++.+.+++.+.+.++...|+|||+.++..-..
T Consensus 128 ~ey~rfskymP~vkvaVFfGG~~Ikk-de---e~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDM 203 (387)
T KOG0329|consen 128 KEYERFSKYMPSVKVSVFFGGLFIKK-DE---ELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDM 203 (387)
T ss_pred HHHHHHHhhCCCceEEEEEcceeccc-cH---HHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHH
Confidence 9887764 689999999987632 11 122348899999999999999999999999999999999999987778
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 445 SLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 445 ~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
+..++++....|.. .+++.+|||..
T Consensus 204 rRDvQEifr~tp~~--KQvmmfsatls 228 (387)
T KOG0329|consen 204 RRDVQEIFRMTPHE--KQVMMFSATLS 228 (387)
T ss_pred HHHHHHHhhcCccc--ceeeeeeeecc
Confidence 88888888876654 78999999975
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=322.96 Aligned_cols=299 Identities=17% Similarity=0.156 Sum_probs=206.1
Q ss_pred CCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc---CC
Q 000174 302 EQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT---GY 377 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~---~l 377 (1931)
.+|+++|.++++.++. +|+++++|||+|||.. ++++...+.. .+.+++||+||++|+.|+++.++.+. ++
T Consensus 79 ~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f-~l~~~~~l~~-----~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~ 152 (1176)
T PRK09401 79 SKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTF-GLVMSLYLAK-----KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGC 152 (1176)
T ss_pred CCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHH-HHHHHHHHHh-----cCCeEEEEeccHHHHHHHHHHHHHHhhhcCc
Confidence 4899999999999998 9999999999999964 4444333321 35789999999999999999999865 56
Q ss_pred cEEEEeCCCccc-ccchHHHHhhc-CCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCC----------CcHH
Q 000174 378 VVGHYCGEMGQD-FWDAQRWQREF-DTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKK----------HPYS 445 (1931)
Q Consensus 378 ~v~~~~G~~~~~-~~~~~~w~~~~-~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~----------~~~~ 445 (1931)
.+..++|+.+.. ......+.... ..++|+|+||++|.+++. .+....+++||+||||++++. .+|.
T Consensus 153 ~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~ 230 (1176)
T PRK09401 153 GVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFS 230 (1176)
T ss_pred eEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHhCCCC
Confidence 677777664321 11222333333 368999999999999886 366777999999999999852 3453
Q ss_pred -HHHHHHHhhcCC----------------------CCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecc
Q 000174 446 -LVMSEFYHTTSK----------------------EKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKD 502 (1931)
Q Consensus 446 -~im~~~~~~~~~----------------------~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~ 502 (1931)
..+..++...+. ....+++++|||.... +. ....+...+. +.+
T Consensus 231 ~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~-~~--------~~~l~~~ll~---~~v-- 296 (1176)
T PRK09401 231 EEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPR-GN--------RVKLFRELLG---FEV-- 296 (1176)
T ss_pred HHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCcc-ch--------HHHHhhccce---EEe--
Confidence 344444443321 0135677777775310 00 0000000000 000
Q ss_pred hHHHhhhCCCCceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhh
Q 000174 503 RKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGA 582 (1931)
Q Consensus 503 ~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~ 582 (1931)
..+
T Consensus 297 --------~~~--------------------------------------------------------------------- 299 (1176)
T PRK09401 297 --------GSP--------------------------------------------------------------------- 299 (1176)
T ss_pred --------cCc---------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhccccccccccccccc
Q 000174 583 ANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSEN 662 (1931)
Q Consensus 583 ~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~ 662 (1931)
T Consensus 300 -------------------------------------------------------------------------------- 299 (1176)
T PRK09401 300 -------------------------------------------------------------------------------- 299 (1176)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCccccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhH---HHHHHH
Q 000174 663 GFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVA---ALVLPK 739 (1931)
Q Consensus 663 ~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~t---a~~L~~ 739 (1931)
......+.+. .. ....|...|.+++... +.++||||+++.. |+.|++
T Consensus 300 ---~~~~rnI~~~---------------------yi--~~~~k~~~L~~ll~~l----~~~~LIFv~t~~~~~~ae~l~~ 349 (1176)
T PRK09401 300 ---VFYLRNIVDS---------------------YI--VDEDSVEKLVELVKRL----GDGGLIFVPSDKGKEYAEELAE 349 (1176)
T ss_pred ---ccccCCceEE---------------------EE--EcccHHHHHHHHHHhc----CCCEEEEEecccChHHHHHHHH
Confidence 0000000000 00 0014666777777654 3479999999888 999999
Q ss_pred HHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEE----ecccccCCCCCC-CCEEEEcCCCC-----
Q 000174 740 VFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVA----TSVAEEGLDIRQ-CNVVIRFDLAK----- 809 (1931)
Q Consensus 740 ~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVa----TdVaeeGlDip~-~~lVI~fD~p~----- 809 (1931)
.|.. .++++..+|| +| ++.+++|++|+++|||| |++++||||+|+ +++||+||+|.
T Consensus 350 ~L~~----~gi~v~~~hg-----~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~ 415 (1176)
T PRK09401 350 YLED----LGINAELAIS-----GF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSL 415 (1176)
T ss_pred HHHH----CCCcEEEEeC-----cH-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEec
Confidence 9998 6899999999 77 23569999999999999 699999999999 89999999999
Q ss_pred -CHHHHHHhhccCCC
Q 000174 810 -TVLAYIQSRGRARK 823 (1931)
Q Consensus 810 -s~~~yiQr~GRa~R 823 (1931)
....|.||+||+-.
T Consensus 416 ~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 416 EEELAPPFLLLRLLS 430 (1176)
T ss_pred cccccCHHHHHHHHh
Confidence 77889999999864
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.3e-27 Score=289.99 Aligned_cols=98 Identities=21% Similarity=0.204 Sum_probs=85.9
Q ss_pred CCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHH----HHHHhhcCCceEEEEecccccCCC
Q 000174 720 EDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQE----TIAKFRDGRVTLLVATSVAEEGLD 795 (1931)
Q Consensus 720 ~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~----~l~~Fr~G~~~vLVaTdVaeeGlD 795 (1931)
.+.++||||+++..++.+++.|++.. ....+..+|| .+++.+|.+ ++++|++|+..|||||+++++|||
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~--~~~~~~~~h~-----~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiD 293 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENA--PEEEIMLLHS-----RFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLD 293 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhc--CCCeEEEEEC-----CCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceec
Confidence 45799999999999999999998731 2246899999 898888865 589999999999999999999999
Q ss_pred CCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 796 IRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 796 ip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
|+ +++||+++.| +.+|+||+||+||.|.+
T Consensus 294 i~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~ 322 (358)
T TIGR01587 294 IS-ADVMITELAP--IDSLIQRLGRLHRYGRK 322 (358)
T ss_pred cC-CCEEEEcCCC--HHHHHHHhccccCCCCC
Confidence 95 8999999876 78999999999998765
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-28 Score=306.19 Aligned_cols=432 Identities=20% Similarity=0.178 Sum_probs=254.9
Q ss_pred CCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcC
Q 000174 302 EQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG 376 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~ 376 (1931)
.+||+||.+.+.+++. +|+|+++++|+|||+..+..+..+..... -.++.|||||...+.. |..+|..|+.
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~---~~gpflvvvplst~~~-W~~ef~~w~~ 444 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQ---IHGPFLVVVPLSTITA-WEREFETWTD 444 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhh---ccCCeEEEeehhhhHH-HHHHHHHHhh
Confidence 6899999999999764 89999999999999988887776665432 2345999999876655 9999999999
Q ss_pred CcEEEEeCCCcccccc-hHHHHhhc----CCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHH
Q 000174 377 YVVGHYCGEMGQDFWD-AQRWQREF----DTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEF 451 (1931)
Q Consensus 377 l~v~~~~G~~~~~~~~-~~~w~~~~----~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~ 451 (1931)
.++.+|+|+.....-. .-.|-..- -..+++++|+++++..- .++.--.|.++++||||++.+.. ......+
T Consensus 445 mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk--~~L~~i~w~~~~vDeahrLkN~~--~~l~~~l 520 (1373)
T KOG0384|consen 445 MNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK--AELSKIPWRYLLVDEAHRLKNDE--SKLYESL 520 (1373)
T ss_pred hceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccH--hhhccCCcceeeecHHhhcCchH--HHHHHHH
Confidence 9999999987532211 11121111 14789999999997433 34566678999999999999743 2222221
Q ss_pred HhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhc---CCeEEEecchHHHh-hhCCCCceeEEEeccchhhh
Q 000174 452 YHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKL---DSVVCTIKDRKELE-KHVPMPSEVVVEYDKAASLW 527 (1931)
Q Consensus 452 ~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l---~~~i~t~~~~~~l~-~~~~~p~e~~~~y~~~~~~~ 527 (1931)
. ....-+.|++|+||.+ +.|..|.+++ .+.-+.. .+++. .+ ..
T Consensus 521 ~----~f~~~~rllitgTPlQ-----------NsikEL~sLl~Fl~P~kf~~--~~~f~~~~-~~--------------- 567 (1373)
T KOG0384|consen 521 N----QFKMNHRLLITGTPLQ-----------NSLKELWSLLHFLMPGKFDS--WDEFLEEF-DE--------------- 567 (1373)
T ss_pred H----HhcccceeeecCCCcc-----------ccHHHHHHHhcccCCCCCCc--HHHHHHhh-cc---------------
Confidence 1 1123568999999985 2444555444 3222211 11111 11 00
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000174 528 SLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKV 607 (1931)
Q Consensus 528 ~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~ 607 (1931)
.-.+.+..+...+.+++.- |.+.++.+.|..+...++.+-..--|-..|++
T Consensus 568 ~~e~~~~~L~~~L~P~~lR-----------------------------r~kkdvekslp~k~E~IlrVels~lQk~yYk~ 618 (1373)
T KOG0384|consen 568 ETEEQVRKLQQILKPFLLR-----------------------------RLKKDVEKSLPPKEETILRVELSDLQKQYYKA 618 (1373)
T ss_pred hhHHHHHHHHHHhhHHHHH-----------------------------HHHhhhccCCCCCcceEEEeehhHHHHHHHHH
Confidence 0011222232222222211 11111111111111111111000000001111
Q ss_pred HH-HHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCC
Q 000174 608 AQ-SFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGG 686 (1931)
Q Consensus 608 ~~-~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~ 686 (1931)
+. .-...+....... .-.+|.-+.+.-+|+.-.-.... .++..+.+.. .
T Consensus 619 ILtkN~~~LtKG~~g~-------~~~lLNimmELkKccNHpyLi~g-------------------aee~~~~~~~--~-- 668 (1373)
T KOG0384|consen 619 ILTKNFSALTKGAKGS-------TPSLLNIMMELKKCCNHPYLIKG-------------------AEEKILGDFR--D-- 668 (1373)
T ss_pred HHHhhHHHHhccCCCC-------CchHHHHHHHHHHhcCCccccCc-------------------HHHHHHHhhh--h--
Confidence 10 0011111111100 00122222222222211000000 0000000000 0
Q ss_pred CchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccH
Q 000174 687 EHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRT 766 (1931)
Q Consensus 687 e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~ 766 (1931)
-..++.+.+.+ ..|.|+..|-++|... ...++|+|||.+-+.+.+.|+++|.. .+++...|.| ++..
T Consensus 669 ~~~d~~L~~lI---~sSGKlVLLDKLL~rL-k~~GHrVLIFSQMVRmLDIL~eYL~~----r~ypfQRLDG-----svrg 735 (1373)
T KOG0384|consen 669 KMRDEALQALI---QSSGKLVLLDKLLPRL-KEGGHRVLIFSQMVRMLDILAEYLSL----RGYPFQRLDG-----SVRG 735 (1373)
T ss_pred cchHHHHHHHH---HhcCcEEeHHHHHHHH-hcCCceEEEhHHHHHHHHHHHHHHHH----cCCcceeccC-----Ccch
Confidence 00111222211 3467888888888776 46789999999999999999999987 8999999999 9999
Q ss_pred HHHHHHHHHhh---cCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEEEE---ecCChhHH
Q 000174 767 FQMQETIAKFR---DGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMI---ERGNLSHA 840 (1931)
Q Consensus 767 ~~R~~~l~~Fr---~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ivlv---~~~~~~~~ 840 (1931)
..|+.+|+.|. +..+-+|+||.+++-|||+..++.||.||..|||...+|+..||+|+||+-.|.| -+.+.-.+
T Consensus 736 elRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEe 815 (1373)
T KOG0384|consen 736 ELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEE 815 (1373)
T ss_pred HHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHH
Confidence 99999999999 4567799999999999999999999999999999999999999999999933332 12233344
Q ss_pred HHHHHH
Q 000174 841 TFLRNA 846 (1931)
Q Consensus 841 ~~l~~~ 846 (1931)
.+++.+
T Consensus 816 EilERA 821 (1373)
T KOG0384|consen 816 EILERA 821 (1373)
T ss_pred HHHHHH
Confidence 555544
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=297.60 Aligned_cols=98 Identities=16% Similarity=0.231 Sum_probs=85.8
Q ss_pred CceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHh-hcCCceEEEEecccccCCCCCCC
Q 000174 721 DFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKF-RDGRVTLLVATSVAEEGLDIRQC 799 (1931)
Q Consensus 721 ~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~F-r~G~~~vLVaTdVaeeGlDip~~ 799 (1931)
+.++|||++++..++.+.+.|.+.. +++.+..+|| ++++. ++++++| ++|+.+|||||++||+|||||+|
T Consensus 395 ~g~iLVFlpg~~ei~~l~~~L~~~~--~~~~v~~LHG-----~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V 465 (675)
T PHA02653 395 GSSGIVFVASVSQCEEYKKYLEKRL--PIYDFYIIHG-----KVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNA 465 (675)
T ss_pred CCcEEEEECcHHHHHHHHHHHHhhc--CCceEEeccC-----CcCHH--HHHHHHHhccCceeEEeccChhhccccccCe
Confidence 4689999999999999999998731 3688999999 88864 5778888 79999999999999999999999
Q ss_pred CEEEEcC---CCC---------CHHHHHHhhccCCCCCCc
Q 000174 800 NVVIRFD---LAK---------TVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 800 ~lVI~fD---~p~---------s~~~yiQr~GRa~R~Gs~ 827 (1931)
++||++| .|. |..+|+||+|||||....
T Consensus 466 ~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~~~G 505 (675)
T PHA02653 466 THVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRVSPG 505 (675)
T ss_pred eEEEECCCccCCCcccCcccccCHHHHHHhccCcCCCCCC
Confidence 9999999 565 888999999999998443
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-27 Score=299.79 Aligned_cols=395 Identities=16% Similarity=0.187 Sum_probs=241.9
Q ss_pred EEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhhc
Q 000174 321 IAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREF 400 (1931)
Q Consensus 321 Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~ 400 (1931)
++.++||||||.+|+.++.+.+. .++++|||+|+++|+.|+.+.+++.++.++.+++|+.+... +...|.+..
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~------~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~e-r~~~~~~~~ 73 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA------LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSE-KLQAWRKVK 73 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH------cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHH-HHHHHHHHH
Confidence 47899999999999988877765 25679999999999999999999999999999999876433 456787765
Q ss_pred C-CccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCC---Cc-H-HHHHHHHHhhcCCCCCcEEEEEeecCCCCC
Q 000174 401 D-TKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKK---HP-Y-SLVMSEFYHTTSKEKRPSVFGMTASPVNLK 474 (1931)
Q Consensus 401 ~-~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~---~~-~-~~im~~~~~~~~~~~~p~iLgLTATP~~~~ 474 (1931)
. ..+|||+|++.++ ..+.++++|||||+|+..-. .+ | ...+..+... .....++++||||.-
T Consensus 74 ~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~---~~~~~vil~SATPsl-- 141 (505)
T TIGR00595 74 NGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK---KFNCPVVLGSATPSL-- 141 (505)
T ss_pred cCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH---hcCCCEEEEeCCCCH--
Confidence 5 5799999999875 56889999999999998621 12 1 1112222221 123668999999972
Q ss_pred CCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccch----hhhHHHHHHHHHHHHHHHHHhhhhhh
Q 000174 475 GVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAA----SLWSLHEQLKQMEVAVEEAAQSSSRR 550 (1931)
Q Consensus 475 ~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~----~~~~l~~~i~~l~~~~~~~~~~~~~~ 550 (1931)
..+............-.... .....|...++...... ....+.+.+.+....-.+.+...+++
T Consensus 142 ------------es~~~~~~g~~~~~~l~~r~-~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrr 208 (505)
T TIGR00595 142 ------------ESYHNAKQKAYRLLVLTRRV-SGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRR 208 (505)
T ss_pred ------------HHHHHHhcCCeEEeechhhh-cCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 11111111111111000000 11223443343332211 12233334433333323334445555
Q ss_pred hhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 000174 551 SKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQ 630 (1931)
Q Consensus 551 ~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~ 630 (1931)
....++.++.+|....|+.+...+.-++... .-.++||.+...
T Consensus 209 Gya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~---------------~l~Ch~Cg~~~~---------------------- 251 (505)
T TIGR00595 209 GYSKNLLCRSCGYILCCPNCDVSLTYHKKEG---------------KLRCHYCGYQEP---------------------- 251 (505)
T ss_pred cCCCeeEhhhCcCccCCCCCCCceEEecCCC---------------eEEcCCCcCcCC----------------------
Confidence 5555555555554443333321110000000 000111111000
Q ss_pred HHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHH
Q 000174 631 ESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLI 710 (1931)
Q Consensus 631 ~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li 710 (1931)
++.
T Consensus 252 ----------------------------------------------~~~------------------------------- 254 (505)
T TIGR00595 252 ----------------------------------------------IPK------------------------------- 254 (505)
T ss_pred ----------------------------------------------CCC-------------------------------
Confidence 000
Q ss_pred HHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHH--HHHHHHHhhcCCceEEEEec
Q 000174 711 KILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQ--MQETIAKFRDGRVTLLVATS 788 (1931)
Q Consensus 711 ~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~--R~~~l~~Fr~G~~~vLVaTd 788 (1931)
.. ..-+... +......++.+++.|.+. +++.++..+|+ +++..+ .++++++|++|+++|||+|+
T Consensus 255 ----~C-p~C~s~~--l~~~g~Gte~~~e~l~~~--fp~~~v~~~d~-----d~~~~~~~~~~~l~~f~~g~~~ILVgT~ 320 (505)
T TIGR00595 255 ----TC-PQCGSED--LVYKGYGTEQVEEELAKL--FPGARIARIDS-----DTTSRKGAHEALLNQFANGKADILIGTQ 320 (505)
T ss_pred ----CC-CCCCCCe--eEeecccHHHHHHHHHhh--CCCCcEEEEec-----ccccCccHHHHHHHHHhcCCCCEEEeCc
Confidence 00 0001111 222334456666666653 35788999999 666544 48999999999999999999
Q ss_pred ccccCCCCCCCCEEE--EcCCCC----------CHHHHHHhhccCCCCCCcEEEEEecCChhHHHHHHHHHHHHHHHHHH
Q 000174 789 VAEEGLDIRQCNVVI--RFDLAK----------TVLAYIQSRGRARKPGSDYILMIERGNLSHATFLRNARNSEETLRKE 856 (1931)
Q Consensus 789 VaeeGlDip~~~lVI--~fD~p~----------s~~~yiQr~GRa~R~Gs~~ivlv~~~~~~~~~~l~~~~~~e~~l~~~ 856 (1931)
++++|+|+|++++|+ ++|... ....|+|++|||||.+..+.+++++.++++..+........+.+.+.
T Consensus 321 ~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~~~~~~~~~~d~~~f~~~ 400 (505)
T TIGR00595 321 MIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNHPAIQAALTGDYEAFYEQ 400 (505)
T ss_pred ccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCCHHHHHHHhCCHHHHHHH
Confidence 999999999999985 666432 35678999999999998888888888887776655555556666666
Q ss_pred HHhhccccccccccccccc
Q 000174 857 AIERTDLSHLKDTSRLISV 875 (1931)
Q Consensus 857 ~i~r~~l~~~~~~~~~~~~ 875 (1931)
.++.+...+++|+.++..+
T Consensus 401 el~~R~~~~~PPf~~l~~i 419 (505)
T TIGR00595 401 ELAQRRALNYPPFTRLIRL 419 (505)
T ss_pred HHHHHHHcCCCchhcEEEE
Confidence 6766777788888877654
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-25 Score=272.89 Aligned_cols=153 Identities=22% Similarity=0.217 Sum_probs=105.8
Q ss_pred HHHHHHHHHhc-c--CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc-------C
Q 000174 307 YQLDVLEQAKK-K--NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT-------G 376 (1931)
Q Consensus 307 ~Q~eai~~~l~-~--n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~-------~ 376 (1931)
+|.++++.+.+ . ++++++|||||||.+|++++.. ...++++++|+++|+.||.+.++.++ +
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~---------~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~ 71 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH---------GENDTIALYPTNALIEDQTEAIKEFVDVFKPERD 71 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH---------cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCC
Confidence 69999999998 3 3789999999999999998763 12358999999999999999999876 4
Q ss_pred CcEEEEeCCCccc--ccch------------HHHHhh--cCCccEEEEcHHHHHHHHhcccc--------cccceeEEEE
Q 000174 377 YVVGHYCGEMGQD--FWDA------------QRWQRE--FDTKQVLVMTAQILLNILRHSII--------KMEAINLLIL 432 (1931)
Q Consensus 377 l~v~~~~G~~~~~--~~~~------------~~w~~~--~~~~~IlV~Tpq~L~d~L~~~~l--------~l~~i~lLV~ 432 (1931)
..+..++|....+ .+.. ..++.. ...+.|+++||+.|..++.+.+. .+..+++|||
T Consensus 72 ~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~ 151 (357)
T TIGR03158 72 VNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIF 151 (357)
T ss_pred ceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEE
Confidence 5677777763322 1110 001111 24788999999999876654221 2478999999
Q ss_pred eCCCcccCCCc----HH-HHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 433 DECHHAVKKHP----YS-LVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 433 DEaH~~~~~~~----~~-~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
||+|.+..... +. ..+. +.... ...+++++|||||.
T Consensus 152 DE~H~~~~~~~~~~~~~l~~~~-~~~~~--~~~~~~i~lSAT~~ 192 (357)
T TIGR03158 152 DEFHLYDAKQLVGMLFLLAYMQ-LIRFF--ECRRKFVFLSATPD 192 (357)
T ss_pred ecccccCcccchhhhhhhHHHH-HHHhh--hcCCcEEEEecCCC
Confidence 99999874211 11 1222 11111 12378999999986
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-26 Score=285.05 Aligned_cols=437 Identities=16% Similarity=0.185 Sum_probs=259.0
Q ss_pred CCCcHHHHHHHHHHh--c---cCEEEEeCCCchHHHHHHHHHH-HHHHHhh--hcCCCcEEEEEeCChhHHHHHHHHHHH
Q 000174 302 EQARPYQLDVLEQAK--K---KNTIAFLETGAGKTLIAVLLIR-SICNDLQ--RQNKKMLAVFLVPKVPLVYQQAEVIRE 373 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l--~---~n~Il~~~TGsGKTliall~i~-~~l~~~~--~~~~~~~vL~LvPT~~Lv~Q~~~~l~~ 373 (1931)
..+|.||++.+.|+. + -+.|+|++||.|||++.+..+. .+..+.. ..-...+.|||||. .|+--|..++.+
T Consensus 974 a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~k 1052 (1549)
T KOG0392|consen 974 AKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKK 1052 (1549)
T ss_pred HHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHH
Confidence 568999999999963 3 6899999999999999887543 3333310 11234569999996 799999999999
Q ss_pred HcCC-cEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHH
Q 000174 374 QTGY-VVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFY 452 (1931)
Q Consensus 374 ~~~l-~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~ 452 (1931)
++++ +|..+.|.-.. +...+..+++++|+|++|..+.+.+.. +.-..|+|+|+||.|-+++. -.++.+...
T Consensus 1053 f~pfL~v~~yvg~p~~----r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kavk 1124 (1549)
T KOG0392|consen 1053 FFPFLKVLQYVGPPAE----RRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAVK 1124 (1549)
T ss_pred hcchhhhhhhcCChHH----HHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHHH
Confidence 9874 77777876432 334455567899999999999976643 44568999999999999873 222222211
Q ss_pred hhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccc-hhhhHHHH
Q 000174 453 HTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKA-ASLWSLHE 531 (1931)
Q Consensus 453 ~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~-~~~~~l~~ 531 (1931)
. -..-++|.||+||++.+ . .+|..|-..|-+..... ..+.-.++ .+|......-... .....-..
T Consensus 1125 q----L~a~hRLILSGTPIQNn----v----leLWSLFdFLMPGfLGt-EKqFqsrf-~kpI~asRd~K~Sske~EaG~l 1190 (1549)
T KOG0392|consen 1125 Q----LRANHRLILSGTPIQNN----V----LELWSLFDFLMPGFLGT-EKQFQSRF-GKPILASRDPKSSSKEQEAGVL 1190 (1549)
T ss_pred H----HhhcceEEeeCCCcccC----H----HHHHHHHHHhcccccCc-HHHHHHHh-cchhhhhcCcccchhHHHhhHH
Confidence 1 12356899999999622 1 23333333332222111 12222222 1221110000000 00000011
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000174 532 QLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSF 611 (1931)
Q Consensus 532 ~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~ 611 (1931)
.+..+...+.++ +.+|-+.++.++|+.++-+-.|| +|++...--+ ..|
T Consensus 1191 AleaLHKqVLPF-----------------------------~LRRlKedVL~DLPpKIIQDyyC--eLs~lQ~kLY-~df 1238 (1549)
T KOG0392|consen 1191 ALEALHKQVLPF-----------------------------LLRRLKEDVLKDLPPKIIQDYYC--ELSPLQKKLY-RDF 1238 (1549)
T ss_pred HHHHHHHHHHHH-----------------------------HHHHHHHHHHhhCChhhhhheee--ccCHHHHHHH-HHH
Confidence 122222222222 22444555556665554444344 3333221100 001
Q ss_pred HHHh----h----hhhhhhhh-hhHHHH-HHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccc
Q 000174 612 LTAL----Q----NDERANYQ-LDVKFQ-ESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSH 681 (1931)
Q Consensus 612 l~~l----~----~~~~~~~~-~~~~~~-~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~ 681 (1931)
.... + ..+...+. -..-|+ -.|++++|+...-.+.. .|+++..-
T Consensus 1239 ~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~--------------------~hp~la~i------ 1292 (1549)
T KOG0392|consen 1239 VKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTP--------------------VHPDLAAI------ 1292 (1549)
T ss_pred HHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCC--------------------CcchHHHH------
Confidence 1110 0 00000000 000111 24666666532111100 01111000
Q ss_pred cccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCC-------------CCceEEEEEeehhHHHHHHHHHhcCCCCC
Q 000174 682 VVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHT-------------EDFRAIIFVERVVAALVLPKVFAELPSLS 748 (1931)
Q Consensus 682 ~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~-------------~~~k~IIFv~~r~ta~~L~~~L~~~~~l~ 748 (1931)
..+. ..+...+.+-..+||+.+|.++|.+..-. .++|++|||+.+.+++.+.+-|-+- ..+
T Consensus 1293 ----~~~l-~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~-~mp 1366 (1549)
T KOG0392|consen 1293 ----VSHL-AHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKK-YMP 1366 (1549)
T ss_pred ----HHHH-HHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhh-hcC
Confidence 0000 00111222335689999999999876211 4689999999999999999876551 123
Q ss_pred CceeEEEEccCCCccccHHHHHHHHHHhhcC-Cce-EEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCC
Q 000174 749 FVKSASLIGHNNSQEMRTFQMQETIAKFRDG-RVT-LLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGS 826 (1931)
Q Consensus 749 ~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G-~~~-vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs 826 (1931)
.+....+.| +.+..+|++++++|+++ .++ +|++|-|++-|+|+.+++.||.++..|||....|.+.||+|.||
T Consensus 1367 sVtymRLDG-----SVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQ 1441 (1549)
T KOG0392|consen 1367 SVTYMRLDG-----SVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQ 1441 (1549)
T ss_pred ceeEEEecC-----CCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcC
Confidence 455568889 89999999999999988 677 55788999999999999999999999999999999999999999
Q ss_pred cEEE
Q 000174 827 DYIL 830 (1931)
Q Consensus 827 ~~iv 830 (1931)
+-+|
T Consensus 1442 KrvV 1445 (1549)
T KOG0392|consen 1442 KRVV 1445 (1549)
T ss_pred ceee
Confidence 9444
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-25 Score=294.49 Aligned_cols=297 Identities=20% Similarity=0.230 Sum_probs=200.7
Q ss_pred HHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcE----E
Q 000174 306 PYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVV----G 380 (1931)
Q Consensus 306 ~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v----~ 380 (1931)
.+-.+.+..+.. +++|++++||||||.++.+++.+... .+.+++|++||+++|.|.++.+.+.++..+ +
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VG 78 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVG 78 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEE
Confidence 344455555655 88999999999999999999876542 245799999999999999999987665443 3
Q ss_pred EEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCC-cccCCCcHH-HHHHHHHhhcCCC
Q 000174 381 HYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECH-HAVKKHPYS-LVMSEFYHTTSKE 458 (1931)
Q Consensus 381 ~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH-~~~~~~~~~-~im~~~~~~~~~~ 458 (1931)
...+... ..-...+|+|+|+++|++.+.+. ..+.++++|||||+| +..+. .+. ..++.+....+
T Consensus 79 y~vr~~~----------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~-Dl~L~ll~~i~~~lr-- 144 (819)
T TIGR01970 79 YRVRGEN----------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDA-DLGLALALDVQSSLR-- 144 (819)
T ss_pred EEEcccc----------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhcc-chHHHHHHHHHHhcC--
Confidence 3222211 11145789999999999998764 578999999999999 45553 332 22333333222
Q ss_pred CCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcC-CeEEEecchHHHhhhCCCCceeEEEeccchhhhHHHHHHHHHH
Q 000174 459 KRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLD-SVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQME 537 (1931)
Q Consensus 459 ~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~-~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~l~ 537 (1931)
...++++||||... . .+..++. +.+.....+ ..|.+. .|.....
T Consensus 145 ~dlqlIlmSATl~~------------~--~l~~~l~~~~vI~~~gr-------~~pVe~--~y~~~~~------------ 189 (819)
T TIGR01970 145 EDLKILAMSATLDG------------E--RLSSLLPDAPVVESEGR-------SFPVEI--RYLPLRG------------ 189 (819)
T ss_pred CCceEEEEeCCCCH------------H--HHHHHcCCCcEEEecCc-------ceeeee--EEeecch------------
Confidence 23789999999752 0 1223332 111111000 001110 0100000
Q ss_pred HHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 000174 538 VAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQN 617 (1931)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~ 617 (1931)
.
T Consensus 190 ------------------------------------------------------------------~------------- 190 (819)
T TIGR01970 190 ------------------------------------------------------------------D------------- 190 (819)
T ss_pred ------------------------------------------------------------------h-------------
Confidence 0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhhhhhcc
Q 000174 618 DERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAV 697 (1931)
Q Consensus 618 ~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~ 697 (1931)
.++.
T Consensus 191 --------------~~~~-------------------------------------------------------------- 194 (819)
T TIGR01970 191 --------------QRLE-------------------------------------------------------------- 194 (819)
T ss_pred --------------hhHH--------------------------------------------------------------
Confidence 0000
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhh
Q 000174 698 ADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFR 777 (1931)
Q Consensus 698 ~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr 777 (1931)
......+..++.. ...++|||++++..++.+++.|.+... .++.+..+|| ++++.+|.++++.|+
T Consensus 195 -----~~v~~~l~~~l~~----~~g~iLVFlpg~~eI~~l~~~L~~~~~-~~~~v~pLHg-----~L~~~eq~~~~~~~~ 259 (819)
T TIGR01970 195 -----DAVSRAVEHALAS----ETGSILVFLPGQAEIRRVQEQLAERLD-SDVLICPLYG-----ELSLAAQDRAIKPDP 259 (819)
T ss_pred -----HHHHHHHHHHHHh----cCCcEEEEECCHHHHHHHHHHHHhhcC-CCcEEEEecC-----CCCHHHHHHHHhhcc
Confidence 0000111122221 246799999999999999999986211 3688999999 999999999999999
Q ss_pred cCCceEEEEecccccCCCCCCCCEEEEcCCCCC------------------HHHHHHhhccCCCCCCc
Q 000174 778 DGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKT------------------VLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 778 ~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s------------------~~~yiQr~GRa~R~Gs~ 827 (1931)
+|+.+|||||+|+|+|||||+|++||++++|.. -.+|+||+|||||.+..
T Consensus 260 ~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~G 327 (819)
T TIGR01970 260 QGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLEPG 327 (819)
T ss_pred cCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCCCC
Confidence 999999999999999999999999999999853 34689999999997443
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-26 Score=275.58 Aligned_cols=444 Identities=19% Similarity=0.163 Sum_probs=258.9
Q ss_pred CCCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000174 301 EEQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT 375 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~ 375 (1931)
..+|-+||.-.+.|+.- -++|++++||+|||++.+..+..+.+ .+..++-|||||...| ..|.++|++|+
T Consensus 397 ~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq----~g~~gpHLVVvPsSTl-eNWlrEf~kwC 471 (941)
T KOG0389|consen 397 GIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQ----IGNPGPHLVVVPSSTL-ENWLREFAKWC 471 (941)
T ss_pred CCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHH----cCCCCCcEEEecchhH-HHHHHHHHHhC
Confidence 35699999999999742 57899999999999988876654444 3446678999999888 55999999998
Q ss_pred -CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHH-HhcccccccceeEEEEeCCCcccCCCc--HHHHHHHH
Q 000174 376 -GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNI-LRHSIIKMEAINLLILDECHHAVKKHP--YSLVMSEF 451 (1931)
Q Consensus 376 -~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~-L~~~~l~l~~i~lLV~DEaH~~~~~~~--~~~im~~~ 451 (1931)
.++|-.|+|.......-+....+.-...+|+|+||+....- -.+.+++-.+|+++|+||+|.+.+.++ |+..|.
T Consensus 472 Psl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~~LM~-- 549 (941)
T KOG0389|consen 472 PSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYKHLMS-- 549 (941)
T ss_pred CceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHHHhcc--
Confidence 58999999986322111122222223789999999987642 234567778999999999999988543 333332
Q ss_pred HhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhhhHH-H
Q 000174 452 YHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSL-H 530 (1931)
Q Consensus 452 ~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l-~ 530 (1931)
.+.-.+|+||+||.+ +...+|-.|-.++-+.++.. ..+++.......... +.......+ .
T Consensus 550 ------I~An~RlLLTGTPLQ--------NNL~ELiSLL~FvlP~vF~~-~~~dl~~if~~k~~~----d~d~e~~~l~q 610 (941)
T KOG0389|consen 550 ------INANFRLLLTGTPLQ--------NNLKELISLLAFVLPKVFDS-SMEDLDVIFKAKKTS----DGDIENALLSQ 610 (941)
T ss_pred ------ccccceEEeeCCccc--------ccHHHHHHHHHHHhhHhhhc-cchHHHHHHhccCCc----cchhhHHHHHH
Confidence 223568999999985 12234444444444555543 222332221111100 000011111 1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000174 531 EQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQS 610 (1931)
Q Consensus 531 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~ 610 (1931)
++|.+....+.+++. +|.+..+.++|+.+...+.+|..+--+-..|.-+..
T Consensus 611 erIsrAK~im~PFIL-----------------------------RR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~ 661 (941)
T KOG0389|consen 611 ERISRAKTIMKPFIL-----------------------------RRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIE 661 (941)
T ss_pred HHHHHHHHhhhHHHH-----------------------------HHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHH
Confidence 123333333333322 233333344444443333333322222222111111
Q ss_pred HHH----Hhhhh-hhhhhhhh----------HHHHHHHHHHHHHHhhhhh-hhcccccc--------ccccccccccccc
Q 000174 611 FLT----ALQND-ERANYQLD----------VKFQESYLSKVVSLLQCEL-VEGAVSKK--------DAKVVDSENGFVE 666 (1931)
Q Consensus 611 ~l~----~l~~~-~~~~~~~~----------~~~~~~yl~~i~~~l~~~~-~~~~~~~~--------~~~i~~~~~~~~~ 666 (1931)
... ....+ +.....+. -.+...|-.+....+...+ .+..-... .....|.+++..-
T Consensus 662 ~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc 741 (941)
T KOG0389|consen 662 LYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLC 741 (941)
T ss_pred HHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHH
Confidence 110 00000 00000000 0011112111111111000 00000000 0000011110000
Q ss_pred CCccccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCC
Q 000174 667 GGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPS 746 (1931)
Q Consensus 667 ~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~ 746 (1931)
....-+....|.+. ..-.|.|+..|..+|.+. ...+.|++||.+...+.+.|..+|..
T Consensus 742 ~~f~~~~~f~L~d~------------------~~mdSgK~r~L~~LLp~~-k~~G~RVLiFSQFTqmLDILE~~L~~--- 799 (941)
T KOG0389|consen 742 CQFRHLSKFQLKDD------------------LWMDSGKCRKLKELLPKI-KKKGDRVLIFSQFTQMLDILEVVLDT--- 799 (941)
T ss_pred HhcCCCcccccCCc------------------hhhhhhhHhHHHHHHHHH-hhcCCEEEEeeHHHHHHHHHHHHHHh---
Confidence 00000111111111 113478999999999987 45679999999999999999999998
Q ss_pred CCCceeEEEEccCCCccccHHHHHHHHHHhhcCC-ce-EEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCC
Q 000174 747 LSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGR-VT-LLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKP 824 (1931)
Q Consensus 747 l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~-~~-vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~ 824 (1931)
.++....+.| .+....|+.+++.|...+ +. +|++|.+++-|||+..+|+||.||...||-...|.-.||+|.
T Consensus 800 -l~~~ylRLDG-----sTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRv 873 (941)
T KOG0389|consen 800 -LGYKYLRLDG-----STQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRV 873 (941)
T ss_pred -cCceEEeecC-----CccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhh
Confidence 5789999999 888999999999999544 44 899999999999999999999999999999999999999999
Q ss_pred CCc
Q 000174 825 GSD 827 (1931)
Q Consensus 825 Gs~ 827 (1931)
||.
T Consensus 874 GQt 876 (941)
T KOG0389|consen 874 GQT 876 (941)
T ss_pred CCc
Confidence 998
|
|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=282.13 Aligned_cols=120 Identities=20% Similarity=0.220 Sum_probs=104.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCc
Q 000174 702 VTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRV 781 (1931)
Q Consensus 702 ~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~ 781 (1931)
...|...|++.+... ...+.++||||+++..++.|+..|.. .++++..+|| .+.+.++..+..+++.|
T Consensus 410 ~~~K~~al~~~i~~~-~~~~~pvLIf~~t~~~se~l~~~L~~----~gi~~~~L~~-----~~~~~e~~~i~~ag~~g-- 477 (790)
T PRK09200 410 LDEKYKAVIEEVKER-HETGRPVLIGTGSIEQSETFSKLLDE----AGIPHNLLNA-----KNAAKEAQIIAEAGQKG-- 477 (790)
T ss_pred HHHHHHHHHHHHHHH-HhcCCCEEEEeCcHHHHHHHHHHHHH----CCCCEEEecC-----CccHHHHHHHHHcCCCC--
Confidence 356888898888764 34577899999999999999999998 6899999999 88888888888888777
Q ss_pred eEEEEecccccCCCC---CCCC-----EEEEcCCCCCHHHHHHhhccCCCCCCcE--EEEEe
Q 000174 782 TLLVATSVAEEGLDI---RQCN-----VVIRFDLAKTVLAYIQSRGRARKPGSDY--ILMIE 833 (1931)
Q Consensus 782 ~vLVaTdVaeeGlDi---p~~~-----lVI~fD~p~s~~~yiQr~GRa~R~Gs~~--ivlv~ 833 (1931)
+|||||++++||+|| |+|. +||+||+|.+...|+||+|||||.|..+ +.++.
T Consensus 478 ~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is 539 (790)
T PRK09200 478 AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFIS 539 (790)
T ss_pred eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEc
Confidence 799999999999999 7998 9999999999999999999999999884 44444
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.1e-25 Score=297.99 Aligned_cols=356 Identities=18% Similarity=0.266 Sum_probs=211.6
Q ss_pred CCCcHHHHHHHHHHhc------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000174 302 EQARPYQLDVLEQAKK------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT 375 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~ 375 (1931)
..+|+||.+|+..+.+ +++|++++||||||++++..+..++.. +..++||||||+++|+.|+.+.|+.+.
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~----~~~~rVLfLvDR~~L~~Qa~~~F~~~~ 487 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKA----KRFRRILFLVDRSALGEQAEDAFKDTK 487 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhc----CccCeEEEEecHHHHHHHHHHHHHhcc
Confidence 5699999999988753 579999999999999988877766542 345689999999999999999998852
Q ss_pred CC---cEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhc-----ccccccceeEEEEeCCCcccC-------
Q 000174 376 GY---VVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH-----SIIKMEAINLLILDECHHAVK------- 440 (1931)
Q Consensus 376 ~l---~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~-----~~l~l~~i~lLV~DEaH~~~~------- 440 (1931)
.. .+..+++.... ... ..-....|+|+|+|.|.+.+.. ....+..+++||+|||||...
T Consensus 488 ~~~~~~~~~i~~i~~L-----~~~-~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~ 561 (1123)
T PRK11448 488 IEGDQTFASIYDIKGL-----EDK-FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSE 561 (1123)
T ss_pred cccccchhhhhchhhh-----hhh-cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCcccccccc
Confidence 11 11111111100 000 0113579999999999876532 124678899999999999741
Q ss_pred -C----------CcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhh
Q 000174 441 -K----------HPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKH 509 (1931)
Q Consensus 441 -~----------~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~ 509 (1931)
. ..|+.++..| ...+|||||||... ....++..++.+...+.+..-
T Consensus 562 ~~~~~~~~~~~~~~yr~iL~yF--------dA~~IGLTATP~r~---------------t~~~FG~pv~~Ysl~eAI~DG 618 (1123)
T PRK11448 562 GELQFRDQLDYVSKYRRVLDYF--------DAVKIGLTATPALH---------------TTEIFGEPVYTYSYREAVIDG 618 (1123)
T ss_pred chhccchhhhHHHHHHHHHhhc--------CccEEEEecCCccc---------------hhHHhCCeeEEeeHHHHHhcC
Confidence 0 1334444322 14589999999741 123455667777665666533
Q ss_pred CCC----CceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHH
Q 000174 510 VPM----PSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANL 585 (1931)
Q Consensus 510 ~~~----p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l 585 (1931)
... |......+........-.+.+....... ..+. . ..+
T Consensus 619 ~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~---------------------------~~i~----~------~~l 661 (1123)
T PRK11448 619 YLIDHEPPIRIETRLSQEGIHFEKGEEVEVINTQT---------------------------GEID----L------ATL 661 (1123)
T ss_pred CcccCcCCEEEEEEeccccccccccchhhhcchhh---------------------------hhhh----h------ccC
Confidence 222 2221111110000000000000000000 0000 0 000
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccc
Q 000174 586 IQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFV 665 (1931)
Q Consensus 586 ~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~ 665 (1931)
.. .+.+....+..+ + +.....+.
T Consensus 662 ~d---~~~~~~~~~~~~----------------------v---i~~~~~~~----------------------------- 684 (1123)
T PRK11448 662 ED---EVDFEVEDFNRR----------------------V---ITESFNRV----------------------------- 684 (1123)
T ss_pred cH---HHhhhHHHHHHH----------------------H---hhHHHHHH-----------------------------
Confidence 00 000000000000 0 00000000
Q ss_pred cCCccccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcC-
Q 000174 666 EGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAEL- 744 (1931)
Q Consensus 666 ~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~- 744 (1931)
-...|.+.+. .....|+||||.++.+|+.+.+.|.+.
T Consensus 685 ---------------------------------------i~~~l~~~l~---~~~~~KtiIF~~s~~HA~~i~~~L~~~f 722 (1123)
T PRK11448 685 ---------------------------------------VCEELAKYLD---PTGEGKTLIFAATDAHADMVVRLLKEAF 722 (1123)
T ss_pred ---------------------------------------HHHHHHHHHh---ccCCCcEEEEEcCHHHHHHHHHHHHHHH
Confidence 0111222221 123479999999999999999888763
Q ss_pred ----CCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCc-eEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhc
Q 000174 745 ----PSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRV-TLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRG 819 (1931)
Q Consensus 745 ----~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~-~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~G 819 (1931)
+...+..+..++| +++ ++++++++|+++.. .|||+++++.+|+|+|.|++||.++++.|...|+|++|
T Consensus 723 ~~~~~~~~~~~v~~itg-----~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIG 795 (1123)
T PRK11448 723 KKKYGQVEDDAVIKITG-----SID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLG 795 (1123)
T ss_pred HhhcCCcCccceEEEeC-----Ccc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHh
Confidence 2222334567888 543 46789999999887 59999999999999999999999999999999999999
Q ss_pred cCCCC----CCcEEEEEe
Q 000174 820 RARKP----GSDYILMIE 833 (1931)
Q Consensus 820 Ra~R~----Gs~~ivlv~ 833 (1931)
|+.|. |+...+++.
T Consensus 796 RgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 796 RATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred hhccCCccCCCceEEEEe
Confidence 99995 455555543
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=309.41 Aligned_cols=137 Identities=20% Similarity=0.172 Sum_probs=105.9
Q ss_pred hhhhc-CCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHH
Q 000174 294 EAKEK-MPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVI 371 (1931)
Q Consensus 294 ~~l~~-~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l 371 (1931)
+.+++ .|+ +|+++|+++++.+++ +++++.+|||+|||+.+++++..+.. ++.++|||+||++|+.|+++.+
T Consensus 70 ~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~------~g~~aLVl~PTreLa~Qi~~~l 142 (1638)
T PRK14701 70 EFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL------KGKKCYIILPTTLLVKQTVEKI 142 (1638)
T ss_pred HHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh------cCCeEEEEECHHHHHHHHHHHH
Confidence 33444 677 799999999999999 99999999999999966655443321 3468999999999999999999
Q ss_pred HHHc-----CCcEEEEeCCCcccccchHHHHhhcC-CccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 372 REQT-----GYVVGHYCGEMGQDFWDAQRWQREFD-TKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 372 ~~~~-----~l~v~~~~G~~~~~~~~~~~w~~~~~-~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
+.+. ++++..++|+..... ....|..+.. .++|+|+||++|.+.+... ...++++||+||||++++
T Consensus 143 ~~l~~~~~~~v~v~~~~g~~s~~e-~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~ml~ 214 (1638)
T PRK14701 143 ESFCEKANLDVRLVYYHSNLRKKE-KEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDAFLK 214 (1638)
T ss_pred HHHHhhcCCceeEEEEeCCCCHHH-HHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECceeccc
Confidence 9854 456677888876432 2233544444 5899999999999876542 227799999999999975
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.6e-25 Score=277.05 Aligned_cols=115 Identities=19% Similarity=0.168 Sum_probs=98.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCc
Q 000174 702 VTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRV 781 (1931)
Q Consensus 702 ~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~ 781 (1931)
...|...|++++... ...+..+||||+++..++.|++.|.. .++++..||| .+. +|+..+..|+.+..
T Consensus 455 ~~~K~~aL~~~i~~~-~~~~~pvLIft~t~~~se~L~~~L~~----~gi~~~~Lhg-----~~~--~rE~~ii~~ag~~g 522 (656)
T PRK12898 455 AAAKWAAVAARVREL-HAQGRPVLVGTRSVAASERLSALLRE----AGLPHQVLNA-----KQD--AEEAAIVARAGQRG 522 (656)
T ss_pred HHHHHHHHHHHHHHH-HhcCCCEEEEeCcHHHHHHHHHHHHH----CCCCEEEeeC-----CcH--HHHHHHHHHcCCCC
Confidence 346888999988775 22345699999999999999999998 6899999999 654 55566666776667
Q ss_pred eEEEEecccccCCCCC---CCC-----EEEEcCCCCCHHHHHHhhccCCCCCCcE
Q 000174 782 TLLVATSVAEEGLDIR---QCN-----VVIRFDLAKTVLAYIQSRGRARKPGSDY 828 (1931)
Q Consensus 782 ~vLVaTdVaeeGlDip---~~~-----lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ 828 (1931)
.|||||++++||+||+ +|. +||+||+|.+...|+||+|||||.|..+
T Consensus 523 ~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G 577 (656)
T PRK12898 523 RITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPG 577 (656)
T ss_pred cEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCe
Confidence 8999999999999999 666 9999999999999999999999999874
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-25 Score=281.22 Aligned_cols=119 Identities=18% Similarity=0.240 Sum_probs=103.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCc
Q 000174 702 VTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRV 781 (1931)
Q Consensus 702 ~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~ 781 (1931)
...|...+++.+.+. +..+..+||||+++..++.|...|.. .++++..+|| .+.++++..+..+|+.|
T Consensus 406 ~~~K~~ai~~~i~~~-~~~~~pvLIft~s~~~se~ls~~L~~----~gi~~~~L~a-----~~~~~E~~ii~~ag~~g-- 473 (762)
T TIGR03714 406 LPEKLMATLEDVKEY-HETGQPVLLITGSVEMSEIYSELLLR----EGIPHNLLNA-----QNAAKEAQIIAEAGQKG-- 473 (762)
T ss_pred HHHHHHHHHHHHHHH-hhCCCCEEEEECcHHHHHHHHHHHHH----CCCCEEEecC-----CChHHHHHHHHHcCCCC--
Confidence 356889999888765 34577899999999999999999998 6899999999 88888888887777777
Q ss_pred eEEEEecccccCCCCC---------CCCEEEEcCCCCCHHHHHHhhccCCCCCCcE--EEEEe
Q 000174 782 TLLVATSVAEEGLDIR---------QCNVVIRFDLAKTVLAYIQSRGRARKPGSDY--ILMIE 833 (1931)
Q Consensus 782 ~vLVaTdVaeeGlDip---------~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~--ivlv~ 833 (1931)
.|+|||++++||+||+ ++++||+|++|..... +||+|||||.|..+ ++++.
T Consensus 474 ~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is 535 (762)
T TIGR03714 474 AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVS 535 (762)
T ss_pred eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEc
Confidence 6999999999999999 9999999999999877 99999999999874 34444
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.6e-25 Score=289.54 Aligned_cols=297 Identities=21% Similarity=0.237 Sum_probs=197.8
Q ss_pred HHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCC----cEE
Q 000174 306 PYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY----VVG 380 (1931)
Q Consensus 306 ~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l----~v~ 380 (1931)
.+-.+.+..+.+ +++|+.++||||||.++.+++.+... ...+++|++||+++|.|.++.+.+.++. .|+
T Consensus 8 ~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VG 81 (812)
T PRK11664 8 AVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVG 81 (812)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEE
Confidence 344455566655 88999999999999999998765321 2347999999999999999999776544 444
Q ss_pred EEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcc-cCCCcHHHHHHHHHhhcCCCC
Q 000174 381 HYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHA-VKKHPYSLVMSEFYHTTSKEK 459 (1931)
Q Consensus 381 ~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~-~~~~~~~~im~~~~~~~~~~~ 459 (1931)
...++... .-...+|+|+|+++|++++... ..++++++|||||+|.. ....-.-..+..+....+ .
T Consensus 82 y~vr~~~~----------~~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr--~ 148 (812)
T PRK11664 82 YRMRAESK----------VGPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLR--D 148 (812)
T ss_pred EEecCccc----------cCCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCC--c
Confidence 44443221 1135689999999999998864 57899999999999973 332111122223332222 2
Q ss_pred CcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcC-CeEEEecchHHHhhhCCCCceeEEEeccchhhhHHHHHHHHHHH
Q 000174 460 RPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLD-SVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEV 538 (1931)
Q Consensus 460 ~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~-~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~l~~ 538 (1931)
..++++||||+.. . .+..++. ..+.....+ ..|.+ ..|.....
T Consensus 149 ~lqlilmSATl~~------------~--~l~~~~~~~~~I~~~gr-------~~pV~--~~y~~~~~------------- 192 (812)
T PRK11664 149 DLKLLIMSATLDN------------D--RLQQLLPDAPVIVSEGR-------SFPVE--RRYQPLPA------------- 192 (812)
T ss_pred cceEEEEecCCCH------------H--HHHHhcCCCCEEEecCc-------cccce--EEeccCch-------------
Confidence 3789999999752 0 1223232 111111000 00100 00000000
Q ss_pred HHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 000174 539 AVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQND 618 (1931)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~ 618 (1931)
.
T Consensus 193 -----------------------------------------------------------------~-------------- 193 (812)
T PRK11664 193 -----------------------------------------------------------------H-------------- 193 (812)
T ss_pred -----------------------------------------------------------------h--------------
Confidence 0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhhhhhccc
Q 000174 619 ERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVA 698 (1931)
Q Consensus 619 ~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~ 698 (1931)
.++.
T Consensus 194 -------------~~~~--------------------------------------------------------------- 197 (812)
T PRK11664 194 -------------QRFD--------------------------------------------------------------- 197 (812)
T ss_pred -------------hhHH---------------------------------------------------------------
Confidence 0000
Q ss_pred CCCCCHHH-HHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhh
Q 000174 699 DGKVTPKV-QSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFR 777 (1931)
Q Consensus 699 ~~~~s~Kv-~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr 777 (1931)
..+ ..+..++. .....+|||++++..++.+++.|..... .++.+..+|| ++++.+|+++++.|+
T Consensus 198 -----~~v~~~l~~~l~----~~~g~iLVFlpg~~ei~~l~~~L~~~~~-~~~~v~~Lhg-----~l~~~eq~~~~~~~~ 262 (812)
T PRK11664 198 -----EAVARATAELLR----QESGSLLLFLPGVGEIQRVQEQLASRVA-SDVLLCPLYG-----ALSLAEQQKAILPAP 262 (812)
T ss_pred -----HHHHHHHHHHHH----hCCCCEEEEcCCHHHHHHHHHHHHHhcc-CCceEEEeeC-----CCCHHHHHHHhcccc
Confidence 000 01112221 1246899999999999999999986211 3678999999 999999999999999
Q ss_pred cCCceEEEEecccccCCCCCCCCEEEEcCCCCC------------------HHHHHHhhccCCCCCCc
Q 000174 778 DGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKT------------------VLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 778 ~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s------------------~~~yiQr~GRa~R~Gs~ 827 (1931)
+|+.+|||||+|+|+|||||+|++||+++++.. -.+|+||+|||||.+..
T Consensus 263 ~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~G 330 (812)
T PRK11664 263 AGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEPG 330 (812)
T ss_pred CCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCCCCc
Confidence 999999999999999999999999999877653 35899999999997443
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-25 Score=258.92 Aligned_cols=328 Identities=19% Similarity=0.210 Sum_probs=233.6
Q ss_pred hhhhhcCCCCCCcHHHHHHHHHHh-c-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHH
Q 000174 293 SEAKEKMPEEQARPYQLDVLEQAK-K-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEV 370 (1931)
Q Consensus 293 ~~~l~~~~~~~~~~~Q~eai~~~l-~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~ 370 (1931)
..-++..|+..+.|.|.-+++.-+ + .|.+|+.+|+||||++.-+.=...+. +.+++.|||||.++|++|-++.
T Consensus 206 k~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l-----~~g~KmlfLvPLVALANQKy~d 280 (830)
T COG1202 206 KRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLL-----SGGKKMLFLVPLVALANQKYED 280 (830)
T ss_pred HHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHH-----hCCCeEEEEehhHHhhcchHHH
Confidence 356777899999999999999954 4 99999999999999999885333332 2467799999999999999999
Q ss_pred HHHH---cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCC---CcH
Q 000174 371 IREQ---TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKK---HPY 444 (1931)
Q Consensus 371 l~~~---~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~---~~~ 444 (1931)
|+.. +|+.+.+-.|...........-..--..++|+|+||+-+--+|+.| -.+.+++.+|+||.|.+-+. +..
T Consensus 281 F~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHtL~deERG~RL 359 (830)
T COG1202 281 FKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHTLEDEERGPRL 359 (830)
T ss_pred HHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeeeccchhcccch
Confidence 9874 4788877777654322111000111247899999999998778777 67999999999999998752 223
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccch
Q 000174 445 SLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAA 524 (1931)
Q Consensus 445 ~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~ 524 (1931)
.-.+..+....+ ..|.++||||..| + ..|...|++....+.. -|.|-+..+.+....
T Consensus 360 dGLI~RLr~l~~---~AQ~i~LSATVgN------p-------~elA~~l~a~lV~y~~-------RPVplErHlvf~~~e 416 (830)
T COG1202 360 DGLIGRLRYLFP---GAQFIYLSATVGN------P-------EELAKKLGAKLVLYDE-------RPVPLERHLVFARNE 416 (830)
T ss_pred hhHHHHHHHhCC---CCeEEEEEeecCC------h-------HHHHHHhCCeeEeecC-------CCCChhHeeeeecCc
Confidence 333444433333 3789999999764 2 1344556665554421 223333222221100
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHH
Q 000174 525 SLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCA 604 (1931)
Q Consensus 525 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a 604 (1931)
.
T Consensus 417 -------------------------~------------------------------------------------------ 417 (830)
T COG1202 417 -------------------------S------------------------------------------------------ 417 (830)
T ss_pred -------------------------h------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccccccccccc
Q 000174 605 YKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVS 684 (1931)
Q Consensus 605 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s 684 (1931)
T Consensus 418 -------------------------------------------------------------------------------- 417 (830)
T COG1202 418 -------------------------------------------------------------------------------- 417 (830)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCchhhhhhhcccCCCCCHHHHHHHHHHHH-----hcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccC
Q 000174 685 GGEHVDVIIGAAVADGKVTPKVQSLIKILLK-----YQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHN 759 (1931)
Q Consensus 685 ~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~-----~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~ 759 (1931)
.|...+.++.+. ....-..++|||+++|..|..|+.+|.. .|+++..+|+
T Consensus 418 -------------------eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~----kG~~a~pYHa-- 472 (830)
T COG1202 418 -------------------EKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTG----KGLKAAPYHA-- 472 (830)
T ss_pred -------------------HHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhc----CCcccccccC--
Confidence 000000000000 0012246799999999999999999998 7999999999
Q ss_pred CCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEE---EcCCCC-CHHHHHHhhccCCCCCC----cEEEE
Q 000174 760 NSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVI---RFDLAK-TVLAYIQSRGRARKPGS----DYILM 831 (1931)
Q Consensus 760 ~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI---~fD~p~-s~~~yiQr~GRa~R~Gs----~~ivl 831 (1931)
+++..+|+.+-..|.++++.++|+|.+++-|+|+|+-.+|. -...-| |+..|.|..|||||.+- +.++|
T Consensus 473 ---GL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyll 549 (830)
T COG1202 473 ---GLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLL 549 (830)
T ss_pred ---CCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEE
Confidence 99999999999999999999999999999999999877652 244455 99999999999999763 25667
Q ss_pred EecCC
Q 000174 832 IERGN 836 (1931)
Q Consensus 832 v~~~~ 836 (1931)
++++.
T Consensus 550 vepg~ 554 (830)
T COG1202 550 VEPGK 554 (830)
T ss_pred ecCCh
Confidence 77664
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-25 Score=288.24 Aligned_cols=163 Identities=24% Similarity=0.293 Sum_probs=129.6
Q ss_pred hhhcCCCCCCcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH
Q 000174 295 AKEKMPEEQARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR 372 (1931)
Q Consensus 295 ~l~~~~~~~~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~ 372 (1931)
-++..++.++.+.|++++..... +|+||++|||||||+++++.|...+.. .+.++|+|||+++|+.|.+++++
T Consensus 23 i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~-----~~~k~vYivPlkALa~Ek~~~~~ 97 (766)
T COG1204 23 ILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLE-----GGGKVVYIVPLKALAEEKYEEFS 97 (766)
T ss_pred HhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHh-----cCCcEEEEeChHHHHHHHHHHhh
Confidence 34445556899999999988765 899999999999999999998887764 25679999999999999999999
Q ss_pred --HHcCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCC--c-HHHH
Q 000174 373 --EQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKH--P-YSLV 447 (1931)
Q Consensus 373 --~~~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~--~-~~~i 447 (1931)
+.+|++|.+.+|+..... ..+.+++|+|+||+.+...+++....+..+++||+||+|.+.+.. + ...+
T Consensus 98 ~~~~~GirV~~~TgD~~~~~-------~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~i 170 (766)
T COG1204 98 RLEELGIRVGISTGDYDLDD-------ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESI 170 (766)
T ss_pred hHHhcCCEEEEecCCcccch-------hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhH
Confidence 567999999999876432 224789999999999999898877788999999999999998641 2 1222
Q ss_pred HHHHHhhcCCCCCcEEEEEeecCCC
Q 000174 448 MSEFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 448 m~~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
+...... ....|++|||||..|
T Consensus 171 v~r~~~~---~~~~rivgLSATlpN 192 (766)
T COG1204 171 VARMRRL---NELIRIVGLSATLPN 192 (766)
T ss_pred HHHHHhh---CcceEEEEEeeecCC
Confidence 2222222 122799999999764
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=297.45 Aligned_cols=135 Identities=19% Similarity=0.192 Sum_probs=102.8
Q ss_pred hhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHH
Q 000174 296 KEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQ 374 (1931)
Q Consensus 296 l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~ 374 (1931)
+.+....+|+++|+.+++.++. +++++.+|||+|||. |++++...+.. .+.+++||+||++|+.|++++++.+
T Consensus 71 f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-----~g~~vLIL~PTreLa~Qi~~~l~~l 144 (1171)
T TIGR01054 71 FKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-----KGKRCYIILPTTLLVIQVAEKISSL 144 (1171)
T ss_pred HHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-----cCCeEEEEeCHHHHHHHHHHHHHHH
Confidence 3344556899999999999998 999999999999997 55555443332 2568999999999999999999986
Q ss_pred c---CCcE---EEEeCCCcccccchHHHHhhcC-CccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 375 T---GYVV---GHYCGEMGQDFWDAQRWQREFD-TKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 375 ~---~l~v---~~~~G~~~~~~~~~~~w~~~~~-~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
. ++.+ +.++|+..... ....|..... +++|||+||++|.+.+.. +.. +++++|+||||++++
T Consensus 145 ~~~~~i~~~~i~~~~Gg~~~~e-~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 145 AEKAGVGTVNIGAYHSRLPTKE-KKEFMERIENGDFDILITTTMFLSKNYDE--LGP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred HHhcCCceeeeeeecCCCCHHH-HHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcC-CCCEEEEeChHhhhh
Confidence 5 4443 35778775432 2233444433 589999999999988765 222 899999999999987
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-25 Score=254.09 Aligned_cols=103 Identities=21% Similarity=0.299 Sum_probs=95.7
Q ss_pred CCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCC
Q 000174 719 TEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQ 798 (1931)
Q Consensus 719 ~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~ 798 (1931)
..-.++||||.++..++-|.+++.+... ..+.++++|| +....+|++.|+.|+++.+++||||||++|||||..
T Consensus 503 h~mdkaiifcrtk~dcDnLer~~~qkgg-~~~scvclhg-----DrkP~Erk~nle~Fkk~dvkflictdvaargldi~g 576 (725)
T KOG0349|consen 503 HAMDKAIIFCRTKQDCDNLERMMNQKGG-KHYSCVCLHG-----DRKPDERKANLESFKKFDVKFLICTDVAARGLDITG 576 (725)
T ss_pred hccCceEEEEeccccchHHHHHHHHcCC-ccceeEEEec-----CCChhHHHHHHHhhhhcCeEEEEEehhhhccccccC
Confidence 3467999999999999999999988544 6799999999 999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 799 CNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 799 ~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
+-.+||.-+|..-..|+||+||.||+..-
T Consensus 577 ~p~~invtlpd~k~nyvhrigrvgraerm 605 (725)
T KOG0349|consen 577 LPFMINVTLPDDKTNYVHRIGRVGRAERM 605 (725)
T ss_pred CceEEEEecCcccchhhhhhhccchhhhc
Confidence 99999999999999999999999987654
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=259.32 Aligned_cols=158 Identities=20% Similarity=0.233 Sum_probs=123.8
Q ss_pred hhhcCCCCCCcHHHHHHHHHHhc-------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHH
Q 000174 295 AKEKMPEEQARPYQLDVLEQAKK-------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQ 367 (1931)
Q Consensus 295 ~l~~~~~~~~~~~Q~eai~~~l~-------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~ 367 (1931)
.+-..-.++||..|+.++..+.. -|-+++++.|||||+++++.+...+. .+..+.++|||--||.|.
T Consensus 254 ~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~------~G~Q~ALMAPTEILA~QH 327 (677)
T COG1200 254 KFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE------AGYQAALMAPTEILAEQH 327 (677)
T ss_pred HHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH------cCCeeEEeccHHHHHHHH
Confidence 33334457899999999999876 35699999999999999999888776 367899999999999999
Q ss_pred HHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcC-CccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCc
Q 000174 368 AEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFD-TKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHP 443 (1931)
Q Consensus 368 ~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~-~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~ 443 (1931)
++.+.+++ +++|..++|.+.... +++....+.. ..+|||+|.-.+. ..+.+.++.|+|+||=||..-.
T Consensus 328 ~~~~~~~l~~~~i~V~lLtG~~kgk~-r~~~l~~l~~G~~~ivVGTHALiQ-----d~V~F~~LgLVIiDEQHRFGV~-- 399 (677)
T COG1200 328 YESLRKWLEPLGIRVALLTGSLKGKA-RKEILEQLASGEIDIVVGTHALIQ-----DKVEFHNLGLVIIDEQHRFGVH-- 399 (677)
T ss_pred HHHHHHHhhhcCCeEEEeecccchhH-HHHHHHHHhCCCCCEEEEcchhhh-----cceeecceeEEEEeccccccHH--
Confidence 99999986 789999999987654 2333333444 5999999998776 4467899999999999999642
Q ss_pred HHHHHHHHHhhcCCCC-CcEEEEEeecCCC
Q 000174 444 YSLVMSEFYHTTSKEK-RPSVFGMTASPVN 472 (1931)
Q Consensus 444 ~~~im~~~~~~~~~~~-~p~iLgLTATP~~ 472 (1931)
+- ..+.. +.. .|++|.|||||+.
T Consensus 400 --QR-~~L~~---KG~~~Ph~LvMTATPIP 423 (677)
T COG1200 400 --QR-LALRE---KGEQNPHVLVMTATPIP 423 (677)
T ss_pred --HH-HHHHH---hCCCCCcEEEEeCCCch
Confidence 11 11111 223 5999999999994
|
|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=264.75 Aligned_cols=449 Identities=16% Similarity=0.128 Sum_probs=248.5
Q ss_pred CCCCCCcHHHHHHHHHHhc-----------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcC-CCcEEEEEeCChhHHHH
Q 000174 299 MPEEQARPYQLDVLEQAKK-----------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQN-KKMLAVFLVPKVPLVYQ 366 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~-----------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~-~~~~vL~LvPT~~Lv~Q 366 (1931)
.-...++|+|++++..+.+ ..+|++.++|+|||+..+..|..++.+.+..+ --.+.|||+|. .|+.-
T Consensus 234 ~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~n 312 (776)
T KOG0390|consen 234 LLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNN 312 (776)
T ss_pred cHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHH
Confidence 4456799999999999743 35899999999999999999998888642110 11679999995 79999
Q ss_pred HHHHHHHHcC---CcEEEEeCCCcccccchHHHHhhc---CCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 367 QAEVIREQTG---YVVGHYCGEMGQDFWDAQRWQREF---DTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 367 ~~~~l~~~~~---l~v~~~~G~~~~~~~~~~~w~~~~---~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
|.++|.+|.+ +....++|.....-+....|.... -..-|++.+++.+.+.... +....+++||+||+|+.++
T Consensus 313 WkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN 390 (776)
T KOG0390|consen 313 WKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKN 390 (776)
T ss_pred HHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccc
Confidence 9999999986 345556665543111222333221 2567899999999876655 6788999999999999998
Q ss_pred CCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcC---CeEEEecchHHHhhhCCCCceeE
Q 000174 441 KHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLD---SVVCTIKDRKELEKHVPMPSEVV 517 (1931)
Q Consensus 441 ~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~---~~i~t~~~~~~l~~~~~~p~e~~ 517 (1931)
.. ..++.....-..|++++||+||.+. .+.+.-++++ +.+.. ......+....|....
T Consensus 391 ~~------s~~~kaL~~l~t~rRVLLSGTp~QN-----------dl~EyFnlL~fvrP~~Lg--s~~sf~k~~~~~i~~~ 451 (776)
T KOG0390|consen 391 SD------SLTLKALSSLKTPRRVLLTGTPIQN-----------DLKEYFNLLDFVRPGFLG--SISSFKKKFEIPILRG 451 (776)
T ss_pred hh------hHHHHHHHhcCCCceEEeeCCcccc-----------cHHHHHHHHhhcChhhcc--chHHHHHHhhcccccc
Confidence 43 2333333344569999999999962 2223333332 21111 1112222222222111
Q ss_pred EEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhccc-ccccchhhHHHHHHHHHHHHHH
Q 000174 518 VEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVS-ERTESDGAANLIQKLRAINYAL 596 (1931)
Q Consensus 518 ~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-~r~~~~~~~~l~~~~~~~~~~l 596 (1931)
..-+.........+.+..+......++. ++.. ..+ ...++..+... --.....-..+...+.... ..
T Consensus 452 ~~~~~s~e~~~~~~rl~eL~~~t~~fi~---rrt~-~il-------~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~ 519 (776)
T KOG0390|consen 452 RDADASEEDREREERLQELRELTNKFIL---RRTG-DIL-------LKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KM 519 (776)
T ss_pred cCCCcchhhhhhHHHHHHHHHHHHhhee---eccc-chh-------hhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hh
Confidence 1111111100111222222222211111 0000 000 00000000000 0000000001111111100 00
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCC-ccccccc
Q 000174 597 GELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGG-TNEIEEG 675 (1931)
Q Consensus 597 ~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~l~~~ 675 (1931)
.. ......-...++.++|..-.....+.. ........ ...+.+.
T Consensus 520 ~~------------------------~~~~~l~~~~~L~k~cnhP~L~~~~~~-----------~~~e~~~~~~~~~~~~ 564 (776)
T KOG0390|consen 520 RT------------------------LKGYALELITKLKKLCNHPSLLLLCEK-----------TEKEKAFKNPALLLDP 564 (776)
T ss_pred hh------------------------hhcchhhHHHHHHHHhcCHHhhccccc-----------ccccccccChHhhhcc
Confidence 00 000011122445554442111100000 00000000 0000000
Q ss_pred cccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEE
Q 000174 676 ELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASL 755 (1931)
Q Consensus 676 ~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l 755 (1931)
. .+......+..+.|+..|+.+|...+.....++.+-.+.+.+.+.+..+.+- .|+.+..+
T Consensus 565 ~---------------~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~----~g~~~~rL 625 (776)
T KOG0390|consen 565 G---------------KLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRW----RGYEVLRL 625 (776)
T ss_pred c---------------ccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhh----cCceEEEE
Confidence 0 0011122334578999999998665433444555555566666666666554 68999999
Q ss_pred EccCCCccccHHHHHHHHHHhhcCCc---eEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEE--
Q 000174 756 IGHNNSQEMRTFQMQETIAKFRDGRV---TLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYIL-- 830 (1931)
Q Consensus 756 ~G~~~~~~~~~~~R~~~l~~Fr~G~~---~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~iv-- 830 (1931)
+| .|+..+|+.+++.|++... -+|.+|-++++||++-+++.||.||++|||..-.|+++||+|.||+..+
T Consensus 626 dG-----~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~i 700 (776)
T KOG0390|consen 626 DG-----KTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYI 700 (776)
T ss_pred cC-----CCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEE
Confidence 99 9999999999999995443 3778889999999999999999999999999999999999999999333
Q ss_pred --EEecCChhHH
Q 000174 831 --MIERGNLSHA 840 (1931)
Q Consensus 831 --lv~~~~~~~~ 840 (1931)
++.+|..+..
T Consensus 701 YrLlatGtiEEk 712 (776)
T KOG0390|consen 701 YRLLATGTIEEK 712 (776)
T ss_pred EEeecCCCchHH
Confidence 3355655443
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-24 Score=271.84 Aligned_cols=121 Identities=17% Similarity=0.183 Sum_probs=106.3
Q ss_pred CHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCce
Q 000174 703 TPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVT 782 (1931)
Q Consensus 703 s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~ 782 (1931)
..|...+++.+.+. +..+..+||||+++..++.|...|.+ .+++...+|| . +.+|+..+.+|+.+...
T Consensus 388 ~~k~~ai~~~i~~~-~~~grpvLV~t~si~~se~ls~~L~~----~gi~~~~Lna-----~--q~~rEa~ii~~ag~~g~ 455 (745)
T TIGR00963 388 EEKWKAVVDEIKER-HAKGQPVLVGTTSVEKSELLSNLLKE----RGIPHNVLNA-----K--NHEREAEIIAQAGRKGA 455 (745)
T ss_pred HHHHHHHHHHHHHH-HhcCCCEEEEeCcHHHHHHHHHHHHH----cCCCeEEeeC-----C--hHHHHHHHHHhcCCCce
Confidence 45888888877654 45678899999999999999999998 6899999999 5 77999999999999999
Q ss_pred EEEEecccccCCCCCC-------CCEEEEcCCCCCHHHHHHhhccCCCCCCc--EEEEEecC
Q 000174 783 LLVATSVAEEGLDIRQ-------CNVVIRFDLAKTVLAYIQSRGRARKPGSD--YILMIERG 835 (1931)
Q Consensus 783 vLVaTdVaeeGlDip~-------~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivlv~~~ 835 (1931)
|+|||++|+||+||+. .-+||++++|.|...|.||+|||||.|.. ..+++..+
T Consensus 456 VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~e 517 (745)
T TIGR00963 456 VTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLE 517 (745)
T ss_pred EEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEecc
Confidence 9999999999999999 55999999999999999999999999987 34454433
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-23 Score=272.83 Aligned_cols=347 Identities=18% Similarity=0.218 Sum_probs=238.8
Q ss_pred hhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHH
Q 000174 293 SEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVI 371 (1931)
Q Consensus 293 ~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l 371 (1931)
..++.+.+...|+.||.+|+..+.+ +|+||..+||||||.+|++||.+.+.+ .+..++|+|-||++|++.|.+.|
T Consensus 60 ~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~----~~~a~AL~lYPtnALa~DQ~~rl 135 (851)
T COG1205 60 KSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLR----DPSARALLLYPTNALANDQAERL 135 (851)
T ss_pred HHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhh----CcCccEEEEechhhhHhhHHHHH
Confidence 3567777888899999999999999 899999999999999999999988774 34558999999999999999999
Q ss_pred HHHc---C--CcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcc----cccccceeEEEEeCCCcccCC-
Q 000174 372 REQT---G--YVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS----IIKMEAINLLILDECHHAVKK- 441 (1931)
Q Consensus 372 ~~~~---~--l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~----~l~l~~i~lLV~DEaH~~~~~- 441 (1931)
+++. + +.+..++|+..... ...+ ....++||++||.+|.-++-+. .+.+.++++||+||+|-..+-
T Consensus 136 ~~~~~~~~~~v~~~~y~Gdt~~~~--r~~~--~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~ 211 (851)
T COG1205 136 RELISDLPGKVTFGRYTGDTPPEE--RRAI--IRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQ 211 (851)
T ss_pred HHHHHhCCCcceeeeecCCCChHH--HHHH--HhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccc
Confidence 9865 4 77888999876422 1111 2368999999999998754332 235678999999999998862
Q ss_pred -CcHHHHHHHHHhhcCC-CCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEE
Q 000174 442 -HPYSLVMSEFYHTTSK-EKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVE 519 (1931)
Q Consensus 442 -~~~~~im~~~~~~~~~-~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~ 519 (1931)
.-.+.+++.+...+.. ...|+++..|||..+.+. ..+.+++....... -....+.....++.
T Consensus 212 GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e------------~~~~l~~~~f~~~v----~~~g~~~~~~~~~~ 275 (851)
T COG1205 212 GSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGE------------FAEELFGRDFEVPV----DEDGSPRGLRYFVR 275 (851)
T ss_pred hhHHHHHHHHHHHHHhccCCCceEEEEeccccChHH------------HHHHhcCCcceeec----cCCCCCCCceEEEE
Confidence 2345556666555432 345999999999775221 12222221111100 00122223333333
Q ss_pred eccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHH
Q 000174 520 YDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGEL 599 (1931)
Q Consensus 520 y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~l 599 (1931)
+.+........
T Consensus 276 ~~p~~~~~~~~--------------------------------------------------------------------- 286 (851)
T COG1205 276 REPPIRELAES--------------------------------------------------------------------- 286 (851)
T ss_pred eCCcchhhhhh---------------------------------------------------------------------
Confidence 33211000000
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccc
Q 000174 600 GQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLD 679 (1931)
Q Consensus 600 g~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~ 679 (1931)
T Consensus 287 -------------------------------------------------------------------------------- 286 (851)
T COG1205 287 -------------------------------------------------------------------------------- 286 (851)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHH----HHHhcCCCCCCceeEEE
Q 000174 680 SHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLP----KVFAELPSLSFVKSASL 755 (1931)
Q Consensus 680 ~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~----~~L~~~~~l~~~~~~~l 755 (1931)
....+...+-.+... ....+.++|+|+.++..+..++ ..+......-...+...
T Consensus 287 ---------------------~r~s~~~~~~~~~~~-~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~ 344 (851)
T COG1205 287 ---------------------IRRSALAELATLAAL-LVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTY 344 (851)
T ss_pred ---------------------cccchHHHHHHHHHH-HHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeec
Confidence 000000000001100 1234789999999999999996 23322210012446666
Q ss_pred EccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCC-CHHHHHHhhccCCCCCCc-EEEEEe
Q 000174 756 IGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAK-TVLAYIQSRGRARKPGSD-YILMIE 833 (1931)
Q Consensus 756 ~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~-s~~~yiQr~GRa~R~Gs~-~ivlv~ 833 (1931)
+| ++...+|.++...|+.|+..++|+|++++-||||.+++.||.+..|. +..++.||.|||||.++. .++++.
T Consensus 345 ~~-----~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~ 419 (851)
T COG1205 345 RA-----GLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVL 419 (851)
T ss_pred cc-----cCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEe
Confidence 77 89999999999999999999999999999999999999999999999 999999999999999965 444555
Q ss_pred cCChhH
Q 000174 834 RGNLSH 839 (1931)
Q Consensus 834 ~~~~~~ 839 (1931)
..+.-+
T Consensus 420 ~~~~~d 425 (851)
T COG1205 420 RSDPLD 425 (851)
T ss_pred CCCccc
Confidence 444433
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.3e-23 Score=263.00 Aligned_cols=413 Identities=18% Similarity=0.194 Sum_probs=288.1
Q ss_pred CCCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000174 301 EEQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT 375 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~ 375 (1931)
...+.+-|..+++.+.. ...++.+.||||||.+|+-+|...+.+ ++.+|||||.+.|..|..+.|+..+
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~------GkqvLvLVPEI~Ltpq~~~rf~~rF 269 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ------GKQVLVLVPEIALTPQLLARFKARF 269 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc------CCEEEEEeccccchHHHHHHHHHHh
Confidence 35789999999999866 457999999999999999999988873 5789999999999999999999999
Q ss_pred CCcEEEEeCCCcccccchHHHHhhc-CCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC---CCcH--HHHHH
Q 000174 376 GYVVGHYCGEMGQDFWDAQRWQREF-DTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK---KHPY--SLVMS 449 (1931)
Q Consensus 376 ~l~v~~~~G~~~~~~~~~~~w~~~~-~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~---~~~~--~~im~ 449 (1931)
+.++.++|++.+... +...|.+.. ...+|||+|...++ .++.++++||+||-|...- +.++ +..+.
T Consensus 270 g~~v~vlHS~Ls~~e-r~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA 341 (730)
T COG1198 270 GAKVAVLHSGLSPGE-RYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVA 341 (730)
T ss_pred CCChhhhcccCChHH-HHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHHHH
Confidence 999999999987543 678899987 48999999999997 7899999999999998751 1111 22222
Q ss_pred HHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCC---eEE--EecchHHHhhhCCCCceeEEEeccch
Q 000174 450 EFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDS---VVC--TIKDRKELEKHVPMPSEVVVEYDKAA 524 (1931)
Q Consensus 450 ~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~---~i~--t~~~~~~l~~~~~~p~e~~~~y~~~~ 524 (1931)
.+.. ......+++-||||. ||+.... ... ...++.. ....|.-.++......
T Consensus 342 ~~Ra---~~~~~pvvLgSATPS-----------------LES~~~~~~g~y~~~~L~~R~~---~a~~p~v~iiDmr~e~ 398 (730)
T COG1198 342 VLRA---KKENAPVVLGSATPS-----------------LESYANAESGKYKLLRLTNRAG---RARLPRVEIIDMRKEP 398 (730)
T ss_pred HHHH---HHhCCCEEEecCCCC-----------------HHHHHhhhcCceEEEEcccccc---ccCCCcceEEeccccc
Confidence 2221 122345777799996 3332221 111 1122211 2234555555543321
Q ss_pred ------hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHH
Q 000174 525 ------SLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGE 598 (1931)
Q Consensus 525 ------~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~ 598 (1931)
....+.+.|++....-++.+...+++....++.|++||....|+++.....-+... -.-
T Consensus 399 ~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~---------------~~L 463 (730)
T COG1198 399 LETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKAT---------------GQL 463 (730)
T ss_pred cccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCC---------------Cee
Confidence 23456666766666666677788899999899999988877776654322111100 000
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccccc
Q 000174 599 LGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELL 678 (1931)
Q Consensus 599 lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~ 678 (1931)
.++||.+. ...+
T Consensus 464 ~CH~Cg~~--------------------------------------------------------------------~~~p 475 (730)
T COG1198 464 RCHYCGYQ--------------------------------------------------------------------EPIP 475 (730)
T ss_pred EeCCCCCC--------------------------------------------------------------------CCCC
Confidence 01111100 0000
Q ss_pred ccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEcc
Q 000174 679 DSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGH 758 (1931)
Q Consensus 679 ~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~ 758 (1931)
. . -..-+...|+++- ..++.+.+.|..+ +++.++..+.+.
T Consensus 476 ~-----------------------------------~-Cp~Cgs~~L~~~G--~GterieeeL~~~--FP~~rv~r~d~D 515 (730)
T COG1198 476 Q-----------------------------------S-CPECGSEHLRAVG--PGTERIEEELKRL--FPGARIIRIDSD 515 (730)
T ss_pred C-----------------------------------C-CCCCCCCeeEEec--ccHHHHHHHHHHH--CCCCcEEEEccc
Confidence 0 0 0111223444443 3455566666553 367888888882
Q ss_pred CCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCC------------CHHHHHHhhccCCCCCC
Q 000174 759 NNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAK------------TVLAYIQSRGRARKPGS 826 (1931)
Q Consensus 759 ~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~------------s~~~yiQr~GRa~R~Gs 826 (1931)
.......-+..+..|..|+.+|||.|++++.|+|+|++++|...|... +...++|-.|||||.+.
T Consensus 516 ---tt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~ 592 (730)
T COG1198 516 ---TTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGK 592 (730)
T ss_pred ---cccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCC
Confidence 123344567889999999999999999999999999999986544332 34457899999999999
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccC
Q 000174 827 DYILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVD 876 (1931)
Q Consensus 827 ~~ivlv~~~~~~~~~~l~~~~~~e~~l~~~~i~r~~l~~~~~~~~~~~~~ 876 (1931)
.+.+++++.+++|..+.......++.+.++++..+....++|+.++..+.
T Consensus 593 ~G~VvIQT~~P~hp~i~~~~~~dy~~F~~~El~~Rk~~~~PPf~~l~~v~ 642 (730)
T COG1198 593 PGEVVIQTYNPDHPAIQALKRGDYEAFYEQELAERKELGLPPFSRLAAVI 642 (730)
T ss_pred CCeEEEEeCCCCcHHHHHHHhcCHHHHHHHHHHHHHhcCCCChhhheeeE
Confidence 99999999999999988888888889988888888888899888877553
|
|
| >PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.2e-25 Score=229.26 Aligned_cols=124 Identities=37% Similarity=0.548 Sum_probs=99.5
Q ss_pred CHHHHHHHhcCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHHHHHHHHHcCchhhhc
Q 000174 1605 DRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLR 1684 (1931)
Q Consensus 1605 ~~~LL~~AlTH~S~~~~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~La~~a~~~gl~~~l~ 1684 (1931)
|+.||.+||||+||.+...++|||||||||+||+++|++|||+++|. ++|.|+.+|+.+|++++|+.+|.++||+++|+
T Consensus 1 ~~~Ll~~alTH~S~~~~~~~~nerLefLGd~vL~~~vs~~l~~~~~~-~~g~l~~~~~~lv~~~~La~~a~~lgL~~~i~ 79 (128)
T PF14622_consen 1 DDELLLQALTHKSYAHERKPNNERLEFLGDAVLGLVVSEYLFQRPPA-DEGELTRLRSNLVSNETLAEIAKQLGLDKLIR 79 (128)
T ss_dssp SHHHHHHHTB-HHHHHHTCB-SHHHHHHHHHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHSHHHHHHHHHHTTCGGC-B
T ss_pred CHHHHHHHhcCccccccccCccHHHHHHHHHHHHHHHHHHHHhCcCc-cchHHHHHHHHHhChHHHHHHHHHCCHHHHHH
Confidence 68899999999999755558999999999999999999999999555 89999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCceeEEeeeccCC
Q 000174 1685 HGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLL 1754 (1931)
Q Consensus 1685 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~~~v~~~~~~~l 1754 (1931)
.+.+... ......+|+++|+|||+|||||+|+|++. +.+|+...+
T Consensus 80 ~~~~~~~-----------------------~~~~~~~~vlad~feAliGAiyld~G~~~--a~~~i~~~i 124 (128)
T PF14622_consen 80 WGPGEEK-----------------------SGGSGSDKVLADVFEALIGAIYLDSGFEA--ARKFIQKLI 124 (128)
T ss_dssp --HHHHH-----------------------TTGGG-HHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHH
T ss_pred hCccHhh-----------------------cCCCCCccHHHhHHHHHHHHHHHHcCHHH--HHHHHHHHh
Confidence 8554321 12345689999999999999999999874 445555443
|
|
| >PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.8e-24 Score=203.92 Aligned_cols=85 Identities=44% Similarity=0.838 Sum_probs=64.5
Q ss_pred hHHHHHHHhhcCCCCCCCccCceEEEEecCCCCCCceEEEEEEcCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHHHHcC
Q 000174 897 AVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFEKLEGPVCSSMRLAQQAVCLAACKKLHEMG 976 (1931)
Q Consensus 897 Ai~ll~~yC~~Lp~d~~~~~~P~~~~~~~~~~~~~~~~~~~v~LP~~~p~~~~~g~~~~sk~~Akr~AAf~Ac~~L~~~G 976 (1931)
|+++|||||++||+|.|+.++|.|.++..+ ..|+|+|+||.++|++.++|++|+||++|||+|||+||++||++|
T Consensus 1 Ai~lL~~yC~~Lp~d~~~~~~P~~~~~~~~-----~~~~c~v~LP~~~pi~~i~g~~~~sk~~AK~sAAf~Ac~~L~~~g 75 (90)
T PF03368_consen 1 AISLLNRYCSTLPSDSFTNLKPEFEIEKIG-----SGFICTVILPINSPIRSIEGPPMRSKKLAKRSAAFEACKKLHEAG 75 (90)
T ss_dssp HHHHHHHHHTTSSS-TT--SS-EEEEEE-------G-EEEEEE--TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHhcCCCCCCccCCceEEEEEcC-----CcEEEEEECCCCCCCCeEEccccccHHHHHHHHHHHHHHHHHHcC
Confidence 799999999999999999999999998876 589999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCC
Q 000174 977 AFTDMLLPDK 986 (1931)
Q Consensus 977 ~ldd~L~P~~ 986 (1931)
+|||||+|..
T Consensus 76 ~ldd~L~P~~ 85 (90)
T PF03368_consen 76 ELDDHLLPIS 85 (90)
T ss_dssp S-TTTS--HH
T ss_pred CCccccCCCC
Confidence 9999999964
|
This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A. |
| >PRK12371 ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.5e-24 Score=240.94 Aligned_cols=133 Identities=31% Similarity=0.394 Sum_probs=113.5
Q ss_pred HHHhhhcCCCCChhHHH-HHhccccCCC--CCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHHHH
Q 000174 1372 IQLKDKINYPVPASKIL-EALTAASCQE--TFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQ 1448 (1931)
Q Consensus 1372 ~~l~~~l~~~~~~~~ll-~AlT~~s~~~--~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L~~ 1448 (1931)
.+|++.+||.|.+..+| +||||+|+.. ..||||||||||+||+++++.+||.+||+++||.||.+|+.+|||.+|+.
T Consensus 13 ~~le~~lgy~F~~~~Ll~~AlTH~S~~~~~~~~~eRLEFLGDavL~l~vs~~Lf~~~p~~~eG~Lt~~rs~lV~n~~La~ 92 (235)
T PRK12371 13 SILEERTGHRFANKERLERALTHSSARASKQGNYERLEFLGDRVLGLCVAEMLFEAFPDASEGELSVRLNQLVNAETCAA 92 (235)
T ss_pred HHHHHHHCCCCCCHHHHHHHHcCcCcccCCccchHhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhChHHHHH
Confidence 46788899999776655 9999999865 46999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCccceeccccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCCCCcc
Q 000174 1449 YALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSSYR 1528 (1931)
Q Consensus 1449 ~a~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1528 (1931)
+|.++||++||+..+ +... . . .
T Consensus 93 ia~~lgL~~~i~~~~---------~~~~---------------------------------------~--------~--~ 114 (235)
T PRK12371 93 IADEIGLHDLIRTGS---------DVKK---------------------------------------L--------T--G 114 (235)
T ss_pred HHHHCCcHHHhccCc---------chhh---------------------------------------c--------C--C
Confidence 999999999998643 0000 0 0 0
Q ss_pred ccccchhhhHHHHHhhheeeccCHHHHHHHHhHh
Q 000174 1529 VLSSKTLADVVEALIGVYYVEGGKDAANHLMKWI 1562 (1931)
Q Consensus 1529 ~~~~K~lADvvEALiGA~~l~~G~~~a~~~~~~l 1562 (1931)
...+|.+||+|||||||+|+|+|.+.|..|+..+
T Consensus 115 ~~~~~ilad~~EAliGAiylD~G~~~a~~~i~~~ 148 (235)
T PRK12371 115 KRLLNVRADVVEALIAAIYLDGGLEAARPFIQRY 148 (235)
T ss_pred cccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1135899999999999999999999999998554
|
|
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-23 Score=258.89 Aligned_cols=422 Identities=17% Similarity=0.146 Sum_probs=261.1
Q ss_pred CCCCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHH
Q 000174 300 PEEQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQ 374 (1931)
Q Consensus 300 ~~~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~ 374 (1931)
..-++++||...++|+.. -|.|++++||.|||++.+.+|.++++.. +-.++-+||||+..|++ |..+|..|
T Consensus 391 ~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K---~~~GP~LvivPlstL~N-W~~Ef~kW 466 (1157)
T KOG0386|consen 391 QGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHK---QMQGPFLIIVPLSTLVN-WSSEFPKW 466 (1157)
T ss_pred cCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHc---ccCCCeEEeccccccCC-chhhcccc
Confidence 345899999999999876 4689999999999999999998887753 33456899999999987 99999998
Q ss_pred c-CCcEEEEeCCCcccccchHHHHh-hcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHH
Q 000174 375 T-GYVVGHYCGEMGQDFWDAQRWQR-EFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFY 452 (1931)
Q Consensus 375 ~-~l~v~~~~G~~~~~~~~~~~w~~-~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~ 452 (1931)
. .+..+.+.|.... ++..... .....+|+++|++-+.. ....+.--+|.++||||.|+|.+.+ .++-..+.
T Consensus 467 aPSv~~i~YkGtp~~---R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa~--~KLt~~L~ 539 (1157)
T KOG0386|consen 467 APSVQKIQYKGTPQQ---RSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNAI--CKLTDTLN 539 (1157)
T ss_pred ccceeeeeeeCCHHH---HhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccchh--hHHHHHhh
Confidence 6 4667777775432 2222222 12588999999998875 3444566789999999999998743 22222221
Q ss_pred hhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEE---EeccchhhhHH
Q 000174 453 HTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVV---EYDKAASLWSL 529 (1931)
Q Consensus 453 ~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~---~y~~~~~~~~l 529 (1931)
. .-..+++|+||+||.+.+ ..++..|-+++-..|+. ....+..+...|....- ..... .-
T Consensus 540 t---~y~~q~RLLLTGTPLQN~--------LpELWaLLNFlLP~IFn--S~~~FeqWFN~PFantGek~eLteE----Et 602 (1157)
T KOG0386|consen 540 T---HYRAQRRLLLTGTPLQNN--------LPELWALLNFLLPNIFN--SCKAFEQWFNQPFANTGEKVELTEE----ET 602 (1157)
T ss_pred c---cccchhhhhhcCChhhhc--------cHHHHHHHHHhccchhh--hHhHHHHHhhhhhhhcCCcccccch----HH
Confidence 1 112378899999998621 12333333333333332 22333333333321100 00000 00
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000174 530 HEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQ 609 (1931)
Q Consensus 530 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~ 609 (1931)
.-.|+++..-+.++ +++|.+.++...++.+...+..|-..-++-..|+..+
T Consensus 603 lLIIrRLHkVLRPF-----------------------------lLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~ 653 (1157)
T KOG0386|consen 603 LLIIRRLHKVLRPF-----------------------------LLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQ 653 (1157)
T ss_pred HHHHHHHHHhhhHH-----------------------------HHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHH
Confidence 00111111111111 1234445555666666666655543333322222211
Q ss_pred HHHHHhhhhhhhhhhhhHH-HHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCc
Q 000174 610 SFLTALQNDERANYQLDVK-FQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEH 688 (1931)
Q Consensus 610 ~~l~~l~~~~~~~~~~~~~-~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~ 688 (1931)
..-.-+............. -....++++|+.--.. +. ++++
T Consensus 654 ~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf-------------------------~~-------------ve~~ 695 (1157)
T KOG0386|consen 654 NKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLF-------------------------AN-------------VENS 695 (1157)
T ss_pred hCCCCCcCchhccccchhhhhHhHHHHHhcCCchhh-------------------------hh-------------hccc
Confidence 0000000000000000000 0122344444411000 00 0000
Q ss_pred hhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHH
Q 000174 689 VDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQ 768 (1931)
Q Consensus 689 ~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~ 768 (1931)
....... ......+.|+..|-.+|-+. ...+++++.|++.......+..+|.- ..++...+.| .....+
T Consensus 696 ~~~~~~~-~dL~R~sGKfELLDRiLPKL-katgHRVLlF~qMTrlmdimEdyL~~----~~~kYlRLDG-----~TK~~e 764 (1157)
T KOG0386|consen 696 YTLHYDI-KDLVRVSGKFELLDRILPKL-KATGHRVLLFSQMTRLMDILEDYLQI----REYKYLRLDG-----QTKVEE 764 (1157)
T ss_pred cccccCh-hHHHHhccHHHHHHhhhHHH-HhcCcchhhHHHHHHHHHHHHHHHhh----hhhheeeecC-----Ccchhh
Confidence 0000000 01124578999998888887 46789999999999999999999986 7899999999 888999
Q ss_pred HHHHHHHhhcCCc---eEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 769 MQETIAKFRDGRV---TLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 769 R~~~l~~Fr~G~~---~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
|-..++.|..... .+|.+|.+++.|+|++.++.||.||..|||..+.|+..||+|+|++
T Consensus 765 Rg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~ 826 (1157)
T KOG0386|consen 765 RGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQK 826 (1157)
T ss_pred HHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhch
Confidence 9999999995543 3889999999999999999999999999999999999999999988
|
|
| >COG0571 Rnc dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-23 Score=236.42 Aligned_cols=133 Identities=36% Similarity=0.535 Sum_probs=114.9
Q ss_pred HHHhhhcCCCCChhHHH-HHhccccCCCC----CCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHH
Q 000174 1372 IQLKDKINYPVPASKIL-EALTAASCQET----FCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVL 1446 (1931)
Q Consensus 1372 ~~l~~~l~~~~~~~~ll-~AlT~~s~~~~----~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L 1446 (1931)
..|.+.+||+|.+..+| +||||+|+... .|||||||||||||.++++.+||.+||+.+||.||.+|+.+||+..|
T Consensus 9 ~~l~~~lg~~f~~~~lL~~AltH~S~~~e~~~~~~nERLEFLGDavL~l~vae~Lf~~yP~~~EG~Ls~~ra~lV~~~~L 88 (235)
T COG0571 9 EALEKKLGYTFKDKELLEQALTHRSYANEHKAVENNERLEFLGDAVLGLVVAEYLFKKYPNLPEGELSKLRAALVSEESL 88 (235)
T ss_pred HHHHHHhCCCcCCHHHHHHHhcCcchhccccCCcchHHHHhhHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 56788899999987666 99999999754 48999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCccceeccccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCCCC
Q 000174 1447 YQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSS 1526 (1931)
Q Consensus 1447 ~~~a~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1526 (1931)
+.+|..+||+.||+..+... . ..+
T Consensus 89 a~ia~~l~l~~~l~lg~ge~------------------------------------------------~--------~gg 112 (235)
T COG0571 89 AEIARELGLGDYLRLGKGEE------------------------------------------------K--------SGG 112 (235)
T ss_pred HHHHHHhCccchhhccCChh------------------------------------------------h--------cCC
Confidence 99999999999998754110 0 001
Q ss_pred ccccccchhhhHHHHHhhheeeccCHHHHHHHHhHh
Q 000174 1527 YRVLSSKTLADVVEALIGVYYVEGGKDAANHLMKWI 1562 (1931)
Q Consensus 1527 ~~~~~~K~lADvvEALiGA~~l~~G~~~a~~~~~~l 1562 (1931)
.+ .++.+||+|||||||+|+|+|.+.|.+|+..+
T Consensus 113 ~~--~~silaD~~EAligAiylD~g~~~~~~~i~~l 146 (235)
T COG0571 113 RR--RESILADAFEALIGAIYLDSGLEAARKFILKL 146 (235)
T ss_pred CC--chhHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 11 46899999999999999999999999987433
|
|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.5e-22 Score=244.14 Aligned_cols=196 Identities=17% Similarity=0.218 Sum_probs=145.2
Q ss_pred CCCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000174 301 EEQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT 375 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~ 375 (1931)
.-.||.||...+.|+.. -|.|+++++|+|||+..+.++.|+.-. .+..+.-||||||..+.+ |.-+|++|+
T Consensus 613 rGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACe---egnWGPHLIVVpTsviLn-WEMElKRwc 688 (1958)
T KOG0391|consen 613 RGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACE---EGNWGPHLIVVPTSVILN-WEMELKRWC 688 (1958)
T ss_pred HHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhc---ccCCCCceEEeechhhhh-hhHHHhhhC
Confidence 45689999999999854 578999999999999999888777653 355667899999988876 999999998
Q ss_pred -CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhh
Q 000174 376 -GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHT 454 (1931)
Q Consensus 376 -~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~ 454 (1931)
++++-.|+|......-+++.|.+- +..||.|++|..++..+.. ++-.+|.++|+||||++.+- -.+....++..
T Consensus 689 PglKILTYyGs~kErkeKRqgW~kP-naFHVCItSYklv~qd~~A--FkrkrWqyLvLDEaqnIKnf--ksqrWQAllnf 763 (1958)
T KOG0391|consen 689 PGLKILTYYGSHKERKEKRQGWAKP-NAFHVCITSYKLVFQDLTA--FKRKRWQYLVLDEAQNIKNF--KSQRWQALLNF 763 (1958)
T ss_pred CcceEeeecCCHHHHHHHhhcccCC-CeeEEeehhhHHHHhHHHH--HHhhccceeehhhhhhhcch--hHHHHHHHhcc
Confidence 899999999876655555667532 4679999999999877654 67789999999999999862 12222333332
Q ss_pred cCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEE
Q 000174 455 TSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVE 519 (1931)
Q Consensus 455 ~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~ 519 (1931)
+..|+|+||+||.+ +...+|..|..+|-..++ .....+..+...|...++.
T Consensus 764 ----nsqrRLLLtgTPLq--------NslmELWSLmhFLmP~~f--~shd~fk~wfsnPltgmiE 814 (1958)
T KOG0391|consen 764 ----NSQRRLLLTGTPLQ--------NSLMELWSLMHFLMPQTF--ASHDIFKPWFSNPLTGMIE 814 (1958)
T ss_pred ----chhheeeecCCchh--------hHHHHHHHHHHHhhchhh--hhhhhHHHHhcCcchhhcc
Confidence 33678999999985 333455555555555444 3445666777666554443
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=251.82 Aligned_cols=312 Identities=21% Similarity=0.235 Sum_probs=216.3
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHhc-------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHH
Q 000174 294 EAKEKMPEEQARPYQLDVLEQAKK-------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQ 366 (1931)
Q Consensus 294 ~~l~~~~~~~~~~~Q~eai~~~l~-------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q 366 (1931)
+.....-.+.-|+-|..||+.+++ -|=+||++.|-|||-+|+-++--... .++.|.|||||.-||.|
T Consensus 585 ~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~------~GKQVAvLVPTTlLA~Q 658 (1139)
T COG1197 585 EEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM------DGKQVAVLVPTTLLAQQ 658 (1139)
T ss_pred HHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc------CCCeEEEEcccHHhHHH
Confidence 334444456789999999999976 46799999999999999987654333 46889999999999999
Q ss_pred HHHHHHHHc---CCcEEEEeCCCcccccchHHHHhh-cCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCC
Q 000174 367 QAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQRE-FDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKH 442 (1931)
Q Consensus 367 ~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~-~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~ 442 (1931)
.++.|++.+ +++|..++.=.+....+ .....+ -...+|||+|...|. ..+.+.+++|||+||-||..-.|
T Consensus 659 Hy~tFkeRF~~fPV~I~~LSRF~s~kE~~-~il~~la~G~vDIvIGTHrLL~-----kdv~FkdLGLlIIDEEqRFGVk~ 732 (1139)
T COG1197 659 HYETFKERFAGFPVRIEVLSRFRSAKEQK-EILKGLAEGKVDIVIGTHRLLS-----KDVKFKDLGLLIIDEEQRFGVKH 732 (1139)
T ss_pred HHHHHHHHhcCCCeeEEEecccCCHHHHH-HHHHHHhcCCccEEEechHhhC-----CCcEEecCCeEEEechhhcCccH
Confidence 999999876 45566665433322211 111111 237899999998775 56889999999999999998754
Q ss_pred cHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCcee--EEEe
Q 000174 443 PYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEV--VVEY 520 (1931)
Q Consensus 443 ~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~--~~~y 520 (1931)
+..++.+.. ...+|-|||||+... +...+. ...++.-..+.|... +..|
T Consensus 733 --KEkLK~Lr~------~VDvLTLSATPIPRT-------L~Msm~--------------GiRdlSvI~TPP~~R~pV~T~ 783 (1139)
T COG1197 733 --KEKLKELRA------NVDVLTLSATPIPRT-------LNMSLS--------------GIRDLSVIATPPEDRLPVKTF 783 (1139)
T ss_pred --HHHHHHHhc------cCcEEEeeCCCCcch-------HHHHHh--------------cchhhhhccCCCCCCcceEEE
Confidence 344444332 267999999999411 000100 111221122222211 0000
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHh
Q 000174 521 DKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELG 600 (1931)
Q Consensus 521 ~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg 600 (1931)
-...
T Consensus 784 V~~~---------------------------------------------------------------------------- 787 (1139)
T COG1197 784 VSEY---------------------------------------------------------------------------- 787 (1139)
T ss_pred EecC----------------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccccccc
Q 000174 601 QWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDS 680 (1931)
Q Consensus 601 ~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~ 680 (1931)
T Consensus 788 -------------------------------------------------------------------------------- 787 (1139)
T COG1197 788 -------------------------------------------------------------------------------- 787 (1139)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCC
Q 000174 681 HVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNN 760 (1931)
Q Consensus 681 ~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~ 760 (1931)
++.+. --.++++. ..+.++-.-.+.+.+...+++.|+++- +..++++.||
T Consensus 788 ----------------------d~~~i-reAI~REl--~RgGQvfYv~NrV~~Ie~~~~~L~~LV--PEarI~vaHG--- 837 (1139)
T COG1197 788 ----------------------DDLLI-REAILREL--LRGGQVFYVHNRVESIEKKAERLRELV--PEARIAVAHG--- 837 (1139)
T ss_pred ----------------------ChHHH-HHHHHHHH--hcCCEEEEEecchhhHHHHHHHHHHhC--CceEEEEeec---
Confidence 00000 00011111 235677777788888888888888862 6789999999
Q ss_pred CccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCC-CHHHHHHhhccCCCCCCc-EEEEEec
Q 000174 761 SQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAK-TVLAYIQSRGRARKPGSD-YILMIER 834 (1931)
Q Consensus 761 ~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~-s~~~yiQr~GRa~R~Gs~-~ivlv~~ 834 (1931)
.|+..+-++++.+|-+|+++|||||.+.|-|||||++|.+|.-+... -+.+..|-+||+||.+.+ |..|+.+
T Consensus 838 --QM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p 911 (1139)
T COG1197 838 --QMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYP 911 (1139)
T ss_pred --CCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeec
Confidence 99999999999999999999999999999999999999999877654 889999999999998876 5455443
|
|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-22 Score=248.64 Aligned_cols=165 Identities=21% Similarity=0.309 Sum_probs=125.6
Q ss_pred cCCCCCCcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhh----cCCCcEEEEEeCChhHHHHHHHHH
Q 000174 298 KMPEEQARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQR----QNKKMLAVFLVPKVPLVYQQAEVI 371 (1931)
Q Consensus 298 ~~~~~~~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~----~~~~~~vL~LvPT~~Lv~Q~~~~l 371 (1931)
-.++..+..+|.+++|.+.+ .|+|||+|||+|||-+|++.|++.+.+... ..+..++++|+|+++||....+.+
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~ 184 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKF 184 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHH
Confidence 36778899999999999998 899999999999999999999988886322 234568999999999999988888
Q ss_pred HHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhccc----ccccceeEEEEeCCCcccCCCcH
Q 000174 372 REQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSI----IKMEAINLLILDECHHAVKKHPY 444 (1931)
Q Consensus 372 ~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~----l~l~~i~lLV~DEaH~~~~~~~~ 444 (1931)
.+.+ |++|..++|++... ......++|+|+||+.+ |.+.+.. --++.+.|||+||+|.+-++-
T Consensus 185 ~kkl~~~gi~v~ELTGD~ql~-------~tei~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlLhd~R-- 254 (1230)
T KOG0952|consen 185 SKKLAPLGISVRELTGDTQLT-------KTEIADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLLHDDR-- 254 (1230)
T ss_pred hhhcccccceEEEecCcchhh-------HHHHHhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhhcCcc--
Confidence 7754 89999999987532 22247899999999987 4444322 245789999999999997642
Q ss_pred HHHHHHHHhhc-----CCCCCcEEEEEeecCCC
Q 000174 445 SLVMSEFYHTT-----SKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 445 ~~im~~~~~~~-----~~~~~p~iLgLTATP~~ 472 (1931)
...+..+..+. ......|++|||||..|
T Consensus 255 GpvlEtiVaRtlr~vessqs~IRivgLSATlPN 287 (1230)
T KOG0952|consen 255 GPVLETIVARTLRLVESSQSMIRIVGLSATLPN 287 (1230)
T ss_pred cchHHHHHHHHHHHHHhhhhheEEEEeeccCCC
Confidence 22222222221 12334899999999663
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-21 Score=260.33 Aligned_cols=100 Identities=17% Similarity=0.180 Sum_probs=85.1
Q ss_pred CCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCC
Q 000174 720 EDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQC 799 (1931)
Q Consensus 720 ~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~ 799 (1931)
....+|||++++..++.+++.|.... +..+.+..+|| ++++.+|..+++. .|..+|||||+|+|+|||||++
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~-~~~~~VlpLhg-----~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI 356 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLN-LRHTEILPLYA-----RLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGI 356 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcC-CCcceEeeccc-----CCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcc
Confidence 45689999999999999999998732 23455788999 9999999999876 5788999999999999999999
Q ss_pred CEEEEcC---------------CCC---CHHHHHHhhccCCCCCCc
Q 000174 800 NVVIRFD---------------LAK---TVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 800 ~lVI~fD---------------~p~---s~~~yiQr~GRa~R~Gs~ 827 (1931)
++||+++ +|. |..+|+||.|||||.+..
T Consensus 357 ~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G 402 (1294)
T PRK11131 357 KYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEG 402 (1294)
T ss_pred eEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCCCc
Confidence 9999986 343 557899999999998544
|
|
| >PRK12372 ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-23 Score=245.18 Aligned_cols=132 Identities=30% Similarity=0.483 Sum_probs=112.7
Q ss_pred HHHhhhcCCCCChhHHH-HHhccccCCCCCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHHHHHH
Q 000174 1372 IQLKDKINYPVPASKIL-EALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYA 1450 (1931)
Q Consensus 1372 ~~l~~~l~~~~~~~~ll-~AlT~~s~~~~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L~~~a 1450 (1931)
.+|+++|||.|.+..|| +||||+|+.. .||||||||||+||+|+++.|||.+||+++||.||.+|+.+|||.+|+.+|
T Consensus 4 ~~LEk~LGY~Fkn~~LL~eALTH~Sy~~-~~NERLEFLGDAVL~liVse~Lf~~fP~~~EG~LT~lRS~LVsn~tLA~IA 82 (413)
T PRK12372 4 SQLESRLRYEFRNAELLRQALTHRSHSA-THNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIA 82 (413)
T ss_pred HHHHHHhCCCcCCHHHHHHHHhcccccc-ccHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhHHHHHHH
Confidence 35788899999765555 9999999854 489999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccceeccccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCCCCcccc
Q 000174 1451 LSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSSYRVL 1530 (1931)
Q Consensus 1451 ~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1530 (1931)
.++||.+||+...-. .| ... ..
T Consensus 83 ~~LgL~~~Lrlg~ge--~~------------------------------------------------------sgg--~~ 104 (413)
T PRK12372 83 QALNISEGLRLGEGE--LR------------------------------------------------------SGG--FR 104 (413)
T ss_pred HHcCchHhhhcCcch--hh------------------------------------------------------cCC--CC
Confidence 999999998854200 00 000 12
Q ss_pred ccchhhhHHHHHhhheeeccCHHHHHHHHhHh
Q 000174 1531 SSKTLADVVEALIGVYYVEGGKDAANHLMKWI 1562 (1931)
Q Consensus 1531 ~~K~lADvvEALiGA~~l~~G~~~a~~~~~~l 1562 (1931)
.+|++||+|||||||+|+|+|++.+..|+..+
T Consensus 105 ~~kILADvfEALIGAIYLDsG~e~a~~fV~~l 136 (413)
T PRK12372 105 RPSILADAFEAIIGAVFLDGGFEAAQGVIKRL 136 (413)
T ss_pred CccHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 57899999999999999999999999998655
|
|
| >KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-22 Score=228.05 Aligned_cols=155 Identities=27% Similarity=0.338 Sum_probs=132.7
Q ss_pred CCChHHHHHHHHhhcCCceeEEecc-C----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhhhhhhccC
Q 000174 1765 MHPVRELQERCQQQAEGLEYKASRS-G----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEKETAEAKEKG 1839 (1931)
Q Consensus 1765 ~~P~~~L~e~~~~~~~~~~y~~~~~-g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~~~~ 1839 (1931)
+.||+.|||++.+++..+.|++.++ | +.|+++|.|+ .+.++|.|.|||.||++||+.+|..|+....+....++
T Consensus 38 KS~IS~l~E~~~r~~~~v~fevl~eeGp~H~~~fv~rvtvg-~~~a~GeG~sKK~AKh~AA~~~L~~lk~l~~l~~v~k~ 116 (339)
T KOG3732|consen 38 KSPISLLQEYGLRRGLTPVYEVLREEGPPHMPNFVFRVTVG-EITATGEGKSKKLAKHRAAEALLKELKKLPPLANVRKD 116 (339)
T ss_pred CChHHHHHHHHHHhCCCcceeeeeccCCccCCCeEEEEEEe-eeEEecCCCchhHHHHHHHHHHHHHHhcCCCccccccC
Confidence 8999999999999999999998874 4 3799999986 66699999999999999999999999988766654433
Q ss_pred CcCCc--------c-----cCCCCccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECC
Q 000174 1840 DENGK--------K-----RKNGTQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGE 1906 (1931)
Q Consensus 1840 ~~~~~--------~-----~~~~~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~ 1906 (1931)
..... . ...+...|||+.|+||||+++|+.|.|+++.+.|++|.++|++.|+|. ..+.+|+|
T Consensus 117 ~~~~~~~~~~~~~~~q~~d~~~~~~~NPI~~L~e~~q~k~~k~P~yelv~E~G~~~~rEFv~q~sv~----~~~~~GkG- 191 (339)
T KOG3732|consen 117 SLKFAKMKSSGVKKDQPGDPEYGQVLNPIGRLQELAQAKKWKLPEYELVQESGVPHRREFVIQCSVE----NFTEEGKG- 191 (339)
T ss_pred cccccccccCCccccCCCCcccccccChHHHHHHHHHHhCCCCCceEEEeccCCCccceEEEEEEec----ceeeecCC-
Confidence 21110 0 112346899999999999999999999999999999999999999995 33678999
Q ss_pred CCCCHHHHHHHHHHHHHHHHh
Q 000174 1907 PMPSVKKAKDSAAVLLLELLN 1927 (1931)
Q Consensus 1907 ~~~sKK~Ak~~AA~~~l~~L~ 1927 (1931)
+|||.||++||..||+.|.
T Consensus 192 --~sKKiAKRnAAeamLe~l~ 210 (339)
T KOG3732|consen 192 --PSKKIAKRNAAEAMLESLG 210 (339)
T ss_pred --chHHHHHHHHHHHHHHHhc
Confidence 9999999999999999986
|
|
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.8e-22 Score=225.59 Aligned_cols=115 Identities=17% Similarity=0.235 Sum_probs=102.7
Q ss_pred CCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCC
Q 000174 720 EDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQC 799 (1931)
Q Consensus 720 ~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~ 799 (1931)
-..++||+|.||..++.++-.|.. .|+....+|. ++...+|.++-+++.++++.|++||...+.|+|-|+|
T Consensus 254 ~~GCGIVYCRTR~~cEq~AI~l~~----~Gi~A~AYHA-----GLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~V 324 (641)
T KOG0352|consen 254 FTGCGIVYCRTRNECEQVAIMLEI----AGIPAMAYHA-----GLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDV 324 (641)
T ss_pred cCcceEEEeccHHHHHHHHHHhhh----cCcchHHHhc-----ccccchhHHHHHHHhcCCCCEEEEEeccccccCCcce
Confidence 357899999999999999999987 7999999999 9999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCCHHHHHHhhccCCCCCCc--EEEEEecCChhHHHHH
Q 000174 800 NVVIRFDLAKTVLAYIQSRGRARKPGSD--YILMIERGNLSHATFL 843 (1931)
Q Consensus 800 ~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivlv~~~~~~~~~~l 843 (1931)
..||++|+|.|+..|.|-.|||||.|.. +.+...+.+...-.|+
T Consensus 325 RFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FL 370 (641)
T KOG0352|consen 325 RFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFL 370 (641)
T ss_pred eEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHH
Confidence 9999999999999999999999999976 5555565554433333
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.5e-21 Score=251.81 Aligned_cols=98 Identities=23% Similarity=0.255 Sum_probs=83.5
Q ss_pred CCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHH----HHHHHHh-hcCC---ceEEEEecccc
Q 000174 720 EDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQM----QETIAKF-RDGR---VTLLVATSVAE 791 (1931)
Q Consensus 720 ~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R----~~~l~~F-r~G~---~~vLVaTdVae 791 (1931)
.+.++||||+++..|..+++.|++... ....+..+|| .++..+| +++++.| ++|+ ..|||||+|+|
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~~-~~~~v~llHs-----rf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE 632 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELNN-TQVDIDLFHA-----RFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVE 632 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhCC-CCceEEEEeC-----CCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchh
Confidence 467899999999999999999986311 2367999999 8888777 5688999 6676 47999999999
Q ss_pred cCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCC
Q 000174 792 EGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGS 826 (1931)
Q Consensus 792 eGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs 826 (1931)
+|||| ++++||....| ...++||+||++|.+.
T Consensus 633 ~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 633 QSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred heeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 99999 68999998887 6799999999999875
|
|
| >KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.5e-22 Score=236.57 Aligned_cols=481 Identities=15% Similarity=0.176 Sum_probs=258.0
Q ss_pred CCCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000174 301 EEQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT 375 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~ 375 (1931)
.-++.+||...+.|+.. -|.|+++++|+|||++.+..+.++.+.. +-.++.|||+|...| ..|+++|.+++
T Consensus 565 ~ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~---nIwGPFLVVtpaStL-~NWaqEisrFl 640 (1185)
T KOG0388|consen 565 KCTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETH---NIWGPFLVVTPASTL-HNWAQEISRFL 640 (1185)
T ss_pred hhhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhc---cCCCceEEeehHHHH-hHHHHHHHHhC
Confidence 34678999999999865 5789999999999999999998888753 445679999998877 56999999987
Q ss_pred -CCcEEEEeCCCccc-----ccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHH
Q 000174 376 -GYVVGHYCGEMGQD-----FWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMS 449 (1931)
Q Consensus 376 -~l~v~~~~G~~~~~-----~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~ 449 (1931)
.+++.-+.|+.... .|......+.....+|+|+|||.+. ....++.--.|.+.|+|||+-+...+ ....+
T Consensus 641 P~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvV--tDeky~qkvKWQYMILDEAQAIKSSs--S~RWK 716 (1185)
T KOG0388|consen 641 PSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVV--TDEKYLQKVKWQYMILDEAQAIKSSS--SSRWK 716 (1185)
T ss_pred ccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeee--chHHHHHhhhhhheehhHHHHhhhhh--hhHHH
Confidence 68999999986532 2333322334468899999999887 34455666789999999999987632 22223
Q ss_pred HHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEe-cchHHHhhhCCCCceeEEEeccchhhhH
Q 000174 450 EFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTI-KDRKELEKHVPMPSEVVVEYDKAASLWS 528 (1931)
Q Consensus 450 ~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~-~~~~~l~~~~~~p~e~~~~y~~~~~~~~ 528 (1931)
.++.. ....+|+||+||++ +.++.|+++|+=..-+. ....++..+..+-.|........-
T Consensus 717 tLLsF----~cRNRLLLTGTPIQ-----------NsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~tl---- 777 (1185)
T KOG0388|consen 717 TLLSF----KCRNRLLLTGTPIQ-----------NSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTTL---- 777 (1185)
T ss_pred HHhhh----hccceeeecCCccc-----------hHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCCc----
Confidence 33322 22558999999996 24455555544111111 112233333222222111111000
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHH--HHHHHHHhHHHHHH
Q 000174 529 LHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAI--NYALGELGQWCAYK 606 (1931)
Q Consensus 529 l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~--~~~l~~lg~~~a~~ 606 (1931)
-..+++++...+.++.........-.-++. +.+. .+++.+..+.....+.+...+..+ ...+..+...|.+.
T Consensus 778 neqqL~RLH~ILKPFMLRRvKkdV~sELg~-----Ktei-dv~CdLs~RQ~~lYq~ik~~iS~~E~~~~vmQlrKVCNHP 851 (1185)
T KOG0388|consen 778 NEQQLQRLHAILKPFMLRRVKKDVISELGQ-----KTEI-DVYCDLSYRQKVLYQEIKRSISSMEMENLVMQLRKVCNHP 851 (1185)
T ss_pred CHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-----ceEE-EEEechhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCh
Confidence 001222222222222211111000000000 0000 000000000000001111111100 00222333333321
Q ss_pred HHHHHHHHhhh-----------------hhhh--hhhhhHHH----HH-------HHHHHHHHHhhhhhhhccccccccc
Q 000174 607 VAQSFLTALQN-----------------DERA--NYQLDVKF----QE-------SYLSKVVSLLQCELVEGAVSKKDAK 656 (1931)
Q Consensus 607 ~~~~~l~~l~~-----------------~~~~--~~~~~~~~----~~-------~yl~~i~~~l~~~~~~~~~~~~~~~ 656 (1931)
-+ +..++. ..+. .+.+.... .+ .|..+++.......-++...-....
T Consensus 852 dL---Fer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l 928 (1185)
T KOG0388|consen 852 DL---FERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRL 928 (1185)
T ss_pred HH---HhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccc
Confidence 11 111110 0000 00111000 00 0111111111000000100000000
Q ss_pred cccccccc--------------------ccCCccc-----------c---ccccccc----cccccCCCchh--------
Q 000174 657 VVDSENGF--------------------VEGGTNE-----------I---EEGELLD----SHVVSGGEHVD-------- 690 (1931)
Q Consensus 657 i~~~~~~~--------------------~~~~~~~-----------l---~~~~l~~----~~~~s~~e~~~-------- 690 (1931)
+.+...+. .....+. | ...+.+. +..++...++.
T Consensus 929 ~~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~ 1008 (1185)
T KOG0388|consen 929 SLEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRH 1008 (1185)
T ss_pred eeeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccC
Confidence 00000000 0000000 0 0000000 00111110100
Q ss_pred hhhhhccc------CCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccc
Q 000174 691 VIIGAAVA------DGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEM 764 (1931)
Q Consensus 691 ~~i~~~~~------~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~ 764 (1931)
..+...+. --..|.|+..|-++|.+. ...++|+++|.+-..+.+.+.++|.. .++....+.| ..
T Consensus 1009 ~pLn~~i~~Ppm~~FitdSgKL~~LDeLL~kL-kaegHRvL~yfQMTkM~dl~EdYl~y----r~Y~ylRLDG-----Ss 1078 (1185)
T KOG0388|consen 1009 IPLNTTIYVPPMNTFITDSGKLVVLDELLPKL-KAEGHRVLMYFQMTKMIDLIEDYLVY----RGYTYLRLDG-----SS 1078 (1185)
T ss_pred cccccceecCcHHhhhccccceeeHHHHHHHh-hcCCceEEehhHHHHHHHHHHHHHHh----hccceEEecC-----cc
Confidence 00111110 113478999999999887 56789999999999999999999987 7899999999 78
Q ss_pred cHHHHHHHHHHhhcCCc-eEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 765 RTFQMQETIAKFRDGRV-TLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 765 ~~~~R~~~l~~Fr~G~~-~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
....|..++.+|...++ -+|++|.+++-|||+.+++.||.||..|||....|.+.||+|.|+.
T Consensus 1079 k~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQT 1142 (1185)
T KOG0388|consen 1079 KASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQT 1142 (1185)
T ss_pred hhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCc
Confidence 88899999999996554 4899999999999999999999999999999999999999999988
|
|
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-20 Score=248.48 Aligned_cols=315 Identities=17% Similarity=0.236 Sum_probs=224.2
Q ss_pred hhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH
Q 000174 295 AKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE 373 (1931)
Q Consensus 295 ~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~ 373 (1931)
.....|....|+-|.++|..++. ++++|.++||.||.++|.+|+.-. .+..|||.|.++|+..|...+ .
T Consensus 256 l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~---------~gitvVISPL~SLm~DQv~~L-~ 325 (941)
T KOG0351|consen 256 LKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL---------GGVTVVISPLISLMQDQVTHL-S 325 (941)
T ss_pred HHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc---------CCceEEeccHHHHHHHHHHhh-h
Confidence 34557889999999999999888 999999999999999999986421 347999999999999988888 3
Q ss_pred HcCCcEEEEeCCCcccccchHHHHhhcC---CccEEEEcHHHHHHH--Hhcccccccc---eeEEEEeCCCcccC-CCcH
Q 000174 374 QTGYVVGHYCGEMGQDFWDAQRWQREFD---TKQVLVMTAQILLNI--LRHSIIKMEA---INLLILDECHHAVK-KHPY 444 (1931)
Q Consensus 374 ~~~l~v~~~~G~~~~~~~~~~~w~~~~~---~~~IlV~Tpq~L~d~--L~~~~l~l~~---i~lLV~DEaH~~~~-~~~~ 444 (1931)
..+++...++++..... ....|+.+.. ..+|+..||+.+... +.+....+.. +.++|+||||.... .|.|
T Consensus 326 ~~~I~a~~L~s~q~~~~-~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdF 404 (941)
T KOG0351|consen 326 KKGIPACFLSSIQTAAE-RLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDF 404 (941)
T ss_pred hcCcceeeccccccHHH-HHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccc
Confidence 46888888888876432 2345555443 578999999998742 2222223444 89999999999985 3667
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEE--ecc
Q 000174 445 SLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVE--YDK 522 (1931)
Q Consensus 445 ~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~--y~~ 522 (1931)
+...+.+-..........+|+||||-.. .+. +++...+..+...+.. ++.
T Consensus 405 Rp~Yk~l~~l~~~~~~vP~iALTATAT~--------~v~--------------------~DIi~~L~l~~~~~~~~sfnR 456 (941)
T KOG0351|consen 405 RPSYKRLGLLRIRFPGVPFIALTATATE--------RVR--------------------EDVIRSLGLRNPELFKSSFNR 456 (941)
T ss_pred cHHHHHHHHHHhhCCCCCeEEeehhccH--------HHH--------------------HHHHHHhCCCCcceecccCCC
Confidence 6665555443322223458999999531 111 1111111111111000 000
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHH
Q 000174 523 AASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQW 602 (1931)
Q Consensus 523 ~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~ 602 (1931)
.+. .|.+...
T Consensus 457 ~NL--------------------------------------------~yeV~~k-------------------------- 466 (941)
T KOG0351|consen 457 PNL--------------------------------------------KYEVSPK-------------------------- 466 (941)
T ss_pred CCc--------------------------------------------eEEEEec--------------------------
Confidence 000 0000000
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccccccccc
Q 000174 603 CAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHV 682 (1931)
Q Consensus 603 ~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~ 682 (1931)
T Consensus 467 -------------------------------------------------------------------------------- 466 (941)
T KOG0351|consen 467 -------------------------------------------------------------------------------- 466 (941)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCc
Q 000174 683 VSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQ 762 (1931)
Q Consensus 683 ~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~ 762 (1931)
........+...++. ..++..+||+|.++.+++.+...|.. .++++..+|+
T Consensus 467 ------------------~~~~~~~~~~~~~~~--~~~~~s~IIYC~sr~~ce~vs~~L~~----~~~~a~~YHA----- 517 (941)
T KOG0351|consen 467 ------------------TDKDALLDILEESKL--RHPDQSGIIYCLSRKECEQVSAVLRS----LGKSAAFYHA----- 517 (941)
T ss_pred ------------------cCccchHHHHHHhhh--cCCCCCeEEEeCCcchHHHHHHHHHH----hchhhHhhhc-----
Confidence 000000011111112 24567899999999999999999998 5789999999
Q ss_pred cccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 763 EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 763 ~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
+|+..+|+.+..+|-.++++|+|||=+.+.|||.|+|..||||.+|.+.+.|.|-.|||||.|..
T Consensus 518 Gl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~ 582 (941)
T KOG0351|consen 518 GLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLP 582 (941)
T ss_pred CCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999976
|
|
| >smart00535 RIBOc Ribonuclease III family | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.8e-22 Score=210.03 Aligned_cols=126 Identities=40% Similarity=0.632 Sum_probs=109.1
Q ss_pred HHHHHHhcCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHHHHHHHHHcCchhhhccC
Q 000174 1607 GLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHG 1686 (1931)
Q Consensus 1607 ~LL~~AlTH~S~~~~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~La~~a~~~gl~~~l~~~ 1686 (1931)
.||.+|||||||.... ++|||||||||+||+++++.|+|.+||+.++|.|+.+++.+|+|+.|+.+|.++||+++++.+
T Consensus 1 ~ll~~alth~s~~~~~-~~~e~Le~lGd~vl~~~v~~~l~~~~p~~~~~~l~~~~~~lvsn~~la~~a~~~~l~~~i~~~ 79 (129)
T smart00535 1 SLLLRALTHASYSNEH-EHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSNETLARLAKKLGLGEFIRLG 79 (129)
T ss_pred CHHHHHhhcccccccC-cchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHCHHHHHHHHHHCCcHHHHccC
Confidence 3799999999996544 799999999999999999999999999999999999999999999999999999999999987
Q ss_pred CchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCceeEEeeeccCCCCCC
Q 000174 1687 SSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMV 1758 (1931)
Q Consensus 1687 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~~~v~~~~~~~l~~~i 1758 (1931)
...... .....+|+++|+|||+|||||+|+|.+ .+++|+..++.|.+
T Consensus 80 ~~~~~~-----------------------~~~~~~k~~a~~~eAliGAi~ld~g~~--~~~~~i~~~~~~~~ 126 (129)
T smart00535 80 RGEAIS-----------------------GGRDKPSILADVFEALIGAIYLDSGLE--AAREFIRDLLGPRL 126 (129)
T ss_pred chHhhc-----------------------CCcccchHHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHh
Confidence 654310 113579999999999999999999854 66677777666543
|
|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-19 Score=206.51 Aligned_cols=120 Identities=17% Similarity=0.227 Sum_probs=107.1
Q ss_pred CCCCCHHHHHHHHHHHHh-cCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhh
Q 000174 699 DGKVTPKVQSLIKILLKY-QHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFR 777 (1931)
Q Consensus 699 ~~~~s~Kv~~Li~lL~~~-~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr 777 (1931)
....|.|+++|.+.|.-. .....-|.|||.+...+.+.+.-.|.+ .|+.++-+.| +|+...|..+++.|+
T Consensus 615 ~~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~k----aGfscVkL~G-----sMs~~ardatik~F~ 685 (791)
T KOG1002|consen 615 DWQSSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGK----AGFSCVKLVG-----SMSPAARDATIKYFK 685 (791)
T ss_pred hhcchhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhc----cCceEEEecc-----CCChHHHHHHHHHhc
Confidence 446688999999988665 344567899999999999999999988 7999999999 999999999999999
Q ss_pred cC-Cce-EEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 778 DG-RVT-LLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 778 ~G-~~~-vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
+. .+. +||+-.+++--+|+..+..|...|+-||+.--.|...|++|+||.
T Consensus 686 nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~ 737 (791)
T KOG1002|consen 686 NDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQY 737 (791)
T ss_pred cCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCc
Confidence 54 555 677889999999999999999999999999999999999999998
|
|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-20 Score=214.29 Aligned_cols=385 Identities=16% Similarity=0.149 Sum_probs=229.4
Q ss_pred cCCCCCCcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000174 298 KMPEEQARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT 375 (1931)
Q Consensus 298 ~~~~~~~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~ 375 (1931)
..-+..+.|+|++.+..+++ +.++++++||+|||++|+..+..+.. ....|||||.. |-.-|++++++|+
T Consensus 193 ~kLvs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyra-------EwplliVcPAs-vrftWa~al~r~l 264 (689)
T KOG1000|consen 193 PKLVSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRA-------EWPLLIVCPAS-VRFTWAKALNRFL 264 (689)
T ss_pred HHHHHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhh-------cCcEEEEecHH-HhHHHHHHHHHhc
Confidence 34567799999999999998 77999999999999999998776544 24599999974 5677999999998
Q ss_pred C--CcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHh
Q 000174 376 G--YVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYH 453 (1931)
Q Consensus 376 ~--l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~ 453 (1931)
+ .++.++.++.... ........|.|.+++.|..+ +..+.-..+.+||+||+|++.+.. .+..+....
T Consensus 265 ps~~pi~vv~~~~D~~-------~~~~t~~~v~ivSye~ls~l--~~~l~~~~~~vvI~DEsH~Lk~sk--tkr~Ka~~d 333 (689)
T KOG1000|consen 265 PSIHPIFVVDKSSDPL-------PDVCTSNTVAIVSYEQLSLL--HDILKKEKYRVVIFDESHMLKDSK--TKRTKAATD 333 (689)
T ss_pred ccccceEEEecccCCc-------cccccCCeEEEEEHHHHHHH--HHHHhcccceEEEEechhhhhccc--hhhhhhhhh
Confidence 5 3444555443211 11123467999999988733 334556679999999999998632 111222222
Q ss_pred hcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCC-ceeEEEeccchhhhHHHHH
Q 000174 454 TTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMP-SEVVVEYDKAASLWSLHEQ 532 (1931)
Q Consensus 454 ~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p-~e~~~~y~~~~~~~~l~~~ 532 (1931)
... ...++|+||+||.-.. +..+..+|..+...+... ..+.-.++..-. ......|........|.-.
T Consensus 334 llk--~akhvILLSGTPavSR----P~elytqi~avd~tlfp~-----f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~l 402 (689)
T KOG1000|consen 334 LLK--VAKHVILLSGTPAVSR----PSELYTQIRAVDHTLFPN-----FHEFAIRYCDGKQVRFCFDYKGCTNLEELAAL 402 (689)
T ss_pred HHH--HhhheEEecCCcccCC----chhhhhhhhhhccccccc-----HHHHHHHhcCccccceeeecCCCCCHHHHHHH
Confidence 211 1267999999998533 333333444443333221 111222222211 1123334333333333333
Q ss_pred HHH-HHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHH-HHHHHH
Q 000174 533 LKQ-MEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCA-YKVAQS 610 (1931)
Q Consensus 533 i~~-l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a-~~~~~~ 610 (1931)
+.+ ++.+- .+.+...+|+.+-+.+.+.+. |...+ ...
T Consensus 403 L~k~lMIRR------------------------------------lK~dvL~qLPpKrr~Vv~~~~--gr~da~~~~--- 441 (689)
T KOG1000|consen 403 LFKRLMIRR------------------------------------LKADVLKQLPPKRREVVYVSG--GRIDARMDD--- 441 (689)
T ss_pred HHHHHHHHH------------------------------------HHHHHHhhCCccceEEEEEcC--CccchHHHH---
Confidence 222 11111 011111111111000000000 00000 000
Q ss_pred HHHHhhhhhhhhhhhhHHHHHH--HHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCc
Q 000174 611 FLTALQNDERANYQLDVKFQES--YLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEH 688 (1931)
Q Consensus 611 ~l~~l~~~~~~~~~~~~~~~~~--yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~ 688 (1931)
.... ...+......++. -+...++
T Consensus 442 lv~~-----a~~~t~~~~~e~~~~~l~l~y~------------------------------------------------- 467 (689)
T KOG1000|consen 442 LVKA-----AADYTKVNSMERKHESLLLFYS------------------------------------------------- 467 (689)
T ss_pred HHHH-----hhhcchhhhhhhhhHHHHHHHH-------------------------------------------------
Confidence 0000 0000000000000 0000000
Q ss_pred hhhhhhhcccCCCCCHHHHHHHHHHHH---hcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCcccc
Q 000174 689 VDVIIGAAVADGKVTPKVQSLIKILLK---YQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMR 765 (1931)
Q Consensus 689 ~~~~i~~~~~~~~~s~Kv~~Li~lL~~---~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~ 765 (1931)
...-.|+....+.|.. +...+..|.+||+......+-+...+.+ .++....|.| ..+
T Consensus 468 -----------~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~----r~vg~IRIDG-----st~ 527 (689)
T KOG1000|consen 468 -----------LTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNK----RKVGSIRIDG-----STP 527 (689)
T ss_pred -----------HhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHH----cCCCeEEecC-----CCC
Confidence 0112355555555554 2356778999999999999999999998 7899999999 888
Q ss_pred HHHHHHHHHHhh-cCCce-EEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 766 TFQMQETIAKFR-DGRVT-LLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 766 ~~~R~~~l~~Fr-~G~~~-vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
..+|+...++|. +.++. -+++--+++.||++.++++||...++|||--.+|.-.||+|.||+
T Consensus 528 s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQk 591 (689)
T KOG1000|consen 528 SHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQK 591 (689)
T ss_pred chhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhcccc
Confidence 999999999999 45555 345667899999999999999999999999999999999999998
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-20 Score=249.75 Aligned_cols=100 Identities=17% Similarity=0.184 Sum_probs=84.6
Q ss_pred CCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCC
Q 000174 720 EDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQC 799 (1931)
Q Consensus 720 ~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~ 799 (1931)
....+|||+++...+..+++.|.... ...+.+..+|| ++++.+|+++++.+ +..+|||||+|+|+|||||++
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~-~~~~~VlpLhg-----~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV 349 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRN-LRHTEILPLYA-----RLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGI 349 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcC-CCCcEEEeccC-----CCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCe
Confidence 34689999999999999999998642 13567889999 99999999986554 236899999999999999999
Q ss_pred CEEEEcCCCC------------------CHHHHHHhhccCCCCCCc
Q 000174 800 NVVIRFDLAK------------------TVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 800 ~lVI~fD~p~------------------s~~~yiQr~GRa~R~Gs~ 827 (1931)
.+||+++++. |..+|+||.|||||.|..
T Consensus 350 ~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G 395 (1283)
T TIGR01967 350 HYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPG 395 (1283)
T ss_pred eEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCCCc
Confidence 9999998543 567999999999998755
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >cd00593 RIBOc RIBOc | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.7e-22 Score=210.08 Aligned_cols=127 Identities=40% Similarity=0.610 Sum_probs=111.5
Q ss_pred HHHHHhcCCCCCCCC-CCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHHHHHHHHHcCchhhhccC
Q 000174 1608 LLVEAITHASRPSSG-VSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHG 1686 (1931)
Q Consensus 1608 LL~~AlTH~S~~~~~-~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~La~~a~~~gl~~~l~~~ 1686 (1931)
||.+||||+|+.... ..+|||||||||+||+++++.|+|..+|+.++|.|+.+++.+|||++|+.+|.++||+++++..
T Consensus 2 ll~~alth~s~~~~~~~~~~e~Le~lGdavl~~~~~~~l~~~~~~~~~~~l~~~~~~~v~n~~l~~~a~~~gl~~~i~~~ 81 (133)
T cd00593 2 LLLEALTHPSYANEHGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVSNETLARLARELGLGKYLRLG 81 (133)
T ss_pred HHHHhhcCccccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHCHHHHHHHHHHcCcHHHhccC
Confidence 799999999997552 4799999999999999999999999999999999999999999999999999999999999987
Q ss_pred CchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCceeEEeeeccCCCCCCC
Q 000174 1687 SSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMVT 1759 (1931)
Q Consensus 1687 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~~~v~~~~~~~l~~~i~ 1759 (1931)
+..... .....+|+++|+|||+|||||+|+|. +.+++|+..++.|.+.
T Consensus 82 ~~~~~~-----------------------~~~~~~k~~ad~~eAliGAiyld~g~--~~~~~~i~~~~~~~~~ 129 (133)
T cd00593 82 KGEEKS-----------------------GGRLRPKILADVFEALIGAIYLDGGF--EAARKFLLRLLGPLIE 129 (133)
T ss_pred chHhhc-----------------------CCcccccHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHh
Confidence 765321 12467999999999999999999997 4677888777666544
|
Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing. |
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-18 Score=193.97 Aligned_cols=296 Identities=24% Similarity=0.309 Sum_probs=198.9
Q ss_pred CCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc-
Q 000174 302 EQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT- 375 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~- 375 (1931)
-+++++|+.+-..++. .++||.+-||+|||.+..-.|...+. .+.++.+..|.+..|...+..++.-+
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~------~G~~vciASPRvDVclEl~~Rlk~aF~ 169 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALN------QGGRVCIASPRVDVCLELYPRLKQAFS 169 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHh------cCCeEEEecCcccchHHHHHHHHHhhc
Confidence 4799999998777654 78999999999999877777666655 36789999999999999999999866
Q ss_pred CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhc
Q 000174 376 GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTT 455 (1931)
Q Consensus 376 ~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~ 455 (1931)
+..+..++|+...- +. ..++|+|-..|+..-+ .+++||+||+|-. ||...-.-.+...
T Consensus 170 ~~~I~~Lyg~S~~~----------fr-~plvVaTtHQLlrFk~-------aFD~liIDEVDAF----P~~~d~~L~~Av~ 227 (441)
T COG4098 170 NCDIDLLYGDSDSY----------FR-APLVVATTHQLLRFKQ-------AFDLLIIDEVDAF----PFSDDQSLQYAVK 227 (441)
T ss_pred cCCeeeEecCCchh----------cc-ccEEEEehHHHHHHHh-------hccEEEEeccccc----cccCCHHHHHHHH
Confidence 59999999986431 23 6788888887775543 4899999999987 4433322222211
Q ss_pred C-CCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHh-cCCeEEEecchH-HHhhhCCCCceeEEEeccchhhhHHHHH
Q 000174 456 S-KEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESK-LDSVVCTIKDRK-ELEKHVPMPSEVVVEYDKAASLWSLHEQ 532 (1931)
Q Consensus 456 ~-~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~-l~~~i~t~~~~~-~l~~~~~~p~e~~~~y~~~~~~~~l~~~ 532 (1931)
. ....--++.|||||.. .|+.. ....+....-.. .-.+-++.|.....
T Consensus 228 ~ark~~g~~IylTATp~k---------------~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~-------------- 278 (441)
T COG4098 228 KARKKEGATIYLTATPTK---------------KLERKILKGNLRILKLPARFHGKPLPVPKFVWI-------------- 278 (441)
T ss_pred HhhcccCceEEEecCChH---------------HHHHHhhhCCeeEeecchhhcCCCCCCCceEEe--------------
Confidence 1 1112447889999974 22211 111111110000 00011111111100
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000174 533 LKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFL 612 (1931)
Q Consensus 533 i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l 612 (1931)
|.|..
T Consensus 279 -------------------------------------------------------------------~~~~k-------- 283 (441)
T COG4098 279 -------------------------------------------------------------------GNWNK-------- 283 (441)
T ss_pred -------------------------------------------------------------------ccHHH--------
Confidence 01100
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhh
Q 000174 613 TALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVI 692 (1931)
Q Consensus 613 ~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~ 692 (1931)
T Consensus 284 -------------------------------------------------------------------------------- 283 (441)
T COG4098 284 -------------------------------------------------------------------------------- 283 (441)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHH
Q 000174 693 IGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQET 772 (1931)
Q Consensus 693 i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~ 772 (1931)
.+......+|+ +..|++. ...+.-++||+++..+.+.++..|+.. ++...++++|+ ....|.+.
T Consensus 284 ---~l~r~kl~~kl---~~~lekq-~~~~~P~liF~p~I~~~eq~a~~lk~~--~~~~~i~~Vhs-------~d~~R~Ek 347 (441)
T COG4098 284 ---KLQRNKLPLKL---KRWLEKQ-RKTGRPVLIFFPEIETMEQVAAALKKK--LPKETIASVHS-------EDQHRKEK 347 (441)
T ss_pred ---HhhhccCCHHH---HHHHHHH-HhcCCcEEEEecchHHHHHHHHHHHhh--CCccceeeeec-------cCccHHHH
Confidence 00011223333 3344443 345678999999999999999999542 35567788887 23568899
Q ss_pred HHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCC--CCHHHHHHhhccCCCCC
Q 000174 773 IAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLA--KTVLAYIQSRGRARKPG 825 (1931)
Q Consensus 773 l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p--~s~~~yiQr~GRa~R~G 825 (1931)
++.||+|++.|||+|.++|||+.+|+++++|.=--. .+-.+.||-.||+||.-
T Consensus 348 V~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~ 402 (441)
T COG4098 348 VEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSL 402 (441)
T ss_pred HHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCC
Confidence 999999999999999999999999999987654333 68899999999999964
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.9e-19 Score=230.78 Aligned_cols=153 Identities=18% Similarity=0.232 Sum_probs=107.9
Q ss_pred CCCcHHHHHHHHHHhc-----------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHH
Q 000174 302 EQARPYQLDVLEQAKK-----------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEV 370 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-----------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~ 370 (1931)
.-+|.+|..++..+.+ ++.+++++||||||++++..+..++.. ....++|||||+.+|+.||.+.
T Consensus 237 ~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~----~~~~~vl~lvdR~~L~~Q~~~~ 312 (667)
T TIGR00348 237 PYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL----LKNPKVFFVVDRRELDYQLMKE 312 (667)
T ss_pred eehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh----cCCCeEEEEECcHHHHHHHHHH
Confidence 3489999999998754 368999999999999999988877642 3457899999999999999999
Q ss_pred HHHHcCCcEEEEeCCCcccccchHHHHhhcC--CccEEEEcHHHHHHHHhcc--cccccce-eEEEEeCCCcccCCCcHH
Q 000174 371 IREQTGYVVGHYCGEMGQDFWDAQRWQREFD--TKQVLVMTAQILLNILRHS--IIKMEAI-NLLILDECHHAVKKHPYS 445 (1931)
Q Consensus 371 l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~~--~~~IlV~Tpq~L~d~L~~~--~l~l~~i-~lLV~DEaH~~~~~~~~~ 445 (1931)
|+.+....+ .+..+ ...+...+. ...|+|+|.|.|.+.+... .+....- .+||+|||||.... .|.
T Consensus 313 f~~~~~~~~---~~~~s-----~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~-~~~ 383 (667)
T TIGR00348 313 FQSLQKDCA---ERIES-----IAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG-ELA 383 (667)
T ss_pred HHhhCCCCC---cccCC-----HHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch-HHH
Confidence 998653111 11111 122222222 4689999999998654321 1122222 28999999998763 566
Q ss_pred HHHHHHHhhcCCCCCcEEEEEeecCCCC
Q 000174 446 LVMSEFYHTTSKEKRPSVFGMTASPVNL 473 (1931)
Q Consensus 446 ~im~~~~~~~~~~~~p~iLgLTATP~~~ 473 (1931)
..|+..+. ...+|||||||...
T Consensus 384 ~~l~~~~p------~a~~lGfTaTP~~~ 405 (667)
T TIGR00348 384 KNLKKALK------NASFFGFTGTPIFK 405 (667)
T ss_pred HHHHhhCC------CCcEEEEeCCCccc
Confidence 66655442 25799999999864
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.4e-19 Score=213.16 Aligned_cols=459 Identities=19% Similarity=0.154 Sum_probs=254.2
Q ss_pred CCCcHHHHHHHHHHhc------cCEEEEeCCCchHHHHHHHHHHHHHHHhhh---c-CCCcEEEEEeCChhHHHHHHHHH
Q 000174 302 EQARPYQLDVLEQAKK------KNTIAFLETGAGKTLIAVLLIRSICNDLQR---Q-NKKMLAVFLVPKVPLVYQQAEVI 371 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~------~n~Il~~~TGsGKTliall~i~~~l~~~~~---~-~~~~~vL~LvPT~~Lv~Q~~~~l 371 (1931)
..+.|+|+.++.|+.- ...|+++++|.|||++.+.+|.+--..... . ......|||||. .|..||..++
T Consensus 324 v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa-Sli~qW~~Ev 402 (901)
T KOG4439|consen 324 VELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA-SLIHQWEAEV 402 (901)
T ss_pred eecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH-HHHHHHHHHH
Confidence 5688999999999864 568999999999999877766543221111 1 111259999996 6899999999
Q ss_pred HHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHH----HHhcc----cccccceeEEEEeCCCcccC
Q 000174 372 REQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLN----ILRHS----IIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 372 ~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d----~L~~~----~l~l~~i~lLV~DEaH~~~~ 440 (1931)
.+.+ -++|.++||... ++.-.+.+..++|||+||....+ -+..+ .+.--.|.-||+||||.+++
T Consensus 403 ~~rl~~n~LsV~~~HG~n~-----r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN 477 (901)
T KOG4439|consen 403 ARRLEQNALSVYLYHGPNK-----REISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRN 477 (901)
T ss_pred HHHHhhcceEEEEecCCcc-----ccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcc
Confidence 9876 588999999753 22223456899999999998876 22221 12234578999999999998
Q ss_pred CCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEE---------------ecchH-
Q 000174 441 KHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCT---------------IKDRK- 504 (1931)
Q Consensus 441 ~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t---------------~~~~~- 504 (1931)
...-....-.-+. ...+..+||||++.+. .|+. .|-.++...-+. ..++.
T Consensus 478 ~~tq~S~AVC~L~------a~~RWclTGTPiqNn~----~Dvy----sLlrFLr~~pF~D~~~Wke~i~~~s~~g~~rln 543 (901)
T KOG4439|consen 478 SNTQCSKAVCKLS------AKSRWCLTGTPIQNNL----WDVY----SLLRFLRCPPFGDLKQWKENIDNMSKGGANRLN 543 (901)
T ss_pred cchhHHHHHHHHh------hcceeecccCccccch----hHHH----HHHHHhcCCCcchHHHHHHhccCccccchhhhh
Confidence 5433322111111 1347999999997443 3333 332222221111 00100
Q ss_pred ------HHh----------hhCCCCceeEE--Eeccch----hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhccc--cc
Q 000174 505 ------ELE----------KHVPMPSEVVV--EYDKAA----SLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGA--RD 560 (1931)
Q Consensus 505 ------~l~----------~~~~~p~e~~~--~y~~~~----~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~--r~ 560 (1931)
.+. +.+..|...+. ...... ...-+.+.-+.+... ++.....+.....+.. +.
T Consensus 544 ll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq---~L~~~e~~~~~~~~~s~~~~ 620 (901)
T KOG4439|consen 544 LLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQ---FLLQREDRNNDGGYQSRNRF 620 (901)
T ss_pred hhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHH---HHHhhhhhccccCccccchh
Confidence 011 12233432222 111111 111111111222211 1211111111100000 00
Q ss_pred chhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 000174 561 AGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSL 640 (1931)
Q Consensus 561 ~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~ 640 (1931)
.+...+...-|.+..|....+. -......+...+..|.+.|.+-.+. ...++..+......+...++..-......
T Consensus 621 ~~~~~e~~~~~~~~pR~~aags--n~~~~s~IL~LLlrLRQ~ccH~~~~--k~~ld~~~~~~~g~~~sde~~~e~~~l~e 696 (901)
T KOG4439|consen 621 IGGHDEFGNYYNIGPRFLAAGS--NFEIMSHILVLLLRLRQACCHFGLL--KAALDPEEFQMNGGDDSDEEQLEEDNLAE 696 (901)
T ss_pred ccccccccccccccchhhhcCC--chhhHHHHHHHHHHHHHHhcCcchh--ccccCHHHhhhcCcchhhhhhhhhhHHHh
Confidence 1111111112222222211111 1122223555566777777753111 11111111111111111111000000000
Q ss_pred hhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCC
Q 000174 641 LQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTE 720 (1931)
Q Consensus 641 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~ 720 (1931)
+... ....+.+.-.+ .++. + -.+ +.......|.|+..++++|.......
T Consensus 697 l~k~----------------~~T~~~~D~~e----d~p~--~-----~~~----q~Fe~~r~S~Ki~~~l~~le~i~~~s 745 (901)
T KOG4439|consen 697 LEKN----------------DETDCSDDNCE----DLPT--A-----FPD----QAFEPDRPSCKIAMVLEILETILTSS 745 (901)
T ss_pred hhhc----------------ccccccccccc----cccc--c-----chh----hhcccccchhHHHHHHHHHHHHhhcc
Confidence 0000 00000000000 0000 0 000 11223356889999999998875667
Q ss_pred CceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhh--cCCce-EEEEecccccCCCCC
Q 000174 721 DFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFR--DGRVT-LLVATSVAEEGLDIR 797 (1931)
Q Consensus 721 ~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr--~G~~~-vLVaTdVaeeGlDip 797 (1931)
..++||-.+.......+...|+. .++....++| ....++|+++++.|. +|..+ .|++-.+++-|||+-
T Consensus 746 keK~viVSQwtsvLniv~~hi~~----~g~~y~si~G-----qv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~ 816 (901)
T KOG4439|consen 746 KEKVVIVSQWTSVLNIVRKHIQK----GGHIYTSITG-----QVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLI 816 (901)
T ss_pred cceeeehhHHHHHHHHHHHHHhh----CCeeeeeecC-----ccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeec
Confidence 78899988888888888888888 6788999999 899999999999998 55455 556778999999999
Q ss_pred CCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 798 QCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 798 ~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
..||+|..|+.|||.---|...|+.|.|++
T Consensus 817 GaNHlilvDlHWNPaLEqQAcDRIYR~GQk 846 (901)
T KOG4439|consen 817 GANHLILVDLHWNPALEQQACDRIYRMGQK 846 (901)
T ss_pred ccceEEEEecccCHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999
|
|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.3e-19 Score=220.22 Aligned_cols=149 Identities=19% Similarity=0.302 Sum_probs=117.3
Q ss_pred CCCCCCcHHHHHHHHHHhc------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH
Q 000174 299 MPEEQARPYQLDVLEQAKK------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR 372 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~ 372 (1931)
.....+|.||..||.++.+ +.++++|.||+|||.+|+.+|..+++ .+..++||||+-+++|+.|-...+.
T Consensus 161 ~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r----~~~~KRVLFLaDR~~Lv~QA~~af~ 236 (875)
T COG4096 161 DSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIK----SGWVKRVLFLADRNALVDQAYGAFE 236 (875)
T ss_pred cccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHh----cchhheeeEEechHHHHHHHHHHHH
Confidence 3457899999999999764 45999999999999999998877766 4567899999999999999999999
Q ss_pred HHcCC--cEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcc-----cccccceeEEEEeCCCcccCCCcHH
Q 000174 373 EQTGY--VVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS-----IIKMEAINLLILDECHHAVKKHPYS 445 (1931)
Q Consensus 373 ~~~~l--~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~-----~l~l~~i~lLV~DEaH~~~~~~~~~ 445 (1931)
.+.+. .+..+.+.... ..++|.|+|+|++...+.+. .+....++|||+|||||-.-+ -|+
T Consensus 237 ~~~P~~~~~n~i~~~~~~------------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~-~~~ 303 (875)
T COG4096 237 DFLPFGTKMNKIEDKKGD------------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYS-EWS 303 (875)
T ss_pred HhCCCccceeeeecccCC------------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHh-hhH
Confidence 98743 33333332211 25799999999999988664 245667999999999998763 677
Q ss_pred HHHHHHHhhcCCCCCcEEEEEeecCCC
Q 000174 446 LVMSEFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 446 ~im~~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
.|+..|-.. ++||||||..
T Consensus 304 ~I~dYFdA~--------~~gLTATP~~ 322 (875)
T COG4096 304 SILDYFDAA--------TQGLTATPKE 322 (875)
T ss_pred HHHHHHHHH--------HHhhccCccc
Confidence 777766543 5677999985
|
|
| >PRK00102 rnc ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-20 Score=218.13 Aligned_cols=136 Identities=32% Similarity=0.448 Sum_probs=115.5
Q ss_pred HHHhhhcCCCCCh-hHHHHHhccccCC----CCCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHH
Q 000174 1372 IQLKDKINYPVPA-SKILEALTAASCQ----ETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVL 1446 (1931)
Q Consensus 1372 ~~l~~~l~~~~~~-~~ll~AlT~~s~~----~~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L 1446 (1931)
..|+..|||.|.+ .++++||||+|+. ...||||||||||++|+++++.|||.+||+.++|.|+.+|+.+|||.+|
T Consensus 6 ~~l~~~lg~~f~~~~ll~~Alth~S~~~~~~~~~~nerLefLGDavl~~~v~~~l~~~~p~~~~g~l~~~~~~lvsn~~l 85 (229)
T PRK00102 6 EELQKKLGYTFKDPELLIQALTHRSYANENKGLKHNERLEFLGDAVLELVVSEYLFKRFPDLDEGDLSKLRAALVREESL 85 (229)
T ss_pred HHHHHHhCCCCCCHHHHHHHhCccchhccCCCcccchhHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHHHH
Confidence 4678899999988 5555999999985 3579999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCccceeccccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCCCC
Q 000174 1447 YQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSS 1526 (1931)
Q Consensus 1447 ~~~a~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1526 (1931)
+.+|.++||+.||+..+-.. ..
T Consensus 86 a~~a~~lgl~~~i~~~~~~~------------------------------------------------~~---------- 107 (229)
T PRK00102 86 AEIARELGLGEYLLLGKGEE------------------------------------------------KS---------- 107 (229)
T ss_pred HHHHHHCCcHHHHccCcHHH------------------------------------------------Hc----------
Confidence 99999999999997643000 00
Q ss_pred ccccccchhhhHHHHHhhheeeccCHHHHHHHHhHhhcc
Q 000174 1527 YRVLSSKTLADVVEALIGVYYVEGGKDAANHLMKWIGIQ 1565 (1931)
Q Consensus 1527 ~~~~~~K~lADvvEALiGA~~l~~G~~~a~~~~~~l~i~ 1565 (1931)
.....+|.+||+|||+|||+|+|+|.+.|.+|+..+-.+
T Consensus 108 ~~~~~~k~~ad~~EA~iGAiyld~g~~~~~~~i~~~~~~ 146 (229)
T PRK00102 108 GGRRRPSILADAFEALIGAIYLDQGLEAARKFILRLFEP 146 (229)
T ss_pred CCCCCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 001246899999999999999999999999998766433
|
|
| >smart00535 RIBOc Ribonuclease III family | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-20 Score=197.60 Aligned_cols=117 Identities=41% Similarity=0.569 Sum_probs=103.8
Q ss_pred HHHHHhccccCCCCC-CCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHHHHHHHHcCCccceecccc
Q 000174 1386 KILEALTAASCQETF-CYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQADRF 1464 (1931)
Q Consensus 1386 ~ll~AlT~~s~~~~~-nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L~~~a~~~gL~~~i~~~~f 1464 (1931)
++++||||+|+.... ||||||||||+||+++++.|+|.+||+.++|.|+.+|+.+|||++|+++|.++||++||+..++
T Consensus 2 ll~~alth~s~~~~~~~~e~Le~lGd~vl~~~v~~~l~~~~p~~~~~~l~~~~~~lvsn~~la~~a~~~~l~~~i~~~~~ 81 (129)
T smart00535 2 LLLRALTHASYSNEHEHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSNETLARLAKKLGLGEFIRLGRG 81 (129)
T ss_pred HHHHHhhcccccccCcchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHCHHHHHHHHHHCCcHHHHccCch
Confidence 577999999998776 9999999999999999999999999999999999999999999999999999999999987542
Q ss_pred CC-CCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCCCCccccccchhhhHHHHHh
Q 000174 1465 AP-SRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSSYRVLSSKTLADVVEALI 1543 (1931)
Q Consensus 1465 ~~-~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADvvEALi 1543 (1931)
.. +.| ..++|.+||+|||+|
T Consensus 82 ~~~~~~-----------------------------------------------------------~~~~k~~a~~~eAli 102 (129)
T smart00535 82 EAISGG-----------------------------------------------------------RDKPSILADVFEALI 102 (129)
T ss_pred HhhcCC-----------------------------------------------------------cccchHHHHHHHHHH
Confidence 11 000 135799999999999
Q ss_pred hheeeccCHHHHHHHHhH
Q 000174 1544 GVYYVEGGKDAANHLMKW 1561 (1931)
Q Consensus 1544 GA~~l~~G~~~a~~~~~~ 1561 (1931)
||+|+++|.+.|.+|+..
T Consensus 103 GAi~ld~g~~~~~~~i~~ 120 (129)
T smart00535 103 GAIYLDSGLEAAREFIRD 120 (129)
T ss_pred HHHHHhCCHHHHHHHHHH
Confidence 999999999999998843
|
|
| >PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3 | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.8e-21 Score=194.84 Aligned_cols=114 Identities=42% Similarity=0.612 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHHHHHHHHHcCchhhhccCCchhHHHHHHHHHHHHHhhc
Q 000174 1627 QRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELL 1706 (1931)
Q Consensus 1627 eRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~La~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~ 1706 (1931)
|||||||||||+++|+.|||.+||+.+||.||.+|+++|||++|+.+|+++||++|++..+......+..+.+.+.....
T Consensus 1 ErLefLGDavL~~~v~~~l~~~~p~~~~~~L~~~r~~~vsn~~L~~~a~~~gl~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (114)
T PF00636_consen 1 ERLEFLGDAVLKLLVSEYLFEKYPNLNEGQLTKLRSALVSNKFLARLAVKLGLHKYLRQEPFEIQRWIKPFNEDLNNGDS 80 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHSHHHHHHHHHHTTHGCTCBHHHHHHHHHHHCHHCC------
T ss_pred CcHhHhHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHHHHHHHHHHhCchHhhhccchhHHHHHHHHHHHHHhccc
Confidence 89999999999999999999999999999999999999999999999999999999997666554443332111111110
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHhHhhcccc
Q 000174 1707 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSG 1740 (1931)
Q Consensus 1707 ~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg 1740 (1931)
..............+|++||+|||+|||||+|+|
T Consensus 81 ~~~~~~~~~~~~~~~k~laD~~EAliGAiyld~G 114 (114)
T PF00636_consen 81 ESSISYDPKNQVLPPKVLADVFEALIGAIYLDSG 114 (114)
T ss_dssp -C-SSS--SSSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCCccccCCccHHHHHHHHHHHHHHHHhcC
Confidence 0000000012345689999999999999999998
|
1.26.3 from EC) (gene rnc) [] is an enzyme that digests double-stranded RNA. It is involved in the processing of ribosomal RNA precursors and of some mRNAs. RNase III is evolutionary related to a number of proteins including []: Saccharomyces cerevisiae (Baker's yeast) protein pac1, a ribonuclease that probably inhibits mating and meiosis by degrading a specific mRNA required for sexual development yeast ribonuclease III (gene RNT1), a dsRNA-specific nuclease that cleaves eukaryotic preribosomal RNA at various sites Caenorhabditis elegans hypothetical protein F26E4.13 Paramecium bursaria Chlorella virus 1 (PBCV-1) 1 protein A464R Synechocystis sp. (strain PCC 6803) hypothetical protein slr0346 yeast hypothetical protein SpAC8A4.08c, a protein with a N-terminal helicase domain and a C-terminal RNase III domain C. elegans hypothetical protein K12H4.8, a protein with the same structure as SpAC8A4.08c ; GO: 0003723 RNA binding, 0004525 ribonuclease III activity, 0006396 RNA processing; PDB: 2GSL_A 2NUE_B 1YYO_A 2NUF_A 1YZ9_A 1JFZ_A 1YYW_C 1RC5_B 1YYK_B 1RC7_A .... |
| >PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.1e-21 Score=198.78 Aligned_cols=120 Identities=41% Similarity=0.509 Sum_probs=95.7
Q ss_pred hhHHHHHhccccCC--CCCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHHHHHHHHcCCccceec
Q 000174 1384 ASKILEALTAASCQ--ETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQA 1461 (1931)
Q Consensus 1384 ~~~ll~AlT~~s~~--~~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L~~~a~~~gL~~~i~~ 1461 (1931)
..++++||||+|+. ...||||||||||++|+++++.|+|.++|. +||.++.+|+.+|+|.+|+++|.++||+++|+.
T Consensus 2 ~~Ll~~alTH~S~~~~~~~~nerLefLGd~vL~~~vs~~l~~~~~~-~~g~l~~~~~~lv~~~~La~~a~~lgL~~~i~~ 80 (128)
T PF14622_consen 2 DELLLQALTHKSYAHERKPNNERLEFLGDAVLGLVVSEYLFQRPPA-DEGELTRLRSNLVSNETLAEIAKQLGLDKLIRW 80 (128)
T ss_dssp HHHHHHHTB-HHHHHHTCB-SHHHHHHHHHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHSHHHHHHHHHHTTCGGC-B-
T ss_pred HHHHHHHhcCccccccccCccHHHHHHHHHHHHHHHHHHHHhCcCc-cchHHHHHHHHHhChHHHHHHHHHCCHHHHHHh
Confidence 35667999999985 257999999999999999999999999555 899999999999999999999999999999986
Q ss_pred cccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCCCCccccccchhhhHHHH
Q 000174 1462 DRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSSYRVLSSKTLADVVEA 1541 (1931)
Q Consensus 1462 ~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADvvEA 1541 (1931)
.+-.. .......+|.+||+|||
T Consensus 81 ~~~~~----------------------------------------------------------~~~~~~~~~vlad~feA 102 (128)
T PF14622_consen 81 GPGEE----------------------------------------------------------KSGGSGSDKVLADVFEA 102 (128)
T ss_dssp -HHHH----------------------------------------------------------HTTGGG-HHHHHHHHHH
T ss_pred CccHh----------------------------------------------------------hcCCCCCccHHHhHHHH
Confidence 32000 00012247899999999
Q ss_pred HhhheeeccCHHHHHHHHhHh
Q 000174 1542 LIGVYYVEGGKDAANHLMKWI 1562 (1931)
Q Consensus 1542 LiGA~~l~~G~~~a~~~~~~l 1562 (1931)
||||+|+|+|.+.|..|+...
T Consensus 103 liGAiyld~G~~~a~~~i~~~ 123 (128)
T PF14622_consen 103 LIGAIYLDSGFEAARKFIQKL 123 (128)
T ss_dssp HHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHHH
Confidence 999999999999999998654
|
|
| >cd00593 RIBOc RIBOc | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-20 Score=198.30 Aligned_cols=120 Identities=43% Similarity=0.602 Sum_probs=107.0
Q ss_pred HHHHHhccccCCCC---CCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHHHHHHHHcCCccceecc
Q 000174 1386 KILEALTAASCQET---FCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQAD 1462 (1931)
Q Consensus 1386 ~ll~AlT~~s~~~~---~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L~~~a~~~gL~~~i~~~ 1462 (1931)
++++||||+|+... .||||||||||++|+++++.++|..+|+.++|.|+.+|+.+|||++|+++|.++||+.||+..
T Consensus 2 ll~~alth~s~~~~~~~~~~e~Le~lGdavl~~~~~~~l~~~~~~~~~~~l~~~~~~~v~n~~l~~~a~~~gl~~~i~~~ 81 (133)
T cd00593 2 LLLEALTHPSYANEHGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVSNETLARLARELGLGKYLRLG 81 (133)
T ss_pred HHHHhhcCccccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHCHHHHHHHHHHcCcHHHhccC
Confidence 56799999999875 899999999999999999999999999999999999999999999999999999999999876
Q ss_pred ccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCCCCccccccchhhhHHHHH
Q 000174 1463 RFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSSYRVLSSKTLADVVEAL 1542 (1931)
Q Consensus 1463 ~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADvvEAL 1542 (1931)
+..... ....++|.+||+||||
T Consensus 82 ~~~~~~----------------------------------------------------------~~~~~~k~~ad~~eAl 103 (133)
T cd00593 82 KGEEKS----------------------------------------------------------GGRLRPKILADVFEAL 103 (133)
T ss_pred chHhhc----------------------------------------------------------CCcccccHHHHHHHHH
Confidence 522100 1134689999999999
Q ss_pred hhheeeccCHHHHHHHHhHhh
Q 000174 1543 IGVYYVEGGKDAANHLMKWIG 1563 (1931)
Q Consensus 1543 iGA~~l~~G~~~a~~~~~~l~ 1563 (1931)
|||+|+++|.+.|.+||.++-
T Consensus 104 iGAiyld~g~~~~~~~i~~~~ 124 (133)
T cd00593 104 IGAIYLDGGFEAARKFLLRLL 124 (133)
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999999863
|
Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing. |
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.2e-19 Score=225.77 Aligned_cols=166 Identities=23% Similarity=0.318 Sum_probs=122.6
Q ss_pred CCCCCCcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhhc-----CCCcEEEEEeCChhHHHHHHHHH
Q 000174 299 MPEEQARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQRQ-----NKKMLAVFLVPKVPLVYQQAEVI 371 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~~-----~~~~~vL~LvPT~~Lv~Q~~~~l 371 (1931)
.+...+..+|..+...++. .|+++|||||+|||-++++-|++-+....+. -...++++++|..+||..|...|
T Consensus 305 ~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgsf 384 (1674)
T KOG0951|consen 305 FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSF 384 (1674)
T ss_pred ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHH
Confidence 4567799999999999998 8999999999999999999887766543321 12347999999999999999999
Q ss_pred HHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcc-c--ccccceeEEEEeCCCcccCCCc--
Q 000174 372 REQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS-I--IKMEAINLLILDECHHAVKKHP-- 443 (1931)
Q Consensus 372 ~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~-~--l~l~~i~lLV~DEaH~~~~~~~-- 443 (1931)
.+++ |+.|...+|+.... ...+.+.+|+|+||+.. |.+.+. . -..+-++++|+||.|.+-++-+
T Consensus 385 SkRla~~GI~V~ElTgD~~l~-------~~qieeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpv 456 (1674)
T KOG0951|consen 385 SKRLAPLGITVLELTGDSQLG-------KEQIEETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPV 456 (1674)
T ss_pred HhhccccCcEEEEecccccch-------hhhhhcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhhcccccchH
Confidence 8864 88999999986542 23457899999999987 344442 1 2234688999999999854322
Q ss_pred HHHHH-HHHHhhcCCCCCcEEEEEeecCCC
Q 000174 444 YSLVM-SEFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 444 ~~~im-~~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
-..+. +.+.+.......++++|||||..|
T Consensus 457 LESIVaRt~r~ses~~e~~RlVGLSATLPN 486 (1674)
T KOG0951|consen 457 LESIVARTFRRSESTEEGSRLVGLSATLPN 486 (1674)
T ss_pred HHHHHHHHHHHhhhcccCceeeeecccCCc
Confidence 22232 233332233345999999999764
|
|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.4e-18 Score=220.54 Aligned_cols=114 Identities=20% Similarity=0.187 Sum_probs=100.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCc
Q 000174 702 VTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRV 781 (1931)
Q Consensus 702 ~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~ 781 (1931)
...|...+++.+.+. +..+..+||||.++..++.|+.+|.. .+++...+|| .+.+.+++.+.+.|+.|.
T Consensus 426 ~~~k~~av~~~i~~~-~~~g~PVLVgt~Sie~sE~ls~~L~~----~gi~h~vLna-----k~~q~Ea~iia~Ag~~G~- 494 (896)
T PRK13104 426 QADKFQAIIEDVREC-GVRKQPVLVGTVSIEASEFLSQLLKK----ENIKHQVLNA-----KFHEKEAQIIAEAGRPGA- 494 (896)
T ss_pred HHHHHHHHHHHHHHH-HhCCCCEEEEeCcHHHHHHHHHHHHH----cCCCeEeecC-----CCChHHHHHHHhCCCCCc-
Confidence 346888888887665 56778899999999999999999998 7899999999 899999999999999994
Q ss_pred eEEEEecccccCCCCCCC--------------------------------------CEEEEcCCCCCHHHHHHhhccCCC
Q 000174 782 TLLVATSVAEEGLDIRQC--------------------------------------NVVIRFDLAKTVLAYIQSRGRARK 823 (1931)
Q Consensus 782 ~vLVaTdVaeeGlDip~~--------------------------------------~lVI~fD~p~s~~~yiQr~GRa~R 823 (1931)
|+|||++|+||+||.=- =+||--..+.|.+---|-+|||||
T Consensus 495 -VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGR 573 (896)
T PRK13104 495 -VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGR 573 (896)
T ss_pred -EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhcccccc
Confidence 99999999999999732 168888899999999999999999
Q ss_pred CCCc
Q 000174 824 PGSD 827 (1931)
Q Consensus 824 ~Gs~ 827 (1931)
.|..
T Consensus 574 QGDP 577 (896)
T PRK13104 574 QGDP 577 (896)
T ss_pred CCCC
Confidence 8865
|
|
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-18 Score=193.20 Aligned_cols=300 Identities=17% Similarity=0.235 Sum_probs=205.0
Q ss_pred CCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCc
Q 000174 300 PEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYV 378 (1931)
Q Consensus 300 ~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~ 378 (1931)
...+.||.|.+++...+. .++++.+|||.||+++|.+|++- ..+.+||++|...|+..|.-.++. +|+.
T Consensus 91 ~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~---------adg~alvi~plislmedqil~lkq-lgi~ 160 (695)
T KOG0353|consen 91 HLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC---------ADGFALVICPLISLMEDQILQLKQ-LGID 160 (695)
T ss_pred hHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh---------cCCceEeechhHHHHHHHHHHHHH-hCcc
Confidence 446789999999999988 99999999999999999999752 246799999999999999888886 5666
Q ss_pred EEEEeCCCcccccchHHHHh-hc----CCccEEEEcHHHHHHH------HhcccccccceeEEEEeCCCcccC-CCcHHH
Q 000174 379 VGHYCGEMGQDFWDAQRWQR-EF----DTKQVLVMTAQILLNI------LRHSIIKMEAINLLILDECHHAVK-KHPYSL 446 (1931)
Q Consensus 379 v~~~~G~~~~~~~~~~~w~~-~~----~~~~IlV~Tpq~L~d~------L~~~~l~l~~i~lLV~DEaH~~~~-~~~~~~ 446 (1931)
..++....+... ..|-. .. .....+..||+.+... |+ ..+....+.+|-+||+|.+.. .|.|+.
T Consensus 161 as~lnansske~---~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkle-ka~~~~~~~~iaidevhccsqwghdfr~ 236 (695)
T KOG0353|consen 161 ASMLNANSSKEE---AKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLE-KALEAGFFKLIAIDEVHCCSQWGHDFRP 236 (695)
T ss_pred hhhccCcccHHH---HHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHH-HHhhcceeEEEeecceeehhhhCcccCc
Confidence 666555443221 11211 11 2567899999987642 22 235567789999999999984 255554
Q ss_pred HHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhh
Q 000174 447 VMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASL 526 (1931)
Q Consensus 447 im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~ 526 (1931)
..+.+--....-....++|||||..+ ...+....+.-++..+ |+ ..-..+|+........+..
T Consensus 237 dy~~l~ilkrqf~~~~iigltatatn-----~vl~d~k~il~ie~~~-----tf------~a~fnr~nl~yev~qkp~n- 299 (695)
T KOG0353|consen 237 DYKALGILKRQFKGAPIIGLTATATN-----HVLDDAKDILCIEAAF-----TF------RAGFNRPNLKYEVRQKPGN- 299 (695)
T ss_pred chHHHHHHHHhCCCCceeeeehhhhc-----chhhHHHHHHhHHhhh-----ee------ecccCCCCceeEeeeCCCC-
Confidence 43322111111223569999999653 2223333333333321 11 0111222221110000000
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHH
Q 000174 527 WSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYK 606 (1931)
Q Consensus 527 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~ 606 (1931)
T Consensus 300 -------------------------------------------------------------------------------- 299 (695)
T KOG0353|consen 300 -------------------------------------------------------------------------------- 299 (695)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCC
Q 000174 607 VAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGG 686 (1931)
Q Consensus 607 ~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~ 686 (1931)
T Consensus 300 -------------------------------------------------------------------------------- 299 (695)
T KOG0353|consen 300 -------------------------------------------------------------------------------- 299 (695)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccH
Q 000174 687 EHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRT 766 (1931)
Q Consensus 687 e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~ 766 (1931)
...-.+.+.++++. .-.+..+||+|-++..++.++..|+. .|+....+|. .|.+
T Consensus 300 ---------------~dd~~edi~k~i~~--~f~gqsgiiyc~sq~d~ekva~alkn----~gi~a~~yha-----~lep 353 (695)
T KOG0353|consen 300 ---------------EDDCIEDIAKLIKG--DFAGQSGIIYCFSQKDCEKVAKALKN----HGIHAGAYHA-----NLEP 353 (695)
T ss_pred ---------------hHHHHHHHHHHhcc--ccCCCcceEEEeccccHHHHHHHHHh----cCcccccccc-----ccCc
Confidence 00000111111211 12356789999999999999999998 6889999999 8988
Q ss_pred HHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHH
Q 000174 767 FQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQ 816 (1931)
Q Consensus 767 ~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQ 816 (1931)
.++..+-+.+-.|+++|+|||-+.+.|||-|+|..||+-.+|.+...|.|
T Consensus 354 ~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyq 403 (695)
T KOG0353|consen 354 EDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQ 403 (695)
T ss_pred cccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHH
Confidence 89999999999999999999999999999999999999999999999999
|
|
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.6e-19 Score=206.45 Aligned_cols=322 Identities=20% Similarity=0.267 Sum_probs=216.9
Q ss_pred CCCCCCcHHHHHHHHHHhc----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHH
Q 000174 299 MPEEQARPYQLDVLEQAKK----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQ 374 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~ 374 (1931)
.+-..+||||...+..+.. +..||++|.|+|||++.+-.+.. -++++||||....-|.||...+..|
T Consensus 298 KPst~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t---------ikK~clvLcts~VSVeQWkqQfk~w 368 (776)
T KOG1123|consen 298 KPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT---------IKKSCLVLCTSAVSVEQWKQQFKQW 368 (776)
T ss_pred CcccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee---------ecccEEEEecCccCHHHHHHHHHhh
Confidence 4567899999999999986 77899999999999998876543 2567999999999999999999998
Q ss_pred cCC---cEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhc--------ccccccceeEEEEeCCCcccCCCc
Q 000174 375 TGY---VVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH--------SIIKMEAINLLILDECHHAVKKHP 443 (1931)
Q Consensus 375 ~~l---~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~--------~~l~l~~i~lLV~DEaH~~~~~~~ 443 (1931)
..+ .++.++++... | ...++.|+|+|+.++..--.+ .++.-..|+++|+||+|-+-. +-
T Consensus 369 sti~d~~i~rFTsd~Ke-------~--~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA-~M 438 (776)
T KOG1123|consen 369 STIQDDQICRFTSDAKE-------R--FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPA-KM 438 (776)
T ss_pred cccCccceEEeeccccc-------c--CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchH-HH
Confidence 754 46666655321 1 125788999999988643222 134567899999999999977 46
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccc
Q 000174 444 YSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKA 523 (1931)
Q Consensus 444 ~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~ 523 (1931)
|+.++...-..+ .||||||.++.++ .|..|.-++.++++.... -++.+..+.. .+.
T Consensus 439 FRRVlsiv~aHc-------KLGLTATLvREDd---------KI~DLNFLIGPKlYEAnW-mdL~~kGhIA---~Vq---- 494 (776)
T KOG1123|consen 439 FRRVLSIVQAHC-------KLGLTATLVREDD---------KITDLNFLIGPKLYEANW-MDLQKKGHIA---KVQ---- 494 (776)
T ss_pred HHHHHHHHHHHh-------hccceeEEeeccc---------cccccceeecchhhhccH-HHHHhCCcee---EEe----
Confidence 888877666554 5999999987554 222333233333322211 1111000000 000
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHH
Q 000174 524 ASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWC 603 (1931)
Q Consensus 524 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~ 603 (1931)
-.-.||
T Consensus 495 --------------------------------------------------------------------------CaEVWC 500 (776)
T KOG1123|consen 495 --------------------------------------------------------------------------CAEVWC 500 (776)
T ss_pred --------------------------------------------------------------------------eeeeec
Confidence 001233
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccc
Q 000174 604 AYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVV 683 (1931)
Q Consensus 604 a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~ 683 (1931)
.. ...|-..|++.-...- .+
T Consensus 501 pM--------------------t~eFy~eYL~~~t~kr----------------------------------~l------ 520 (776)
T KOG1123|consen 501 PM--------------------TPEFYREYLRENTRKR----------------------------------ML------ 520 (776)
T ss_pred CC--------------------CHHHHHHHHhhhhhhh----------------------------------he------
Confidence 31 1122233333211100 00
Q ss_pred cCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCcc
Q 000174 684 SGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQE 763 (1931)
Q Consensus 684 s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~ 763 (1931)
..-..|.--+..+.|-++....+.|+|||..........+-.|.+ -+|.| .
T Consensus 521 ---------------LyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K---------pfIYG-----~ 571 (776)
T KOG1123|consen 521 ---------------LYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK---------PFIYG-----P 571 (776)
T ss_pred ---------------eeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC---------ceEEC-----C
Confidence 001123223344555555455789999999998877776655544 36789 8
Q ss_pred ccHHHHHHHHHHhh-cCCceEEEEecccccCCCCCCCCEEEEcCCCC-CHHHHHHhhccCCCCCC
Q 000174 764 MRTFQMQETIAKFR-DGRVTLLVATSVAEEGLDIRQCNVVIRFDLAK-TVLAYIQSRGRARKPGS 826 (1931)
Q Consensus 764 ~~~~~R~~~l~~Fr-~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~-s~~~yiQr~GRa~R~Gs 826 (1931)
.++.+|.++|+.|+ +..+|-++-+.|+...||+|.+|++|+..... +-++-.||.||+-|+..
T Consensus 572 Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk 636 (776)
T KOG1123|consen 572 TSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKK 636 (776)
T ss_pred CchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhh
Confidence 99999999999999 77899999999999999999999999987654 77888999999987643
|
|
| >TIGR02191 RNaseIII ribonuclease III, bacterial | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.3e-20 Score=211.82 Aligned_cols=132 Identities=33% Similarity=0.479 Sum_probs=112.0
Q ss_pred HhhhcCCCCChhHHH-HHhccccCCC-----CCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHHH
Q 000174 1374 LKDKINYPVPASKIL-EALTAASCQE-----TFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLY 1447 (1931)
Q Consensus 1374 l~~~l~~~~~~~~ll-~AlT~~s~~~-----~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L~ 1447 (1931)
|+++|||.|.+..|+ +||||+|+.. ..||||||||||++|+++++.|||.+||+.++|.|+.+|+.+|||.+|+
T Consensus 1 ~e~~lgy~F~~~~ll~~Alth~S~~~~~~~~~~~nerLe~lGd~vl~~~~~~~l~~~~p~~~~~~l~~~~~~lvsn~~la 80 (220)
T TIGR02191 1 LEKRLGYKFKNKELLEQALTHSSYANEHHKGVKNNERLEFLGDAVLGLVVAEYLFKNFPDLSEGELSKLRAALVSEESLA 80 (220)
T ss_pred ChHHhCCCcCCHHHHHHHhcCcccccccccCccchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCHHHHH
Confidence 456789999985555 9999999864 3599999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCccceeccccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCCCCc
Q 000174 1448 QYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSSY 1527 (1931)
Q Consensus 1448 ~~a~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1527 (1931)
.+|.++||+.||+..+-.. . ..
T Consensus 81 ~~a~~~gl~~~i~~~~~~~------------------------------------------------~----------~~ 102 (220)
T TIGR02191 81 EVARELGLGKFLLLGKGEE------------------------------------------------K----------SG 102 (220)
T ss_pred HHHHHCCcHHHhccCchHh------------------------------------------------h----------cC
Confidence 9999999999997543000 0 00
Q ss_pred cccccchhhhHHHHHhhheeeccCHHHHHHHHhHhh
Q 000174 1528 RVLSSKTLADVVEALIGVYYVEGGKDAANHLMKWIG 1563 (1931)
Q Consensus 1528 ~~~~~K~lADvvEALiGA~~l~~G~~~a~~~~~~l~ 1563 (1931)
....+|.+||+|||+|||+|+|+|.+.|..|+..+-
T Consensus 103 ~~~~~k~~ad~~eAliGAiyld~g~~~~~~~i~~~~ 138 (220)
T TIGR02191 103 GRRRESILADAFEALIGAIYLDSGLEAARKFILKLL 138 (220)
T ss_pred CcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 012468999999999999999999999999987653
|
This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family. |
| >KOG1817 consensus Ribonuclease [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-19 Score=206.36 Aligned_cols=131 Identities=31% Similarity=0.476 Sum_probs=110.2
Q ss_pred hhHHHHHHHcCCCcCCHHHHHHHhcCCCCCCC------------------------------------------------
Q 000174 1590 VDFHALEDALKIKFKDRGLLVEAITHASRPSS------------------------------------------------ 1621 (1931)
Q Consensus 1590 ~~~~~le~~lgy~F~~~~LL~~AlTH~S~~~~------------------------------------------------ 1621 (1931)
..+.-||+.|||+|+|+.||..||||||+..+
T Consensus 41 ~~l~~~e~~i~y~f~~r~~~~lal~h~s~~~~~Gt~~dh~kns~tncg~r~~~yg~~~~~~~~kr~~gin~li~imk~l~ 120 (533)
T KOG1817|consen 41 QSLDHLEELIGYTFQDRCLLQLALTHPSHKLNYGTNPDHAKNSLTNCGIRQPKYGDRKEHIMTKRKLGINTLINIMKRLG 120 (533)
T ss_pred HhHHHHHHHhCeeecchHHHHHHhcCchHHhhCCCCchhhhccccccCcCCcccchhHHHHHHHHHhhhhHHHHHHhhcc
Confidence 34788999999999999999999999997100
Q ss_pred -------CCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHHHHHHHHHcCchhhhccCCchhHHHH
Q 000174 1622 -------GVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQI 1694 (1931)
Q Consensus 1622 -------~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~La~~a~~~gl~~~l~~~~~~~~~~i 1694 (1931)
.+..+|||||||||+.+++.+.++|..+|...+|.|...|++.|.|..++.++.++.+..|+....+....
T Consensus 121 ~~~~~~s~i~hnErle~lgdavve~~ss~hl~~~~~r~~eggLatyrta~vqnr~la~lakklrkd~fl~yahg~dl~-- 198 (533)
T KOG1817|consen 121 VIQPTHSVIKHNERLEFLGDAVVELLSSNHLYFMFPRLEEGGLATYRTAIVQNRHLAKLAKKLRKDEFLLYAHGYDLC-- 198 (533)
T ss_pred CCCCchhHhHHHHHHHHHhhccHHHHHHHHHHHccccccccchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCcchh--
Confidence 02368999999999999999999999999999999999999999999999999999999998754432110
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCc
Q 000174 1695 RDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDT 1743 (1931)
Q Consensus 1695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~ 1743 (1931)
| ..+....+++.|||++||+|+|.|...
T Consensus 199 --~-------------------~~E~Kha~an~feavi~a~~l~g~~~~ 226 (533)
T KOG1817|consen 199 --F-------------------ETELKHAMANCFEAVIGAKYLDGGLVV 226 (533)
T ss_pred --h-------------------HHHHHHHHHHHHHHHhHHHHHhcchHH
Confidence 0 113356889999999999999998653
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=199.61 Aligned_cols=172 Identities=20% Similarity=0.234 Sum_probs=140.4
Q ss_pred chhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHH
Q 000174 292 KSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEV 370 (1931)
Q Consensus 292 ~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~ 370 (1931)
..+.+...++..|+++|.++++.+.+ +|++++++||+|||++|++++.+.+.... ...+.+++|++|+++|+.|+...
T Consensus 10 i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~-~~~~~~viii~p~~~L~~q~~~~ 88 (203)
T cd00268 10 LLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP-KKDGPQALILAPTRELALQIAEV 88 (203)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc-ccCCceEEEEcCCHHHHHHHHHH
Confidence 34667778999999999999999998 99999999999999999999877766421 13467899999999999999999
Q ss_pred HHHHc---CCcEEEEeCCCcccccchHHHHhhc-CCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHH
Q 000174 371 IREQT---GYVVGHYCGEMGQDFWDAQRWQREF-DTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSL 446 (1931)
Q Consensus 371 l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~-~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~ 446 (1931)
++.+. +..+..++|+..... +...+ .+++|+|+||+.|.+.+.++...+.+++++|+||||++.+ ..+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~-~~~~~ 162 (203)
T cd00268 89 ARKLGKHTNLKVVVIYGGTSIDK-----QIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLD-MGFED 162 (203)
T ss_pred HHHHhccCCceEEEEECCCCHHH-----HHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhc-cChHH
Confidence 98864 677888888765422 22222 4889999999999999988888889999999999999985 46777
Q ss_pred HHHHHHhhcCCCCCcEEEEEeecCCC
Q 000174 447 VMSEFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 447 im~~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
.+..+...... .++++++||||..
T Consensus 163 ~~~~~~~~l~~--~~~~~~~SAT~~~ 186 (203)
T cd00268 163 QIREILKLLPK--DRQTLLFSATMPK 186 (203)
T ss_pred HHHHHHHhCCc--ccEEEEEeccCCH
Confidence 77766665432 5889999999873
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3 | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-20 Score=192.52 Aligned_cols=114 Identities=46% Similarity=0.751 Sum_probs=90.4
Q ss_pred cchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHHHHHHHHcCCccceeccccCCCCccCCCCCCcccCCC
Q 000174 1403 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDT 1482 (1931)
Q Consensus 1403 ERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L~~~a~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~ 1482 (1931)
||||||||+||+++++.|||.+||++++|.||.+|+.+|||.+|+.+|.++||+.||+..+|++..|.+|... +.
T Consensus 1 ErLefLGDavL~~~v~~~l~~~~p~~~~~~L~~~r~~~vsn~~L~~~a~~~gl~~~l~~~~~~~~~~~~~~~~-----~~ 75 (114)
T PF00636_consen 1 ERLEFLGDAVLKLLVSEYLFEKYPNLNEGQLTKLRSALVSNKFLARLAVKLGLHKYLRQEPFEIQRWIKPFNE-----DL 75 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHSHHHHHHHHHHTTHGCTCBHHHHHHHHHHHCHHC-----C-
T ss_pred CcHhHhHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHHHHHHHHHHhCchHhhhccchhHHHHHHHHHH-----HH
Confidence 8999999999999999999999999999999999999999999999999999999999999888777655100 00
Q ss_pred cCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCCCCccccccchhhhHHHHHhhheeeccC
Q 000174 1483 KDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSSYRVLSSKTLADVVEALIGVYYVEGG 1551 (1931)
Q Consensus 1483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADvvEALiGA~~l~~G 1551 (1931)
.... ......... ..+...+|++||+|||||||+|+++|
T Consensus 76 ~~~~-----------------------------~~~~~~~~~-~~~~~~~k~laD~~EAliGAiyld~G 114 (114)
T PF00636_consen 76 NNGD-----------------------------SESSISYDP-KNQVLPPKVLADVFEALIGAIYLDSG 114 (114)
T ss_dssp -----------------------------------C-SSS---SSSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred Hhcc-----------------------------cccccCCCc-cccCCccHHHHHHHHHHHHHHHHhcC
Confidence 0000 000000011 14566799999999999999999998
|
1.26.3 from EC) (gene rnc) [] is an enzyme that digests double-stranded RNA. It is involved in the processing of ribosomal RNA precursors and of some mRNAs. RNase III is evolutionary related to a number of proteins including []: Saccharomyces cerevisiae (Baker's yeast) protein pac1, a ribonuclease that probably inhibits mating and meiosis by degrading a specific mRNA required for sexual development yeast ribonuclease III (gene RNT1), a dsRNA-specific nuclease that cleaves eukaryotic preribosomal RNA at various sites Caenorhabditis elegans hypothetical protein F26E4.13 Paramecium bursaria Chlorella virus 1 (PBCV-1) 1 protein A464R Synechocystis sp. (strain PCC 6803) hypothetical protein slr0346 yeast hypothetical protein SpAC8A4.08c, a protein with a N-terminal helicase domain and a C-terminal RNase III domain C. elegans hypothetical protein K12H4.8, a protein with the same structure as SpAC8A4.08c ; GO: 0003723 RNA binding, 0004525 ribonuclease III activity, 0006396 RNA processing; PDB: 2GSL_A 2NUE_B 1YYO_A 2NUF_A 1YZ9_A 1JFZ_A 1YYW_C 1RC5_B 1YYK_B 1RC7_A .... |
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-18 Score=190.86 Aligned_cols=159 Identities=22% Similarity=0.295 Sum_probs=129.2
Q ss_pred cHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcC---CcEE
Q 000174 305 RPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG---YVVG 380 (1931)
Q Consensus 305 ~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~---l~v~ 380 (1931)
||+|.++++.+.+ +++++.+|||+|||+++++++...+.. ++..++++++|+++|+.|+.+.+..++. +++.
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~----~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 76 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQE----GKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVV 76 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHT----TSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhcc----CCCceEEEEeecccccccccccccccccccccccc
Confidence 6899999999997 889999999999999999998876653 2345899999999999999999999874 5888
Q ss_pred EEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCC
Q 000174 381 HYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKR 460 (1931)
Q Consensus 381 ~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~ 460 (1931)
.++|+...... ...| ...+++|+|+||+.|.+.+.++...+.++++|||||+|++... .|...+..+.........
T Consensus 77 ~~~~~~~~~~~-~~~~--~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~-~~~~~~~~i~~~~~~~~~ 152 (169)
T PF00270_consen 77 LLHGGQSISED-QREV--LSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDE-TFRAMLKSILRRLKRFKN 152 (169)
T ss_dssp EESTTSCHHHH-HHHH--HHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHT-THHHHHHHHHHHSHTTTT
T ss_pred ccccccccccc-cccc--ccccccccccCcchhhccccccccccccceeeccCcccccccc-cHHHHHHHHHHHhcCCCC
Confidence 88887653211 1111 1357999999999999999886667888999999999999985 677777777666544445
Q ss_pred cEEEEEeecCC
Q 000174 461 PSVFGMTASPV 471 (1931)
Q Consensus 461 p~iLgLTATP~ 471 (1931)
+++++|||||.
T Consensus 153 ~~~i~~SAT~~ 163 (169)
T PF00270_consen 153 IQIILLSATLP 163 (169)
T ss_dssp SEEEEEESSST
T ss_pred CcEEEEeeCCC
Confidence 88999999986
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-17 Score=212.13 Aligned_cols=121 Identities=16% Similarity=0.168 Sum_probs=104.0
Q ss_pred CHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCce
Q 000174 703 TPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVT 782 (1931)
Q Consensus 703 s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~ 782 (1931)
..|...+++.+.+. +..+..+||||+++..++.|+++|.. .+++...+|| . +.+|+..+.+|+.+...
T Consensus 413 ~~K~~aI~~~I~~~-~~~grpVLIft~Si~~se~Ls~~L~~----~gi~~~vLna-----k--q~eREa~Iia~Ag~~g~ 480 (830)
T PRK12904 413 KEKFDAVVEDIKER-HKKGQPVLVGTVSIEKSELLSKLLKK----AGIPHNVLNA-----K--NHEREAEIIAQAGRPGA 480 (830)
T ss_pred HHHHHHHHHHHHHH-HhcCCCEEEEeCcHHHHHHHHHHHHH----CCCceEeccC-----c--hHHHHHHHHHhcCCCce
Confidence 46888898888764 34577899999999999999999998 6899999999 4 67899999999999999
Q ss_pred EEEEecccccCCCCCCC--------------------------------------CEEEEcCCCCCHHHHHHhhccCCCC
Q 000174 783 LLVATSVAEEGLDIRQC--------------------------------------NVVIRFDLAKTVLAYIQSRGRARKP 824 (1931)
Q Consensus 783 vLVaTdVaeeGlDip~~--------------------------------------~lVI~fD~p~s~~~yiQr~GRa~R~ 824 (1931)
|+|||++|+||+||+-- =+||--..|.|.+-.-|-+|||||.
T Consensus 481 VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQ 560 (830)
T PRK12904 481 VTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQ 560 (830)
T ss_pred EEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccC
Confidence 99999999999999874 1688888999999999999999999
Q ss_pred CCc--EEEEEecC
Q 000174 825 GSD--YILMIERG 835 (1931)
Q Consensus 825 Gs~--~ivlv~~~ 835 (1931)
|.. ..+++.-+
T Consensus 561 GdpGss~f~lSle 573 (830)
T PRK12904 561 GDPGSSRFYLSLE 573 (830)
T ss_pred CCCCceeEEEEcC
Confidence 866 34444433
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.2e-18 Score=218.29 Aligned_cols=122 Identities=17% Similarity=0.206 Sum_probs=105.5
Q ss_pred CHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCce
Q 000174 703 TPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVT 782 (1931)
Q Consensus 703 s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~ 782 (1931)
..|...+++.+... +..+..+||||+++..++.|+.+|.+ .+++...+|| .+.++++.-+.++++.|.
T Consensus 423 ~~K~~al~~~i~~~-~~~g~pvLI~t~si~~se~ls~~L~~----~gi~~~~Lna-----~~~~~Ea~ii~~ag~~g~-- 490 (796)
T PRK12906 423 DSKFNAVVKEIKER-HAKGQPVLVGTVAIESSERLSHLLDE----AGIPHAVLNA-----KNHAKEAEIIMNAGQRGA-- 490 (796)
T ss_pred HHHHHHHHHHHHHH-HhCCCCEEEEeCcHHHHHHHHHHHHH----CCCCeeEecC-----CcHHHHHHHHHhcCCCce--
Confidence 46888888888765 35678899999999999999999998 6899999999 777777777777777776
Q ss_pred EEEEecccccCCCCC---CCC-----EEEEcCCCCCHHHHHHhhccCCCCCCcE--EEEEecCC
Q 000174 783 LLVATSVAEEGLDIR---QCN-----VVIRFDLAKTVLAYIQSRGRARKPGSDY--ILMIERGN 836 (1931)
Q Consensus 783 vLVaTdVaeeGlDip---~~~-----lVI~fD~p~s~~~yiQr~GRa~R~Gs~~--ivlv~~~~ 836 (1931)
|+|||++|+||+||+ +|. +||++++|.|.+.|.|++|||||.|..+ .+++.-++
T Consensus 491 VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 491 VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccc
Confidence 999999999999995 899 9999999999999999999999999883 55555443
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6e-16 Score=216.69 Aligned_cols=442 Identities=18% Similarity=0.154 Sum_probs=247.8
Q ss_pred CCCCCCcHHHHHHHHHHh-c-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH
Q 000174 299 MPEEQARPYQLDVLEQAK-K-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR 372 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l-~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~ 372 (1931)
.....+++||.+++.++. . .+.|+++++|.|||++.+..+.+..... ....++++++||+ +++.+|.+++.
T Consensus 334 ~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~--~~~~~~~liv~p~-s~~~nw~~e~~ 410 (866)
T COG0553 334 DLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESI--KVYLGPALIVVPA-SLLSNWKREFE 410 (866)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcc--cCCCCCeEEEecH-HHHHHHHHHHh
Confidence 334679999999999966 2 6789999999999999999877633321 1113579999997 67788999998
Q ss_pred HHc-CCc-EEEEeCCCcccccchHHHHhhcCC-----ccEEEEcHHHHHHHH-hcccccccceeEEEEeCCCcccCCCcH
Q 000174 373 EQT-GYV-VGHYCGEMGQDFWDAQRWQREFDT-----KQVLVMTAQILLNIL-RHSIIKMEAINLLILDECHHAVKKHPY 444 (1931)
Q Consensus 373 ~~~-~l~-v~~~~G~~~~~~~~~~~w~~~~~~-----~~IlV~Tpq~L~d~L-~~~~l~l~~i~lLV~DEaH~~~~~~~~ 444 (1931)
++. .++ +..++|....-..+.......+.. .+|+++|++.|...+ .++.+.-..|+.+|+||||++.+..+-
T Consensus 411 k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s~ 490 (866)
T COG0553 411 KFAPDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSS 490 (866)
T ss_pred hhCccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhhH
Confidence 876 466 777888654200012222222222 799999999998742 344567788999999999998764322
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCC----eEEEecchHHHhhhCCCCceeEEEe
Q 000174 445 SLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDS----VVCTIKDRKELEKHVPMPSEVVVEY 520 (1931)
Q Consensus 445 ~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~----~i~t~~~~~~l~~~~~~p~e~~~~y 520 (1931)
.. +.+.. . .....+.||+||.. +.+..|+++++. ..... ....+......|.......
T Consensus 491 ~~--~~l~~-~---~~~~~~~LtgTPle-----------n~l~eL~sl~~~f~~p~~~~~-~~~~f~~~~~~~~~~~~~~ 552 (866)
T COG0553 491 EG--KALQF-L---KALNRLDLTGTPLE-----------NRLGELWSLLQEFLNPGLLGT-SFAIFTRLFEKPIQAEEDI 552 (866)
T ss_pred HH--HHHHH-H---hhcceeeCCCChHh-----------hhHHHHHHHHHHHhCCccccc-hHHHHHHHHhhhhhhcccc
Confidence 11 11211 1 12446999999952 245555555552 22111 1233444444443332221
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccch--hhHHHHHHHHHHHHHHHH
Q 000174 521 DKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESD--GAANLIQKLRAINYALGE 598 (1931)
Q Consensus 521 ~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~--~~~~l~~~~~~~~~~l~~ 598 (1931)
... ......+..+...+.++ ..+|.+.+ ....+..+.....++...
T Consensus 553 ~~~---~~~~~~~~~l~~~i~~f-----------------------------~lrr~k~~~~v~~~Lp~k~e~~~~~~l~ 600 (866)
T COG0553 553 GPL---EARELGIELLRKLLSPF-----------------------------ILRRTKEDVEVLKELPPKIEKVLECELS 600 (866)
T ss_pred cch---hhHHHHHHHHHHHHHHH-----------------------------hhcccccchhHHHhCChhhhhhhhhccc
Confidence 110 00000111111111111 12233333 333444444333333221
Q ss_pred HhHHHHHHHHHHH----HHHhhhhhhhhh--------hhhHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccc
Q 000174 599 LGQWCAYKVAQSF----LTALQNDERANY--------QLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVE 666 (1931)
Q Consensus 599 lg~~~a~~~~~~~----l~~l~~~~~~~~--------~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~ 666 (1931)
-.+-..+...... ...+........ ..........++++|+.-. +.........
T Consensus 601 ~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~~~~p~--------------l~~~~~~~~~ 666 (866)
T COG0553 601 EEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQICNHPA--------------LVDEGLEATF 666 (866)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHhccCcc--------------cccccccccc
Confidence 1111111111100 000000000000 0000000011111111000 0000000000
Q ss_pred CC-ccccccccccccccccCCCchhhhhhhcccCCCCC-HHHHHHHHHH-HHhcCCCCc--eEEEEEeehhHHHHHHHHH
Q 000174 667 GG-TNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVT-PKVQSLIKIL-LKYQHTEDF--RAIIFVERVVAALVLPKVF 741 (1931)
Q Consensus 667 ~~-~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s-~Kv~~Li~lL-~~~~~~~~~--k~IIFv~~r~ta~~L~~~L 741 (1931)
.. ....... .. ... ..-.....+ .|+..+.++| ... ...+. ++|||++...+.+.+...|
T Consensus 667 ~~~~~~~~~~--~~--~~~----------~~~~~~~~s~~k~~~l~~ll~~~~-~~~~~~~kvlifsq~t~~l~il~~~l 731 (866)
T COG0553 667 DRIVLLLRED--KD--FDY----------LKKPLIQLSKGKLQALDELLLDKL-LEEGHYHKVLIFSQFTPVLDLLEDYL 731 (866)
T ss_pred chhhhhhhcc--cc--ccc----------ccchhhhccchHHHHHHHHHHHHH-HhhcccccEEEEeCcHHHHHHHHHHH
Confidence 00 0000000 00 000 000011234 7899998888 444 23455 9999999999999999999
Q ss_pred hcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcC--CceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhc
Q 000174 742 AELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDG--RVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRG 819 (1931)
Q Consensus 742 ~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G--~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~G 819 (1931)
.. .++....++| +++..+|+.++++|.++ ..-+|++|.+++.|||+..+++||.||+.||+....|+..
T Consensus 732 ~~----~~~~~~~ldG-----~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~d 802 (866)
T COG0553 732 KA----LGIKYVRLDG-----STPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAID 802 (866)
T ss_pred Hh----cCCcEEEEeC-----CCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHH
Confidence 98 4478999999 88899999999999986 4457888899999999999999999999999999999999
Q ss_pred cCCCCCCcEEEE
Q 000174 820 RARKPGSDYILM 831 (1931)
Q Consensus 820 Ra~R~Gs~~ivl 831 (1931)
|++|.|++-.+.
T Consensus 803 Ra~RigQ~~~v~ 814 (866)
T COG0553 803 RAHRIGQKRPVK 814 (866)
T ss_pred HHHHhcCcceeE
Confidence 999999984333
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-15 Score=197.08 Aligned_cols=121 Identities=23% Similarity=0.297 Sum_probs=107.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCc
Q 000174 702 VTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRV 781 (1931)
Q Consensus 702 ~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~ 781 (1931)
...++..|++.|..+ ...+.++||||+++..++.|++.|.+ .++++..+|| ++++.+|.+++++|+.|++
T Consensus 424 ~~~qi~~Ll~eI~~~-~~~g~~vLIf~~tk~~ae~L~~~L~~----~gi~~~~lh~-----~~~~~eR~~~l~~fr~G~i 493 (655)
T TIGR00631 424 TDGQVDDLLSEIRQR-VARNERVLVTTLTKKMAEDLTDYLKE----LGIKVRYLHS-----EIDTLERVEIIRDLRLGEF 493 (655)
T ss_pred ccchHHHHHHHHHHH-HcCCCEEEEEECCHHHHHHHHHHHhh----hccceeeeeC-----CCCHHHHHHHHHHHhcCCc
Confidence 345777888888776 35678999999999999999999998 5789999999 9999999999999999999
Q ss_pred eEEEEecccccCCCCCCCCEEEEcC-----CCCCHHHHHHhhccCCCCCCcEEEEE
Q 000174 782 TLLVATSVAEEGLDIRQCNVVIRFD-----LAKTVLAYIQSRGRARKPGSDYILMI 832 (1931)
Q Consensus 782 ~vLVaTdVaeeGlDip~~~lVI~fD-----~p~s~~~yiQr~GRa~R~Gs~~ivlv 832 (1931)
.|||||+++++|+|+|++++||++| .|.+..+|+||+|||||....-++++
T Consensus 494 ~VLV~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~ 549 (655)
T TIGR00631 494 DVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMY 549 (655)
T ss_pred eEEEEcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEE
Confidence 9999999999999999999999999 79999999999999999854433333
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.1e-16 Score=199.77 Aligned_cols=131 Identities=21% Similarity=0.198 Sum_probs=108.3
Q ss_pred cCCCCCC---cHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH
Q 000174 298 KMPEEQA---RPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE 373 (1931)
Q Consensus 298 ~~~~~~~---~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~ 373 (1931)
..|+..| +|||.++++.++. +++|+.++||+|||++|++|+...+.. +..++||+||++||.|.++.+..
T Consensus 84 ~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~------g~~v~IVTpTrELA~Qdae~m~~ 157 (970)
T PRK12899 84 VSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT------GKPVHLVTVNDYLAQRDCEWVGS 157 (970)
T ss_pred cccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh------cCCeEEEeCCHHHHHHHHHHHHH
Confidence 5677777 9999999999988 899999999999999999998865532 22489999999999999888876
Q ss_pred H---cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHH-HHHHhccccccc-------ceeEEEEeCCCcccC
Q 000174 374 Q---TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQIL-LNILRHSIIKME-------AINLLILDECHHAVK 440 (1931)
Q Consensus 374 ~---~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L-~d~L~~~~l~l~-------~i~lLV~DEaH~~~~ 440 (1931)
+ +|++++.++|++..... ... -.++|+|+||++| +|+++.+.+.++ .+.++|+||||+++-
T Consensus 158 L~k~lGLsV~~i~GG~~~~eq-----~~~-y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 158 VLRWLGLTTGVLVSGSPLEKR-----KEI-YQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred HHhhcCCeEEEEeCCCCHHHH-----HHH-cCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhhh
Confidence 4 58999999998765321 112 2699999999999 999998766555 458999999999974
|
|
| >cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-17 Score=171.24 Aligned_cols=120 Identities=44% Similarity=0.775 Sum_probs=103.8
Q ss_pred ccccccccccCCccccCCcEEEcccCCCeEEEEeeccCCCCCCCCCCCCCCCCCCccccHHHHHHhhcCccccCCCCceE
Q 000174 1220 TGKLMMADSCANAGDLEGRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLI 1299 (1931)
Q Consensus 1220 ~~~~~~~~~~~~~~~l~~~vv~~~~~~~~y~v~~v~~dltp~s~fp~~~g~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL 1299 (1931)
.+.+.++|+++..++|.|.+|.++|+++.|.|.+|. +++|.|+||..+|. .+.||++||+++||++|.+++||||
T Consensus 16 ~~~l~~~~~~~~~~~l~g~~V~t~hn~r~Y~I~~i~-~~~p~s~F~~~~~~----~~~Sy~eYy~~kY~i~L~~~~QPLL 90 (135)
T cd02844 16 SDLLHLADGSFCACDLKGSVVTAPHNGRFYVISGIL-DLNANSSFPGKEGL----GYATYAEYFKEKYGIVLNHPNQPLL 90 (135)
T ss_pred cceeeeccCcccHHHhcCCEEEEcCCCcEEEEEEEc-CCCccCcccCCCCC----ceeeHHHHHHHHhCceeccCCcceE
Confidence 456899999999999999999999999999999999 99999999876541 4689999999999999999999999
Q ss_pred EeeccccccccCCCccccccccccccccccccceEEEcCCcccccccCC
Q 000174 1300 RGRGVSYCKNLLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHPLP 1348 (1931)
Q Consensus 1300 ~~~~~~~~~n~l~~~~~~~~~~~~~~~~~~~k~~~~~L~Pelc~v~~lp 1348 (1931)
+++.++.++|+|+|+...+.. ........+.++||||+|.++++|
T Consensus 91 ~~~~~~~~~NlL~~~~~~~~~----~~~~~~~~~~v~L~PELC~~~~~p 135 (135)
T cd02844 91 KGKQIFNLHNLLHNRFEEKGE----SEEKEKDRYFVELPPELCSVIDLP 135 (135)
T ss_pred EEecccccceecccccccccc----cccccccceEEEeChHHhccccCC
Confidence 999999999999999875321 112233456789999999999987
|
CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. |
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.6e-16 Score=201.20 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCc
Q 000174 702 VTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRV 781 (1931)
Q Consensus 702 ~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~ 781 (1931)
...|..++++.+.+. +..+..+||||.++..++.|+.+|.. .+++...+|+ .+.+.++..+.+.|+.|.
T Consensus 431 ~~~K~~Aii~ei~~~-~~~GrpVLV~t~sv~~se~ls~~L~~----~gi~~~vLna-----k~~~~Ea~ii~~Ag~~G~- 499 (908)
T PRK13107 431 ADEKYQAIIKDIKDC-RERGQPVLVGTVSIEQSELLARLMVK----EKIPHEVLNA-----KFHEREAEIVAQAGRTGA- 499 (908)
T ss_pred HHHHHHHHHHHHHHH-HHcCCCEEEEeCcHHHHHHHHHHHHH----CCCCeEeccC-----cccHHHHHHHHhCCCCCc-
Confidence 356888888877765 45688899999999999999999998 7899999999 889999999999999998
Q ss_pred eEEEEecccccCCCCCCC-------------------------------------CEEEEcCCCCCHHHHHHhhccCCCC
Q 000174 782 TLLVATSVAEEGLDIRQC-------------------------------------NVVIRFDLAKTVLAYIQSRGRARKP 824 (1931)
Q Consensus 782 ~vLVaTdVaeeGlDip~~-------------------------------------~lVI~fD~p~s~~~yiQr~GRa~R~ 824 (1931)
|+|||++|+||+||.=- =+||--..+.|.+---|-+|||||.
T Consensus 500 -VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQ 578 (908)
T PRK13107 500 -VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQ 578 (908)
T ss_pred -EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccC
Confidence 99999999999999732 2688889999999999999999998
Q ss_pred CCc
Q 000174 825 GSD 827 (1931)
Q Consensus 825 Gs~ 827 (1931)
|..
T Consensus 579 GDP 581 (908)
T PRK13107 579 GDA 581 (908)
T ss_pred CCC
Confidence 865
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.4e-16 Score=200.20 Aligned_cols=152 Identities=22% Similarity=0.289 Sum_probs=124.7
Q ss_pred CCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCc-
Q 000174 301 EEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYV- 378 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~- 378 (1931)
.+.|-++|++++..+.. .+++++++||+|||+++-.+|...+.. +.++++.+|.++|.+|-+..|...++--
T Consensus 117 ~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~------~qrviYTsPIKALsNQKyrdl~~~fgdv~ 190 (1041)
T COG4581 117 PFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD------GQRVIYTSPIKALSNQKYRDLLAKFGDVA 190 (1041)
T ss_pred CCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc------CCceEeccchhhhhhhHHHHHHHHhhhhh
Confidence 46799999999999988 899999999999999999988766552 4559999999999999999999887633
Q ss_pred --EEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcC
Q 000174 379 --VGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTS 456 (1931)
Q Consensus 379 --v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~ 456 (1931)
+++++|+..++ .++.|+|||.++|.+++.++...+..+..|||||+|-+.+. .-.-+-.+.+..+|
T Consensus 191 ~~vGL~TGDv~IN-----------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~-eRG~VWEE~Ii~lP 258 (1041)
T COG4581 191 DMVGLMTGDVSIN-----------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDR-ERGVVWEEVIILLP 258 (1041)
T ss_pred hhccceecceeeC-----------CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeecccc-ccchhHHHHHHhcC
Confidence 78899987653 57889999999999999999888999999999999999863 22233334444444
Q ss_pred CCCCcEEEEEeecCCC
Q 000174 457 KEKRPSVFGMTASPVN 472 (1931)
Q Consensus 457 ~~~~p~iLgLTATP~~ 472 (1931)
. ..++++||||..+
T Consensus 259 ~--~v~~v~LSATv~N 272 (1041)
T COG4581 259 D--HVRFVFLSATVPN 272 (1041)
T ss_pred C--CCcEEEEeCCCCC
Confidence 3 3679999999764
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-17 Score=202.24 Aligned_cols=173 Identities=20% Similarity=0.236 Sum_probs=118.8
Q ss_pred chhhhhcCCCCCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHH
Q 000174 292 KSEAKEKMPEEQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQ 366 (1931)
Q Consensus 292 ~~~~l~~~~~~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q 366 (1931)
....+.-....+|||||++|+..+++ ...=+.|..|+|||+.++-+...+.. .++|||||+..|..|
T Consensus 150 ~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~--------~~iL~LvPSIsLLsQ 221 (1518)
T COG4889 150 LQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA--------ARILFLVPSISLLSQ 221 (1518)
T ss_pred cccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh--------hheEeecchHHHHHH
Confidence 33455556678999999999999987 34556678899999999987665533 679999999999999
Q ss_pred HHHHHHHHc--CCcEEEEeCCCcccccc-------------------hHHHHhhc--CCccEEEEcHHHHHHHHhccccc
Q 000174 367 QAEVIREQT--GYVVGHYCGEMGQDFWD-------------------AQRWQREF--DTKQVLVMTAQILLNILRHSIIK 423 (1931)
Q Consensus 367 ~~~~l~~~~--~l~v~~~~G~~~~~~~~-------------------~~~w~~~~--~~~~IlV~Tpq~L~d~L~~~~l~ 423 (1931)
..++..... +++...+|++..+.... ...|.... .+--||++|+|.+...-.....-
T Consensus 222 Tlrew~~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G 301 (1518)
T COG4889 222 TLREWTAQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAG 301 (1518)
T ss_pred HHHHHhhccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcC
Confidence 988887653 66667777765432210 11233222 25569999999998765555567
Q ss_pred ccceeEEEEeCCCcccCCCcHHHHHHHHHhhcC--CCCCcEEEEEeecCCC
Q 000174 424 MEAINLLILDECHHAVKKHPYSLVMSEFYHTTS--KEKRPSVFGMTASPVN 472 (1931)
Q Consensus 424 l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~--~~~~p~iLgLTATP~~ 472 (1931)
+..++|||.|||||..+-+--...-..|..... .....++|-|||||--
T Consensus 302 ~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPki 352 (1518)
T COG4889 302 LDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKI 352 (1518)
T ss_pred CCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchh
Confidence 889999999999998863211111122222111 1122567999999973
|
|
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-15 Score=192.88 Aligned_cols=177 Identities=21% Similarity=0.262 Sum_probs=126.1
Q ss_pred hhcCCCCCCcHHHHHHHHH--Hhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH
Q 000174 296 KEKMPEEQARPYQLDVLEQ--AKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR 372 (1931)
Q Consensus 296 l~~~~~~~~~~~Q~eai~~--~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~ 372 (1931)
....|..+++.+|.+++.. +++ +|.|..+||+.|||+++-++++...... ++.++++.|-+..+..-...+.
T Consensus 216 ~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-----rr~~llilp~vsiv~Ek~~~l~ 290 (1008)
T KOG0950|consen 216 AKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-----RRNVLLILPYVSIVQEKISALS 290 (1008)
T ss_pred HHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-----hhceeEecceeehhHHHHhhhh
Confidence 4456788999999999754 566 9999999999999999988765444322 4569999998887776666666
Q ss_pred HHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcc--cccccceeEEEEeCCCcccCCCcHHHH
Q 000174 373 EQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS--IIKMEAINLLILDECHHAVKKHPYSLV 447 (1931)
Q Consensus 373 ~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~--~l~l~~i~lLV~DEaH~~~~~~~~~~i 447 (1931)
.+. |++|..+.|.-.... .++.-.|.|||.+.-..++..- .-.+..+++||+||-|.+.+.+ -..+
T Consensus 291 ~~~~~~G~~ve~y~g~~~p~~--------~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~-rg~~ 361 (1008)
T KOG0950|consen 291 PFSIDLGFPVEEYAGRFPPEK--------RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKG-RGAI 361 (1008)
T ss_pred hhccccCCcchhhcccCCCCC--------cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccc-cchH
Confidence 653 899999887655432 2356789999999866544331 1357789999999999998753 2333
Q ss_pred HHHH----HhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEe
Q 000174 448 MSEF----YHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTI 500 (1931)
Q Consensus 448 m~~~----~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~ 500 (1931)
+..+ .-... ....+++|||||..| +..|+..+++.+++.
T Consensus 362 lE~~l~k~~y~~~-~~~~~iIGMSATi~N-------------~~lL~~~L~A~~y~t 404 (1008)
T KOG0950|consen 362 LELLLAKILYENL-ETSVQIIGMSATIPN-------------NSLLQDWLDAFVYTT 404 (1008)
T ss_pred HHHHHHHHHHhcc-ccceeEeeeecccCC-------------hHHHHHHhhhhheec
Confidence 3333 22222 223779999999764 456777888777765
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.6e-14 Score=185.26 Aligned_cols=115 Identities=24% Similarity=0.284 Sum_probs=104.1
Q ss_pred CHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCce
Q 000174 703 TPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVT 782 (1931)
Q Consensus 703 s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~ 782 (1931)
..++..|++.|..+ ...+.++||||+++..++.|.+.|.. .++++..+|| ++++.+|.+++++|+.|++.
T Consensus 429 ~~q~~~L~~~L~~~-~~~g~~viIf~~t~~~ae~L~~~L~~----~gi~~~~~h~-----~~~~~~R~~~l~~f~~g~i~ 498 (652)
T PRK05298 429 KGQVDDLLSEIRKR-VAKGERVLVTTLTKRMAEDLTDYLKE----LGIKVRYLHS-----DIDTLERVEIIRDLRLGEFD 498 (652)
T ss_pred cccHHHHHHHHHHH-HhCCCEEEEEeCCHHHHHHHHHHHhh----cceeEEEEEC-----CCCHHHHHHHHHHHHcCCce
Confidence 45677888888776 34678999999999999999999998 6789999999 99999999999999999999
Q ss_pred EEEEecccccCCCCCCCCEEEEcCC-----CCCHHHHHHhhccCCCCCCc
Q 000174 783 LLVATSVAEEGLDIRQCNVVIRFDL-----AKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 783 vLVaTdVaeeGlDip~~~lVI~fD~-----p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
|||||+++++|+|+|++++||++|. |.+..+|+||+|||||....
T Consensus 499 vlV~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~~~G 548 (652)
T PRK05298 499 VLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG 548 (652)
T ss_pred EEEEeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCCCCC
Confidence 9999999999999999999999986 78999999999999996443
|
|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-14 Score=181.73 Aligned_cols=151 Identities=20% Similarity=0.268 Sum_probs=120.5
Q ss_pred CCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcE
Q 000174 301 EEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVV 379 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v 379 (1931)
.++|-.+|++||..+.+ ..++|+|.|.+|||++|-.+|.-. + ....++++-+|-++|-+|-++.|+..++- |
T Consensus 295 pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala-q-----~h~TR~iYTSPIKALSNQKfRDFk~tF~D-v 367 (1248)
T KOG0947|consen 295 PFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA-Q-----KHMTRTIYTSPIKALSNQKFRDFKETFGD-V 367 (1248)
T ss_pred CCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH-H-----hhccceEecchhhhhccchHHHHHHhccc-c
Confidence 46788999999999988 789999999999999988766422 1 23578999999999999999999997753 5
Q ss_pred EEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCC
Q 000174 380 GHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEK 459 (1931)
Q Consensus 380 ~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~ 459 (1931)
++++|+.... ..+.++|||.++|.++|.+|.--+.++.+|||||+|-+-+. .-..+..+.+-.+|.
T Consensus 368 gLlTGDvqin-----------PeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~-eRGvVWEEViIMlP~-- 433 (1248)
T KOG0947|consen 368 GLLTGDVQIN-----------PEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDV-ERGVVWEEVIIMLPR-- 433 (1248)
T ss_pred ceeecceeeC-----------CCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccc-cccccceeeeeeccc--
Confidence 5889986542 57889999999999999998888899999999999988652 222333344444443
Q ss_pred CcEEEEEeecCCC
Q 000174 460 RPSVFGMTASPVN 472 (1931)
Q Consensus 460 ~p~iLgLTATP~~ 472 (1931)
+.++++||||..|
T Consensus 434 HV~~IlLSATVPN 446 (1248)
T KOG0947|consen 434 HVNFILLSATVPN 446 (1248)
T ss_pred cceEEEEeccCCC
Confidence 4789999999654
|
|
| >KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.8e-15 Score=181.30 Aligned_cols=123 Identities=18% Similarity=0.169 Sum_probs=104.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCC------------------CCCceeEEEEccCCC
Q 000174 700 GKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPS------------------LSFVKSASLIGHNNS 761 (1931)
Q Consensus 700 ~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~------------------l~~~~~~~l~G~~~~ 761 (1931)
...|+|+..|+++|... ..-+.|.|||.++..+.+.+..+|...+. +.|.....|.|
T Consensus 1122 ~~~SgKmiLLleIL~mc-eeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDG---- 1196 (1567)
T KOG1015|consen 1122 LEHSGKMILLLEILRMC-EEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDG---- 1196 (1567)
T ss_pred hhcCcceehHHHHHHHH-HHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecC----
Confidence 35689999999999876 34578999999999999999999986532 12344566666
Q ss_pred ccccHHHHHHHHHHhhcCC---ce-EEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE
Q 000174 762 QEMRTFQMQETIAKFRDGR---VT-LLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY 828 (1931)
Q Consensus 762 ~~~~~~~R~~~l~~Fr~G~---~~-vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ 828 (1931)
..+..+|+...++|++-. .+ .||+|.+++-|||+-++|.||.||..|||.-.+|++=|+.|.|+.-
T Consensus 1197 -st~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtK 1266 (1567)
T KOG1015|consen 1197 -STTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTK 1266 (1567)
T ss_pred -cccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcC
Confidence 788899999999999542 22 8999999999999999999999999999999999999999999983
|
|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-15 Score=169.42 Aligned_cols=153 Identities=21% Similarity=0.337 Sum_probs=107.4
Q ss_pred CCCcHHHHHHHHHHhc--------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH
Q 000174 302 EQARPYQLDVLEQAKK--------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE 373 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~--------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~ 373 (1931)
.+||+||.+++..+.+ +++++.++||||||++++.++.++.. +++|+||+..|+.||.+.+..
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~---------~~l~~~p~~~l~~Q~~~~~~~ 72 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR---------KVLIVAPNISLLEQWYDEFDD 72 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC---------EEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc---------ceeEecCHHHHHHHHHHHHHH
Confidence 4689999999999983 67899999999999999987766543 799999999999999999976
Q ss_pred HcCCcEEEEeCCCc----------ccccchHHHHhhcCCccEEEEcHHHHHHHHhcc-----------cccccceeEEEE
Q 000174 374 QTGYVVGHYCGEMG----------QDFWDAQRWQREFDTKQVLVMTAQILLNILRHS-----------IIKMEAINLLIL 432 (1931)
Q Consensus 374 ~~~l~v~~~~G~~~----------~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~-----------~l~l~~i~lLV~ 432 (1931)
+..-.......... ........-.......+|+++|++.|....... .......++||+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~ 152 (184)
T PF04851_consen 73 FGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVII 152 (184)
T ss_dssp HSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEE
T ss_pred hhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEE
Confidence 65433322211100 000011111223458899999999999876531 134567889999
Q ss_pred eCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 433 DECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 433 DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
|||||+.....|..++. ...+.+|+|||||.
T Consensus 153 DEaH~~~~~~~~~~i~~--------~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 153 DEAHHYPSDSSYREIIE--------FKAAFILGLTATPF 183 (184)
T ss_dssp ETGGCTHHHHHHHHHHH--------SSCCEEEEEESS-S
T ss_pred ehhhhcCCHHHHHHHHc--------CCCCeEEEEEeCcc
Confidence 99999988644777766 23478999999996
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-15 Score=196.84 Aligned_cols=375 Identities=12% Similarity=0.066 Sum_probs=224.8
Q ss_pred eCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcC-CcEEEEeCCCcccccchHHHHhhcCC
Q 000174 324 LETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG-YVVGHYCGEMGQDFWDAQRWQREFDT 402 (1931)
Q Consensus 324 ~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~-l~v~~~~G~~~~~~~~~~~w~~~~~~ 402 (1931)
+-+|||||.+|+-+|...+.. ++.+|||+|++.|+.|+.+.|+..++ ..+.++|++.+... +...|.+...+
T Consensus 167 ~~~GSGKTevyl~~i~~~l~~------Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~-R~~~w~~~~~G 239 (665)
T PRK14873 167 ALPGEDWARRLAAAAAATLRA------GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPAD-RYRRWLAVLRG 239 (665)
T ss_pred cCCCCcHHHHHHHHHHHHHHc------CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHH-HHHHHHHHhCC
Confidence 336999999999999988873 56799999999999999999999997 88999999877543 66789888764
Q ss_pred -ccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC---CCcHH--HHHHHHHhhcCCCCCcEEEEEeecCCCCCCC
Q 000174 403 -KQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK---KHPYS--LVMSEFYHTTSKEKRPSVFGMTASPVNLKGV 476 (1931)
Q Consensus 403 -~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~---~~~~~--~im~~~~~~~~~~~~p~iLgLTATP~~~~~~ 476 (1931)
.+|||+|...++ ..+.++++||+||-|.-.- ..+|. ..+..+.. ......+++.||||.-
T Consensus 240 ~~~IViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra---~~~~~~lvLgSaTPSl---- 305 (665)
T PRK14873 240 QARVVVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRA---HQHGCALLIGGHARTA---- 305 (665)
T ss_pred CCcEEEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHH---HHcCCcEEEECCCCCH----
Confidence 789999999887 7899999999999997651 12331 11211111 1123557888999962
Q ss_pred CchhHHHHHHHHHHHhcCCeEEEec-chHHHhhhCCCCceeEEEecc-------c----hhhhHHHHHHHHHHHHHHHHH
Q 000174 477 SSQVDCAIKICNLESKLDSVVCTIK-DRKELEKHVPMPSEVVVEYDK-------A----ASLWSLHEQLKQMEVAVEEAA 544 (1931)
Q Consensus 477 ~~~~~~~~~l~~Le~~l~~~i~t~~-~~~~l~~~~~~p~e~~~~y~~-------~----~~~~~l~~~i~~l~~~~~~~~ 544 (1931)
..+............ ..... ....|...++.... . .....+.+.+++....- +.+
T Consensus 306 ----------es~~~~~~g~~~~~~~~~~~~--~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvl 372 (665)
T PRK14873 306 ----------EAQALVESGWAHDLVAPRPVV--RARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVL 372 (665)
T ss_pred ----------HHHHHHhcCcceeeccccccc--cCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEE
Confidence 111111111111110 00111 11234444443211 0 12334555555554444 555
Q ss_pred hhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhh
Q 000174 545 QSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQ 624 (1931)
Q Consensus 545 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~ 624 (1931)
...+++....++.+++++..-.|..+...+.-++... .-.++||.+...
T Consensus 373 l~lnRrGyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~---------------~l~Ch~CG~~~~---------------- 421 (665)
T PRK14873 373 VQVPRRGYVPSLACARCRTPARCRHCTGPLGLPSAGG---------------TPRCRWCGRAAP---------------- 421 (665)
T ss_pred EEecCCCCCCeeEhhhCcCeeECCCCCCceeEecCCC---------------eeECCCCcCCCc----------------
Confidence 5677777777777777776555554433221110000 001223321000
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhhhhhcccCCCCCH
Q 000174 625 LDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTP 704 (1931)
Q Consensus 625 ~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~ 704 (1931)
...|
T Consensus 422 ------------------------------p~~C---------------------------------------------- 425 (665)
T PRK14873 422 ------------------------------DWRC---------------------------------------------- 425 (665)
T ss_pred ------------------------------CccC----------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEE
Q 000174 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLL 784 (1931)
Q Consensus 705 Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vL 784 (1931)
..-+.. -|......++.+.+.|.++ +++.++..+.+ + .++++|. ++.+||
T Consensus 426 -------------p~Cgs~--~l~~~g~Gter~eeeL~~~--FP~~~V~r~d~-----d-------~~l~~~~-~~~~Il 475 (665)
T PRK14873 426 -------------PRCGSD--RLRAVVVGARRTAEELGRA--FPGVPVVTSGG-----D-------QVVDTVD-AGPALV 475 (665)
T ss_pred -------------CCCcCC--cceeeeccHHHHHHHHHHH--CCCCCEEEECh-----H-------HHHHhhc-cCCCEE
Confidence 000011 1223334455666666653 25566666644 2 4889997 599999
Q ss_pred EEec----ccccCCCCCCCCEEEEcCCCC------------CHHHHHHhhccCCCCCCcEEEEEecCChhHHHHHHHHHH
Q 000174 785 VATS----VAEEGLDIRQCNVVIRFDLAK------------TVLAYIQSRGRARKPGSDYILMIERGNLSHATFLRNARN 848 (1931)
Q Consensus 785 VaTd----VaeeGlDip~~~lVI~fD~p~------------s~~~yiQr~GRa~R~Gs~~ivlv~~~~~~~~~~l~~~~~ 848 (1931)
|+|. +++ +++.+|+..|... +...+.|..||+||.+..+.++++. +++|.......+.
T Consensus 476 VGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~-~p~~~~~~~l~~~ 549 (665)
T PRK14873 476 VATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVA-ESSLPTVQALIRW 549 (665)
T ss_pred EECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEe-CCCCHHHHHHHhC
Confidence 9999 665 3668877666431 3455689999999988777777774 6666544444445
Q ss_pred HHHHHHHHHHhhccccccccccccccc
Q 000174 849 SEETLRKEAIERTDLSHLKDTSRLISV 875 (1931)
Q Consensus 849 ~e~~l~~~~i~r~~l~~~~~~~~~~~~ 875 (1931)
..+.+.+..+..+....++++.++..+
T Consensus 550 d~~~F~~~EL~~R~~~~~PPf~~la~i 576 (665)
T PRK14873 550 DPVGHAERELAERAEVGFPPAVRMAAV 576 (665)
T ss_pred CHHHHHHHHHHHHHHcCccCceeeEEE
Confidence 566676667766677778887766543
|
|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.6e-15 Score=196.16 Aligned_cols=95 Identities=25% Similarity=0.296 Sum_probs=81.6
Q ss_pred CCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhh----cCCceEEEEecccccCC
Q 000174 719 TEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFR----DGRVTLLVATSVAEEGL 794 (1931)
Q Consensus 719 ~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr----~G~~~vLVaTdVaeeGl 794 (1931)
.++.+++|-|+|+..|..+++.|+.. +.++..+|+ .+....|.+.+++.+ .+...|+|||+|.|-|+
T Consensus 438 ~~~~kvlvI~NTV~~Aie~Y~~Lk~~----~~~v~LlHS-----Rf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagv 508 (733)
T COG1203 438 KEGKKVLVIVNTVDRAIELYEKLKEK----GPKVLLLHS-----RFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGV 508 (733)
T ss_pred ccCCcEEEEEecHHHHHHHHHHHHhc----CCCEEEEec-----ccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEe
Confidence 45789999999999999999999984 337999999 898888888777554 57788999999999999
Q ss_pred CCCCCCEEEEcCCCCCHHHHHHhhccCCCCC
Q 000174 795 DIRQCNVVIRFDLAKTVLAYIQSRGRARKPG 825 (1931)
Q Consensus 795 Dip~~~lVI~fD~p~s~~~yiQr~GRa~R~G 825 (1931)
|+. ++++|- -+..+.+.|||.||++|.|
T Consensus 509 Did-fd~mIT--e~aPidSLIQR~GRv~R~g 536 (733)
T COG1203 509 DID-FDVLIT--ELAPIDSLIQRAGRVNRHG 536 (733)
T ss_pred ccc-cCeeee--cCCCHHHHHHHHHHHhhcc
Confidence 995 777753 5677889999999999988
|
|
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.4e-15 Score=179.73 Aligned_cols=151 Identities=23% Similarity=0.256 Sum_probs=121.1
Q ss_pred CCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcE
Q 000174 301 EEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVV 379 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v 379 (1931)
.++|-|+|..++..+-+ +.++|.+-|.+|||.+|-.+|..-+.. +.|||+-.|-.+|-+|-++++..-++ .|
T Consensus 127 PF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~------kQRVIYTSPIKALSNQKYREl~~EF~-DV 199 (1041)
T KOG0948|consen 127 PFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE------KQRVIYTSPIKALSNQKYRELLEEFK-DV 199 (1041)
T ss_pred CcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh------cCeEEeeChhhhhcchhHHHHHHHhc-cc
Confidence 36789999999999887 899999999999999999888766653 67899999999999999999988663 47
Q ss_pred EEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCC
Q 000174 380 GHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEK 459 (1931)
Q Consensus 380 ~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~ 459 (1931)
++.+|+...+ ..+..+|||.++|..+|.+|.--+..+.+|||||.|-|++.. -.-+..+-+-..|.
T Consensus 200 GLMTGDVTIn-----------P~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkE-RGVVWEETIIllP~-- 265 (1041)
T KOG0948|consen 200 GLMTGDVTIN-----------PDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKE-RGVVWEETIILLPD-- 265 (1041)
T ss_pred ceeecceeeC-----------CCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccc-cceeeeeeEEeccc--
Confidence 8888887643 467789999999999999998889999999999999998742 11111111112232
Q ss_pred CcEEEEEeecCCC
Q 000174 460 RPSVFGMTASPVN 472 (1931)
Q Consensus 460 ~p~iLgLTATP~~ 472 (1931)
..+.+.||||..|
T Consensus 266 ~vr~VFLSATiPN 278 (1041)
T KOG0948|consen 266 NVRFVFLSATIPN 278 (1041)
T ss_pred cceEEEEeccCCC
Confidence 3678999999664
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-14 Score=163.88 Aligned_cols=163 Identities=28% Similarity=0.401 Sum_probs=129.0
Q ss_pred cCCCCCCcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000174 298 KMPEEQARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT 375 (1931)
Q Consensus 298 ~~~~~~~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~ 375 (1931)
..++..++++|.++++.+.. +++++.++||+|||.+++.++.+.+.. ....+++|++|+..++.||...+...+
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~----~~~~~~l~~~p~~~~~~~~~~~~~~~~ 78 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKR----GKGKRVLVLVPTRELAEQWAEELKKLG 78 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcc----cCCCcEEEEeCCHHHHHHHHHHHHHHh
Confidence 35678899999999999988 699999999999999999988877663 224679999999999999999999876
Q ss_pred C----CcEEEEeCCCcccccchHHHHhhcCCc-cEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHH
Q 000174 376 G----YVVGHYCGEMGQDFWDAQRWQREFDTK-QVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSE 450 (1931)
Q Consensus 376 ~----l~v~~~~G~~~~~~~~~~~w~~~~~~~-~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~ 450 (1931)
. .....+.+... ...|....... +|+++|++.+.+.+.........+++||+||||++... .+...+..
T Consensus 79 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~ 152 (201)
T smart00487 79 PSLGLKVVGLYGGDSK-----REQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDG-GFGDQLEK 152 (201)
T ss_pred ccCCeEEEEEeCCcch-----HHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcC-CcHHHHHH
Confidence 3 33444444322 34555555555 99999999999999887777888999999999999874 56666666
Q ss_pred HHhhcCCCCCcEEEEEeecCCC
Q 000174 451 FYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 451 ~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
++... ...++++++||||..
T Consensus 153 ~~~~~--~~~~~~v~~saT~~~ 172 (201)
T smart00487 153 LLKLL--PKNVQLLLLSATPPE 172 (201)
T ss_pred HHHhC--CccceEEEEecCCch
Confidence 66654 234889999999973
|
|
| >cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-15 Score=149.13 Aligned_cols=81 Identities=32% Similarity=0.552 Sum_probs=76.1
Q ss_pred CCccccCCcEEEcccCC----CeEEEEeeccCCCCCCCCCCCCCCCCCCccccHHHHHHhhcCccccCCCCceEEeeccc
Q 000174 1230 ANAGDLEGRIVTAAHSG----KRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVS 1305 (1931)
Q Consensus 1230 ~~~~~l~~~vv~~~~~~----~~y~v~~v~~dltp~s~fp~~~g~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL~~~~~~ 1305 (1931)
+.+++|.|+||+++|++ ++|+|++|++||||.|+||.. ++.||.+||++|||+.|.+.+||||+|+.++
T Consensus 36 f~~~~~~g~vV~t~YnN~d~pK~Y~V~dI~~dltP~S~F~~~-------~~~Ty~eYyk~KY~I~I~~~~QPLL~v~~~s 108 (122)
T cd02843 36 FDAEDYQDAVVMPWYRNFDQPQYFYVAEICTDLRPLSKFPGP-------EYETFEEYYKKKYKLDIQNLNQPLLDVDHTS 108 (122)
T ss_pred CCHHHhCCCEEeecccCCCCCeEEEEEEEcCCCCCCCCCCCC-------CCccHHHHHHHhcCeEeccCCCCcEeecCcc
Confidence 56789999999999998 899999999999999999865 5899999999999999999999999999999
Q ss_pred cccccCCCcccc
Q 000174 1306 YCKNLLSPRFEH 1317 (1931)
Q Consensus 1306 ~~~n~l~~~~~~ 1317 (1931)
.++|||+|++.+
T Consensus 109 ~~lNll~pr~~~ 120 (122)
T cd02843 109 TRLNLLTPRYVN 120 (122)
T ss_pred ccccccCccccc
Confidence 999999999865
|
Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. |
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-13 Score=178.81 Aligned_cols=310 Identities=18% Similarity=0.206 Sum_probs=203.0
Q ss_pred CCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEE
Q 000174 303 QARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGH 381 (1931)
Q Consensus 303 ~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~ 381 (1931)
..+.+..+.+..+.+ +-+||+++||||||-.--..+.+... ..+..+.+.-|.|.=|.-.++.+.+.++.+++.
T Consensus 50 Pv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-----~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~ 124 (845)
T COG1643 50 PVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-----GIAGKIGCTQPRRLAARSVAERVAEELGEKLGE 124 (845)
T ss_pred CcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-----ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCc
Confidence 446666677777666 66899999999999776555443322 245678999999977888888888877776655
Q ss_pred EeCCCcccccchHHHHh-hcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHH-HHHHHHHhhcCCCC
Q 000174 382 YCGEMGQDFWDAQRWQR-EFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYS-LVMSEFYHTTSKEK 459 (1931)
Q Consensus 382 ~~G~~~~~~~~~~~w~~-~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~-~im~~~~~~~~~~~ 459 (1931)
..|-.. .|+. .-....|-++|-|+|+..+.+... ++.+++|||||+|+=.-+..+. -.++.+....+.
T Consensus 125 ~VGY~i-------Rfe~~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~-- 194 (845)
T COG1643 125 TVGYSI-------RFESKVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRD-- 194 (845)
T ss_pred eeeEEE-------EeeccCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCC--
Confidence 544321 1111 114678999999999999987654 8999999999999764322221 122232322221
Q ss_pred CcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcC-CeEEEecchHHHhhhCCCCceeEEEeccchhhhHHHHHHHHHHH
Q 000174 460 RPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLD-SVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEV 538 (1931)
Q Consensus 460 ~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~-~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~l~~ 538 (1931)
.-++|.||||... ..+..+++ +.+..+..+ ..|.+ +.|.+.....+-
T Consensus 195 DLKiIimSATld~--------------~rfs~~f~~apvi~i~GR-------~fPVe--i~Y~~~~~~d~~--------- 242 (845)
T COG1643 195 DLKLIIMSATLDA--------------ERFSAYFGNAPVIEIEGR-------TYPVE--IRYLPEAEADYI--------- 242 (845)
T ss_pred CceEEEEecccCH--------------HHHHHHcCCCCEEEecCC-------ccceE--EEecCCCCcchh---------
Confidence 2689999999642 24455555 444444221 12222 222111000000
Q ss_pred HHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 000174 539 AVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQND 618 (1931)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~ 618 (1931)
T Consensus 243 -------------------------------------------------------------------------------- 242 (845)
T COG1643 243 -------------------------------------------------------------------------------- 242 (845)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhhhhhccc
Q 000174 619 ERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVA 698 (1931)
Q Consensus 619 ~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~ 698 (1931)
T Consensus 243 -------------------------------------------------------------------------------- 242 (845)
T COG1643 243 -------------------------------------------------------------------------------- 242 (845)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCC-CCceeEEEEccCCCccccHHHHHHHHHHhh
Q 000174 699 DGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSL-SFVKSASLIGHNNSQEMRTFQMQETIAKFR 777 (1931)
Q Consensus 699 ~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l-~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr 777 (1931)
=...+...+..........++||.+-......+.+.|.+ ..+ ..+.+..+|| .++..+|.++++.--
T Consensus 243 ------l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~-~~l~~~~~i~PLy~-----~L~~~eQ~rvF~p~~ 310 (845)
T COG1643 243 ------LLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEK-AELGDDLEILPLYG-----ALSAEEQVRVFEPAP 310 (845)
T ss_pred ------HHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHh-ccccCCcEEeeccc-----cCCHHHHHhhcCCCC
Confidence 000011111111123456799999999999988888886 223 4688999999 999999999877666
Q ss_pred cCCceEEEEecccccCCCCCCCCEEE--------EcCCC----------CCHHHHHHhhccCCCCCCc--EEEE
Q 000174 778 DGRVTLLVATSVAEEGLDIRQCNVVI--------RFDLA----------KTVLAYIQSRGRARKPGSD--YILM 831 (1931)
Q Consensus 778 ~G~~~vLVaTdVaeeGlDip~~~lVI--------~fD~p----------~s~~~yiQr~GRa~R~Gs~--~ivl 831 (1931)
.|+-+|++||+|||.+|.||++.+|| .||+- -|-.+..||.|||||.+.. |.+.
T Consensus 311 ~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLy 384 (845)
T COG1643 311 GGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLY 384 (845)
T ss_pred CCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEec
Confidence 77666999999999999999999999 45543 3556778999999996554 5554
|
|
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-13 Score=176.35 Aligned_cols=153 Identities=18% Similarity=0.192 Sum_probs=106.1
Q ss_pred CCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc----C
Q 000174 302 EQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT----G 376 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~----~ 376 (1931)
...+.++.+.+..+.+ +.++|.++||+|||...-..|++.... .++..++++--|.|--|.-.++++..-- |
T Consensus 172 LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~---~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 172 LPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIE---SGAACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred CccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHh---cCCCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 3456778888888877 788999999999997777666554332 2356778888899877777777666532 3
Q ss_pred CcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHH-HHHHHHhhc
Q 000174 377 YVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSL-VMSEFYHTT 455 (1931)
Q Consensus 377 l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~-im~~~~~~~ 455 (1931)
-.|+.-.+-.+ .......+++||.|+|++.|.. .-.+..+..||+||+|.-.-++.|-. +++.++...
T Consensus 249 ~~VGYqvrl~~----------~~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~ 317 (924)
T KOG0920|consen 249 EEVGYQVRLES----------KRSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRN 317 (924)
T ss_pred CeeeEEEeeec----------ccCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhC
Confidence 22222111111 1113578999999999999876 45688999999999997655444443 445555443
Q ss_pred CCCCCcEEEEEeecCC
Q 000174 456 SKEKRPSVFGMTASPV 471 (1931)
Q Consensus 456 ~~~~~p~iLgLTATP~ 471 (1931)
+.-++++||||..
T Consensus 318 ---p~LkvILMSAT~d 330 (924)
T KOG0920|consen 318 ---PDLKVILMSATLD 330 (924)
T ss_pred ---CCceEEEeeeecc
Confidence 4578999999964
|
|
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-12 Score=164.13 Aligned_cols=176 Identities=16% Similarity=0.191 Sum_probs=123.8
Q ss_pred CCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcC----
Q 000174 302 EQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG---- 376 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~---- 376 (1931)
..|-.+|.+.+...-. ..++|++||-+|||++....|..+++. ....-||+++||.+|+.|....+...++
T Consensus 510 F~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRe----sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~ 585 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRE----SDSDVVIYVAPTKALVNQVSANVYARFDTKTF 585 (1330)
T ss_pred cCCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhh----cCCCEEEEecchHHHhhhhhHHHHHhhccCcc
Confidence 5688999999988876 789999999999999999888877774 4567899999999999999888877653
Q ss_pred CcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhc---ccccccceeEEEEeCCCcccCCCcHHHHHHHHHh
Q 000174 377 YVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH---SIIKMEAINLLILDECHHAVKKHPYSLVMSEFYH 453 (1931)
Q Consensus 377 l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~---~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~ 453 (1931)
.+...+.|.+..+. +... -+|+|+|+-|+.|-..|-. ..-...++.++||||+|.+.+. --..+...+..
T Consensus 586 ~rg~sl~g~ltqEY-sinp-----~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~-ed~l~~Eqll~ 658 (1330)
T KOG0949|consen 586 LRGVSLLGDLTQEY-SINP-----WNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNE-EDGLLWEQLLL 658 (1330)
T ss_pred ccchhhHhhhhHHh-cCCc-----hhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhcccc-ccchHHHHHHH
Confidence 23344555554322 1112 2799999999999887754 3345789999999999999863 22333333333
Q ss_pred hcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEE
Q 000174 454 TTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVC 498 (1931)
Q Consensus 454 ~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~ 498 (1931)
.. ...+|+||||..+ +......+.+.+.-..-.+.
T Consensus 659 li----~CP~L~LSATigN------~~l~qkWlnq~~R~~sr~~e 693 (1330)
T KOG0949|consen 659 LI----PCPFLVLSATIGN------PNLFQKWLNQRGRAMSRNAE 693 (1330)
T ss_pred hc----CCCeeEEecccCC------HHHHHHHHHHHHhhcCCCee
Confidence 22 2458999999764 33334444445554443333
|
|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-12 Score=170.64 Aligned_cols=131 Identities=11% Similarity=0.102 Sum_probs=94.2
Q ss_pred CCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCC-CCCch
Q 000174 401 DTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLK-GVSSQ 479 (1931)
Q Consensus 401 ~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~-~~~~~ 479 (1931)
....|+++||++|.+.+-.+.+.+..+..||||||||+.+++.|..|++.|.... ..+.|.+|||+|.... +.
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n---~~gfIkafSdsP~~~~~g~--- 79 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKN---KTGFIKAFSDNPEAFTMGF--- 79 (814)
T ss_pred hcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhC---CCcceEEecCCCcccccch---
Confidence 6788999999999999999999999999999999999999999999998776543 4589999999998532 21
Q ss_pred hHHHHHHHHHHHhcCC-eE-EEecchHHHhhhCCC--CceeEEEeccchhhhHHHHHHHHHHHHHH
Q 000174 480 VDCAIKICNLESKLDS-VV-CTIKDRKELEKHVPM--PSEVVVEYDKAASLWSLHEQLKQMEVAVE 541 (1931)
Q Consensus 480 ~~~~~~l~~Le~~l~~-~i-~t~~~~~~l~~~~~~--p~e~~~~y~~~~~~~~l~~~i~~l~~~~~ 541 (1931)
..+..+...|.- .+ ..+....++..++.. |....+....+..+..+...|..++....
T Consensus 80 ----~~l~~vmk~L~i~~v~l~prf~~~V~~~l~~~~~~V~ei~V~l~~~m~~Iq~~l~~~l~~~l 141 (814)
T TIGR00596 80 ----SPLETKMRNLFLRHVYLWPRFHVEVASSLEKHKAEVIELHVSLTDSMSQIQSAILECLNKCI 141 (814)
T ss_pred ----HHHHHHHHHhCcCeEEEeCCCchHHHHHhccCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 244444444432 22 333566677777665 55555555656666666666655554443
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-14 Score=138.27 Aligned_cols=73 Identities=34% Similarity=0.515 Sum_probs=71.5
Q ss_pred CCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCC
Q 000174 748 SFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPG 825 (1931)
Q Consensus 748 ~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~G 825 (1931)
.++++..+|| +++..+|++++++|++++.+|||||+++++|||+|.+++||+||+|||+..|+|++||++|.|
T Consensus 6 ~~~~~~~i~~-----~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 6 KGIKVAIIHG-----DMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp TTSSEEEEST-----TSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CCCcEEEEEC-----CCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 6899999999 999999999999999999999999999999999999999999999999999999999999987
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-12 Score=153.63 Aligned_cols=118 Identities=23% Similarity=0.305 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEE
Q 000174 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLL 784 (1931)
Q Consensus 705 Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vL 784 (1931)
.+.-|+.-+... ...+.|++|-+=|+.+|+.|.++|.+ .|+++.++|+ +...-+|.+++++.|.|.++||
T Consensus 431 QvdDL~~EI~~r-~~~~eRvLVTtLTKkmAEdLT~Yl~e----~gikv~YlHS-----didTlER~eIirdLR~G~~DvL 500 (663)
T COG0556 431 QVDDLLSEIRKR-VAKNERVLVTTLTKKMAEDLTEYLKE----LGIKVRYLHS-----DIDTLERVEIIRDLRLGEFDVL 500 (663)
T ss_pred cHHHHHHHHHHH-HhcCCeEEEEeehHHHHHHHHHHHHh----cCceEEeeec-----cchHHHHHHHHHHHhcCCccEE
Confidence 444555544442 34568999999999999999999999 6899999999 9999999999999999999999
Q ss_pred EEecccccCCCCCCCCEEEEcCCC-----CCHHHHHHhhccCCCCCCcEEEEE
Q 000174 785 VATSVAEEGLDIRQCNVVIRFDLA-----KTVLAYIQSRGRARKPGSDYILMI 832 (1931)
Q Consensus 785 VaTdVaeeGlDip~~~lVI~fD~p-----~s~~~yiQr~GRa~R~Gs~~ivlv 832 (1931)
|.-+.+-||||+|.|.+|..+|.. .|-.+.||-+|||+|.-..-++|.
T Consensus 501 VGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~GkvIlY 553 (663)
T COG0556 501 VGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILY 553 (663)
T ss_pred EeehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCCeEEEE
Confidence 999999999999999999999865 589999999999999766555554
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-12 Score=178.31 Aligned_cols=139 Identities=22% Similarity=0.214 Sum_probs=95.1
Q ss_pred hhhcCCCCCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHH
Q 000174 295 AKEKMPEEQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAE 369 (1931)
Q Consensus 295 ~l~~~~~~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~ 369 (1931)
.+...+ .++|+.|.++++.+.+ +++++.++||+|||++|++|+...+. .+.+++|.+||++|..|+..
T Consensus 238 ~~~~~~-~~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~------~~~~vvi~t~t~~Lq~Ql~~ 310 (850)
T TIGR01407 238 NIDRLG-LEYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI------TEKPVVISTNTKVLQSQLLE 310 (850)
T ss_pred hhhhcC-CccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc------CCCeEEEEeCcHHHHHHHHH
Confidence 343444 4589999997775433 77899999999999999999876544 24579999999999999865
Q ss_pred -H---HHHHcC--CcEEEEeCCCcc--------------c------------ccc-----------------hHHHHh--
Q 000174 370 -V---IREQTG--YVVGHYCGEMGQ--------------D------------FWD-----------------AQRWQR-- 398 (1931)
Q Consensus 370 -~---l~~~~~--l~v~~~~G~~~~--------------~------------~~~-----------------~~~w~~-- 398 (1931)
+ +.+.++ +++.++.|..+. . .|- ...|..
T Consensus 311 ~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~~~~~i~ 390 (850)
T TIGR01407 311 KDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKMFFAQVR 390 (850)
T ss_pred HHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchhhHHHhh
Confidence 3 344444 666666554311 0 000 001222
Q ss_pred ----------------------hcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 399 ----------------------EFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 399 ----------------------~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
....++|||+.+.-|++.+.....-+....+||||||||+.+
T Consensus 391 ~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d 454 (850)
T TIGR01407 391 HDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPD 454 (850)
T ss_pred cCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHH
Confidence 123679999999999987754332345567999999999973
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-12 Score=166.05 Aligned_cols=137 Identities=19% Similarity=0.210 Sum_probs=101.9
Q ss_pred hhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHH
Q 000174 296 KEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQ 374 (1931)
Q Consensus 296 l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~ 374 (1931)
.++....+|+..|+--..++.. +..-+.||||.|||.--++....+.. .++++++|+||..|+.|.++.++++
T Consensus 75 F~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~------kgkr~yii~PT~~Lv~Q~~~kl~~~ 148 (1187)
T COG1110 75 FKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAK------KGKRVYIIVPTTTLVRQVYERLKKF 148 (1187)
T ss_pred HHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHh------cCCeEEEEecCHHHHHHHHHHHHHH
Confidence 4455566999999999888888 78889999999999665555444433 3588999999999999999999987
Q ss_pred c---C-CcEEE-EeCCCcccccchHHHHhhc-CCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCC
Q 000174 375 T---G-YVVGH-YCGEMGQDFWDAQRWQREF-DTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKK 441 (1931)
Q Consensus 375 ~---~-l~v~~-~~G~~~~~~~~~~~w~~~~-~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~ 441 (1931)
. + +.+.+ +||.+.... +.+...++- .+.+|+|+|.+-|....+. +.--++++|++|.+|-++..
T Consensus 149 ~e~~~~~~~~~~yh~~l~~~e-kee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~Lka 218 (1187)
T COG1110 149 AEDAGSLDVLVVYHSALPTKE-KEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKA 218 (1187)
T ss_pred HhhcCCcceeeeeccccchHH-HHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhc
Confidence 5 2 44433 788765432 112222222 3799999999999876654 33357999999999988864
|
|
| >KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.5e-14 Score=155.28 Aligned_cols=215 Identities=20% Similarity=0.238 Sum_probs=174.0
Q ss_pred hhhHHHHHHHcC-CCcCCHHHHHHHhcCCCCCC-----------------CCCCCchhHHHHHHHHHHHHHHHHHHHhCC
Q 000174 1589 SVDFHALEDALK-IKFKDRGLLVEAITHASRPS-----------------SGVSCYQRLEFVGDAVLDHLITKHLFFSYT 1650 (1931)
Q Consensus 1589 ~~~~~~le~~lg-y~F~~~~LL~~AlTH~S~~~-----------------~~~~~yeRLEfLGDavLd~~v~~~l~~~~p 1650 (1931)
...+..|+++|| -.| ..++|..|||.+||.. ++..+|+-|--.|-.++++.|++||-.+||
T Consensus 62 ~sel~afg~RL~~~~i-s~~~l~ka~t~~s~~~~~kv~~~~lg~~~~~~~~~~~~N~~L~~~Gk~~~~~~v~~~l~~kyP 140 (333)
T KOG3769|consen 62 NSELSAFGKRLQSEEI-SLSYLLKALTNLSFSYPEKVLRQQLGAETVAQVNPQYSNEELVEIGKQFLSFYVTEYLKCKYP 140 (333)
T ss_pred hHHHHHHHHHhccccc-cHHHHHHHHhCccccchHHHhhhhhcchhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445899999999 555 5788999999999821 234689999999999999999999999999
Q ss_pred CCCchHHHHHHHHhhChHHHHHHHHHcCchhhhccCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHH
Q 000174 1651 NLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVES 1730 (1931)
Q Consensus 1651 ~~~~g~Lt~lr~~lv~n~~La~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEA 1730 (1931)
.+++..|+.+-+.+.+.+.||.+|..+|+.++++...-... +.....+...++|-|
T Consensus 141 rlP~E~l~ai~n~ll~ee~LahiAt~lGie~l~~seeFp~~------------------------~eisq~ess~~aI~A 196 (333)
T KOG3769|consen 141 RLPEEGLHAIVNGLLGEEVLAHIATHLGIEELGLSEEFPKV------------------------GEISQDESSRRAIGA 196 (333)
T ss_pred CCcHHHHHHHHHHhhhHHHHHHHHHHhhHHHHhhcccCCCc------------------------hhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999987765433211 011223677889999
Q ss_pred HHhHhhccccCCceeEEeeec-cCCCCCCC--CCCCCCCChHHHHHHHHhhcCC-ceeEEecc-C-----CeEEEEEEEC
Q 000174 1731 IAGAIFLDSGRDTSVVWQVFQ-PLLDPMVT--PETLPMHPVRELQERCQQQAEG-LEYKASRS-G-----NLATVEVYID 1800 (1931)
Q Consensus 1731 iiGAiylDsg~~~~~v~~~~~-~~l~~~i~--~~~~~~~P~~~L~e~~~~~~~~-~~y~~~~~-g-----~~f~v~V~v~ 1800 (1931)
++|++++..++. .|.+|+. +++...+. .+--..+|.+.|.++|++++.. +++++..+ | |.|.|.++.+
T Consensus 197 l~~~~~~ek~~~--~v~dFI~~qi~~k~L~~~~m~ql~~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~ 274 (333)
T KOG3769|consen 197 LLGSVGLEKGFN--FVRDFINDQILSKDLDPREMWQLQWPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSG 274 (333)
T ss_pred HHhcccHHHHHH--HHHHHHHHHhhhhccchHhhccccchHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecC
Confidence 999999988876 3456653 44444444 2334679999999999998865 68887654 2 5899999999
Q ss_pred CEEEEEeecCCHHHHHHHHHHHHHHHHHhh
Q 000174 1801 GVQVGVAQNPQKKMAQKLAARNALAVLKEK 1830 (1931)
Q Consensus 1801 g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 1830 (1931)
.+.+|.|.|.|-+.|+..||..||.++=..
T Consensus 275 kkllGqG~Gesl~~A~e~AA~dAL~k~y~~ 304 (333)
T KOG3769|consen 275 KKLLGQGQGESLKLAEEQAARDALIKLYDH 304 (333)
T ss_pred chhhccCcchHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999988654
|
|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-13 Score=145.65 Aligned_cols=117 Identities=27% Similarity=0.434 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceE
Q 000174 704 PKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTL 783 (1931)
Q Consensus 704 ~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~v 783 (1931)
.|...+.+++.... ..+.++||||++...+..+.+.|.. .+..+..+|| .++..+|..++++|++|...+
T Consensus 12 ~k~~~i~~~i~~~~-~~~~~~lvf~~~~~~~~~~~~~l~~----~~~~~~~~~~-----~~~~~~~~~~~~~f~~~~~~i 81 (131)
T cd00079 12 EKLEALLELLKEHL-KKGGKVLIFCPSKKMLDELAELLRK----PGIKVAALHG-----DGSQEEREEVLKDFREGEIVV 81 (131)
T ss_pred HHHHHHHHHHHhcc-cCCCcEEEEeCcHHHHHHHHHHHHh----cCCcEEEEEC-----CCCHHHHHHHHHHHHcCCCcE
Confidence 68888988888763 2578999999999999999999987 4678999999 899999999999999999999
Q ss_pred EEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEE
Q 000174 784 LVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYIL 830 (1931)
Q Consensus 784 LVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~iv 830 (1931)
||+|+++++|+|+|.+++||.+++||+...|+|++||++|.|+...+
T Consensus 82 li~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~ 128 (131)
T cd00079 82 LVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTA 128 (131)
T ss_pred EEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceE
Confidence 99999999999999999999999999999999999999999976443
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-13 Score=175.79 Aligned_cols=121 Identities=14% Similarity=0.191 Sum_probs=104.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCc
Q 000174 702 VTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRV 781 (1931)
Q Consensus 702 ~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~ 781 (1931)
...|...|++.+... +..+..+||||+++..++.|.++|.. .+++...||+ .+.+|+..+.+|+.+..
T Consensus 580 ~~eK~~Ali~~I~~~-~~~grpVLIft~Sve~sE~Ls~~L~~----~gI~h~vLna-------kq~~REa~Iia~AG~~g 647 (1025)
T PRK12900 580 RREKYNAIVLKVEEL-QKKGQPVLVGTASVEVSETLSRMLRA----KRIAHNVLNA-------KQHDREAEIVAEAGQKG 647 (1025)
T ss_pred HHHHHHHHHHHHHHH-hhCCCCEEEEeCcHHHHHHHHHHHHH----cCCCceeecC-------CHHHhHHHHHHhcCCCC
Confidence 346889999998765 34678899999999999999999998 6899999987 47789999999999999
Q ss_pred eEEEEecccccCCCCC---CCC-----EEEEcCCCCCHHHHHHhhccCCCCCCc--EEEEEec
Q 000174 782 TLLVATSVAEEGLDIR---QCN-----VVIRFDLAKTVLAYIQSRGRARKPGSD--YILMIER 834 (1931)
Q Consensus 782 ~vLVaTdVaeeGlDip---~~~-----lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivlv~~ 834 (1931)
.|+|||++|+||+||+ .|. +||.++.|.+.+.|.||+|||||.|.. .++++..
T Consensus 648 ~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSl 710 (1025)
T PRK12900 648 AVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSL 710 (1025)
T ss_pred eEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEech
Confidence 9999999999999999 554 349999999999999999999999977 3444443
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.5e-13 Score=143.60 Aligned_cols=142 Identities=27% Similarity=0.316 Sum_probs=108.2
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcC--CcEEEEeCCCcccccchHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG--YVVGHYCGEMGQDFWDAQR 395 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~--l~v~~~~G~~~~~~~~~~~ 395 (1931)
+++++.++||+|||.+++.++.+.... ...++++|++|++.|+.|+.+.+..... ..+..+.+.... ...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~----~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 72 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS----LKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSI----KQQ 72 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc----ccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcch----hHH
Confidence 478999999999999999998877653 3456899999999999999999998874 778887776432 233
Q ss_pred HHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecC
Q 000174 396 WQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASP 470 (1931)
Q Consensus 396 w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP 470 (1931)
+.......+|+++|++.+...+.........+++||+||+|++.........+.... .....++++++||||
T Consensus 73 ~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~---~~~~~~~~i~~saTp 144 (144)
T cd00046 73 EKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILL---KLPKDRQVLLLSATP 144 (144)
T ss_pred HHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHh---hCCccceEEEEeccC
Confidence 334457899999999999887776555667899999999999987533332211111 123447899999998
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-11 Score=151.96 Aligned_cols=108 Identities=18% Similarity=0.229 Sum_probs=85.4
Q ss_pred CCceEEEEEeehhHHHHHHHHHhcCCC-C-CC--ceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCC
Q 000174 720 EDFRAIIFVERVVAALVLPKVFAELPS-L-SF--VKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLD 795 (1931)
Q Consensus 720 ~~~k~IIFv~~r~ta~~L~~~L~~~~~-l-~~--~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlD 795 (1931)
+..-++||-...+..+.+++.|.+... + .. ..+..++| .++.++|.++.+.--.|.-+|++||++||..|.
T Consensus 257 ~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~-----aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlT 331 (674)
T KOG0922|consen 257 PPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYG-----ALPSEEQSRVFDPAPPGKRKVILSTNIAETSLT 331 (674)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecc-----cCCHHHhhccccCCCCCcceEEEEcceeeeeEE
Confidence 445789999999888888888876421 1 11 14677899 999999999977777888899999999999999
Q ss_pred CCCCCEEE--------EcCC----------CCCHHHHHHhhccCCCCCCc--EEEEE
Q 000174 796 IRQCNVVI--------RFDL----------AKTVLAYIQSRGRARKPGSD--YILMI 832 (1931)
Q Consensus 796 ip~~~lVI--------~fD~----------p~s~~~yiQr~GRa~R~Gs~--~ivlv 832 (1931)
|+++.+|| .|++ |-|-.+-.||.|||||.|.. |.+..
T Consensus 332 I~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYt 388 (674)
T KOG0922|consen 332 IDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYT 388 (674)
T ss_pred ecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeee
Confidence 99999998 4665 44677789999999997654 55553
|
|
| >PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1 | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-12 Score=122.46 Aligned_cols=75 Identities=36% Similarity=0.606 Sum_probs=68.0
Q ss_pred chHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCC--cceeEEC--CCCCCHHHHHHHHHHHHHHHHh
Q 000174 1853 FTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKG--WTDECVG--EPMPSVKKAKDSAAVLLLELLN 1927 (1931)
Q Consensus 1853 n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~--~~~~g~g--~~~~sKK~Ak~~AA~~~l~~L~ 1927 (1931)
+|++.|+|+|++++|+.|+|++..+.||+|.+.|+++|+|.+..+. +..++.+ +++++||+||..||+.||+.|.
T Consensus 2 ~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg 80 (80)
T PF14709_consen 2 SAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG 80 (80)
T ss_pred CHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence 6899999999999999999999999999999999999999988763 4556666 8999999999999999999873
|
|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.4e-12 Score=155.34 Aligned_cols=154 Identities=21% Similarity=0.241 Sum_probs=98.8
Q ss_pred HHHHHHHHHhc--------------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH
Q 000174 307 YQLDVLEQAKK--------------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR 372 (1931)
Q Consensus 307 ~Q~eai~~~l~--------------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~ 372 (1931)
||.+++.+++. +++|+++++|+|||++++..+..+.... .......+|||||+ .+..||..++.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~-~~~~~~~~LIv~P~-~l~~~W~~E~~ 78 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEF-PQRGEKKTLIVVPS-SLLSQWKEEIE 78 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCC-TTSS-S-EEEEE-T-TTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhcc-ccccccceeEeecc-chhhhhhhhhc
Confidence 79999988743 5689999999999999999887554421 11122359999999 88899999999
Q ss_pred HHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHH---hcccccccceeEEEEeCCCcccCCCcHHH
Q 000174 373 EQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNIL---RHSIIKMEAINLLILDECHHAVKKHPYSL 446 (1931)
Q Consensus 373 ~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L---~~~~l~l~~i~lLV~DEaH~~~~~~~~~~ 446 (1931)
+++ .+++..+.|... ............+|+|+|++.+.... ....+...++++||+||+|.+.+.. ..
T Consensus 79 ~~~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~--s~ 152 (299)
T PF00176_consen 79 KWFDPDSLRVIIYDGDSE----RRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKD--SK 152 (299)
T ss_dssp HHSGT-TS-EEEESSSCH----HHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTT--SH
T ss_pred cccccccccccccccccc----cccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccc--cc
Confidence 998 467777777651 11122223467899999999998110 0111233459999999999997532 22
Q ss_pred HHHHHHhhcCCCCCcEEEEEeecCCC
Q 000174 447 VMSEFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 447 im~~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
..+.+.. -..+++++|||||..
T Consensus 153 ~~~~l~~----l~~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 153 RYKALRK----LRARYRWLLSGTPIQ 174 (299)
T ss_dssp HHHHHHC----CCECEEEEE-SS-SS
T ss_pred ccccccc----cccceEEeecccccc
Confidence 2222222 124789999999996
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.6e-12 Score=121.67 Aligned_cols=81 Identities=38% Similarity=0.592 Sum_probs=75.1
Q ss_pred HHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHH
Q 000174 736 VLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYI 815 (1931)
Q Consensus 736 ~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yi 815 (1931)
.+.+.|.. .++++..+|| +++..+|.++++.|+++...|||+|+++++|+|+|.++.||.+++|+++..|+
T Consensus 2 ~l~~~l~~----~~~~~~~~~~-----~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~ 72 (82)
T smart00490 2 ELAELLKE----LGIKVARLHG-----GLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYI 72 (82)
T ss_pred HHHHHHHH----CCCeEEEEEC-----CCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHH
Confidence 35566666 4688999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCC
Q 000174 816 QSRGRARKPG 825 (1931)
Q Consensus 816 Qr~GRa~R~G 825 (1931)
|++||++|.|
T Consensus 73 Q~~gR~~R~g 82 (82)
T smart00490 73 QRIGRAGRAG 82 (82)
T ss_pred HhhcccccCC
Confidence 9999999986
|
|
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-11 Score=158.82 Aligned_cols=122 Identities=18% Similarity=0.163 Sum_probs=104.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCc
Q 000174 702 VTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRV 781 (1931)
Q Consensus 702 ~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~ 781 (1931)
.+.|+..++++|......+..++|||++....+..+...|.. .++....+.| .|+...|.+.+..|..+..
T Consensus 520 ~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~----~~~~~~~~~g-----~~~~~~r~~s~~~~~~~~~ 590 (674)
T KOG1001|consen 520 ESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFF----KGFVFLRYDG-----EMLMKIRTKSFTDFPCDPL 590 (674)
T ss_pred hhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhh----cccccchhhh-----hhHHHHHHhhhcccccCcc
Confidence 577888898888854222224999999999999999988874 6788889999 9999999999999995443
Q ss_pred -e-EEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEEEE
Q 000174 782 -T-LLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMI 832 (1931)
Q Consensus 782 -~-vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ivlv 832 (1931)
. .|++..++.-|+|+..+++|+..|+-|||..-.|.+-||+|.|+.--|.+
T Consensus 591 ~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 591 VTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred HHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeee
Confidence 3 66888999999999999999999999999999999999999999855554
|
|
| >KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.3e-12 Score=143.90 Aligned_cols=108 Identities=32% Similarity=0.378 Sum_probs=89.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhhhhhhccCCcCCcccCCCCccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEE
Q 000174 1809 NPQKKMAQKLAARNALAVLKEKETAEAKEKGDENGKKRKNGTQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTY 1888 (1931)
Q Consensus 1809 g~skk~Ak~~AA~~AL~~L~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~ 1888 (1931)
|.+...|++.||..||..|...............+ ...|||.|||||.+++.+ |.|++++++||+|.+.|++
T Consensus 2 g~t~~~a~~daaa~al~~l~~~~~~~~~~~~~~~g-------~KS~IS~l~E~~~r~~~~-v~fevl~eeGp~H~~~fv~ 73 (339)
T KOG3732|consen 2 GKTMQQAKHDAAAKALQVLQNGLISEGVMLNADPG-------AKSPISLLQEYGLRRGLT-PVYEVLREEGPPHMPNFVF 73 (339)
T ss_pred ccchhhhhccccccchhhccCCCcchhcccccCcc-------cCChHHHHHHHHHHhCCC-cceeeeeccCCccCCCeEE
Confidence 45668899999999999998765444443222222 157999999999999955 5599999999999999999
Q ss_pred EEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhhCC
Q 000174 1889 AVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKWYS 1931 (1931)
Q Consensus 1889 ~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~~~ 1931 (1931)
+|+|. ..+++|.| +|||.||+.||..||.+|+++.|
T Consensus 74 rvtvg----~~~a~GeG---~sKK~AKh~AA~~~L~~lk~l~~ 109 (339)
T KOG3732|consen 74 RVTVG----EITATGEG---KSKKLAKHRAAEALLKELKKLPP 109 (339)
T ss_pred EEEEe----eeEEecCC---CchhHHHHHHHHHHHHHHhcCCC
Confidence 99995 55788999 99999999999999999998764
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-09 Score=147.07 Aligned_cols=131 Identities=18% Similarity=0.186 Sum_probs=92.9
Q ss_pred CCCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHH-HHH---
Q 000174 301 EEQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQA-EVI--- 371 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~-~~l--- 371 (1931)
..+.|+-|.++...+.+ ..+++.++||+|||++|++|+.... .+.++||++||++|+.|.. +.+
T Consensus 243 ~~e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-------~~~~vvI~t~T~~Lq~Ql~~~~i~~l 315 (820)
T PRK07246 243 GLEERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-------DQRQIIVSVPTKILQDQIMAEEVKAI 315 (820)
T ss_pred CCccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-------CCCcEEEEeCcHHHHHHHHHHHHHHH
Confidence 36899999996666543 6688999999999999999976532 2467999999999999984 444
Q ss_pred HHHcCCcEEEEeCCCcccc--------------------------c-----------------chHHHHhh---------
Q 000174 372 REQTGYVVGHYCGEMGQDF--------------------------W-----------------DAQRWQRE--------- 399 (1931)
Q Consensus 372 ~~~~~l~v~~~~G~~~~~~--------------------------~-----------------~~~~w~~~--------- 399 (1931)
.+.+++++..+.|+.+.-. | ....|..+
T Consensus 316 ~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~ 395 (820)
T PRK07246 316 QEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQS 395 (820)
T ss_pred HHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCC
Confidence 4456777766654431000 0 00113221
Q ss_pred ---------------cCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCccc
Q 000174 400 ---------------FDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAV 439 (1931)
Q Consensus 400 ---------------~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~ 439 (1931)
....+|||+....|+..+..+. .+...+.+|||||||+-
T Consensus 396 cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~ 449 (820)
T PRK07246 396 SLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLM 449 (820)
T ss_pred CCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhH
Confidence 1357999999999888765433 25678999999999987
|
|
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-10 Score=139.81 Aligned_cols=156 Identities=17% Similarity=0.161 Sum_probs=100.4
Q ss_pred CCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcE
Q 000174 301 EEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVV 379 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v 379 (1931)
....++|-.+.+..+.+ +-+||.++||||||-+.--.+.+--- ...++++-+--|.|.-+.-++..+.+-+|.+.
T Consensus 263 sLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGy----tk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkL 338 (902)
T KOG0923|consen 263 SLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGY----TKGGKKIGCTQPRRVAAMSVAARVAEEMGVKL 338 (902)
T ss_pred cCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhccc----ccCCceEeecCcchHHHHHHHHHHHHHhCccc
Confidence 34567777888888887 67789999999999653322221100 12345588888999998888888887776665
Q ss_pred EEEeCCCcccccchHHHHhh-cCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC-CCcHHHHHHHHHhhcCC
Q 000174 380 GHYCGEMGQDFWDAQRWQRE-FDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK-KHPYSLVMSEFYHTTSK 457 (1931)
Q Consensus 380 ~~~~G~~~~~~~~~~~w~~~-~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~-~~~~~~im~~~~~~~~~ 457 (1931)
+.-+|-.- . +... -...-|=+||-|+|+.-+... ..+...++||+||||.-.- ..-.-.+++.+....+
T Consensus 339 G~eVGYsI-R------FEdcTSekTvlKYMTDGmLlREfL~e-pdLasYSViiiDEAHERTL~TDILfgLvKDIar~Rp- 409 (902)
T KOG0923|consen 339 GHEVGYSI-R------FEDCTSEKTVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRP- 409 (902)
T ss_pred ccccceEE-E------eccccCcceeeeeecchhHHHHHhcc-ccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCC-
Confidence 44333211 0 0000 134556799999999766432 5688999999999995432 1122233444544433
Q ss_pred CCCcEEEEEeecCC
Q 000174 458 EKRPSVFGMTASPV 471 (1931)
Q Consensus 458 ~~~p~iLgLTATP~ 471 (1931)
.-++|..|||..
T Consensus 410 --dLKllIsSAT~D 421 (902)
T KOG0923|consen 410 --DLKLLISSATMD 421 (902)
T ss_pred --cceEEeeccccC
Confidence 367899999964
|
|
| >KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.2e-10 Score=135.73 Aligned_cols=119 Identities=18% Similarity=0.221 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcC--CCCC------------CceeEEEEccCCCccccHHH
Q 000174 703 TPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAEL--PSLS------------FVKSASLIGHNNSQEMRTFQ 768 (1931)
Q Consensus 703 s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~--~~l~------------~~~~~~l~G~~~~~~~~~~~ 768 (1931)
++|+..+++++.+- ..-+.++|||.+...+.+.|.++|.+. |.-. ......+.| ..+..+
T Consensus 702 ~pk~V~~~~~~des-~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG-----~t~a~~ 775 (1387)
T KOG1016|consen 702 GPKIVISLEILDES-TQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDG-----TTSAAD 775 (1387)
T ss_pred CCceEEEEeeeccc-cccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccC-----Ccccch
Confidence 35555555555543 345789999999999999999999864 1111 122334555 677889
Q ss_pred HHHHHHHhhcCC---ceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 769 MQETIAKFRDGR---VTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 769 R~~~l~~Fr~G~---~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
|++.|++|++.. .-+|++|..+.-|||+-.++.+|.||..|++.--.|.+-|+.|.|++
T Consensus 776 rekLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~ 837 (1387)
T KOG1016|consen 776 REKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQ 837 (1387)
T ss_pred HHHHHHhccCCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCc
Confidence 999999999532 24889999999999999999999999999999999999999999988
|
|
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-10 Score=140.91 Aligned_cols=65 Identities=28% Similarity=0.341 Sum_probs=55.9
Q ss_pred cccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEE--------EcCCCCCHHHH----------HHhhccCCCC
Q 000174 763 EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVI--------RFDLAKTVLAY----------IQSRGRARKP 824 (1931)
Q Consensus 763 ~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI--------~fD~p~s~~~y----------iQr~GRa~R~ 824 (1931)
-++..+|.++++.--.|.--++|||+|||..|.||++.+|| .||.-..+.+| -||.|||||.
T Consensus 613 LLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRt 692 (1172)
T KOG0926|consen 613 LLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRT 692 (1172)
T ss_pred hcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCC
Confidence 56788889998888899888999999999999999999999 47766666665 4999999998
Q ss_pred CCc
Q 000174 825 GSD 827 (1931)
Q Consensus 825 Gs~ 827 (1931)
|..
T Consensus 693 gpG 695 (1172)
T KOG0926|consen 693 GPG 695 (1172)
T ss_pred CCC
Confidence 766
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-09 Score=136.64 Aligned_cols=135 Identities=18% Similarity=0.124 Sum_probs=98.2
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH
Q 000174 294 EAKEKMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE 373 (1931)
Q Consensus 294 ~~l~~~~~~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~ 373 (1931)
++....--..|++.|.-+.-.++. .-|+.+.||.|||+++.+++..... .+..|-|++|+--||.|-++.+..
T Consensus 69 Ea~~R~lg~r~ydvQlig~l~Ll~-G~VaEM~TGEGKTLvA~l~a~l~AL------~G~~VhvvT~NdyLA~RDae~m~~ 141 (764)
T PRK12326 69 EAAERTLGLRPFDVQLLGALRLLA-GDVIEMATGEGKTLAGAIAAAGYAL------QGRRVHVITVNDYLARRDAEWMGP 141 (764)
T ss_pred HHHHHHcCCCcchHHHHHHHHHhC-CCcccccCCCCHHHHHHHHHHHHHH------cCCCeEEEcCCHHHHHHHHHHHHH
Confidence 344444557789999988876665 4578999999999999998765443 256699999999999998888876
Q ss_pred H---cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHH-----HHHHhc--ccccccceeEEEEeCCCcccCC
Q 000174 374 Q---TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQIL-----LNILRH--SIIKMEAINLLILDECHHAVKK 441 (1931)
Q Consensus 374 ~---~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L-----~d~L~~--~~l~l~~i~lLV~DEaH~~~~~ 441 (1931)
+ +|++|+.+.+++... . ++..-.++|+.+|..-| .|.+.. +......+.+.|+||+|.++-+
T Consensus 142 ly~~LGLsvg~i~~~~~~~-----e-rr~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLID 213 (764)
T PRK12326 142 LYEALGLTVGWITEESTPE-----E-RRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVD 213 (764)
T ss_pred HHHhcCCEEEEECCCCCHH-----H-HHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheec
Confidence 4 589999998876532 1 22224689999998653 333321 1223466889999999988743
|
|
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.7e-10 Score=135.97 Aligned_cols=107 Identities=21% Similarity=0.207 Sum_probs=79.1
Q ss_pred CceEEEEEeehh----HHHHHHHHHhcCCCC--CCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCC
Q 000174 721 DFRAIIFVERVV----AALVLPKVFAELPSL--SFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGL 794 (1931)
Q Consensus 721 ~~k~IIFv~~r~----ta~~L~~~L~~~~~l--~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGl 794 (1931)
..-++||..-.+ ++..+.+.|.++..- ..+.+..|.. .++..-|.+++++-..|.-+++|||++||..|
T Consensus 563 ~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYS-----QLp~dlQ~kiFq~a~~~vRK~IvATNIAETSL 637 (1042)
T KOG0924|consen 563 PGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYS-----QLPADLQAKIFQKAEGGVRKCIVATNIAETSL 637 (1042)
T ss_pred CCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehh-----hCchhhhhhhcccCCCCceeEEEeccchhhce
Confidence 345777877554 344555555554222 3688888888 89999999998887788888999999999999
Q ss_pred CCCCCCEEEEcCC------------------CCCHHHHHHhhccCCCCC--CcEEEEE
Q 000174 795 DIRQCNVVIRFDL------------------AKTVLAYIQSRGRARKPG--SDYILMI 832 (1931)
Q Consensus 795 Dip~~~lVI~fD~------------------p~s~~~yiQr~GRa~R~G--s~~ivlv 832 (1931)
.||++.+||.-.. |-+-..--||.|||||.| ..|.+.+
T Consensus 638 Ti~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYT 695 (1042)
T KOG0924|consen 638 TIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYT 695 (1042)
T ss_pred eecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehh
Confidence 9999999995332 334455579999999965 4466554
|
|
| >cd00048 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.8e-11 Score=111.90 Aligned_cols=68 Identities=40% Similarity=0.524 Sum_probs=61.8
Q ss_pred chHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHH
Q 000174 1853 FTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELL 1926 (1931)
Q Consensus 1853 n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L 1926 (1931)
||++.|+|+|++++|..|.|+++...||.|.+.|++.|.|++ .....|.| +|||+||+.||+.||..|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~---~~~~~g~g---~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGG---KITGEGEG---SSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECC---EEEEEeec---CCHHHHHHHHHHHHHHhC
Confidence 799999999999999999999988999999999999999964 24557888 999999999999999875
|
Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases. |
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=1e-09 Score=151.01 Aligned_cols=137 Identities=20% Similarity=0.245 Sum_probs=95.2
Q ss_pred CCCCCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHH----
Q 000174 299 MPEEQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAE---- 369 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~---- 369 (1931)
.+..++|+-|.++...+.+ +.++|-++||+|||++|++|+...... .++++||-++|+.|..|...
T Consensus 253 ~~~~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~-----~~~~vvIsT~T~~LQ~Ql~~kDiP 327 (928)
T PRK08074 253 MPKYEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKK-----KEEPVVISTYTIQLQQQLLEKDIP 327 (928)
T ss_pred CCCCcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhc-----cCCeEEEEcCCHHHHHHHHHhhHH
Confidence 3457899999997777654 668899999999999999998765542 35789999999999999765
Q ss_pred HHHHHcC--CcEEEEeCCCcc--------------------------------------ccc-----chHHHHh------
Q 000174 370 VIREQTG--YVVGHYCGEMGQ--------------------------------------DFW-----DAQRWQR------ 398 (1931)
Q Consensus 370 ~l~~~~~--l~v~~~~G~~~~--------------------------------------~~~-----~~~~w~~------ 398 (1931)
.+++.++ +++.++.|..+. +.+ ....|..
T Consensus 328 ~L~~~~~~~~~~~~lKGr~nYlcl~k~~~~l~~~~~~~~~~~~~~~ll~Wl~~T~tGD~dEl~~~~~~~~~w~~i~~~~~ 407 (928)
T PRK08074 328 LLQKIFPFPVEAALLKGRSHYLCLRKFEQALQEEDDNYDVALTKAQLLVWLTETETGDLDELNLPSGGKLLWNRIASDGE 407 (928)
T ss_pred HHHHHcCCCceEEEEEcccccccHHHHHHHHhccCCCHHHHHHHHHHHHHHccCCCCCHHHccCCCCCcchHHHhhccCc
Confidence 3555554 345544333210 000 0001222
Q ss_pred --------------------hcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 399 --------------------EFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 399 --------------------~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
....++|||+....|+..+..+.--+...+++|||||||+-+
T Consensus 408 ~c~~~~cp~~~~Cf~~~ar~~a~~AdivItNHalLl~dl~~~~~ilp~~~~lViDEAH~l~d 469 (928)
T PRK08074 408 SDGGKQSPWFSRCFYQRAKNRAKFADLVITNHALLLTDLTSEEPLLPSYEHIIIDEAHHFEE 469 (928)
T ss_pred ccCCCCCCcccccHHHHHHHHHhcCCEEEECHHHHHHHHhhhcccCCCCCeEEEECCchHHH
Confidence 123579999999999887744333356689999999999974
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-09 Score=140.09 Aligned_cols=127 Identities=19% Similarity=0.127 Sum_probs=94.6
Q ss_pred CCCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc---CC
Q 000174 301 EEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT---GY 377 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~---~l 377 (1931)
...|++.|..+-- ++.+.-|+-+.||.|||+++.+|+.-... .+..|-||+|+--||.|-++.+..++ |+
T Consensus 80 Gm~~ydVQliGg~-~Lh~G~iaEM~TGEGKTLvA~l~a~l~al------~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl 152 (913)
T PRK13103 80 GMRHFDVQLIGGM-TLHEGKIAEMRTGEGKTLVGTLAVYLNAL------SGKGVHVVTVNDYLARRDANWMRPLYEFLGL 152 (913)
T ss_pred CCCcchhHHHhhh-HhccCccccccCCCCChHHHHHHHHHHHH------cCCCEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 3677778876532 34578899999999999999998764433 25669999999999999998888754 89
Q ss_pred cEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHH-HHHHhccc------ccccceeEEEEeCCCcccC
Q 000174 378 VVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQIL-LNILRHSI------IKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 378 ~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L-~d~L~~~~------l~l~~i~lLV~DEaH~~~~ 440 (1931)
+|+++.+++.... ++..-.++|+++|...| +|.|+... .....+.++|+||+|.++=
T Consensus 153 ~v~~i~~~~~~~e------rr~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLI 216 (913)
T PRK13103 153 SVGIVTPFQPPEE------KRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILI 216 (913)
T ss_pred EEEEECCCCCHHH------HHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhheec
Confidence 9999988765422 12223599999999886 34443321 1237889999999999974
|
|
| >cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.3e-11 Score=121.56 Aligned_cols=92 Identities=28% Similarity=0.535 Sum_probs=74.3
Q ss_pred cccCCcEEEcccCCCeEEEEeeccCCCCCCCCCCCCCCCCCCccccHHHHHHhhcCccccCCCCceEEeeccccccccCC
Q 000174 1233 GDLEGRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYCKNLLS 1312 (1931)
Q Consensus 1233 ~~l~~~vv~~~~~~~~y~v~~v~~dltp~s~fp~~~g~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL~~~~~~~~~n~l~ 1312 (1931)
.+|.|.+|.++|+++.|.|.+|.++++|.|.|+...+ ...||++||+++||+.|.+++||||++....+..
T Consensus 26 ~~l~g~~V~t~yn~k~Y~I~~I~~~~~p~s~F~~~~~-----~~~S~~~Yy~~kY~i~I~~~~qPLL~~~~k~~~~---- 96 (117)
T cd02845 26 KELIGSIVLTRYNNKTYRIDDIDFDKTPLSTFKKSDG-----TEITFVEYYKKQYNIEITDLNQPLLVSRPKRRDP---- 96 (117)
T ss_pred HHcCCCEEEEeeCCeEEEEeEecCCCCccccCcCCCC-----CeeeHHHHHHHHcCCccccCCCCcEEeecccccc----
Confidence 5678999999999999999999999999999986653 3679999999999999999999999986322110
Q ss_pred CccccccccccccccccccceEEEcCCcccccccCC
Q 000174 1313 PRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHPLP 1348 (1931)
Q Consensus 1313 ~~~~~~~~~~~~~~~~~~k~~~~~L~Pelc~v~~lp 1348 (1931)
....++ .++||||+|.+.+|+
T Consensus 97 -------------~~~~~~--~iyL~pElC~ltglt 117 (117)
T cd02845 97 -------------RGGEKE--PIYLIPELCFLTGLT 117 (117)
T ss_pred -------------CCCCCc--EEEEchHHhhhcCCC
Confidence 001112 489999999998874
|
In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might |
| >PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.8e-11 Score=126.70 Aligned_cols=72 Identities=25% Similarity=0.340 Sum_probs=64.5
Q ss_pred ccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1851 QTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1851 ~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
..||++.|||+||+++... .|.++.+.||+|.+.|++.|.|++..+ +.|.| +|||+|+|+||+.||..|...
T Consensus 107 ~~DpKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~g~~~---g~G~G---~SKKeAEQ~AAk~AL~~L~~~ 178 (183)
T PHA02701 107 TLNPVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVSGKVV---ATASG---CSKKLARHAACADALTILINN 178 (183)
T ss_pred CCCccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEECCEEE---EEEEe---CCHHHHHHHHHHHHHHHHHhh
Confidence 4699999999999999888 799999999999999999999985433 48999 999999999999999998754
|
|
| >smart00358 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.7e-11 Score=108.62 Aligned_cols=66 Identities=39% Similarity=0.563 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHH
Q 000174 1854 TRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELL 1926 (1931)
Q Consensus 1854 ~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L 1926 (1931)
|++.|+|+|++++| .|.|++....||+|.+.|+|.|.|++. ..+.|.| +|||+||+.||+.||..|
T Consensus 1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~~~---~~~~g~g---~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVGGE---YTGEGEG---SSKKEAKQRAAEAALRSL 66 (67)
T ss_pred CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEECCE---EEEEecc---CCHHHHHHHHHHHHHHhc
Confidence 78999999999999 899999888999999999999999753 2347888 999999999999999987
|
|
| >PHA03103 double-strand RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.7e-10 Score=123.15 Aligned_cols=71 Identities=21% Similarity=0.345 Sum_probs=61.9
Q ss_pred ccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1851 QTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1851 ~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
..||++.|||+||+++... |..+.+.||+|.+.|++.|.|++..++ +|.| +|||+|||.||+.||..|...
T Consensus 108 ~kNpKS~LQE~~Qk~~~~~--y~~i~~~Gp~H~p~F~v~V~I~g~~~g---~G~G---~SKKeAEQ~AAk~AL~~L~~~ 178 (183)
T PHA03103 108 DKNPCTVINEYCQITSRDW--SINITSSGPSHSPTFTASVIISGIKFK---PAIG---STKKEAKNNAAKLAMDKILNY 178 (183)
T ss_pred cCChhHHHHHHHHHhCCCe--EEEEEeeCCCCCceEEEEEEECCEEEE---Eeee---CCHHHHHHHHHHHHHHHHHhc
Confidence 3599999999999998774 666788999999999999999865444 7899 999999999999999999653
|
|
| >PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions [] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.7e-10 Score=104.98 Aligned_cols=66 Identities=36% Similarity=0.631 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHcCCCCCcceeecccCCCCC-ceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHH
Q 000174 1854 TRQTLNDICLRRNWPMPLYRCVREGGPAHA-KRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELL 1926 (1931)
Q Consensus 1854 ~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~-~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L 1926 (1931)
|++.|+|+|++.++.+|.|. +...||+|. +.|+++|.|++..++ .|.| +|||+||+.||+.||+.|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~i~~~~~~---~g~g---~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYY-IEEEGPSHHRPRFICTVYIDGKEYG---EGEG---SSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEE-EEEESSSSSSEEEEEEEEETTEEEE---EEEE---SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEE-EEEeCCCCCCceEEEEEEECCEEEe---Eecc---CCHHHHHHHHHHHHHHhC
Confidence 78999999999999888555 545555554 899999999644333 8899 999999999999999987
|
It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A .... |
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-09 Score=112.57 Aligned_cols=132 Identities=21% Similarity=0.331 Sum_probs=81.8
Q ss_pred CEEEEeCCCchHHHHHHH-HHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHH
Q 000174 319 NTIAFLETGAGKTLIAVL-LIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQ 397 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall-~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~ 397 (1931)
-.+|-+.+|+|||.-.+- .+++.+. .+.++|||+|||+++....+.++. ..+..-..... .
T Consensus 6 ~~~~d~hpGaGKTr~vlp~~~~~~i~------~~~rvLvL~PTRvva~em~~aL~~---~~~~~~t~~~~---------~ 67 (148)
T PF07652_consen 6 LTVLDLHPGAGKTRRVLPEIVREAIK------RRLRVLVLAPTRVVAEEMYEALKG---LPVRFHTNARM---------R 67 (148)
T ss_dssp EEEEE--TTSSTTTTHHHHHHHHHHH------TT--EEEEESSHHHHHHHHHHTTT---SSEEEESTTSS----------
T ss_pred eeEEecCCCCCCcccccHHHHHHHHH------ccCeEEEecccHHHHHHHHHHHhc---CCcccCceeee---------c
Confidence 357889999999986554 5555555 367899999999999877777763 33332221111 0
Q ss_pred hhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCC
Q 000174 398 REFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 398 ~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
....+.-|-|+|++.+...+.+ ...+.++++||+||||-. .+..-..+-++.........+++.|||||.-
T Consensus 68 ~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~---Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG 138 (148)
T PF07652_consen 68 THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFT---DPTSIAARGYLRELAESGEAKVIFMTATPPG 138 (148)
T ss_dssp ---SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT-----SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT
T ss_pred cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccC---CHHHHhhheeHHHhhhccCeeEEEEeCCCCC
Confidence 1235667899999999887766 556789999999999986 2433333333333333344679999999873
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.7e-08 Score=124.53 Aligned_cols=112 Identities=21% Similarity=0.269 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCc-
Q 000174 703 TPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRV- 781 (1931)
Q Consensus 703 s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~- 781 (1931)
..|..++++.+.+. +..+..+||.|.+....+.|..+|.. .+++..++.. . +.+++.-+=. +.|..
T Consensus 409 ~~K~~Aii~ei~~~-~~~gqPVLVgT~SIe~SE~ls~~L~~----~gi~h~vLNA-----k--~~e~EA~IIa-~AG~~G 475 (925)
T PRK12903 409 HAKWKAVVKEVKRV-HKKGQPILIGTAQVEDSETLHELLLE----ANIPHTVLNA-----K--QNAREAEIIA-KAGQKG 475 (925)
T ss_pred HHHHHHHHHHHHHH-HhcCCCEEEEeCcHHHHHHHHHHHHH----CCCCceeecc-----c--chhhHHHHHH-hCCCCC
Confidence 46888888877665 35677899999999999999999998 6788888876 2 2333333322 56644
Q ss_pred eEEEEecccccCCCCCCCC--------EEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 782 TLLVATSVAEEGLDIRQCN--------VVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 782 ~vLVaTdVaeeGlDip~~~--------lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
.|-|||++|+||-||.--. +||.-..|.|.+-.-|.+|||||.|..
T Consensus 476 aVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDp 529 (925)
T PRK12903 476 AITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDV 529 (925)
T ss_pred eEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCC
Confidence 5999999999999998644 899999999999999999999999866
|
|
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.7e-09 Score=124.57 Aligned_cols=103 Identities=17% Similarity=0.246 Sum_probs=84.8
Q ss_pred CCceEEEEEeehhHHHHHHHHHhcCCC-C-CCc--eeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCC
Q 000174 720 EDFRAIIFVERVVAALVLPKVFAELPS-L-SFV--KSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLD 795 (1931)
Q Consensus 720 ~~~k~IIFv~~r~ta~~L~~~L~~~~~-l-~~~--~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlD 795 (1931)
.+.|+|-||..|..++.|....+++-. . +.+ .+..+-| +-..++|.++-.+.-.|+..-+|||+++|-|||
T Consensus 524 ~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRG-----GY~A~DRRKIE~~~F~G~L~giIaTNALELGID 598 (1034)
T KOG4150|consen 524 HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRG-----GYIAEDRRKIESDLFGGKLCGIIATNALELGID 598 (1034)
T ss_pred cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcC-----ccchhhHHHHHHHhhCCeeeEEEecchhhhccc
Confidence 368999999999999888766655310 0 111 1233445 778889999999999999999999999999999
Q ss_pred CCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 796 IRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 796 ip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
|...+.|+....|.+...+-|..|||||.+..
T Consensus 599 IG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~ 630 (1034)
T KOG4150|consen 599 IGHLDAVLHLGFPGSIANLWQQAGRAGRRNKP 630 (1034)
T ss_pred cccceeEEEccCchhHHHHHHHhccccccCCC
Confidence 99999999999999999999999999997765
|
|
| >PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.3e-10 Score=118.41 Aligned_cols=106 Identities=30% Similarity=0.543 Sum_probs=87.5
Q ss_pred ccccCCcEEEcccCC--CeEEEEeeccCCCCCCCCCCCCCCCCCCccccHHHHHHhhcCccccCCCCceEEeeccccccc
Q 000174 1232 AGDLEGRIVTAAHSG--KRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYCKN 1309 (1931)
Q Consensus 1232 ~~~l~~~vv~~~~~~--~~y~v~~v~~dltp~s~fp~~~g~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL~~~~~~~~~n 1309 (1931)
.+.|.|..|.+.|.+ +.|.|.+|.++.+|.+.|+...| .+.|+++||+++||++|.+++||||.++.....
T Consensus 26 ~~~lkg~~V~~~~~~~~r~~~I~~i~~~~~~~~~F~~~~g-----~~itv~eYf~~~Y~i~L~~p~~Pll~~~~~~~~-- 98 (135)
T PF02170_consen 26 ERALKGLKVTTTYNNNKRTYKIKGISFDPAPESTFPDNDG-----KEITVAEYFKEKYNIRLKYPDLPLLNVKSKKKK-- 98 (135)
T ss_dssp HHHHTTEEEEETTTTCCEEEEEEEEEEEETTTSEEEETTS-----EEEEHHHHHHHTCT---SSTTSEEEEECSTTTT--
T ss_pred HHHcCCcEEEEecCCCceEEEEeEEECCCCcceeeecCCC-----ceEEhHHHHHhhhhcccccCCCCeEEeccCCCC--
Confidence 456899999999998 89999999999999999987755 689999999999999999999999998642221
Q ss_pred cCCCccccccccccccccccccceEEEcCCcccccccCChHHHHHhhchhhHHHHHHH
Q 000174 1310 LLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHPLPGSLVRGAQRLPSIMRRVES 1367 (1931)
Q Consensus 1310 ~l~~~~~~~~~~~~~~~~~~~k~~~~~L~Pelc~v~~lp~~~~~~~~~lPsi~~rl~~ 1367 (1931)
..++||||+|.+.+.+...|.....+|++|+|.+.
T Consensus 99 -----------------------~~~~lP~Elc~i~~~q~~~~~~~~~~~s~m~r~~~ 133 (135)
T PF02170_consen 99 -----------------------QPIYLPPELCFIVPGQRYKKKLFTCQPSIMIRFAC 133 (135)
T ss_dssp -----------------------TCEEEECCGEEEETTTBB-SS--HHHHHHHHHHHS
T ss_pred -----------------------ceEEEChhHhcccCCcHHHHhccHHHHHHHHHHHh
Confidence 13689999999999999999999999999999864
|
It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A .... |
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.7e-07 Score=124.62 Aligned_cols=70 Identities=21% Similarity=0.190 Sum_probs=57.9
Q ss_pred cCCCCCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH
Q 000174 298 KMPEEQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR 372 (1931)
Q Consensus 298 ~~~~~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~ 372 (1931)
.....++|+.|.+++..+.. +.+++-+|||+|||+.|++|+...... .+.+++|.++|+.|..|..++..
T Consensus 10 ~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~-----~~~~viist~t~~lq~q~~~~~~ 84 (654)
T COG1199 10 AFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYARE-----EGKKVIISTRTKALQEQLLEEDL 84 (654)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHH-----cCCcEEEECCCHHHHHHHHHhhc
Confidence 35678999999999887654 449999999999999999998877654 24779999999999999776553
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.9e-07 Score=118.52 Aligned_cols=91 Identities=13% Similarity=0.150 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhh----cCCc
Q 000174 706 VQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFR----DGRV 781 (1931)
Q Consensus 706 v~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr----~G~~ 781 (1931)
...+.+.|..... ...+++||..+....+.++..|... .+ ....+.| . ..+.+++++|+ .|+-
T Consensus 520 ~~~~~~~i~~l~~-~~gg~LVlFtSy~~l~~v~~~l~~~---~~-~~ll~Q~-----~---~~~~~ll~~f~~~~~~~~~ 586 (697)
T PRK11747 520 TAEMAEFLPELLE-KHKGSLVLFASRRQMQKVADLLPRD---LR-LMLLVQG-----D---QPRQRLLEKHKKRVDEGEG 586 (697)
T ss_pred HHHHHHHHHHHHh-cCCCEEEEeCcHHHHHHHHHHHHHh---cC-CcEEEeC-----C---chHHHHHHHHHHHhccCCC
Confidence 3455555555433 3445899999999999999888742 12 2334455 2 23567887776 4677
Q ss_pred eEEEEecccccCCCCCC--CCEEEEcCCCC
Q 000174 782 TLLVATSVAEEGLDIRQ--CNVVIRFDLAK 809 (1931)
Q Consensus 782 ~vLVaTdVaeeGlDip~--~~lVI~fD~p~ 809 (1931)
.||++|....||||+|+ |.+||..-+|.
T Consensus 587 ~VL~g~~sf~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 587 SVLFGLQSFAEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred eEEEEeccccccccCCCCceEEEEEEcCCC
Confidence 89999999999999998 88898877663
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-08 Score=131.64 Aligned_cols=129 Identities=19% Similarity=0.159 Sum_probs=89.9
Q ss_pred HHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc------C
Q 000174 308 QLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT------G 376 (1931)
Q Consensus 308 Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~------~ 376 (1931)
|.+++..+.+ +.+++.++||+|||++|++|+...+.. ..+.++||++||++|+.|+.+.+..+. +
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~----~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~ 77 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKE----RPDQKIAIAVPTLALMGQLWSELERLTAEGLAGP 77 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHh----ccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCC
Confidence 6666666543 568899999999999999998776542 235789999999999999998877543 3
Q ss_pred CcEEEEeCCCcc-----------------------------------------------------cc-------------
Q 000174 377 YVVGHYCGEMGQ-----------------------------------------------------DF------------- 390 (1931)
Q Consensus 377 l~v~~~~G~~~~-----------------------------------------------------~~------------- 390 (1931)
+++..+.|..+. +.
T Consensus 78 i~~~~lkGr~nYlCl~rl~~~l~~~~~~~~~~i~~W~~~T~~~~~~~~~~~~~~~~~~~~~~~tGD~~el~~~~~~~~~~ 157 (636)
T TIGR03117 78 VQAGFFPGSQEFVSPGALQELLDQSGYDKDPAVQLWIGQGGPLIHEAALIRCMSDAPTKMHWMTHDLKAVATLLNRQDDV 157 (636)
T ss_pred eeEEEEECCcccccHHHHHHHhcccchhHHHHHHHHHhcCCccccccchhccccchhhccCCCCCCHhhccCCcCcchhh
Confidence 444444333210 00
Q ss_pred c----------chHHHHhh---cCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 391 W----------DAQRWQRE---FDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 391 ~----------~~~~w~~~---~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
+ .....++. ...++|||+++..|+..+..+.-.+...+.||||||||+.+
T Consensus 158 ~~~~~~~~~~~~~~~aR~~~~~a~~AdivItNHalL~~~~~~~~~iLP~~~~lIiDEAH~L~d 220 (636)
T TIGR03117 158 TLAIREDDEDKRLVESREYEAEARRCRILFCTHAMLGLAFRDKWGLLPQPDILIVDEAHLFEQ 220 (636)
T ss_pred hccccCCCcccHHHHHHHHhhccccCCEEEECHHHHHHHhhhhcCCCCCCCEEEEeCCcchHH
Confidence 0 00011111 36779999999999987755433456689999999999974
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-07 Score=111.32 Aligned_cols=162 Identities=15% Similarity=0.095 Sum_probs=97.1
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH
Q 000174 294 EAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR 372 (1931)
Q Consensus 294 ~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~ 372 (1931)
+-+++......+.++.+-+..+.+ +-++++++||||||...--...+..... ...|..--|.+.-+.+.+....
T Consensus 38 ~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~-----~~~v~CTQprrvaamsva~RVa 112 (699)
T KOG0925|consen 38 DILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH-----LTGVACTQPRRVAAMSVAQRVA 112 (699)
T ss_pred HHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh-----ccceeecCchHHHHHHHHHHHH
Confidence 344444455566666666666666 6678999999999865433333322211 1447778899999999888888
Q ss_pred HHcCCcEEEEeCCCcccccchHHHHhhcC-CccEEEEcHHHHHHHHhcccccccceeEEEEeCCCccc-CCCcHHHHHHH
Q 000174 373 EQTGYVVGHYCGEMGQDFWDAQRWQREFD-TKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAV-KKHPYSLVMSE 450 (1931)
Q Consensus 373 ~~~~l~v~~~~G~~~~~~~~~~~w~~~~~-~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~-~~~~~~~im~~ 450 (1931)
.-+++..+.-.|-.-. +..... +.-.-.||-+.|+...... --+.++++||+||||.-. ......-.+++
T Consensus 113 dEMDv~lG~EVGysIr-------fEdC~~~~T~Lky~tDgmLlrEams~-p~l~~y~viiLDeahERtlATDiLmGllk~ 184 (699)
T KOG0925|consen 113 DEMDVTLGEEVGYSIR-------FEDCTSPNTLLKYCTDGMLLREAMSD-PLLGRYGVIILDEAHERTLATDILMGLLKE 184 (699)
T ss_pred HHhccccchhcccccc-------ccccCChhHHHHHhcchHHHHHHhhC-cccccccEEEechhhhhhHHHHHHHHHHHH
Confidence 7776665554443210 000000 0111256666666544332 247899999999999643 22233344555
Q ss_pred HHhhcCCCCCcEEEEEeecCC
Q 000174 451 FYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 451 ~~~~~~~~~~p~iLgLTATP~ 471 (1931)
.....+ .-+++.||||..
T Consensus 185 v~~~rp---dLk~vvmSatl~ 202 (699)
T KOG0925|consen 185 VVRNRP---DLKLVVMSATLD 202 (699)
T ss_pred HHhhCC---CceEEEeecccc
Confidence 554433 368999999964
|
|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-06 Score=115.43 Aligned_cols=171 Identities=16% Similarity=0.147 Sum_probs=102.8
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHhc-------cC--EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHH
Q 000174 294 EAKEKMPEEQARPYQLDVLEQAKK-------KN--TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLV 364 (1931)
Q Consensus 294 ~~l~~~~~~~~~~~Q~eai~~~l~-------~n--~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv 364 (1931)
+.+.+..-..-+.+|-.|+..+.. .. ++-.+.||+|||++=.-++..+.. ...+.|..|-.-.|.|.
T Consensus 399 k~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd----~~~g~RfsiALGLRTLT 474 (1110)
T TIGR02562 399 KYFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRD----DKQGARFAIALGLRSLT 474 (1110)
T ss_pred hhhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCC----CCCCceEEEEcccccee
Confidence 444444445568899999999865 12 456799999999987766654433 34455888888899999
Q ss_pred HHHHHHHHHHcCCc---EEEEeCCCcc----------------------cc------------cchH-------HHH---
Q 000174 365 YQQAEVIREQTGYV---VGHYCGEMGQ----------------------DF------------WDAQ-------RWQ--- 397 (1931)
Q Consensus 365 ~Q~~~~l~~~~~l~---v~~~~G~~~~----------------------~~------------~~~~-------~w~--- 397 (1931)
-|.-+++++.+++. ..++.|+..+ .. |... .|.
T Consensus 475 LQTGda~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~ 554 (1110)
T TIGR02562 475 LQTGHALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLD 554 (1110)
T ss_pred ccchHHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccC
Confidence 99999998877543 4444443210 00 0000 010
Q ss_pred ---hhcCCccEEEEcHHHHHHHHh--c-ccc--cccc--eeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEe
Q 000174 398 ---REFDTKQVLVMTAQILLNILR--H-SII--KMEA--INLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMT 467 (1931)
Q Consensus 398 ---~~~~~~~IlV~Tpq~L~d~L~--~-~~l--~l~~--i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLT 467 (1931)
+.+-...|+|||+..++-... + +.. .+-. =+.|||||+|-.-.. .+.. +..+++-.. .-..++++||
T Consensus 555 ~k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~~~-L~rlL~w~~-~lG~~VlLmS 631 (1110)
T TIGR02562 555 DKEKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DLPA-LLRLVQLAG-LLGSRVLLSS 631 (1110)
T ss_pred hhhhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HHHH-HHHHHHHHH-HcCCCEEEEe
Confidence 011146899999988886652 2 111 1112 248999999988431 2222 333333211 1235699999
Q ss_pred ecCC
Q 000174 468 ASPV 471 (1931)
Q Consensus 468 ATP~ 471 (1931)
||..
T Consensus 632 ATLP 635 (1110)
T TIGR02562 632 ATLP 635 (1110)
T ss_pred CCCC
Confidence 9954
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.2e-08 Score=106.12 Aligned_cols=67 Identities=30% Similarity=0.487 Sum_probs=59.8
Q ss_pred CCCChHHHHHHHHhhcCCceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhh
Q 000174 1764 PMHPVRELQERCQQQAEGLEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEK 1830 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 1830 (1931)
..|||+.||||||+++..+.|++.. .| +.|++.|+|+|..+++|.|.|||+|+++||+.||..|...
T Consensus 107 ~~DpKS~LQE~~Q~~~~~l~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~~ 178 (183)
T PHA02701 107 TLNPVSAVNEFCMRTHRPLEFCETRSGGHDHCPLFTCTIVVSGKVVATASGCSKKLARHAACADALTILINN 178 (183)
T ss_pred CCCccHHHHHHHHhcCCCCeEEEEEeECCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHHHhh
Confidence 5799999999999988777998654 35 5899999999999999999999999999999999998653
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.8e-07 Score=115.39 Aligned_cols=134 Identities=20% Similarity=0.103 Sum_probs=94.2
Q ss_pred hhhcCCCCCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH-
Q 000174 295 AKEKMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE- 373 (1931)
Q Consensus 295 ~l~~~~~~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~- 373 (1931)
+....-...|++.|.-+.- ++.++-|+.+.||-|||+++.+|+.-... .+..|-||+++..||.+-++.+..
T Consensus 68 a~~R~lG~r~ydvQlig~l-~L~~G~IaEm~TGEGKTL~a~l~ayl~aL------~G~~VhVvT~NdyLA~RD~e~m~pv 140 (870)
T CHL00122 68 ASFRTLGLRHFDVQLIGGL-VLNDGKIAEMKTGEGKTLVATLPAYLNAL------TGKGVHIVTVNDYLAKRDQEWMGQI 140 (870)
T ss_pred HHHHHhCCCCCchHhhhhH-hhcCCccccccCCCCchHHHHHHHHHHHh------cCCceEEEeCCHHHHHHHHHHHHHH
Confidence 3333444668888887642 34578899999999999999998742222 245699999999999886666654
Q ss_pred --HcCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHH-----HHHHHhc--ccccccceeEEEEeCCCcccCC
Q 000174 374 --QTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQI-----LLNILRH--SIIKMEAINLLILDECHHAVKK 441 (1931)
Q Consensus 374 --~~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~-----L~d~L~~--~~l~l~~i~lLV~DEaH~~~~~ 441 (1931)
++|+.|+++.+++.... ++..-.++|+.+|..- |.|.+.. .......+.+.|+||+|.++=+
T Consensus 141 y~~LGLsvg~i~~~~~~~e------rr~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLID 211 (870)
T CHL00122 141 YRFLGLTVGLIQEGMSSEE------RKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILID 211 (870)
T ss_pred HHHcCCceeeeCCCCChHH------HHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheec
Confidence 67999999988765422 1222468999999864 3443321 1123466889999999998743
|
|
| >KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-08 Score=123.82 Aligned_cols=100 Identities=25% Similarity=0.449 Sum_probs=80.6
Q ss_pred ccccCCcEEEcccCCCeEEEEeeccCCCCCCCCCCCCCCCCCCccccHHHHHHhhcCccccCCCCceEEeeccccccccC
Q 000174 1232 AGDLEGRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYCKNLL 1311 (1931)
Q Consensus 1232 ~~~l~~~vv~~~~~~~~y~v~~v~~dltp~s~fp~~~g~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL~~~~~~~~~n~l 1311 (1931)
...+.|.||.|.||++.|.|++|+|+.+|.|.|...+| ..||.+||+++|+++|.+.+||+|..+.-.++.
T Consensus 281 ~~~~~glivLT~YNNktyriddvD~~~tP~stF~k~dg------eIs~veYyk~qYni~I~dl~QPlliS~~k~K~~--- 351 (845)
T KOG1042|consen 281 NKNVIGLIVLTRYNNKTYRIDDVDFSQTPLSTFKKDDG------EISFVEYYKKQYNIEITDLNQPLLISEPKDKRP--- 351 (845)
T ss_pred HHHhcceEEEEecCCceeeeeccccCcCccceeeecCc------eeeHhHHHHHhcCeEEeeCCcceEeccCcccCC---
Confidence 34678999999999999999999999999999987764 679999999999999999999999965322211
Q ss_pred CCccccccccccccccccccceEEEcCCcccccccCChHHHHHhh
Q 000174 1312 SPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHPLPGSLVRGAQ 1356 (1931)
Q Consensus 1312 ~~~~~~~~~~~~~~~~~~~k~~~~~L~Pelc~v~~lp~~~~~~~~ 1356 (1931)
..... -..+|+||+|++.++...|-.-..
T Consensus 352 --------------~g~~~--q~~~lIPELc~~TGLtd~mr~dF~ 380 (845)
T KOG1042|consen 352 --------------KGEPP--QLAMLIPELCFLTGLTDEMRSDFQ 380 (845)
T ss_pred --------------CCCCc--cceeeehhhhhccCCcHHHHhhHH
Confidence 00111 146899999999999988755444
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.6e-08 Score=114.39 Aligned_cols=73 Identities=25% Similarity=0.317 Sum_probs=55.7
Q ss_pred CCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHH
Q 000174 302 EQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQ 374 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~ 374 (1931)
.+|||.|.+.+..+.. .++|+.+|||+|||+++++++...+..........+++++++|..+..|...++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 3569999997777654 779999999999999999998766553211111237999999999988877777654
|
|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.6e-08 Score=114.39 Aligned_cols=73 Identities=25% Similarity=0.317 Sum_probs=55.7
Q ss_pred CCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHH
Q 000174 302 EQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQ 374 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~ 374 (1931)
.+|||.|.+.+..+.. .++|+.+|||+|||+++++++...+..........+++++++|..+..|...++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 3569999997777654 779999999999999999998766553211111237999999999988877777654
|
|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.3e-06 Score=111.21 Aligned_cols=130 Identities=19% Similarity=0.114 Sum_probs=94.3
Q ss_pred CCCCCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHH---HHHHHc
Q 000174 299 MPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAE---VIREQT 375 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~---~l~~~~ 375 (1931)
.-...|++.|..+-- ++.+.-|+.+.||-|||+++.+|+.-... .++.|-||++.--||..=++ .+-+++
T Consensus 81 ~lG~r~ydVQliGgl-~Lh~G~IAEM~TGEGKTL~atlpaylnAL------~GkgVhVVTvNdYLA~RDae~m~~vy~~L 153 (939)
T PRK12902 81 VLGMRHFDVQLIGGM-VLHEGQIAEMKTGEGKTLVATLPSYLNAL------TGKGVHVVTVNDYLARRDAEWMGQVHRFL 153 (939)
T ss_pred HhCCCcchhHHHhhh-hhcCCceeeecCCCChhHHHHHHHHHHhh------cCCCeEEEeCCHHHHHhHHHHHHHHHHHh
Confidence 344667777766542 34578899999999999999998754332 24559999999999977444 455578
Q ss_pred CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHH-----HHHHhc--ccccccceeEEEEeCCCcccCC
Q 000174 376 GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQIL-----LNILRH--SIIKMEAINLLILDECHHAVKK 441 (1931)
Q Consensus 376 ~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L-----~d~L~~--~~l~l~~i~lLV~DEaH~~~~~ 441 (1931)
|+.|+++.+++.... ++..-.++|+.+|...| .|.+.. +......+++.|+||+|.++=+
T Consensus 154 GLtvg~i~~~~~~~e------rr~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILID 220 (939)
T PRK12902 154 GLSVGLIQQDMSPEE------RKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILID 220 (939)
T ss_pred CCeEEEECCCCChHH------HHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeec
Confidence 999999988765421 22335899999999887 555543 2234577899999999999743
|
|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.7e-06 Score=116.61 Aligned_cols=140 Identities=16% Similarity=0.210 Sum_probs=97.5
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHh
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQR 398 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~ 398 (1931)
+.+|+=-||||||+..+..+..++.. ...+.|+|||-++.|-.|..+++..+.......- ... +.+...+
T Consensus 275 ~G~IWHtqGSGKTlTm~~~A~~l~~~----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~-~~~-----s~~~Lk~ 344 (962)
T COG0610 275 GGYIWHTQGSGKTLTMFKLARLLLEL----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP-KAE-----STSELKE 344 (962)
T ss_pred ceEEEeecCCchHHHHHHHHHHHHhc----cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc-ccc-----CHHHHHH
Confidence 58999999999999998887766664 4567899999999999999999998643221111 111 2233334
Q ss_pred hcC--CccEEEEcHHHHHHHHhccc--ccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCC
Q 000174 399 EFD--TKQVLVMTAQILLNILRHSI--IKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLK 474 (1931)
Q Consensus 399 ~~~--~~~IlV~Tpq~L~d~L~~~~--l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~ 474 (1931)
.+. ...|+|+|-|.|-..+.... ..-.+--++|+|||||.-.. -....|+..+.. ...+|+|+||+...
T Consensus 345 ~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G-~~~~~~~~~~~~------a~~~gFTGTPi~~~ 417 (962)
T COG0610 345 LLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYG-ELAKLLKKALKK------AIFIGFTGTPIFKE 417 (962)
T ss_pred HHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcccc-HHHHHHHHHhcc------ceEEEeeCCccccc
Confidence 443 34899999999998876541 12233348999999998652 333444443332 56899999999755
Q ss_pred C
Q 000174 475 G 475 (1931)
Q Consensus 475 ~ 475 (1931)
.
T Consensus 418 d 418 (962)
T COG0610 418 D 418 (962)
T ss_pred c
Confidence 4
|
|
| >PHA03103 double-strand RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.4e-08 Score=103.70 Aligned_cols=67 Identities=25% Similarity=0.306 Sum_probs=58.5
Q ss_pred CCCChHHHHHHHHhhcCCceeEEeccC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhh
Q 000174 1764 PMHPVRELQERCQQQAEGLEYKASRSG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEK 1830 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~~~y~~~~~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 1830 (1931)
.+||++.||||||+++....|.+...| +.|++.|.|+|..+++|.|.|||+|++.||+.||..|...
T Consensus 108 ~kNpKS~LQE~~Qk~~~~~y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~~ 178 (183)
T PHA03103 108 DKNPCTVINEYCQITSRDWSINITSSGPSHSPTFTASVIISGIKFKPAIGSTKKEAKNNAAKLAMDKILNY 178 (183)
T ss_pred cCChhHHHHHHHHHhCCCeEEEEEeeCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhc
Confidence 569999999999998877755544455 4799999999999999999999999999999999999653
|
|
| >smart00358 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.7e-08 Score=88.56 Aligned_cols=61 Identities=34% Similarity=0.373 Sum_probs=55.1
Q ss_pred ChHHHHHHHHhhcCCceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 000174 1767 PVRELQERCQQQAEGLEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVL 1827 (1931)
Q Consensus 1767 P~~~L~e~~~~~~~~~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L 1827 (1931)
|++.|+|+|++.+..+.|+... .| +.|+|.|.++|..+++|.|.|||+||+.||+.||..|
T Consensus 1 p~~~L~e~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 1 PKSLLQELAQKRGLPPEYELVKEEGPDHAPRFTVTVKVGGEYTGEGEGSSKKEAKQRAAEAALRSL 66 (67)
T ss_pred CchHHHHHHHHCCCCCEEEEEeeeCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHhc
Confidence 7899999999998888998764 33 3799999999999999999999999999999999876
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.3e-06 Score=113.61 Aligned_cols=144 Identities=22% Similarity=0.284 Sum_probs=106.9
Q ss_pred CcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHH----HHHHHHHcCC
Q 000174 304 ARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQ----AEVIREQTGY 377 (1931)
Q Consensus 304 ~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~----~~~l~~~~~l 377 (1931)
..++|.++++.+.+ .++++++++|||||+++-+++.+ +....+++.++|.-+.+.-+ ...|...+|+
T Consensus 1144 ~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~ 1216 (1674)
T KOG0951|consen 1144 FNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGL 1216 (1674)
T ss_pred cCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-------CccceEEEEecchHHHHHHHHHHHHHhhccccCc
Confidence 37788888888877 78999999999999999998764 23467899999988776554 4455555689
Q ss_pred cEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCc--------HHHHHH
Q 000174 378 VVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHP--------YSLVMS 449 (1931)
Q Consensus 378 ~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~--------~~~im~ 449 (1931)
++..+.|+...+. +++...+|+|+||+.+-. ++ ....+++.|.||.|.+.+.++ .+.+..
T Consensus 1217 ~~~~l~ge~s~~l-------kl~~~~~vii~tpe~~d~-lq----~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~ 1284 (1674)
T KOG0951|consen 1217 RIVKLTGETSLDL-------KLLQKGQVIISTPEQWDL-LQ----SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIAS 1284 (1674)
T ss_pred eEEecCCccccch-------HHhhhcceEEechhHHHH-Hh----hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHH
Confidence 9999999877653 344678999999999853 43 578899999999999885321 122222
Q ss_pred HHHhhcCCCCCcEEEEEeecCCC
Q 000174 450 EFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 450 ~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
.+. +..|+++||-+..+
T Consensus 1285 q~~------k~ir~v~ls~~lan 1301 (1674)
T KOG0951|consen 1285 QLE------KKIRVVALSSSLAN 1301 (1674)
T ss_pred HHH------hheeEEEeehhhcc
Confidence 222 23678888877654
|
|
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.65 E-value=5e-07 Score=108.90 Aligned_cols=97 Identities=24% Similarity=0.283 Sum_probs=77.5
Q ss_pred CCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhc--CCceEEEEecccccCCCCC
Q 000174 720 EDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRD--GRVTLLVATSVAEEGLDIR 797 (1931)
Q Consensus 720 ~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~--G~~~vLVaTdVaeeGlDip 797 (1931)
++.+++-|... ..-.+...+.+. ...++++|.| +++.+.|.+--..|++ ++++||||||+++.|+|+
T Consensus 357 ~GDCvV~FSkk--~I~~~k~kIE~~---g~~k~aVIYG-----sLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL- 425 (700)
T KOG0953|consen 357 PGDCVVAFSKK--DIFTVKKKIEKA---GNHKCAVIYG-----SLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL- 425 (700)
T ss_pred CCCeEEEeehh--hHHHHHHHHHHh---cCcceEEEec-----CCCCchhHHHHHHhCCCCCccceEEeeccccccccc-
Confidence 45566666543 334444555542 3456999999 9999999888899996 999999999999999999
Q ss_pred CCCEEEEcCCC---------CCHHHHHHhhccCCCCCCc
Q 000174 798 QCNVVIRFDLA---------KTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 798 ~~~lVI~fD~p---------~s~~~yiQr~GRa~R~Gs~ 827 (1931)
+++.||.|++- -+..+..|-.|||||.|++
T Consensus 426 ~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~ 464 (700)
T KOG0953|consen 426 NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSK 464 (700)
T ss_pred ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccC
Confidence 78999998875 4677889999999999988
|
|
| >cd00048 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.4e-07 Score=87.08 Aligned_cols=62 Identities=35% Similarity=0.366 Sum_probs=54.0
Q ss_pred CChHHHHHHHHhh-cCCceeEEe-ccC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 000174 1766 HPVRELQERCQQQ-AEGLEYKAS-RSG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVL 1827 (1931)
Q Consensus 1766 ~P~~~L~e~~~~~-~~~~~y~~~-~~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L 1827 (1931)
||++.|+|+|+++ ...+.|+.. ..| +.|+|.|.++|..+++|.|.|||+||+.||+.||..|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 6999999999998 446799873 333 4799999999999999999999999999999999865
|
Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases. |
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.1e-08 Score=127.96 Aligned_cols=81 Identities=21% Similarity=0.300 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhh---c
Q 000174 702 VTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFR---D 778 (1931)
Q Consensus 702 ~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr---~ 778 (1931)
.+.|+..|...+++. +..++|++||.+...+.+.|..++.. .+ ....+.| ..+...|+.++++|+ +
T Consensus 613 ~~~k~~~l~~~~~~l-~~~ghrvl~~~q~~~~ldlled~~~~----~~-~~~r~dG-----~~~~~~rq~ai~~~n~~~~ 681 (696)
T KOG0383|consen 613 ASGKLTLLLKMLKKL-KSSGHRVLIFSQMIHMLDLLEDYLTY----EG-KYERIDG-----PITGPERQAAIDRFNAPGS 681 (696)
T ss_pred HHHHHHHHHHHHHHH-HhcchhhHHHHHHHHHHHHhHHHHhc----cC-cceeccC-----CccchhhhhhccccCCCCc
Confidence 367888888888776 67899999999999999999999987 55 8889999 778889999999999 3
Q ss_pred CCceEEEEecccccC
Q 000174 779 GRVTLLVATSVAEEG 793 (1931)
Q Consensus 779 G~~~vLVaTdVaeeG 793 (1931)
....+|.+|.+++-|
T Consensus 682 ~~~cfllstra~g~g 696 (696)
T KOG0383|consen 682 NQFCFLLSTRAGGLG 696 (696)
T ss_pred cceEEEeecccccCC
Confidence 455699999988766
|
|
| >PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions [] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.9e-07 Score=84.79 Aligned_cols=61 Identities=34% Similarity=0.446 Sum_probs=53.2
Q ss_pred ChHHHHHHHHhhcCCceeEEe-ccC-----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 000174 1767 PVRELQERCQQQAEGLEYKAS-RSG-----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVL 1827 (1931)
Q Consensus 1767 P~~~L~e~~~~~~~~~~y~~~-~~g-----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L 1827 (1931)
|++.|+|+|++.+..+.|... ..+ +.|+|+|.|+|..++.|.|.|||+||+.||+.||..|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGEGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeEeccCCHHHHHHHHHHHHHHhC
Confidence 789999999999988866533 222 3799999999999999999999999999999999986
|
It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A .... |
| >KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.4e-07 Score=105.89 Aligned_cols=152 Identities=22% Similarity=0.270 Sum_probs=100.0
Q ss_pred CCCChHHHHHHHHhhcCC-ceeEEeccC---CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhhhhhhc--
Q 000174 1764 PMHPVRELQERCQQQAEG-LEYKASRSG---NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEKETAEAKE-- 1837 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~-~~y~~~~~g---~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~~-- 1837 (1931)
-+.-+..|+|++|+..+. +.|++.... ..|...|.+++..+|+|.|.|||.||..||+.+|.+|.-.-......
T Consensus 374 gks~vCiLhEy~q~~lk~~pvyef~e~~n~stpysa~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLIPd~~~~~~n~~ 453 (650)
T KOG4334|consen 374 GKSKVCILHEYAQQCLKSLPVYEFAENDNNSTPYSAGVLPDLFPYGSGVGASKKTAKLVAARDTLEILIPDLRVSEDNVC 453 (650)
T ss_pred CceeeehHHHHHHHHhhhcceeehhhccCCCCcccccccccccccccccccchHHHHHHHHHHHHHHhcchhhhcccccc
Confidence 345678999999987665 488764332 36999999999999999999999999999999999996432111110
Q ss_pred --cCCcCCcccC------CCCccchHHHHHHHHHHcCCCCCcceeecc------------------cCCCCCceeEEEEE
Q 000174 1838 --KGDENGKKRK------NGTQTFTRQTLNDICLRRNWPMPLYRCVRE------------------GGPAHAKRFTYAVR 1891 (1931)
Q Consensus 1838 --~~~~~~~~~~------~~~~~n~~~~L~e~~~~~~~~~p~y~~~~~------------------~Gp~h~~~F~~~~~ 1891 (1931)
+..+.+..+. .-...+ ..+.|+|.+...+.| |.++.+ .|-....+|++.|-
T Consensus 454 d~k~~~~~k~q~~le~F~~I~Ied--prv~e~ctk~~~psP-y~iL~~cl~Rn~g~~d~~ik~E~i~~~nqkse~im~~G 530 (650)
T KOG4334|consen 454 DGKVEEDGKQQGFLELFKKIKIED--PRVVEMCTKCAIPSP-YNILRDCLSRNLGWNDLVIKKEMIGNGNQKSEVIMILG 530 (650)
T ss_pred cccccccccchhHHHHhhcccccC--chHHHHhhhcCCCCH-HHHHHHHHHhhcCCcceeeeeeccCCCCccceeEeeec
Confidence 0001111000 000122 245677777777777 654432 23344566777664
Q ss_pred EEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHh
Q 000174 1892 VNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLN 1927 (1931)
Q Consensus 1892 v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~ 1927 (1931)
-. +.++.. ++|+++||.|.+..|+.|+
T Consensus 531 kh------t~~~~c---knkr~gkQlASQ~ilq~lH 557 (650)
T KOG4334|consen 531 KH------TEEAEC---KNKRQGKQLASQRILQKLH 557 (650)
T ss_pred cc------eeeeee---echhHHHHHHHHHHHHHhC
Confidence 32 335555 7799999999999999875
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.9e-05 Score=101.96 Aligned_cols=131 Identities=16% Similarity=0.185 Sum_probs=85.1
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc--CCcEEEEeCCCcccccchHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT--GYVVGHYCGEMGQDFWDAQRWQ 397 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~--~l~v~~~~G~~~~~~~~~~~w~ 397 (1931)
.+|-+|+|||||.+.+-++.+.+. .+..++|+|+..+.|+.+.+..++... |+. .+....... .
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~-----~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv--~Y~d~~~~~------i- 117 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALK-----NPDKSVLVVSHRRSLTKSLAERFKKAGLSGFV--NYLDSDDYI------I- 117 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhcc-----CCCCeEEEEEhHHHHHHHHHHHHhhcCCCcce--eeecccccc------c-
Confidence 588999999999988777776543 346789999999999999999998632 332 222111100 0
Q ss_pred hhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHH-------HhhcCCCCCcEEEEEeecC
Q 000174 398 REFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEF-------YHTTSKEKRPSVFGMTASP 470 (1931)
Q Consensus 398 ~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~-------~~~~~~~~~p~iLgLTATP 470 (1931)
.-...+-+++....|..... -.+.++++||+||+-..++ |-|...|+.. .... ...++++.|-|+.
T Consensus 118 -~~~~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~-qL~S~Tm~~~~~v~~~L~~lI--~~ak~VI~~DA~l 190 (824)
T PF02399_consen 118 -DGRPYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLN-QLFSPTMRQREEVDNLLKELI--RNAKTVIVMDADL 190 (824)
T ss_pred -cccccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHH-HHhHHHHhhHHHHHHHHHHHH--HhCCeEEEecCCC
Confidence 00134666777777764432 2366799999999987776 3454444322 1211 1248899999986
Q ss_pred C
Q 000174 471 V 471 (1931)
Q Consensus 471 ~ 471 (1931)
.
T Consensus 191 n 191 (824)
T PF02399_consen 191 N 191 (824)
T ss_pred C
Confidence 5
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.1e-06 Score=108.34 Aligned_cols=120 Identities=29% Similarity=0.285 Sum_probs=90.8
Q ss_pred CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhhhhhhccCCcC-----C------cccCCCCccchHHHHH
Q 000174 1791 NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEKETAEAKEKGDEN-----G------KKRKNGTQTFTRQTLN 1859 (1931)
Q Consensus 1791 ~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~~~~~~~-----~------~~~~~~~~~n~~~~L~ 1859 (1931)
|.|.+.|.|+|...- ||.|+.+||+.|++.+.............+. . .........||++.|+
T Consensus 24 p~~~~~~~v~~~~~~------~k~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~npv~ll~ 97 (542)
T KOG2777|consen 24 PLFPFSVEVNGQEFP------KKKAKQRAAEKALRVFLQFPEAHLSMGGTEGVNEDLTSDQADAFLSLGKEGKNPVSLLH 97 (542)
T ss_pred CcccceEEecccccc------cccccchhhhHHHHHHhhcCCcccccCCCCccccccchhhhHHHHhhhhccCCchHHHH
Confidence 478999999888743 8999999999999999765443221110000 0 0001112579999999
Q ss_pred HHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhh
Q 000174 1860 DICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928 (1931)
Q Consensus 1860 e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~ 1928 (1931)
|+++ -+.|.++.+.||.|.+.|.|.|.|++.. ++|.| .|||+||+.||..||+.|.+
T Consensus 98 e~~~-----~~~~~~~~~~~~~~~~~F~~~~~vdg~~----~~~~~---~sKk~ak~~aa~~al~~l~~ 154 (542)
T KOG2777|consen 98 ELAN-----GLFFDFVNESGPQHAPKFVMSVVVDGRW----FEGGG---RSKKEAKQEAAMAALQVLFK 154 (542)
T ss_pred HHhc-----ccceeeeccCCCCCCceEEEEEEECCEE----ccCCC---cchHHHHHHHHHHHHHHHHh
Confidence 9988 6779999999999999999999997553 33447 99999999999999999875
|
|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.2e-06 Score=110.21 Aligned_cols=141 Identities=16% Similarity=0.167 Sum_probs=85.8
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH-----HHc-----C--CcEEEEeCCC
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR-----EQT-----G--YVVGHYCGEM 386 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~-----~~~-----~--l~v~~~~G~~ 386 (1931)
|+.+.|+||+|||.+|+-.|.++.... +..++||+||+.+......+.+. .++ + +...++.+..
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~~~----~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k 136 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQKY----GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGD 136 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHc----CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCc
Confidence 678999999999999999998887653 45779999999999888776655 233 1 3344454432
Q ss_pred cccccc---hHHHHhhc-------CCccEEEEcHHHHHHHHh----------ccc-cccccee----EEEEeCCCcccCC
Q 000174 387 GQDFWD---AQRWQREF-------DTKQVLVMTAQILLNILR----------HSI-IKMEAIN----LLILDECHHAVKK 441 (1931)
Q Consensus 387 ~~~~~~---~~~w~~~~-------~~~~IlV~Tpq~L~d~L~----------~~~-l~l~~i~----lLV~DEaH~~~~~ 441 (1931)
+...-+ ....+... ...+|+|+|.|.|..... .+. .++..+. .||+||.||+...
T Consensus 137 ~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~ 216 (986)
T PRK15483 137 KKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD 216 (986)
T ss_pred ccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc
Confidence 100000 11111111 146899999999975321 111 2222222 8999999999542
Q ss_pred -CcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 442 -HPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 442 -~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
.++. .+....| --+|..|||-.
T Consensus 217 ~k~~~----~i~~lnp----l~~lrysAT~~ 239 (986)
T PRK15483 217 NKFYQ----AIEALKP----QMIIRFGATFP 239 (986)
T ss_pred hHHHH----HHHhcCc----ccEEEEeeecC
Confidence 1332 2222221 23688999954
|
|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.1e-05 Score=100.85 Aligned_cols=112 Identities=21% Similarity=0.243 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHH-HHHHHhhcCC
Q 000174 702 VTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQ-ETIAKFRDGR 780 (1931)
Q Consensus 702 ~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~-~~l~~Fr~G~ 780 (1931)
...|..++++.+.+. +..+..+||-+.++...+.|.++|.. .+++..++.. . +.+++ +++. +.|.
T Consensus 610 ~~eK~~Aii~ei~~~-~~~GrPVLVGT~SVe~SE~lS~~L~~----~gI~H~VLNA-----K--~h~~EAeIVA--~AG~ 675 (1112)
T PRK12901 610 KREKYNAVIEEITEL-SEAGRPVLVGTTSVEISELLSRMLKM----RKIPHNVLNA-----K--LHQKEAEIVA--EAGQ 675 (1112)
T ss_pred HHHHHHHHHHHHHHH-HHCCCCEEEEeCcHHHHHHHHHHHHH----cCCcHHHhhc-----c--chhhHHHHHH--hcCC
Confidence 346888888877765 45678899999999999999999998 6777666655 2 22333 2332 3444
Q ss_pred c-eEEEEecccccCCCCC--------CCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 781 V-TLLVATSVAEEGLDIR--------QCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 781 ~-~vLVaTdVaeeGlDip--------~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
. .|-|||++|+||-||. +==+||--..+.|.+-.-|-+|||||.|..
T Consensus 676 ~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDP 731 (1112)
T PRK12901 676 PGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDP 731 (1112)
T ss_pred CCcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCC
Confidence 3 4899999999999998 233788889999999999999999998865
|
|
| >cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.3e-06 Score=86.51 Aligned_cols=83 Identities=29% Similarity=0.540 Sum_probs=64.2
Q ss_pred ccccCCcEEEcccC--CCeEEEEeeccCCCCCCCCCCCCCCCCCCccccHHHHHHhhcCccccCCCCceEEeeccccccc
Q 000174 1232 AGDLEGRIVTAAHS--GKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYCKN 1309 (1931)
Q Consensus 1232 ~~~l~~~vv~~~~~--~~~y~v~~v~~dltp~s~fp~~~g~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL~~~~~~~~~n 1309 (1931)
.+.+.|..|.+.|+ ++.|.|.++.+..++.. |+...| ...|+++||+++||+.+.+++||+|.+...++
T Consensus 30 ~~~lkg~~V~~~h~~~~r~y~i~~i~~~~a~~~-f~~~~~-----~~isv~dYf~~kY~~~l~~p~~Pll~~~~~~~--- 100 (115)
T cd02825 30 TKELKGLKVEDTHNPLNRVYRPDGETRLKAPSQ-LKHSDG-----KEITFADYFKERYNLTLTDLNQPLLIVKFSSK--- 100 (115)
T ss_pred HHHcCCCEEEEecCCCceEEEEeeEECCCChhh-eecCCC-----CEEEHHHHHHHHcCCcccCCCCCEEEecCccc---
Confidence 34578999999998 57899999988555554 765544 47899999999999999999999999764221
Q ss_pred cCCCccccccccccccccccccceEEEcCCccccc
Q 000174 1310 LLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFI 1344 (1931)
Q Consensus 1310 ~l~~~~~~~~~~~~~~~~~~~k~~~~~L~Pelc~v 1344 (1931)
+...++||||+|.+
T Consensus 101 ---------------------~~~~~~lp~Elc~i 114 (115)
T cd02825 101 ---------------------KSYSILLPPELCVI 114 (115)
T ss_pred ---------------------CCCceEEchheEEe
Confidence 00136899999986
|
PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain. |
| >KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.7e-05 Score=85.79 Aligned_cols=172 Identities=21% Similarity=0.277 Sum_probs=129.7
Q ss_pred HhhhcC-CCCChhHHHHHhccccCC-------------------CCCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchh
Q 000174 1374 LKDKIN-YPVPASKILEALTAASCQ-------------------ETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQL 1433 (1931)
Q Consensus 1374 l~~~l~-~~~~~~~ll~AlT~~s~~-------------------~~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~L 1433 (1931)
+.++|+ ..|..+.++.|||.+|+. ...+|+-|--.|-.|+.+.++.||-++||..+|-.|
T Consensus 68 fg~RL~~~~is~~~l~ka~t~~s~~~~~kv~~~~lg~~~~~~~~~~~~N~~L~~~Gk~~~~~~v~~~l~~kyPrlP~E~l 147 (333)
T KOG3769|consen 68 FGKRLQSEEISLSYLLKALTNLSFSYPEKVLRQQLGAETVAQVNPQYSNEELVEIGKQFLSFYVTEYLKCKYPRLPEEGL 147 (333)
T ss_pred HHHHhccccccHHHHHHHHhCccccchHHHhhhhhcchhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 334445 456777788888887752 246899999999999999999999999999999999
Q ss_pred hHHHhhhhccHHHHHHHHHcCCccceeccccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCcc
Q 000174 1434 TRMRQQMVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDD 1513 (1931)
Q Consensus 1434 s~~R~~lVsN~~L~~~a~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1513 (1931)
+.+-+-+++.+.|+.+|..+|+..+++++.|.+. +
T Consensus 148 ~ai~n~ll~ee~LahiAt~lGie~l~~seeFp~~-----~---------------------------------------- 182 (333)
T KOG3769|consen 148 HAIVNGLLGEEVLAHIATHLGIEELGLSEEFPKV-----G---------------------------------------- 182 (333)
T ss_pred HHHHHHhhhHHHHHHHHHHhhHHHHhhcccCCCc-----h----------------------------------------
Confidence 9999999999999999999999999999987531 0
Q ss_pred ccccCcccCCCCCccccccchhhhHHHHHhhheeeccCHHHHHHHHhHhhccccCCCCcCCCCCCCCCCCccccchhhHH
Q 000174 1514 DMEDGELEGDSSSYRVLSSKTLADVVEALIGVYYVEGGKDAANHLMKWIGIQVESDPEEVGCPSRPACVPESVLRSVDFH 1593 (1931)
Q Consensus 1514 ~~~~~~~~~~~~~~~~~~~K~lADvvEALiGA~~l~~G~~~a~~~~~~l~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 1593 (1931)
....+++.++++-||+|+.+...|.....+|+..--+..++++..+.. ...| ...+.
T Consensus 183 --------------eisq~ess~~aI~Al~~~~~~ek~~~~v~dFI~~qi~~k~L~~~~m~q----l~~P-----~~~L~ 239 (333)
T KOG3769|consen 183 --------------EISQDESSRRAIGALLGSVGLEKGFNFVRDFINDQILSKDLDPREMWQ----LQWP-----RRLLS 239 (333)
T ss_pred --------------hhhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchHhhcc----ccch-----HHHHH
Confidence 011247899999999999999999888888886544444444333321 0111 12356
Q ss_pred HHHHHcCCCcCCHHHHHHHh
Q 000174 1594 ALEDALKIKFKDRGLLVEAI 1613 (1931)
Q Consensus 1594 ~le~~lgy~F~~~~LL~~Al 1613 (1931)
.+-+..|.+=--..|+.++=
T Consensus 240 ~lckr~~l~epe~Rll~esG 259 (333)
T KOG3769|consen 240 RLCKRRGLKEPESRLLAESG 259 (333)
T ss_pred HHHHHcCCCCchhHHHHHhc
Confidence 66667777766677777763
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0076 Score=75.04 Aligned_cols=96 Identities=14% Similarity=0.125 Sum_probs=78.3
Q ss_pred CCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEeccc--ccCCCC
Q 000174 719 TEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVA--EEGLDI 796 (1931)
Q Consensus 719 ~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVa--eeGlDi 796 (1931)
....++|||+++=-.--.|-.+|++ ..+..+.++- -.+..+-.++-..|.+|+.+||+-|--+ =+=..|
T Consensus 298 ~~~~~~LIfIPSYfDfVRlRN~lk~----~~~sF~~i~E-----Yts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~i 368 (442)
T PF06862_consen 298 SKMSGTLIFIPSYFDFVRLRNYLKK----ENISFVQISE-----YTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRI 368 (442)
T ss_pred cCCCcEEEEecchhhhHHHHHHHHh----cCCeEEEecc-----cCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhcee
Confidence 4567899999998888888888886 6788888888 7778888888999999999999999532 234677
Q ss_pred CCCCEEEEcCCCCCHHHHHHhhccCCC
Q 000174 797 RQCNVVIRFDLAKTVLAYIQSRGRARK 823 (1931)
Q Consensus 797 p~~~lVI~fD~p~s~~~yiQr~GRa~R 823 (1931)
.++..||.|.+|.++.=|-.-+.-...
T Consensus 369 rGi~~viFY~~P~~p~fY~El~n~~~~ 395 (442)
T PF06862_consen 369 RGIRHVIFYGPPENPQFYSELLNMLDE 395 (442)
T ss_pred cCCcEEEEECCCCChhHHHHHHhhhcc
Confidence 889999999999999988666544433
|
; GO: 0005634 nucleus |
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=97.85 E-value=6.9e-05 Score=101.51 Aligned_cols=72 Identities=21% Similarity=0.296 Sum_probs=59.8
Q ss_pred CCCCCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH
Q 000174 299 MPEEQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE 373 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~ 373 (1931)
.+|..+||.|.+.+..+.+ +++++-+|||+|||++.+.++...... .+...++++.+.|..=..|..+++++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~---~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQE---KPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHh---ccccccEEEEcccchHHHHHHHHHHh
Confidence 4566779999999988765 789999999999999999988766543 22346799999999999999999987
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=97.75 E-value=9.4e-05 Score=86.43 Aligned_cols=71 Identities=15% Similarity=0.188 Sum_probs=51.3
Q ss_pred CCcHHHHHHHHHHhc-cC-EEEEeCCCchHHHHHHHHHHHHHHH--hhhcCCCcEEEEEeCChhHHHHHHHHHHH
Q 000174 303 QARPYQLDVLEQAKK-KN-TIAFLETGAGKTLIAVLLIRSICND--LQRQNKKMLAVFLVPKVPLVYQQAEVIRE 373 (1931)
Q Consensus 303 ~~~~~Q~eai~~~l~-~n-~Il~~~TGsGKTliall~i~~~l~~--~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~ 373 (1931)
++.+.|.+|+..++. .. ++|.+|.|+|||.+....+..++.. ......+.++|+++|+..-+.+..+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 478899999999999 55 8999999999997666666655321 01134567899999999999999998887
|
|
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00029 Score=82.38 Aligned_cols=133 Identities=23% Similarity=0.193 Sum_probs=89.9
Q ss_pred hhhcCCCCCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH-
Q 000174 295 AKEKMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE- 373 (1931)
Q Consensus 295 ~l~~~~~~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~- 373 (1931)
+....-...|++.|..+.-.+ .++-|+.+.||=|||+++.+++.-... .+..|=|++..--|+..=++.+..
T Consensus 69 a~~r~~g~~p~~vQll~~l~L-~~G~laEm~TGEGKTli~~l~a~~~AL------~G~~V~vvT~NdyLA~RD~~~~~~~ 141 (266)
T PF07517_consen 69 AARRTLGLRPYDVQLLGALAL-HKGRLAEMKTGEGKTLIAALPAALNAL------QGKGVHVVTSNDYLAKRDAEEMRPF 141 (266)
T ss_dssp HHHHHTS----HHHHHHHHHH-HTTSEEEESTTSHHHHHHHHHHHHHHT------TSS-EEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcccHHHHhhhhhc-ccceeEEecCCCCcHHHHHHHHHHHHH------hcCCcEEEeccHHHhhccHHHHHHH
Confidence 344445678999998888555 445599999999999999997754433 256699999999999887766665
Q ss_pred --HcCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHH-HHHhccc------ccccceeEEEEeCCCcccC
Q 000174 374 --QTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILL-NILRHSI------IKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 374 --~~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~-d~L~~~~------l~l~~i~lLV~DEaH~~~~ 440 (1931)
++|+.|+.+++++.... ++..-.++|+.+|...|. |.|+... .....+.++|+||||.++-
T Consensus 142 y~~LGlsv~~~~~~~~~~~------r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~Li 211 (266)
T PF07517_consen 142 YEFLGLSVGIITSDMSSEE------RREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSILI 211 (266)
T ss_dssp HHHTT--EEEEETTTEHHH------HHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHTT
T ss_pred HHHhhhccccCccccCHHH------HHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEEE
Confidence 56999999999876321 122235789999997765 3444321 1246788999999998873
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00037 Score=81.42 Aligned_cols=154 Identities=18% Similarity=0.137 Sum_probs=94.9
Q ss_pred CCCcHHHHHHHHHHhc-----------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHH
Q 000174 302 EQARPYQLDVLEQAKK-----------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEV 370 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-----------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~ 370 (1931)
..+..-|.|++--+.+ ...++.+.||.||..+....|.+...+ .++++|+|..+-.|.....+-
T Consensus 36 g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~-----Gr~r~vwvS~s~dL~~Da~RD 110 (303)
T PF13872_consen 36 GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR-----GRKRAVWVSVSNDLKYDAERD 110 (303)
T ss_pred ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc-----CCCceEEEECChhhhhHHHHH
Confidence 4578999998877642 457999999999986666655544332 345688899999998877777
Q ss_pred HHHHcC--CcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcc---cccc--------cce-eEEEEeCCC
Q 000174 371 IREQTG--YVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS---IIKM--------EAI-NLLILDECH 436 (1931)
Q Consensus 371 l~~~~~--l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~---~l~l--------~~i-~lLV~DEaH 436 (1931)
++..-. +.+..+.. ++... ..-....||++||..|...-..+ .-.+ .++ .+|||||||
T Consensus 111 l~DIG~~~i~v~~l~~------~~~~~--~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH 182 (303)
T PF13872_consen 111 LRDIGADNIPVHPLNK------FKYGD--IIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECH 182 (303)
T ss_pred HHHhCCCcccceechh------hccCc--CCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccch
Confidence 776432 22222211 11000 00124569999999998765321 1111 122 399999999
Q ss_pred cccCCCc-------HHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 437 HAVKKHP-------YSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 437 ~~~~~~~-------~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
++.+-.. -......+-...| ..|++-+|||..
T Consensus 183 ~akn~~~~~~~~sk~g~avl~LQ~~LP---~ARvvY~SATga 221 (303)
T PF13872_consen 183 KAKNLSSGSKKPSKTGIAVLELQNRLP---NARVVYASATGA 221 (303)
T ss_pred hcCCCCccCccccHHHHHHHHHHHhCC---CCcEEEeccccc
Confidence 9997422 1112222333332 367999999965
|
|
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.64 E-value=5.4e-05 Score=100.03 Aligned_cols=144 Identities=22% Similarity=0.200 Sum_probs=100.6
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhh--------h----cCCCcEEEEEeCChhHHHHHHHHHHHHc--CCcEEEEe
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQ--------R----QNKKMLAVFLVPKVPLVYQQAEVIREQT--GYVVGHYC 383 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~--------~----~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~--~l~v~~~~ 383 (1931)
.+++++.++|+|||..-+........... . ....+.+|||+|. ++..||..+|..+. +++|..|.
T Consensus 375 ~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~lKv~~Y~ 453 (1394)
T KOG0298|consen 375 KRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSLLKVLLYF 453 (1394)
T ss_pred cceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccccceEEEEe
Confidence 45799999999999887775543321110 0 1123458999996 67799999999987 45777777
Q ss_pred CCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhccc--------------------ccccceeEEEEeCCCcccCCCc
Q 000174 384 GEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSI--------------------IKMEAINLLILDECHHAVKKHP 443 (1931)
Q Consensus 384 G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~--------------------l~l~~i~lLV~DEaH~~~~~~~ 443 (1931)
|-.. ..|... ..+..++||++||.+|.+.+.|.. +.+-.|=-|++|||+.+-...+
T Consensus 454 Girk-~~~~~~---~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesssS 529 (1394)
T KOG0298|consen 454 GIRK-TFWLSP---FELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSSS 529 (1394)
T ss_pred chhh-hcccCc---hhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchHH
Confidence 7543 333333 455799999999999999886641 1122344699999998877666
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEeecCCC
Q 000174 444 YSLVMSEFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 444 ~~~im~~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
+...|-..+++ -...+.|+||++
T Consensus 530 ~~a~M~~rL~~------in~W~VTGTPiq 552 (1394)
T KOG0298|consen 530 AAAEMVRRLHA------INRWCVTGTPIQ 552 (1394)
T ss_pred HHHHHHHHhhh------hceeeecCCchh
Confidence 66666555443 468999999996
|
|
| >PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1 | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00021 Score=67.71 Aligned_cols=64 Identities=33% Similarity=0.382 Sum_probs=49.9
Q ss_pred CCChHHHHHHHHhhcCC-ceeEEe-ccCC----eEEEEEEECCEEEE---------Eee-cCCHHHHHHHHHHHHHHHHH
Q 000174 1765 MHPVRELQERCQQQAEG-LEYKAS-RSGN----LATVEVYIDGVQVG---------VAQ-NPQKKMAQKLAARNALAVLK 1828 (1931)
Q Consensus 1765 ~~P~~~L~e~~~~~~~~-~~y~~~-~~g~----~f~v~V~v~g~~~~---------~g~-g~skk~Ak~~AA~~AL~~L~ 1828 (1931)
+||++.|+|+|++++++ +.|++. ..|+ .|++.|.|.+.... -+. ..++++||..||+.||..|.
T Consensus 1 k~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg 80 (80)
T PF14709_consen 1 KSAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG 80 (80)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence 58999999999999987 499975 3454 69999999876541 112 34578899999999999873
|
|
| >KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00041 Score=85.82 Aligned_cols=138 Identities=15% Similarity=0.134 Sum_probs=101.0
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH
Q 000174 294 EAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR 372 (1931)
Q Consensus 294 ~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~ 372 (1931)
..+...+..+|..-|..|+..++. .=.||++|.|+|||.+...++.+++++ ...+||+.+|+..-+.|.++.|.
T Consensus 401 ~~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~-----~~~~VLvcApSNiAVDqLaeKIh 475 (935)
T KOG1802|consen 401 RRFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-----HAGPVLVCAPSNIAVDQLAEKIH 475 (935)
T ss_pred hhhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh-----cCCceEEEcccchhHHHHHHHHH
Confidence 456667788999999999999999 557999999999999999888888775 35679999999999999999998
Q ss_pred HHcCCcEEEEeCCCcc---------------------------------------cc-----cchHHHHhhcCCccEEEE
Q 000174 373 EQTGYVVGHYCGEMGQ---------------------------------------DF-----WDAQRWQREFDTKQVLVM 408 (1931)
Q Consensus 373 ~~~~l~v~~~~G~~~~---------------------------------------~~-----~~~~~w~~~~~~~~IlV~ 408 (1931)
+ +|++|.-++..... +. .+...-..++...+|+.|
T Consensus 476 ~-tgLKVvRl~aksRE~~~S~vs~L~lh~~~~~~~~pELq~l~klkde~gelS~sD~~k~~~lk~~~e~ell~~AdVIcc 554 (935)
T KOG1802|consen 476 K-TGLKVVRLCAKSREDIESDVSFLSLHEQLRNMDKPELQKLLKLKDEGGELSSSDEKKYRKLKRAAEKELLNQADVICC 554 (935)
T ss_pred h-cCceEeeeehhhhhhccCCccHHHHHHHHhccCcHHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHHHhhcCEEEE
Confidence 7 56776655332110 00 001112334457889998
Q ss_pred cHHHHHHHHhcccccccceeEEEEeCCCcccCC
Q 000174 409 TAQILLNILRHSIIKMEAINLLILDECHHAVKK 441 (1931)
Q Consensus 409 Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~ 441 (1931)
|--..-+. .+.-..+..|++||+-.....
T Consensus 555 Tcv~Agd~----rl~~~kfr~VLiDEaTQatEp 583 (935)
T KOG1802|consen 555 TCVGAGDR----RLSKFKFRTVLIDEATQATEP 583 (935)
T ss_pred ecccccch----hhccccccEEEEecccccCCc
Confidence 87544321 133356789999999998875
|
|
| >cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00045 Score=71.00 Aligned_cols=65 Identities=26% Similarity=0.517 Sum_probs=53.5
Q ss_pred ccCCcEEEcccC---CCeEEEEeeccCCCCCCCCCCCCCCCCCCccccHHHHHHhhcCccccCCCCceEEee
Q 000174 1234 DLEGRIVTAAHS---GKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGR 1302 (1931)
Q Consensus 1234 ~l~~~vv~~~~~---~~~y~v~~v~~dltp~s~fp~~~g~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL~~~ 1302 (1931)
.+.|..|.+.|. ++.|.|.++..+..+...|+...+. .+.|+.+||+++|++.+.++++|++.+.
T Consensus 31 ~lkgl~v~~~~~~~~~r~~~i~~l~~~~~~~~~F~~~~~~----~~isV~dYf~~~y~~~l~~p~lP~v~~g 98 (114)
T cd02846 31 ALKGLKVEVTHRGNTNRKYKIKGLSAEPASQQTFELKDGE----KEISVADYFKEKYNIRLKYPNLPCLQVG 98 (114)
T ss_pred HhCCCEEEEEcCCCCCceEEEeeccCCCccceEEEcCCCC----cEEEHHHHHHHHcCCcccCCCCCEEEeC
Confidence 456888888886 6889999998887777888755431 3789999999999999999999999964
|
Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. |
| >KOG2340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.081 Score=64.97 Aligned_cols=124 Identities=10% Similarity=0.160 Sum_probs=84.0
Q ss_pred HHHHHHHH-HHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCce
Q 000174 704 PKVQSLIK-ILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVT 782 (1931)
Q Consensus 704 ~Kv~~Li~-lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~ 782 (1931)
.++.-.++ ++-.+.......++|++++=-.--.+-..+++ ..+....|+- -.++.+-.++-+-|-.|..+
T Consensus 534 ~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~----e~i~F~~i~E-----Yssk~~vsRAR~lF~qgr~~ 604 (698)
T KOG2340|consen 534 ARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKK----EEISFVMINE-----YSSKSKVSRARELFFQGRKS 604 (698)
T ss_pred HHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhh----hhcchHHHhh-----hhhHhhhhHHHHHHHhcCce
Confidence 34444433 22233333346689999987777777777776 4555555555 34445555566778999999
Q ss_pred EEEEeccc--ccCCCCCCCCEEEEcCCCCCHHHH---HHhhccCCCCC------CcEEEEEecCC
Q 000174 783 LLVATSVA--EEGLDIRQCNVVIRFDLAKTVLAY---IQSRGRARKPG------SDYILMIERGN 836 (1931)
Q Consensus 783 vLVaTdVa--eeGlDip~~~lVI~fD~p~s~~~y---iQr~GRa~R~G------s~~ivlv~~~~ 836 (1931)
+|+-|--+ =+--+|.+|..||.|.+|.+|.=| +-..+|+.-.| ..+.+|....+
T Consensus 605 vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD 669 (698)
T KOG2340|consen 605 VLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYD 669 (698)
T ss_pred EEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechh
Confidence 99999643 356789999999999999999877 56667776555 44666666554
|
|
| >KOG1803 consensus DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00083 Score=83.54 Aligned_cols=137 Identities=18% Similarity=0.186 Sum_probs=92.0
Q ss_pred CCCcHHHHHHHHHHhc-cC-EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHH-----
Q 000174 302 EQARPYQLDVLEQAKK-KN-TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQ----- 374 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-~n-~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~----- 374 (1931)
..+.+-|++|+..++. ++ .++.+|+|+|||.+-..+|.+++.+ +.+|||.+||.+-+..+.+.+...
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~------~k~VLVcaPSn~AVdNiverl~~~~~~l~ 257 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ------KKRVLVCAPSNVAVDNIVERLTHLKLNLV 257 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc------CCeEEEEcCchHHHHHHHHHhcccccchh
Confidence 5678899999999988 44 6899999999999999998888774 578999999999988888864310
Q ss_pred -cCCc-------------EEEEeCC--------------------Cccc------cc------chHHH-------HhhcC
Q 000174 375 -TGYV-------------VGHYCGE--------------------MGQD------FW------DAQRW-------QREFD 401 (1931)
Q Consensus 375 -~~l~-------------v~~~~G~--------------------~~~~------~~------~~~~w-------~~~~~ 401 (1931)
.|.+ ...-.++ ...+ .| +++.. ...+.
T Consensus 258 R~g~paRl~~~~~~~sld~~~~t~d~~~~~~~~sk~~d~~~~~~~~tk~~~~~~~~~~~i~~lrkdl~kre~~~v~eii~ 337 (649)
T KOG1803|consen 258 RVGHPARLLESVADHSLDLLSNTKDNSQNAKDISKDIDILFQKNTKTKNDKLRKGIRKEIKLLRKDLRKRERKTVKEIIS 337 (649)
T ss_pred hcCchhhhhhhhhhhHHHHHHhcCchhhhhhhhHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 0100 0001110 0000 00 00111 12344
Q ss_pred CccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHH
Q 000174 402 TKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVM 448 (1931)
Q Consensus 402 ~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im 448 (1931)
+.+|+++|-+.-.+.+. .-..++++|+|||=.++....|-.++
T Consensus 338 n~~VVfaTl~ga~~~~~----~~~~fD~vIIDEaaQamE~~cWipvl 380 (649)
T KOG1803|consen 338 NSRVVFATLGGALDRLL----RKRTFDLVIIDEAAQAMEPQCWIPVL 380 (649)
T ss_pred ccceEEEeccchhhhhh----cccCCCEEEEehhhhhccchhhhHHh
Confidence 78999999887766332 23679999999999998865555554
|
|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0011 Score=82.35 Aligned_cols=95 Identities=18% Similarity=0.216 Sum_probs=66.9
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHh
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQR 398 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~ 398 (1931)
-+||.+..|||||++++.++..+.. ...+..++++++..+|+......+.... ..
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~----~~~~~~~~~l~~n~~l~~~l~~~l~~~~-------~~-------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQN----SEEGKKVLYLCGNHPLRNKLREQLAKKY-------NP-------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhc----cccCCceEEEEecchHHHHHHHHHhhhc-------cc--------------
Confidence 3689999999999999998887621 1245679999999999887777776532 00
Q ss_pred hcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 399 EFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 399 ~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
......+..+..+.+.+.........+++|||||||++..
T Consensus 58 --~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 58 --KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred --chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 1112334455555544432234567899999999999987
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.021 Score=75.39 Aligned_cols=113 Identities=19% Similarity=0.226 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCc
Q 000174 702 VTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRV 781 (1931)
Q Consensus 702 ~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~ 781 (1931)
...|....++.+... +..+..+||-+.+....+.+.++|.+ .+++-..+.. ....|+.-+-.+ .|..
T Consensus 411 ~~~K~~Aiv~~I~~~-~~~gqPvLvgT~sie~SE~ls~~L~~----~~i~h~VLNA-------k~h~~EA~Iia~-AG~~ 477 (822)
T COG0653 411 EEEKFKAIVEDIKER-HEKGQPVLVGTVSIEKSELLSKLLRK----AGIPHNVLNA-------KNHAREAEIIAQ-AGQP 477 (822)
T ss_pred hHHHHHHHHHHHHHH-HhcCCCEEEcCcceecchhHHHHHHh----cCCCceeecc-------ccHHHHHHHHhh-cCCC
Confidence 346788888777765 56678899999999999999999997 5777767755 222444333333 4444
Q ss_pred e-EEEEecccccCCCCCCCC-----------EEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 782 T-LLVATSVAEEGLDIRQCN-----------VVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 782 ~-vLVaTdVaeeGlDip~~~-----------lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
. |=|||++|+||-||.--. +||--....|-.-.-|-+||+||.|-.
T Consensus 478 gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDp 535 (822)
T COG0653 478 GAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDP 535 (822)
T ss_pred CccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCc
Confidence 3 789999999999997533 345444445555556999999998854
|
|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0029 Score=84.13 Aligned_cols=66 Identities=20% Similarity=0.135 Sum_probs=56.4
Q ss_pred CCCcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH
Q 000174 302 EQARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE 373 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~ 373 (1931)
..+.+.|.+++..++. ..++|.+|+|+|||.+....+.+++.. +.+||+++||..-|.+..+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~------g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR------GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc------CCCEEEEcCcHHHHHHHHHHHHh
Confidence 4689999999999987 568999999999998888887776652 34799999999999998888876
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00018 Score=93.55 Aligned_cols=126 Identities=21% Similarity=0.295 Sum_probs=94.9
Q ss_pred cHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc---CCcE
Q 000174 305 RPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT---GYVV 379 (1931)
Q Consensus 305 ~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~---~l~v 379 (1931)
.|.|...+..... .+.++.+|||+|||++|-+.+...+.. .++.++++++|-.+|+.--.+...+.. |+++
T Consensus 929 n~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~----~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ 1004 (1230)
T KOG0952|consen 929 NPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSY----YPGSKVVYIAPDKALVKERSDDWSKRDELPGIKV 1004 (1230)
T ss_pred CCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhcc----CCCccEEEEcCCchhhcccccchhhhcccCCcee
Confidence 3455555555444 678999999999999999988766653 456789999999999876555544432 7889
Q ss_pred EEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhc--ccccccceeEEEEeCCCcccCC
Q 000174 380 GHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH--SIIKMEAINLLILDECHHAVKK 441 (1931)
Q Consensus 380 ~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~--~~l~l~~i~lLV~DEaH~~~~~ 441 (1931)
+.+.|+...+. ......+|+|+||+......+. ..-.+.+++++|+||.|.+..+
T Consensus 1005 ie~tgd~~pd~-------~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1005 IELTGDVTPDV-------KAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred EeccCccCCCh-------hheecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 99998876542 2336889999999999876652 3345788999999999998763
|
|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0025 Score=71.73 Aligned_cols=58 Identities=17% Similarity=0.145 Sum_probs=42.2
Q ss_pred CCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhH
Q 000174 302 EQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPL 363 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~L 363 (1931)
...++.|..++..+++ .-+++.++.|||||+.++..+.+.+.. +.-.+++++-|+++.
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~----g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE----GEYDKIIITRPPVEA 61 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT----TS-SEEEEEE-S--T
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh----CCCcEEEEEecCCCC
Confidence 4568899999999998 678999999999999999988877763 455778999898754
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0042 Score=70.41 Aligned_cols=135 Identities=19% Similarity=0.246 Sum_probs=86.5
Q ss_pred CCCCCcHHHHHHHHHHhc----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000174 300 PEEQARPYQLDVLEQAKK----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT 375 (1931)
Q Consensus 300 ~~~~~~~~Q~eai~~~l~----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~ 375 (1931)
...-+|+.|.++...+.+ .|.+..+-||.|||-+.+=.+...+. ++...|.++|| .+|..|..+.++..+
T Consensus 20 ~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LA-----dg~~LvrviVp-k~Ll~q~~~~L~~~l 93 (229)
T PF12340_consen 20 SNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALA-----DGSRLVRVIVP-KALLEQMRQMLRSRL 93 (229)
T ss_pred cCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHc-----CCCcEEEEEcC-HHHHHHHHHHHHHHH
Confidence 346789999999999887 68999999999999765443333332 34466778888 589999999998865
Q ss_pred C----CcEEEE--eCCCcccccchHHHH----hhcCCccEEEEcHHHHHHHHhc-------ccc-----------cccce
Q 000174 376 G----YVVGHY--CGEMGQDFWDAQRWQ----REFDTKQVLVMTAQILLNILRH-------SII-----------KMEAI 427 (1931)
Q Consensus 376 ~----l~v~~~--~G~~~~~~~~~~~w~----~~~~~~~IlV~Tpq~L~d~L~~-------~~l-----------~l~~i 427 (1931)
+ -++..+ .-....+........ .......|+++||+.++...-. +.. .+..-
T Consensus 94 g~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~ 173 (229)
T PF12340_consen 94 GGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEH 173 (229)
T ss_pred HHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Confidence 3 333332 333333222222222 2334677999999987754211 110 13334
Q ss_pred eEEEEeCCCcccC
Q 000174 428 NLLILDECHHAVK 440 (1931)
Q Consensus 428 ~lLV~DEaH~~~~ 440 (1931)
.-=|+||+|..+.
T Consensus 174 ~rdilDEsDe~L~ 186 (229)
T PF12340_consen 174 SRDILDESDEILS 186 (229)
T ss_pred CCeEeECchhccC
Confidence 4568999988765
|
There are two conserved sequence motifs: LLE and NMG. |
| >COG1939 Ribonuclease III family protein [Replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0059 Score=61.08 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHHHHHHHH
Q 000174 1628 RLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAV 1675 (1931)
Q Consensus 1628 RLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~La~~a~ 1675 (1931)
-|.|+||||+++.|-.|+...+.. .|..||..-.+.||...-|.+-.
T Consensus 17 aLAy~GDAV~e~yVR~~~l~~g~~-k~~~lH~~a~~~VsAk~QA~il~ 63 (132)
T COG1939 17 ALAYLGDAVYELYVREYLLLKGKT-KPNDLHKRATAYVSAKAQALILK 63 (132)
T ss_pred HHHHhhhHHHHHHHHHHHHhcccC-ChHHHHHHHHHHhhHHHHHHHHH
Confidence 689999999999999999876443 79999999999999988776543
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0018 Score=73.33 Aligned_cols=68 Identities=18% Similarity=0.139 Sum_probs=44.1
Q ss_pred CCcHHHHHHHHHHhc-c-C-EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcE
Q 000174 303 QARPYQLDVLEQAKK-K-N-TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVV 379 (1931)
Q Consensus 303 ~~~~~Q~eai~~~l~-~-n-~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v 379 (1931)
+|++-|.+++..++. . + ++|.++.|+|||.+...+ ...+.. .+.++++++||...+. ++.+.++..+
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~-~~~~~~-----~g~~v~~~apT~~Aa~----~L~~~~~~~a 70 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKAL-AEALEA-----AGKRVIGLAPTNKAAK----ELREKTGIEA 70 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHH-HHHHHH-----TT--EEEEESSHHHHH----HHHHHHTS-E
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHH-HHHHHh-----CCCeEEEECCcHHHHH----HHHHhhCcch
Confidence 478899999999976 2 3 678899999999865443 333332 2477999999965544 4555444443
Q ss_pred E
Q 000174 380 G 380 (1931)
Q Consensus 380 ~ 380 (1931)
.
T Consensus 71 ~ 71 (196)
T PF13604_consen 71 Q 71 (196)
T ss_dssp E
T ss_pred h
Confidence 3
|
|
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0024 Score=70.47 Aligned_cols=80 Identities=16% Similarity=0.173 Sum_probs=57.4
Q ss_pred CceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEec--ccccCCCCCC
Q 000174 721 DFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATS--VAEEGLDIRQ 798 (1931)
Q Consensus 721 ~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTd--VaeeGlDip~ 798 (1931)
..+++||+++....+.+.+.+.......++ ..+.- ....+.+++++|+.++-.||+|+. ...||||+|+
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~--~v~~q-------~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGI--PVFVQ-------GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETS--CEEES-------TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--EC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccc--eeeec-------CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCC
Confidence 578999999999999999988763210122 22221 234677899999999999999998 9999999997
Q ss_pred --CCEEEEcCCCC
Q 000174 799 --CNVVIRFDLAK 809 (1931)
Q Consensus 799 --~~lVI~fD~p~ 809 (1931)
|..||...+|.
T Consensus 80 ~~~r~vii~glPf 92 (167)
T PF13307_consen 80 DLLRAVIIVGLPF 92 (167)
T ss_dssp ESEEEEEEES---
T ss_pred chhheeeecCCCC
Confidence 88999988885
|
|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.015 Score=74.87 Aligned_cols=107 Identities=16% Similarity=0.234 Sum_probs=75.8
Q ss_pred CceEEEEEeehhHHHHHHHHHhcCCCC---CCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCC
Q 000174 721 DFRAIIFVERVVAALVLPKVFAELPSL---SFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIR 797 (1931)
Q Consensus 721 ~~k~IIFv~~r~ta~~L~~~L~~~~~l---~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip 797 (1931)
..-++||-.-......|..+|..+..+ ..+...-.|. .....++.++.+....|..++++.|.+++.-|-+-
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hs-----q~~~~eqrkvf~~~p~gv~kii~stniaetsiTid 717 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHS-----QLTSQEQRKVFEPVPEGVTKIILSTNIAETSITID 717 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchh-----hcccHhhhhccCcccccccccccccceeeEeeeec
Confidence 345788888888888888777654322 2344555566 55556667777777789999999999999999998
Q ss_pred CCCEEEEcCCC------------------CCHHHHHHhhccCCCCCCcEEEEE
Q 000174 798 QCNVVIRFDLA------------------KTVLAYIQSRGRARKPGSDYILMI 832 (1931)
Q Consensus 798 ~~~lVI~fD~p------------------~s~~~yiQr~GRa~R~Gs~~ivlv 832 (1931)
++..||.-+.- .+....+||.||++|....+...+
T Consensus 718 d~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~l 770 (1282)
T KOG0921|consen 718 DVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHL 770 (1282)
T ss_pred ceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccc
Confidence 87777643321 245567999999998766554443
|
|
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0063 Score=78.36 Aligned_cols=48 Identities=15% Similarity=0.294 Sum_probs=43.4
Q ss_pred HhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCC
Q 000174 775 KFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARK 823 (1931)
Q Consensus 775 ~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R 823 (1931)
.|.+ ..+++++-.++-||.|=|+|=.++-.....|..+=.|-+||.-|
T Consensus 479 SFd~-plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLR 526 (985)
T COG3587 479 SFDE-PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLR 526 (985)
T ss_pred ccCC-cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhcccee
Confidence 4544 47899999999999999999999999999999999999999877
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0047 Score=65.04 Aligned_cols=118 Identities=18% Similarity=0.210 Sum_probs=59.9
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQ 397 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~ 397 (1931)
+-++|.+++|+|||...-..+..+............+.+-+|...-...+...+...++.....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~---------------- 68 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS---------------- 68 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS----------------
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc----------------
Confidence 4578999999999998888777665432222222334444444332344445554444322110
Q ss_pred hhcCCccEEEEcHH----HHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 398 REFDTKQVLVMTAQ----ILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 398 ~~~~~~~IlV~Tpq----~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
-.+.. .+.+.+.+. ...+|||||+|++. + ...+..+..... ...-.+.+++||.
T Consensus 69 ---------~~~~~~l~~~~~~~l~~~-----~~~~lviDe~~~l~-~---~~~l~~l~~l~~--~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 69 ---------RQTSDELRSLLIDALDRR-----RVVLLVIDEADHLF-S---DEFLEFLRSLLN--ESNIKVVLVGTPE 126 (131)
T ss_dssp ---------TS-HHHHHHHHHHHHHHC-----TEEEEEEETTHHHH-T---HHHHHHHHHHTC--SCBEEEEEEESST
T ss_pred ---------cCCHHHHHHHHHHHHHhc-----CCeEEEEeChHhcC-C---HHHHHHHHHHHh--CCCCeEEEEEChh
Confidence 01222 233333332 22799999999984 2 233333322211 2344578888884
|
|
| >KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.013 Score=76.03 Aligned_cols=38 Identities=26% Similarity=0.267 Sum_probs=31.9
Q ss_pred CCCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHH
Q 000174 301 EEQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLI 338 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i 338 (1931)
..+|++.|...+..++. .|+++-.|||+|||+.-+-..
T Consensus 19 P~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~ 61 (945)
T KOG1132|consen 19 PFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCST 61 (945)
T ss_pred cCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHH
Confidence 36789999999998875 789999999999998766533
|
|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0077 Score=56.74 Aligned_cols=59 Identities=15% Similarity=0.109 Sum_probs=43.2
Q ss_pred HHHHHhc-cC-EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHH
Q 000174 311 VLEQAKK-KN-TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVI 371 (1931)
Q Consensus 311 ai~~~l~-~n-~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l 371 (1931)
++..++. .+ ++|.++.|||||...+-.+.+++.... .+ +.+++|++||+..+.+..+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~-~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARA-DP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhc-CC-CCeEEEECCCHHHHHHHHHHH
Confidence 4443444 44 556999999999888888877764221 22 678999999999988777776
|
|
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0027 Score=78.25 Aligned_cols=112 Identities=17% Similarity=0.216 Sum_probs=66.8
Q ss_pred EeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHH----cCCcEEEEeCCCcccccchHHHHh
Q 000174 323 FLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQ----TGYVVGHYCGEMGQDFWDAQRWQR 398 (1931)
Q Consensus 323 ~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~----~~l~v~~~~G~~~~~~~~~~~w~~ 398 (1931)
.|.||||||++...+|++.... +-+..||.|.....+.-...-+..- .=+.-.+..++......+...+..
T Consensus 3 ~matgsgkt~~ma~lil~~y~k-----gyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fse 77 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKK-----GYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSE 77 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHh-----chhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCc
Confidence 5789999999999999988774 2345778887655544333222110 001112223333322222222222
Q ss_pred hcCCccEEEEcHHHHHHHHhcc---cccc---ccee-EEEEeCCCccc
Q 000174 399 EFDTKQVLVMTAQILLNILRHS---IIKM---EAIN-LLILDECHHAV 439 (1931)
Q Consensus 399 ~~~~~~IlV~Tpq~L~d~L~~~---~l~l---~~i~-lLV~DEaH~~~ 439 (1931)
.-....|+++|.|.|...+.+. .+.+ .+.. +.+-|||||+-
T Consensus 78 hnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln 125 (812)
T COG3421 78 HNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLN 125 (812)
T ss_pred cCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhh
Confidence 3357889999999999887653 3333 3444 45669999986
|
|
| >PLN03202 protein argonaute; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0031 Score=86.85 Aligned_cols=90 Identities=20% Similarity=0.287 Sum_probs=68.8
Q ss_pred ccccCCcEEEcccCCCeEEEEeeccCCCCCCCCCCCCCC----CCCCccccHHHHHHhhcCccccCC-CCceEEeecccc
Q 000174 1232 AGDLEGRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGY----LGPLEYSSYADYYKQKYGVELIFK-KQPLIRGRGVSY 1306 (1931)
Q Consensus 1232 ~~~l~~~vv~~~~~~~~y~v~~v~~dltp~s~fp~~~g~----~~~~~~~t~~~yy~~k~~~~l~~~-~QPLL~~~~~~~ 1306 (1931)
.+.|.|..|.+.|+++.|.|.++.++.+|...|....+- .+...+.|+.+||+++|++.+.++ ++|++.+.+
T Consensus 292 ~~~lkGl~V~t~~~~k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~~~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~--- 368 (900)
T PLN03202 292 KRMLKNLRVKVSPSNQEYKITGLSEKPCKEQTFSLKQRNGNGNEVETVEITVYDYFVKHRGIELRYSGDLPCINVGK--- 368 (900)
T ss_pred HHHhcCCEEEEecCCceEEEeeccCCCCcceEEEcccCCcccccCCcceEEHHHHHHHHcCccccCCCCCCEEEcCC---
Confidence 356889999999999999999999999999888643110 011136899999999999999985 899887321
Q ss_pred ccccCCCccccccccccccccccccceEEEcCCcccccccCC
Q 000174 1307 CKNLLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHPLP 1348 (1931)
Q Consensus 1307 ~~n~l~~~~~~~~~~~~~~~~~~~k~~~~~L~Pelc~v~~lp 1348 (1931)
..+ .++||||+|.+.+.-
T Consensus 369 ----------------------~~~--~~ylP~ElC~i~~~Q 386 (900)
T PLN03202 369 ----------------------PKR--PTYFPIELCSLVSLQ 386 (900)
T ss_pred ----------------------CCC--CeEEcceeeEccCCc
Confidence 011 268999999998864
|
|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.043 Score=63.58 Aligned_cols=60 Identities=18% Similarity=0.104 Sum_probs=45.2
Q ss_pred CCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChh
Q 000174 299 MPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVP 362 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~ 362 (1931)
.++...+..|..++..+.+ ..+++.+++|+|||+.++....+.+.. +.-.++++.=|+++
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~----~~~~kIiI~RP~v~ 115 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH----KDVDRIIVTRPVLQ 115 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc----CCeeEEEEeCCCCC
Confidence 4566778899999998877 778899999999999999987765532 23345666666654
|
|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.074 Score=72.08 Aligned_cols=70 Identities=21% Similarity=0.165 Sum_probs=49.6
Q ss_pred CCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCC
Q 000174 300 PEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY 377 (1931)
Q Consensus 300 ~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l 377 (1931)
....+++-|++|+..+.. +-++|.+..|+|||.+.-.++.. +.. .++...+++++||-.-+. .+.+.+|.
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~-~~~---~~~~~~v~l~ApTg~AA~----~L~e~~g~ 390 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIEL-AEE---LGGLLPVGLAAPTGRAAK----RLGEVTGL 390 (720)
T ss_pred cCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHH-HHH---cCCCceEEEEeCchHHHH----HHHHhcCC
Confidence 346799999999999987 77899999999999876554432 332 122257899999976554 44444443
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.024 Score=55.33 Aligned_cols=68 Identities=26% Similarity=0.229 Sum_probs=43.2
Q ss_pred HHHHHHHHHHcCC-----CCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1855 RQTLNDICLRRNW-----PMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1855 ~~~L~e~~~~~~~-----~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
++.|+.||++..- ..|.|.+....+ .|.++|++-.. .. ...-.|.++.|||.||+.||-.|..+|.+.
T Consensus 2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~-----~~~c~v~LP~~-~p-i~~i~g~~~~sk~~AK~sAAf~Ac~~L~~~ 74 (90)
T PF03368_consen 2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS-----GFICTVILPIN-SP-IRSIEGPPMRSKKLAKRSAAFEACKKLHEA 74 (90)
T ss_dssp HHHHHHHHTTSSS-TT--SS-EEEEEE--G------EEEEEE--TT--S-S--EEEE--SSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCccCCceEEEEEcCC-----cEEEEEECCCC-CC-CCeEEccccccHHHHHHHHHHHHHHHHHHc
Confidence 6889999987543 457787655443 67777776532 12 223566789999999999999999998763
|
This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A. |
| >KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.045 Score=66.78 Aligned_cols=71 Identities=18% Similarity=0.287 Sum_probs=43.5
Q ss_pred CCCCCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHH
Q 000174 299 MPEEQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVI 371 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l 371 (1931)
.++...+|-|.+=.-.+++ .++++-+|+|+|||..-+.++.......+ ....+.++-.-|++=++....++
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p--~~~~KliYCSRTvpEieK~l~El 87 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYP--DEHRKLIYCSRTVPEIEKALEEL 87 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCC--cccceEEEecCcchHHHHHHHHH
Confidence 4566778888776555543 78999999999999988877654433221 12234455444544444333333
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.039 Score=65.01 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=22.7
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
.|+++++|+|+|||..+..+..+.+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~ 124 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQ 124 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHH
Confidence 89999999999999999888766654
|
|
| >PF13871 Helicase_C_4: Helicase_C-like | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.064 Score=63.03 Aligned_cols=72 Identities=18% Similarity=0.302 Sum_probs=56.8
Q ss_pred HHHHHhhcCCceEEEEecccccCCCCCCC--------CEEEEcCCCCCHHHHHHhhccCCCCCCc----EEEEEecCChh
Q 000174 771 ETIAKFRDGRVTLLVATSVAEEGLDIRQC--------NVVIRFDLAKTVLAYIQSRGRARKPGSD----YILMIERGNLS 838 (1931)
Q Consensus 771 ~~l~~Fr~G~~~vLVaTdVaeeGlDip~~--------~lVI~fD~p~s~~~yiQr~GRa~R~Gs~----~ivlv~~~~~~ 838 (1931)
...+.|.+|+..|+|-|++++.||-+.+- .+-|...+||+....+|-.||++|.||. |++++. +-..
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t-~~~g 130 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVT-DLPG 130 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeec-CCHH
Confidence 45678999999999999999999999852 2347889999999999999999999986 655543 3333
Q ss_pred HHHHH
Q 000174 839 HATFL 843 (1931)
Q Consensus 839 ~~~~l 843 (1931)
+..+.
T Consensus 131 E~Rfa 135 (278)
T PF13871_consen 131 ERRFA 135 (278)
T ss_pred HHHHH
Confidence 33343
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.16 Score=63.22 Aligned_cols=122 Identities=14% Similarity=0.122 Sum_probs=67.0
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEE-eCC-hhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFL-VPK-VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQR 395 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~L-vPT-~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~ 395 (1931)
+.++++++||+|||-+..-++.++.... ...+.+|.++ +.| +.-+..|...+.+.+++++..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~--~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~-------------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINS--DDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKA-------------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhh--ccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEe--------------
Confidence 4578999999999988877765544321 0122334433 333 333333344444444544322
Q ss_pred HHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 396 WQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 396 w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
+.++..+...+.. +.+.++||+|++.+...+...-..+..++..... ..-.+|-|+||-.
T Consensus 239 -----------~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~-~~e~~LVlsat~~ 298 (388)
T PRK12723 239 -----------IESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGR-DAEFHLAVSSTTK 298 (388)
T ss_pred -----------eCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCC-CCeEEEEEcCCCC
Confidence 2244445544443 4678999999999986532122234444443221 1235788999854
|
|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.16 Score=69.13 Aligned_cols=101 Identities=11% Similarity=0.051 Sum_probs=65.3
Q ss_pred CCCcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcE
Q 000174 302 EQARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVV 379 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v 379 (1931)
..+++-|++++..++. +-++|.++.|+|||.+.-.++ +.+.. .+.++++++||---+ ..+..-+|+..
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~-~~~~~-----~g~~V~~~ApTg~Aa----~~L~~~~g~~a 420 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAR-EAWEA-----AGYRVIGAALSGKAA----EGLQAESGIES 420 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHH-HHHHh-----CCCeEEEEeCcHHHH----HHHHhccCCce
Confidence 5689999999999887 457999999999997755543 33332 256799999995443 34444334322
Q ss_pred EEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 380 GHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 380 ~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
. |-..+...+..+...+...++||+|||-.+..
T Consensus 421 ~----------------------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~ 453 (744)
T TIGR02768 421 R----------------------------TLASLEYAWANGRDLLSDKDVLVIDEAGMVGS 453 (744)
T ss_pred e----------------------------eHHHHHhhhccCcccCCCCcEEEEECcccCCH
Confidence 2 11222111222333456789999999988754
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >KOG1805 consensus DNA replication helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.062 Score=70.63 Aligned_cols=128 Identities=13% Similarity=0.039 Sum_probs=88.8
Q ss_pred CCCCCcHHHHHHHHHHhc-c-CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCC
Q 000174 300 PEEQARPYQLDVLEQAKK-K-NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY 377 (1931)
Q Consensus 300 ~~~~~~~~Q~eai~~~l~-~-n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l 377 (1931)
....|..-|++|+-.++. + -.+|.+-+|+|||-....+|+-++. .+++||+.+=|..-|..+.-.++. +
T Consensus 666 ~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~------~gkkVLLtsyThsAVDNILiKL~~---~ 736 (1100)
T KOG1805|consen 666 ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVA------LGKKVLLTSYTHSAVDNILIKLKG---F 736 (1100)
T ss_pred HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHH------cCCeEEEEehhhHHHHHHHHHHhc---c
Confidence 456899999999999998 4 4688899999999888888776665 367799999998777766665554 2
Q ss_pred cEEEEeCCCc---------------ccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 378 VVGHYCGEMG---------------QDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 378 ~v~~~~G~~~---------------~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
.+.++.=|+. .....-+.....++...||.+|---+.+.| +...++++.|+|||-.+.-
T Consensus 737 ~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl----f~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 737 GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL----FVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh----hhccccCEEEEcccccccc
Confidence 2222211110 000112334456678899999976554333 4567799999999988765
|
|
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.095 Score=69.17 Aligned_cols=67 Identities=13% Similarity=0.094 Sum_probs=48.2
Q ss_pred CcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH
Q 000174 304 ARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR 372 (1931)
Q Consensus 304 ~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~ 372 (1931)
..++|++|+..++. +-++|.+++|+|||.+...++..+.... ..+..++++++||.--+....+.+.
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~--~~~~~~i~l~APTgkAA~rL~e~~~ 220 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLA--DGERCRIRLAAPTGKAAARLTESLG 220 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhc--CCCCcEEEEECCcHHHHHHHHHHHH
Confidence 35899999999988 6789999999999987666555443321 1234579999999766555554443
|
|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.12 Score=68.19 Aligned_cols=67 Identities=19% Similarity=0.207 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH
Q 000174 306 PYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE 373 (1931)
Q Consensus 306 ~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~ 373 (1931)
+.|++++..++. +-++|.++.|+|||.+...++..+..... ...+.++++.+||---+....+.+..
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~-~~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSP-KQGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhcc-ccCCCcEEEECCcHHHHHHHHHHHHh
Confidence 799999999998 66899999999999877666554433221 11135799999997666655555543
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.14 Score=70.72 Aligned_cols=101 Identities=14% Similarity=0.047 Sum_probs=64.7
Q ss_pred CCCcHHHHHHHHHHhc-c-CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcE
Q 000174 302 EQARPYQLDVLEQAKK-K-NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVV 379 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-~-n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v 379 (1931)
..+++-|++++..++. + -++|.+..|+|||.+ +-.+...+.. .+.+|+.++||---+ ..+..-+|+..
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~-----~G~~V~~~ApTGkAA----~~L~e~tGi~a 414 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA-----AGYEVRGAALSGIAA----ENLEGGSGIAS 414 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH-----cCCeEEEecCcHHHH----HHHhhccCcch
Confidence 5799999999999988 4 378999999999986 3445554443 256799999996433 34443222211
Q ss_pred EEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 380 GHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 380 ~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
. |-..|+.....+...+...++||||||-.+..
T Consensus 415 ~----------------------------TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~ 447 (988)
T PRK13889 415 R----------------------------TIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT 447 (988)
T ss_pred h----------------------------hHHHHHhhhcccccccccCcEEEEECcccCCH
Confidence 1 22222211122333456778999999987644
|
|
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.075 Score=63.04 Aligned_cols=148 Identities=20% Similarity=0.249 Sum_probs=85.7
Q ss_pred CCCCCCcHHHHHHHHHHhcc---CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000174 299 MPEEQARPYQLDVLEQAKKK---NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT 375 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~~---n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~ 375 (1931)
.|+....-+|.-|+..++.. =+.+.+.-|||||+-|+....+-... ...-.++||-=|++++-
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e---~~~y~KiiVtRp~vpvG----------- 289 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLE---RKRYRKIIVTRPTVPVG----------- 289 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHH---HhhhceEEEecCCcCcc-----------
Confidence 45566677888999999883 36889999999999998865433222 22345688888887663
Q ss_pred CCcEEEEeCCCcccccchHHHHhhc-CCccEEE----EcHHHHHHHHhccccccccee----------EEEEeCCCcccC
Q 000174 376 GYVVGHYCGEMGQDFWDAQRWQREF-DTKQVLV----MTAQILLNILRHSIIKMEAIN----------LLILDECHHAVK 440 (1931)
Q Consensus 376 ~l~v~~~~G~~~~~~~~~~~w~~~~-~~~~IlV----~Tpq~L~d~L~~~~l~l~~i~----------lLV~DEaH~~~~ 440 (1931)
-.++.+-|.... +-..|...+ .+-.+++ ++-+.|...+.++.+.+..+. +||+|||+.+..
T Consensus 290 -~dIGfLPG~eEe---Km~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp 365 (436)
T COG1875 290 -EDIGFLPGTEEE---KMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP 365 (436)
T ss_pred -cccCcCCCchhh---hccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH
Confidence 223333333211 122343322 1212222 235677777777665443333 899999999965
Q ss_pred CCcHHHHHHHHHhhcCCCCCcEEEEEeecCCC
Q 000174 441 KHPYSLVMSEFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 441 ~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
| .|+.++.+.-. ..+ +-+|+-|.+
T Consensus 366 -h----eikTiltR~G~--GsK-IVl~gd~aQ 389 (436)
T COG1875 366 -H----ELKTILTRAGE--GSK-IVLTGDPAQ 389 (436)
T ss_pred -H----HHHHHHHhccC--CCE-EEEcCCHHH
Confidence 2 34445544322 234 445665553
|
|
| >KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.017 Score=69.21 Aligned_cols=66 Identities=24% Similarity=0.225 Sum_probs=56.3
Q ss_pred chHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHH
Q 000174 1853 FTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELL 1926 (1931)
Q Consensus 1853 n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L 1926 (1931)
.-+-.|+||+|+-.-..|+|++.+.+.+ +-.|...|.++...|+ .|.| .|||.||..||+.+|+.|
T Consensus 376 s~vCiLhEy~q~~lk~~pvyef~e~~n~--stpysa~v~~d~~~yG---sG~g---~sKK~Ak~~AAR~tLeiL 441 (650)
T KOG4334|consen 376 SKVCILHEYAQQCLKSLPVYEFAENDNN--STPYSAGVLPDLFPYG---SGVG---ASKKTAKLVAARDTLEIL 441 (650)
T ss_pred eeeehHHHHHHHHhhhcceeehhhccCC--CCcccccccccccccc---cccc---cchHHHHHHHHHHHHHHh
Confidence 4468899999999999999987665544 4569999999988777 7888 999999999999999876
|
|
| >KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.064 Score=67.43 Aligned_cols=63 Identities=29% Similarity=0.269 Sum_probs=52.6
Q ss_pred CCCChHHHHHHHHhhcCCceeEEecc-----CCeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhh
Q 000174 1764 PMHPVRELQERCQQQAEGLEYKASRS-----GNLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEKE 1831 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~~~y~~~~~-----g~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~ 1831 (1931)
.++|+..|+|+.+ .+.|..... .+.|.|.|.|+|+.+-.| |.|||+||+.||..||+.|....
T Consensus 89 ~~npv~ll~e~~~----~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~~-~~sKk~ak~~aa~~al~~l~~~~ 156 (542)
T KOG2777|consen 89 GKNPVSLLHELAN----GLFFDFVNESGPQHAPKFVMSVVVDGRWFEGG-GRSKKEAKQEAAMAALQVLFKID 156 (542)
T ss_pred cCCchHHHHHHhc----ccceeeeccCCCCCCceEEEEEEECCEEccCC-CcchHHHHHHHHHHHHHHHHhcc
Confidence 7899999999997 566664322 247999999999997777 99999999999999999997653
|
|
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.046 Score=66.93 Aligned_cols=123 Identities=15% Similarity=0.037 Sum_probs=76.8
Q ss_pred CcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEe
Q 000174 304 ARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYC 383 (1931)
Q Consensus 304 ~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~ 383 (1931)
+++-|.+++.. ..++++|.|..|||||.+.+.-+.+++... .....++|+|++|+..+....+.+...++-...
T Consensus 1 l~~eQ~~~i~~-~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~--~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~--- 74 (315)
T PF00580_consen 1 LTDEQRRIIRS-TEGPLLVNAGAGSGKTTTLLERIAYLLYEG--GVPPERILVLTFTNAAAQEMRERIRELLEEEQQ--- 74 (315)
T ss_dssp S-HHHHHHHHS--SSEEEEEE-TTSSHHHHHHHHHHHHHHTS--SSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCH---
T ss_pred CCHHHHHHHhC-CCCCEEEEeCCCCCchHHHHHHHHHhhccc--cCChHHheecccCHHHHHHHHHHHHHhcCcccc---
Confidence 57889999999 779999999999999999998887777642 134456999999999999888888875421100
Q ss_pred CCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccc--cceeEEEEeCCC
Q 000174 384 GEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKM--EAINLLILDECH 436 (1931)
Q Consensus 384 G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l--~~i~lLV~DEaH 436 (1931)
.... .............+.|+|-..+...+-+..... -.-++-|+|+..
T Consensus 75 --~~~~--~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 75 --ESSD--NERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp --CCTT---HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred --cccc--cccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 0000 001111111345688999988876543322211 122355666655
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.12 Score=60.51 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=20.0
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
..+++++|+|+|||..+.....+..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5689999999999988776655443
|
|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.12 Score=63.07 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=40.3
Q ss_pred CCcHHHHHHHHHHh--------c-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHH
Q 000174 303 QARPYQLDVLEQAK--------K-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQ 367 (1931)
Q Consensus 303 ~~~~~Q~eai~~~l--------~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~ 367 (1931)
.++..+..++..+. . .+++++++||+|||..+..++.+++.. +..|+++ +...|..+.
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~------g~~V~y~-t~~~l~~~l 226 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDR------GKSVIYR-TADELIEIL 226 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHC------CCeEEEE-EHHHHHHHH
Confidence 56777777777543 1 689999999999999888888777652 3445554 444554433
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.04 Score=62.18 Aligned_cols=34 Identities=12% Similarity=0.149 Sum_probs=25.9
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP 359 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP 359 (1931)
.++.+++|+|||..++..+.+... .+.+++++-|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~------~g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEE------RGMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHH------cCCeEEEEec
Confidence 478999999999888877766544 2466888866
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.24 Score=58.06 Aligned_cols=44 Identities=14% Similarity=0.125 Sum_probs=30.5
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQA 368 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~ 368 (1931)
.++++.+++|+|||..+..++.+++.. +..++ .++..+|..+..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~------g~~v~-~i~~~~l~~~l~ 145 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAK------GRSVI-VVTVPDVMSRLH 145 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc------CCCeE-EEEHHHHHHHHH
Confidence 478999999999999999888777642 23344 444455655443
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.31 Score=56.94 Aligned_cols=47 Identities=17% Similarity=0.204 Sum_probs=33.2
Q ss_pred cHHHHHHHHHHhc---------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEE
Q 000174 305 RPYQLDVLEQAKK---------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFL 357 (1931)
Q Consensus 305 ~~~Q~eai~~~l~---------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~L 357 (1931)
.+-|..++..+.+ ..+++.+++|+|||..+..++.++... +..++++
T Consensus 78 ~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~------g~~v~~i 133 (244)
T PRK07952 78 CEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR------GKSVLII 133 (244)
T ss_pred CchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc------CCeEEEE
Confidence 4556666665543 368999999999999998888776542 3456555
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.38 Score=57.16 Aligned_cols=57 Identities=19% Similarity=0.239 Sum_probs=37.5
Q ss_pred CcHHHHHHHHHH----hc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHH
Q 000174 304 ARPYQLDVLEQA----KK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQ 367 (1931)
Q Consensus 304 ~~~~Q~eai~~~----l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~ 367 (1931)
+...|..++..+ -+ +|+++++++|+|||..+..+..+.+.. +..|+|+ +...|+.+.
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~------g~~v~f~-~~~~L~~~l 149 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIEN------GWRVLFT-RTTDLVQKL 149 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHc------CCceeee-eHHHHHHHH
Confidence 455666666433 23 889999999999999888877766552 3445554 344555543
|
|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.088 Score=62.11 Aligned_cols=65 Identities=17% Similarity=0.206 Sum_probs=46.2
Q ss_pred CCCCcHHHHHHHHHHhc--------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH
Q 000174 301 EEQARPYQLDVLEQAKK--------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR 372 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~--------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~ 372 (1931)
+.-....++.++..+.. .|+++.+++|+|||..+..+..+++. .+.-+..+++.+|+.++...+.
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~-------~g~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 81 FEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLK-------AGISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred ccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHH-------cCCeEEEEEHHHHHHHHHHHHh
Confidence 34444566666655542 68999999999999999998888774 2345666677788777666554
|
|
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.24 Score=52.81 Aligned_cols=44 Identities=23% Similarity=0.236 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhcCC-ceEEEEecccccCCCCCC--CCEEEEcCCCC
Q 000174 766 TFQMQETIAKFRDGR-VTLLVATSVAEEGLDIRQ--CNVVIRFDLAK 809 (1931)
Q Consensus 766 ~~~R~~~l~~Fr~G~-~~vLVaTdVaeeGlDip~--~~lVI~fD~p~ 809 (1931)
..+..+++++|+... ..||++|.-..||||+|+ |..||...+|.
T Consensus 33 ~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 33 GKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred hhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 345688999999654 369999977999999999 67888877664
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.34 Score=66.13 Aligned_cols=97 Identities=14% Similarity=0.248 Sum_probs=67.3
Q ss_pred HHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCC---CCceeEEEEccCCCccccHHHHHHHHHHhhc----C
Q 000174 707 QSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSL---SFVKSASLIGHNNSQEMRTFQMQETIAKFRD----G 779 (1931)
Q Consensus 707 ~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l---~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~----G 779 (1931)
..+.+.|.+........+|||.++-...+.+.+.+.....+ ...+..++-+. + ..++.+++++|+. |
T Consensus 508 ~~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~----~--~~~~~~~l~~f~~~~~~~ 581 (705)
T TIGR00604 508 RNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETK----D--AQETSDALERYKQAVSEG 581 (705)
T ss_pred HHHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCC----C--cchHHHHHHHHHHHHhcC
Confidence 45556565553344578999999999888888877652100 01123344331 1 1467889999974 4
Q ss_pred CceEEEEe--cccccCCCCCC--CCEEEEcCCCC
Q 000174 780 RVTLLVAT--SVAEEGLDIRQ--CNVVIRFDLAK 809 (1931)
Q Consensus 780 ~~~vLVaT--dVaeeGlDip~--~~lVI~fD~p~ 809 (1931)
+-.||+|+ ...+||||+++ +..||...+|.
T Consensus 582 ~gavL~av~gGk~sEGIDf~~~~~r~ViivGlPf 615 (705)
T TIGR00604 582 RGAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPY 615 (705)
T ss_pred CceEEEEecCCcccCccccCCCCCcEEEEEccCC
Confidence 55699999 78999999999 88999998886
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.54 Score=49.81 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=19.9
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
+.+++.+++|+|||..+...+..+.
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhh
Confidence 5689999999999987776665543
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.32 Score=58.18 Aligned_cols=38 Identities=18% Similarity=0.096 Sum_probs=26.8
Q ss_pred CCCcHHHHHHHHHHh---c---cCEEEEeCCCchHHHHHHHHHH
Q 000174 302 EQARPYQLDVLEQAK---K---KNTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l---~---~n~Il~~~TGsGKTliall~i~ 339 (1931)
.-+++.+.+++..+. . ..+++.+++|+|||..+-..+.
T Consensus 22 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~ 65 (269)
T TIGR03015 22 FYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLK 65 (269)
T ss_pred hCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 445666666766653 2 3578999999999987776543
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.067 Score=67.60 Aligned_cols=149 Identities=20% Similarity=0.150 Sum_probs=96.6
Q ss_pred CCCChHHHHHHHHhhcCCceeE-------EeccCC----eEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhh--
Q 000174 1764 PMHPVRELQERCQQQAEGLEYK-------ASRSGN----LATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEK-- 1830 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~~~y~-------~~~~g~----~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~-- 1830 (1931)
+.+|...+..+-+ +...++|+ ++..+| .|+.+|.++|.. .+..|.||+.|+..||.+.|......
T Consensus 369 f~d~nak~mhl~g-rRhrLQYk~kv~p~Lvv~t~P~~~~~~t~e~r~~~~~-~~a~gps~~~~~wh~~~k~lq~~~~p~g 446 (816)
T KOG3792|consen 369 FNDPNAKEMHLKG-RRHRLQYKQKVDPDLVVDTKPSHRPRRTMEVRVNGLP-AEAEGPSKKTAKWHAARKRLQNEGRPTG 446 (816)
T ss_pred CCCcchHHhhhhc-ccccceeccccCCCceeccCCcccchhhhhhhhcCCc-cccCCcccccchHHHHHHHhhccCCCcc
Confidence 3455555555543 33456887 234443 689999999887 56779999999999999998876310
Q ss_pred --------hhhhhhccC--CcCCcc-------c---------------------CCCCccchHHHHHHHHHHcCCCCCcc
Q 000174 1831 --------ETAEAKEKG--DENGKK-------R---------------------KNGTQTFTRQTLNDICLRRNWPMPLY 1872 (1931)
Q Consensus 1831 --------~~~~~~~~~--~~~~~~-------~---------------------~~~~~~n~~~~L~e~~~~~~~~~p~y 1872 (1931)
+........ ...... . ......|++..|+|--... .|
T Consensus 447 a~~r~~~~ge~~a~~p~~~~r~~as~ddr~a~~~~a~~~Pt~~~l~nVqr~vs~~~~alK~vsd~L~Ek~rg~-----k~ 521 (816)
T KOG3792|consen 447 AAQRFGRMGEDPASMPEPKGRRPASVDDRHANEKHAGIYPTEEELENVQRQVSHLERALKLVSDELAEKRRGD-----KY 521 (816)
T ss_pred ccccccccCCCcccCCCCCCcccCCCcchhhhccccccCccHHHHHHHHHhhhHHHHhhcchhHHHhhhcccc-----ce
Confidence 000000000 000000 0 0011256788888853333 38
Q ss_pred eeecccC-CCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHH
Q 000174 1873 RCVREGG-PAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELL 1926 (1931)
Q Consensus 1873 ~~~~~~G-p~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L 1926 (1931)
++..+.| -+|.+.|++.|.+. ++.+.|.| .+||-|+..||.-+++.+
T Consensus 522 El~set~~gs~~~R~v~gV~rv----G~~akG~~---~~gd~a~~~a~Lca~~pt 569 (816)
T KOG3792|consen 522 ELPSETGTGSHDKRFVKGVMRV----GILAKGLL---LNGDRAVELALLCAEKPT 569 (816)
T ss_pred ecccccCCCCCCceeeeeeeee----ehhhcccc---ccchHHHHHHHHhccCcc
Confidence 8888888 89999999999995 45778899 999999999988876544
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.85 Score=60.68 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=28.4
Q ss_pred CcHHHHHHHHHHhc--------cCE-EEEeCCCchHHHHHHHHHHHHHH
Q 000174 304 ARPYQLDVLEQAKK--------KNT-IAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 304 ~~~~Q~eai~~~l~--------~n~-Il~~~TGsGKTliall~i~~~l~ 343 (1931)
-|+-|.+.|..++. .++ .|+++||+|||.+.-..+.++..
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46666666655443 345 49999999999998888766543
|
|
| >smart00491 HELICc2 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.31 Score=52.05 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=33.9
Q ss_pred HHHHHHHHhhcCCc---eEEEEecc--cccCCCCCC--CCEEEEcCCCC
Q 000174 768 QMQETIAKFRDGRV---TLLVATSV--AEEGLDIRQ--CNVVIRFDLAK 809 (1931)
Q Consensus 768 ~R~~~l~~Fr~G~~---~vLVaTdV--aeeGlDip~--~~lVI~fD~p~ 809 (1931)
+..+++++|++..- .||+++.- ..||||+|+ |..||...+|.
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 34688999996543 59998876 899999999 78899888774
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.16 Score=53.43 Aligned_cols=39 Identities=18% Similarity=0.148 Sum_probs=27.4
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChh
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVP 362 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~ 362 (1931)
+.+++.+++|+|||..+..++..+.. ....++++.+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~------~~~~~~~~~~~~~ 41 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP------PGGGVIYIDGEDI 41 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC------CCCCEEEECCEEc
Confidence 46899999999999988887665422 1124777776643
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=93.32 E-value=1.2 Score=55.26 Aligned_cols=119 Identities=13% Similarity=0.046 Sum_probs=64.5
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC-C-hhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP-K-VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQR 395 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP-T-~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~ 395 (1931)
+.+++++|||+|||.....++....... +..++.++.. + +.=+.+|...+.+.+++.+..+
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~----G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~------------- 200 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRF----GASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAV------------- 200 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhc----CCCeEEEEecccccccHHHHHHHHHHHcCCceEec-------------
Confidence 4578999999999988888776654321 1133444432 2 1123344444445555544432
Q ss_pred HHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 396 WQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 396 w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
.+++.+...+. .+.+.++|+||++=+...+......+..+.... ...-.+|.++||-.
T Consensus 201 ------------~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~--~~~~~lLVLsAts~ 258 (374)
T PRK14722 201 ------------KDGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGAD--TPVQRLLLLNATSH 258 (374)
T ss_pred ------------CCcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccC--CCCeEEEEecCccC
Confidence 23333333332 245679999999966543323333444332211 11245788899854
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.66 Score=52.56 Aligned_cols=121 Identities=13% Similarity=0.069 Sum_probs=69.6
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe-C-ChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV-P-KVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQ 397 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv-P-T~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~ 397 (1931)
+++++|||+|||-...-++.++..+ +.++.+++ - -|.=+..|.+.+.+.+++++....-...
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~------~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~---------- 67 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK------GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESD---------- 67 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT------T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSC----------
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc------cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchh----------
Confidence 5789999999998888877665442 33444444 2 3444555666666666666544221110
Q ss_pred hhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 398 REFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 398 ~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
..+.+.+.+.. ...++.++|++|-+-+...+......|+.+..... ..-..|.|+||-.
T Consensus 68 -----------~~~~~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~--~~~~~LVlsa~~~ 126 (196)
T PF00448_consen 68 -----------PAEIAREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALN--PDEVHLVLSATMG 126 (196)
T ss_dssp -----------HHHHHHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHS--SSEEEEEEEGGGG
T ss_pred -----------hHHHHHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcC--CccceEEEecccC
Confidence 01122233332 23456899999999877654344555666666542 2245788888854
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.25 Score=57.72 Aligned_cols=24 Identities=25% Similarity=0.129 Sum_probs=19.2
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l 342 (1931)
-+++++++|+|||..+.....+..
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~ 66 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAE 66 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999988777665543
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.28 Score=57.22 Aligned_cols=25 Identities=8% Similarity=-0.048 Sum_probs=20.5
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
.+++++++|+|||..+.....++..
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~ 65 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLL 65 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3689999999999988887766554
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.83 Score=55.97 Aligned_cols=120 Identities=17% Similarity=0.108 Sum_probs=65.7
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC---hhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK---VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRW 396 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT---~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w 396 (1931)
+++.+++|+|||-....++..+.. .+.+++++..- ..-..|+.... ..+++++.....+ .+.
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~~------~g~~V~li~~Dt~R~~a~eqL~~~a-~~lgv~v~~~~~g--~dp------ 207 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLKK------NGFSVVIAAGDTFRAGAIEQLEEHA-ERLGVKVIKHKYG--ADP------ 207 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH------cCCeEEEecCCcCcHHHHHHHHHHH-HHcCCceecccCC--CCH------
Confidence 678999999999877776654332 23456555432 34455554433 3456554321111 100
Q ss_pred HhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 397 QREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 397 ~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
...+.+.+.. ......++||+|.+.++..+...-..++.+..... ..-.+|.++||..
T Consensus 208 -------------~~v~~~ai~~--~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~--pd~~iLVl~a~~g 265 (336)
T PRK14974 208 -------------AAVAYDAIEH--AKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTK--PDLVIFVGDALAG 265 (336)
T ss_pred -------------HHHHHHHHHH--HHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhC--CceEEEeeccccc
Confidence 0112233332 12245689999999999755445555555554332 2245677888754
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.28 Score=57.42 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=25.4
Q ss_pred cceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeec
Q 000174 425 EAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTAS 469 (1931)
Q Consensus 425 ~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTAT 469 (1931)
.+.++||+|+.|...+...+...+-.++......+ +.+.+|++
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g--~~ilits~ 138 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSG--RRLLLAAS 138 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcC--CEEEEeCC
Confidence 35679999999988765444444444444332222 34566665
|
|
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.9 Score=63.34 Aligned_cols=102 Identities=14% Similarity=0.056 Sum_probs=66.2
Q ss_pred CCCCcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCc
Q 000174 301 EEQARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYV 378 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~ 378 (1931)
...|++-|.+++..+.. +-++|.+.-|+|||.+.-... ..+.. .+.+|+.++||-- .+..|.+.+|+.
T Consensus 379 ~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~-~~~e~-----~G~~V~g~ApTgk----AA~~L~e~~Gi~ 448 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAR-EAWEA-----AGYRVVGGALAGK----AAEGLEKEAGIQ 448 (1102)
T ss_pred CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHH-HHHHH-----cCCeEEEEcCcHH----HHHHHHHhhCCC
Confidence 35799999999998865 457899999999997665543 33332 3567999999953 445666655554
Q ss_pred EEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 379 VGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 379 v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
...++ .++-....+...+..-++||||||..+..
T Consensus 449 a~TIa----------------------------s~ll~~~~~~~~l~~~~vlVIDEAsMv~~ 482 (1102)
T PRK13826 449 SRTLS----------------------------SWELRWNQGRDQLDNKTVFVLDEAGMVAS 482 (1102)
T ss_pred eeeHH----------------------------HHHhhhccCccCCCCCcEEEEECcccCCH
Confidence 33322 11101111223456677999999987744
|
|
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.24 Score=62.06 Aligned_cols=107 Identities=15% Similarity=0.191 Sum_probs=66.9
Q ss_pred CCcHHHHHHHHHHh------c-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHH--HHHHHH
Q 000174 303 QARPYQLDVLEQAK------K-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQ--AEVIRE 373 (1931)
Q Consensus 303 ~~~~~Q~eai~~~l------~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~--~~~l~~ 373 (1931)
+|.+-|++++..++ + .++.|.++-|+|||++.-.++..+ . ..+..+++++||-.=|..+ -..++.
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~-~-----~~~~~~~~~a~tg~AA~~i~~G~T~hs 74 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL-R-----SRGKKVLVTAPTGIAAFNIPGGRTIHS 74 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh-c-----cccceEEEecchHHHHHhccCCcchHH
Confidence 46788999988883 3 678999999999999876655433 2 2356799999997555444 344555
Q ss_pred HcCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 374 QTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 374 ~~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
++++.+..-. .. ..-+.....+ .-.+..+++||+||+=.+..
T Consensus 75 ~f~i~~~~~~----~~--------------~~~~~~~~~~-------~~~l~~~~~lIiDEism~~~ 116 (364)
T PF05970_consen 75 FFGIPINNNE----KS--------------QCKISKNSRL-------RERLRKADVLIIDEISMVSA 116 (364)
T ss_pred hcCccccccc----cc--------------cccccccchh-------hhhhhhheeeecccccchhH
Confidence 5555433210 00 0000011111 12467889999999977755
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.56 Score=54.52 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=20.8
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
.++++.+++|+|||..+.....+..
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAE 63 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6799999999999998887766543
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.2 Score=65.07 Aligned_cols=156 Identities=19% Similarity=0.201 Sum_probs=110.2
Q ss_pred CChHHHHHHHHhhcCCceeEEeccCC----eEEEEEEECCEEE-EEeecCCHHHHHHHHHHHHHHHHHhhhhhhhhccCC
Q 000174 1766 HPVRELQERCQQQAEGLEYKASRSGN----LATVEVYIDGVQV-GVAQNPQKKMAQKLAARNALAVLKEKETAEAKEKGD 1840 (1931)
Q Consensus 1766 ~P~~~L~e~~~~~~~~~~y~~~~~g~----~f~v~V~v~g~~~-~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~~~~~ 1840 (1931)
+-+.-|..||.+....+.|.+..+++ .|.|.|.+.+..+ +.|....||.|+..||+.-++.|-..+...+....+
T Consensus 2 d~k~fly~~~~k~~~~p~~d~~~~~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylvr~Gk~n~~d~p~ 81 (1282)
T KOG0921|consen 2 DVKEFLYAWLGKNKYGPTYDIRSEGRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLVREGKMQQSDIPT 81 (1282)
T ss_pred cHHHHHHHHHhhhccCcceehhhhcccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhhhhccccccCCcc
Confidence 34677899999999999999876653 6899999887543 677788899999999999999886544332221100
Q ss_pred c---------------------------------CC-----------------------------------------ccc
Q 000174 1841 E---------------------------------NG-----------------------------------------KKR 1846 (1931)
Q Consensus 1841 ~---------------------------------~~-----------------------------------------~~~ 1846 (1931)
. ++ ...
T Consensus 82 ~~s~s~~~~~~l~~~~~a~~~~~~~~g~~~q~~~qd~p~~~~p~~~d~~~~~~g~~~~~~~qkae~~~e~ea~d~~~~ih 161 (1282)
T KOG0921|consen 82 LTSSSLEASSTWQDSETATMFCGGEDGNSFQESQQPIPQKRFPWSNNAYQRNEGTHEQYITQKAEEIAESETVDLNAEIH 161 (1282)
T ss_pred cccccccCcccccccccccccccccccccCCCCCCCcccccccccccccccCCCCCchhHHHHhhhhhhhhhhccCcccc
Confidence 0 00 000
Q ss_pred CCCCccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecC--CCcceeEECCCCCCHHHHHHHHHHHHHH
Q 000174 1847 KNGTQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTD--KGWTDECVGEPMPSVKKAKDSAAVLLLE 1924 (1931)
Q Consensus 1847 ~~~~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~--~~~~~~g~g~~~~sKK~Ak~~AA~~~l~ 1924 (1931)
.+....|.+..|+++-|+.....- |+ ....||.|.+.|+.+..+-... ...+..+.| ++||.|....|.....
T Consensus 162 g~wt~eN~K~~ln~~~q~~~~~~~-y~-~~~~g~~~~~s~~~e~si~v~~~~~~~~~~~~g---snkk~~~~~ca~s~vr 236 (1282)
T KOG0921|consen 162 GNWTMENAKKALNEYLQKMRIQDN-YK-YTIVGPEHVRSFEAEASIYVPQLNRNLVAKETG---SNKKVAEASCALSLVR 236 (1282)
T ss_pred CCCCcchhHHHHhHHHhhhhhccc-cc-eeecCCccccchhhhHHHhhhhhchhhhhhhcc---ccceecCcchHHHHHH
Confidence 011126899999999999998444 76 4478999999999987764332 233445678 9999999999887766
Q ss_pred HH
Q 000174 1925 LL 1926 (1931)
Q Consensus 1925 ~L 1926 (1931)
+|
T Consensus 237 qm 238 (1282)
T KOG0921|consen 237 QL 238 (1282)
T ss_pred HH
Confidence 54
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=92.37 E-value=1.2 Score=55.01 Aligned_cols=117 Identities=17% Similarity=0.195 Sum_probs=63.0
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC-C--hhHHHHHHHHHHHHcCCcEEEEeCCCcccccchH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP-K--VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQ 394 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP-T--~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~ 394 (1931)
+.+.++++||+|||.....++..+.. .+.++.++.- + ..-+.||..... ..++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~------~GkkVglI~aDt~RiaAvEQLk~yae-~lgipv--------------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHG------KKKTVGFITTDHSRIGTVQQLQDYVK-TIGFEV--------------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHH------cCCcEEEEecCCcchHHHHHHHHHhh-hcCCcE---------------
Confidence 45789999999999887777665433 1334444443 3 234455443222 222222
Q ss_pred HHHhhcCCccEEEEcHHHHHHHHhccccc-ccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecC
Q 000174 395 RWQREFDTKQVLVMTAQILLNILRHSIIK-MEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASP 470 (1931)
Q Consensus 395 ~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~-l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP 470 (1931)
+++.+|..+.+.+.. +. -.+.++||+|-+=+...+...-..+..+..... ..-.+|-++||-
T Consensus 300 ----------~v~~d~~~L~~aL~~--lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~--PdevlLVLsATt 362 (436)
T PRK11889 300 ----------IAVRDEAAMTRALTY--FKEEARVDYILIDTAGKNYRASETVEEMIETMGQVE--PDYICLTLSASM 362 (436)
T ss_pred ----------EecCCHHHHHHHHHH--HHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcC--CCeEEEEECCcc
Confidence 223467777766643 11 125899999998776554333333344443221 112345677773
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=92.18 E-value=1.5 Score=55.78 Aligned_cols=120 Identities=13% Similarity=0.091 Sum_probs=65.6
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC-C-hhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP-K-VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQR 395 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP-T-~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~ 395 (1931)
+.++++++||+|||.....++..+... ..+.+|.+|.- + +.-+..+.......+++.+
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~----~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~---------------- 281 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALL----YGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV---------------- 281 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHh----cCCCeEEEEECCccHHHHHHHHHHHHHHhCCce----------------
Confidence 356889999999998777766555411 12334554442 2 1111112222222233322
Q ss_pred HHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 396 WQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 396 w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
.++.++..+...+.. +.+.++||||-+-+...+......+..++... .......|.++||..
T Consensus 282 ---------~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~-~~~~~~~LVl~a~~~ 343 (424)
T PRK05703 282 ---------EVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFS-GEPIDVYLVLSATTK 343 (424)
T ss_pred ---------EccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhcc-CCCCeEEEEEECCCC
Confidence 223445555555543 34689999999977655444455566665521 122355788999865
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.72 Score=55.00 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=20.6
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~ 341 (1931)
.++++.+|+|+|||.++-+.+..+
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999988877654
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
Probab=91.42 E-value=1.4 Score=57.70 Aligned_cols=147 Identities=15% Similarity=0.160 Sum_probs=83.3
Q ss_pred CCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcC----
Q 000174 302 EQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG---- 376 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~---- 376 (1931)
..|.|+|++.+..+.. +-.++..+=..|||.+....+...+.. .++..+++++|+..-+....+.++....
T Consensus 58 f~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~----~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~ 133 (534)
T PHA02533 58 VQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF----NKDKNVGILAHKASMAAEVLDRTKQAIELLPD 133 (534)
T ss_pred cCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh----CCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHH
Confidence 6799999999988754 555788888999998777655433321 2345899999998877777666664321
Q ss_pred -CcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhc
Q 000174 377 -YVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTT 455 (1931)
Q Consensus 377 -l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~ 455 (1931)
++..+... .... ...-.+..|.+.|... +...-...+++|+||+|...+ +..+...++...
T Consensus 134 l~~~~i~~~-------~~~~-I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~---~~e~~~ai~p~l 195 (534)
T PHA02533 134 FLQPGIVEW-------NKGS-IELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPN---FIDFWLAIQPVI 195 (534)
T ss_pred Hhhcceeec-------CccE-EEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCC---HHHHHHHHHHHH
Confidence 11111100 0000 0001345554544321 112334567999999998754 234444444443
Q ss_pred CCCCCcEEEEEeecCC
Q 000174 456 SKEKRPSVFGMTASPV 471 (1931)
Q Consensus 456 ~~~~~p~iLgLTATP~ 471 (1931)
......+ +.+..||.
T Consensus 196 asg~~~r-~iiiSTp~ 210 (534)
T PHA02533 196 SSGRSSK-IIITSTPN 210 (534)
T ss_pred HcCCCce-EEEEECCC
Confidence 3322244 44455663
|
|
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.34 Score=65.55 Aligned_cols=90 Identities=13% Similarity=0.104 Sum_probs=68.1
Q ss_pred CCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEE
Q 000174 303 QARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHY 382 (1931)
Q Consensus 303 ~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~ 382 (1931)
.|++-|++++.. ....++|.|..|||||.+.+.-+.+++... .-+..++|+|+-|+.-+....+.+...++..
T Consensus 2 ~Ln~~Q~~av~~-~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~--~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~---- 74 (672)
T PRK10919 2 RLNPGQQQAVEF-VTGPCLVLAGAGSGKTRVITNKIAHLIRGC--GYQARHIAAVTFTNKAAREMKERVAQTLGRK---- 74 (672)
T ss_pred CCCHHHHHHHhC-CCCCEEEEecCCCCHHHHHHHHHHHHHHhc--CCCHHHeeeEechHHHHHHHHHHHHHHhCcc----
Confidence 588999999875 348899999999999999999888887642 2234579999999999988878777654310
Q ss_pred eCCCcccccchHHHHhhcCCccEEEEcHHHHHHHH
Q 000174 383 CGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNIL 417 (1931)
Q Consensus 383 ~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L 417 (1931)
....|.|+|...|...+
T Consensus 75 ------------------~~~~v~i~TfHS~~~~i 91 (672)
T PRK10919 75 ------------------EARGLMISTFHTLGLDI 91 (672)
T ss_pred ------------------cccCcEEEcHHHHHHHH
Confidence 11247899998887543
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.91 Score=58.68 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=31.1
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEV 370 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~ 370 (1931)
+.+++++++|+|||..+.....++... .++.+++++.. ..+..+....
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~----~~~~~v~yi~~-~~~~~~~~~~ 196 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEK----NPNAKVVYVTS-EKFTNDFVNA 196 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHh----CCCCeEEEEEH-HHHHHHHHHH
Confidence 348899999999999888877665542 23455666643 4554443333
|
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=91.14 E-value=1.1 Score=57.17 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=26.2
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP 359 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP 359 (1931)
.+++++++|+|||..+..+..++... ..+..++++..
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~----~~~~~v~yi~~ 174 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILEN----NPNAKVVYVSS 174 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHh----CCCCcEEEEEH
Confidence 46899999999999887776665542 23455666643
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=91.11 E-value=2 Score=53.89 Aligned_cols=39 Identities=26% Similarity=0.438 Sum_probs=27.9
Q ss_pred CcHHHHHHHHHHhc--------cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 304 ARPYQLDVLEQAKK--------KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 304 ~~~~Q~eai~~~l~--------~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
=|.-|.+.+...+. .+++|.+++|+|||.+.-..+.++.
T Consensus 19 gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~ 65 (365)
T TIGR02928 19 HRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELE 65 (365)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 35666655555432 5799999999999988877766553
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=91.05 E-value=0.92 Score=47.41 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=17.6
Q ss_pred EEEEeCCCchHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~ 340 (1931)
+++.+|.|+|||..+-.++.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 589999999999988776654
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=90.86 E-value=43 Score=44.89 Aligned_cols=150 Identities=13% Similarity=0.142 Sum_probs=90.2
Q ss_pred CcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcC-CcEEE
Q 000174 304 ARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG-YVVGH 381 (1931)
Q Consensus 304 ~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~-l~v~~ 381 (1931)
+-+||++++..++. ..+++....|.|=--+++-.+..+ ..++..++ |+.+.+.-.++. ...+. .-+..
T Consensus 14 lL~Ye~qv~~~ll~~d~~L~V~a~GLsl~~l~~~~l~~~------s~~~sL~L-vLN~~~~ee~~f---~s~lk~~~~t~ 83 (892)
T KOG0442|consen 14 LLEYEQQVLLELLEADGNLLVLAPGLSLLRLVAELLILF------SPPGSLVL-VLNTQEAEEEYF---SSKLKEPLVTE 83 (892)
T ss_pred cchhHHHHHHhhhcccCceEEecCCcCHHHHHHHHHHHh------CCccceEE-EecCchhhHHHH---HHhcCcCCCcc
Confidence 78999999999996 555778888988544333322211 12233333 344555544432 22221 11222
Q ss_pred EeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCc
Q 000174 382 YCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRP 461 (1931)
Q Consensus 382 ~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p 461 (1931)
+...... ...+......-|.++|.-+|.-.+-.+.+....+.-|+++-||.+.+...-+-|++.|....+. -
T Consensus 84 ~~s~ls~-----~~R~~~Yl~GGv~fiSsRiLvvDlLt~rIp~~ki~gI~vl~Ah~i~ets~eaFIlRl~R~knk~---g 155 (892)
T KOG0442|consen 84 DPSELSV-----NKRRSKYLEGGVFFISSRILVVDLLTGRIPTEKITGILVLNAHTISETSQEAFILRLYRSKNKT---G 155 (892)
T ss_pred Chhhcch-----hhhHHhhhcCCeEEeeeceeeeehhcCccchhHcceEEEechhhhhhcchhHHHHHHHHHhcCC---c
Confidence 2222222 2222333466788888888877777788999999999999999999876667777766654432 2
Q ss_pred EEEEEeecCC
Q 000174 462 SVFGMTASPV 471 (1931)
Q Consensus 462 ~iLgLTATP~ 471 (1931)
.|=++|-.|.
T Consensus 156 fIkAFsd~P~ 165 (892)
T KOG0442|consen 156 FIKAFSDSPE 165 (892)
T ss_pred ceeccccCch
Confidence 3444555554
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=90.78 E-value=1.7 Score=51.98 Aligned_cols=41 Identities=17% Similarity=0.299 Sum_probs=28.7
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQ 367 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~ 367 (1931)
+++++++|+|||..+..++.+++.. +..++++ +...|+.++
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~~------~~~v~~~-~~~~ll~~i 157 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIEK------GVPVIFV-NFPQLLNRI 157 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc------CCeEEEE-EHHHHHHHH
Confidence 8999999999999999877776552 3445544 444554433
|
|
| >COG1939 Ribonuclease III family protein [Replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=90.71 E-value=0.33 Score=49.09 Aligned_cols=49 Identities=22% Similarity=0.165 Sum_probs=39.1
Q ss_pred CCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHHHHHH
Q 000174 1401 CYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYA 1450 (1931)
Q Consensus 1401 nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L~~~a 1450 (1931)
|-=-|.|+||||+.+.|-.|+....-. ..+.||..-.+.||-+.=+.+-
T Consensus 14 n~laLAy~GDAV~e~yVR~~~l~~g~~-k~~~lH~~a~~~VsAk~QA~il 62 (132)
T COG1939 14 NGLALAYLGDAVYELYVREYLLLKGKT-KPNDLHKRATAYVSAKAQALIL 62 (132)
T ss_pred CHHHHHHhhhHHHHHHHHHHHHhcccC-ChHHHHHHHHHHhhHHHHHHHH
Confidence 334588999999999999988876433 6889999999999888655553
|
|
| >COG3973 Superfamily I DNA and RNA helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.46 E-value=0.73 Score=58.24 Aligned_cols=96 Identities=19% Similarity=0.108 Sum_probs=66.3
Q ss_pred hhhhcCCCCCCcH----HHHHHHHHHhc---cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHH
Q 000174 294 EAKEKMPEEQARP----YQLDVLEQAKK---KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQ 366 (1931)
Q Consensus 294 ~~l~~~~~~~~~~----~Q~eai~~~l~---~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q 366 (1931)
..|++..-.+++. +|.|==+.+.. .-+||.+..|||||-+++.-+..++-..+..-..+.||||.|.+.+..-
T Consensus 196 ~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleY 275 (747)
T COG3973 196 RVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEY 275 (747)
T ss_pred HHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHH
Confidence 5566666666655 34443333333 4478999999999999999887777665554445569999999988776
Q ss_pred HHHHHHHHcCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHH
Q 000174 367 QAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLN 415 (1931)
Q Consensus 367 ~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d 415 (1931)
+..++-++ ....|+..|++-+.-
T Consensus 276 is~VLPeL--------------------------Ge~~V~q~Tf~e~a~ 298 (747)
T COG3973 276 ISRVLPEL--------------------------GEEGVVQETFEEWAL 298 (747)
T ss_pred HHHhchhh--------------------------ccCceeeccHHHHHH
Confidence 66655442 234678889887763
|
|
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=90.25 E-value=0.42 Score=64.92 Aligned_cols=141 Identities=20% Similarity=0.198 Sum_probs=95.9
Q ss_pred CCHHHHHHHHHHHHh-cCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCC
Q 000174 702 VTPKVQSLIKILLKY-QHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGR 780 (1931)
Q Consensus 702 ~s~Kv~~Li~lL~~~-~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~ 780 (1931)
..+|+......+... ..+...++|||++.-...+++...+.- .++.....-+ .+.-...+..|++ -
T Consensus 1201 fg~kI~~v~~~il~iK~k~~qekvIvfsqws~~ldV~e~~~~~----N~I~~~~~~~--------t~d~~dc~~~fk~-I 1267 (1394)
T KOG0298|consen 1201 FGTKIDSVVIAILYIKFKNEQEKVIVFSQWSVVLDVKELRYLM----NLIKKQLDGE--------TEDFDDCIICFKS-I 1267 (1394)
T ss_pred hccCchhHHHHHHHHhccCcCceEEEEEehHHHHHHHHHHHHh----hhhHhhhccC--------Ccchhhhhhhccc-c
Confidence 345555554444332 245568999999999999988877764 3444333322 1233457778877 2
Q ss_pred ceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEEEEe---cCChhHHHHHHHHHHHHHHHHH
Q 000174 781 VTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIE---RGNLSHATFLRNARNSEETLRK 855 (1931)
Q Consensus 781 ~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ivlv~---~~~~~~~~~l~~~~~~e~~l~~ 855 (1931)
-.+|+=++.++-|+|+-++.+|+..++-.|+..-.|.+||..|.|++--.++- -.+...+.++......++.+..
T Consensus 1268 ~clll~~~~~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~l~~~~ee~l~~ 1345 (1394)
T KOG0298|consen 1268 DCLLLFVSKGSKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILSLITSKEETLTK 1345 (1394)
T ss_pred eEEEEEeccCcccccHHhhhhhheeccccCchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHHHhhhhHHHHhh
Confidence 23678889999999999999999999999999999999999999998332221 1223345566555555655544
|
|
| >TIGR02688 conserved hypothetical protein TIGR02688 | Back alignment and domain information |
|---|
Probab=90.20 E-value=1.1 Score=55.67 Aligned_cols=49 Identities=12% Similarity=0.072 Sum_probs=30.8
Q ss_pred cccceeEEEEeCCCcccCCC--cHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 423 KMEAINLLILDECHHAVKKH--PYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 423 ~l~~i~lLV~DEaH~~~~~~--~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
.+..+++|||||.--+.... .-..+|+.++....-.+....+.-.|+.+
T Consensus 257 ~v~~~DlLI~DEvgylp~~~~~~~v~imK~yMesg~fsRG~~~~~a~as~v 307 (449)
T TIGR02688 257 LVGRWDVVAFDEVATLKFAKPKELIGILKNYMESGSFTRGDETKSSDASFV 307 (449)
T ss_pred hhccCCEEEEEcCCCCcCCchHHHHHHHHHHHHhCceeccceeeeeeeEEE
Confidence 36789999999998855322 24567777776543333344555666655
|
Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687. |
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=90.20 E-value=1.5 Score=58.04 Aligned_cols=79 Identities=11% Similarity=0.123 Sum_probs=58.2
Q ss_pred CCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhc----CCceEEEEecccccCCC
Q 000174 720 EDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRD----GRVTLLVATSVAEEGLD 795 (1931)
Q Consensus 720 ~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~----G~~~vLVaTdVaeeGlD 795 (1931)
...+++|.+.+......+++.|... +. -...+.| +.+ .+.+++++|+. |+-.||++|+-+-||||
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~--l~--~~~l~qg-----~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvD 537 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELG--IP--AEIVIQS-----EKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGID 537 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhh--cC--CCEEEeC-----CCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccc
Confidence 3567888888888888888888651 11 3345555 322 34678999996 46789999999999999
Q ss_pred C--------CC--CCEEEEcCCCC
Q 000174 796 I--------RQ--CNVVIRFDLAK 809 (1931)
Q Consensus 796 i--------p~--~~lVI~fD~p~ 809 (1931)
+ |+ +.+||..-+|.
T Consensus 538 v~~~~~~p~~G~~Ls~ViI~kLPF 561 (636)
T TIGR03117 538 LTHKPVSPDKDNLLTDLIITCAPF 561 (636)
T ss_pred cCCccCCCCCCCcccEEEEEeCCC
Confidence 9 23 99999888774
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
Probab=90.13 E-value=0.58 Score=62.97 Aligned_cols=93 Identities=18% Similarity=0.155 Sum_probs=69.5
Q ss_pred hhcCCCCCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000174 296 KEKMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT 375 (1931)
Q Consensus 296 l~~~~~~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~ 375 (1931)
........|++-|++++.... .+++|.+..|||||.+.+.-+.+++... .....++|+|+.|+..+....+.+...+
T Consensus 189 f~~~e~~~L~~~Q~~av~~~~-~~~lV~agaGSGKT~vl~~r~ayLl~~~--~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 189 FSQVESSPLNPSQARAVVNGE-DSLLVLAGAGSGKTSVLVARAGWLLARG--QAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred HHhccCCCCCHHHHHHHhCCC-CCeEEEEeCCCCHHHHHHHHHHHHHHhC--CCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 333445789999999986432 6789999999999999998888777642 2234579999999999887777777654
Q ss_pred CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHH
Q 000174 376 GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNI 416 (1931)
Q Consensus 376 ~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~ 416 (1931)
+ ...|-|.|-..|...
T Consensus 266 g-------------------------~~~v~v~TFHSlal~ 281 (684)
T PRK11054 266 G-------------------------TEDITARTFHALALH 281 (684)
T ss_pred C-------------------------CCCcEEEeHHHHHHH
Confidence 3 025778999888743
|
|
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=89.76 E-value=0.81 Score=53.60 Aligned_cols=37 Identities=24% Similarity=0.291 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhc-------cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 306 PYQLDVLEQAKK-------KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 306 ~~Q~eai~~~l~-------~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
.+|..++..+++ -+.+.++|.|+|||-++++..+++.
T Consensus 39 ~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~ 82 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALN 82 (346)
T ss_pred cchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhc
Confidence 367777766654 3579999999999999998877653
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=89.67 E-value=1.9 Score=55.45 Aligned_cols=50 Identities=12% Similarity=0.191 Sum_probs=30.7
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR 372 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~ 372 (1931)
..+++++++|+|||........++.. ..++.+++++.. ..+..+....+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~----~~~~~~v~yv~~-~~f~~~~~~~l~ 191 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIES----NFSDLKVSYMSG-DEFARKAVDILQ 191 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHH----hCCCCeEEEEEH-HHHHHHHHHHHH
Confidence 34789999999999776555443332 123456666555 455555444443
|
|
| >PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA | Back alignment and domain information |
|---|
Probab=89.32 E-value=0.3 Score=64.31 Aligned_cols=155 Identities=10% Similarity=0.088 Sum_probs=95.9
Q ss_pred CCCcHHHHHHHHHHhc---cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHH-HHHHHc--
Q 000174 302 EQARPYQLDVLEQAKK---KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAE-VIREQT-- 375 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~---~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~-~l~~~~-- 375 (1931)
...+|||.+.+..+-. +.+.+...+-+|||.+.+..+-..+.. ....++++.||..++..+.+ .|...+
T Consensus 15 ~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~-----~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~ 89 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQ-----DPGPMLYVQPTDDAAKDFSKERLDPMIRA 89 (557)
T ss_pred CCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEe-----CCCCEEEEEEcHHHHHHHHHHHHHHHHHh
Confidence 4789999999999887 678999999999999777776655553 34679999999999998863 444332
Q ss_pred --CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCC-----CcHHHHH
Q 000174 376 --GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKK-----HPYSLVM 448 (1931)
Q Consensus 376 --~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~-----~~~~~im 448 (1931)
.++ ..+..... .........+.|.+..+.++....-. .+....+.+|++||.+..-.+ ++.....
T Consensus 90 sp~l~-~~~~~~~~-~~~~~t~~~k~f~gg~l~~~ga~S~~------~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~ 161 (557)
T PF05876_consen 90 SPVLR-RKLSPSKS-RDSGNTILYKRFPGGFLYLVGANSPS------NLRSRPARYLLLDEVDRYPDDVGGEGDPVELAE 161 (557)
T ss_pred CHHHH-HHhCchhh-cccCCchhheecCCCEEEEEeCCCCc------ccccCCcCEEEEechhhccccCccCCCHHHHHH
Confidence 111 11211000 00011223334456666665544322 244567899999999999532 3444443
Q ss_pred HHHHhhcCCCCCcEEEEEeecCCCC
Q 000174 449 SEFYHTTSKEKRPSVFGMTASPVNL 473 (1931)
Q Consensus 449 ~~~~~~~~~~~~p~iLgLTATP~~~ 473 (1931)
+..... ...+.+++..||...
T Consensus 162 ~R~~tf----~~~~K~~~~STPt~~ 182 (557)
T PF05876_consen 162 KRTKTF----GSNRKILRISTPTIE 182 (557)
T ss_pred HHHhhh----ccCcEEEEeCCCCCC
Confidence 332222 123456677888853
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities []. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=89.30 E-value=2.4 Score=46.01 Aligned_cols=39 Identities=28% Similarity=0.335 Sum_probs=28.7
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLV 364 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv 364 (1931)
++|.+++|+|||..+...+..... .+..++++.....+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~------~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT------KGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh------cCCEEEEEECCcchH
Confidence 678999999999988887765543 245678877765443
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.26 E-value=3.3 Score=51.64 Aligned_cols=42 Identities=21% Similarity=0.307 Sum_probs=30.8
Q ss_pred CCcHHHHHHHHHHhc--------cCEEEEeCCCchHHHHHHHHHHHHHHH
Q 000174 303 QARPYQLDVLEQAKK--------KNTIAFLETGAGKTLIAVLLIRSICND 344 (1931)
Q Consensus 303 ~~~~~Q~eai~~~l~--------~n~Il~~~TGsGKTliall~i~~~l~~ 344 (1931)
.-|+-|.+.+..++. .|+++.++||+|||.+.-..+.++...
T Consensus 20 ~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~ 69 (366)
T COG1474 20 PHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEES 69 (366)
T ss_pred cccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhh
Confidence 445666655554432 679999999999999998888776553
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=89.15 E-value=1.2 Score=60.50 Aligned_cols=97 Identities=13% Similarity=0.184 Sum_probs=75.4
Q ss_pred CCCHHHHHHH-HHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcC
Q 000174 701 KVTPKVQSLI-KILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDG 779 (1931)
Q Consensus 701 ~~s~Kv~~Li-~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G 779 (1931)
..+.|-.... -++... ..+.+++|.++++.-|...++.++.+-.-.++++..++| +++..+|.++++...+|
T Consensus 291 TGSGKT~va~~~il~~~--~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G-----~~~~~~r~~~~~~l~~g 363 (681)
T PRK10917 291 VGSGKTVVAALAALAAI--EAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTG-----SLKGKERREILEAIASG 363 (681)
T ss_pred CCCcHHHHHHHHHHHHH--HcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcC-----CCCHHHHHHHHHHHhCC
Confidence 4566765433 333332 246799999999999999888887652223689999999 99999999999999999
Q ss_pred CceEEEEec-ccccCCCCCCCCEEEE
Q 000174 780 RVTLLVATS-VAEEGLDIRQCNVVIR 804 (1931)
Q Consensus 780 ~~~vLVaTd-VaeeGlDip~~~lVI~ 804 (1931)
+++|+|+|. .+...+.+.++.+||.
T Consensus 364 ~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 364 EADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred CCCEEEchHHHhcccchhcccceEEE
Confidence 999999995 4666788888888874
|
|
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
Probab=89.11 E-value=1.2 Score=61.18 Aligned_cols=90 Identities=13% Similarity=0.055 Sum_probs=68.1
Q ss_pred CCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEE
Q 000174 302 EQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGH 381 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~ 381 (1931)
..|++-|++++... ...++|.|..|||||.+...-|.+++... .-+..++|+|+-|+..+....+.+.+.++..
T Consensus 3 ~~Ln~~Q~~av~~~-~g~~lV~AgaGSGKT~~L~~Ria~Li~~~--~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~~--- 76 (715)
T TIGR01075 3 DGLNDKQREAVAAP-PGNLLVLAGAGSGKTRVLTHRIAWLLSVE--NASPHSIMAVTFTNKAAAEMRHRIGALLGTS--- 76 (715)
T ss_pred cccCHHHHHHHcCC-CCCEEEEecCCCCHHHHHHHHHHHHHHcC--CCCHHHeEeeeccHHHHHHHHHHHHHHhccc---
Confidence 35899999998652 48899999999999999888888877632 2234579999999999888888887754310
Q ss_pred EeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHH
Q 000174 382 YCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNIL 417 (1931)
Q Consensus 382 ~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L 417 (1931)
...+.|+|...+...+
T Consensus 77 --------------------~~~~~i~TfHs~~~~i 92 (715)
T TIGR01075 77 --------------------ARGMWIGTFHGLAHRL 92 (715)
T ss_pred --------------------ccCcEEEcHHHHHHHH
Confidence 1246789998877543
|
Designed to identify uvrD members of the uvrD/rep subfamily. |
| >TIGR01074 rep ATP-dependent DNA helicase Rep | Back alignment and domain information |
|---|
Probab=88.86 E-value=1.6 Score=59.59 Aligned_cols=89 Identities=15% Similarity=0.099 Sum_probs=67.7
Q ss_pred CcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEe
Q 000174 304 ARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYC 383 (1931)
Q Consensus 304 ~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~ 383 (1931)
|++-|++++.. ...+++|.+..|||||.+.+.-|.+++... ......+++|+.|+.-+.+..+.+.+.++..
T Consensus 2 Ln~~Q~~av~~-~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~--~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~----- 73 (664)
T TIGR01074 2 LNPQQQEAVEY-VTGPCLVLAGAGSGKTRVITNKIAYLIQNC--GYKARNIAAVTFTNKAAREMKERVAKTLGKG----- 73 (664)
T ss_pred CCHHHHHHHhC-CCCCEEEEecCCCCHHHHHHHHHHHHHHhc--CCCHHHeEEEeccHHHHHHHHHHHHHHhCcc-----
Confidence 78899998864 348899999999999999999888887531 1234679999999988888888777655311
Q ss_pred CCCcccccchHHHHhhcCCccEEEEcHHHHHHHH
Q 000174 384 GEMGQDFWDAQRWQREFDTKQVLVMTAQILLNIL 417 (1931)
Q Consensus 384 G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L 417 (1931)
...+|.|.|-..|...+
T Consensus 74 -----------------~~~~v~v~TfHs~a~~i 90 (664)
T TIGR01074 74 -----------------EARGLTISTFHTLGLDI 90 (664)
T ss_pred -----------------ccCCeEEEeHHHHHHHH
Confidence 12357899999887654
|
Designed to identify rep members of the uvrD/rep subfamily. |
| >PRK11773 uvrD DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
Probab=88.85 E-value=1.4 Score=60.47 Aligned_cols=90 Identities=16% Similarity=0.071 Sum_probs=68.6
Q ss_pred CCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEE
Q 000174 302 EQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGH 381 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~ 381 (1931)
..|++-|++++... ...++|.|..|||||.+...-|.+++... .-+...+|+|+-|+..+....+.+.+.++..
T Consensus 8 ~~Ln~~Q~~av~~~-~g~~lV~AgaGSGKT~vl~~Ria~Li~~~--~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~--- 81 (721)
T PRK11773 8 DSLNDKQREAVAAP-LGNMLVLAGAGSGKTRVLVHRIAWLMQVE--NASPYSIMAVTFTNKAAAEMRHRIEQLLGTS--- 81 (721)
T ss_pred HhcCHHHHHHHhCC-CCCEEEEecCCCCHHHHHHHHHHHHHHcC--CCChhHeEeeeccHHHHHHHHHHHHHHhccC---
Confidence 46999999998743 47899999999999999988888877532 2234579999999999988888887754310
Q ss_pred EeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHH
Q 000174 382 YCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNIL 417 (1931)
Q Consensus 382 ~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L 417 (1931)
...+.|+|...+...+
T Consensus 82 --------------------~~~~~i~TfHs~~~~i 97 (721)
T PRK11773 82 --------------------QGGMWVGTFHGLAHRL 97 (721)
T ss_pred --------------------CCCCEEEcHHHHHHHH
Confidence 1246789998887644
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.79 E-value=1.4 Score=52.59 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=29.8
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQ 366 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q 366 (1931)
.++++.+++|+|||..+..++.+++.. .+..|+++. ...|..+
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~-----~g~~v~y~~-~~~l~~~ 160 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRK-----KGVPVLYFP-FVEGFGD 160 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhh-----cCceEEEEE-HHHHHHH
Confidence 569999999999999888877766542 134466555 3444443
|
|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=88.75 E-value=1.3 Score=56.76 Aligned_cols=37 Identities=11% Similarity=0.234 Sum_probs=26.9
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP 359 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP 359 (1931)
.+++++++|+|||..+.....++... .++.+++++..
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~----~~~~~v~yi~~ 168 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQN----EPDLRVMYITS 168 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHh----CCCCeEEEEEH
Confidence 58999999999999887776665442 23456777654
|
|
| >PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit | Back alignment and domain information |
|---|
Probab=88.70 E-value=0.86 Score=53.12 Aligned_cols=89 Identities=10% Similarity=0.041 Sum_probs=57.1
Q ss_pred cCCCcEEEEEeCChhHHHHHHHHHHHHc--CCcEEEEeCCC-cccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccc
Q 000174 348 QNKKMLAVFLVPKVPLVYQQAEVIREQT--GYVVGHYCGEM-GQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKM 424 (1931)
Q Consensus 348 ~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~--~l~v~~~~G~~-~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l 424 (1931)
.++.+.+|||+..--=|....+.++.+- +..|.-+..-. .... +...-.....+|.|+||++|..+++.+.+.+
T Consensus 123 ~~gsP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~e---qv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l 199 (252)
T PF14617_consen 123 EKGSPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEE---QVKLLKKTRVHIAVGTPGRLSKLLENGALSL 199 (252)
T ss_pred CCCCCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHH---HHHHHHhCCceEEEeChHHHHHHHHcCCCCc
Confidence 3455778888887544555555555542 13333333222 2211 1111111378999999999999999999999
Q ss_pred cceeEEEEeCCCccc
Q 000174 425 EAINLLILDECHHAV 439 (1931)
Q Consensus 425 ~~i~lLV~DEaH~~~ 439 (1931)
+.+.+||||--|.=.
T Consensus 200 ~~l~~ivlD~s~~D~ 214 (252)
T PF14617_consen 200 SNLKRIVLDWSYLDQ 214 (252)
T ss_pred ccCeEEEEcCCcccc
Confidence 999999999877543
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=88.68 E-value=1.7 Score=53.95 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHhc--c--CEEEEeCCCchHHHHHHHHHHHHH
Q 000174 305 RPYQLDVLEQAKK--K--NTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 305 ~~~Q~eai~~~l~--~--n~Il~~~TGsGKTliall~i~~~l 342 (1931)
++...+.+..+.. + .+++.+|+|+|||..+...+..+.
T Consensus 20 ~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 20 QDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred CHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444445555544 3 689999999999999888776654
|
|
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=88.63 E-value=0.72 Score=51.44 Aligned_cols=41 Identities=24% Similarity=0.347 Sum_probs=29.4
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVY 365 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~ 365 (1931)
.|+++.+++|+|||..+..++.+++.. +..++|+ +...|+.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~------g~~v~f~-~~~~L~~ 88 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRK------GYSVLFI-TASDLLD 88 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT------T--EEEE-EHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccC------CcceeEe-ecCceec
Confidence 789999999999999999988887762 4456665 4445544
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=88.57 E-value=1.3 Score=56.68 Aligned_cols=40 Identities=13% Similarity=0.139 Sum_probs=27.3
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVY 365 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~ 365 (1931)
.+++++++|+|||..+.....++... +.+++++.. ..+..
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~------~~~v~yi~~-~~f~~ 182 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRES------GGKILYVRS-ELFTE 182 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHc------CCCEEEeeH-HHHHH
Confidence 48999999999998888776655431 345666654 33433
|
|
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=88.52 E-value=1.3 Score=53.87 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.3
Q ss_pred cCEEEEeCCCchHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~ 339 (1931)
.+.|+++|.|+|||-++-++..
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~ 70 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAG 70 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHH
Confidence 6789999999999998887754
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=88.33 E-value=1.3 Score=52.73 Aligned_cols=97 Identities=19% Similarity=0.231 Sum_probs=53.1
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhc-CCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQ-NKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRW 396 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~-~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w 396 (1931)
.|.+|+++||-|||.+.--....+-...... ..-+.+++-+|..+=..-.+..|-..++.+... .... ..
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~---~~~~-----~~- 132 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP---RDRV-----AK- 132 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC---CCCH-----HH-
Confidence 5899999999999986543332221111001 112345666777666666666666655544221 1100 00
Q ss_pred HhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 397 QREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 397 ~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
.+.+.+ .. +.--++.+|||||.|+++.
T Consensus 133 -----------~~~~~~-~l-----lr~~~vrmLIIDE~H~lLa 159 (302)
T PF05621_consen 133 -----------LEQQVL-RL-----LRRLGVRMLIIDEFHNLLA 159 (302)
T ss_pred -----------HHHHHH-HH-----HHHcCCcEEEeechHHHhc
Confidence 011111 22 3345788999999999876
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=88.32 E-value=2.6 Score=50.83 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=20.6
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
++++.+++|+|||.++...+..+..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~ 84 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHR 84 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 7899999999999999777665543
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=88.24 E-value=1.9 Score=57.32 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=19.8
Q ss_pred EEEEeCCCchHHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l 342 (1931)
+|++++.|+|||.++..+.+.+.
T Consensus 41 yLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 41 YLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 58999999999999888877654
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=88.12 E-value=3.4 Score=53.03 Aligned_cols=118 Identities=16% Similarity=0.154 Sum_probs=59.9
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe-CC-hhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV-PK-VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQR 395 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv-PT-~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~ 395 (1931)
+.++++++||+|||..+..++..+... +.+.++.++. .+ +.-+..|.......+++.+..
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~----~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~-------------- 412 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQ----HAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHE-------------- 412 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHh----cCCCceEEEecccccccHHHHHHHhhcccCceeEe--------------
Confidence 456788999999998877766554432 1223344443 22 322222222222222222211
Q ss_pred HHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 396 WQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 396 w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
+.++..+...+.. +.+.++||||.+=+...+......+..+.... ....+|.+++++.
T Consensus 413 -----------a~d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~---~~a~lLVLpAtss 470 (559)
T PRK12727 413 -----------ADSAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLRAAR---QVTSLLVLPANAH 470 (559)
T ss_pred -----------cCcHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHHHhh---cCCcEEEEECCCC
Confidence 1234445555543 45689999999976643322222333332211 1245778888764
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=87.98 E-value=1.3 Score=56.41 Aligned_cols=22 Identities=41% Similarity=0.532 Sum_probs=19.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~ 341 (1931)
.|+++|.|+|||-++..+++.+
T Consensus 43 ~Lf~GP~GtGKTTlAriLAk~L 64 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILAKRL 64 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 6999999999999998887765
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=87.61 E-value=2.1 Score=52.53 Aligned_cols=41 Identities=20% Similarity=0.240 Sum_probs=33.9
Q ss_pred CCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 303 QARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 303 ~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
.++|+|...+..+.. +-.++.++.|.|||..+...+..++-
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC 48 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLC 48 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcC
Confidence 468999999999886 23689999999999988888776654
|
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=87.43 E-value=4 Score=51.84 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=20.7
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
.+++|++++|+|||...-..+.++.
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l~ 80 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEELE 80 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999998777766543
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=87.42 E-value=4.8 Score=51.30 Aligned_cols=24 Identities=29% Similarity=0.235 Sum_probs=19.6
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l 342 (1931)
.+++++++|+|||.++..++..+.
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~ 120 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFK 120 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 468899999999998888776543
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=87.25 E-value=1.4 Score=57.74 Aligned_cols=48 Identities=13% Similarity=0.052 Sum_probs=29.9
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVI 371 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l 371 (1931)
.++|++++|+|||.....+..+.... ..+.+++++.- ..++.+....+
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~----~~g~~V~Yita-eef~~el~~al 363 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRL----YPGTRVRYVSS-EEFTNEFINSI 363 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHh----CCCCeEEEeeH-HHHHHHHHHHH
Confidence 38999999999998877766554431 22345555543 45555444333
|
|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=87.21 E-value=1.6 Score=50.58 Aligned_cols=105 Identities=13% Similarity=0.240 Sum_probs=54.6
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhh
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQRE 399 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~ 399 (1931)
++|++++|+|||........++... .++.+|+++... +........++.
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~~----~~~~~v~y~~~~-~f~~~~~~~~~~-------------------------- 85 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQKQ----HPGKRVVYLSAE-EFIREFADALRD-------------------------- 85 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHH----CTTS-EEEEEHH-HHHHHHHHHHHT--------------------------
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhc----cccccceeecHH-HHHHHHHHHHHc--------------------------
Confidence 7899999999998544444333332 234556666542 333322222221
Q ss_pred cCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeec-CC
Q 000174 400 FDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTAS-PV 471 (1931)
Q Consensus 400 ~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTAT-P~ 471 (1931)
.....+.+ .+...++||||..|.+.+...+...+-.++....... .+++..|.. |.
T Consensus 86 --------~~~~~~~~-------~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~-k~li~ts~~~P~ 142 (219)
T PF00308_consen 86 --------GEIEEFKD-------RLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESG-KQLILTSDRPPS 142 (219)
T ss_dssp --------TSHHHHHH-------HHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTT-SEEEEEESS-TT
T ss_pred --------ccchhhhh-------hhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhC-CeEEEEeCCCCc
Confidence 01122222 2456899999999999875333444434444332222 344444434 44
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=87.16 E-value=2.6 Score=49.01 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=19.8
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~ 341 (1931)
+.+++++++|+|||..+.....+.
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 569999999999998877766544
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=87.12 E-value=7.8 Score=47.99 Aligned_cols=120 Identities=13% Similarity=0.113 Sum_probs=70.0
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC-hhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK-VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRW 396 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT-~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w 396 (1931)
+.+.+++|||.|||-.-.-++..+... .+.++..||-..| |.=+..|.+...+.++++
T Consensus 204 ~vi~LVGPTGVGKTTTlAKLAar~~~~---~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp------------------ 262 (407)
T COG1419 204 RVIALVGPTGVGKTTTLAKLAARYVML---KKKKKVAIITTDTYRIGAVEQLKTYADIMGVP------------------ 262 (407)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhh---ccCcceEEEEeccchhhHHHHHHHHHHHhCCc------------------
Confidence 457899999999987666555444411 2233445555544 111222222222333333
Q ss_pred HhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 397 QREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 397 ~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
-.+|-+|.-|...+.. +.+.++|.+|=+=+--.+-.+...|+.+..... ..-.-|.||||--
T Consensus 263 -------~~vv~~~~el~~ai~~----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~--~i~~~Lvlsat~K 324 (407)
T COG1419 263 -------LEVVYSPKELAEAIEA----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSH--SIEVYLVLSATTK 324 (407)
T ss_pred -------eEEecCHHHHHHHHHH----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccc--cceEEEEEecCcc
Confidence 3456677777766643 777899999977665544455666777776542 2245688899843
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=87.11 E-value=5.1 Score=47.97 Aligned_cols=116 Identities=16% Similarity=0.080 Sum_probs=59.7
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH-HcCCcEEEEeCCCcccccchHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE-QTGYVVGHYCGEMGQDFWDAQRW 396 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~-~~~l~v~~~~G~~~~~~~~~~~w 396 (1931)
.-++|.+++|+|||..++..+.+.+.. .+.+++++.-.- -..+....+.. ..+..+................|
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~-----~g~~vl~iS~E~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQ-----HGVRVGTISLEE-PVVRTARRLLGQYAGKRLHLPDTVFIYTLEEFDAA 104 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHh-----cCceEEEEEccc-CHHHHHHHHHHHHhCCCcccCCccccccHHHHHHH
Confidence 457899999999998888776665542 245688887532 23444444433 23443322111000000011222
Q ss_pred HhhcC-CccEEEE------cHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 397 QREFD-TKQVLVM------TAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 397 ~~~~~-~~~IlV~------Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
...+. ...+.+- |...+...+..- ..-..+++||||..+.+..
T Consensus 105 ~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~-~~~~~~~~vvID~l~~l~~ 154 (271)
T cd01122 105 FDEFEGTGRLFMYDSFGEYSMDSVLEKVRYM-AVSHGIQHIIIDNLSIMVS 154 (271)
T ss_pred HHHhcCCCcEEEEcCCCccCHHHHHHHHHHH-HhcCCceEEEECCHHHHhc
Confidence 22222 2222221 455555544421 1223688999999888764
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.55 E-value=0.54 Score=60.36 Aligned_cols=60 Identities=23% Similarity=0.434 Sum_probs=52.1
Q ss_pred HHhhcCCceEEEEecccccCCCCCCCCEE--------EEcCCCCCHHHHHHhhccCCCCCCc----EEEEEe
Q 000174 774 AKFRDGRVTLLVATSVAEEGLDIRQCNVV--------IRFDLAKTVLAYIQSRGRARKPGSD----YILMIE 833 (1931)
Q Consensus 774 ~~Fr~G~~~vLVaTdVaeeGlDip~~~lV--------I~fD~p~s~~~yiQr~GRa~R~Gs~----~ivlv~ 833 (1931)
++|-+|+-.|-|-+.+++-||-++.-..| |-..+||+...-||..||++|.++- |++++.
T Consensus 851 qrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIs 922 (1300)
T KOG1513|consen 851 QRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLIS 922 (1300)
T ss_pred hhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEeh
Confidence 57999999999999999999999886655 4578999999999999999998765 877765
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=86.54 E-value=7.7 Score=46.21 Aligned_cols=118 Identities=16% Similarity=0.150 Sum_probs=64.7
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC-C--hhHHHHHHHHHHHHcCCcEEEEeCCCcccccchH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP-K--VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQ 394 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP-T--~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~ 394 (1931)
..+.+.+++|+|||..+..++..+.. .+.++.++.- + ...+.||...... .++.+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~------~~~~v~~i~~D~~ri~~~~ql~~~~~~-~~~~~~-------------- 134 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHG------KKKTVGFITTDHSRIGTVQQLQDYVKT-IGFEVI-------------- 134 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHH------cCCeEEEEecCCCCHHHHHHHHHHhhh-cCceEE--------------
Confidence 56788999999999887776655432 1234544443 2 2566777654432 232222
Q ss_pred HHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecC
Q 000174 395 RWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASP 470 (1931)
Q Consensus 395 ~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP 470 (1931)
...++..+.+.+..- -...+.++||+|-+=+.-.+...-..+..+...... .-.+|-++||-
T Consensus 135 -----------~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~--~~~~LVl~a~~ 196 (270)
T PRK06731 135 -----------AVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEP--DYICLTLSASM 196 (270)
T ss_pred -----------ecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCC--CeEEEEEcCcc
Confidence 113455555544320 112468999999987664432333334444433211 13466788874
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=86.48 E-value=3.3 Score=53.33 Aligned_cols=103 Identities=13% Similarity=0.109 Sum_probs=54.4
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHH--HHHHHHHHHcCCcEEEEeCCCcccccchHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVY--QQAEVIREQTGYVVGHYCGEMGQDFWDAQR 395 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~--Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~ 395 (1931)
+..|++++.|+|||-++.++++.+.-.. + |+..-|. ..+..+.......+..+.+.... ..+.
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk~LnC~~---~---------~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~---~vdd 100 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISLCLNCSN---G---------PTSDPCGTCHNCISIKNSNHPDVIEIDAASNT---SVDD 100 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHHHHcCcC---C---------CCCCCccccHHHHHHhccCCCCEEEEecccCC---CHHH
Confidence 3589999999999998888776543211 0 1111111 12334444344556655553221 1111
Q ss_pred HHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHH
Q 000174 396 WQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEF 451 (1931)
Q Consensus 396 w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~ 451 (1931)
.+. +.+..... -...+.+++||||+|.+.. +.++..++.+
T Consensus 101 IR~--------------Iie~~~~~-P~~~~~KVvIIDEah~Ls~-~A~NaLLK~L 140 (491)
T PRK14964 101 IKV--------------ILENSCYL-PISSKFKVYIIDEVHMLSN-SAFNALLKTL 140 (491)
T ss_pred HHH--------------HHHHHHhc-cccCCceEEEEeChHhCCH-HHHHHHHHHH
Confidence 111 11111111 1235789999999999876 3566555443
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=86.45 E-value=2.8 Score=51.59 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=21.0
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
.++|+++|.|+|||..+...+.++.
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999998888776653
|
|
| >PRK14712 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=86.31 E-value=3.8 Score=59.29 Aligned_cols=61 Identities=21% Similarity=0.134 Sum_probs=43.0
Q ss_pred CCCcHHHHHHHHHHhc---cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHH
Q 000174 302 EQARPYQLDVLEQAKK---KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLV 364 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~---~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv 364 (1931)
..+++-|++++..++. +-++|.+..|+|||.+.-..+..+ ..+. ...+..++.++||---+
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~-~~l~-e~~g~~V~glAPTgkAa 897 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAV-NMLP-ESERPRVVGLGPTHRAV 897 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHH-HHHh-hccCceEEEEechHHHH
Confidence 4799999999999986 568999999999997754433221 1111 12346799999995443
|
|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=85.89 E-value=5.8 Score=43.52 Aligned_cols=121 Identities=11% Similarity=0.098 Sum_probs=58.9
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHh
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQR 398 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~ 398 (1931)
..|+.++.|+||+..+...+..++..... .. -+..-.- ...+.......+..+...........
T Consensus 21 a~L~~G~~g~gk~~~a~~~a~~ll~~~~~---~~----~c~~c~~----c~~~~~~~~~d~~~~~~~~~~~~i~i----- 84 (162)
T PF13177_consen 21 ALLFHGPSGSGKKTLALAFARALLCSNPN---ED----PCGECRS----CRRIEEGNHPDFIIIKPDKKKKSIKI----- 84 (162)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-TT-C---TT------SSSHH----HHHHHTT-CTTEEEEETTTSSSSBSH-----
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCC---CC----CCCCCHH----HHHHHhccCcceEEEecccccchhhH-----
Confidence 36999999999999988888876653211 11 2222222 22333333344455443322111111
Q ss_pred hcCCccEEEEcHHHHHHHHhcccc--cccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 399 EFDTKQVLVMTAQILLNILRHSII--KMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 399 ~~~~~~IlV~Tpq~L~d~L~~~~l--~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
+.+.+....-.. .....+++||||||.|... ..+.+++ .+..-+ ....++++|-.|.
T Consensus 85 ------------~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~-a~NaLLK-~LEepp--~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 85 ------------DQIREIIEFLSLSPSEGKYKVIIIDEADKLTEE-AQNALLK-TLEEPP--ENTYFILITNNPS 143 (162)
T ss_dssp ------------HHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HH-HHHHHHH-HHHSTT--TTEEEEEEES-GG
T ss_pred ------------HHHHHHHHHHHHHHhcCCceEEEeehHhhhhHH-HHHHHHH-HhcCCC--CCEEEEEEECChH
Confidence 222222222111 1256899999999999863 4444444 333222 2245555554444
|
... |
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Probab=85.74 E-value=3.3 Score=50.33 Aligned_cols=26 Identities=15% Similarity=0.344 Sum_probs=22.7
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
+++++.+++|+|||..+..++.+++.
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~ 182 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAK 182 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999988887764
|
|
| >cd00984 DnaB_C DnaB helicase C terminal domain | Back alignment and domain information |
|---|
Probab=85.55 E-value=2.4 Score=49.76 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=28.4
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK 360 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT 360 (1931)
-++|++++|+|||..++-.+.+.+.. .+.+++++...
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~~~-----~g~~vly~s~E 51 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAKK-----QGKPVLFFSLE 51 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCceEEEeCC
Confidence 46899999999998888877776653 14568888853
|
The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. |
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=85.55 E-value=1.5 Score=53.64 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=40.0
Q ss_pred CcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhH
Q 000174 304 ARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPL 363 (1931)
Q Consensus 304 ~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~L 363 (1931)
+.+.|.+.+..+.. .+++++++||||||-..-.++..+.. ..+..++++|-.+.+|
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~----~~~~~rivtIEd~~El 190 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVI----QDPTERVFIIEDTGEI 190 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhh----cCCCceEEEEcCCCcc
Confidence 45778888888766 89999999999999555444443321 1234568888888776
|
|
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=85.49 E-value=1.5 Score=53.31 Aligned_cols=57 Identities=25% Similarity=0.203 Sum_probs=40.3
Q ss_pred CcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHH
Q 000174 304 ARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLV 364 (1931)
Q Consensus 304 ~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv 364 (1931)
+++.|.+.+..+.. .|+|++++||||||-..-.++..+.. ..+..+++.+=.+.||.
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~----~~~~~rivtiEd~~El~ 187 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVA----SAPEDRLVILEDTAEIQ 187 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhc----CCCCceEEEecCCcccc
Confidence 56788888888877 89999999999998655444433322 12345677777777763
|
|
| >PF14954 LIX1: Limb expression 1 | Back alignment and domain information |
|---|
Probab=85.32 E-value=1.9 Score=47.28 Aligned_cols=70 Identities=16% Similarity=0.071 Sum_probs=46.6
Q ss_pred ccchHHHHHHHHHHc---CCCCCc-ceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHH
Q 000174 1851 QTFTRQTLNDICLRR---NWPMPL-YRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLE 1924 (1931)
Q Consensus 1851 ~~n~~~~L~e~~~~~---~~~~p~-y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~ 1924 (1931)
.+|-|..|||+=|.+ +-..|. -.++.+..|+..+-|+|=|++-+ +.+.|.=..=+||-+|+++||+.||.
T Consensus 20 ~vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs~ps~~ppyVcyVTLPG----GSCFGnfq~C~tkAEARR~AAKiALm 93 (252)
T PF14954_consen 20 DVNVVEALQEFWQMKQSRGADLKSEALVVYESVPSPSPPYVCYVTLPG----GSCFGNFQNCPTKAEARRSAAKIALM 93 (252)
T ss_pred cchHHHHHHHHHHHHHhccccCCCCCeeeeeccCCCCCCeEEEEeCCC----CCccCccccCCcHHHHHhhhHHHHHH
Confidence 478999999987544 333332 22344667877788999898842 22222212227899999999999985
|
|
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=85.29 E-value=1.3 Score=50.54 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=18.2
Q ss_pred CEEEEeCCCchHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~ 340 (1931)
++|+++|.|+|||-.|-+.+.+
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e 73 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANE 73 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCccchhHHHHHHHhc
Confidence 5899999999999877776543
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=85.19 E-value=3.9 Score=49.34 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=20.3
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l 342 (1931)
++++.+++|+|||.++-..+..+.
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~ 84 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILY 84 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 479999999999999998876543
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=85.17 E-value=2.8 Score=55.10 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=20.1
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l 342 (1931)
-+|++++.|+|||.++.++++.+.
T Consensus 39 AyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 359999999999999988877653
|
|
| >PHA03333 putative ATPase subunit of terminase; Provisional | Back alignment and domain information |
|---|
Probab=84.90 E-value=12 Score=49.44 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=52.7
Q ss_pred CCCCCCcHHHHHHHHHHhc----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHH
Q 000174 299 MPEEQARPYQLDVLEQAKK----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQ 374 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~ 374 (1931)
....-|.|+=.+-|..+.. +-.++..|=|.|||.+..+.+..++.. .+.++++.+|...-+.+..+.++..
T Consensus 165 ~np~~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f-----~Gi~IlvTAH~~~ts~evF~rv~~~ 239 (752)
T PHA03333 165 FNPEAPSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF-----LEIDIVVQAQRKTMCLTLYNRVETV 239 (752)
T ss_pred cCcCCCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh-----cCCeEEEECCChhhHHHHHHHHHHH
Confidence 4445566766666666654 557888999999998887766655532 2467999999998888888777765
Q ss_pred c
Q 000174 375 T 375 (1931)
Q Consensus 375 ~ 375 (1931)
+
T Consensus 240 l 240 (752)
T PHA03333 240 V 240 (752)
T ss_pred H
Confidence 4
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=84.50 E-value=2.9 Score=56.40 Aligned_cols=97 Identities=15% Similarity=0.222 Sum_probs=74.3
Q ss_pred CCCHHHHHH-HHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcC
Q 000174 701 KVTPKVQSL-IKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDG 779 (1931)
Q Consensus 701 ~~s~Kv~~L-i~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G 779 (1931)
..+.|-... +-++... ..+.+++|-++++.-|..+++.++++-.-.++++..++| +++..+|.++++...+|
T Consensus 265 TGSGKT~va~l~il~~~--~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg-----~~~~~~r~~~~~~i~~g 337 (630)
T TIGR00643 265 VGSGKTLVAALAMLAAI--EAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTG-----SLKGKRRKELLETIASG 337 (630)
T ss_pred CCCcHHHHHHHHHHHHH--HcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEec-----CCCHHHHHHHHHHHhCC
Confidence 456676543 3333333 246789999999999999988887642213689999999 88999999999999999
Q ss_pred CceEEEEec-ccccCCCCCCCCEEEE
Q 000174 780 RVTLLVATS-VAEEGLDIRQCNVVIR 804 (1931)
Q Consensus 780 ~~~vLVaTd-VaeeGlDip~~~lVI~ 804 (1931)
+.+|+|+|. .+.+.+.+.++.+||.
T Consensus 338 ~~~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 338 QIHLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred CCCEEEecHHHHhccccccccceEEE
Confidence 999999995 4556778888888773
|
|
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=84.31 E-value=4.6 Score=48.65 Aligned_cols=25 Identities=24% Similarity=0.098 Sum_probs=19.6
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
.++++++||+|||.....++..+..
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999888777665543
|
|
| >PRK12678 transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Probab=84.23 E-value=3.9 Score=52.53 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=20.3
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
+.++|.++.|+|||.+...++..+.
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~ 441 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAIT 441 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHh
Confidence 7889999999999998777555443
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=84.21 E-value=2.9 Score=54.90 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.2
Q ss_pred EEEEeCCCchHHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l 342 (1931)
.|++++.|+|||.++..+++.+.
T Consensus 41 ~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 41 YLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 58999999999999998887664
|
|
| >PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) | Back alignment and domain information |
|---|
Probab=84.20 E-value=2.9 Score=54.43 Aligned_cols=68 Identities=9% Similarity=-0.046 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhc----------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000174 306 PYQLDVLEQAKK----------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT 375 (1931)
Q Consensus 306 ~~Q~eai~~~l~----------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~ 375 (1931)
|+|+-++..++. +.+++..+=|-|||.....++...+--. ...+..++++++++.-+....+.++...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~--g~~~~~i~~~A~~~~QA~~~f~~~~~~i 78 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD--GEPGAEIYCAANTRDQAKIVFDEAKKMI 78 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC--CccCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 678888887763 3578899999999976666554433211 2235679999999998888888887754
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. |
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=84.13 E-value=2 Score=58.10 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=19.7
Q ss_pred EEEEeCCCchHHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l 342 (1931)
.|++++.|+|||.++.++++.+.
T Consensus 41 yLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred EEEECCCCCCHHHHHHHHHHhcc
Confidence 48999999999999988877653
|
|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=83.87 E-value=7.1 Score=58.98 Aligned_cols=113 Identities=16% Similarity=0.156 Sum_probs=68.3
Q ss_pred CCCcHHHHHHHHHHhc---cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCc
Q 000174 302 EQARPYQLDVLEQAKK---KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYV 378 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~---~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~ 378 (1931)
..+.+-|++++..++. +=.||.+..|+|||.+.-.++ .+++. .+.+|++++||---+. ++.+-++..
T Consensus 428 ~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~-~~~~~-----~G~~V~~lAPTgrAA~----~L~e~~g~~ 497 (1960)
T TIGR02760 428 FALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLL-HLASE-----QGYEIQIITAGSLSAQ----ELRQKIPRL 497 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHH-HHHHh-----cCCeEEEEeCCHHHHH----HHHHHhcch
Confidence 4689999999999887 347899999999997655443 33332 3567999999965444 444433322
Q ss_pred EEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 379 VGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 379 v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
... ...|...+... .-..|.+.|+ +....+..-++||||||-.+..
T Consensus 498 A~T-----------i~~~l~~l~~~-~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~~ 543 (1960)
T TIGR02760 498 AST-----------FITWVKNLFND-DQDHTVQGLL----DKSSPFSNKDIFVVDEANKLSN 543 (1960)
T ss_pred hhh-----------HHHHHHhhccc-ccchhHHHhh----cccCCCCCCCEEEEECCCCCCH
Confidence 111 11232221111 1223444443 2223456678999999987744
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=83.87 E-value=3.7 Score=57.15 Aligned_cols=97 Identities=12% Similarity=0.128 Sum_probs=72.0
Q ss_pred CCCHHHHHHHH-HHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcC
Q 000174 701 KVTPKVQSLIK-ILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDG 779 (1931)
Q Consensus 701 ~~s~Kv~~Li~-lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G 779 (1931)
..+.|-...+. ++... ..+.+++|.++|+.-|...++.++..-.-.++++..++| ..+..++.++++.+++|
T Consensus 481 TGsGKT~val~a~l~al--~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg-----~~~~~e~~~~~~~l~~g 553 (926)
T TIGR00580 481 VGFGKTEVAMRAAFKAV--LDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSR-----FRSAKEQNEILKELASG 553 (926)
T ss_pred CCccHHHHHHHHHHHHH--HhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEec-----cccHHHHHHHHHHHHcC
Confidence 44666654332 22222 235789999999999999998887642213567888998 78888999999999999
Q ss_pred CceEEEEec-ccccCCCCCCCCEEEE
Q 000174 780 RVTLLVATS-VAEEGLDIRQCNVVIR 804 (1931)
Q Consensus 780 ~~~vLVaTd-VaeeGlDip~~~lVI~ 804 (1931)
+++|+|+|. .+...+.+.++.+||.
T Consensus 554 ~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 554 KIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred CceEEEchHHHhhCCCCcccCCEEEe
Confidence 999999995 5556677777777764
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=83.72 E-value=3.5 Score=56.67 Aligned_cols=23 Identities=35% Similarity=0.299 Sum_probs=20.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l 342 (1931)
+|++++.|+|||.++.++.+.+.
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999887664
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=83.71 E-value=7 Score=52.73 Aligned_cols=115 Identities=16% Similarity=0.083 Sum_probs=62.0
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC-C-h-hHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP-K-V-PLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRW 396 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP-T-~-~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w 396 (1931)
+.++++||+|||-....+...+... . ++++|.++.- | + .-+.|+ ..+.+..++.+
T Consensus 188 i~lVGpnGvGKTTTiaKLA~~~~~~---~-G~kkV~lit~Dt~RigA~eQL-~~~a~~~gvpv----------------- 245 (767)
T PRK14723 188 LALVGPTGVGKTTTTAKLAARCVAR---E-GADQLALLTTDSFRIGALEQL-RIYGRILGVPV----------------- 245 (767)
T ss_pred EEEECCCCCcHHHHHHHHHhhHHHH---c-CCCeEEEecCcccchHHHHHH-HHHHHhCCCCc-----------------
Confidence 5689999999988777766544321 1 2223444332 2 1 122322 22223233221
Q ss_pred HhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecC
Q 000174 397 QREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASP 470 (1931)
Q Consensus 397 ~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP 470 (1931)
.++.+|..+.+.+.. +.+.++|+||=+=+.-.+......+..+... ....-.+|.|+||-
T Consensus 246 --------~~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~--~~p~e~~LVLsAt~ 305 (767)
T PRK14723 246 --------HAVKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGV--GRPVRRLLLLNAAS 305 (767)
T ss_pred --------cccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhcc--CCCCeEEEEECCCC
Confidence 234477777777764 4567899999887765432333333333321 12234578888884
|
|
| >COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.69 E-value=3.9 Score=45.41 Aligned_cols=90 Identities=16% Similarity=0.218 Sum_probs=55.2
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhh
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQRE 399 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~ 399 (1931)
.+++++|.||||..-+..+.+... .+.++++..|... .. +.+..+.+-.+.
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~------~g~~v~vfkp~iD----------~R--~~~~~V~Sr~G~----------- 57 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKE------AGMKVLVFKPAID----------TR--YGVGKVSSRIGL----------- 57 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHH------cCCeEEEEecccc----------cc--cccceeeeccCC-----------
Confidence 478999999999966665554433 3567898888531 11 122222222111
Q ss_pred cCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 400 FDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 400 ~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
...-++|-...-+.+.+....-... ++.|.+|||+-+..
T Consensus 58 -~~~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~~~ 96 (201)
T COG1435 58 -SSEAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFFDE 96 (201)
T ss_pred -cccceecCChHHHHHHHHhcccCCC-cCEEEEehhHhCCH
Confidence 2234667777777777764322222 88999999998755
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=83.61 E-value=4.5 Score=54.99 Aligned_cols=96 Identities=11% Similarity=0.118 Sum_probs=72.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCC
Q 000174 701 KVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGR 780 (1931)
Q Consensus 701 ~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~ 780 (1931)
..+.|....+..+.... ..+.++||.++++..+..+.+.|++. -+.++..+|| +++..+|.+...+.++|+
T Consensus 171 TGSGKT~v~l~~i~~~l-~~g~~vLvLvPt~~L~~Q~~~~l~~~---fg~~v~~~~s-----~~s~~~r~~~~~~~~~g~ 241 (679)
T PRK05580 171 TGSGKTEVYLQAIAEVL-AQGKQALVLVPEIALTPQMLARFRAR---FGAPVAVLHS-----GLSDGERLDEWRKAKRGE 241 (679)
T ss_pred CCChHHHHHHHHHHHHH-HcCCeEEEEeCcHHHHHHHHHHHHHH---hCCCEEEEEC-----CCCHHHHHHHHHHHHcCC
Confidence 45778877776665542 23678999999999999999988763 2468999999 899999999999999999
Q ss_pred ceEEEEecccccCCCCCCCCEEEEcC
Q 000174 781 VTLLVATSVAEEGLDIRQCNVVIRFD 806 (1931)
Q Consensus 781 ~~vLVaTdVaeeGlDip~~~lVI~fD 806 (1931)
.+|+|+|.-+-- +.+.++.+||.-+
T Consensus 242 ~~IVVgTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 242 AKVVIGARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred CCEEEeccHHhc-ccccCCCEEEEEC
Confidence 999999964321 3444555555433
|
|
| >TIGR01073 pcrA ATP-dependent DNA helicase PcrA | Back alignment and domain information |
|---|
Probab=83.59 E-value=3.5 Score=56.75 Aligned_cols=90 Identities=11% Similarity=0.107 Sum_probs=67.1
Q ss_pred CCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEE
Q 000174 302 EQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGH 381 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~ 381 (1931)
..|++-|++++.. ..++++|.+..|||||.+.+.-|.+++... .-...++|+|+-|+.-+....+.+.+.++-
T Consensus 3 ~~Ln~~Q~~av~~-~~g~~lV~AgaGSGKT~~l~~ria~Li~~~--~i~P~~IL~lTFT~kAA~em~~Rl~~~~~~---- 75 (726)
T TIGR01073 3 AHLNPEQREAVKT-TEGPLLIMAGAGSGKTRVLTHRIAHLIAEK--NVAPWNILAITFTNKAAREMKERVEKLLGP---- 75 (726)
T ss_pred cccCHHHHHHHhC-CCCCEEEEeCCCCCHHHHHHHHHHHHHHcC--CCCHHHeeeeeccHHHHHHHHHHHHHHhcc----
Confidence 3589999999975 358899999999999999999888887632 112356999999988887777777664321
Q ss_pred EeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHH
Q 000174 382 YCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNIL 417 (1931)
Q Consensus 382 ~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L 417 (1931)
....|.|+|...|...+
T Consensus 76 -------------------~~~~~~i~TFHs~~~~i 92 (726)
T TIGR01073 76 -------------------VAEDIWISTFHSMCVRI 92 (726)
T ss_pred -------------------ccCCcEEEcHHHHHHHH
Confidence 11257799998887543
|
Designed to identify pcrA members of the uvrD/rep subfamily. |
| >PRK13709 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=83.37 E-value=4.6 Score=59.36 Aligned_cols=62 Identities=21% Similarity=0.086 Sum_probs=43.5
Q ss_pred CCCcHHHHHHHHHHhc---cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHH
Q 000174 302 EQARPYQLDVLEQAKK---KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVY 365 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~---~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~ 365 (1931)
..+++-|++++..++. +-++|.+..|+|||.+.-.++. .+..+. ...+..++.++||---+.
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~-~~~~l~-~~~~~~V~glAPTgrAAk 1030 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMS-AVNTLP-ESERPRVVGLGPTHRAVG 1030 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH-HHHHhh-cccCceEEEECCcHHHHH
Confidence 4689999999999987 4578999999999977544333 222211 123456889999964443
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=83.16 E-value=4 Score=53.27 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=19.9
Q ss_pred EEEEeCCCchHHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l 342 (1931)
.|++++.|+|||.++.++++.+.
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 41 YLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 58999999999999988877654
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=83.02 E-value=17 Score=44.62 Aligned_cols=121 Identities=15% Similarity=0.161 Sum_probs=63.0
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe-CC-hhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV-PK-VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQ 397 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv-PT-~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~ 397 (1931)
+.+.+++|+|||-.+..++..+.. .+.+|+++. .+ +.-+.+|........++.+... ....
T Consensus 117 i~lvGpnGsGKTTt~~kLA~~l~~------~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~--~~~~--------- 179 (318)
T PRK10416 117 ILVVGVNGVGKTTTIGKLAHKYKA------QGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQ--KEGA--------- 179 (318)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHh------cCCeEEEEecCccchhhHHHHHHHHHHcCceEEEe--CCCC---------
Confidence 568899999999877776654432 234566654 33 3333333333333334333221 1111
Q ss_pred hhcCCccEEEEcH-HHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhc----CCCCCcEEEEEeecC
Q 000174 398 REFDTKQVLVMTA-QILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTT----SKEKRPSVFGMTASP 470 (1931)
Q Consensus 398 ~~~~~~~IlV~Tp-q~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~----~~~~~p~iLgLTATP 470 (1931)
.| ....+.+.. ....++++||+|=+-++..+......++.+.... +....-.+|-++||-
T Consensus 180 -----------dpa~~v~~~l~~--~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~ 244 (318)
T PRK10416 180 -----------DPASVAFDAIQA--AKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATT 244 (318)
T ss_pred -----------CHHHHHHHHHHH--HHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC
Confidence 11 111222221 1235689999999988765444444455554432 222234678899984
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=83.01 E-value=5.3 Score=51.88 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.1
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
+.+|+++|.|+|||..+-++++.+.
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3589999999999999998877654
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=82.95 E-value=5.4 Score=53.05 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=20.5
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l 342 (1931)
.+|++++.|+|||.++..+++.+.
T Consensus 40 a~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Confidence 479999999999999988877654
|
|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=82.83 E-value=5.3 Score=48.74 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=34.0
Q ss_pred CCCcHHHHHHHHHHhc--------cCEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 302 EQARPYQLDVLEQAKK--------KNTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~--------~n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
..++|+|..++..+.. .-.++.++.|+||+..+...+..++-
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC 52 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLA 52 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhC
Confidence 4688999999888764 23789999999999988888776654
|
|
| >PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51 | Back alignment and domain information |
|---|
Probab=82.76 E-value=3.1 Score=49.34 Aligned_cols=100 Identities=19% Similarity=0.246 Sum_probs=54.6
Q ss_pred EEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhhcC
Q 000174 322 AFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFD 401 (1931)
Q Consensus 322 l~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~~ 401 (1931)
++++.|+|||..++.++..........+...+|++|--....-.+-..++.+.+++. . +..++
T Consensus 43 i~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~--------------~---~~~l~ 105 (256)
T PF08423_consen 43 IVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLD--------------P---EEILD 105 (256)
T ss_dssp EEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS---------------H---HHHHH
T ss_pred EEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccc--------------c---chhhh
Confidence 899999999988887665443222223446789999876554333233333322210 0 11223
Q ss_pred CccEE-EEcHHHHHHHHhcc--cccccceeEEEEeCCCcc
Q 000174 402 TKQVL-VMTAQILLNILRHS--IIKMEAINLLILDECHHA 438 (1931)
Q Consensus 402 ~~~Il-V~Tpq~L~d~L~~~--~l~l~~i~lLV~DEaH~~ 438 (1931)
+..|. +.+..-+...+.+- .+.-.+++|||+|-.=.+
T Consensus 106 ~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaal 145 (256)
T PF08423_consen 106 NIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAAL 145 (256)
T ss_dssp TEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHH
T ss_pred ceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHH
Confidence 32322 34556666655441 223367999999986543
|
It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D .... |
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=82.72 E-value=1.3 Score=49.63 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=22.7
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
.|+|+.+|+|+|||-....++++++.
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHhC
Confidence 57899999999999999888877764
|
|
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=82.66 E-value=2.5 Score=51.31 Aligned_cols=57 Identities=30% Similarity=0.302 Sum_probs=39.8
Q ss_pred CcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHH
Q 000174 304 ARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLV 364 (1931)
Q Consensus 304 ~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv 364 (1931)
+.+-|.+.+..+.+ .+++++++||||||-..-.++..+.. ..+..+++.+=.+.||.
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~----~~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAK----NDPTDRVVIIEDTRELQ 175 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhc----cCCCceEEEECCchhhc
Confidence 45667777777776 89999999999999766555433221 12345788888887773
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type | Back alignment and domain information |
|---|
Probab=82.45 E-value=3.1 Score=60.39 Aligned_cols=138 Identities=14% Similarity=0.084 Sum_probs=88.8
Q ss_pred CCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEE
Q 000174 303 QARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHY 382 (1931)
Q Consensus 303 ~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~ 382 (1931)
+.|+-|.++|.. ..+|++|.+.-|||||.+.+--+.+++.. .....++++|+=|+.-+....+.+++.+.-....
T Consensus 1 ~~t~~Q~~ai~~-~~~~~lv~A~AGsGKT~~lv~r~~~~~~~---~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~- 75 (1232)
T TIGR02785 1 QWTDEQWQAIYT-RGQNILVSASAGSGKTAVLVERIIKKILR---GVDIDRLLVVTFTNAAAREMKERIEEALQKALQQ- 75 (1232)
T ss_pred CCCHHHHHHHhC-CCCCEEEEecCCCcHHHHHHHHHHHHHhc---CCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhc-
Confidence 368899999973 34899999999999999988877665542 1223469999999999888777777754211110
Q ss_pred eCCCcccccchHHHHhhc-CCccEEEEcHHHHHHHHhcccccccce--eEEEEeCCCc--ccCCCcHHHHHHHHHh
Q 000174 383 CGEMGQDFWDAQRWQREF-DTKQVLVMTAQILLNILRHSIIKMEAI--NLLILDECHH--AVKKHPYSLVMSEFYH 453 (1931)
Q Consensus 383 ~G~~~~~~~~~~~w~~~~-~~~~IlV~Tpq~L~d~L~~~~l~l~~i--~lLV~DEaH~--~~~~~~~~~im~~~~~ 453 (1931)
.. ....|.+.+ .-...-|+|-..+...+-+.+...-++ ++=|.||... +.. ..+...+..+|.
T Consensus 76 ----~p---~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~~ll~~-e~~~~~~e~~y~ 143 (1232)
T TIGR02785 76 ----EP---NSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQLLLIK-EVVDDVFEEEYY 143 (1232)
T ss_pred ----Cc---hhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHHHHHHH-HHHHHHHHHHHh
Confidence 01 112233333 244567899998886654443322223 4667898775 333 366666666664
|
AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. |
| >PTZ00293 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=82.30 E-value=3.7 Score=46.72 Aligned_cols=35 Identities=14% Similarity=0.100 Sum_probs=25.9
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK 360 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT 360 (1931)
.++++||+||||...+..+.+... .+.+++++-|.
T Consensus 7 ~vi~GpMfSGKTteLLr~i~~y~~------ag~kv~~~kp~ 41 (211)
T PTZ00293 7 SVIIGPMFSGKTTELMRLVKRFTY------SEKKCVVIKYS 41 (211)
T ss_pred EEEECCCCChHHHHHHHHHHHHHH------cCCceEEEEec
Confidence 368999999999776666655433 24668888885
|
|
| >KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.29 E-value=1.8 Score=55.93 Aligned_cols=152 Identities=16% Similarity=0.245 Sum_probs=89.3
Q ss_pred cCCCCCCcHHHHHHHHHHhc-----------cCEEEEeCCCchHHHH-HHHHHHHHHHHhhhcCCCcEEEEEeCChhHHH
Q 000174 298 KMPEEQARPYQLDVLEQAKK-----------KNTIAFLETGAGKTLI-AVLLIRSICNDLQRQNKKMLAVFLVPKVPLVY 365 (1931)
Q Consensus 298 ~~~~~~~~~~Q~eai~~~l~-----------~n~Il~~~TGsGKTli-all~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~ 365 (1931)
......+...|.+++-.+.+ -..+|.+.-|.||-.. +.++...+++ +++++|.+.-+..|-.
T Consensus 259 ~i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLk------GRKrAlW~SVSsDLKf 332 (1300)
T KOG1513|consen 259 SIDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLK------GRKRALWFSVSSDLKF 332 (1300)
T ss_pred cCcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhc------ccceeEEEEecccccc
Confidence 34556788999999877654 2468888888888432 2333334433 3567888888878877
Q ss_pred HHHHHHHHH--cCCcEEEE--------eCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhc--cc----c-cc----
Q 000174 366 QQAEVIREQ--TGYVVGHY--------CGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH--SI----I-KM---- 424 (1931)
Q Consensus 366 Q~~~~l~~~--~~l~v~~~--------~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~--~~----l-~l---- 424 (1931)
.-.+-++.. +++.|..+ .+..+.. -.--|+++||..|...-.. +. + .+
T Consensus 333 DAERDL~DigA~~I~V~alnK~KYakIss~en~n-----------~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~ 401 (1300)
T KOG1513|consen 333 DAERDLRDIGATGIAVHALNKFKYAKISSKENTN-----------TKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWC 401 (1300)
T ss_pred chhhchhhcCCCCccceehhhcccccccccccCC-----------ccceeEEEeeHhhhhhccccCchHHHHHHHHHHHh
Confidence 666667663 23443332 1211110 1346999999988754331 10 0 11
Q ss_pred -cce-eEEEEeCCCcccCCCc--------HHHHHHHHHhhcCCCCCcEEEEEeec
Q 000174 425 -EAI-NLLILDECHHAVKKHP--------YSLVMSEFYHTTSKEKRPSVFGMTAS 469 (1931)
Q Consensus 425 -~~i-~lLV~DEaH~~~~~~~--------~~~im~~~~~~~~~~~~p~iLgLTAT 469 (1931)
.++ ++|||||||++.+-.+ ..+.+-++-... +..|++-.|||
T Consensus 402 Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~L---P~ARVVYASAT 453 (1300)
T KOG1513|consen 402 GEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKL---PNARVVYASAT 453 (1300)
T ss_pred hhccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhC---CCceEEEeecc
Confidence 222 4999999999986211 122222333333 34789999999
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=82.25 E-value=7.3 Score=49.58 Aligned_cols=56 Identities=27% Similarity=0.236 Sum_probs=33.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe-C-ChhHHHHHHHHHHHHcCCcEE
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV-P-KVPLVYQQAEVIREQTGYVVG 380 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv-P-T~~Lv~Q~~~~l~~~~~l~v~ 380 (1931)
+++++++|+|||.++.-++.++... .+.+++++. - .++-+..|...+....++.+.
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~-----~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~ 160 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKK-----KKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVF 160 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHh-----cCCcEEEEEccccchHHHHHHHHHHhhcCCeEE
Confidence 5789999999999888887765442 133455544 2 344333333334444565544
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=82.20 E-value=5.1 Score=52.37 Aligned_cols=94 Identities=13% Similarity=0.136 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCC
Q 000174 701 KVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGR 780 (1931)
Q Consensus 701 ~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~ 780 (1931)
..+.|-...+..+.... ..+.++||.++++.-+..+++.|++. -+..+..+|| +++..+|.++..+.++|+
T Consensus 6 TGsGKT~v~l~~i~~~l-~~g~~vLvlvP~i~L~~Q~~~~l~~~---f~~~v~vlhs-----~~~~~er~~~~~~~~~g~ 76 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVL-ALGKSVLVLVPEIALTPQMIQRFKYR---FGSQVAVLHS-----GLSDSEKLQAWRKVKNGE 76 (505)
T ss_pred CCCCHHHHHHHHHHHHH-HcCCeEEEEeCcHHHHHHHHHHHHHH---hCCcEEEEEC-----CCCHHHHHHHHHHHHcCC
Confidence 45678877776665542 34678999999999999999888763 2457889999 899999999999999999
Q ss_pred ceEEEEecccccCCCCCCCCEEEE
Q 000174 781 VTLLVATSVAEEGLDIRQCNVVIR 804 (1931)
Q Consensus 781 ~~vLVaTdVaeeGlDip~~~lVI~ 804 (1931)
.+|+|+|..+-- +-+.++.+||.
T Consensus 77 ~~IVVGTrsalf-~p~~~l~lIIV 99 (505)
T TIGR00595 77 ILVVIGTRSALF-LPFKNLGLIIV 99 (505)
T ss_pred CCEEECChHHHc-CcccCCCEEEE
Confidence 999999965321 23444555543
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=81.88 E-value=7.3 Score=50.82 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=19.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l 342 (1931)
+|+++|.|+|||.++..++..+.
T Consensus 39 ~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 49999999999999888777654
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=81.65 E-value=4.1 Score=54.13 Aligned_cols=24 Identities=33% Similarity=0.317 Sum_probs=20.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
.|+.++.|+|||.++..+++.+.-
T Consensus 41 yLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred EEEECCCCCCHHHHHHHHHHhhhh
Confidence 489999999999999888776644
|
|
| >PRK06904 replicative DNA helicase; Validated | Back alignment and domain information |
|---|
Probab=81.64 E-value=10 Score=49.11 Aligned_cols=114 Identities=14% Similarity=0.103 Sum_probs=61.6
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH-HcCCcEEEE-eC-CCcccccchHH-
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE-QTGYVVGHY-CG-EMGQDFWDAQR- 395 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~-~~~l~v~~~-~G-~~~~~~~~~~~- 395 (1931)
+||++.||.|||..++-.+.+.+.. .+.+|+|++.. .=..|+...+-. ..++....+ .| ....+.|.+-.
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~-----~g~~Vl~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~g~~l~~~e~~~~~~ 297 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMA-----SEKPVLVFSLE-MPAEQIMMRMLASLSRVDQTKIRTGQNLDQQDWAKISS 297 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHh-----cCCeEEEEecc-CCHHHHHHHHHHhhCCCCHHHhccCCCCCHHHHHHHHH
Confidence 6789999999999887777666542 24568888765 234555555443 334433222 34 33333333211
Q ss_pred HHhhc-CCccEEE-----EcHHHHHHHHhcccccccceeEEEEeCCCccc
Q 000174 396 WQREF-DTKQVLV-----MTAQILLNILRHSIIKMEAINLLILDECHHAV 439 (1931)
Q Consensus 396 w~~~~-~~~~IlV-----~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~ 439 (1931)
....+ ....+.| .|+..+.....+-......+++||||=-+.+.
T Consensus 298 a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 347 (472)
T PRK06904 298 TVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMR 347 (472)
T ss_pred HHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcC
Confidence 11122 2344555 35555554333211112358899999877765
|
|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=81.53 E-value=4.3 Score=61.22 Aligned_cols=58 Identities=16% Similarity=0.092 Sum_probs=42.2
Q ss_pred CCCcHHHHHHHHHHhc---cCEEEEeCCCchHHHHHHH---HHHHHHHHhhhcCCCcEEEEEeCChhHH
Q 000174 302 EQARPYQLDVLEQAKK---KNTIAFLETGAGKTLIAVL---LIRSICNDLQRQNKKMLAVFLVPKVPLV 364 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~---~n~Il~~~TGsGKTliall---~i~~~l~~~~~~~~~~~vL~LvPT~~Lv 364 (1931)
..+++.|++++..++. +-++|.+..|+|||.+... ++.+.+.. .+..++.++||-.-+
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~-----~g~~v~glApT~~Aa 1081 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES-----EQLQVIGLAPTHEAV 1081 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh-----cCCeEEEEeChHHHH
Confidence 5799999999999886 3467899999999977633 33333331 346799999995433
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=81.48 E-value=5.2 Score=54.31 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=18.7
Q ss_pred cCEEEEeCCCchHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~ 339 (1931)
.++|+++|+|+|||..+-.+..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~ 74 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIAN 74 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999988877654
|
|
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=81.21 E-value=4.2 Score=47.49 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=18.4
Q ss_pred cCEEEEeCCCchHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~ 340 (1931)
..+++++|.|+|||-.|.+.+.+
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA~E 75 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIANE 75 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHHHH
Confidence 45899999999999877766543
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=81.19 E-value=4 Score=53.59 Aligned_cols=100 Identities=20% Similarity=0.297 Sum_probs=72.8
Q ss_pred EEEEEeehhHHHHHHHHHhcCCCCC-CceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEec-----ccccC-CCC
Q 000174 724 AIIFVERVVAALVLPKVFAELPSLS-FVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATS-----VAEEG-LDI 796 (1931)
Q Consensus 724 ~IIFv~~r~ta~~L~~~L~~~~~l~-~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTd-----VaeeG-lDi 796 (1931)
+||+++||.-|..+++.+..+.... ++++..++| +++...|...++ .| .+|||||+ .+.+| +|+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~G-----G~~~~~q~~~l~---~~-~~ivVaTPGRllD~i~~~~l~l 172 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYG-----GVSIRKQIEALK---RG-VDIVVATPGRLLDLIKRGKLDL 172 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEEC-----CCCHHHHHHHHh---cC-CCEEEECccHHHHHHHcCCcch
Confidence 9999999999999999988765434 688999999 888777665544 46 99999996 56666 888
Q ss_pred CCCCEEEE------cCCCCCHHHHHHhhccCCCCCCcEEEEEec
Q 000174 797 RQCNVVIR------FDLAKTVLAYIQSRGRARKPGSDYILMIER 834 (1931)
Q Consensus 797 p~~~lVI~------fD~p~s~~~yiQr~GRa~R~Gs~~ivlv~~ 834 (1931)
..+.++|. .|+ ....-+..+.+.-....+..+|..+
T Consensus 173 ~~v~~lVlDEADrmLd~--Gf~~~i~~I~~~~p~~~qtllfSAT 214 (513)
T COG0513 173 SGVETLVLDEADRMLDM--GFIDDIEKILKALPPDRQTLLFSAT 214 (513)
T ss_pred hhcCEEEeccHhhhhcC--CCHHHHHHHHHhCCcccEEEEEecC
Confidence 88888874 444 5555555555554444445555443
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=81.17 E-value=13 Score=47.08 Aligned_cols=56 Identities=13% Similarity=-0.001 Sum_probs=34.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC--ChhHHHHHHHHHHHHcCCcEEE
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP--KVPLVYQQAEVIREQTGYVVGH 381 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP--T~~Lv~Q~~~~l~~~~~l~v~~ 381 (1931)
+++++++|+|||-.+..++..+.. .+.+|++++- -++-+.+|.+......++++..
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~------~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~ 160 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQR------KGFKPCLVCADTFRAGAFDQLKQNATKARIPFYG 160 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH------CCCCEEEEcCcccchhHHHHHHHHhhccCCeEEe
Confidence 578999999999877776654432 1334555543 2555555655555555655543
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin | Back alignment and domain information |
|---|
Probab=81.13 E-value=0.86 Score=50.68 Aligned_cols=41 Identities=15% Similarity=0.180 Sum_probs=29.5
Q ss_pred cCCccEEEEcHHHHHHHHhccccc--ccceeEEEEeCCCcccC
Q 000174 400 FDTKQVLVMTAQILLNILRHSIIK--MEAINLLILDECHHAVK 440 (1931)
Q Consensus 400 ~~~~~IlV~Tpq~L~d~L~~~~l~--l~~i~lLV~DEaH~~~~ 440 (1931)
....+|||+++.-|++......+. ...-.+|||||||++-+
T Consensus 117 ~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 117 AKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred cccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 457899999999999865443332 23446999999999965
|
RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A. |
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=80.92 E-value=7.1 Score=50.87 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=20.2
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
.|++++.|+|||.++..++..+..
T Consensus 39 yLf~Gp~G~GKTt~Ar~LAk~L~c 62 (535)
T PRK08451 39 YLFSGLRGSGKTSSARIFARALVC 62 (535)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Confidence 489999999999999888776643
|
|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=80.88 E-value=6.8 Score=52.37 Aligned_cols=26 Identities=27% Similarity=0.213 Sum_probs=21.5
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
..+|++++.|+|||..+..+++.+.-
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhcC
Confidence 34689999999999999998876643
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=80.85 E-value=3.7 Score=50.90 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=21.0
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
..++.++.|+|||..+...++.++.
T Consensus 47 a~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 47 ALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred eEeeECCCCCCHHHHHHHHHHHHcC
Confidence 4799999999999888887776654
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=80.70 E-value=17 Score=45.75 Aligned_cols=117 Identities=13% Similarity=0.105 Sum_probs=60.7
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe-CC-hhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV-PK-VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQ 397 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv-PT-~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~ 397 (1931)
+++.+++|+|||..+..++.+.... .+.++.++. .+ +..+..|........++.+.
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~-----~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~----------------- 283 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLH-----MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY----------------- 283 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHh-----cCCeEEEecccchhhhHHHHHHHHHHhcCCCee-----------------
Confidence 6689999999998888877654321 123343333 32 33333333333232232221
Q ss_pred hhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCC-CCCcEEEEEeecCC
Q 000174 398 REFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSK-EKRPSVFGMTASPV 471 (1931)
Q Consensus 398 ~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~-~~~p~iLgLTATP~ 471 (1931)
.+..+..+.+.+. -...++||+|=+-+...+......+..+...... ...-.+|-|+||-.
T Consensus 284 --------~~~~~~~l~~~l~-----~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~ 345 (432)
T PRK12724 284 --------PVKDIKKFKETLA-----RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS 345 (432)
T ss_pred --------ehHHHHHHHHHHH-----hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC
Confidence 1111223333332 2567899999876664433444455555543311 12346788999854
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=80.26 E-value=6.4 Score=49.36 Aligned_cols=23 Identities=39% Similarity=0.375 Sum_probs=19.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l 342 (1931)
+|+.+|.|+|||..+...+..+.
T Consensus 41 ~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred EEEecCCCCCHHHHHHHHHHHhc
Confidence 58999999999999888876653
|
|
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=80.13 E-value=6 Score=48.78 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=31.3
Q ss_pred CcHHHHHHHHHHhc------cCEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 304 ARPYQLDVLEQAKK------KNTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 304 ~~~~Q~eai~~~l~------~n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
++|+|......+.. +-.++.++.|.|||..+...+..++-
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC 47 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLC 47 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 46888888777764 34689999999999998888776654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1931 | ||||
| 3c4t_A | 265 | Structure Of Rnaseiiib And Dsrna Binding Domains Of | 1e-36 | ||
| 2lrs_A | 71 | The Second Dsrbd Domain From A. Thaliana Dicer-like | 4e-35 | ||
| 3c4b_A | 265 | Structure Of Rnaseiiib And Dsrna Binding Domains Of | 5e-35 | ||
| 2eb1_A | 200 | Crystal Structure Of The C-Terminal Rnase Iii Domai | 4e-33 | ||
| 4a2p_A | 556 | Structure Of Duck Rig-I Helicase Domain Length = 55 | 9e-31 | ||
| 4a2q_A | 797 | Structure Of Duck Rig-I Tandem Cards And Helicase D | 1e-30 | ||
| 4gl2_A | 699 | Structural Basis For Dsrna Duplex Backbone Recognit | 1e-18 | ||
| 3tbk_A | 555 | Mouse Rig-I Atpase Domain Length = 555 | 2e-17 | ||
| 3tbk_A | 555 | Mouse Rig-I Atpase Domain Length = 555 | 2e-11 | ||
| 4a2w_A | 936 | Structure Of Full-Length Duck Rig-I Length = 936 | 2e-16 | ||
| 4a2w_A | 936 | Structure Of Full-Length Duck Rig-I Length = 936 | 2e-13 | ||
| 3tmi_A | 695 | Structural Basis For Rna Recognition And Activation | 5e-16 | ||
| 3tmi_A | 695 | Structural Basis For Rna Recognition And Activation | 6e-11 | ||
| 2ykg_A | 696 | Structural Insights Into Rna Recognition By Rig-I L | 1e-15 | ||
| 2ykg_A | 696 | Structural Insights Into Rna Recognition By Rig-I L | 6e-11 | ||
| 4ay2_A | 687 | Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I | 2e-15 | ||
| 4ay2_A | 687 | Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I | 6e-11 | ||
| 3n3w_A | 248 | 2.2 Angstrom Resolution Crystal Structure Of Nuclea | 2e-14 | ||
| 3o2r_A | 170 | Structural Flexibility In Region Involved In Dimer | 3e-13 | ||
| 3o2r_D | 144 | Structural Flexibility In Region Involved In Dimer | 5e-13 | ||
| 2kou_A | 102 | Dicer Like Protein Length = 102 | 7e-12 | ||
| 1wp9_A | 494 | Crystal Structure Of Pyrococcus Furiosus Hef Helica | 2e-11 | ||
| 1wp9_A | 494 | Crystal Structure Of Pyrococcus Furiosus Hef Helica | 4e-05 | ||
| 4i1s_A | 243 | Melanoma Differentiation Associated Protein-5 Helic | 3e-11 | ||
| 2a11_A | 242 | Crystal Structure Of Nuclease Domain Of Ribonuclase | 2e-10 | ||
| 3b6e_A | 216 | Crystal Structure Of Human Dech-Box Rna Helicase Md | 3e-10 | ||
| 1jfz_A | 154 | Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii En | 2e-09 | ||
| 1i4s_A | 147 | Crystal Structure Of Rnase Iii Endonuclease Domain | 3e-09 | ||
| 1yyk_A | 221 | Crystal Structure Of Rnase Iii From Aquifex Aeolicu | 9e-09 | ||
| 1yz9_A | 221 | Crystal Structure Of Rnase Iii Mutant E110q From Aq | 2e-08 | ||
| 1rc7_A | 220 | Crystal Structure Of Rnase Iii Mutant E110k From Aq | 2e-08 | ||
| 1yyo_A | 221 | Crystal Structure Of Rnase Iii Mutant E110k From Aq | 3e-08 | ||
| 2ez6_A | 221 | Crystal Structure Of Aquifex Aeolicus Rnase Iii (d4 | 3e-08 | ||
| 1o0w_A | 252 | Crystal Structure Of Ribonuclease Iii (Tm1102) From | 3e-08 | ||
| 2jgn_A | 185 | Ddx3 Helicase Domain Length = 185 | 9e-06 | ||
| 2i4i_A | 417 | Crystal Structure Of Human Dead-Box Rna Helicase Dd | 1e-05 | ||
| 3rv0_A | 341 | Crystal Structure Of K. Polysporus Dcr1 Without The | 5e-05 | ||
| 3rv1_A | 246 | Crystal Structure Of The N-Terminal And Rnase Iii D | 5e-05 | ||
| 2db3_A | 434 | Structural Basis For Rna Unwinding By The Dead-Box | 1e-04 | ||
| 1s2m_A | 400 | Crystal Structure Of The Dead Box Protein Dhh1p Len | 4e-04 | ||
| 3fht_A | 412 | Crystal Structure Of Human Dbp5 In Complex With Amp | 6e-04 | ||
| 3fmp_B | 479 | Crystal Structure Of The Nucleoporin Nup214 In Comp | 6e-04 | ||
| 2yjt_D | 170 | Crystal Structure Of E. Coli Dead-Box Protein Srmb | 7e-04 |
| >pdb|3C4T|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse Dicer Length = 265 | Back alignment and structure |
|
| >pdb|2LRS|A Chain A, The Second Dsrbd Domain From A. Thaliana Dicer-like 1 Length = 71 | Back alignment and structure |
|
| >pdb|3C4B|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse Dicer Length = 265 | Back alignment and structure |
|
| >pdb|2EB1|A Chain A, Crystal Structure Of The C-Terminal Rnase Iii Domain Of Human Dicer Length = 200 | Back alignment and structure |
|
| >pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain Length = 556 | Back alignment and structure |
|
| >pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain Length = 797 | Back alignment and structure |
|
| >pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By Mda5 Length = 699 | Back alignment and structure |
|
| >pdb|3TBK|A Chain A, Mouse Rig-I Atpase Domain Length = 555 | Back alignment and structure |
|
| >pdb|3TBK|A Chain A, Mouse Rig-I Atpase Domain Length = 555 | Back alignment and structure |
|
| >pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I Length = 936 | Back alignment and structure |
|
| >pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I Length = 936 | Back alignment and structure |
|
| >pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of Rig-I Length = 695 | Back alignment and structure |
|
| >pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of Rig-I Length = 695 | Back alignment and structure |
|
| >pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I Length = 696 | Back alignment and structure |
|
| >pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I Length = 696 | Back alignment and structure |
|
| >pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I Length = 687 | Back alignment and structure |
|
| >pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I Length = 687 | Back alignment and structure |
|
| >pdb|3N3W|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Nuclease Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni Length = 248 | Back alignment and structure |
|
| >pdb|3O2R|A Chain A, Structural Flexibility In Region Involved In Dimer Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc) From Campylobacter Jejuni Length = 170 | Back alignment and structure |
|
| >pdb|2KOU|A Chain A, Dicer Like Protein Length = 102 | Back alignment and structure |
|
| >pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase Domain Length = 494 | Back alignment and structure |
|
| >pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase Domain Length = 494 | Back alignment and structure |
|
| >pdb|4I1S|A Chain A, Melanoma Differentiation Associated Protein-5 Helicase Domain Complex With Inhibitor Non-structural Protein V Length = 243 | Back alignment and structure |
|
| >pdb|2A11|A Chain A, Crystal Structure Of Nuclease Domain Of Ribonuclase Iii From Mycobacterium Tuberculosis Length = 242 | Back alignment and structure |
|
| >pdb|3B6E|A Chain A, Crystal Structure Of Human Dech-Box Rna Helicase Mda5 (Melanoma Differentiation-Associated Protein 5), Dech-Domain Length = 216 | Back alignment and structure |
|
| >pdb|1JFZ|A Chain A, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.10 Angstrom Resolution Length = 154 | Back alignment and structure |
|
| >pdb|1I4S|A Chain A, Crystal Structure Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.15 Angstrom Resolution Length = 147 | Back alignment and structure |
|
| >pdb|1YYK|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Double-Stranded Rna At 2.5-Angstrom Resolution Length = 221 | Back alignment and structure |
|
| >pdb|1YZ9|A Chain A, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex Aeolicus Complexed With Double Stranded Rna At 2.1- Angstrom Resolution Length = 221 | Back alignment and structure |
|
| >pdb|1RC7|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex Aeolicus Complexed With Ds-Rna At 2.15 Angstrom Resolution Length = 220 | Back alignment and structure |
|
| >pdb|1YYO|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex Aeolicus Complexed With Double-stranded Rna At 2.9- Angstrom Resolution Length = 221 | Back alignment and structure |
|
| >pdb|2EZ6|A Chain A, Crystal Structure Of Aquifex Aeolicus Rnase Iii (d44n) Complexed With Product Of Double-stranded Rna Processing Length = 221 | Back alignment and structure |
|
| >pdb|1O0W|A Chain A, Crystal Structure Of Ribonuclease Iii (Tm1102) From Thermotoga Maritima At 2.0 A Resolution Length = 252 | Back alignment and structure |
|
| >pdb|2JGN|A Chain A, Ddx3 Helicase Domain Length = 185 | Back alignment and structure |
|
| >pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x Length = 417 | Back alignment and structure |
|
| >pdb|3RV0|A Chain A, Crystal Structure Of K. Polysporus Dcr1 Without The C-Terminal Dsrbd Length = 341 | Back alignment and structure |
|
| >pdb|3RV1|A Chain A, Crystal Structure Of The N-Terminal And Rnase Iii Domains Of K. Polysporus Dcr1 E224q Mutant Length = 246 | Back alignment and structure |
|
| >pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein Drosophila Vasa Length = 434 | Back alignment and structure |
|
| >pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p Length = 400 | Back alignment and structure |
|
| >pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And Rna Length = 412 | Back alignment and structure |
|
| >pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 479 | Back alignment and structure |
|
| >pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound To Regulator Of Ribonuclease Activity A (Rraa) Length = 170 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 341 bits (875), Expect = e-103
Identities = 129/570 (22%), Positives = 228/570 (40%), Gaps = 56/570 (9%)
Query: 303 QARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKV 361
+ R YQL++ AKK KNTI TG GKT +++L+ +K VF ++
Sbjct: 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKK-FPCGQKGKVVFFANQI 62
Query: 362 PLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSI 421
P+ QQA V +G+ + D+ Q + ++++T QIL+N L +
Sbjct: 63 PVYEQQATVFSRYFE-RLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGA 121
Query: 422 I-KMEAINLLILDECHHAVKKHPYSLVMSEFYHT---TSKEKRPSVFGMTASPVNLKGVS 477
I + L+I DECH+ K HPY+ +M + S++ P V G+TAS
Sbjct: 122 IPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGV-GDAK 180
Query: 478 SQVDCAIKICNLESKLDSVVCTI--KDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQ 535
+ + IC L + LD+ V + ELE+ V P ++ + S +
Sbjct: 181 TAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQL 240
Query: 536 MEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYA 595
M+ + A S K + R+ G ++ + + G + K ++
Sbjct: 241 MKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVG-------------VHKACSVFQM 287
Query: 596 LGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDA 655
+ + K + + L+ A + Q + + ++ E A + +
Sbjct: 288 ADKEEESRVCKALFLYTSHLRKYNDA-LIISEDAQMTDALNYLKAFFHDVREAAFDETER 346
Query: 656 KVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLK 715
++ E ++ + + PK++ L +L +
Sbjct: 347 ELTRRFE------------------------EKLEELEKVSRDPSNENPKLRDLYLVLQE 382
Query: 716 -YQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNS---QEMRTFQMQE 771
Y + + I+FV+ L K E P+LSF+K L G + M +
Sbjct: 383 EYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKC 442
Query: 772 TIAKFR-DGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYIL 830
+ FR G +L+ATSVA+EG+DI +CN+VI ++ V+ IQ+RGR R S L
Sbjct: 443 VLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGRGRARDSKCFL 502
Query: 831 MIERGNLSHATFLRNARNSEETLRKEAIER 860
+ ++ + E + E+I R
Sbjct: 503 LTSSADVIEKEKANMIK---EKIMNESILR 529
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 330 bits (846), Expect = 2e-97
Identities = 141/673 (20%), Positives = 244/673 (36%), Gaps = 71/673 (10%)
Query: 300 PEEQARPYQLDVLEQA-KKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV 358
+ R YQL++ A K KNTI TG GKT +++L+ Q +K VF
Sbjct: 10 SPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKK-FPQGQKGKVVFFA 68
Query: 359 PKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILR 418
++P+ Q V + G G + ++ + ++++T QIL+N L+
Sbjct: 69 NQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVP-VEQIVENNDIIILTPQILVNNLK 127
Query: 419 HSII-KMEAINLLILDECHHAVKKHPYSLVMSEFYH---TTSKEKRPSVFGMTASPVNLK 474
I + L+I DECH+ K+HPY+++M + S P V G+TAS
Sbjct: 128 KGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGV-G 186
Query: 475 GVSSQVDCAIKICNLESKLD-SVVCTIK-DRKELEKHVPMPSEVVVEYDKAASLWSLHEQ 532
+ + IC L + LD SV+ T+K + +ELE+ V P + + + S
Sbjct: 187 DAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS-DKFKYI 245
Query: 533 LKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAI 592
+ Q+ M ++ AK + + +S +++
Sbjct: 246 IAQL-------------------MRDTESLAKRICKDLENLS-------------QIQNR 273
Query: 593 NYALGELGQWC-AYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVS 651
+ + QW + A DE + + S+L K L
Sbjct: 274 EFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKD 333
Query: 652 KKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIK 711
D N G E+ E + + + PK++ L
Sbjct: 334 ALDYLKDFFSNVRAAGFD------EIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF 387
Query: 712 ILLK-YQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNS---QEMRTF 767
IL + Y + I+FV+ L P LSF+K L G + M
Sbjct: 388 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 447
Query: 768 QMQETIAKFR-DGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGS 826
+ + F+ G +L+ATSVA+EG+DI QCN+VI ++ V+ IQ+RGR R GS
Sbjct: 448 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGS 507
Query: 827 DYILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAVPGTVYQVE 886
L+ + + E+ + + +++ + + +
Sbjct: 508 KCFLLTSNAGVIEK--EQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQ 565
Query: 887 STGAVVSLNSAVGLIHFYCSQL----------PSDRYSILRPEF----IMERHEKPGGPT 932
V L+ C L Y++L F + H KP +
Sbjct: 566 EKPKPVPDKENKKLLCRKCKALACYTADVRVIEDCHYTVLGDAFKECFVSRPHPKPKQFS 625
Query: 933 EYSCKLQLPCNAP 945
+ + ++ C
Sbjct: 626 SFEKRAKIFCARQ 638
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 323 bits (828), Expect = 9e-97
Identities = 122/583 (20%), Positives = 220/583 (37%), Gaps = 57/583 (9%)
Query: 299 MPEEQARPYQLDVLEQA-KKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFL 357
M ++AR YQ+++ + A KN + TG+GKT +++L+ + +K VFL
Sbjct: 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQN-MPAGRKAKVVFL 61
Query: 358 VPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNIL 417
KVP+ QQ V + G G + + ++ + ++V+T QIL+N
Sbjct: 62 ATKVPVYEQQKNVFKHHFERQGYSVQGISG-ENFSNVSVEKVIEDSDIIVVTPQILVNSF 120
Query: 418 RH-SIIKMEAINLLILDECHHAVKKHPYSLVMSEFYH--TTSKEKRPSVFGMTASPVNLK 474
++ + L+I DECH+ HPY+++M+ + S + P + G+TAS
Sbjct: 121 EDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGV-G 179
Query: 475 GVSSQVDCAIKICNLESKLDS--VVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQ 532
+ + IC+L S LD + ++ +EL++ + P V +
Sbjct: 180 NAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKR-RIHNPFAAI 238
Query: 533 LKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAI 592
+ + E ++ +D G + + + + ++ I
Sbjct: 239 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLED-KEEESRI 297
Query: 593 NYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSK 652
AL + ++ A L F L Q
Sbjct: 298 CRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQ---------- 347
Query: 653 KDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKI 712
L E +I + + PK++ L+ I
Sbjct: 348 -----------------------HLTAKFQ----EKEPELIALSKDETNENPKLEELVCI 380
Query: 713 LL-KYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTF---Q 768
L Y++ R ++F + L K E P L+++K L+G +
Sbjct: 381 LDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPS 440
Query: 769 MQETIAKFRDGRV-TLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827
+ + F+ + LL+ATSVA+EG+DI QCN+V+ ++ + V IQ RGR R GS
Sbjct: 441 QKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSK 500
Query: 828 YILMIERGNLSHATFLRNARNSEETLRK--EAIERTDLSHLKD 868
IL+ + + + R EE + K E I++ D
Sbjct: 501 CILVTSKTEVVE--NEKCNRYKEEMMNKAVEKIQKWDEETFAK 541
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 316 bits (809), Expect = 2e-90
Identities = 130/738 (17%), Positives = 251/738 (34%), Gaps = 67/738 (9%)
Query: 195 CSSDKDRVFGRKRLRDLDDIGRRDRDPMRRREHYN-GSSRKDVRDKDFRDREPRGYWERD 253
+ + + R + + + R + + S + D R W+
Sbjct: 133 IDRECEEIQQISENRSKAAGITKLIECLCRSDKEHWPKSLQLALDTTGYYRA-SELWDIR 191
Query: 254 RLGSNGMVFRLGSWEAD-------HNRAGKEANGINQECNGKVGKKSEAKEKMPEEQARP 306
+ + + D ++ + + +++ + ++AR
Sbjct: 192 EDNAKDVDSEMTDASEDCLEASMTYSEEAEPDDNLSENLGSAAEGIGKPPPVYETKKARS 251
Query: 307 YQLDVLEQA-KKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVY 365
YQ+++ + A KN + TG+GKT +++L+ + +K VFL KVP+
Sbjct: 252 YQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQN-MPAGRKAKVVFLATKVPVYE 310
Query: 366 QQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS-IIKM 424
QQ V + G G + + ++ + ++V+T QIL+N + +
Sbjct: 311 QQKNVFKHHFERQGYSVQGISG-ENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSL 369
Query: 425 EAINLLILDECHHAVKKHPYSLVMSEFYH--TTSKEKRPSVFGMTASPVNLKGVSSQVDC 482
L+I DECH+ HPY+++M+ + S + P + G+TAS + +
Sbjct: 370 SIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGV-GNAKNIEET 428
Query: 483 AIKICNLESKLDSVVCTIK--DRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEVAV 540
IC+L S LD + + +EL++ + P V + + +
Sbjct: 429 IEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIH-NPFAAIISNLMSET 487
Query: 541 EEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELG 600
E ++ + +D G + + + + ++ I AL
Sbjct: 488 EALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLED-KEEESRICRALFICT 546
Query: 601 QWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDS 660
+ ++ A L F
Sbjct: 547 EHLRKYNDALIISEDARIIDALSYLTEFFTN----------------------------- 577
Query: 661 ENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLK-YQHT 719
EL E +I + + PK++ L+ IL Y++
Sbjct: 578 --------VKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYN 629
Query: 720 EDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNS---QEMRTFQMQETIAKF 776
R ++F + L K E P L+++K L+G M + + F
Sbjct: 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 689
Query: 777 RDGRV-TLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIERG 835
+ + LL+ATSVA+EG+DI QCN+V+ ++ + V IQ RGR R GS IL+ +
Sbjct: 690 KTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKT 749
Query: 836 NLSHATFLRNARNSEETLRK--EAIERTDLSHLKDTSRLISVDAVPGTVYQVESTGAVVS 893
+ + R EE + K E I++ D + +
Sbjct: 750 EVVEN--EKCNRYKEEMMNKAVEKIQKWDEETFAKKIHNLQMKERV-LRDSRRKEIKPKV 806
Query: 894 LNSAVGLIHFYCSQLPSD 911
+ L+ C
Sbjct: 807 VEGQKNLLCGKCKAYACS 824
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 300 bits (770), Expect = 1e-89
Identities = 115/564 (20%), Positives = 209/564 (37%), Gaps = 89/564 (15%)
Query: 303 QARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVP 362
Q R YQ + + K+ N + L TG GKTLIA+++ L + K + L P P
Sbjct: 9 QPRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYR---LTKYGGK--VLMLAPTKP 63
Query: 363 LVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSII 422
LV Q AE R G+ + + + +V+V T Q + N L I
Sbjct: 64 LVLQHAESFRRLFNLPPEKIVALTGEKSPE--ERSKAWARAKVIVATPQTIENDLLAGRI 121
Query: 423 KMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDC 482
+E ++L++ DE H AV + Y + E+ K P V G+TASP + +V
Sbjct: 122 SLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQA---KNPLVIGLTASPGSTPEKIMEVIN 178
Query: 483 AIKICNLE--SKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAAS--LWSLHEQLKQMEV 538
+ I ++E S+ V E E+ E K L + L + +
Sbjct: 179 NLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGL 238
Query: 539 AVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGE 598
SS K + + A +E + + + +++A+ E
Sbjct: 239 LE----SSSPDIPKKEVLRAGQIINEEMAKGNHDLRGL------LLYHAMALKLHHAI-E 287
Query: 599 LGQWCAYKVAQSFLTALQNDERANYQLDVK--FQESYLSKVVSLLQCELVEGAVSKKDAK 656
L + ++++ L + +A K F + + K +SLL
Sbjct: 288 LLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLV-------------- 333
Query: 657 VVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLK- 715
A G PK+ L +I+ +
Sbjct: 334 --------------------------------------QAKEIGLDHPKMDKLKEIIREQ 355
Query: 716 YQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHN---NSQEMRTFQMQET 772
Q ++ + I+F A + +K+ +G N + + + +
Sbjct: 356 LQRKQNSKIIVFTNYRETAKKI----VNELVKDGIKAKRFVGQASKENDRGLSQREQKLI 411
Query: 773 IAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGR-ARKPGSDYILM 831
+ +F G +LVATSV EEGLD+ + ++V+ ++ + + IQ RGR R I++
Sbjct: 412 LDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIIL 471
Query: 832 IERGNLSHATFLRNARNSEETLRK 855
+ +G + ++R E+ +++
Sbjct: 472 MAKGT-RDEAYYWSSRQKEKIMQE 494
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 304 bits (780), Expect = 8e-88
Identities = 129/671 (19%), Positives = 248/671 (36%), Gaps = 66/671 (9%)
Query: 218 DRDPMRRREHYNGSSRKDVRDKDFRDREPRGYWERDRLGSNGMVFRLGSWEAD------- 270
+ +EH+ S + D R W+ + + + D
Sbjct: 158 ECLCRSDKEHW-PKSLQLALDTTGYYRA-SELWDIREDNAKDVDSEMTDASEDCLEASMT 215
Query: 271 HNRAGKEANGINQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQA-KKKNTIAFLETGAG 329
++ + + +++ + ++AR YQ+++ + A KN + TG+G
Sbjct: 216 YSEEAEPDDNLSENLGSAAEGIGKPPPVYETKKARSYQIELAQPAINGKNALICAPTGSG 275
Query: 330 KTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQD 389
KT +++L+ + +K VFL KVP+ QQ V + G G +
Sbjct: 276 KTFVSILICEHHFQN-MPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISG-E 333
Query: 390 FWDAQRWQREFDTKQVLVMTAQILLNILRH-SIIKMEAINLLILDECHHAVKKHPYSLVM 448
+ ++ + ++V+T QIL+N ++ + L+I DECH+ HPY+++M
Sbjct: 334 NFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLM 393
Query: 449 SEFYH--TTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDS--VVCTIKDRK 504
+ + S + P + G+TAS + + IC+L S LD + ++ +
Sbjct: 394 TRYLEQKFNSASQLPQILGLTASVGV-GNAKNIEETIEHICSLCSYLDIQAISTVRENIQ 452
Query: 505 ELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAK 564
EL++ + P E+ V K + + E ++ +D G +
Sbjct: 453 ELQRFMNKP-EIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQ 511
Query: 565 EELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQ 624
I + L + ++ ++ ++ + N
Sbjct: 512 NYEHW----------------IVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDA 555
Query: 625 LDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVS 684
L + ++ + +S L F
Sbjct: 556 LIISE-DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQ------------------- 595
Query: 685 GGEHVDVIIGAAVADGKVTPKVQSLIKILLK-YQHTEDFRAIIFVERVVAALVLPKVFAE 743
E +I + + PK++ L+ IL Y++ R ++F + L K E
Sbjct: 596 --EKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEE 653
Query: 744 LPSLSFVKSASLIGHNNS---QEMRTFQMQETIAKFRDGRV-TLLVATSVAEEGLDIRQC 799
P L+++K L+G M + + F+ + LL+ATSVA+EG+DI QC
Sbjct: 654 NPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQC 713
Query: 800 NVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIERGNLSHATFLRNARNSEETLRK--EA 857
N+V+ ++ + V IQ RGR R GS IL+ + + + R EE + K E
Sbjct: 714 NLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKTEVVE--NEKCNRYKEEMMNKAVEK 771
Query: 858 IERTDLSHLKD 868
I++ D
Sbjct: 772 IQKWDEETFAK 782
|
| >3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265 | Back alignment and structure |
|---|
Score = 263 bits (673), Expect = 9e-80
Identities = 98/253 (38%), Positives = 138/253 (54%), Gaps = 13/253 (5%)
Query: 1591 DFHALEDALKIKFKDRGLLVEAITHAS-RPSSGVSCYQRLEFVGDAVLDHLITKHLFFSY 1649
F E + +FK++ L++A THAS ++ CYQRLEF+GDA+LD+LITKHL+
Sbjct: 14 GFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDP 73
Query: 1650 TNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLE------ 1703
PG LTDLR+A VNN FA +AVK+ H + + S L I DFVK LE
Sbjct: 74 RQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQG 133
Query: 1704 ---ELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMVTP 1760
EL + + D + PK +GDI ES+AGAI++DSG VVWQV+ P++ P++
Sbjct: 134 MDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEK 193
Query: 1761 ETL--PMHPVRELQERCQQQAEGLEYKASRSGNLATVEVYIDGVQVGVAQNPQKKMAQKL 1818
+ P PVREL E + A+ + + G + V V + G ++A+
Sbjct: 194 FSANVPRSPVRELLEMEPETAKFSPAERTYDGKV-RVTVEVVGKGKFKGVGRSYRIAKSA 252
Query: 1819 AARNALAVLKEKE 1831
AAR AL LK +
Sbjct: 253 AARRALRSLKANQ 265
|
| >3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-24
Identities = 42/202 (20%), Positives = 75/202 (37%), Gaps = 31/202 (15%)
Query: 1359 PSIMRRVESMLLAIQ-LKDKINYPVPASKIL-EALTAASCQE---TFCYERAELLGDAYL 1413
P + + ++ + + KINY L +A T AS T CY+R E LGDA L
Sbjct: 2 PDAEKTLNHLISGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 61
Query: 1414 KWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPG 1473
+++++ L+ Q G LT +R +V+N + A+ Y +A
Sbjct: 62 DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKA------------ 109
Query: 1474 VLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSSYRVLSSK 1533
LF + +L ++ + + + E + K
Sbjct: 110 -----------VSPELFHVIDDFVKFQLEKNEMQGMDSELRRSEEDEEKEEDIEV---PK 155
Query: 1534 TLADVVEALIGVYYVEGGKDAA 1555
+ D+ E+L G Y++ G
Sbjct: 156 AMGDIFESLAGAIYMDSGMSLE 177
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 | Back alignment and structure |
|---|
Score = 212 bits (542), Expect = 6e-63
Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 19/191 (9%)
Query: 297 EKMPEEQARPYQLDVLEQA-KKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAV 355
PE Q RPYQ++V + A + KN I L TG+GKT +AV + + + ++ ++ +
Sbjct: 27 SPEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVI 86
Query: 356 FLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLN 415
LV KV LV Q + G G D + + +++ TAQIL N
Sbjct: 87 VLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSG-DTQLKISFPEVVKSCDIIISTAQILEN 145
Query: 416 IL------RHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKR--------- 460
L + +++ +L+I+DECHH K+ Y+ +M + K R
Sbjct: 146 SLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVI 205
Query: 461 --PSVFGMTAS 469
P + G+TAS
Sbjct: 206 PLPQILGLTAS 216
|
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 | Back alignment and structure |
|---|
Score = 191 bits (486), Expect = 3e-50
Identities = 116/652 (17%), Positives = 181/652 (27%), Gaps = 169/652 (25%)
Query: 1227 DSCANAGDLEGRIVTAAHSGKRFY-VESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQ 1285
D + L GR+V Y V I T+ S F R + +Y YY
Sbjct: 148 DYSTLSASLHGRMVATPEISWSLYVVLGIDSTQTSLSYFTRANESI------TYMRYYAT 201
Query: 1286 KYGVELIFKKQPLIRGRGVSYCKNLLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIH 1345
+ + L PL+ + K+ P ++ + FLPPELC +
Sbjct: 202 AHNIHLRAADLPLVAAVRLDDLKDHQIPAPGSWDDLAPK---------LRFLPPELCLLL 252
Query: 1346 PLPGSLVR--GAQRLPSIMRRVESMLL---AIQLKDKINYPVPASKILE----------- 1389
P L+R Q LP I + + + A+ + +
Sbjct: 253 PDEFDLIRVQALQFLPEIAKHICDIQNTICALDKSFPDCGRIGGERYFAITAGLRLDQGR 312
Query: 1390 ---------ALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQM 1440
T ++R ELLGDA L ++V+ L +P G L ++ ++
Sbjct: 313 GRGLAGWRTPFGPFGVSHTDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMEL 372
Query: 1441 VSNLVLYQYALSKGLQSYIQ--------------------------------ADRFAPSR 1468
V N L + GL + + F
Sbjct: 373 VRNEALNYLVQTLGLPQLAEFSNNLVAKSKTWADMYEEIVGSIFTGPNGIYGCEEFLAKT 432
Query: 1469 WAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYED---------------D 1513
+P D + ++ V + G + + D
Sbjct: 433 LMSPEHSKTVGSACPDAVTKA--SKR-VCMGEAGAHE-FRSLVDYACEQGISVFCSSRVS 488
Query: 1514 DMEDGELEGDSSS----YRVLSSKTLADVVEALIGVYYVEGGKDAANHL--MKWIGIQV- 1566
M L + + L + L G V D HL W+G
Sbjct: 489 TMFLERLRDIPAEDMLDWYRLGIQFSHR--SGLSGPGGVVSVIDIMTHLARGLWLGSPGF 546
Query: 1567 ----ESDPEEVGC-PSRPACVP------------------ESVLRSVDFHALEDALKIKF 1603
++D E C P+ P + S E L +
Sbjct: 547 YVEQQTDKNESACPPTIPVLYIYHRSVQCPVLYGSLTETPTGPVASKVLALYEKILAYES 606
Query: 1604 KDRGLLVEAITHAS----RPSSGVSC--------------YQRLEFVGDAVLDHLITKHL 1645
+ A T + SG YQ+LE +GDA L + HL
Sbjct: 607 SGGSKHIAAQTVSRSLAVPIPSGTIPFLIRLLQIALTPHVYQKLELLGDAFLKCSLALHL 666
Query: 1646 FFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEEL 1705
+ L G LT +R +A N R+ + V S Q
Sbjct: 667 HALHPTLTEGALTRMRQSAETNSVLGRLTKRFPSVVSEVIIESHPKIQPD---------- 716
Query: 1706 LKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDT--SVVWQVFQPLLD 1755
KV GD E+I AI L G + + V + P +
Sbjct: 717 ---------------SKVYGDTFEAILAAILLACGEEAAGAFVREHVLPQVV 753
|
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 1e-25
Identities = 33/240 (13%), Positives = 65/240 (27%), Gaps = 48/240 (20%)
Query: 1595 LEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPP 1654
+ ++H +QRLE +GDAVL ++T L + +
Sbjct: 310 QGRGRGLAGWRTPFGPFGVSH-------TDVFQRLELLGDAVLGFIVTARLLCLFPDASV 362
Query: 1655 GRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFG 1714
G L +L+ V NE + L ++ + +
Sbjct: 363 GTLVELKMELVRNEALNYLVQTLGLPQLAEFSNNLVAK---------------------- 400
Query: 1715 LGDCKAPKVLGDIVESIAGAIFLDSG---RDTSVVWQVFQPLLDPMVTPETLPMHPVREL 1771
K D+ E I G+IF + + T + V +
Sbjct: 401 ------SKTWADMYEEIVGSIFTGPNGIYGCEEFLAKTLMSPEHSK-TVGSACPDAVTKA 453
Query: 1772 QERCQQQAEGL-EYKASRSGNLA-----TVEVYIDGVQVGVAQNPQKKMAQKLAARNALA 1825
+R G E+++ + + + + A+ + L
Sbjct: 454 SKRVCMGEAGAHEFRSLVDYACEQGISVFCSSRVSTMFLERL---RDIPAEDMLDWYRLG 510
|
| >1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252 | Back alignment and structure |
|---|
Score = 160 bits (408), Expect = 3e-44
Identities = 62/264 (23%), Positives = 102/264 (38%), Gaps = 47/264 (17%)
Query: 1588 RSVDFHALEDALKIKFKDRGLLVEAITHAS-------RPSSGVSCYQRLEFVGDAVLDHL 1640
+ I FK+ LL A+ H+S V ++LEF+GDAVL+
Sbjct: 17 ERKIVEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELF 76
Query: 1641 ITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKE 1700
+ + L+ Y G L +++AA + E A V+ K L L G
Sbjct: 77 VCEILYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKG------------ 124
Query: 1701 VLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDT--SVVWQVFQPLLDPMV 1758
E G + +L D E++ AI+LD G + + Q F+ ++
Sbjct: 125 ---EEKTGGRDR--------DSILADAFEALLAAIYLDQGYEKIKELFEQEFEFYIE--- 170
Query: 1759 TPETLPMHPVR----ELQERCQQQAEGL-EYK-ASRSGN----LATVEVYIDGVQVGVAQ 1808
+ + + LQE Q + + EY N + VEV ++G + +
Sbjct: 171 --KIMKGEMLFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGK 228
Query: 1809 NPQKKMAQKLAARNALAVLKEKET 1832
KK A+K AAR A L ++ +
Sbjct: 229 GRTKKEAEKEAARIAYEKLLKERS 252
|
| >1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 8e-14
Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 11/117 (9%)
Query: 1353 RGAQRLPSIMRRVESMLLAIQLKDKINYPVPASKIL-EALT---------AASCQETFCY 1402
M E ++ + + + ++L AL A ++
Sbjct: 4 DKIHHHHHHMNESERKIVE-EFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESN 62
Query: 1403 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYI 1459
E+ E LGDA L+ V L+ KYP+ G L R++ S VL + L ++
Sbjct: 63 EKLEFLGDAVLELFVCEILYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFL 119
|
| >1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 1864 RRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLL 1923
+ P Y VR + F VRVN G + K+A+ AA +
Sbjct: 191 SEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIA---TGKG---RTKKEAEKEAARIAY 244
Query: 1924 ELLNK 1928
E L K
Sbjct: 245 EKLLK 249
|
| >2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221 | Back alignment and structure |
|---|
Score = 153 bits (390), Expect = 3e-42
Identities = 65/251 (25%), Positives = 105/251 (41%), Gaps = 42/251 (16%)
Query: 1591 DFHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYT 1650
LE L FKD+ LL +A+TH S S Y+ LEF+GDA+++ I L
Sbjct: 3 MLEQLEKKLGYTFKDKSLLEKALTHVS--YSKKEHYETLEFLGDALVNFFIVDLLVQYSP 60
Query: 1651 NLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGF 1710
N G L+ L+A ++ E F +A K +LH +R
Sbjct: 61 NKREGFLSPLKAYLISEEFFNLLAQKLELHKFIR-------------------------- 94
Query: 1711 NSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMVTPETLPMHPVR- 1769
G ++GD+ E++ A+++DSGRD + ++F L + +
Sbjct: 95 --IKRGKIN-ETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKD 151
Query: 1770 ---ELQERCQQQAEGL-EYK-ASRSGN----LATVEVYIDGVQVGVAQNPQKKMAQKLAA 1820
LQE Q++ + EY+ S G VE I + + + KK A++ AA
Sbjct: 152 YKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYR-TLGEGKSKKEAEQRAA 210
Query: 1821 RNALAVLKEKE 1831
+ +L+E E
Sbjct: 211 EELIKLLEESE 221
|
| >2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221 | Back alignment and structure |
|---|
Score = 72.9 bits (180), Expect = 4e-14
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 1373 QLKDKINYPVPASKILE-ALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEG 1431
QL+ K+ Y +LE ALT S + YE E LGDA + + + L P K EG
Sbjct: 6 QLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREG 65
Query: 1432 QLTRMRQQMVSNLVLYQYALSKGLQSYI 1459
L+ ++ ++S A L +I
Sbjct: 66 FLSPLKAYLISEEFFNLLAQKLELHKFI 93
|
| >2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 2e-05
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 1861 ICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAV 1920
I +R P YR + GP H K+F ++ + G S K+A+ AA
Sbjct: 159 ITQKRWKERPEYRLISVEGPHHKKKFIVEAKIK----EYRTLGEG---KSKKEAEQRAAE 211
Query: 1921 LLLELLNK 1928
L++LL +
Sbjct: 212 ELIKLLEE 219
|
| >3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248 | Back alignment and structure |
|---|
Score = 154 bits (392), Expect = 3e-42
Identities = 67/247 (27%), Positives = 112/247 (45%), Gaps = 34/247 (13%)
Query: 1591 DFHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYT 1650
+ LE +L +FKD+ LL+ A+TH S +RLEF+GDAVLD ++ ++LF +
Sbjct: 27 NIEKLEQSLTYEFKDKNLLIHALTHKS--FKKSYNNERLEFLGDAVLDLVVGEYLFHKFA 84
Query: 1651 NLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGF 1710
G L+ LRAA VN ++FA++A L + + E G
Sbjct: 85 KDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVA---------------EENNGGK 129
Query: 1711 NSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDT--SVVWQVFQPLLDPMVTPETLPMHPV 1768
P +L D +E+I GAI L++G + ++ ++ + + + L
Sbjct: 130 E--------KPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFP-QIDAKILIKDYK 180
Query: 1769 RELQERCQQQAEGL-EYK-ASRSGN----LATVEVYIDGVQVGVAQNPQKKMAQKLAARN 1822
+LQE Q + +Y+ G + + +DG ++ A KK AQ++AA+
Sbjct: 181 TKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKI 240
Query: 1823 ALAVLKE 1829
AL L
Sbjct: 241 ALEKLGA 247
|
| >3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 1e-13
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 1353 RGAQRLPSIMRRVESMLLAIQ-LKDKINYPVPASKIL-EALTAASCQETFCYERAELLGD 1410
G + + + I+ L+ + Y +L ALT S ++++ ER E LGD
Sbjct: 9 SGVDLGTENLYFQSNAMKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGD 68
Query: 1411 AYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYI 1459
A L VV +LF K+ + EG L+++R +V+ + A S L +I
Sbjct: 69 AVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFI 117
|
| >3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 7e-06
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 1861 ICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAV 1920
I + P Y VR GP H K+F A+ ++ + + S K+A+ AA
Sbjct: 186 ITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELA---RAIA---GSKKEAQQMAAK 239
Query: 1921 LLLELLNK 1928
+ LE L
Sbjct: 240 IALEKLGA 247
|
| >2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 2e-41
Identities = 73/261 (27%), Positives = 104/261 (39%), Gaps = 37/261 (14%)
Query: 1591 DFHALEDALKIKFKDRGLLVEAITHAS--RPSSGVSCYQRLEFVGDAVLDHLITKHLFFS 1648
L DAL + D LL A+TH S + G+ +RLEF+GDAVL IT LF
Sbjct: 6 SRQPLLDALGVDLPDE-LLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHR 64
Query: 1649 YTNLPPGRLTDLRAAAVNNENFARVA---VKHKLHVHLRHGSSALDRQIRDFVKEVLEEL 1705
+ + G L LRA+ VN + A VA L VH+ G E
Sbjct: 65 HPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRG---------------EA 109
Query: 1706 LKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDT--SVVWQVFQPLLDPMVTPETL 1763
G + +L D +ES+ GAI+L G + V+ ++F PLLD
Sbjct: 110 NTGGADK--------SSILADGMESLLGAIYLQHGMEKAREVILRLFGPLLD-AAPTLGA 160
Query: 1764 PMHPVRELQERCQQQAEGL-EYKASRSGN----LATVEVYIDGVQVGVAQNPQKKMAQKL 1818
+ LQE + G Y + +G T V + + G KK A++
Sbjct: 161 GLDWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQK 220
Query: 1819 AARNALAVLKEKETAEAKEKG 1839
AA A L+ + A +
Sbjct: 221 AAAAAWKALEVLDNAMPGKTS 241
|
| >2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 3e-13
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 1373 QLKDKINYPVPASKILEALTAASC----QETFCYERAELLGDAYLKWVVSRFLFLKYPQK 1428
L D + +P + ALT S ER E LGDA L ++ LF ++P +
Sbjct: 9 PLLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDR 68
Query: 1429 HEGQLTRMRQQMVSNLVLYQYA---LSKGLQSYI 1459
EG L ++R +V+ L A ++GL ++
Sbjct: 69 SEGDLAKLRASVVNTQALADVARRLCAEGLGVHV 102
|
| >2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 6e-04
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 1864 RRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLL 1923
R P Y V GP H K FT V V ++ G VG S K+A+ AA
Sbjct: 174 ARGLGAPSYL-VTSTGPDHDKEFTAVVVVMDSEYG---SGVG---RSKKEAEQKAAAAAW 226
Query: 1924 ELLNK 1928
+ L
Sbjct: 227 KALEV 231
|
| >2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana} Length = 102 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 3e-38
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 892 VSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFEKLEG 951
+S S++ +++ YCS+LP D + +PEF + ++ GG C++ LP NAP ++E
Sbjct: 1 ISGGSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDEFGG---TICRITLPANAPISEIES 57
Query: 952 PVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEQQEKVD 996
+ S A++ CL A +LH +G D LLPD + E D
Sbjct: 58 SLLPSTEAAKKDACLKAVHELHNLGVLNDFLLPDSKDEIEDELSD 102
|
| >3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 5e-37
Identities = 54/273 (19%), Positives = 89/273 (32%), Gaps = 42/273 (15%)
Query: 1595 LEDALKI-KFKDRGLLVEAITHAS---------RPSSGVSCYQRLEFVGDAVLDHLITKH 1644
++ +K D L A H S +RLEF+GD+ L L++
Sbjct: 88 VDMFIKYPVVYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYI 147
Query: 1645 LFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEE 1704
++ + + G L+ ++ + VNN N + K L+ +
Sbjct: 148 VYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQGNIA--------------TP 193
Query: 1705 LLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRD-----TSVVWQVFQPLLD---P 1756
K K D VE+ GA+ +D + ++ + L
Sbjct: 194 TRV--------VKDKMSKRYADCVEAYIGALVIDRFGTEFLDIKEWLEELSEKKLAKSSQ 245
Query: 1757 MVTPETLPMHPVRELQERCQQQAEGL--EYKASRSGNLATVEVYIDGVQVGVAQNPQKKM 1814
MV E L + EL E Q G Y+ VEV I + + A+ +
Sbjct: 246 MVIKEPLNKNAKNELAELLQINKLGHKLHYRKLTEMPPFRVEVKIGDILLDEAEGNSIRE 305
Query: 1815 AQKLAARNALAVLKEKETAEAKEKGDENGKKRK 1847
A+ AA L + + D N KK
Sbjct: 306 AEHRAAMKVLENDELLRKYSVYDLEDGNSKKYS 338
|
| >3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 3e-13
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 13/100 (13%)
Query: 1373 QLKDKINYPVPASKIL--EALT-----------AASCQETFCYERAELLGDAYLKWVVSR 1419
+ I YPV + L A + + ER E LGD++L +VS
Sbjct: 87 DVDMFIKYPVVYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSY 146
Query: 1420 FLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYI 1459
++ ++P +EG L++M++ +V+N L+ ++ +
Sbjct: 147 IVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRL 186
|
| >3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* Length = 170 | Back alignment and structure |
|---|
Score = 119 bits (302), Expect = 4e-31
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 27/167 (16%)
Query: 1591 DFHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYT 1650
+ LE +L +FKD+ LL+ A+TH S +RLEF+GDAVLD ++ ++LF +
Sbjct: 27 NIEKLEQSLTYEFKDKNLLIHALTHKS--FKKSYNNERLEFLGDAVLDLVVGEYLFHKFA 84
Query: 1651 NLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGF 1710
G L+ LRAA VN ++FA++A L + + E G
Sbjct: 85 KDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVA---------------EENNGGK 129
Query: 1711 NSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTS--VVWQVFQPLLD 1755
P +L D +E+I GAI L++G + + + ++ +
Sbjct: 130 E--------KPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFP 168
|
| >3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* Length = 170 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 2e-14
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 1353 RGAQRLPSIMRRVESMLLAIQ-LKDKINYPVPASKILE-ALTAASCQETFCYERAELLGD 1410
G + + + I+ L+ + Y +L ALT S ++++ ER E LGD
Sbjct: 9 SGVDLGTENLYFQSNAMKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGD 68
Query: 1411 AYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYI 1459
A L VV +LF K+ + EG L+++R +V+ + A S L +I
Sbjct: 69 AVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFI 117
|
| >3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora} Length = 246 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 1e-25
Identities = 33/176 (18%), Positives = 62/176 (35%), Gaps = 37/176 (21%)
Query: 1595 LEDALKI-KFKDRGLLVEAITHAS---------RPSSGVSCYQRLEFVGDAVLDHLITKH 1644
++ +K D L A H S +RLEF+GD+ L L++
Sbjct: 88 VDMFIKYPVVYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYI 147
Query: 1645 LFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEE 1704
++ + + G L+ ++ + VNN N + K L+ + R ++D
Sbjct: 148 VYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQGNIATPTRVVKD-------- 199
Query: 1705 LLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLD---SGRDTSVVW--QVFQPLLD 1755
K K D V++ GA+ +D + W ++ + L
Sbjct: 200 --------------KMSKRYADCVQAYIGALVIDRFGTEFLDIKEWLEELSEKKLA 241
|
| >3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora} Length = 246 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 2e-14
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 13/100 (13%)
Query: 1373 QLKDKINYPVPASKIL--EALT-----------AASCQETFCYERAELLGDAYLKWVVSR 1419
+ I YPV + L A + + ER E LGD++L +VS
Sbjct: 87 DVDMFIKYPVVYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSY 146
Query: 1420 FLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYI 1459
++ ++P +EG L++M++ +V+N L+ ++ +
Sbjct: 147 IVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRL 186
|
| >3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* Length = 124 | Back alignment and structure |
|---|
Score = 86.9 bits (215), Expect = 4e-20
Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 23/115 (20%)
Query: 1234 DLEGRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIF 1293
+L G +V ++ K + V+ I ++ +S+F + +G S+ +YY+++Y E+
Sbjct: 27 ELIGLVVLTKYNNKTYRVDDIDWDQNPKSTFKKADG-----SEVSFLEYYRKQYNQEITD 81
Query: 1294 KKQPLIRGRGVSYCKNLLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHPLP 1348
KQP++ + R G L PELC++ L
Sbjct: 82 LKQPMLVSQP--------KRRRGPGGTLPGP----------AMLIPELCYLTGLT 118
|
| >2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} Length = 150 | Back alignment and structure |
|---|
Score = 86.2 bits (213), Expect = 2e-19
Identities = 25/131 (19%), Positives = 51/131 (38%), Gaps = 23/131 (17%)
Query: 1234 DLEGRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIF 1293
+L G IV ++ K + V+ I ++ +S+F + +G S+ +YY+++Y E+
Sbjct: 28 ELIGLIVLTKYNNKTYRVDDIDWDQNPKSTFKKADG-----SEVSFLEYYRKQYNQEITD 82
Query: 1294 KKQPLIRGRGVSYCKNLLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHPLPGSLVR 1353
KQP++ + + G L PELC++ L +
Sbjct: 83 LKQPVLVSQP------------KRRRGPGGTLPGP------AMLIPELCYLTGLTDKMRN 124
Query: 1354 GAQRLPSIMRR 1364
+ +
Sbjct: 125 DFNVMKDLAVH 135
|
| >3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A Length = 148 | Back alignment and structure |
|---|
Score = 83.6 bits (206), Expect = 1e-18
Identities = 21/118 (17%), Positives = 47/118 (39%), Gaps = 22/118 (18%)
Query: 1234 DLEGRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIF 1293
L G IV ++ + + ++ + + T + SF +G + ++ +YY + YG+ +
Sbjct: 27 LLVGNIVITRYNNRTYRIDDVDWNKTPKDSFTMSDG-----KEITFLEYYSKNYGITVKE 81
Query: 1294 KKQPLIRGRGVSYCKNLLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHPLPGSL 1351
+ QPL+ + + + + L PEL F+ +P +
Sbjct: 82 EDQPLL----IHRPSERQDNHGMLLKGE-------------ILLLPELSFMTGIPEKM 122
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Length = 237 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 4e-14
Identities = 38/168 (22%), Positives = 56/168 (33%), Gaps = 34/168 (20%)
Query: 305 RPYQLDVLEQAKKKNT-IAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPL 363
R YQ LE+ L TG+GKT +A+ I + + L +VP + L
Sbjct: 95 RDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-------STPTL--IVVPTLAL 145
Query: 364 VYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIK 423
Q E + VG + G R + K + V T ++
Sbjct: 146 AEQWKERLGIFGEEYVGEFSG-------------RIKELKPLTVSTYDSA---YVNAEKL 189
Query: 424 MEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471
LLI DE HH + Y + P G+TA+
Sbjct: 190 GNRFMLLIFDEVHH-LPAESYVQIA-------QMSIAPFRLGLTATFE 229
|
| >1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 4e-14
Identities = 33/178 (18%), Positives = 62/178 (34%), Gaps = 22/178 (12%)
Query: 1760 PETLPMHPVRELQERCQQQAEGLEYKA-SRSG----NLATVEVYIDGVQVGVAQNPQKKM 1814
+ + EL Q+Q L+Y+ SG T +V IDG + + KK
Sbjct: 8 GDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKE 67
Query: 1815 AQKLAARNALAVLKEKETAEAKEKGDENGKKRKNGTQTFTRQTLNDICLRRNWPMPLYRC 1874
A+ AA+ A+ +L +++ A + + +N I ++ + Y
Sbjct: 68 AKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYI-GLINRIAQKKRLTVN-YEQ 125
Query: 1875 VREGGPAHAKRFTYAVRVN----TTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928
G + F Y ++ + G + ++AK AA L +
Sbjct: 126 CASGVH-GPEGFHYKCKMGQKEYSIGTG----------STKQEAKQLAAKLAYLQILS 172
|
| >1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 3e-08
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 1858 LNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPM-PSVKKAKD 1916
LN ++ + Y+ + GP H +RFT+ V ++ E S K+AK+
Sbjct: 19 LNTYRQKQGVVLK-YQELPNSGPPHDRRFTFQVIID-------GREFPEGEGRSKKEAKN 70
Query: 1917 SAAVLLLELLNKWY 1930
+AA L +E+LNK
Sbjct: 71 AAAKLAVEILNKEK 84
|
| >1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 7e-07
Identities = 12/75 (16%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 1765 MHPVRELQERCQQQAEGLEYKASRSGNLA----TVEVYIDGVQVGVAQNPQKKMAQKLAA 1820
+ + + Q++ + Y+ SG + + + + K+ A++LAA
Sbjct: 104 GNYIGLINRIAQKKRLTVNYEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAA 163
Query: 1821 RNALAVLKEKETAEA 1835
+ A + +ET
Sbjct: 164 KLAYLQILSEETGSG 178
|
| >2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} Length = 232 | Back alignment and structure |
|---|
Score = 72.9 bits (178), Expect = 4e-14
Identities = 35/183 (19%), Positives = 63/183 (34%), Gaps = 29/183 (15%)
Query: 1766 HPVRELQERCQQQAEGLEY----KASRSGNLATVEVYIDGVQVGVAQNPQKKMAQKLAAR 1821
V L E Q+ + + V IDGV G KK+A+ AAR
Sbjct: 23 SEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAAR 82
Query: 1822 NALAVLKEKETAEAKEKGDENGKKRKNGTQ-TFTRQTLNDI---------------CLRR 1865
L +L + E+ ++ ++ + + + ++ CL+R
Sbjct: 83 ATLEILIPDFVKQTSEEKPKDSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHECLKR 142
Query: 1866 NWPMPLYRCVREGGPAHAKRFTYAVRV-NTTDKGWTDECVGEPMPSVKKAKDSAAVLLLE 1924
N M E P ++ Y + T +GW + + K A+ +L+
Sbjct: 143 NHGMGDTSIKFEVVPGKNQKSEYVMACGKHTVRGWC--------KNKRVGKQLASQKILQ 194
Query: 1925 LLN 1927
LL+
Sbjct: 195 LLH 197
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 9e-13
Identities = 54/283 (19%), Positives = 89/283 (31%), Gaps = 53/283 (18%)
Query: 305 RPYQLDVLEQAKKKNT-IAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPL 363
R YQ LE+ L TG+GKT +A+ I + + +VP + L
Sbjct: 95 RDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAIN-------ELSTP--TLIVVPTLAL 145
Query: 364 VYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIK 423
Q E + VG + G R + K + V T ++
Sbjct: 146 AEQWKERLGIFGEEYVGEFSG-------------RIKELKPLTVSTYDSA---YVNAEKL 189
Query: 424 MEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCA 483
LLI DE HH + + P G+TA+ G
Sbjct: 190 GNRFMLLIFDEVHHLPAE--------SYVQIAQMSIAPFRLGLTATFEREDG-------- 233
Query: 484 IKICNLESKLDSVVCTIKDRKELEKH----------VPMPSEVVVEYDKAASLWSLHEQL 533
+ L+ + V + KH VP+ + VEY+K ++ +
Sbjct: 234 -RHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRA 292
Query: 534 KQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSER 576
+ + + E S + A EE R++ S+
Sbjct: 293 RGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKN 335
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 2e-06
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 23/119 (19%)
Query: 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEM 764
K++ L +IL ++ + IIF + KVF I H S+E
Sbjct: 336 KIRKLREILERH---RKDKIIIFTRHNELVYRISKVF----------LIPAITHRTSREE 382
Query: 765 RTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLA---KTVLAYIQSRGR 820
R +E + FR GR +V++ V +EG+D+ NV + + + YIQ GR
Sbjct: 383 R----EEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGV---IMSGSGSAREYIQRLGR 434
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 3e-12
Identities = 91/670 (13%), Positives = 202/670 (30%), Gaps = 207/670 (30%)
Query: 381 HYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKM----EAINLLI---LD 433
+ ++ F DA + FD K V M IL II L L
Sbjct: 16 YQYKDILSVFEDA--FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 434 ECHHAVK-------KHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKI 486
+ V+ + Y +MS T ++ PS+ + Q D ++
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSP-IKTEQRQ--PSM--------MTRMYIEQRD---RL 119
Query: 487 CNLESKLDSVVCTIKDRKELEK-HVPMPSEVVVEYDKAASLWSLHEQLKQME----VAVE 541
N D + K +V L + L ++ V ++
Sbjct: 120 YN-------------DNQVFAKYNVSRLQPY----------LKLRQALLELRPAKNVLID 156
Query: 542 ------------EAAQSSSRRSK------WQFMGARDAGAKEELRQVYGVSER------T 577
+ S + K W + ++ + L + + + +
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS-PETVLEMLQKLLYQIDPNWTS 215
Query: 578 ESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKV 637
SD ++N+ ++ +I L L + Y+ L L +V +K
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENC---LLVL--L-------NV-----QNAKA 258
Query: 638 VSL--LQCELVEGAVSKKDAKVVDSENG------FVEGGTNEIEEGELLD---------- 679
+ L C+++ ++ + +V D + ++ + + E+
Sbjct: 259 WNAFNLSCKIL---LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 680 ----SHVVSGGEHVDVIIGAAVADGKVT---------PKVQSLIKILLKYQHTEDFRAI- 725
V++ II ++ DG T K+ ++I+ L ++R +
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 726 ----IFVERV-VAALVLPKVFAELPSL-------SFVKSASLIGHNNSQEMRTFQMQETI 773
+F + ++L ++ ++ K + + + +
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY--- 432
Query: 774 AKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVL-AYIQSRGR----ARKPGSD- 827
L+++ + + L ++++ Y + P D
Sbjct: 433 --------------------LELK-VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 828 YILMIERGNLSHATF-LRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAVPGTVYQVE 886
Y SH L+N + E + D L+ ++
Sbjct: 472 YF-------YSHIGHHLKNIEHPERMTLFRMV-FLDFRFLE--QKIRHDST--------- 512
Query: 887 STGAVVSLNSAVGLIHFY----CSQLPS-DRY--SILRPEFIMERHEKPGGPTEYSCKLQ 939
+ A S+ + + + FY C P +R +IL +F+ + E+ ++Y+ L+
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL--DFLP-KIEENLICSKYTDLLR 569
Query: 940 LPCNAPFEKL 949
+ A E +
Sbjct: 570 IALMAEDEAI 579
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 67.2 bits (163), Expect = 5e-11
Identities = 91/637 (14%), Positives = 185/637 (29%), Gaps = 187/637 (29%)
Query: 1307 CKNLLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHPLPGSLVRGAQRLPSIMRRVE 1366
K++L FE + + +++ D + E+ I ++ RL + +
Sbjct: 18 YKDIL-SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG-TLRLFWTLLSKQ 75
Query: 1367 SMLLAIQLKD--KINYPVPASKI-LEALTAASCQETFCYERAELLGD--AYLKWVVSRFL 1421
++ +++ +INY S I E + + +R L D + K+ VSR
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR-- 133
Query: 1422 FLKYPQKHEGQLTRMRQQM--VSNLVLY------------QYALSKGLQS---------- 1457
Q + +L + ++ N+++ LS +Q
Sbjct: 134 ----LQPYL-KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 1458 -----------------YIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDK 1500
Q D SR + + + L +
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP------ 242
Query: 1501 LGTDKNYNEYED-----DDMEDGE-LEG-DSSSYRVLSSKTL-----ADVVEALIGVYYV 1548
YE+ ++++ + + LS K L V + L
Sbjct: 243 ---------YENCLLVLLNVQNAKAWNAFN------LSCKILLTTRFKQVTDFLSAATTT 287
Query: 1549 E-------GG---KDAANHLMKWIGIQVESDPEEVGCPSRP---ACVPESVLRSVDFHAL 1595
+ + L+K++ + + P EV + P + + ES +R D A
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV-LTTNPRRLSIIAES-IR--DGLAT 343
Query: 1596 EDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSY------ 1649
D K D+ L I S VL+ + +F
Sbjct: 344 WDNWKHVNCDK--LTTIIE---------SSLN--------VLEPAEYRKMFDRLSVFPPS 384
Query: 1650 TNLPPGRLTDL-----------------RAAAVNNENFARVAVKHKLHVHLRH---GSSA 1689
++P L+ + + + V + +++ L+ A
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 1690 LDRQIRDFVKEV----LEELLKPG-----FNSFG--LGDCKAPKVLGDIVESIAGAIFLD 1738
L R I D ++L+ P ++ G L + + + + +FLD
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE----HPERMTLFR-MVFLD 499
Query: 1739 SG------RDTSVVWQVFQPLLDPMVTPET-----LPMHPVRELQERCQQQAEGLEYKAS 1787
R S W +L+ + + P E L++
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN-----AILDFLPK 554
Query: 1788 RSGNLATVEVYIDGVQVGVAQNPQK---KMAQKLAAR 1821
NL + Y D +++ + + + A K R
Sbjct: 555 IEENLICSK-YTDLLRIAL-MAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 67.2 bits (163), Expect = 5e-11
Identities = 98/639 (15%), Positives = 187/639 (29%), Gaps = 216/639 (33%)
Query: 1054 ISKDPFLTQVSDF--AVLFSSELDAELASLKNFHV---RLMSIVLDVDVEPYTTPWDPAK 1108
+ V D ++L E+D + K+ RL +L E
Sbjct: 29 FVDNFDCKDVQDMPKSILSKEEID-HIIMSKDAVSGTLRLFWTLLSKQEEMV-------- 79
Query: 1109 AYLFVPVVSDKSVDPMNELDWDLVEKITKTDAWTNPLQRARP-DVYLGTNERTLGGDRRE 1167
FV + V +N + L+ I T Q + +Y+ +R ++
Sbjct: 80 -QKFV-----EEVLRIN-YKF-LMSPIK-----TEQRQPSMMTRMYIEQRDRLYNDNQV- 125
Query: 1168 YGFGKL---RHGMAFGQKSHPTYGIRGAIAQFDVVKASGLVPDREAMQIHNADMP-TGK- 1222
F K R P +R A+ + A ++ I + +GK
Sbjct: 126 --FAKYNVSRL--------QPYLKLRQALLELR--PAKNVL-------IDG--VLGSGKT 164
Query: 1223 LMMADSCANAGDLEGRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGPLE--YSSYA 1280
+ D C + V K F++ +++ + E+ + L ++ ++S +
Sbjct: 165 WVALDVCLSYK------VQCKMDFKIFWL-NLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 1281 DYYKQ--------KYGVELIFKKQPLIRG----RGVSY----------CKNLLSPRF--- 1315
D+ + + + K +P V CK LL+ RF
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 1316 --------------EHSEE--QEGEGEEILDKTYYVF-----LPPELCFIHPLPGSLVRG 1354
+H E + +L K Y+ LP E+ +P S++
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLK--YLDCRPQDLPREVLTTNPRRLSII-- 333
Query: 1355 AQRLPSIMRRVE--SMLLAIQLKDKINYPVPASKILEALTAASCQETFCYER-------- 1404
A+ + + + + +L I L L A ++ ++R
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTII------ESSLNVLEPAEYRK--MFDRLSVFPPSA 385
Query: 1405 ---AELLGDAYLKWV--------------VSRFLFLKYPQK-----HEGQLTRMRQQMVS 1442
LL L W L K P++ L ++ ++ +
Sbjct: 386 HIPTILLS---LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL-ELKVKLEN 441
Query: 1443 NLVLY-----QYALSKGLQ--------------SYI--------QADRFA--PS-----R 1468
L+ Y + K S+I +R R
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 1469 WAAPGVLPVFDEDTK-DGDSSLFDQEKSVAEDKLGTDKNYNEY-EDDDMEDGELEGD--- 1523
+ + K DS+ ++ S+ + L K Y Y D+D + L
Sbjct: 502 FL----------EQKIRHDSTAWNASGSIL-NTLQQLKFYKPYICDNDPKYERLVNAILD 550
Query: 1524 ---SSSYRVLSSKTLADVVE-ALI---GVYYVEGGKDAA 1555
++ SK D++ AL+ + E K
Sbjct: 551 FLPKIEENLICSKYT-DLLRIALMAEDEAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.6 bits (159), Expect = 1e-10
Identities = 93/634 (14%), Positives = 187/634 (29%), Gaps = 153/634 (24%)
Query: 15 ESNQSSYWLDACEDIL---IDEFV-NFDTSVVQDSVDNT-SNQDSLSNDFFGGIDHILDS 69
E+ + Y +DIL D FV NFD VQD + S ++ IDHI+ S
Sbjct: 10 ETGEHQY---QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE---------IDHIIMS 57
Query: 70 IKNGSGLPNSNGNLLKNGSE------------------DSTGGENHQAEGLIL------- 104
SG LL E E Q +
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 105 -LSNNGS--DKDGVDR-------KRKLENCENVNGYLVNGKAG-GR-------LSDHFTK 146
L N+ K V R ++ L L++G G G+ + +
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 147 ---ENGVHRDNGNNDHEASRIRDFDSEDRFSKRARVSVCKNESQYSSRGQYCSSDKD--- 200
+ + N N + + + + + + S+ S +
Sbjct: 178 CKMDFKIFWLNLKNCNSPETV--LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 201 RVFGRKRLRD----LDDIGRRDRDPMRRREHYNGSSRKDV--RDKDFRDREPRGYWERDR 254
R+ K + L ++ ++ + +N S + + R K D
Sbjct: 236 RLLKSKPYENCLLVLLNV----QNA-KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 255 LGSNGMVFRLGSWEADHNRAGKE--ANGINQECNGKVGKKSEAKEKMPEE--QARPYQLD 310
L + M K ++ + +P E P +L
Sbjct: 291 LDHHSMTL--------TPDEVKSLLLKYLDCRP-----------QDLPREVLTTNPRRLS 331
Query: 311 VLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDL----QRQNKKMLAVFLVPK-VPL 363
++ ++ + T + L + I S N L R+ L+VF P +
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTI--IESSLNVLEPAEYRKMFDRLSVF--PPSAHI 387
Query: 364 VYQQAEVI-REQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQV----LVMTAQILLNILR 418
+I + V ++ + ++ +E T + L + ++
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKL-HKYSLVEKQPKES-TISIPSIYLELKVKLENEYAL 445
Query: 419 HSIIKMEAINLLILDECHHAVKKHP----YSLVMSEFYHTTSKEKRPSVFGMTASPVNLK 474
H I ++ N+ + + + YS + +H + E + ++ +
Sbjct: 446 HRSI-VDHYNIPKTFDSDDLIPPYLDQYFYSHIG---HHLKNIEHPERMTLFRMVFLDFR 501
Query: 475 GVSSQVDCAIKICNLESKLD---SVVCTIKDRKELEKHV----PMPSEVVVEYDK----- 522
+ KI + + + S++ T++ K + ++ P +V
Sbjct: 502 FLEQ------KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI 555
Query: 523 -AASLWSLHEQLKQM------EVAVEEAAQSSSR 549
+ S + L ++ E EEA + R
Sbjct: 556 EENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 8e-10
Identities = 80/619 (12%), Positives = 176/619 (28%), Gaps = 184/619 (29%)
Query: 193 QYCSSDKDRVFGRKRLRDLD--DIGRRDRDPMRRREHYNGSSRKDVRD----KDFRDREP 246
QY D VF + + D D+ +D + + S++++ KD
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDV----QDMPK-----SILSKEEIDHIIMSKDAVSGTL 65
Query: 247 RGYWERDRLGSNGM-VFRLGSWEADHNRAGKEANGINQECNGKVGKK---SEAKEKM--- 299
R +W + F ++ + I E E ++++
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFL---MSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 300 -----PEEQARPYQLDVLEQA---KKKNTIAFLE--TGAGKTLIAVLLIRSICNDLQRQN 349
+R L QA + ++ G+GKT +A+ +C + Q
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL----DVCLSYKVQC 178
Query: 350 KKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMT 409
K +F + + V+ ++ ++ R + K +
Sbjct: 179 KMDFKIFWL-NLKNCNSPETVLEMLQ-----KLLYQIDPNW--TSRSDHSSNIKLRIHSI 230
Query: 410 AQILLNILRHSIIKMEAINLLILDE-------------C--------------------- 435
L +L+ K LL+L C
Sbjct: 231 QAELRRLLKS---KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 436 HHAVKKHPYSLVMSE----F--YHTTSKEKRP-----------SVFG-----MTASPVNL 473
H ++ H +L E Y + P S+ A+ N
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 474 KGV-SSQVDCAIKIC--NLESKLDSVVCTIKDR-KEL---EKHVPMPSEVVVEYDKAASL 526
K V ++ I+ LE + L +P+ ++ +
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAE------YRKMFDRLSVFPPSAHIPTILLS------LI 395
Query: 527 WSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGV--SERTESDGAAN 584
W ++ V + S + + KE + + + + +
Sbjct: 396 WF-----DVIKSDVMVVVNKLHKYS----LVEKQ--PKESTISIPSIYLELKVKLENEYA 444
Query: 585 LIQKLRAINYALGELGQWCAYKVAQSF------------LTALQNDERAN-----YQLDV 627
L + + +Y + + + + + + L +++ ER + LD
Sbjct: 445 LHRSIVD-HYNIPK--TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF-LDF 500
Query: 628 KFQESYLSKVVS-----------LLQCELVEGAVSKKDAK---VVDSENGFVEGGTNEIE 673
+F E + + L Q + + + D K +V++ F+ IE
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK----IE 556
Query: 674 EGELLDSHVVSGGEHVDVI 692
E +++ ++ D++
Sbjct: 557 E------NLIC-SKYTDLL 568
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 9e-05
Identities = 46/283 (16%), Positives = 92/283 (32%), Gaps = 79/283 (27%)
Query: 1584 ESVLRSVDFHALEDALKIKFKDRGL--LVEAITHASRP--------SSGVSCYQRLEFVG 1633
++ + + D ++D K + ++ + S S Q+ FV
Sbjct: 27 DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK--FVE 84
Query: 1634 DAV-LDH--LITKHLFFSYTNLPPGRLTDLRAAAVN-----NENFARVAV-KHKLHVHLR 1684
+ + +++ L++ P +T + + N+ FA+ V + + ++ LR
Sbjct: 85 EVLRINYKFLMSP---IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 1685 HGSSALDRQIRDFVKEVLEELLKPGFNSF--GLGDC-K---APKVLGD--IVESIAGAIF 1736
+ L E L+P N G+ K A V + + IF
Sbjct: 142 ---------------QALLE-LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 1737 -LDSGRDTSVVWQVFQPLLDPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNLATV 1795
L+ S PET+ LQ+ Q ++ S N+
Sbjct: 186 WLNLKNCNS---------------PETVLEM----LQKLLYQIDPNWTSRSDHSSNI--- 223
Query: 1796 EVYIDGVQVGVAQNPQKKMAQKLAARNALAVL---KEKETAEA 1835
++ I +Q ++ + K N L VL + + A
Sbjct: 224 KLRIHSIQ----AELRRLLKSKP-YENCLLVLLNVQNAKAWNA 261
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 6e-04
Identities = 46/341 (13%), Positives = 90/341 (26%), Gaps = 119/341 (34%)
Query: 1677 HKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCK----------APKVLGD 1726
H H H+ + Q +D + + + +F DCK + + +
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVD----NF---DCKDVQDMPKSILSKEEIDH 53
Query: 1727 IVES---IAGA-----IFLDSGRDTSVVWQVFQPLLDP----MVTPETLPMHPVRELQER 1774
I+ S ++G L +V + + +L +++P ++
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQ--EEMVQKFVEEVLRINYKFLMSP----------IKTE 101
Query: 1775 CQQQA-EGLEYKASRSGNLATVEVYIDGVQVGVAQNPQKKMAQKLAARNAL--------- 1824
+Q + Y R +V+ V + + KL R AL
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKY-NV-----SRLQPYLKL--RQALLELRPAKNV 153
Query: 1825 ---------------AVLKEKETAEAKEKG--------------------------DENG 1843
V + + D N
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 1844 KKRKNGTQTFTRQTLNDIC--LRRNWPMPLY-RC------VREGGPAHAKRFTYAVR--V 1892
R + + + ++ I LRR Y C V+ F + + +
Sbjct: 214 TSRSDHSSN-IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAFNLSCKILL 270
Query: 1893 NTTDKGWTDECVGEPMPSVKKAKDSAAVL----LLELLNKW 1929
T K TD + + + L + LL K+
Sbjct: 271 TTRFKQVTDF-LSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 7e-12
Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 16/135 (11%)
Query: 306 PYQLDVLEQA--KKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPL 363
P Q + +++ + + TG+GKTLIA + I + L + K A+++ P L
Sbjct: 33 PPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGI---ISFLLKNGGK--AIYVTPLRAL 87
Query: 364 VYQQAEVIR--EQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSI 421
++ + E G+ V G+ D +++ T + L ++ RH
Sbjct: 88 TNEKYLTFKDWELIGFKVAMTSGDYDTD-------DAWLKNYDIIITTYEKLDSLWRHRP 140
Query: 422 IKMEAINLLILDECH 436
+ +N +LDE H
Sbjct: 141 EWLNEVNYFVLDELH 155
|
| >3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} Length = 88 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 1e-11
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 1858 LNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDS 1917
L ++ +++ W +P Y +E GPAH K FT RV + + G S K AK +
Sbjct: 21 LQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE----RFIEIGSG---TSKKLAKRN 73
Query: 1918 AAVLLLELLNK 1928
AA +L ++
Sbjct: 74 AAAKMLLRVHT 84
|
| >3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} Length = 88 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 6e-06
Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 10/85 (11%)
Query: 1751 QPLLDPMVTPETLPMHPVRELQERCQQQAEGL-EYKASRSGNLA-----TVEVYIDGVQV 1804
+V H V LQE Q+ L EY ++ A T+ ++ +
Sbjct: 4 HHHSSGLVPR---GSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-I 59
Query: 1805 GVAQNPQKKMAQKLAARNALAVLKE 1829
+ KK+A++ AA L +
Sbjct: 60 EIGSGTSKKLAKRNAAAKMLLRVHT 84
|
| >1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A Length = 76 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 2e-11
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Query: 1858 LNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKK-AKD 1916
+++I ++RN ++ +RE GPAH K F A V V E + KK +K
Sbjct: 13 VHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVG--------SIVTEGEGNGKKVSKK 63
Query: 1917 SAAVLLLELLNK 1928
AA +L L K
Sbjct: 64 RAAEKMLVELQK 75
|
| >1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A Length = 76 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-05
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 6/74 (8%)
Query: 1761 ETLPMHPVRELQERCQQQAEGLEYK-ASRSGNLA----TVEVYIDGVQVGVAQNPQKKMA 1815
E P+ ++ E ++ + +K G + V + KK++
Sbjct: 3 EGDKKSPISQVHEIGIKRNMTVHFKVLREEGPAHMKNFITACIVGS-IVTEGEGNGKKVS 61
Query: 1816 QKLAARNALAVLKE 1829
+K AA L L++
Sbjct: 62 KKRAAEKMLVELQK 75
|
| >1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 89 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 3e-11
Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 7/71 (9%)
Query: 1858 LNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDS 1917
L I R P Y + E G + F V+V G P+ K AK +
Sbjct: 12 LAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVG----NEVATGTG---PNKKIAKKN 64
Query: 1918 AAVLLLELLNK 1928
AA +L L
Sbjct: 65 AAEAMLLQLGY 75
|
| >1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 89 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 4e-07
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Query: 1764 PMHPVRELQERCQQQAEGL-EYK-ASRSG----NLATVEVYIDGVQVGVAQNPQKKMAQK 1817
P+ L + Q + E +Y S G ++V + +V P KK+A+K
Sbjct: 5 SSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGN-EVATGTGPNKKIAKK 63
Query: 1818 LAARNALAVLKEKETAEAKEKGDENG 1843
AA L L K + ++ G +G
Sbjct: 64 NAAEAMLLQLGYKASTSLQDSGPSSG 89
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 4e-11
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 16/135 (11%)
Query: 306 PYQLDVLEQA--KKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPL 363
P Q + L+ + KN + + T +GKTLIA + + + + Q K AV++VP L
Sbjct: 26 PPQAEALKSGILEGKNALISIPTASGKTLIAEIAM---VHRILTQGGK--AVYIVPLKAL 80
Query: 364 VYQQAEVIR--EQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSI 421
++ + + E+ G V G+ +++ TA+ ++LRH
Sbjct: 81 AEEKFQEFQDWEKIGLRVAMATGDYDSK-------DEWLGKYDIIIATAEKFDSLLRHGS 133
Query: 422 IKMEAINLLILDECH 436
++ + +L+ DE H
Sbjct: 134 SWIKDVKILVADEIH 148
|
| >2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 89 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 1e-10
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 1858 LNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDS 1917
L ++ +++ W +P Y +E GPAH K FT RV + + G S K AK +
Sbjct: 22 LQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE----RFIEIGSG---TSKKLAKRN 74
Query: 1918 AAVLLLELLNK 1928
AA +L ++
Sbjct: 75 AAAKMLLRVSG 85
|
| >2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 89 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 3e-06
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 1758 VTPETLPMHPVRELQERCQQQAEGL-EYK-ASRSG----NLATVEVYIDGVQVGVAQNPQ 1811
V+P+ +PV LQE Q+ L EY SG T+ ++ + +
Sbjct: 9 VSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTS 67
Query: 1812 KKMAQKLAARNALAVLKEK 1830
KK+A++ AA L +
Sbjct: 68 KKLAKRNAAAKMLLRVSGP 86
|
| >2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 97 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 1e-10
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 1841 ENGKKRKNGTQTFTRQTLNDIC-LRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGW 1899
+G + + +N + L + P Y+ + + GP HA FT +V V+ G
Sbjct: 2 SSGSSGRKILDSKAIDLMNALMRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVD----GT 57
Query: 1900 TDECVGEPMPSVKKAKDSAAVLLLELLN 1927
T E G PS K AK AV +L+ +
Sbjct: 58 TYEASG---PSKKTAKLHVAVKVLQAMG 82
|
| >2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 97 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 9e-05
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 1764 PMHPVRELQERCQQQAEGLEYK-ASRSG----NLATVEVYIDGVQVGVAQNPQKKMAQKL 1818
M+ + L + GL+YK S+SG + T+ V +DG A P KK A+
Sbjct: 18 LMNALMRLNQIRP----GLQYKLLSQSGPVHAPVFTMSVDVDG-TTYEASGPSKKTAKLH 72
Query: 1819 AARNALAVLKEKETAEAKEKGDENG 1843
A L + +A G +G
Sbjct: 73 VAVKVLQAMGYPTGFDADISGPSSG 97
|
| >1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 Length = 69 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 2e-10
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 1858 LNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDS 1917
L ++ +++ W +P Y +E GP H + FT RV + + G S + AK
Sbjct: 6 LQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVE----TFVETGSG---TSKQVAKRV 58
Query: 1918 AAVLLLELL 1926
AA LL
Sbjct: 59 AAEKLLTKF 67
|
| >1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 Length = 69 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 1e-04
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 1767 PVRELQERCQQQAEGL-EYK-ASRSGNLA-----TVEVYIDGVQVGVAQNPQKKMAQKLA 1819
PV LQE Q+ L EY A SG T+ ++ V K++A+++A
Sbjct: 2 PVGSLQELAVQKGWRLPEYTVAQESG-PPHKREFTITCRVETF-VETGSGTSKQVAKRVA 59
Query: 1820 ARNALAVLK 1828
A L K
Sbjct: 60 AEKLLTKFK 68
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 3e-10
Identities = 30/135 (22%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 306 PYQLDVLEQA-KKKNTIAFLETGAGKTLIAVLLI-RSICNDLQRQNKKMLAVFLVPKVPL 363
P Q + +E+ KN + + T AGKTL+A + + R + K ++++VP L
Sbjct: 28 PPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREA-----IKGGK--SLYVVPLRAL 80
Query: 364 VYQQAEVIR--EQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSI 421
++ E + E+ G +G G+ ++V T++ +++R+
Sbjct: 81 AGEKYESFKKWEKIGLRIGISTGDYESR-------DEHLGDCDIIVTTSEKADSLIRNRA 133
Query: 422 IKMEAINLLILDECH 436
++A++ L++DE H
Sbjct: 134 SWIKAVSCLVVDEIH 148
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Length = 185 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 5e-10
Identities = 37/125 (29%), Positives = 52/125 (41%), Gaps = 16/125 (12%)
Query: 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEM 764
K L+ +L +D ++FVE A L + S+ G + SQ
Sbjct: 32 KRSFLLDLLNA--TGKDSLTLVFVETKKGADSL----EDFLYHEGYACTSIHG-DRSQRD 84
Query: 765 RTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSR----GR 820
R + + FR G+ +LVAT+VA GLDI VI FDL + Y+ R GR
Sbjct: 85 REEALHQ----FRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVH-RIGRTGR 139
Query: 821 ARKPG 825
G
Sbjct: 140 VGNLG 144
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 6e-10
Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 22/127 (17%)
Query: 705 KVQSLIKILLKYQHTEDFRAIIFVE--RVVAALVLPKVFAELPSLSFVKSASLIGHNNSQ 762
K+ L++ L +IF E V A+ E L V++ ++ G Q
Sbjct: 42 KMVYLLECL----QKTPPPVLIFAEKKADVDAI------HEYLLLKGVEAVAIHG-GKDQ 90
Query: 763 EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSR---- 818
E RT + I FR+G+ +LVAT VA +GLD VI +D+ + + Y+ R
Sbjct: 91 EERT----KAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVH-RIGRT 145
Query: 819 GRARKPG 825
G + G
Sbjct: 146 GCSGNTG 152
|
| >2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 8e-10
Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Query: 1843 GKKRKNGTQTFTRQTLNDIC-LRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTD 1901
G + + T+ N + L Y + E G +H KRF V V+ G
Sbjct: 2 GHHHHHHSHMLTKHGKNPVMELNEKRRGLKYELISETGGSHDKRFVMEVEVD----GQKF 57
Query: 1902 ECVGEPMPSVKKAKDSAAVLLLELLNK 1928
+ G + K AK AA+ LE L
Sbjct: 58 QGAG---SNKKVAKAYAALAALEKLFP 81
|
| >2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 5e-04
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 12/81 (14%)
Query: 1764 PMHPVRELQERCQQQAEGLEYKASRSGNLA-----TVEVYIDGVQVGVAQNPQKKMAQKL 1818
+PV EL E+ + GL+Y+ + +EV +DG Q KK+A+
Sbjct: 16 GKNPVMELNEKRR----GLKYELISETGGSHDKRFVMEVEVDG-QKFQGAGSNKKVAKAY 70
Query: 1819 AARNALAVLKEK--ETAEAKE 1837
AA AL L +A +
Sbjct: 71 AALAALEKLFPDTPLALDANK 91
|
| >1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 97 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 1e-09
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 1764 PMHPVRELQERCQQQAEGLEYK-ASRSGNLA----TVEVYIDGVQVGVAQNPQKKMAQKL 1818
P + +L + Q + YK S SG T +V ID + A+ K+ A+
Sbjct: 13 PGFYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNA 72
Query: 1819 AARNALAVLKEKETAEAKEKGDENG 1843
AA+ A+ +L + + G +G
Sbjct: 73 AAKLAVDILDNENKVDCHTSGPSSG 97
|
| >1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 97 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 1e-06
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 1858 LNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDS 1917
LN Y+ + GP H +RFT+ V ++ + E G S ++A+++
Sbjct: 20 LNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFP---EAKG---RSKQEARNA 72
Query: 1918 AAVLLLELLNK 1928
AA L +++L+
Sbjct: 73 AAKLAVDILDN 83
|
| >3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A Length = 73 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 1e-09
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 1861 ICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAV 1920
+ P P+Y V+EG P+H F V ++ + K A+ SAA
Sbjct: 12 YAQKYKLPTPVYEIVKEG-PSHKSLFQSTVILDGVRYN-----SLPGFFNRKAAEQSAAE 65
Query: 1921 LLLELLNK 1928
+ L L K
Sbjct: 66 VALRELAK 73
|
| >3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A Length = 73 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-05
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 1771 LQERCQQQAEGL-EYKASRSG----NLATVEVYIDGVQVGVAQN-PQKKMAQKLAARNAL 1824
LQE Q+ Y+ + G +L V +DGV+ +K A++ AA AL
Sbjct: 9 LQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVAL 68
Query: 1825 AVLKE 1829
L +
Sbjct: 69 RELAK 73
|
| >3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A Length = 76 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 2e-09
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 1858 LNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDS 1917
L + + N+ +PLY+C + +FT V + G + K A+ S
Sbjct: 10 LQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYT------GAATRTKKDAEIS 63
Query: 1918 AAVLLLELL 1926
A L +
Sbjct: 64 AGRTALLAI 72
|
| >3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A Length = 76 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-05
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Query: 1771 LQERCQQQAEGL-EYKASRSGNLA-----TVEVYIDGVQVGVAQNPQKKMAQKLAARNAL 1824
LQE Q+ + Y+ + L T V I G++ A KK A+ A R AL
Sbjct: 10 LQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTAL 69
Query: 1825 AVLKEK 1830
++
Sbjct: 70 LAIQSD 75
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 3e-09
Identities = 38/125 (30%), Positives = 54/125 (43%), Gaps = 16/125 (12%)
Query: 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEM 764
K L+ +L +D ++FVE A L + S+ G + SQ
Sbjct: 262 KRSFLLDLLNATG--KDSLTLVFVETKKGADSL----EDFLYHEGYACTSIHG-DRSQRD 314
Query: 765 RTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSR----GR 820
R +E + +FR G+ +LVAT+VA GLDI VI FDL + Y+ R GR
Sbjct: 315 R----EEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVH-RIGRTGR 369
Query: 821 ARKPG 825
G
Sbjct: 370 VGNLG 374
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 4e-09
Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 18/140 (12%)
Query: 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEM 764
K LI+IL + I+FVE A L + L F + S+ G + Q
Sbjct: 288 KRSKLIEIL----SEQADGTIVFVETKRGADFL---ASFLSEKEF-PTTSIHG-DRLQSQ 338
Query: 765 RTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSR----GR 820
R ++ + F++G + +L+ATSVA GLDI+ VI +D+ + Y+ R GR
Sbjct: 339 R----EQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVH-RIGRTGR 393
Query: 821 ARKPGSDYILMIERGNLSHA 840
G + + A
Sbjct: 394 VGNNGRATSFFDPEKDRAIA 413
|
| >2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 84 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 5e-09
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 8/71 (11%)
Query: 1858 LNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDS 1917
L++ ++ P+Y C R H FT+ V V T G S K AK
Sbjct: 14 LHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVG----DITCTGEG---TSKKLAKHR 65
Query: 1918 AAVLLLELLNK 1928
AA + +L
Sbjct: 66 AAEAAINILKA 76
|
| >2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 84 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-05
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 6/73 (8%)
Query: 1766 HPVRELQERCQQQAEGLEYK-ASRSG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAA 1820
P++ L E + Y+ T V + + + KK+A+ AA
Sbjct: 9 TPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDI-TCTGEGTSKKLAKHRAA 67
Query: 1821 RNALAVLKEKETA 1833
A+ +LK +
Sbjct: 68 EAAINILKANASG 80
|
| >3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens} Length = 90 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 5e-09
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 1858 LNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDS 1917
L + R P+Y ++ G AH FT+ V V + G PS K AK
Sbjct: 20 LQEYGTRIG-KTPVYDLLKAEGQAHQPNFTFRVTVG----DTSCTGQG---PSKKAAKHK 71
Query: 1918 AAVLLLELL 1926
AA + L+ L
Sbjct: 72 AAEVALKHL 80
|
| >3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens} Length = 90 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-05
Identities = 20/84 (23%), Positives = 26/84 (30%), Gaps = 6/84 (7%)
Query: 1756 PMVTPETLPMHPVRELQERCQQQAEGLEYK-ASRSG----NLATVEVYIDGVQVGVAQNP 1810
+ P+ LQE + + Y G T V + Q P
Sbjct: 5 SHMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGP 63
Query: 1811 QKKMAQKLAARNALAVLKEKETAE 1834
KK A+ AA AL LK E
Sbjct: 64 SKKAAKHKAAEVALKHLKGGSMLE 87
|
| >2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster} Length = 114 | Back alignment and structure |
|---|
Score = 54.2 bits (130), Expect = 1e-08
Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 8/99 (8%)
Query: 1832 TAEAKEKGDENGKKRKNGTQTFTRQTLNDIC-LRRNWPMPLYRCVREGGPAHAKRFTYAV 1890
++ +G +K + Q N + L +Y+ + GP HA FT +V
Sbjct: 11 SSGLVPRGSHMSDPKKKMCKERIPQPKNTVAMLNELRHGLIYKLESQTGPVHAPLFTISV 70
Query: 1891 RVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929
V+ G G S K A+ AA L ++
Sbjct: 71 EVD----GQKYLGQG---RSKKVARIEAAATALRSFIQF 102
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Length = 170 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 2e-08
Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 29/131 (22%)
Query: 705 KVQSLIKILLKYQHTEDFRAIIFV------ERVVAALVLPKVFAELPSLSFVKSASLIGH 758
K L+ +L + E R+I+FV + L + + L G
Sbjct: 17 KTALLVHLL---KQPEATRSIVFVRKRERVHELANWLREAGI----------NNCYLEG- 62
Query: 759 NNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSR 818
Q R E I + +GRV +LVAT VA G+DI + V FD+ ++ Y+ R
Sbjct: 63 EMVQGKRN----EAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLH-R 117
Query: 819 ----GRARKPG 825
RA + G
Sbjct: 118 IGRTARAGRKG 128
|
| >2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} Length = 103 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 2e-08
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 1858 LNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDS 1917
L + + P P+Y V+EG P+H F V ++ + K A+ S
Sbjct: 23 LQEYAQKYKLPTPVYEIVKEG-PSHKSLFQSTVILDGVRYN-----SLPGFFNRKAAEQS 76
Query: 1918 AAVLLLELLNK 1928
AA + L L K
Sbjct: 77 AAEVALRELAK 87
|
| >2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} Length = 103 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 2e-05
Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 8/82 (9%)
Query: 1770 ELQERCQQQAEGL-EYKASRSGN----LATVEVYIDGVQVGVA-QNPQKKMAQKLAARNA 1823
LQE Q+ Y+ + G L V +DGV+ +K A++ AA A
Sbjct: 22 RLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVA 81
Query: 1824 LAVLKEKETAE--AKEKGDENG 1843
L L + + E G
Sbjct: 82 LRELAKSSELSQCVSQPVHETG 103
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337 | Back alignment and structure |
|---|
Score = 56.7 bits (138), Expect = 3e-08
Identities = 32/152 (21%), Positives = 53/152 (34%), Gaps = 40/152 (26%)
Query: 701 KVTPKVQSLIKILLKYQHTEDFRAIIF------VERVVAALVLPKVFAELPSLSFVKSAS 754
V +S ++ L + +D I+F V ++V +A
Sbjct: 203 HVKDDWRSKVQAL---RENKDKGVIVFVRTRNRVAKLVRLF---------------DNAI 244
Query: 755 LIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAY 814
+ + Q +R I FR+G +L+ T VA GLDI VI FD + + Y
Sbjct: 245 ELRGDLPQSVRN----RNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTY 300
Query: 815 ---IQSRGRARKPGS---------DYILMIER 834
I GR + G +++
Sbjct: 301 IHRIGRTGRMGRKGEAITFILNEYWLEKEVKK 332
|
| >1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 98 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 5e-08
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
Query: 1766 HPVRELQERCQQQAEGL-EYKASRSGNLA---TVEVYIDGVQVGVAQNPQKKMAQKLAAR 1821
V L E Q+ + Y N + V IDGV G KK+A+ AAR
Sbjct: 17 SEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAAR 76
Query: 1822 NALAVLKEKETAEAKEKGDENG 1843
L +L + E G +G
Sbjct: 77 ATLEILIPDFVKQTSESGPSSG 98
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Length = 172 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 1e-07
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 12/117 (10%)
Query: 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEM 764
K + L +L + + +IFV+ V + L + L +F A I QE
Sbjct: 18 KNRKLFDLLDVLEFN---QVVIFVKSVQRCIALAQ---LLVEQNF--PAIAIHRGMPQEE 69
Query: 765 RTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRA 821
R + Q+ F+D + +LVAT++ G+DI + N+ +D+ + Y+ RA
Sbjct: 70 RLSRYQQ----FKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARA 122
|
| >2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A Length = 73 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 3e-07
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 1868 PMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLN 1927
P Y + + GP HA F +V VN G E G P+ KKAK AA L
Sbjct: 18 PGLQYMLLSQTGPVHAPLFVMSVEVN----GQVFEGSG---PTKKKAKLHAAEKALRSFV 70
Query: 1928 KW 1929
++
Sbjct: 71 QF 72
|
| >2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A Length = 73 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 4e-04
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 10/75 (13%)
Query: 1760 PETLPMHPVRELQERCQQQAEGLEYK-ASRSGN----LATVEVYIDGVQVGVAQNPQKKM 1814
LP + + +L E GL+Y S++G L + V ++G QV P KK
Sbjct: 2 GPVLPKNALMQLNEIKP----GLQYMLLSQTGPVHAPLFVMSVEVNG-QVFEGSGPTKKK 56
Query: 1815 AQKLAARNALAVLKE 1829
A+ AA AL +
Sbjct: 57 AKLHAAEKALRSFVQ 71
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Length = 165 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 6e-07
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 16/119 (13%)
Query: 705 KVQSLIKILLKYQHTEDFRAIIFV--ERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQ 762
K + L + T +A+IF R V L +L + F + S I + Q
Sbjct: 17 KYECLTDLYDSISVT---QAVIFCNTRRKVEELT-----TKLRNDKF--TVSAIYSDLPQ 66
Query: 763 EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRA 821
+ R M+E FR G +L++T + G+D++Q ++VI +DL YI GR
Sbjct: 67 QERDTIMKE----FRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRG 121
|
| >3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 6e-07
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 1872 YRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928
Y + E G +H KRF V V+ G + G + K AK AA+ LE L
Sbjct: 22 YELISETGGSHDKRFVMEVEVD----GQKFQGAG---SNKKVAKAYAALAALEKLFP 71
|
| >3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 7e-04
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 1765 MHPVRELQERCQQQAEGLEYKASRSGNLA-----TVEVYIDGVQVGVAQNPQKKMAQKLA 1819
+PV EL E+ + GL+Y+ + +EV +DG Q KK+A+ A
Sbjct: 7 KNPVMELNEKRR----GLKYELISETGGSHDKRFVMEVEVDG-QKFQGAGSNKKVAKAYA 61
Query: 1820 ARNALAVLK 1828
A AL L
Sbjct: 62 ALAALEKLF 70
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 7e-07
Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 32/146 (21%)
Query: 705 KVQSLIKILLKYQHTEDFRAIIFV--ERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQ 762
+ ++L ++L ++F ++F +R L + L + F K+ ++ G + SQ
Sbjct: 226 RFEALCRLL----KNKEFYGLVFCKTKRDTKELA-----SMLRDIGF-KAGAIHG-DLSQ 274
Query: 763 EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSR---- 818
R ++ I F+ ++ +L+AT V G+D+ N VI + L + +Y+ R
Sbjct: 275 SQR----EKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMH-RIGRT 329
Query: 819 GRARKPGS----------DYILMIER 834
GRA K G + IER
Sbjct: 330 GRAGKKGKAISIINRREYKKLRYIER 355
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 Length = 282 | Back alignment and structure |
|---|
Score = 51.6 bits (122), Expect = 9e-07
Identities = 42/255 (16%), Positives = 86/255 (33%), Gaps = 27/255 (10%)
Query: 221 PMRRREHYNGSSRKDVRDKDFRDREPRGYWERDRLGSNGMVFRLGSWEADHNRAGKEANG 280
P R +++G +R D+ P G + + + ++ + +
Sbjct: 40 PRFRYGNWDG----RIRLLDYNRLLPFGLVGQIKKFCDNFGYKAWIDPQINEKEELSRKD 95
Query: 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRS 340
++ + + + Q V E + I L T AG++LI LL R
Sbjct: 96 FDEWLSKLEIYSGNKRIEPHWYQKDA----VFEGLVNRRRILNLPTSAGRSLIQALLARY 151
Query: 341 ICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREF 400
+ + + + +VP L Q A+ ++G +++ +
Sbjct: 152 YLENYEGK-----ILIIVPTTALTTQMADDF-VDYRLFSHAMIKKIGGGASKDDKYKND- 204
Query: 401 DTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKR 460
V+V T Q ++ +++ DECH A K S ++S +
Sbjct: 205 --APVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATGKSISS-IISGLNNC------ 252
Query: 461 PSVFGMTASPVNLKG 475
FG++ S + K
Sbjct: 253 MFKFGLSGSLRDGKA 267
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 9e-07
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 12/117 (10%)
Query: 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEM 764
K + L +L + + +IFV+ V + L + L +F A I QE
Sbjct: 237 KNRKLFDLLDVLEFN---QVVIFVKSVQRCIALAQ---LLVEQNF--PAIAIHRGMPQEE 288
Query: 765 RTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRA 821
R + Q+ F+D + +LVAT++ G+DI + N+ +D+ + Y+ RA
Sbjct: 289 RLSRYQQ----FKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARA 341
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 1e-06
Identities = 35/119 (29%), Positives = 49/119 (41%), Gaps = 16/119 (13%)
Query: 705 KVQSLIKILLKYQHTEDFRAIIFV--ERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQ 762
K+ L + K Q +AIIF V L ++ L + S Q
Sbjct: 245 KLHCLNTLFSKLQIN---QAIIFCNSTNRVELLA-----KKITDLGY--SCYYSHARMKQ 294
Query: 763 EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRA 821
+ R E FR G+V LV + + G+DI+ NVVI FD KT Y+ GR+
Sbjct: 295 QERNKVFHE----FRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRS 349
|
| >2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B Length = 71 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-06
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 1872 YRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELL 1926
Y + E G +HAK F +V V+ G E G + K AK AA L +
Sbjct: 19 YDFLSESGESHAKSFVMSVVVD----GQFFEGSG---RNKKLAKARAAQSALATV 66
|
| >2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B Length = 71 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 2e-05
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 10/71 (14%)
Query: 1764 PMHPVRELQERCQQQAEGLEYKASRSGNLA-----TVEVYIDGVQVGVAQNPQKKMAQKL 1818
+PV L E GL+Y + + V +DG Q KK+A+
Sbjct: 3 GKNPVMILNELRP----GLKYDFLSESGESHAKSFVMSVVVDG-QFFEGSGRNKKLAKAR 57
Query: 1819 AARNALAVLKE 1829
AA++ALA +
Sbjct: 58 AAQSALATVFN 68
|
| >2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens} Length = 85 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-06
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 1864 RRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLL 1923
+ +PLY+ ++ GP+HA+ +T AV G G PS+++A+ AA+ L
Sbjct: 18 GKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIG---CGKG---PSIQQAEMGAAMDAL 71
Query: 1924 ELLNKW 1929
E N
Sbjct: 72 EKYNFP 77
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 2e-06
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 761 SQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGR 820
Q+ R + +FR G +L++T V GLD+ Q +++I +DL YI GR
Sbjct: 311 PQKERE----SIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGR 366
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 2e-06
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 761 SQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGR 820
Q+ R + +FR G +L++T + G+D++Q ++VI +DL YI GR
Sbjct: 294 PQQERD----TIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGR 349
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 3e-06
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 761 SQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGR 820
Q+ R + +FR G +L+ T + G+D++Q ++VI +DL YI GR
Sbjct: 315 DQKERD----VIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGR 370
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Length = 212 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 5e-06
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 761 SQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSR-- 818
SQ R + FR G V +LVAT VA GLDI Q ++V+ + L AY R
Sbjct: 66 SQGERE----RVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQH-RSG 120
Query: 819 --GRARKPG 825
GRA + G
Sbjct: 121 RTGRAGRGG 129
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 7e-06
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 16/105 (15%)
Query: 705 KVQSLIKILLKYQHTEDFRAIIFVE--RVVAALVLPKVFAELPSLSFVKSASLIGHNNSQ 762
K Q+L I Y +AIIF + R L E+ SL+ +
Sbjct: 21 KYQALCNI---YGSITIGQAIIFCQTRRNAKWLT-----VEMIQDGH--QVSLLSGELTV 70
Query: 763 EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDL 807
E R +Q FRDG+ +L+ T+V G+D++Q +V+ FDL
Sbjct: 71 EQRASIIQR----FRDGKEKVLITTNVCARGIDVKQVTIVVNFDL 111
|
| >1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A Length = 99 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 8e-06
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 1771 LQERCQQQAEGLEYKASRSGNLA----TVEVYIDGVQ-VGVAQNPQKKMAQKLAARNALA 1825
L C ++ Y+ GN EV ++G G+ + KK AQ AAR+ +
Sbjct: 12 LYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVN 71
Query: 1826 VLKEKETAEAKE 1837
L +++E
Sbjct: 72 YLVRINEVKSEE 83
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Length = 300 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 9e-06
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 761 SQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSR-- 818
SQ R + FR G V +LVAT VA GLDI Q ++V+ + + AY R
Sbjct: 63 SQGERE----RVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQH-RSG 117
Query: 819 --GRARKPG 825
GRA + G
Sbjct: 118 RTGRAGRGG 126
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Length = 163 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 1e-05
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 761 SQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDL 807
QE R + + +F+ G LVAT VA G+DI ++VI +DL
Sbjct: 70 IQEDRF----DVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDL 112
|
| >4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 1e-05
Identities = 20/142 (14%), Positives = 48/142 (33%), Gaps = 31/142 (21%)
Query: 1209 EAMQIHNADMPTGKLMMADSCANAGDLEGRIVTAAHSG---KRFYVESIRYEMTAESSFP 1265
E + + + L + +++G V H G +++ V ++ + +FP
Sbjct: 238 EVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFP 297
Query: 1266 RKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYCKNLLSPRFEHSEEQEGEG 1325
++ G + A Y+K ++ + L + P ++
Sbjct: 298 LQQES-GQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQ---------------------- 334
Query: 1326 EEILDKTYYVFLPPELCFIHPL 1347
+ + +LP E+C I
Sbjct: 335 -----EQKHTYLPLEVCNIVAG 351
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 2e-05
Identities = 39/187 (20%), Positives = 75/187 (40%), Gaps = 38/187 (20%)
Query: 305 RPYQLDVLEQAKKKNTIAFL---ETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKV 361
P+QL++ +++ L E G GKT+ A +++ L +++L + VP+
Sbjct: 155 IPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILH--QQLLSGAAERVLII--VPE- 209
Query: 362 PLVYQ-QAEVIR---EQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMT-AQILLNI 416
L +Q E++R + E D ++ FDT+Q+++ + +
Sbjct: 210 TLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNP------FDTEQLVICSLDFARRSK 263
Query: 417 LRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKR---------PSVFGMT 467
R + +LL++DE HH + S+E + P V +T
Sbjct: 264 QRLEHLCEAEWDLLVVDEAHH----------LVWSEDAPSREYQAIEQLAEHVPGVLLLT 313
Query: 468 ASPVNLK 474
A+P L
Sbjct: 314 ATPEQLG 320
|
| >1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 128 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 2e-05
Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 8/71 (11%)
Query: 1858 LNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDS 1917
L + C R P P+Y V+ + F V V S K A+ +
Sbjct: 32 LLEWCRREKLPQPVYETVQRT---IDRMFCSVVTVAE-----QKYQSTLWDKSKKLAEQT 83
Query: 1918 AAVLLLELLNK 1928
AA++ L
Sbjct: 84 AAIVCLRSQGL 94
|
| >1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 128 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 6e-05
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 4/91 (4%)
Query: 1766 HPVRELQERCQQQAEGL-EYKASRSGN--LATVEVYIDGVQVGVAQ-NPQKKMAQKLAAR 1821
P L E C+++ Y+ + + V + + + KK+A++ AA
Sbjct: 27 TPKMCLLEWCRREKLPQPVYETVQRTIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAI 86
Query: 1822 NALAVLKEKETAEAKEKGDENGKKRKNGTQT 1852
L E +E N +KR+ Q
Sbjct: 87 VCLRSQGLPEGRLGEESPSLNKRKREAPDQD 117
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 3e-05
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 761 SQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDL 807
+ R I FR+GR +L+ T+V G+DI ++V+ +DL
Sbjct: 278 QTQERD----RLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDL 320
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 3e-05
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 761 SQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDL 807
E R I +FR+G+ +LV T+V G+D+ Q +VVI FDL
Sbjct: 368 MVEQR----AAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDL 410
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 4e-05
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 761 SQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDL 807
E R I +FR+G+ +LV T+V G+D+ Q +VVI FDL
Sbjct: 301 MVEQR----AAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDL 343
|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 7e-05
Identities = 30/147 (20%), Positives = 46/147 (31%), Gaps = 1/147 (0%)
Query: 108 NGSDKDGVDRKRKLENCENVNGYLVNGKAGGRLSDHFTKENGVHRDNGNNDHEASRIRDF 167
+G DG +E V G+ GG + R +G +D R
Sbjct: 165 DGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPG 224
Query: 168 DSEDRFSKRARVSVCKNESQYSSRGQYCSSDKDRVFGRKRLRDLDDIGRRDRDPMRRREH 227
S R R + + R + + R R+R D R R R ++
Sbjct: 225 PSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDK 284
Query: 228 YNGSSRKDVRDKDFRDREPRGYWERDR 254
R+ R ++ R R R E R
Sbjct: 285 DRDRKRRSSRSRE-RARRERERKEELR 310
|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 5e-04
Identities = 23/104 (22%), Positives = 35/104 (33%)
Query: 151 HRDNGNNDHEASRIRDFDSEDRFSKRARVSVCKNESQYSSRGQYCSSDKDRVFGRKRLRD 210
+ + +SR R+ +R K + ++ S G D D
Sbjct: 282 KDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPD 341
Query: 211 LDDIGRRDRDPMRRREHYNGSSRKDVRDKDFRDREPRGYWERDR 254
+ RDRD RRR H + R+ RD+D ER
Sbjct: 342 GPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGS 385
|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 6e-04
Identities = 19/104 (18%), Positives = 27/104 (25%)
Query: 151 HRDNGNNDHEASRIRDFDSEDRFSKRARVSVCKNESQYSSRGQYCSSDKDRVFGRKRLRD 210
E R D + + G +K R R+R R
Sbjct: 298 RARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRS 357
Query: 211 LDDIGRRDRDPMRRREHYNGSSRKDVRDKDFRDREPRGYWERDR 254
R RD R R+ R + + RD G +D
Sbjct: 358 HRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDN 401
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Length = 590 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 9e-05
Identities = 41/252 (16%), Positives = 80/252 (31%), Gaps = 49/252 (19%)
Query: 247 RGYWERDRLGSNGMVFRLGSW---EADHNRAGKEANGINQECNGKVGKKSEAKEKMPEEQ 303
E D G L + + R + +++ + + P
Sbjct: 125 HEILEFDYT--TGEEQLLSRFPTPDELFKRLCGDEGIKDEDLDTLLSPYHHVSGYSP--- 179
Query: 304 ARPYQLDVLEQA-------KKKNTIAFLETGAGKTLIAVLLIR-----SICNDLQRQNKK 351
R YQ + +A KK++ I + TG GKT++A + + +
Sbjct: 180 -RYYQQIAINRAVQSVLQGKKRSLIT-MATGTGKTVVAFQISWKLWSARWNRTGDYRKPR 237
Query: 352 MLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQ 411
+L FL + LV + G G + ++++ Q
Sbjct: 238 IL--FLADRNVLVDDPKDKTFTPFGDARHKIEGG------------KVVKSREIYFAIYQ 283
Query: 412 ILLNILRHSIIKM----EAINLLILDECHH--AVKKHPYSLVMSEFYHTTSKEKRPSVFG 465
+ + R + + +L+I+DECH A + ++ F + G
Sbjct: 284 SIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREILEYF-------EPAFQIG 336
Query: 466 MTASPVNLKGVS 477
MTA+P+
Sbjct: 337 MTATPLREDNRD 348
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 9e-05
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 761 SQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGR 820
+Q RT + +F+ +LV T V G+D + V++ + + YI GR
Sbjct: 377 TQNKRT----SLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGR 432
Query: 821 -AR 822
AR
Sbjct: 433 TAR 435
|
| >2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} Length = 236 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 1e-04
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 1868 PMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELL 1926
P Y + E G +HAK F +V V+ + + + K AK AA L +
Sbjct: 172 PGLKYDFLSESGESHAKSFVMSVVVD--GQFFEGSG-----RNKKLAKARAAQSALATV 223
|
| >2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} Length = 236 | Back alignment and structure |
|---|
Score = 42.6 bits (99), Expect = 6e-04
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 1868 PMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLE 1924
P Y + + GP HA F +V VN G E G P+ KKAK AA L
Sbjct: 18 PGLQYMLLSQTGPVHAPLFVMSVEVN----GQVFEGSG---PTKKKAKLHAAEKALR 67
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 2e-04
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 761 SQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSR-- 818
+Q RT + +F+ +LV T V G+D + V++ + + YI R
Sbjct: 326 TQNKRT----SLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIH-RIG 380
Query: 819 --GRARKPGSDYILMIER 834
R+ K GS + + +
Sbjct: 381 RTARSGKEGSSVLFICKD 398
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 2e-04
Identities = 21/133 (15%), Positives = 45/133 (33%), Gaps = 28/133 (21%)
Query: 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEM 764
K+ L++I +IF + L + L F
Sbjct: 243 KLVELLEIFRD-------GILIFAQTEEEGKEL---YEYLKRFKF-NVGETWS------- 284
Query: 765 RTFQMQETIAKFRDGRVTLLVATSVAEE----GLDIRQC-NVVIRFDL--AKTVLAYIQS 817
+ ++ F+ G++ +L+ G+D+ + VI + V YIQ+
Sbjct: 285 ---EFEKNFEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQA 341
Query: 818 RGRARKPGSDYIL 830
GR+ + + ++
Sbjct: 342 SGRSSRILNGVLV 354
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 4e-04
Identities = 24/159 (15%), Positives = 48/159 (30%), Gaps = 27/159 (16%)
Query: 315 AKKKNTIAFLETGAGKT--LIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR 372
K T+ GAGKT + +L + + L L P ++ + E
Sbjct: 6 KKGMTTVLDFHPGAGKTRRFLPQILAECAR-----RRLRTL--VLAPTRVVLSEMKEAFH 58
Query: 373 EQT-GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLI 431
+ + + + M L + ++ ++I
Sbjct: 59 GLDVKFHTQAFSAHGSG-------------REVIDAMCHATLTYRM-LEPTRVVNWEVII 104
Query: 432 LDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASP 470
+DE H P S+ + ++ + MTA+P
Sbjct: 105 MDEAHFL---DPASIAARGWAAHRARANESATILMTATP 140
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1931 | |||
| 2qvw_A | 756 | GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral | 100.0 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 100.0 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 100.0 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 100.0 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 100.0 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 100.0 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 100.0 | |
| 3c4b_A | 265 | Endoribonuclease dicer; RNAse, dsRNA binding prote | 100.0 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 100.0 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 100.0 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 100.0 | |
| 3n3w_A | 248 | Ribonuclease III; nuclease domain, ribonuclase III | 100.0 | |
| 2nug_A | 221 | Ribonuclease III, RNAse III; dsRNA, RNA interferen | 100.0 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 100.0 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 100.0 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 100.0 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 100.0 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 100.0 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 100.0 | |
| 1o0w_A | 252 | Ribonuclease III, RNAse III; TM1102, structural ge | 100.0 | |
| 2a11_A | 242 | Ribonuclease III, RNAse III; nuclease domain, stru | 100.0 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 100.0 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 100.0 | |
| 3rv0_A | 341 | K. polysporus DCR1; RNAse III enzyme, RNA binding | 100.0 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 100.0 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 100.0 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 100.0 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 100.0 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 100.0 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 100.0 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 100.0 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 100.0 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 100.0 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 100.0 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 100.0 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 100.0 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 100.0 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 100.0 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 99.98 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 99.98 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 99.97 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.97 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.97 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 99.97 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 99.97 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.97 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 99.97 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 99.96 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.96 | |
| 3o2r_A | 170 | Ribonuclease III; structural genomics, center for | 99.96 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 99.96 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.96 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.95 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.95 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.95 | |
| 3rv1_A | 246 | K. polysporus DCR1; RNAse III enzyme, RNA binding | 99.95 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.95 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.95 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.95 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.95 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 99.94 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.94 | |
| 2kou_A | 102 | Dicer-like protein 4; ATP-binding, endonuclease, h | 99.92 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.91 | |
| 3o2r_A | 170 | Ribonuclease III; structural genomics, center for | 99.9 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 99.89 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 99.88 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 99.88 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 99.88 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 99.88 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.88 | |
| 1qu6_A | 179 | Protein kinase PKR; dsRNA-binding domain, solution | 99.88 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 99.88 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 99.87 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 99.87 | |
| 3n3w_A | 248 | Ribonuclease III; nuclease domain, ribonuclase III | 99.87 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.87 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 99.87 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 99.87 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 99.86 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.86 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 99.86 | |
| 3rv1_A | 246 | K. polysporus DCR1; RNAse III enzyme, RNA binding | 99.86 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.86 | |
| 2qvw_A | 756 | GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral | 99.86 | |
| 3c4b_A | 265 | Endoribonuclease dicer; RNAse, dsRNA binding prote | 99.85 | |
| 2nug_A | 221 | Ribonuclease III, RNAse III; dsRNA, RNA interferen | 99.85 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.84 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 99.84 | |
| 2yt4_A | 232 | Protein DGCR8; DSRBD, RNA binding domain, RNA bind | 99.84 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.83 | |
| 2a11_A | 242 | Ribonuclease III, RNAse III; nuclease domain, stru | 99.83 | |
| 1o0w_A | 252 | Ribonuclease III, RNAse III; TM1102, structural ge | 99.82 | |
| 3rv0_A | 341 | K. polysporus DCR1; RNAse III enzyme, RNA binding | 99.82 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.8 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.8 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.79 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.79 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.78 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.78 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.78 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.76 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.74 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.74 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 99.72 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.56 | |
| 2l3j_A | 236 | Double-stranded RNA-specific editase 1; editing, d | 99.7 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 99.67 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 99.66 | |
| 1u61_A | 138 | Hypothetical protein; structural genomics, PSI, pr | 99.62 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 99.59 | |
| 1u61_A | 138 | Hypothetical protein; structural genomics, PSI, pr | 99.55 | |
| 3adl_A | 88 | RISC-loading complex subunit tarbp2; TRBP2, miRNA | 99.54 | |
| 3adj_A | 76 | F21M12.9 protein; HYL1, miRNA processing, RNA bind | 99.54 | |
| 1di2_A | 69 | XLRBPA, double stranded RNA binding protein A; pro | 99.53 | |
| 2cpn_A | 89 | TAR RNA-binding protein 2; double-stranded RNA bin | 99.53 | |
| 1ekz_A | 76 | DSRBDIII, maternal effect protein (staufen); struc | 99.49 | |
| 1uhz_A | 89 | Staufen (RNA binding protein) homolog 2; DSRM, sta | 99.47 | |
| 2gsl_A | 137 | Hypothetical protein; alpha-helical protein, struc | 99.47 | |
| 3adg_A | 73 | F21M12.9 protein; HYL1, miRNA processing mechanism | 99.47 | |
| 2khx_A | 85 | Ribonuclease 3; drosha, RNA binding domain, hydrol | 99.46 | |
| 1x49_A | 97 | Interferon-induced, double-stranded RNA- activated | 99.45 | |
| 2dix_A | 84 | Interferon-inducible double stranded RNA- dependen | 99.43 | |
| 2b7t_A | 73 | Double-stranded RNA-specific editase 1; RNA editin | 99.42 | |
| 3llh_A | 90 | RISC-loading complex subunit tarbp2; DSRBD, DSRM, | 99.41 | |
| 2gsl_A | 137 | Hypothetical protein; alpha-helical protein, struc | 99.4 | |
| 1whq_A | 99 | RNA helicase A; double-stranded RNA binding domain | 99.37 | |
| 2l33_A | 91 | Interleukin enhancer-binding factor 3; structural | 99.35 | |
| 1x48_A | 88 | Interferon-induced, double-stranded RNA- activated | 99.34 | |
| 2l2n_A | 103 | Hyponastic leave 1; DSRBD, miRNA, RNA binding prot | 99.34 | |
| 1uil_A | 113 | Double-stranded RNA-binding motif; structural geno | 99.33 | |
| 1x47_A | 98 | DGCR8 protein; structural genomics, DSRM domain, N | 99.32 | |
| 2dmy_A | 97 | Spermatid perinuclear RNA-binding protein; DSRM do | 99.31 | |
| 3o7v_X | 124 | PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, | 99.31 | |
| 2b7v_A | 71 | Double-stranded RNA-specific editase 1; RNA editin | 99.27 | |
| 1t4n_A | 94 | Ribonuclease III; DSRBD, RNA-binding, hydrolase; N | 99.27 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 99.22 | |
| 3p1x_A | 75 | Interleukin enhancer-binding factor 3; structural | 99.22 | |
| 3qir_A | 148 | PIWI-like protein 2; structural genomics consortiu | 99.21 | |
| 1t4o_A | 117 | Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydro | 99.2 | |
| 2ljh_A | 114 | Double-stranded RNA-specific editase ADAR; DSRBD, | 99.17 | |
| 1qu6_A | 179 | Protein kinase PKR; dsRNA-binding domain, solution | 99.16 | |
| 2xfm_A | 150 | MIWI, PIWI-like protein 1; RNA-protein complex, di | 99.15 | |
| 1whn_A | 128 | Hypothetical protein riken cDNA 2310016K04; double | 99.09 | |
| 3adg_A | 73 | F21M12.9 protein; HYL1, miRNA processing mechanism | 99.0 | |
| 1t4n_A | 94 | Ribonuclease III; DSRBD, RNA-binding, hydrolase; N | 98.98 | |
| 3llh_A | 90 | RISC-loading complex subunit tarbp2; DSRBD, DSRM, | 98.98 | |
| 3adl_A | 88 | RISC-loading complex subunit tarbp2; TRBP2, miRNA | 98.96 | |
| 1di2_A | 69 | XLRBPA, double stranded RNA binding protein A; pro | 98.96 | |
| 1x48_A | 88 | Interferon-induced, double-stranded RNA- activated | 98.95 | |
| 1t4o_A | 117 | Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydro | 98.94 | |
| 2yt4_A | 232 | Protein DGCR8; DSRBD, RNA binding domain, RNA bind | 98.92 | |
| 2dix_A | 84 | Interferon-inducible double stranded RNA- dependen | 98.92 | |
| 3adj_A | 76 | F21M12.9 protein; HYL1, miRNA processing, RNA bind | 98.91 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 98.91 | |
| 1whq_A | 99 | RNA helicase A; double-stranded RNA binding domain | 98.91 | |
| 1x47_A | 98 | DGCR8 protein; structural genomics, DSRM domain, N | 98.91 | |
| 2cpn_A | 89 | TAR RNA-binding protein 2; double-stranded RNA bin | 98.91 | |
| 1x49_A | 97 | Interferon-induced, double-stranded RNA- activated | 98.91 | |
| 1uhz_A | 89 | Staufen (RNA binding protein) homolog 2; DSRM, sta | 98.89 | |
| 2l2n_A | 103 | Hyponastic leave 1; DSRBD, miRNA, RNA binding prot | 98.89 | |
| 1ekz_A | 76 | DSRBDIII, maternal effect protein (staufen); struc | 98.89 | |
| 2khx_A | 85 | Ribonuclease 3; drosha, RNA binding domain, hydrol | 98.84 | |
| 1whn_A | 128 | Hypothetical protein riken cDNA 2310016K04; double | 98.83 | |
| 1uil_A | 113 | Double-stranded RNA-binding motif; structural geno | 98.77 | |
| 2b7t_A | 73 | Double-stranded RNA-specific editase 1; RNA editin | 98.75 | |
| 2dmy_A | 97 | Spermatid perinuclear RNA-binding protein; DSRM do | 98.74 | |
| 2l33_A | 91 | Interleukin enhancer-binding factor 3; structural | 98.69 | |
| 2ljh_A | 114 | Double-stranded RNA-specific editase ADAR; DSRBD, | 98.62 | |
| 2l3j_A | 236 | Double-stranded RNA-specific editase 1; editing, d | 98.56 | |
| 2b7v_A | 71 | Double-stranded RNA-specific editase 1; RNA editin | 98.49 | |
| 3p1x_A | 75 | Interleukin enhancer-binding factor 3; structural | 98.41 | |
| 3hgt_A | 328 | HDA1 complex subunit 3; RECA-like domain, SWI2/SNF | 98.27 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 97.53 | |
| 1vyn_A | 143 | Argonaute2; nucleic acid binding, RNA interference | 97.42 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 97.33 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 97.33 | |
| 3mj0_A | 124 | Protein argonaute-2; argonaut, PAZ domain, 3'-END | 97.18 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 97.18 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 97.11 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 96.71 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 96.6 | |
| 4f3t_A | 861 | Protein argonaute-2; hydrolase/gene regulation, RN | 95.86 | |
| 2o0j_A | 385 | Terminase, DNA packaging protein GP17; nucleotide- | 95.84 | |
| 2kou_A | 102 | Dicer-like protein 4; ATP-binding, endonuclease, h | 95.64 | |
| 3cpe_A | 592 | Terminase, DNA packaging protein GP17; large termi | 94.53 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 94.44 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 93.54 | |
| 3lfu_A | 647 | DNA helicase II; SF1 helicase, ATP-binding, DNA da | 93.53 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 93.38 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 92.78 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 92.76 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 92.39 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 91.99 | |
| 1uaa_A | 673 | REP helicase, protein (ATP-dependent DNA helicase | 91.75 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 91.64 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 91.22 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 90.65 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 89.83 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 89.56 | |
| 1pjr_A | 724 | PCRA; DNA repair, DNA replication, SOS response, h | 89.08 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 88.73 | |
| 1u04_A | 771 | Argonaute, hypothetical protein PF0537; RNAI, sile | 88.18 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 87.66 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 87.37 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 86.51 | |
| 3u4q_A | 1232 | ATP-dependent helicase/nuclease subunit A; helicas | 86.28 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 86.09 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 86.05 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 85.96 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 85.84 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 85.37 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 84.77 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 84.52 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 84.35 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 84.32 | |
| 1w4r_A | 195 | Thymidine kinase; type II, human, cytosolic, phosp | 83.91 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 83.71 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 83.65 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 83.61 | |
| 3e2i_A | 219 | Thymidine kinase; Zn-binding, ATP-binding, DNA syn | 83.19 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 82.91 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 82.65 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 82.15 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 82.08 | |
| 2db2_A | 119 | KIAA0890 protein; DSRM domain, structural genomics | 82.02 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 81.28 | |
| 2zpa_A | 671 | Uncharacterized protein YPFI; RNA modification enz | 80.88 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 80.11 |
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-71 Score=722.80 Aligned_cols=415 Identities=25% Similarity=0.354 Sum_probs=336.3
Q ss_pred CccccCCcEEEcccCC-CeEEEEeeccCCCCCCCCCCCCCCCCCCccccHHHHHHhhcCccccCCCCceEEeeccccccc
Q 000174 1231 NAGDLEGRIVTAAHSG-KRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYCKN 1309 (1931)
Q Consensus 1231 ~~~~l~~~vv~~~~~~-~~y~v~~v~~dltp~s~fp~~~g~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL~~~~~~~~~n 1309 (1931)
+.++|.|+||+|+||+ +.|+|.+|++|+||.|+||... .+.||.+||+++|++++.+.+||||.++++.+.
T Consensus 152 ~~~~l~g~vV~t~ynn~r~Y~i~~id~d~~P~S~F~~~~------~~~Ty~dYYk~ky~i~I~d~~QPLL~~~~~~~~-- 223 (756)
T 2qvw_A 152 LSASLHGRMVATPEISWSLYVVLGIDSTQTSLSYFTRAN------ESITYMRYYATAHNIHLRAADLPLVAAVRLDDL-- 223 (756)
T ss_dssp CTTTSTTCEEEETTTTTEEEEEEEEEEEEETTSEEEETT------EEEEHHHHHHHTTCCCCSCTTSEEEEEEETTTT--
T ss_pred hHHHhCCCEEecCCCCceEEEEEEecCCCCCCCcCCCCC------CCCCHHHHHHHHcCcccccCCCCeEEEEecccc--
Confidence 4567899999999999 7888999999999999999653 589999999999999999999999999988644
Q ss_pred cCCCccccccccccccccccccceEEEcCCcccccccCChHHHH--HhhchhhHHHHHHHHHHHHH-HhhhcCCCC-Chh
Q 000174 1310 LLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHPLPGSLVR--GAQRLPSIMRRVESMLLAIQ-LKDKINYPV-PAS 1385 (1931)
Q Consensus 1310 ~l~~~~~~~~~~~~~~~~~~~k~~~~~L~Pelc~v~~lp~~~~~--~~~~lPsi~~rl~~~l~a~~-l~~~l~~~~-~~~ 1385 (1931)
++++...+. ..+...++ .++||||+|.++++|+++|+ .+++|||||||||++++|.+ ++..+.... -+.
T Consensus 224 -~~~r~~~~~----~~~~~~~~--~v~L~PELC~vt~Lp~sl~~~~~~~~lPsil~rie~ll~a~~al~~~~p~~~~i~~ 296 (756)
T 2qvw_A 224 -KDHQIPAPG----SWDDLAPK--LRFLPPELCLLLPDEFDLIRVQALQFLPEIAKHICDIQNTICALDKSFPDCGRIGG 296 (756)
T ss_dssp -TTCCCCSTT----C-CCSCSS--CEEECTTTCEECCTTSCTTHHHHHTTHHHHHHHHHHHHHHHHHHGGGSCCCSCCHH
T ss_pred -ccccccccc----ccccCCcc--ceeeCHHHheeecCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCcccccCH
Confidence 443322111 11111222 47899999999999999999 99999999999999999976 765332221 134
Q ss_pred HHHHHhccccCCCC---------------------CCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccH
Q 000174 1386 KILEALTAASCQET---------------------FCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNL 1444 (1931)
Q Consensus 1386 ~ll~AlT~~s~~~~---------------------~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~ 1444 (1931)
.+|+|||+++|.+. .|||||||||||||++++|.|||.+||+.+||+||.+|+.+|||.
T Consensus 297 ~~leAlT~~~~~~~g~~~~~~~~~~AlTh~s~~~~~nnERLEfLGDavL~~~vs~~L~~~~P~~~eG~Ls~lRs~lVsn~ 376 (756)
T 2qvw_A 297 ERYFAITAGLRLDQGRGRGLAGWRTPFGPFGVSHTDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNE 376 (756)
T ss_dssp HHHHHHHHHHBCSCCBTTBSBTTEEECBGGGBCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHSHH
T ss_pred HHHHHHhhhhhhhhccccchhhhhhhcccccccCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCch
Confidence 67899988877654 489999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCccceeccccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCC
Q 000174 1445 VLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDS 1524 (1931)
Q Consensus 1445 ~L~~~a~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1524 (1931)
+|+++|+++||++||+..++..
T Consensus 377 ~La~~A~~lgL~~~l~~~~~e~---------------------------------------------------------- 398 (756)
T 2qvw_A 377 ALNYLVQTLGLPQLAEFSNNLV---------------------------------------------------------- 398 (756)
T ss_dssp HHHHHHHHTTCTTTCBCCSCC-----------------------------------------------------------
T ss_pred HHHHHHHHcChHHHhccCCCCC----------------------------------------------------------
Confidence 9999999999999998754210
Q ss_pred CCccccccchhhhHHHHHhhheeec-cCHHHHHHHHh-------------------------------------------
Q 000174 1525 SSYRVLSSKTLADVVEALIGVYYVE-GGKDAANHLMK------------------------------------------- 1560 (1931)
Q Consensus 1525 ~~~~~~~~K~lADvvEALiGA~~l~-~G~~~a~~~~~------------------------------------------- 1560 (1931)
..+|.+||+|||+|||+|+| +|.+.|..|+.
T Consensus 399 -----~~~~ilaD~~EAliGAiylD~~G~~~a~~~v~~~~~~~~~~~~~~~~~~Dp~Kt~LqE~~q~~~ia~~v~~~~~~ 473 (756)
T 2qvw_A 399 -----AKSKTWADMYEEIVGSIFTGPNGIYGCEEFLAKTLMSPEHSKTVGSACPDAVTKASKRVCMGEAGAHEFRSLVDY 473 (756)
T ss_dssp ------CCCCHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHBCGGGSCC---CCCHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred -----CcccHHHhHHHHHhCcccccccChHHHHHHHHHHHHhhhhcccccccccCchHHHHHHHHhccchhhhhhhhhhH
Confidence 13689999999999999999 99988876652
Q ss_pred --------------------------------HhhccccCC-------CC-----------c-------------CCC--
Q 000174 1561 --------------------------------WIGIQVESD-------PE-----------E-------------VGC-- 1575 (1931)
Q Consensus 1561 --------------------------------~l~i~~~~~-------~~-----------~-------------~~~-- 1575 (1931)
|+|+.+.+. +. + .++
T Consensus 474 ak~~~~~~~~~~~aa~~aL~~l~~~~~~~f~~w~g~~~~~~~~~~~~~~~~~ks~~d~~~al~~g~~l~~~g~~~~~~~~ 553 (756)
T 2qvw_A 474 ACEQGISVFCSSRVSTMFLERLRDIPAEDMLDWYRLGIQFSHRSGLSGPGGVVSVIDIMTHLARGLWLGSPGFYVEQQTD 553 (756)
T ss_dssp TTTTTCCCBSSSHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTSSCSSCCSCHHHHHHHHHHHHHHHCCEEECCC---
T ss_pred HhhhccccchhhHHHHHHHHhhcccchHhHHhhcCCccccccccccccccccchhhhHHHHhhcCceecccccccccccc
Confidence 332221100 00 0 000
Q ss_pred ------CC---------CCCCC----------CccccchhhHHHHHHHcCCCcCC-------------------------
Q 000174 1576 ------PS---------RPACV----------PESVLRSVDFHALEDALKIKFKD------------------------- 1605 (1931)
Q Consensus 1576 ------~~---------~~~~~----------p~~~~~~~~~~~le~~lgy~F~~------------------------- 1605 (1931)
.. ..... |........+..+|++|||+|+|
T Consensus 554 ~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~lE~~lgY~F~~~~~~~~~~~L~~~~l~~i~~~~~~~ 633 (756)
T 2qvw_A 554 KNESACPPTIPVLYIYHRSVQCPVLYGSLTETPTGPVASKVLALYEKILAYESSGGSKHIAAQTVSRSLAVPIPSGTIPF 633 (756)
T ss_dssp ------CCEEECCTTTTSSSCCTTTTCCCC---CTTTHHHHHHHHHHHHSSCCCCSSHHHHHHHHHHTTCSCCCSSCHHH
T ss_pred ccccccccCCchhhhhcccccCccccccccccccchhhhhHHHHHHHHhCCCccCcchhhhHhhhhhhhccccccccccc
Confidence 00 00000 11112334588999999999999
Q ss_pred -HHHHHHHhcCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHHHHHHHHHcC--chhh
Q 000174 1606 -RGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHK--LHVH 1682 (1931)
Q Consensus 1606 -~~LL~~AlTH~S~~~~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~La~~a~~~g--l~~~ 1682 (1931)
+.||.+||||+| ||||||||||||+++|++|||.+||++++|.||.+|+++|||++||.+|+++| |++|
T Consensus 634 ~~~LL~~AlTH~S--------neRLEfLGDaVL~l~vs~~L~~~~p~~~eG~Lt~lrs~lV~~~~La~~a~~lg~~L~~~ 705 (756)
T 2qvw_A 634 LIRLLQIALTPHV--------YQKLELLGDAFLKCSLALHLHALHPTLTEGALTRMRQSAETNSVLGRLTKRFPSVVSEV 705 (756)
T ss_dssp HHHHHHHHHSTGG--------GHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSHHHHHHHHHTSCTHHHHH
T ss_pred cHHHHHHHhcCcc--------chHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHhCChHHHHHHHHhcccHHHH
Confidence 899999999998 89999999999999999999999999999999999999999999999999999 9999
Q ss_pred hccCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCceeEEeeeccCCCCCCCC
Q 000174 1683 LRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMVTP 1760 (1931)
Q Consensus 1683 l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~~~v~~~~~~~l~~~i~~ 1760 (1931)
|+.+.++. ...+|++||+|||+|||||+|+|++ .+++|+.+++.+.++.
T Consensus 706 l~~~~~e~---------------------------~~~~kilaD~~EAliGAiylD~G~~--~a~~~v~~~~~~~l~~ 754 (756)
T 2qvw_A 706 IIESHPKI---------------------------QPDSKVYGDTFEAILAAILLACGEE--AAGAFVREHVLPQVVA 754 (756)
T ss_dssp HHHHSTTC---------------------------CTTCSHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHTGGGCCC
T ss_pred HhcCchhh---------------------------cCCccHHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHhhc
Confidence 99876542 1569999999999999999999975 6788899888887654
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=470.95 Aligned_cols=607 Identities=22% Similarity=0.316 Sum_probs=320.5
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH
Q 000174 294 EAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR 372 (1931)
Q Consensus 294 ~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~ 372 (1931)
+++..+++.+||+||.++++.++. +|+|+++|||+|||++|++++.+.+.... .+.+.++|||+||++|+.||.++++
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~-~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-QGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC-TTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc-cCCCCeEEEEECCHHHHHHHHHHHH
Confidence 456778999999999999999988 89999999999999999999988776421 1223679999999999999999999
Q ss_pred HHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccc-cccceeEEEEeCCCcccCCCcHHHHH
Q 000174 373 EQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSII-KMEAINLLILDECHHAVKKHPYSLVM 448 (1931)
Q Consensus 373 ~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l-~l~~i~lLV~DEaH~~~~~~~~~~im 448 (1931)
+++ ++++..++|+..... .|.....+++|+|+||++|.+.+.++.+ .+.++++|||||||++.+.++|..++
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~----~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~ 158 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENV----PVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIM 158 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSS----CHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHH
T ss_pred HHhccCCceEEEEeCCccccc----cHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHH
Confidence 987 799999999876432 2333446799999999999999998877 79999999999999999989999998
Q ss_pred HHHHhhc---CCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEe--cchHHHhhhCCCCceeEEEeccc
Q 000174 449 SEFYHTT---SKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTI--KDRKELEKHVPMPSEVVVEYDKA 523 (1931)
Q Consensus 449 ~~~~~~~---~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~--~~~~~l~~~~~~p~e~~~~y~~~ 523 (1931)
..++... .....|++|+|||||..++. .+..+....+..+...++..+... ....++..++..|......+...
T Consensus 159 ~~~l~~~~~~~~~~~~~il~LTATp~~~~~-~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~ 237 (696)
T 2ykg_A 159 FNYLDQKLGGSSGPLPQVIGLTASVGVGDA-KTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESR 237 (696)
T ss_dssp HHHHHHHHTTCCSCCCEEEEEESCCCCSSC-CSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCC
T ss_pred HHHHHHhhcccCCCCCeEEEEeCccccCcc-ccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcc
Confidence 8776642 11245999999999986554 344555667777777777766554 45678888999998776655432
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhh-hhhhhcccccchhhHHHHhhhccc------ccccchhhHHHHHHHHHHHHHH
Q 000174 524 ASLWSLHEQLKQMEVAVEEAAQSSSRR-SKWQFMGARDAGAKEELRQVYGVS------ERTESDGAANLIQKLRAINYAL 596 (1931)
Q Consensus 524 ~~~~~l~~~i~~l~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~~~~~~~------~r~~~~~~~~l~~~~~~~~~~l 596 (1931)
. ...+...+..+...+.......... ........+..+.......+.... ..........+...+. ...
T Consensus 238 ~-~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~ 313 (696)
T 2ykg_A 238 I-SDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF---LYT 313 (696)
T ss_dssp S-CCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHH---HHH
T ss_pred c-CChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHH---HHH
Confidence 1 1122222222222222111100000 000001111111111111110000 0000000000000000 001
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccc
Q 000174 597 GELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGE 676 (1931)
Q Consensus 597 ~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 676 (1931)
..+..+.....+ . .. ........|+......+... . ...+....
T Consensus 314 ~~l~~~~~~~~i----~---~~------~~~~~~~~~l~~~~~~~~~~----~-------------------~~~~~~~~ 357 (696)
T 2ykg_A 314 SHLRKYNDALII----S---EH------ARMKDALDYLKDFFSNVRAA----G-------------------FDEIEQDL 357 (696)
T ss_dssp HHHHHHHHHHHH----H---HH------SCHHHHHHHHHHHHHHHHTT----C-------------------CCHHHHHH
T ss_pred HHHHHHhHHHhc----c---ch------hhHHHHHHHHHHHHHHHhhc----c-------------------cchHHHHH
Confidence 111111000000 0 00 00000011222211111000 0 00000000
Q ss_pred ccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHh-cCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEE
Q 000174 677 LLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKY-QHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASL 755 (1931)
Q Consensus 677 l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~-~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l 755 (1931)
... ..+...............++|+..|.++|... ...++.++||||+++.+++.|++.|...+.+.++++..+
T Consensus 358 ~~~-----~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l 432 (696)
T 2ykg_A 358 TQR-----FEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGIL 432 (696)
T ss_dssp HHH-----HHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-
T ss_pred HHH-----HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEE
Confidence 000 00000000000001113478999999999875 334568999999999999999999998654555899999
Q ss_pred EccCC---CccccHHHHHHHHHHhhc-CCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc-EEE
Q 000174 756 IGHNN---SQEMRTFQMQETIAKFRD-GRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD-YIL 830 (1931)
Q Consensus 756 ~G~~~---~~~~~~~~R~~~l~~Fr~-G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~-~iv 830 (1931)
||++. .++|++.+|++++++|++ |+++|||||+++++|||+|+|++||+||+|+|+.+|+||+|| ||.... +++
T Consensus 433 ~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~~~g~~~~ 511 (696)
T 2ykg_A 433 TGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFL 511 (696)
T ss_dssp ----------------------------CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC----------CCCEEEE
T ss_pred EccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcCCCceEEE
Confidence 77432 238999999999999998 999999999999999999999999999999999999999999 887544 444
Q ss_pred EEecCChhHHHHHHHHHHHHHHHHHHHH------------------------hhcccccc-cccc----cccccCCC---
Q 000174 831 MIERGNLSHATFLRNARNSEETLRKEAI------------------------ERTDLSHL-KDTS----RLISVDAV--- 878 (1931)
Q Consensus 831 lv~~~~~~~~~~l~~~~~~e~~l~~~~i------------------------~r~~l~~~-~~~~----~~~~~~~~--- 878 (1931)
++..++......+ ...++.|.+..+ .+...... +... ......+.
T Consensus 512 l~~~~~~~~~~~~---~~~~e~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~ 588 (696)
T 2ykg_A 512 LTSNAGVIEKEQI---NMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALA 588 (696)
T ss_dssp EESCHHHHHHHHH---HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCSCEEEEESSSCCEE
T ss_pred EecCCCHHHHHHH---HHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHhhccCCcccccchhhhccCCCcee
Confidence 4444332211111 111111100000 00000000 0000 00000000
Q ss_pred -CCccceeCCCCcEEcccchHHHHHHHhhcCCC-----CCCCccCceEEEE--ecCCCCCCce-EEEEEEcC---CCCCC
Q 000174 879 -PGTVYQVESTGAVVSLNSAVGLIHFYCSQLPS-----DRYSILRPEFIME--RHEKPGGPTE-YSCKLQLP---CNAPF 946 (1931)
Q Consensus 879 -~~~~y~v~~tgA~lt~~~Ai~ll~~yC~~Lp~-----d~~~~~~P~~~~~--~~~~~~~~~~-~~~~v~LP---~~~p~ 946 (1931)
+....++-..+..++++++ +.++||+.+|+ +.|+...|. ... ..+..-|..+ |+ ++.|| +++++
T Consensus 589 ~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~c~~~~c~~~~g~~~~~~-~~~lp~~~~~~~~ 664 (696)
T 2ykg_A 589 CYTADVRVIEDCHYTVLGDA--FKECFVSRPHPKPKQFSSFEKRAKI-FCARQNCSHDWGIHVKYK-TFEIPVIKIESFV 664 (696)
T ss_dssp EEGGGEEEETTTEEEECSTT--GGGTEEEEEEEEEEECSSCEEEEEE-EESSTTTCCEEEEEEEET-TEEEEEECGGGEE
T ss_pred eecchhhhhcCCCeeecCHH--hHhHeeeccCCccccccccccCCce-EeCCCCCCccccceEEEc-ceecceeeeeeEE
Confidence 0011123346778888888 89999999988 778777665 232 1221222233 44 88999 88887
Q ss_pred C-c-ccCCCCCCHHH
Q 000174 947 E-K-LEGPVCSSMRL 959 (1931)
Q Consensus 947 ~-~-~~g~~~~sk~~ 959 (1931)
. . ..|.++.-+|+
T Consensus 665 ~~~~~~~~~~~~~~w 679 (696)
T 2ykg_A 665 VEDIATGVQTLYSKW 679 (696)
T ss_dssp EEETTTCCEEECSCG
T ss_pred EEecCCCcchhhhhh
Confidence 5 3 45655444444
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-41 Score=447.04 Aligned_cols=477 Identities=23% Similarity=0.382 Sum_probs=260.4
Q ss_pred CCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc--
Q 000174 299 MPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT-- 375 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~-- 375 (1931)
++..+|||||.++++.++. +|+|++++||+|||++|++|+.+.+.... .+.+.++||||||++|+.||.+++++++
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-AGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-SSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc-ccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4567899999999999988 89999999999999999999988776421 1225679999999999999999999975
Q ss_pred -CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccc-cccceeEEEEeCCCcccCCCcHHHHHHHHHh
Q 000174 376 -GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSII-KMEAINLLILDECHHAVKKHPYSLVMSEFYH 453 (1931)
Q Consensus 376 -~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l-~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~ 453 (1931)
++++..++|+.... ..|.....+++|+|+||++|.+.+.++.+ .+.++++|||||||++.+.++|..++..++.
T Consensus 82 ~~~~~~~~~g~~~~~----~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~ 157 (556)
T 4a2p_A 82 QGYSVQGISGENFSN----VSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 157 (556)
T ss_dssp GTCCEEECCCC---------CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHH
T ss_pred cCceEEEEeCCCCcc----hhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHH
Confidence 79999999987543 33445556799999999999999999887 8999999999999999988889988877776
Q ss_pred hcCC--CCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCe-EEEec-chHHHhhhCCCCceeEEEeccchhhhHH
Q 000174 454 TTSK--EKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSV-VCTIK-DRKELEKHVPMPSEVVVEYDKAASLWSL 529 (1931)
Q Consensus 454 ~~~~--~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~-i~t~~-~~~~l~~~~~~p~e~~~~y~~~~~~~~l 529 (1931)
.... ...+++|+|||||...+. ....+....+..++..++.. +.+.. ....+..++..|......+... ....+
T Consensus 158 ~~~~~~~~~~~~l~lSAT~~~~~~-~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 235 (556)
T 4a2p_A 158 QKFNSASQLPQILGLTASVGVGNA-KNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRR-IHNPF 235 (556)
T ss_dssp HHHCC---CCEEEEEESCCCCTTC-SSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCC-SCCHH
T ss_pred hhhcccCCCCeEEEEeCCcccCch-hhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCC-cCChH
Confidence 4322 235899999999975443 23445556788888888854 44443 5677888899998887776632 11223
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhccc------ccccchhhHHHHHHHHH----------HH
Q 000174 530 HEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVS------ERTESDGAANLIQKLRA----------IN 593 (1931)
Q Consensus 530 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~------~r~~~~~~~~l~~~~~~----------~~ 593 (1931)
...+..+...+.....................+.......+..+. ..........+...+.. ..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (556)
T 4a2p_A 236 AAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDAL 315 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333322222110000000000001111100000000000 00000000000000000 00
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccc
Q 000174 594 YALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIE 673 (1931)
Q Consensus 594 ~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 673 (1931)
......+.+.+...+..++..+.... .. .....+...+..
T Consensus 316 ~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~-~~~~~~~~~~~~---------------------------------- 355 (556)
T 4a2p_A 316 IISEDARIIDALSYLTEFFTNVKNGP-----YT-ELEQHLTAKFQE---------------------------------- 355 (556)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHSC-----CC-HHHHHHHHHHHT----------------------------------
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHhcC-----CC-HHHHHHHHHHhh----------------------------------
Confidence 01111111222111111111110000 00 000000000000
Q ss_pred cccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHh-cCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCcee
Q 000174 674 EGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKY-QHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKS 752 (1931)
Q Consensus 674 ~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~-~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~ 752 (1931)
...+...........++|+..|.++|.+. ....+.++||||+++.+++.|++.|...+.+.++++
T Consensus 356 --------------~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~ 421 (556)
T 4a2p_A 356 --------------KEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKP 421 (556)
T ss_dssp --------------THHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCE
T ss_pred --------------HHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeee
Confidence 00000001111224589999999999764 224678999999999999999999998655556777
Q ss_pred EEEEccCC---CccccHHHHHHHHHHhhc-CCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc-
Q 000174 753 ASLIGHNN---SQEMRTFQMQETIAKFRD-GRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD- 827 (1931)
Q Consensus 753 ~~l~G~~~---~~~~~~~~R~~~l~~Fr~-G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~- 827 (1931)
..++|.+. .++|++.+|.+++++|++ |+++|||||+++++|||+|+|++||+||+|||+.+|+||+|| ||.+..
T Consensus 422 ~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~~~g~ 500 (556)
T 4a2p_A 422 GVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSK 500 (556)
T ss_dssp EC------------------------------CCEEEEEC-----------CEEEEETCCSCHHHHHHC---------CC
T ss_pred eEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCCCCce
Confidence 77777432 137999999999999999 999999999999999999999999999999999999999999 776433
Q ss_pred EEEEEecCCh
Q 000174 828 YILMIERGNL 837 (1931)
Q Consensus 828 ~ivlv~~~~~ 837 (1931)
+++|+..++.
T Consensus 501 ~~~l~~~~~~ 510 (556)
T 4a2p_A 501 CILVTSKTEV 510 (556)
T ss_dssp EEEEESCHHH
T ss_pred EEEEEeCcch
Confidence 5555554443
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=451.84 Aligned_cols=477 Identities=23% Similarity=0.377 Sum_probs=269.8
Q ss_pred CCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc--
Q 000174 299 MPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT-- 375 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~-- 375 (1931)
.++..|||||.++++.++. +|+|++++||+|||++|++++.+.+.... .+.++++||||||++|+.||.+++++++
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~-~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-AGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-SSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-ccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 5688999999999999988 99999999999999999999988876421 1225679999999999999999999975
Q ss_pred -CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccc-cccceeEEEEeCCCcccCCCcHHHHHHHHHh
Q 000174 376 -GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSII-KMEAINLLILDECHHAVKKHPYSLVMSEFYH 453 (1931)
Q Consensus 376 -~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l-~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~ 453 (1931)
++++..++|+.... ..|.....+++|+|+||++|.+.+.++.+ .+.++++|||||||++.+.++|..++..+..
T Consensus 323 ~~~~v~~~~g~~~~~----~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~ 398 (797)
T 4a2q_A 323 QGYSVQGISGENFSN----VSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (797)
T ss_dssp GTCCEEEECCC---------CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHH
T ss_pred CCceEEEEeCCcchh----hhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHH
Confidence 89999999987543 23445557899999999999999998877 8999999999999999998899999887776
Q ss_pred hcCC--CCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCe-EEEec-chHHHhhhCCCCceeEEEeccchhhhHH
Q 000174 454 TTSK--EKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSV-VCTIK-DRKELEKHVPMPSEVVVEYDKAASLWSL 529 (1931)
Q Consensus 454 ~~~~--~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~-i~t~~-~~~~l~~~~~~p~e~~~~y~~~~~~~~l 529 (1931)
.... ...+++|+|||||...+. .+.......+..|+..++.. +.+.. ....+..++..|......+... ....+
T Consensus 399 ~~~~~~~~~~~~l~lSATp~~~~~-~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~ 476 (797)
T 4a2q_A 399 QKFNSASQLPQILGLTASVGVGNA-KNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRR-IHNPF 476 (797)
T ss_dssp HHHTTCCCCCEEEEEESCCCCTTC-CSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCC-SCCHH
T ss_pred HhhccCCCCCeEEEEcCCcccccc-ccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCC-CCcHH
Confidence 5321 345899999999975443 33445566788888889864 44443 4577788899998877766632 11223
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcc------cccccchhhHHHHHHHHHH----------H
Q 000174 530 HEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGV------SERTESDGAANLIQKLRAI----------N 593 (1931)
Q Consensus 530 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~------~~r~~~~~~~~l~~~~~~~----------~ 593 (1931)
...+..+...+...............+.....+.......+... ...........+...+... .
T Consensus 477 ~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 556 (797)
T 4a2q_A 477 AAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDAL 556 (797)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333333332222211000000000000001110000000000 0000000000000000000 0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccc
Q 000174 594 YALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIE 673 (1931)
Q Consensus 594 ~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 673 (1931)
......+.+.+...+..++....... .. .....+......
T Consensus 557 ~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~-~~~~~l~~~~~~---------------------------------- 596 (797)
T 4a2q_A 557 IISEDARIIDALSYLTEFFTNVKNGP-----YT-ELEQHLTAKFQE---------------------------------- 596 (797)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHTT-----CC-HHHHHHHHHHHT----------------------------------
T ss_pred hhhccccHHHHHHHHHHHHHHHhccC-----cc-HHHHHHHHHHHH----------------------------------
Confidence 01111111122111111111110000 00 000000000000
Q ss_pred cccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHh-cCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCcee
Q 000174 674 EGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKY-QHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKS 752 (1931)
Q Consensus 674 ~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~-~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~ 752 (1931)
...............++|+..|.++|.+. ....+.++||||+++.+++.|+++|...+.+.++++
T Consensus 597 --------------~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~ 662 (797)
T 4a2q_A 597 --------------KEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKP 662 (797)
T ss_dssp --------------THHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCC
T ss_pred --------------HHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccc
Confidence 00000001111224589999999999874 335678999999999999999999998766667777
Q ss_pred EEEEccCC---CccccHHHHHHHHHHhhc-CCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc-
Q 000174 753 ASLIGHNN---SQEMRTFQMQETIAKFRD-GRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD- 827 (1931)
Q Consensus 753 ~~l~G~~~---~~~~~~~~R~~~l~~Fr~-G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~- 827 (1931)
..++|.+. .++|++.+|.+++++|++ |+++|||||+++++|||+|+|++||+||+|||+.+|+||+|| ||....
T Consensus 663 ~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~~~g~ 741 (797)
T 4a2q_A 663 GVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSK 741 (797)
T ss_dssp EEC----------------------------CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC--------CCC
T ss_pred eEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCCCCce
Confidence 77777432 237999999999999999 999999999999999999999999999999999999999999 776433
Q ss_pred EEEEEecCCh
Q 000174 828 YILMIERGNL 837 (1931)
Q Consensus 828 ~ivlv~~~~~ 837 (1931)
+++|+..++.
T Consensus 742 ~i~l~~~~~~ 751 (797)
T 4a2q_A 742 CILVTSKTEV 751 (797)
T ss_dssp EEEEECCHHH
T ss_pred EEEEEeCCcH
Confidence 5555554443
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-41 Score=427.67 Aligned_cols=342 Identities=20% Similarity=0.239 Sum_probs=263.0
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhh--cCCCcEEEEE
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQR--QNKKMLAVFL 357 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~--~~~~~~vL~L 357 (1931)
.+|.+.+..+...+.+.+.++.+|||+|.++++.+++ +|+|++++||||||++|++|+.+.+..... ...+.++|||
T Consensus 56 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil 135 (434)
T 2db3_A 56 QHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIV 135 (434)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEE
T ss_pred CChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEE
Confidence 3455555444456889999999999999999999998 999999999999999999998877654311 1235679999
Q ss_pred eCChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeC
Q 000174 358 VPKVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDE 434 (1931)
Q Consensus 358 vPT~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DE 434 (1931)
+||++|+.||+++++++. ++++..++|+.... ..+.....+++|+|+||++|.+++.++.+.+.++++|||||
T Consensus 136 ~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~----~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDE 211 (434)
T 2db3_A 136 SPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFR----HQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDE 211 (434)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHH----HHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEET
T ss_pred ecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHH----HHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEcc
Confidence 999999999999999875 57888999987642 33444456899999999999999999888999999999999
Q ss_pred CCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCc
Q 000174 435 CHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPS 514 (1931)
Q Consensus 435 aH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~ 514 (1931)
||++.+. +|...+..+..........+++++|||+.. .+..+.. .+...|.
T Consensus 212 ah~~~~~-gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~------------~~~~~~~----------------~~l~~~~ 262 (434)
T 2db3_A 212 ADRMLDM-GFSEDMRRIMTHVTMRPEHQTLMFSATFPE------------EIQRMAG----------------EFLKNYV 262 (434)
T ss_dssp HHHHTST-TTHHHHHHHHHCTTSCSSCEEEEEESCCCH------------HHHHHHH----------------TTCSSCE
T ss_pred Hhhhhcc-CcHHHHHHHHHhcCCCCCceEEEEeccCCH------------HHHHHHH----------------HhccCCE
Confidence 9999984 788887777765433345899999999752 2222211 1111111
Q ss_pred eeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHH
Q 000174 515 EVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINY 594 (1931)
Q Consensus 515 e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~ 594 (1931)
...+.....
T Consensus 263 ~i~~~~~~~----------------------------------------------------------------------- 271 (434)
T 2db3_A 263 FVAIGIVGG----------------------------------------------------------------------- 271 (434)
T ss_dssp EEEESSTTC-----------------------------------------------------------------------
T ss_pred EEEeccccc-----------------------------------------------------------------------
Confidence 110000000
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccc
Q 000174 595 ALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEE 674 (1931)
Q Consensus 595 ~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 674 (1931)
....+.
T Consensus 272 -------------------------------------------------------------------------~~~~i~- 277 (434)
T 2db3_A 272 -------------------------------------------------------------------------ACSDVK- 277 (434)
T ss_dssp -------------------------------------------------------------------------CCTTEE-
T ss_pred -------------------------------------------------------------------------cccccc-
Confidence 000000
Q ss_pred ccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEE
Q 000174 675 GELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSAS 754 (1931)
Q Consensus 675 ~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~ 754 (1931)
+.+.......|...|+++|... ..++||||+++..|+.|++.|.. .++.+..
T Consensus 278 --------------------~~~~~~~~~~k~~~l~~~l~~~----~~~~lVF~~t~~~a~~l~~~L~~----~~~~~~~ 329 (434)
T 2db3_A 278 --------------------QTIYEVNKYAKRSKLIEILSEQ----ADGTIVFVETKRGADFLASFLSE----KEFPTTS 329 (434)
T ss_dssp --------------------EEEEECCGGGHHHHHHHHHHHC----CTTEEEECSSHHHHHHHHHHHHH----TTCCEEE
T ss_pred --------------------eEEEEeCcHHHHHHHHHHHHhC----CCCEEEEEeCcHHHHHHHHHHHh----CCCCEEE
Confidence 0000001234677788888764 23499999999999999999998 6889999
Q ss_pred EEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE--EEEE
Q 000174 755 LIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY--ILMI 832 (1931)
Q Consensus 755 l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~--ivlv 832 (1931)
+|| ++++.+|++++++|++|+.+|||||+++++|||+|+|++||+||+|+++.+|+||+|||||.|+.+ ++++
T Consensus 330 lhg-----~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~ 404 (434)
T 2db3_A 330 IHG-----DRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFF 404 (434)
T ss_dssp EST-----TSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEE
T ss_pred EeC-----CCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEE
Confidence 999 999999999999999999999999999999999999999999999999999999999999999874 3444
Q ss_pred e
Q 000174 833 E 833 (1931)
Q Consensus 833 ~ 833 (1931)
.
T Consensus 405 ~ 405 (434)
T 2db3_A 405 D 405 (434)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=436.82 Aligned_cols=474 Identities=26% Similarity=0.395 Sum_probs=284.8
Q ss_pred CCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc---CC
Q 000174 302 EQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT---GY 377 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~---~l 377 (1931)
.+|||||.++++.++. +++|++++||+|||++|++++.+.+.... .+.+.++|||+||++|+.||.+++++++ ++
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 81 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-CGQKGKVVFFANQIPVYEQQATVFSRYFERLGY 81 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-SSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-cCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCc
Confidence 6899999999999988 99999999999999999999988776421 1225679999999999999999999975 89
Q ss_pred cEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccc-cccceeEEEEeCCCcccCCCcHHHHHHHHHhhcC
Q 000174 378 VVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSII-KMEAINLLILDECHHAVKKHPYSLVMSEFYHTTS 456 (1931)
Q Consensus 378 ~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l-~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~ 456 (1931)
++..++|+.... ..|.....+++|+|+||++|.+.+.++.+ .+.++++|||||||++.+.++|..++..++....
T Consensus 82 ~~~~~~g~~~~~----~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~ 157 (555)
T 3tbk_A 82 NIASISGATSDS----VSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKL 157 (555)
T ss_dssp CEEEECTTTGGG----SCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCcch----hhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhh
Confidence 999999987543 23444456799999999999999998877 7999999999999999998889998877776532
Q ss_pred C---CCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCC-eEEEec-chHHHhhhCCCCceeEEEeccchhhhHHHH
Q 000174 457 K---EKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDS-VVCTIK-DRKELEKHVPMPSEVVVEYDKAASLWSLHE 531 (1931)
Q Consensus 457 ~---~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~-~i~t~~-~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~ 531 (1931)
. ...+++++|||||...+. .........+..++..++. .+.+.. ....+..++..|......+... ....+..
T Consensus 158 ~~~~~~~~~~l~lSAT~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~ 235 (555)
T 3tbk_A 158 GESRDPLPQVVGLTASVGVGDA-KTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASR-TSNTFKC 235 (555)
T ss_dssp SSCCSCCCEEEEEESCCCCTTC-CSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCC-SCCHHHH
T ss_pred ccccCCCCeEEEEecCcccCcc-ccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCc-ccChHHH
Confidence 1 245899999999986443 3344556678888899995 455543 5678888899998877766632 1123333
Q ss_pred HHHHHHHHHHHHHhhhhhh-hhhhhcccccchhhHHHHhhhc------ccccccchhhHHHHHHHHHH----------HH
Q 000174 532 QLKQMEVAVEEAAQSSSRR-SKWQFMGARDAGAKEELRQVYG------VSERTESDGAANLIQKLRAI----------NY 594 (1931)
Q Consensus 532 ~i~~l~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~~~~~------~~~r~~~~~~~~l~~~~~~~----------~~ 594 (1931)
.+..+...+.......... ...........+.......+.. ............+...+... ..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 315 (555)
T 3tbk_A 236 IISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALI 315 (555)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333222210000 0000000011111000000000 00000000000011111100 00
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccc
Q 000174 595 ALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEE 674 (1931)
Q Consensus 595 ~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 674 (1931)
.....+.+.+...+..+......... ......+...+....
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~--------------------------------- 356 (555)
T 3tbk_A 316 ISEDAQMTDALNYLKAFFHDVREAAF------DETERELTRRFEEKL--------------------------------- 356 (555)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHCC-----------HHHHHHHHHHTTH---------------------------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhccc------chHHHHHHHHHhhhh---------------------------------
Confidence 11111111111111111111100000 000000000000000
Q ss_pred ccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHh-cCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeE
Q 000174 675 GELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKY-QHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSA 753 (1931)
Q Consensus 675 ~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~-~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~ 753 (1931)
.............++|+..|.++|... ....+.++||||+++.+++.|++.|...+...++++.
T Consensus 357 ---------------~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~ 421 (555)
T 3tbk_A 357 ---------------EELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPG 421 (555)
T ss_dssp ---------------HHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEE
T ss_pred ---------------hhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeee
Confidence 000000001113478999999999875 3345789999999999999999999986433456777
Q ss_pred EEEccCCC---ccccHHHHHHHHHHhhc-CCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCC-CCcE
Q 000174 754 SLIGHNNS---QEMRTFQMQETIAKFRD-GRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKP-GSDY 828 (1931)
Q Consensus 754 ~l~G~~~~---~~~~~~~R~~~l~~Fr~-G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~-Gs~~ 828 (1931)
.+||.+.. ++|++.+|.+++++|++ |+++|||||+++++|||+|+|++||+||+|||+.+|+||+|| ||. +..+
T Consensus 422 ~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~~~g~~ 500 (555)
T 3tbk_A 422 ILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRARDSKC 500 (555)
T ss_dssp ECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTTTSCEE
T ss_pred EEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcCCCceE
Confidence 77764322 38999999999999999 999999999999999999999999999999999999999999 665 3346
Q ss_pred EEEEecCCh
Q 000174 829 ILMIERGNL 837 (1931)
Q Consensus 829 ivlv~~~~~ 837 (1931)
++|+..++.
T Consensus 501 ~~l~~~~~~ 509 (555)
T 3tbk_A 501 FLLTSSADV 509 (555)
T ss_dssp EEEESCHHH
T ss_pred EEEEcCCCH
Confidence 666654443
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=450.54 Aligned_cols=476 Identities=28% Similarity=0.374 Sum_probs=299.7
Q ss_pred CCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHH-HHHHHHHcC--
Q 000174 301 EEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQ-AEVIREQTG-- 376 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~-~~~l~~~~~-- 376 (1931)
..+||+||.++++.+++ +++|++++||+|||++|++++.+++......+.+.++|||+|+++|+.|| .++++++++
T Consensus 5 ~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~ 84 (699)
T 4gl2_A 5 MLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKW 84 (699)
T ss_dssp --CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTT
T ss_pred CCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcC
Confidence 46899999999999999 89999999999999999999998887654334446799999999999999 999999886
Q ss_pred CcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHH------hcccccccceeEEEEeCCCcccCCCcHHHHHHH
Q 000174 377 YVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNIL------RHSIIKMEAINLLILDECHHAVKKHPYSLVMSE 450 (1931)
Q Consensus 377 l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L------~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~ 450 (1931)
+++..++|+..... .|.......+|+|+||++|.+.+ ..+.+.+..+++|||||||++...+.|..++..
T Consensus 85 ~~v~~~~g~~~~~~----~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~ 160 (699)
T 4gl2_A 85 YRVIGLSGDTQLKI----SFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRH 160 (699)
T ss_dssp SCEEEEC----CCC----CHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHH
T ss_pred ceEEEEeCCcchhh----HHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHH
Confidence 89999999876532 33344478999999999999988 455678899999999999999887788888876
Q ss_pred HHhhcC-----------CCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCC-eEEEec-chHHHhhhCCCCceeE
Q 000174 451 FYHTTS-----------KEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDS-VVCTIK-DRKELEKHVPMPSEVV 517 (1931)
Q Consensus 451 ~~~~~~-----------~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~-~i~t~~-~~~~l~~~~~~p~e~~ 517 (1931)
++.... ....|++|+|||||...+. .+.......+..+...++. .+.+.. +...+..++..|....
T Consensus 161 ~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~-~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~ 239 (699)
T 4gl2_A 161 YLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGA-TKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKF 239 (699)
T ss_dssp HHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSC-CSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEE
T ss_pred HHHhhhcccccccccccCCCCCEEEEeccccccccc-ccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEE
Confidence 665321 1134899999999997543 3344556678888888887 665553 4577888899988776
Q ss_pred EEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcc-------cccccchhhHHHHHHHH
Q 000174 518 VEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGV-------SERTESDGAANLIQKLR 590 (1931)
Q Consensus 518 ~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-------~~r~~~~~~~~l~~~~~ 590 (1931)
..+... ....+...+..+...+........ .++.+.......+..+ ..+........+ ..+.
T Consensus 240 ~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~ 308 (699)
T 4gl2_A 240 AIADAT-REDPFKEKLLEIMTRIQTYCQMSP---------MSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHL-RKYN 308 (699)
T ss_dssp EEEC------CHHHHHHHHHHHHHHHHTCCC---------CSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHH-HHHH
T ss_pred EEcccc-cCChHHHHHHHHHHHHHHHhccCc---------chhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHH-HHHH
Confidence 665432 122333344444333333221100 0111110000000000 000000001111 1122
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhh------hHHHHHHHHHHHHHHhhhhhhhccccccccccccccccc
Q 000174 591 AINYALGELGQWCAYKVAQSFLTALQNDERANYQL------DVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGF 664 (1931)
Q Consensus 591 ~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~------~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~ 664 (1931)
........++.+.+...+..++............. ...-...++..........+
T Consensus 309 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l------------------- 369 (699)
T 4gl2_A 309 EALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKML------------------- 369 (699)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHH-------------------
Confidence 22223344444555444443333322111000000 00000011111111000000
Q ss_pred ccCCccccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHh-cCCC-CceEEEEEeehhHHHHHHHHHh
Q 000174 665 VEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKY-QHTE-DFRAIIFVERVVAALVLPKVFA 742 (1931)
Q Consensus 665 ~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~-~~~~-~~k~IIFv~~r~ta~~L~~~L~ 742 (1931)
..........++|+..|+++|... ...+ +.++||||+++.+++.|++.|.
T Consensus 370 ----------------------------~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~ 421 (699)
T 4gl2_A 370 ----------------------------KRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWIT 421 (699)
T ss_dssp ----------------------------HHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHH
T ss_pred ----------------------------HHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHH
Confidence 000001112456777788877763 2233 7899999999999999999999
Q ss_pred cCCCC--CCceeEEEEccCCC---ccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHh
Q 000174 743 ELPSL--SFVKSASLIGHNNS---QEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQS 817 (1931)
Q Consensus 743 ~~~~l--~~~~~~~l~G~~~~---~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr 817 (1931)
..+.+ .++++..+||.+.. .+|++.+|.+++++|++|+++|||||+++++|||+|+|++||+||+|||+.+|+||
T Consensus 422 ~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr 501 (699)
T 4gl2_A 422 ENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQA 501 (699)
T ss_dssp SSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHH
T ss_pred hCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHH
Confidence 85443 26899999993111 12999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCcEEEEEecCChhH
Q 000174 818 RGRARKPGSDYILMIERGNLSH 839 (1931)
Q Consensus 818 ~GRa~R~Gs~~ivlv~~~~~~~ 839 (1931)
+|||||.|..++++...+....
T Consensus 502 ~GRArr~g~~~~l~~~~~~~~~ 523 (699)
T 4gl2_A 502 RGRARADESTYVLVAHSGSGVI 523 (699)
T ss_dssp HTTSCSSSCEEEEEEESSSCSH
T ss_pred cCCCCCCCceEEEEEeCCchHH
Confidence 9999999988888877666543
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=448.92 Aligned_cols=476 Identities=24% Similarity=0.382 Sum_probs=269.3
Q ss_pred CCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc--
Q 000174 299 MPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT-- 375 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~-- 375 (1931)
.++.+||+||.++++.+++ +|+|++++||+|||++|++++.+.+.... .+.+.++|||+||++|+.||.+++++++
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~-~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-AGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC-SSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc-ccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4578999999999999988 99999999999999999999987665321 1125679999999999999999999975
Q ss_pred -CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccc-cccceeEEEEeCCCcccCCCcHHHHHHHHHh
Q 000174 376 -GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSII-KMEAINLLILDECHHAVKKHPYSLVMSEFYH 453 (1931)
Q Consensus 376 -~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l-~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~ 453 (1931)
++++..++|+..... .+.....+++|+|+||++|.+.+.++.+ .+.++++|||||||++.+.++|..++..+..
T Consensus 323 ~~~~v~~~~G~~~~~~----~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~ 398 (936)
T 4a2w_A 323 QGYSVQGISGENFSNV----SVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (936)
T ss_dssp TTCCEEEECCC---------CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred cCceEEEEECCcchhh----HHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHH
Confidence 799999999875432 2333345789999999999999998877 7899999999999999998899999887776
Q ss_pred hcC--CCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCe-EEEe-cchHHHhhhCCCCceeEEEeccchhhhHH
Q 000174 454 TTS--KEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSV-VCTI-KDRKELEKHVPMPSEVVVEYDKAASLWSL 529 (1931)
Q Consensus 454 ~~~--~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~-i~t~-~~~~~l~~~~~~p~e~~~~y~~~~~~~~l 529 (1931)
... ....+++|+|||||...+. .+.......+..|+..++.. +.+. .+...+..++..|......+... ....+
T Consensus 399 ~~~~~~~~~~~~l~LSATp~~~~~-~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~-~~~~~ 476 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVGVGNA-KNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRR-IHNPF 476 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCCCTTC-CSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCC-SCCHH
T ss_pred HhhccCCCcCeEEEecCCcccccc-hhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccc-cCcHH
Confidence 431 1345899999999975443 33445667888899999964 4444 34577888899998877766632 11223
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhh---------cccccccch-hhHHH---H---HHHHHHH
Q 000174 530 HEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVY---------GVSERTESD-GAANL---I---QKLRAIN 593 (1931)
Q Consensus 530 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~---------~~~~r~~~~-~~~~l---~---~~~~~~~ 593 (1931)
...+..+...+...............+..+..+.......+. .+....... ....+ . ..+....
T Consensus 477 ~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al 556 (936)
T 4a2w_A 477 AAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDAL 556 (936)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 333333333322221110000000000000111100000000 000000000 00000 0 0001111
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccc
Q 000174 594 YALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIE 673 (1931)
Q Consensus 594 ~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 673 (1931)
......+.+.+...+..++..+.... .... ...++..+...+.
T Consensus 557 ~i~~~~~~~~~~~~l~~~~~~~~~~~--~~~~----e~~l~~~~~~~~~------------------------------- 599 (936)
T 4a2w_A 557 IISEDARIIDALSYLTEFFTNVKNGP--YTEL----EQHLTAKFQEKEP------------------------------- 599 (936)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHTT--CCHH----HHHHHHHHHHHHH-------------------------------
T ss_pred hhhcchhHHHHHHHHHHHHHHHhhcc--CCHH----HHHHHHHHHHHHH-------------------------------
Confidence 11111122222222211111110000 0000 0000000000000
Q ss_pred cccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHh-cCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCcee
Q 000174 674 EGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKY-QHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKS 752 (1931)
Q Consensus 674 ~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~-~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~ 752 (1931)
............++|+..|.++|.+. ....+.++||||+++.+++.|+++|...+.+.++++
T Consensus 600 -----------------~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~ 662 (936)
T 4a2w_A 600 -----------------ELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKP 662 (936)
T ss_dssp -----------------HHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCC
T ss_pred -----------------HHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccce
Confidence 00000111224589999999999875 345678999999999999999999998766667777
Q ss_pred EEEEccCC---CccccHHHHHHHHHHhhc-CCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc-
Q 000174 753 ASLIGHNN---SQEMRTFQMQETIAKFRD-GRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD- 827 (1931)
Q Consensus 753 ~~l~G~~~---~~~~~~~~R~~~l~~Fr~-G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~- 827 (1931)
..++|.+. .++|++.+|.+++++|++ |+++|||||+++++|||+|+|++||+||+|||+.+|+||+|| ||....
T Consensus 663 ~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~~~g~ 741 (936)
T 4a2w_A 663 GVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSK 741 (936)
T ss_dssp EEC----------------------------CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC--------CCC
T ss_pred eEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCCCCCE
Confidence 77777432 237999999999999998 999999999999999999999999999999999999999999 776443
Q ss_pred EEEEEecCC
Q 000174 828 YILMIERGN 836 (1931)
Q Consensus 828 ~ivlv~~~~ 836 (1931)
+++++..++
T Consensus 742 vi~Li~~~t 750 (936)
T 4a2w_A 742 CILVTSKTE 750 (936)
T ss_dssp EEEEESCHH
T ss_pred EEEEEeCCC
Confidence 555555443
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-38 Score=407.69 Aligned_cols=451 Identities=22% Similarity=0.301 Sum_probs=278.9
Q ss_pred CCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCC---c
Q 000174 302 EQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY---V 378 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l---~ 378 (1931)
.+|+|||.+++++++++++|++++||+|||+++++++...+.. .+.++|||||+++|+.||.++++++++. +
T Consensus 8 ~~l~~~Q~~~i~~~~~~~~ll~~~tG~GKT~~~~~~~~~~~~~-----~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~ 82 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLTK-----YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEK 82 (494)
T ss_dssp HCCCHHHHHHHHHGGGSCEEEECCTTSCHHHHHHHHHHHHHHH-----SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGG
T ss_pred CCccHHHHHHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHHHhc-----CCCeEEEEECCHHHHHHHHHHHHHHhCcchhh
Confidence 5799999999999999999999999999999999998877651 3467999999999999999999999877 8
Q ss_pred EEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCC
Q 000174 379 VGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKE 458 (1931)
Q Consensus 379 v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~ 458 (1931)
+..++|+.... .+...+..++|+|+||+.|.+.+.++.+.+.++++|||||||++.+.+.|..++..+....
T Consensus 83 v~~~~g~~~~~-----~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~--- 154 (494)
T 1wp9_A 83 IVALTGEKSPE-----ERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQA--- 154 (494)
T ss_dssp EEEECSCSCHH-----HHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHC---
T ss_pred eEEeeCCcchh-----hhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcC---
Confidence 99999987543 2333345789999999999999988888899999999999999998778888887666532
Q ss_pred CCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEe--cchHHHhhhCCCCceeEEEeccchhhhHHHHHHHHH
Q 000174 459 KRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTI--KDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQM 536 (1931)
Q Consensus 459 ~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~--~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~l 536 (1931)
..+++++|||||.+. ...+..+...++...... .....+..+..........+........+...+...
T Consensus 155 ~~~~~l~lTaTp~~~---------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (494)
T 1wp9_A 155 KNPLVIGLTASPGST---------PEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREM 225 (494)
T ss_dssp SSCCEEEEESCSCSS---------HHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEecCCCCC---------cHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHH
Confidence 348899999999841 124555666555433332 223334455554444444444333333333333222
Q ss_pred HHHHHHHHhhhhhhhhh-hhcccccc-hhhHHHHhhhcccccccchhhHHHHHHHHHHHHHH---HHHhHHHHHHHHHHH
Q 000174 537 EVAVEEAAQSSSRRSKW-QFMGARDA-GAKEELRQVYGVSERTESDGAANLIQKLRAINYAL---GELGQWCAYKVAQSF 611 (1931)
Q Consensus 537 ~~~~~~~~~~~~~~~~~-~~~~~r~~-~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l---~~lg~~~a~~~~~~~ 611 (1931)
................. ......+. ...................... .......+..+. ...+...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------- 296 (494)
T 1wp9_A 226 LRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLL-YHAMALKLHHAIELLETQGLSA-------- 296 (494)
T ss_dssp HHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHH-HHHHHHHHHHHHHHHHHTCHHH--------
T ss_pred HHHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHH-HHHHHHHHHHHHHHHHhhcHHH--------
Confidence 21111100000000000 00000000 0000000000000000000000 000000000000 0000000
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhh
Q 000174 612 LTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDV 691 (1931)
Q Consensus 612 l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~ 691 (1931)
...|+..+...... +.... ...+. .+ ..+..
T Consensus 297 ------------------~~~~~~~l~~~~~~----~~~~~----------------~~~~~----~~-------~~~~~ 327 (494)
T 1wp9_A 297 ------------------LRAYIKKLYEEAKA----GSTKA----------------SKEIF----SD-------KRMKK 327 (494)
T ss_dssp ------------------HHHHHHHHHHHHHT----TCCHH----------------HHHHH----TS-------HHHHH
T ss_pred ------------------HHHHHHHHHHhhcc----ccchh----------------hhhhh----hh-------HHHHH
Confidence 11122211111000 00000 00000 00 00000
Q ss_pred hhh---hcccCCCCCHHHHHHHHHHHHhc-CCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCC---ccc
Q 000174 692 IIG---AAVADGKVTPKVQSLIKILLKYQ-HTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNS---QEM 764 (1931)
Q Consensus 692 ~i~---~~~~~~~~s~Kv~~Li~lL~~~~-~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~---~~~ 764 (1931)
.+. ........++|+..|.++|.... ...+.++||||+++.+++.|++.|.. .++++..+||++.. .+|
T Consensus 328 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~~~~~ 403 (494)
T 1wp9_A 328 AISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVK----DGIKAKRFVGQASKENDRGL 403 (494)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHH----TTCCEEEECCSSCC------
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHH----cCCCcEEEeccccccccccC
Confidence 000 00111245789999999998752 24678999999999999999999998 57899999995322 267
Q ss_pred cHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE-EEEEecCC
Q 000174 765 RTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY-ILMIERGN 836 (1931)
Q Consensus 765 ~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~-ivlv~~~~ 836 (1931)
+..+|++++++|++|+++|||||+++++|||+|+|++||+||+|||+..|+||+|||+|.|+.. +.++..+.
T Consensus 404 ~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~g~~~~l~~~~t 476 (494)
T 1wp9_A 404 SQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIILMAKGT 476 (494)
T ss_dssp -CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCCSEEEEEEETTS
T ss_pred CHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCCceEEEEEecCC
Confidence 8889999999999999999999999999999999999999999999999999999999999873 34445544
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-38 Score=397.57 Aligned_cols=337 Identities=18% Similarity=0.214 Sum_probs=255.2
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK 360 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT 360 (1931)
.|++....+...+.+...++..|+|||.++++.+++ +++|+++|||+|||++|++++...+.. ...+.++|||+||
T Consensus 9 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~---~~~~~~~lil~P~ 85 (391)
T 1xti_A 9 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP---VTGQVSVLVMCHT 85 (391)
T ss_dssp CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC---CTTCCCEEEECSC
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc---cCCCeeEEEECCC
Confidence 344554444455888889999999999999999998 899999999999999999998766532 2335679999999
Q ss_pred hhHHHHHHHHHHHHc----CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCC
Q 000174 361 VPLVYQQAEVIREQT----GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECH 436 (1931)
Q Consensus 361 ~~Lv~Q~~~~l~~~~----~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH 436 (1931)
++|+.||+++++++. ++++..++|+.....+... + ....++|+|+||++|.+.+.+..+.+.++++||+||||
T Consensus 86 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~--~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 86 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV-L--KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 162 (391)
T ss_dssp HHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH-H--HHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHH
T ss_pred HHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH-H--hcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHH
Confidence 999999999999875 7889999998754322111 1 11357999999999999998888889999999999999
Q ss_pred cccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCcee
Q 000174 437 HAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEV 516 (1931)
Q Consensus 437 ~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~ 516 (1931)
++...+.+...+..+....+ ..+++++|||||... .. ..+...+ ..|...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~--~~~~~i~~SAT~~~~--------~~---~~~~~~~-----------------~~~~~~ 212 (391)
T 1xti_A 163 KMLEQLDMRRDVQEIFRMTP--HEKQVMMFSATLSKE--------IR---PVCRKFM-----------------QDPMEI 212 (391)
T ss_dssp HHTSSHHHHHHHHHHHHTSC--SSSEEEEEESSCCST--------HH---HHHHHHC-----------------SSCEEE
T ss_pred HHhhccchHHHHHHHHhhCC--CCceEEEEEeeCCHH--------HH---HHHHHHc-----------------CCCeEE
Confidence 99886678777777776543 248899999998641 00 0111111 111111
Q ss_pred EEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHH
Q 000174 517 VVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYAL 596 (1931)
Q Consensus 517 ~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l 596 (1931)
.........
T Consensus 213 ~~~~~~~~~----------------------------------------------------------------------- 221 (391)
T 1xti_A 213 FVDDETKLT----------------------------------------------------------------------- 221 (391)
T ss_dssp ECCCCCCCC-----------------------------------------------------------------------
T ss_pred EecCccccC-----------------------------------------------------------------------
Confidence 000000000
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccc
Q 000174 597 GELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGE 676 (1931)
Q Consensus 597 ~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 676 (1931)
...+..
T Consensus 222 ------------------------------------------------------------------------~~~~~~-- 227 (391)
T 1xti_A 222 ------------------------------------------------------------------------LHGLQQ-- 227 (391)
T ss_dssp ------------------------------------------------------------------------CTTCEE--
T ss_pred ------------------------------------------------------------------------cccceE--
Confidence 000000
Q ss_pred ccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEE
Q 000174 677 LLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLI 756 (1931)
Q Consensus 677 l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~ 756 (1931)
.........|...|.+++... ...++||||+++.++..+++.|.. .++.+..+|
T Consensus 228 -------------------~~~~~~~~~~~~~l~~~l~~~---~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~ 281 (391)
T 1xti_A 228 -------------------YYVKLKDNEKNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVE----QNFPAIAIH 281 (391)
T ss_dssp -------------------EEEECCGGGHHHHHHHHHHHS---CCSEEEEECSCHHHHHHHHHHHHH----TTCCEEEEC
T ss_pred -------------------EEEEcCchhHHHHHHHHHHhc---CCCcEEEEeCcHHHHHHHHHHHHh----CCCcEEEEe
Confidence 000001124566666767654 467999999999999999999998 578999999
Q ss_pred ccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEE
Q 000174 757 GHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYIL 830 (1931)
Q Consensus 757 G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~iv 830 (1931)
| +++..+|.+++++|++|+.+|||||+++++|+|+|+|++||+||+|+++..|+||+||+||.|+.+.+
T Consensus 282 ~-----~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~ 350 (391)
T 1xti_A 282 R-----GMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA 350 (391)
T ss_dssp T-----TSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEE
T ss_pred C-----CCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEE
Confidence 9 99999999999999999999999999999999999999999999999999999999999999877433
|
| >3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-40 Score=387.59 Aligned_cols=237 Identities=40% Similarity=0.556 Sum_probs=193.7
Q ss_pred hHHHHHHHcCCCcCCHHHHHHHhcCCCCCCC-CCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHH
Q 000174 1591 DFHALEDALKIKFKDRGLLVEAITHASRPSS-GVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNEN 1669 (1931)
Q Consensus 1591 ~~~~le~~lgy~F~~~~LL~~AlTH~S~~~~-~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~ 1669 (1931)
.+..||++|||+|+|+.||.+||||+||... ...|||||||||||||+++|++|||.+||++++|.||.+|+++|||.+
T Consensus 14 ~l~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~~~~neRLEfLGDaVL~l~v~~~L~~~~p~~~~g~Lt~lrs~lV~~~~ 93 (265)
T 3c4b_A 14 GFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTI 93 (265)
T ss_dssp THHHHHHHHTCCCSSHHHHHHHHBCTTCTTCCSSCCSHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHSSHHH
T ss_pred HHHHHHHHhCCccCCHHHHHHHhcCcCcCCCCCCCchHhHHHHhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhHH
Confidence 4789999999999999999999999999754 346999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCchhhhccCCchhHHHHHHHHHHHHHhhcCC---------CCCCCCCCCCCCCchHHHHHHHHHhHhhcccc
Q 000174 1670 FARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKP---------GFNSFGLGDCKAPKVLGDIVESIAGAIFLDSG 1740 (1931)
Q Consensus 1670 La~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~---------~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg 1740 (1931)
||.+|+++||++||++.++.+...|.+|+......-... .......++...||+++|+|||+|||||+|+|
T Consensus 94 La~~a~~lgl~~~l~~~~~~l~~~i~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~laD~~EAliGAiylD~G 173 (265)
T 3c4b_A 94 FASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSG 173 (265)
T ss_dssp HHHHHHHTTGGGTCBCCCHHHHHHHHHHHHHHHHHHC------------------CCSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcChHHHHHhcChhHHHHHHHHHHHHhhhhhhcchhHHhhhcchhhhhhcccccchHHHHHHHHHhhheeeecC
Confidence 999999999999999999988888888887422111000 00001123467899999999999999999999
Q ss_pred CCceeEEeeeccCCCCCCCCC--CCCCCChHHHHHHHHhhcC-CceeEEeccCCeEEEEEEECCEEEEEeecCCHHHHHH
Q 000174 1741 RDTSVVWQVFQPLLDPMVTPE--TLPMHPVRELQERCQQQAE-GLEYKASRSGNLATVEVYIDGVQVGVAQNPQKKMAQK 1817 (1931)
Q Consensus 1741 ~~~~~v~~~~~~~l~~~i~~~--~~~~~P~~~L~e~~~~~~~-~~~y~~~~~g~~f~v~V~v~g~~~~~g~g~skk~Ak~ 1817 (1931)
++++.+|+|+.++|.|.++.. ..+++|+++|++++++... .+.|+ ...+.|+|+|+|+|+.+++|.|.|||+|++
T Consensus 174 ~~~~~~~~~i~~~~~~~i~~~~~~~~k~~l~el~~~~~~~~~~~~~~~--~~~~~f~v~v~v~~~~~~~G~G~SkK~Aeq 251 (265)
T 3c4b_A 174 MSLEVVWQVYYPMMQPLIEKFSANVPRSPVRELLEMEPETAKFSPAER--TYDGKVRVTVEVVGKGKFKGVGRSYRIAKS 251 (265)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHCTTTEEECCCEE--CTTSCEEEEEEETTTEEEEEEESSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhHhhcCCCCHHHHHHHhccCCceeeeccc--cCCCcEEEEEEEecceEEEEeeCCHHHHHH
Confidence 998899999999988876531 2356677777666654221 12222 224689999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 000174 1818 LAARNALAVLKE 1829 (1931)
Q Consensus 1818 ~AA~~AL~~L~~ 1829 (1931)
.||+.||+.|+.
T Consensus 252 ~AA~~AL~~l~~ 263 (265)
T 3c4b_A 252 AAARRALRSLKA 263 (265)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999999964
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-38 Score=401.08 Aligned_cols=345 Identities=21% Similarity=0.227 Sum_probs=257.4
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhh-------------
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQR------------- 347 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~------------- 347 (1931)
+|.+.+..+...+.+...++..|+|+|.++++.++. +|+|+++|||+|||++|++|+.+.+.....
T Consensus 16 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 95 (417)
T 2i4i_A 16 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRY 95 (417)
T ss_dssp SGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTT
T ss_pred CHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccccccc
Confidence 455554444455888889999999999999999998 899999999999999999998876643210
Q ss_pred --cCCCcEEEEEeCChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccc
Q 000174 348 --QNKKMLAVFLVPKVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSII 422 (1931)
Q Consensus 348 --~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l 422 (1931)
.....++|||+||++|+.||+++++++. ++++..++|+.... ..+.....+++|+|+||++|.+.+..+.+
T Consensus 96 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~ 171 (417)
T 2i4i_A 96 GRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIG----QQIRDLERGCHLLVATPGRLVDMMERGKI 171 (417)
T ss_dssp BSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHH----HHHHHHTTCCSEEEECHHHHHHHHHTTSB
T ss_pred ccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHH----HHHHHhhCCCCEEEEChHHHHHHHHcCCc
Confidence 0112569999999999999999999864 67899999986542 33344456899999999999999998888
Q ss_pred cccceeEEEEeCCCcccCCCcHHHHHHHHHhhc--CCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHH-HHhcCCeEEE
Q 000174 423 KMEAINLLILDECHHAVKKHPYSLVMSEFYHTT--SKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNL-ESKLDSVVCT 499 (1931)
Q Consensus 423 ~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~--~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~L-e~~l~~~i~t 499 (1931)
.+.++++|||||||++... .|...+..+.... +....+++++||||+.. .+..+ ...+..
T Consensus 172 ~~~~~~~iViDEah~~~~~-~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~------------~~~~~~~~~~~~---- 234 (417)
T 2i4i_A 172 GLDFCKYLVLDEADRMLDM-GFEPQIRRIVEQDTMPPKGVRHTMMFSATFPK------------EIQMLARDFLDE---- 234 (417)
T ss_dssp CCTTCCEEEESSHHHHHHT-TCHHHHHHHHTSSSCCCBTTBEEEEEESCCCH------------HHHHHHHHHCSS----
T ss_pred ChhhCcEEEEEChhHhhcc-CcHHHHHHHHHhccCCCcCCcEEEEEEEeCCH------------HHHHHHHHHcCC----
Confidence 8999999999999999875 5777777777642 22235789999999852 11111 111111
Q ss_pred ecchHHHhhhCCCCceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccc
Q 000174 500 IKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTES 579 (1931)
Q Consensus 500 ~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~ 579 (1931)
|....+ ..... .
T Consensus 235 -------------~~~~~~--~~~~~-----------------------------------------------~------ 246 (417)
T 2i4i_A 235 -------------YIFLAV--GRVGS-----------------------------------------------T------ 246 (417)
T ss_dssp -------------CEEEEE--C---------------------------------------------------C------
T ss_pred -------------CEEEEe--CCCCC-----------------------------------------------C------
Confidence 110000 00000 0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccc
Q 000174 580 DGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVD 659 (1931)
Q Consensus 580 ~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~ 659 (1931)
T Consensus 247 -------------------------------------------------------------------------------- 246 (417)
T 2i4i_A 247 -------------------------------------------------------------------------------- 246 (417)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCccccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHH
Q 000174 660 SENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPK 739 (1931)
Q Consensus 660 ~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~ 739 (1931)
...+.. .+.......|...|.+++... ..+.++||||+++..++.+++
T Consensus 247 ---------~~~i~~---------------------~~~~~~~~~~~~~l~~~l~~~--~~~~~~lVf~~~~~~~~~l~~ 294 (417)
T 2i4i_A 247 ---------SENITQ---------------------KVVWVEESDKRSFLLDLLNAT--GKDSLTLVFVETKKGADSLED 294 (417)
T ss_dssp ---------CSSEEE---------------------EEEECCGGGHHHHHHHHHHTC--CTTCEEEEECSSHHHHHHHHH
T ss_pred ---------ccCceE---------------------EEEEeccHhHHHHHHHHHHhc--CCCCeEEEEECCHHHHHHHHH
Confidence 000000 000001123556666766653 356799999999999999999
Q ss_pred HHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhc
Q 000174 740 VFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRG 819 (1931)
Q Consensus 740 ~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~G 819 (1931)
.|.. .++.+..+|| ++++.+|.+++++|++|+.+|||||+++++|||+|++++||+||+|+++.+|+||+|
T Consensus 295 ~L~~----~~~~~~~~h~-----~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~G 365 (417)
T 2i4i_A 295 FLYH----EGYACTSIHG-----DRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIG 365 (417)
T ss_dssp HHHH----TTCCEEEECT-----TSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHT
T ss_pred HHHH----CCCCeeEecC-----CCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcC
Confidence 9998 5789999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCc--EEEEEecCC
Q 000174 820 RARKPGSD--YILMIERGN 836 (1931)
Q Consensus 820 Ra~R~Gs~--~ivlv~~~~ 836 (1931)
||||.|+. .++++...+
T Consensus 366 R~gR~g~~g~~~~~~~~~~ 384 (417)
T 2i4i_A 366 RTGRVGNLGLATSFFNERN 384 (417)
T ss_dssp TBCC--CCEEEEEEECGGG
T ss_pred ccccCCCCceEEEEEcccc
Confidence 99999876 344444433
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-38 Score=399.01 Aligned_cols=334 Identities=20% Similarity=0.242 Sum_probs=255.0
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK 360 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT 360 (1931)
++.+.+..+...+.+...++.+|+++|.++++.+++ +++|++++||+|||++|++++.+.+.. ...+.++|||+||
T Consensus 38 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~---~~~~~~~lil~Pt 114 (410)
T 2j0s_A 38 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI---QVRETQALILAPT 114 (410)
T ss_dssp SGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT---TSCSCCEEEECSS
T ss_pred CHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh---ccCCceEEEEcCc
Confidence 455555444556888889999999999999999998 899999999999999999998876532 2345689999999
Q ss_pred hhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCc
Q 000174 361 VPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHH 437 (1931)
Q Consensus 361 ~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~ 437 (1931)
++|+.||+++++.+. ++.+..++|+..... .+.....+++|+|+||++|.+.+.++.+.+.++++||+||||+
T Consensus 115 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~ 190 (410)
T 2j0s_A 115 RELAVQIQKGLLALGDYMNVQCHACIGGTNVGE----DIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADE 190 (410)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHH----HHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEECCCCHHH----HHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHH
Confidence 999999999999864 678888888865432 2223335789999999999999999888899999999999999
Q ss_pred ccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeE
Q 000174 438 AVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVV 517 (1931)
Q Consensus 438 ~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~ 517 (1931)
+.+. .|...+..++...+ ...++++|||||.. .+..+ +..+...|....
T Consensus 191 ~~~~-~~~~~~~~i~~~~~--~~~~~i~~SAT~~~------------~~~~~----------------~~~~~~~~~~~~ 239 (410)
T 2j0s_A 191 MLNK-GFKEQIYDVYRYLP--PATQVVLISATLPH------------EILEM----------------TNKFMTDPIRIL 239 (410)
T ss_dssp HTST-TTHHHHHHHHTTSC--TTCEEEEEESCCCH------------HHHTT----------------GGGTCSSCEEEC
T ss_pred HHhh-hhHHHHHHHHHhCc--cCceEEEEEcCCCH------------HHHHH----------------HHHHcCCCEEEE
Confidence 9875 56666666666543 24789999999863 11110 011111221110
Q ss_pred EEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHH
Q 000174 518 VEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALG 597 (1931)
Q Consensus 518 ~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~ 597 (1931)
+ .....
T Consensus 240 ~--~~~~~------------------------------------------------------------------------ 245 (410)
T 2j0s_A 240 V--KRDEL------------------------------------------------------------------------ 245 (410)
T ss_dssp C--CGGGC------------------------------------------------------------------------
T ss_pred e--cCccc------------------------------------------------------------------------
Confidence 0 00000
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccc
Q 000174 598 ELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGEL 677 (1931)
Q Consensus 598 ~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l 677 (1931)
....+....
T Consensus 246 ----------------------------------------------------------------------~~~~~~~~~- 254 (410)
T 2j0s_A 246 ----------------------------------------------------------------------TLEGIKQFF- 254 (410)
T ss_dssp ----------------------------------------------------------------------SCTTEEEEE-
T ss_pred ----------------------------------------------------------------------cCCCceEEE-
Confidence 000000000
Q ss_pred cccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEc
Q 000174 678 LDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIG 757 (1931)
Q Consensus 678 ~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G 757 (1931)
........|...|.+++... ...++||||+++..++.+++.|.. .++.+..+||
T Consensus 255 -------------------~~~~~~~~k~~~l~~~~~~~---~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~~h~ 308 (410)
T 2j0s_A 255 -------------------VAVEREEWKFDTLCDLYDTL---TITQAVIFCNTKRKVDWLTEKMRE----ANFTVSSMHG 308 (410)
T ss_dssp -------------------EEESSTTHHHHHHHHHHHHH---TSSEEEEECSSHHHHHHHHHHHHH----TTCCCEEECT
T ss_pred -------------------EEeCcHHhHHHHHHHHHHhc---CCCcEEEEEcCHHHHHHHHHHHHh----CCCceEEeeC
Confidence 00001234666777777664 345999999999999999999998 5789999999
Q ss_pred cCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEE
Q 000174 758 HNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYI 829 (1931)
Q Consensus 758 ~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~i 829 (1931)
++++.+|++++++|++|+.+|||||+++++|||+|++++||+||+|+++..|+||+|||||.|+.+.
T Consensus 309 -----~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~ 375 (410)
T 2j0s_A 309 -----DMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV 375 (410)
T ss_dssp -----TSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEE
T ss_pred -----CCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceE
Confidence 9999999999999999999999999999999999999999999999999999999999999987743
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-38 Score=412.87 Aligned_cols=343 Identities=15% Similarity=0.220 Sum_probs=244.5
Q ss_pred chhhhhcCCCCCCcHHHHHHHHHHh--c-cCEEEEeCCCchHHHHHHHHHHHHHHHhhh-cCCCcEEEEEeCChhHHHHH
Q 000174 292 KSEAKEKMPEEQARPYQLDVLEQAK--K-KNTIAFLETGAGKTLIAVLLIRSICNDLQR-QNKKMLAVFLVPKVPLVYQQ 367 (1931)
Q Consensus 292 ~~~~l~~~~~~~~~~~Q~eai~~~l--~-~n~Il~~~TGsGKTliall~i~~~l~~~~~-~~~~~~vL~LvPT~~Lv~Q~ 367 (1931)
..+.+.+.++..|||+|.++++.++ . +|+|++++||+|||++|++|+.+.+..... .....++|||+||++|+.||
T Consensus 83 l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~ 162 (563)
T 3i5x_A 83 IHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQI 162 (563)
T ss_dssp HHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHH
Confidence 3478888999999999999999998 4 799999999999999999999887765321 12245799999999999999
Q ss_pred HHHHHHHc-------CCcEEEEeCCCcccccchHHHHhh-cCCccEEEEcHHHHHHHHhcc-cccccceeEEEEeCCCcc
Q 000174 368 AEVIREQT-------GYVVGHYCGEMGQDFWDAQRWQRE-FDTKQVLVMTAQILLNILRHS-IIKMEAINLLILDECHHA 438 (1931)
Q Consensus 368 ~~~l~~~~-------~l~v~~~~G~~~~~~~~~~~w~~~-~~~~~IlV~Tpq~L~d~L~~~-~l~l~~i~lLV~DEaH~~ 438 (1931)
+++++.++ ...+..++|+... ...|... ..+++|+|+||++|.+++.+. ...+..+++|||||||++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 238 (563)
T 3i5x_A 163 EAEVKKIHDMNYGLKKYACVSLVGGTDF----RAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 238 (563)
T ss_dssp HHHHHHHHHHCGGGTTSCEEEECTTSCH----HHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHhhccccCceeEEEEECCcCH----HHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHH
Confidence 99999853 3557777777543 2333333 347899999999999998774 346788999999999999
Q ss_pred cCCCcHHHHHHHHHhhcCC-----CCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCC
Q 000174 439 VKKHPYSLVMSEFYHTTSK-----EKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMP 513 (1931)
Q Consensus 439 ~~~~~~~~im~~~~~~~~~-----~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p 513 (1931)
... .|...+..+....+. ...+++++||||+.. .+..+.. .+...|
T Consensus 239 ~~~-~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~------------~v~~~~~----------------~~~~~~ 289 (563)
T 3i5x_A 239 LEI-GFRDDLETISGILNEKNSKSADNIKTLLFSATLDD------------KVQKLAN----------------NIMNKK 289 (563)
T ss_dssp TST-TTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT------------HHHHHTT----------------TTCCSS
T ss_pred hcc-chHHHHHHHHHhhhhccccCccCceEEEEEccCCH------------HHHHHHH----------------HhcCCC
Confidence 874 577666665544321 224789999999864 2222211 111122
Q ss_pred ceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHH
Q 000174 514 SEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAIN 593 (1931)
Q Consensus 514 ~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~ 593 (1931)
....+......... .
T Consensus 290 ~~~~~~~~~~~~~~---------------------------------------------~-------------------- 304 (563)
T 3i5x_A 290 ECLFLDTVDKNEPE---------------------------------------------A-------------------- 304 (563)
T ss_dssp EEEEEESSCSSSCS---------------------------------------------S--------------------
T ss_pred ceEEEeccCCCCcc---------------------------------------------c--------------------
Confidence 21111100000000 0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccc
Q 000174 594 YALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIE 673 (1931)
Q Consensus 594 ~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 673 (1931)
...+.
T Consensus 305 ---------------------------------------------------------------------------~~~~~ 309 (563)
T 3i5x_A 305 ---------------------------------------------------------------------------HERID 309 (563)
T ss_dssp ---------------------------------------------------------------------------CTTEE
T ss_pred ---------------------------------------------------------------------------cccCc
Confidence 00000
Q ss_pred cccccccccccCCCchhhhhhhcccCCCCCHHH----HHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCC
Q 000174 674 EGELLDSHVVSGGEHVDVIIGAAVADGKVTPKV----QSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSF 749 (1931)
Q Consensus 674 ~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv----~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~ 749 (1931)
.... .......+. ..+.+.+.. ...+.++||||+++..++.+++.|..... .+
T Consensus 310 ~~~~--------------------~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~ 366 (563)
T 3i5x_A 310 QSVV--------------------ISEKFANSIFAAVEHIKKQIKE--RDSNYKAIIFAPTVKFTSFLCSILKNEFK-KD 366 (563)
T ss_dssp EEEE--------------------EESSTTHHHHHHHHHHHHHHHH--TTTCCEEEEECSCHHHHHHHHHHHHHHHT-TT
T ss_pred eEEE--------------------ECchhHhhHHHHHHHHHHHHhh--cCCCCcEEEEcCcHHHHHHHHHHHHHhcc-CC
Confidence 0000 000001111 122222222 24567999999999999999999986311 37
Q ss_pred ceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--
Q 000174 750 VKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD-- 827 (1931)
Q Consensus 750 ~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~-- 827 (1931)
+.+..+|| +|++.+|.+++++|++|+++|||||+++++|||+|+|++||+||+|+++.+|+||+|||||.|..
T Consensus 367 ~~v~~~h~-----~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~ 441 (563)
T 3i5x_A 367 LPILEFHG-----KITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGS 441 (563)
T ss_dssp SCEEEEST-----TSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEE
T ss_pred ceEEEecC-----CCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCce
Confidence 88999999 99999999999999999999999999999999999999999999999999999999999999976
Q ss_pred EEEEEecC
Q 000174 828 YILMIERG 835 (1931)
Q Consensus 828 ~ivlv~~~ 835 (1931)
+++++...
T Consensus 442 ~i~~~~~~ 449 (563)
T 3i5x_A 442 SVLFICKD 449 (563)
T ss_dssp EEEEEEGG
T ss_pred EEEEEchh
Confidence 45555543
|
| >3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-40 Score=382.62 Aligned_cols=212 Identities=33% Similarity=0.448 Sum_probs=128.5
Q ss_pred hHHHHHHHcCCCcCCHHHHHHHhcCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHHH
Q 000174 1591 DFHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENF 1670 (1931)
Q Consensus 1591 ~~~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~L 1670 (1931)
++..||++|||+|+|+.||.+||||+||... .+||||||||||||+++|++|||.+||++++|.||.+|+.+|||++|
T Consensus 27 ~l~~le~~lgy~F~~~~LL~~AlTH~S~~~~--~~neRLefLGDavL~~~v~~~L~~~~p~~~eg~Ls~~r~~lVs~~~L 104 (248)
T 3n3w_A 27 NIEKLEQSLTYEFKDKNLLIHALTHKSFKKS--YNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSF 104 (248)
T ss_dssp THHHHHHHHTCCCSSHHHHHHHTBCTTSBTT--BCSHHHHHHHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHhcCcCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCHHHH
Confidence 4899999999999999999999999999754 79999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCchhhhccCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCceeEEeee
Q 000174 1671 ARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVF 1750 (1931)
Q Consensus 1671 a~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~~~v~~~~ 1750 (1931)
|.+|.++||++||+.++++.. .++...+|+++|+|||+|||||+|+|++ .+++|+
T Consensus 105 a~~a~~lgL~~~l~~~~~e~~-----------------------~~g~~~~~~lad~fEAliGAiyld~G~~--~~~~~i 159 (248)
T 3n3w_A 105 AKIANSLNLGDFILMSVAEEN-----------------------NGGKEKPSILSDALEAIIGAIHLEAGFE--FAKTIA 159 (248)
T ss_dssp HHHHHHTTGGGTCBCCHHHHH-----------------------TTGGGCHHHHHHHHHHHHHHHHHHHCHH--HHHHHH
T ss_pred HHHHHHcCcHHHhhcCchhhh-----------------------cCCCCCccHHHHHHHHHHHHHHHHCChH--HHHHHH
Confidence 999999999999998776532 1234678999999999999999999865 677888
Q ss_pred ccCCCCCCCCC---CCCCCChHHHHHHHHhhcCC-ceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHH
Q 000174 1751 QPLLDPMVTPE---TLPMHPVRELQERCQQQAEG-LEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAAR 1821 (1931)
Q Consensus 1751 ~~~l~~~i~~~---~~~~~P~~~L~e~~~~~~~~-~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~ 1821 (1931)
..++.+.+... ...+|||+.|||+||+++.. +.|++.. .| +.|+|.|+|+|+.+++|.|.|||+||+.||+
T Consensus 160 ~~~~~~~l~~~~~~~~~~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~ 239 (248)
T 3n3w_A 160 LRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAK 239 (248)
T ss_dssp HHHHHHHCC-----------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhccccccCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHH
Confidence 88888776542 34689999999999998876 4998753 44 4799999999999999999999999999999
Q ss_pred HHHHHHHh
Q 000174 1822 NALAVLKE 1829 (1931)
Q Consensus 1822 ~AL~~L~~ 1829 (1931)
.||+.|+.
T Consensus 240 ~AL~~L~~ 247 (248)
T 3n3w_A 240 IALEKLGA 247 (248)
T ss_dssp --------
T ss_pred HHHHHHHc
Confidence 99999864
|
| >2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-39 Score=368.09 Aligned_cols=206 Identities=29% Similarity=0.417 Sum_probs=185.4
Q ss_pred hHHHHHHHcCCCcCCHHHHHHHhcCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHHH
Q 000174 1591 DFHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENF 1670 (1931)
Q Consensus 1591 ~~~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~L 1670 (1931)
.+..||++|||+|+|+.||.+||||+||... .+||||||||||||+++|++|||.+||++++|.||.+|+++|||.+|
T Consensus 3 ~~~~l~~~lg~~f~~~~ll~~AlTh~S~~~~--~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~~~l 80 (221)
T 2nug_A 3 MLEQLEKKLGYTFKDKSLLEKALTHVSYSKK--EHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFF 80 (221)
T ss_dssp CHHHHHHHHTCCCSSHHHHHHHHBCTTTCSS--SCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHhCCCcCCHHHHHHHhCCCCCCCC--CCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCHHHH
Confidence 3678999999999999999999999999654 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCchhhhccCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCceeEEeee
Q 000174 1671 ARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVF 1750 (1931)
Q Consensus 1671 a~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~~~v~~~~ 1750 (1931)
|.+|.++||++||+.+.++. .+++++|+|||+|||||+|+|++.+.+++|+
T Consensus 81 a~~a~~l~l~~~l~~~~~~~-----------------------------~~~~lad~~EAliGAiyld~g~~~~~~~~~i 131 (221)
T 2nug_A 81 NLLAQKLELHKFIRIKRGKI-----------------------------NETIIGDVFEALWAAVYIDSGRDANFTRELF 131 (221)
T ss_dssp HHHHHTTTGGGTCBSCTTCC-----------------------------CHHHHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHcChHHhhccCCCcc-----------------------------cchHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999876642 1899999999999999999998875578888
Q ss_pred ccCCCCCCC-C---CCCCCCChHHHHHHHHhhcCC-ceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHH
Q 000174 1751 QPLLDPMVT-P---ETLPMHPVRELQERCQQQAEG-LEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAA 1820 (1931)
Q Consensus 1751 ~~~l~~~i~-~---~~~~~~P~~~L~e~~~~~~~~-~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA 1820 (1931)
.+++.+.+. . ....+||++.|||+||+++.. ++|++.. .| +.|+|.|+|+|+ +++|.|.|||+||+.||
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~G~G~skK~Ae~~AA 210 (221)
T 2nug_A 132 YKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGEGKSKKEAEQRAA 210 (221)
T ss_dssp HHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhhhhhccccccCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EEEEecCCHHHHHHHHH
Confidence 888877665 2 233689999999999999876 5998753 34 479999999999 99999999999999999
Q ss_pred HHHHHHHH
Q 000174 1821 RNALAVLK 1828 (1931)
Q Consensus 1821 ~~AL~~L~ 1828 (1931)
+.||+.|.
T Consensus 211 ~~AL~~L~ 218 (221)
T 2nug_A 211 EELIKLLE 218 (221)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhh
Confidence 99999986
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-37 Score=389.44 Aligned_cols=334 Identities=20% Similarity=0.242 Sum_probs=250.9
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc---cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK---KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV 358 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~---~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv 358 (1931)
+|.+.+..+...+.+.+.++..|+|+|.++++.++. +++|+++|||+|||++|++++...+.. .+.+.++|||+
T Consensus 6 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~---~~~~~~~lil~ 82 (395)
T 3pey_A 6 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP---EDASPQAICLA 82 (395)
T ss_dssp SSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT---TCCSCCEEEEC
T ss_pred CHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc---CCCCccEEEEC
Confidence 445555555566889999999999999999999987 789999999999999999998766542 23456899999
Q ss_pred CChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCC
Q 000174 359 PKVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDEC 435 (1931)
Q Consensus 359 PT~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEa 435 (1931)
||++|+.||+++++++. ++.+..++|+..... ....++|+|+||++|.+.+.++.+.+.++++||+|||
T Consensus 83 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEa 154 (395)
T 3pey_A 83 PSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN--------KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEA 154 (395)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT--------SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETH
T ss_pred CCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh--------ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEECh
Confidence 99999999999999864 567777776643211 1247899999999999999988888999999999999
Q ss_pred CcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCce
Q 000174 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSE 515 (1931)
Q Consensus 436 H~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e 515 (1931)
|++.....+...+..+....+. .+++++|||||.. .+..+... ....+..
T Consensus 155 h~~~~~~~~~~~~~~~~~~~~~--~~~~i~~SAT~~~------------~~~~~~~~----------------~~~~~~~ 204 (395)
T 3pey_A 155 DNMLDQQGLGDQCIRVKRFLPK--DTQLVLFSATFAD------------AVRQYAKK----------------IVPNANT 204 (395)
T ss_dssp HHHHHSTTHHHHHHHHHHTSCT--TCEEEEEESCCCH------------HHHHHHHH----------------HSCSCEE
T ss_pred hhhcCccccHHHHHHHHHhCCC--CcEEEEEEecCCH------------HHHHHHHH----------------hCCCCeE
Confidence 9999866888887777665433 4899999999863 11111111 1111100
Q ss_pred eEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHH
Q 000174 516 VVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYA 595 (1931)
Q Consensus 516 ~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~ 595 (1931)
... .....
T Consensus 205 ~~~--~~~~~---------------------------------------------------------------------- 212 (395)
T 3pey_A 205 LEL--QTNEV---------------------------------------------------------------------- 212 (395)
T ss_dssp ECC--CGGGC----------------------------------------------------------------------
T ss_pred EEc--ccccc----------------------------------------------------------------------
Confidence 000 00000
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccc
Q 000174 596 LGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEG 675 (1931)
Q Consensus 596 l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 675 (1931)
....+...
T Consensus 213 ------------------------------------------------------------------------~~~~~~~~ 220 (395)
T 3pey_A 213 ------------------------------------------------------------------------NVDAIKQL 220 (395)
T ss_dssp ------------------------------------------------------------------------SCTTEEEE
T ss_pred ------------------------------------------------------------------------ccccccEE
Confidence 00000000
Q ss_pred cccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEE
Q 000174 676 ELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASL 755 (1931)
Q Consensus 676 ~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l 755 (1931)
.........|...+.+++.. ....++||||+++.++..+++.|+. .++.+..+
T Consensus 221 --------------------~~~~~~~~~~~~~l~~~~~~---~~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~ 273 (395)
T 3pey_A 221 --------------------YMDCKNEADKFDVLTELYGL---MTIGSSIIFVATKKTANVLYGKLKS----EGHEVSIL 273 (395)
T ss_dssp --------------------EEECSSHHHHHHHHHHHHTT---TTSSEEEEECSCHHHHHHHHHHHHH----TTCCCEEE
T ss_pred --------------------EEEcCchHHHHHHHHHHHHh---ccCCCEEEEeCCHHHHHHHHHHHHh----cCCcEEEe
Confidence 00000112244444444432 2457999999999999999999998 57899999
Q ss_pred EccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCC------CHHHHHHhhccCCCCCCcEE
Q 000174 756 IGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAK------TVLAYIQSRGRARKPGSDYI 829 (1931)
Q Consensus 756 ~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~------s~~~yiQr~GRa~R~Gs~~i 829 (1931)
|| +++..+|.+++++|++|+.+|||||+++++|||+|+|++||+||+|+ ++.+|+||+|||||.|+.+.
T Consensus 274 ~~-----~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~ 348 (395)
T 3pey_A 274 HG-----DLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGV 348 (395)
T ss_dssp CT-----TSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEE
T ss_pred CC-----CCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCce
Confidence 99 99999999999999999999999999999999999999999999999 99999999999999998744
Q ss_pred EEE
Q 000174 830 LMI 832 (1931)
Q Consensus 830 vlv 832 (1931)
.++
T Consensus 349 ~~~ 351 (395)
T 3pey_A 349 AIS 351 (395)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=392.22 Aligned_cols=331 Identities=21% Similarity=0.238 Sum_probs=255.1
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP 359 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP 359 (1931)
.+|++.+..+...+.+.+.++..|+++|.++++.+++ +++|+++|||+|||++|++++...+.. ...+.++|||+|
T Consensus 21 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~---~~~~~~~lil~P 97 (400)
T 1s2m_A 21 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP---KLNKIQALIMVP 97 (400)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT---TSCSCCEEEECS
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhh---ccCCccEEEEcC
Confidence 4456665555566889999999999999999999998 899999999999999999998776542 224567999999
Q ss_pred ChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCC
Q 000174 360 KVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECH 436 (1931)
Q Consensus 360 T~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH 436 (1931)
|++|+.||.++++.+. ++++..++|+... ...+......++|+|+||++|.+.+.+....+.++++|||||||
T Consensus 98 ~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH 173 (400)
T 1s2m_A 98 TRELALQTSQVVRTLGKHCGISCMVTTGGTNL----RDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEAD 173 (400)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECSSSCH----HHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHH
T ss_pred CHHHHHHHHHHHHHHhcccCceEEEEeCCcch----HHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCch
Confidence 9999999999999875 6788888887653 22333444688999999999999998888889999999999999
Q ss_pred cccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHH-HHHhcCCeEEEecchHHHhhhCCCCce
Q 000174 437 HAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICN-LESKLDSVVCTIKDRKELEKHVPMPSE 515 (1931)
Q Consensus 437 ~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~-Le~~l~~~i~t~~~~~~l~~~~~~p~e 515 (1931)
++... .|...+..+....+. ..++++||||+.. .+.. +...+ ..|..
T Consensus 174 ~~~~~-~~~~~~~~i~~~~~~--~~~~i~lSAT~~~------------~~~~~~~~~~-----------------~~~~~ 221 (400)
T 1s2m_A 174 KMLSR-DFKTIIEQILSFLPP--THQSLLFSATFPL------------TVKEFMVKHL-----------------HKPYE 221 (400)
T ss_dssp HHSSH-HHHHHHHHHHTTSCS--SCEEEEEESCCCH------------HHHHHHHHHC-----------------SSCEE
T ss_pred Hhhhh-chHHHHHHHHHhCCc--CceEEEEEecCCH------------HHHHHHHHHc-----------------CCCeE
Confidence 99874 788888877765432 4789999999752 1111 11111 11110
Q ss_pred eEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHH
Q 000174 516 VVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYA 595 (1931)
Q Consensus 516 ~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~ 595 (1931)
... .....
T Consensus 222 ~~~--~~~~~---------------------------------------------------------------------- 229 (400)
T 1s2m_A 222 INL--MEELT---------------------------------------------------------------------- 229 (400)
T ss_dssp ESC--CSSCB----------------------------------------------------------------------
T ss_pred EEe--ccccc----------------------------------------------------------------------
Confidence 000 00000
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccc
Q 000174 596 LGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEG 675 (1931)
Q Consensus 596 l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 675 (1931)
...+..
T Consensus 230 -------------------------------------------------------------------------~~~~~~- 235 (400)
T 1s2m_A 230 -------------------------------------------------------------------------LKGITQ- 235 (400)
T ss_dssp -------------------------------------------------------------------------CTTEEE-
T ss_pred -------------------------------------------------------------------------cCCcee-
Confidence 000000
Q ss_pred cccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEE
Q 000174 676 ELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASL 755 (1931)
Q Consensus 676 ~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l 755 (1931)
.........|...+.+++... ...++||||+++..+..+++.|.. .++.+..+
T Consensus 236 --------------------~~~~~~~~~k~~~l~~~~~~~---~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~~ 288 (400)
T 1s2m_A 236 --------------------YYAFVEERQKLHCLNTLFSKL---QINQAIIFCNSTNRVELLAKKITD----LGYSCYYS 288 (400)
T ss_dssp --------------------EEEECCGGGHHHHHHHHHHHS---CCSEEEEECSSHHHHHHHHHHHHH----HTCCEEEE
T ss_pred --------------------EEEEechhhHHHHHHHHHhhc---CCCcEEEEEecHHHHHHHHHHHHh----cCCCeEEe
Confidence 000001124555666666553 456999999999999999999988 57889999
Q ss_pred EccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE
Q 000174 756 IGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY 828 (1931)
Q Consensus 756 ~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ 828 (1931)
|| +++..+|.+++++|++|+.+|||||+++++|||+|++++||+||+|+++.+|+||+|||||.|+.+
T Consensus 289 ~~-----~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g 356 (400)
T 1s2m_A 289 HA-----RMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLG 356 (400)
T ss_dssp CT-----TSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCE
T ss_pred cC-----CCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCc
Confidence 99 999999999999999999999999999999999999999999999999999999999999999773
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-37 Score=386.82 Aligned_cols=335 Identities=21% Similarity=0.220 Sum_probs=250.6
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc---cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEE
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK---KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFL 357 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~---~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~L 357 (1931)
.++.+.+..+...+.+.+.++..|+++|.++++.++. +++|+++|||+|||++|++++.+.+.. ...+.++|||
T Consensus 25 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~---~~~~~~~lil 101 (412)
T 3fht_A 25 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP---ANKYPQCLCL 101 (412)
T ss_dssp SCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT---TSCSCCEEEE
T ss_pred CCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh---cCCCCCEEEE
Confidence 3455555555566889999999999999999999987 789999999999999999998766542 2345579999
Q ss_pred eCChhHHHHHHHHHHHHc----CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhc-ccccccceeEEEE
Q 000174 358 VPKVPLVYQQAEVIREQT----GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH-SIIKMEAINLLIL 432 (1931)
Q Consensus 358 vPT~~Lv~Q~~~~l~~~~----~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~-~~l~l~~i~lLV~ 432 (1931)
+||++|+.||++.++++. ++.+....|+...... .....+|+|+||++|.+.+.+ +.+.+.++++|||
T Consensus 102 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iVi 174 (412)
T 3fht_A 102 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 174 (412)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh-------hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEE
Confidence 999999999999999864 5677777776543221 124679999999999999865 6778899999999
Q ss_pred eCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCC
Q 000174 433 DECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPM 512 (1931)
Q Consensus 433 DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~ 512 (1931)
||||++.....+...+..+....+ ..+++++|||||.. .+..+.. .....
T Consensus 175 DEah~~~~~~~~~~~~~~~~~~~~--~~~~~i~~SAT~~~------------~~~~~~~----------------~~~~~ 224 (412)
T 3fht_A 175 DEADVMIATQGHQDQSIRIQRMLP--RNCQMLLFSATFED------------SVWKFAQ----------------KVVPD 224 (412)
T ss_dssp ETHHHHHSTTTTHHHHHHHHHTSC--TTCEEEEEESCCCH------------HHHHHHH----------------HHSSS
T ss_pred eCHHHHhhcCCcHHHHHHHHhhCC--CCceEEEEEeecCH------------HHHHHHH----------------HhcCC
Confidence 999999876677777776666543 34899999999863 1111111 11111
Q ss_pred CceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHH
Q 000174 513 PSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAI 592 (1931)
Q Consensus 513 p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~ 592 (1931)
|..... .....
T Consensus 225 ~~~~~~--~~~~~------------------------------------------------------------------- 235 (412)
T 3fht_A 225 PNVIKL--KREEE------------------------------------------------------------------- 235 (412)
T ss_dssp CEEECC--CGGGS-------------------------------------------------------------------
T ss_pred CeEEee--ccccc-------------------------------------------------------------------
Confidence 110000 00000
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccc
Q 000174 593 NYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEI 672 (1931)
Q Consensus 593 ~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 672 (1931)
....+
T Consensus 236 ---------------------------------------------------------------------------~~~~~ 240 (412)
T 3fht_A 236 ---------------------------------------------------------------------------TLDTI 240 (412)
T ss_dssp ---------------------------------------------------------------------------SCTTE
T ss_pred ---------------------------------------------------------------------------cccCc
Confidence 00000
Q ss_pred ccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCcee
Q 000174 673 EEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKS 752 (1931)
Q Consensus 673 ~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~ 752 (1931)
... .........|...|.+++... ...++||||+++..+..+++.|.. .++.+
T Consensus 241 ~~~--------------------~~~~~~~~~~~~~l~~~~~~~---~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~ 293 (412)
T 3fht_A 241 KQY--------------------YVLCSSRDEKFQALCNLYGAI---TIAQAMIFCHTRKTASWLAAELSK----EGHQV 293 (412)
T ss_dssp EEE--------------------EEECSSHHHHHHHHHHHHHHH---SSSEEEEECSSHHHHHHHHHHHHH----TTCCC
T ss_pred eEE--------------------EEEcCChHHHHHHHHHHHhhc---CCCCEEEEeCCHHHHHHHHHHHHh----CCCeE
Confidence 000 000001123556666666554 356999999999999999999998 57899
Q ss_pred EEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCC------CHHHHHHhhccCCCCCC
Q 000174 753 ASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAK------TVLAYIQSRGRARKPGS 826 (1931)
Q Consensus 753 ~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~------s~~~yiQr~GRa~R~Gs 826 (1931)
..+|| +|++.+|.+++++|++|+.+|||||+++++|||+|+|++||+||+|+ +..+|+||+|||||.|+
T Consensus 294 ~~~~~-----~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~ 368 (412)
T 3fht_A 294 ALLSG-----EMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGK 368 (412)
T ss_dssp EEECT-----TSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTC
T ss_pred EEecC-----CCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCC
Confidence 99999 99999999999999999999999999999999999999999999995 67999999999999998
Q ss_pred cEEEE
Q 000174 827 DYILM 831 (1931)
Q Consensus 827 ~~ivl 831 (1931)
.+..+
T Consensus 369 ~g~~~ 373 (412)
T 3fht_A 369 RGLAV 373 (412)
T ss_dssp CEEEE
T ss_pred CceEE
Confidence 74433
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-37 Score=392.31 Aligned_cols=339 Identities=18% Similarity=0.238 Sum_probs=242.0
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK 360 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT 360 (1931)
++...+..+...+.+.+.++..|++||.++++.+++ +++|++++||+|||++|++++.+.+.. ...+.++|||+||
T Consensus 41 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~---~~~~~~~lil~P~ 117 (414)
T 3eiq_A 41 SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL---DLKATQALVLAPT 117 (414)
T ss_dssp CGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT---TSCSCCEEEECSS
T ss_pred CHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhh---cCCceeEEEEeCh
Confidence 344444444455788889999999999999999998 899999999999999999998876542 2345679999999
Q ss_pred hhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhh-cCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCC
Q 000174 361 VPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQRE-FDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECH 436 (1931)
Q Consensus 361 ~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~-~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH 436 (1931)
++|+.||+++++.+. +..+..+.|+... ...+... ...++|+|+||++|.+.+.++.+.+..+++|||||||
T Consensus 118 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah 193 (414)
T 3eiq_A 118 RELAQQIQKVVMALGDYMGASCHACIGGTNV----RAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEAD 193 (414)
T ss_dssp HHHHHHHHHHHHHHGGGSCCCEEECCCCTTH----HHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHH
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEECCcch----HHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHH
Confidence 999999999999875 6777777777543 2223333 3678999999999999999988889999999999999
Q ss_pred cccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCcee
Q 000174 437 HAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEV 516 (1931)
Q Consensus 437 ~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~ 516 (1931)
++.+. .|...+..++...+ ..+++++|||||.. .+..+.. .+...|...
T Consensus 194 ~~~~~-~~~~~~~~~~~~~~--~~~~~i~~SAT~~~------------~~~~~~~----------------~~~~~~~~~ 242 (414)
T 3eiq_A 194 EMLSR-GFKDQIYDIFQKLN--SNTQVVLLSATMPS------------DVLEVTK----------------KFMRDPIRI 242 (414)
T ss_dssp HHHHT-TTHHHHHHHHTTSC--TTCEEEEECSCCCH------------HHHHHHT----------------TTCSSCEEE
T ss_pred Hhhcc-CcHHHHHHHHHhCC--CCCeEEEEEEecCH------------HHHHHHH----------------HHcCCCEEE
Confidence 99874 56666666665543 34899999999852 1111111 111111110
Q ss_pred EEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHH
Q 000174 517 VVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYAL 596 (1931)
Q Consensus 517 ~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l 596 (1931)
........
T Consensus 243 ~~~~~~~~------------------------------------------------------------------------ 250 (414)
T 3eiq_A 243 LVKKEELT------------------------------------------------------------------------ 250 (414)
T ss_dssp CCCCCCCC------------------------------------------------------------------------
T ss_pred EecCCccC------------------------------------------------------------------------
Confidence 00000000
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccc
Q 000174 597 GELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGE 676 (1931)
Q Consensus 597 ~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 676 (1931)
...+...
T Consensus 251 ------------------------------------------------------------------------~~~~~~~- 257 (414)
T 3eiq_A 251 ------------------------------------------------------------------------LEGIRQF- 257 (414)
T ss_dssp ------------------------------------------------------------------------TTSCCEE-
T ss_pred ------------------------------------------------------------------------CCCceEE-
Confidence 0000000
Q ss_pred ccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEE
Q 000174 677 LLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLI 756 (1931)
Q Consensus 677 l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~ 756 (1931)
.........|...|.+++... ...++||||+++..++.+++.|.. .++.+..+|
T Consensus 258 -------------------~~~~~~~~~~~~~l~~~~~~~---~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~h 311 (414)
T 3eiq_A 258 -------------------YINVEREEWKLDTLCDLYETL---TITQAVIFINTRRKVDWLTEKMHA----RDFTVSAMH 311 (414)
T ss_dssp -------------------EEECSSSTTHHHHHHHHHHSS---CCSSCEEECSCHHHHHHHHHHHHT----TTCCCEEC-
T ss_pred -------------------EEEeChHHhHHHHHHHHHHhC---CCCcEEEEeCCHHHHHHHHHHHHh----cCCeEEEec
Confidence 000011223666677776553 456899999999999999999998 578999999
Q ss_pred ccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--EEEEEec
Q 000174 757 GHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--YILMIER 834 (1931)
Q Consensus 757 G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivlv~~ 834 (1931)
| ++++.+|.+++++|++|+.+|||||+++++|||+|++++||+||+|+++.+|+||+|||||.|+. +++++..
T Consensus 312 ~-----~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~ 386 (414)
T 3eiq_A 312 G-----DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTE 386 (414)
T ss_dssp -------CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECS
T ss_pred C-----CCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcH
Confidence 9 99999999999999999999999999999999999999999999999999999999999999866 4444443
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=378.29 Aligned_cols=332 Identities=18% Similarity=0.295 Sum_probs=252.3
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV 358 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv 358 (1931)
.++.+.+..+...+.+.+.++.+|+|+|.++++.+++ +++++.+|||+|||++|++++...+. ...+.++|||+
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~----~~~~~~~lil~ 81 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVN----ENNGIEAIILT 81 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSC----SSSSCCEEEEC
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhc----ccCCCcEEEEc
Confidence 3455555545556888999999999999999999987 58999999999999999999877654 23456799999
Q ss_pred CChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCC
Q 000174 359 PKVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDEC 435 (1931)
Q Consensus 359 PT~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEa 435 (1931)
|+++|+.||+++++.++ ++.+..++|+.... ..+ ..+..++|+|+||+.|.+.+.++.+.+.++++||+|||
T Consensus 82 P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~-~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEa 156 (367)
T 1hv8_A 82 PTRELAIQVADEIESLKGNKNLKIAKIYGGKAIY----PQI-KALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEA 156 (367)
T ss_dssp SCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHH----HHH-HHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETH
T ss_pred CCHHHHHHHHHHHHHHhCCCCceEEEEECCcchH----HHH-hhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCc
Confidence 99999999999999976 56788888876432 122 22347899999999999999988888999999999999
Q ss_pred CcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHH-HHHHhcCCeEEEecchHHHhhhCCCCc
Q 000174 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKIC-NLESKLDSVVCTIKDRKELEKHVPMPS 514 (1931)
Q Consensus 436 H~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~-~Le~~l~~~i~t~~~~~~l~~~~~~p~ 514 (1931)
|++.+. .|...+..+..... ..+++++|||||.. .+. .+...+......... ....
T Consensus 157 h~~~~~-~~~~~~~~~~~~~~--~~~~~i~~SAT~~~------------~~~~~~~~~~~~~~~~~~~-------~~~~- 213 (367)
T 1hv8_A 157 DEMLNM-GFIKDVEKILNACN--KDKRILLFSATMPR------------EILNLAKKYMGDYSFIKAK-------INAN- 213 (367)
T ss_dssp HHHHTT-TTHHHHHHHHHTSC--SSCEEEEECSSCCH------------HHHHHHHHHCCSEEEEECC-------SSSS-
T ss_pred hHhhhh-chHHHHHHHHHhCC--CCceEEEEeeccCH------------HHHHHHHHHcCCCeEEEec-------CCCC-
Confidence 999875 56666666655432 34789999999863 111 111111110000000 0000
Q ss_pred eeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHH
Q 000174 515 EVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINY 594 (1931)
Q Consensus 515 e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~ 594 (1931)
T Consensus 214 -------------------------------------------------------------------------------- 213 (367)
T 1hv8_A 214 -------------------------------------------------------------------------------- 213 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccc
Q 000174 595 ALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEE 674 (1931)
Q Consensus 595 ~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 674 (1931)
+..
T Consensus 214 -----------------------------------------------------------------------------~~~ 216 (367)
T 1hv8_A 214 -----------------------------------------------------------------------------IEQ 216 (367)
T ss_dssp -----------------------------------------------------------------------------SEE
T ss_pred -----------------------------------------------------------------------------ceE
Confidence 000
Q ss_pred ccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEE
Q 000174 675 GELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSAS 754 (1931)
Q Consensus 675 ~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~ 754 (1931)
.........|+..|.+++. ....++||||+++..+..+++.|.. .++.+..
T Consensus 217 ---------------------~~~~~~~~~~~~~l~~~l~----~~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~ 267 (367)
T 1hv8_A 217 ---------------------SYVEVNENERFEALCRLLK----NKEFYGLVFCKTKRDTKELASMLRD----IGFKAGA 267 (367)
T ss_dssp ---------------------EEEECCGGGHHHHHHHHHC----STTCCEEEECSSHHHHHHHHHHHHH----TTCCEEE
T ss_pred ---------------------EEEEeChHHHHHHHHHHHh----cCCCcEEEEECCHHHHHHHHHHHHh----cCCCeEE
Confidence 0000011235555655553 3567899999999999999999998 5789999
Q ss_pred EEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--EEEEE
Q 000174 755 LIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--YILMI 832 (1931)
Q Consensus 755 l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivlv 832 (1931)
+|| +++..+|++++++|++|+.+|||||+++++|+|+|++++||+||+|+++.+|+||+|||+|.|+. .++++
T Consensus 268 ~~~-----~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~ 342 (367)
T 1hv8_A 268 IHG-----DLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISII 342 (367)
T ss_dssp ECS-----SSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEE
T ss_pred eeC-----CCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEE
Confidence 999 99999999999999999999999999999999999999999999999999999999999999865 44455
Q ss_pred ecC
Q 000174 833 ERG 835 (1931)
Q Consensus 833 ~~~ 835 (1931)
.+.
T Consensus 343 ~~~ 345 (367)
T 1hv8_A 343 NRR 345 (367)
T ss_dssp CTT
T ss_pred cHH
Confidence 443
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-37 Score=405.17 Aligned_cols=342 Identities=16% Similarity=0.226 Sum_probs=244.5
Q ss_pred chhhhhcCCCCCCcHHHHHHHHHHh--c-cCEEEEeCCCchHHHHHHHHHHHHHHHhhh-cCCCcEEEEEeCChhHHHHH
Q 000174 292 KSEAKEKMPEEQARPYQLDVLEQAK--K-KNTIAFLETGAGKTLIAVLLIRSICNDLQR-QNKKMLAVFLVPKVPLVYQQ 367 (1931)
Q Consensus 292 ~~~~l~~~~~~~~~~~Q~eai~~~l--~-~n~Il~~~TGsGKTliall~i~~~l~~~~~-~~~~~~vL~LvPT~~Lv~Q~ 367 (1931)
..+.+..+++..|||+|.++++.++ . +++|+++|||+|||++|++|+.+.+..... .....++|||+||++|+.||
T Consensus 32 l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~ 111 (579)
T 3sqw_A 32 IHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQI 111 (579)
T ss_dssp HHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHH
Confidence 4478889999999999999999998 4 799999999999999999999887765321 12345799999999999999
Q ss_pred HHHHHHHc-------CCcEEEEeCCCcccccchHHHHhh-cCCccEEEEcHHHHHHHHhcc-cccccceeEEEEeCCCcc
Q 000174 368 AEVIREQT-------GYVVGHYCGEMGQDFWDAQRWQRE-FDTKQVLVMTAQILLNILRHS-IIKMEAINLLILDECHHA 438 (1931)
Q Consensus 368 ~~~l~~~~-------~l~v~~~~G~~~~~~~~~~~w~~~-~~~~~IlV~Tpq~L~d~L~~~-~l~l~~i~lLV~DEaH~~ 438 (1931)
+++++.++ .+.+..+.|+... ...+... ...++|+|+||++|.+++.+. ...+..+++|||||||++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~gg~~~----~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 187 (579)
T 3sqw_A 112 EAEVKKIHDMNYGLKKYACVSLVGGTDF----RAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 187 (579)
T ss_dssp HHHHHHHHHHCGGGTTSCEEEECTTSCH----HHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHhhcccccceEEEEEECCccH----HHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHh
Confidence 99999864 3557777777542 2333333 247899999999999998774 456788999999999999
Q ss_pred cCCCcHHHHHHHHHhhcCC-----CCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCC
Q 000174 439 VKKHPYSLVMSEFYHTTSK-----EKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMP 513 (1931)
Q Consensus 439 ~~~~~~~~im~~~~~~~~~-----~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p 513 (1931)
... +|...+..+....+. ...+++++||||+.. .+..+.. .+...|
T Consensus 188 ~~~-gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~------------~v~~~~~----------------~~l~~~ 238 (579)
T 3sqw_A 188 LEI-GFRDDLETISGILNEKNSKSADNIKTLLFSATLDD------------KVQKLAN----------------NIMNKK 238 (579)
T ss_dssp TST-TTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT------------HHHHHTT----------------TTCCSS
T ss_pred hcC-CCHHHHHHHHHHhhhhhcccccCceEEEEeccCCh------------HHHHHHH----------------HHcCCC
Confidence 874 577666666544321 124789999999864 1222211 112222
Q ss_pred ceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHH
Q 000174 514 SEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAIN 593 (1931)
Q Consensus 514 ~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~ 593 (1931)
....+........ .
T Consensus 239 ~~~~~~~~~~~~~------------------------~------------------------------------------ 252 (579)
T 3sqw_A 239 ECLFLDTVDKNEP------------------------E------------------------------------------ 252 (579)
T ss_dssp EEEEEESSCSSSC------------------------S------------------------------------------
T ss_pred ceEEEeecCcccc------------------------c------------------------------------------
Confidence 2111110000000 0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccc
Q 000174 594 YALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIE 673 (1931)
Q Consensus 594 ~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 673 (1931)
....+.
T Consensus 253 --------------------------------------------------------------------------~~~~i~ 258 (579)
T 3sqw_A 253 --------------------------------------------------------------------------AHERID 258 (579)
T ss_dssp --------------------------------------------------------------------------SCTTEE
T ss_pred --------------------------------------------------------------------------cccccc
Confidence 000000
Q ss_pred cccccccccccCCCchhhhhhhcccCCCCCHH----HHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCC
Q 000174 674 EGELLDSHVVSGGEHVDVIIGAAVADGKVTPK----VQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSF 749 (1931)
Q Consensus 674 ~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~K----v~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~ 749 (1931)
.... .......+ +..+.+.+.. ...+.++||||+++..++.+++.|..... .+
T Consensus 259 ~~~~--------------------~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~ 315 (579)
T 3sqw_A 259 QSVV--------------------ISEKFANSIFAAVEHIKKQIKE--RDSNYKAIIFAPTVKFTSFLCSILKNEFK-KD 315 (579)
T ss_dssp EEEE--------------------EESSTTHHHHHHHHHHHHHHHH--TTTCCEEEEECSSHHHHHHHHHHHHHHHT-TT
T ss_pred eEEE--------------------EecchhhhHHHHHHHHHHHHhh--cCCCCcEEEECCcHHHHHHHHHHHHHhhc-CC
Confidence 0000 00000111 1122222222 24567999999999999999999986311 37
Q ss_pred ceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--
Q 000174 750 VKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD-- 827 (1931)
Q Consensus 750 ~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~-- 827 (1931)
+.+..+|| +|++.+|.+++++|++|+++|||||+++++|||+|+|++||+||+|+++..|+||+|||||.|..
T Consensus 316 ~~v~~~hg-----~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~ 390 (579)
T 3sqw_A 316 LPILEFHG-----KITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGS 390 (579)
T ss_dssp SCEEEEST-----TSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEE
T ss_pred CcEEEecC-----CCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCce
Confidence 88999999 99999999999999999999999999999999999999999999999999999999999999976
Q ss_pred EEEEEec
Q 000174 828 YILMIER 834 (1931)
Q Consensus 828 ~ivlv~~ 834 (1931)
+++++..
T Consensus 391 ~i~~~~~ 397 (579)
T 3sqw_A 391 SVLFICK 397 (579)
T ss_dssp EEEEEEG
T ss_pred EEEEEcc
Confidence 4444443
|
| >1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-39 Score=372.51 Aligned_cols=217 Identities=27% Similarity=0.383 Sum_probs=187.9
Q ss_pred hhhHHHHHHHcCCCcCCHHHHHHHhcCCCCCCC--CCC-----CchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHH
Q 000174 1589 SVDFHALEDALKIKFKDRGLLVEAITHASRPSS--GVS-----CYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLR 1661 (1931)
Q Consensus 1589 ~~~~~~le~~lgy~F~~~~LL~~AlTH~S~~~~--~~~-----~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr 1661 (1931)
...+..||++|||+|+|+.||.+||||+||... ... +||||||||||||+++|++|||.+||++++|.||.+|
T Consensus 18 ~~~~~~l~~~lgy~f~~~~LL~~AlTH~S~~~~~~~~~~~~~~~nerLefLGDavL~l~v~~~L~~~~p~~~eg~Ls~~r 97 (252)
T 1o0w_A 18 RKIVEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLARVK 97 (252)
T ss_dssp HHHHHHHHHHHCCCCSSHHHHHHHHBCHHHHHHHHHTTCTTCCCSHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHhCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 345889999999999999999999999998532 123 8999999999999999999999999999999999999
Q ss_pred HHhhChHHHHHHHHHcCchhhhccCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccC
Q 000174 1662 AAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGR 1741 (1931)
Q Consensus 1662 ~~lv~n~~La~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~ 1741 (1931)
+++|||.+||.+|.++||++||+.+..+.. .++...+++++|+|||+|||||+|+|+
T Consensus 98 ~~lV~~~~la~~a~~lgL~~~l~~~~~e~~-----------------------~~~~~~~~~lad~~EAliGAiyld~g~ 154 (252)
T 1o0w_A 98 SAAASEEVLAMVSRKMNLGKFLFLGKGEEK-----------------------TGGRDRDSILADAFEALLAAIYLDQGY 154 (252)
T ss_dssp HHHTSHHHHHHHHHHTTHHHHCBCCHHHHH-----------------------TTGGGCHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHhCHHHHHHHHHHcCcHHhhccCchhhh-----------------------cCCCCCccHHHhHHHHHHHHHHHcCCH
Confidence 999999999999999999999998765431 122456999999999999999999986
Q ss_pred CceeEEeeeccCCCCCCCC---CCCCCCChHHHHHHHHhhcC-CceeEEec-cC----CeEEEEEEECCEEEEEeecCCH
Q 000174 1742 DTSVVWQVFQPLLDPMVTP---ETLPMHPVRELQERCQQQAE-GLEYKASR-SG----NLATVEVYIDGVQVGVAQNPQK 1812 (1931)
Q Consensus 1742 ~~~~v~~~~~~~l~~~i~~---~~~~~~P~~~L~e~~~~~~~-~~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~sk 1812 (1931)
+ .+++|+..++.+.+.. ....+||++.|||+||+++. .++|++.. .| +.|+|.|+|+|+.+++|.|.||
T Consensus 155 ~--~~~~~i~~~~~~~~~~~~~~~~~~dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SK 232 (252)
T 1o0w_A 155 E--KIKELFEQEFEFYIEKIMKGEMLFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTK 232 (252)
T ss_dssp H--HHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSH
T ss_pred H--HHHHHHHHHHHHHHHHhhhcccccCHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEEeeCCH
Confidence 5 6778888888776543 33468999999999999887 46999754 44 4799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 000174 1813 KMAQKLAARNALAVLKEK 1830 (1931)
Q Consensus 1813 k~Ak~~AA~~AL~~L~~~ 1830 (1931)
|+||+.||+.||+.|...
T Consensus 233 K~Aeq~AA~~AL~~L~~~ 250 (252)
T 1o0w_A 233 KEAEKEAARIAYEKLLKE 250 (252)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999999754
|
| >2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=368.66 Aligned_cols=214 Identities=31% Similarity=0.408 Sum_probs=126.3
Q ss_pred HHHHHHHcCCCcCCHHHHHHHhcCCCCCC--CCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHH
Q 000174 1592 FHALEDALKIKFKDRGLLVEAITHASRPS--SGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNEN 1669 (1931)
Q Consensus 1592 ~~~le~~lgy~F~~~~LL~~AlTH~S~~~--~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~ 1669 (1931)
+..||++|||+| |+.||.+||||+||.. ....+||||||||||||+++|++|||.+||++++|.||.+|+.+|||++
T Consensus 7 l~~l~~~lgy~f-~~~ll~~AlTH~S~~~~~~~~~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~~~ 85 (242)
T 2a11_A 7 RQPLLDALGVDL-PDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQA 85 (242)
T ss_dssp CHHHHHHHTSCC-CHHHHHHHTBCHHHHHHTTSCCCTHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHCCCC-CHHHHHHHhCCcCccccCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCHHH
Confidence 678999999999 9999999999999852 2356999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc---CchhhhccCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCceeE
Q 000174 1670 FARVAVKH---KLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVV 1746 (1931)
Q Consensus 1670 La~~a~~~---gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~~~v 1746 (1931)
||.+|.++ ||++||+.+..+.. .+....+++++|+|||+|||||+|+|++ .+
T Consensus 86 la~~a~~l~~~gL~~~l~~~~~e~~-----------------------~~~~~~~~~lad~~EAliGAiyld~g~~--~~ 140 (242)
T 2a11_A 86 LADVARRLCAEGLGVHVLLGRGEAN-----------------------TGGADKSSILADGMESLLGAIYLQHGME--KA 140 (242)
T ss_dssp HHHHHHHHSSSCSGGGCBCCHHHHH-----------------------TTGGGCHHHHHHHHHHHHHHHHHHHCHH--HH
T ss_pred HHHHHHHhhhhChHHHhhcCchhhh-----------------------cCCCCCccHHHHHHHHHHHHHHhcCCHH--HH
Confidence 99999999 99999998766431 1223568999999999999999999865 67
Q ss_pred EeeeccCCCCCCCCCC---CCCCChHHHHHHHHhhcCC-ceeEEeccCC----eEEEEEEECCEEEEEeecCCHHHHHHH
Q 000174 1747 WQVFQPLLDPMVTPET---LPMHPVRELQERCQQQAEG-LEYKASRSGN----LATVEVYIDGVQVGVAQNPQKKMAQKL 1818 (1931)
Q Consensus 1747 ~~~~~~~l~~~i~~~~---~~~~P~~~L~e~~~~~~~~-~~y~~~~~g~----~f~v~V~v~g~~~~~g~g~skk~Ak~~ 1818 (1931)
++|+.+++.|.+.... ..+|||+.|||+||+++.. ++|++...|+ .|+|.|+|+|+.+++|.|.|||+||+.
T Consensus 141 ~~~i~~~~~~~~~~~~~~~~~~dpkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~skk~Ae~~ 220 (242)
T 2a11_A 141 REVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQK 220 (242)
T ss_dssp HHHHHHHTHHHHHHTTC---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhhccccCChHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHH
Confidence 7888888877654322 3679999999999998865 6998766654 699999999999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 000174 1819 AARNALAVLKEKE 1831 (1931)
Q Consensus 1819 AA~~AL~~L~~~~ 1831 (1931)
||+.||+.|....
T Consensus 221 AA~~AL~~L~~~~ 233 (242)
T 2a11_A 221 AAAAAWKALEVLD 233 (242)
T ss_dssp -------------
T ss_pred HHHHHHHHHhhcc
Confidence 9999999997653
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-37 Score=396.55 Aligned_cols=331 Identities=22% Similarity=0.234 Sum_probs=146.1
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc---cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK---KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV 358 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~---~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv 358 (1931)
++...+..+...+.+.++++..|+++|.++++.++. +++|++++||||||++|++++.+.+.. ....+++|||+
T Consensus 93 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~---~~~~~~~lil~ 169 (479)
T 3fmp_B 93 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP---ANKYPQCLCLS 169 (479)
T ss_dssp CSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCT---TSCSCCEEEEC
T ss_pred CHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhh---cCCCCcEEEEe
Confidence 444444444455888999999999999999999997 789999999999999999998765542 23445799999
Q ss_pred CChhHHHHHHHHHHHHc----CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhc-ccccccceeEEEEe
Q 000174 359 PKVPLVYQQAEVIREQT----GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH-SIIKMEAINLLILD 433 (1931)
Q Consensus 359 PT~~Lv~Q~~~~l~~~~----~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~-~~l~l~~i~lLV~D 433 (1931)
||++|+.|++++++.+. ++.+....|+...... .....+|+|+||++|.+++.+ +.+.+.++++||||
T Consensus 170 Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViD 242 (479)
T 3fmp_B 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 242 (479)
T ss_dssp SSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc-------ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEE
Confidence 99999999999988754 4677777776543221 124678999999999999865 67788999999999
Q ss_pred CCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCC
Q 000174 434 ECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMP 513 (1931)
Q Consensus 434 EaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p 513 (1931)
|||++.....|...+..+....+. .++++++||||.. .+..+.. .+.+.|
T Consensus 243 Eah~~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~------------~~~~~~~----------------~~~~~~ 292 (479)
T 3fmp_B 243 EADVMIATQGHQDQSIRIQRMLPR--NCQMLLFSATFED------------SVWKFAQ----------------KVVPDP 292 (479)
T ss_dssp CHHHHHTSTTHHHHHHHHHTTSCT--TSEEEEEESCCCH------------HHHHHHH----------------HHSSSE
T ss_pred CHHHHhhcCCcHHHHHHHHhhCCc--cceEEEEeCCCCH------------HHHHHHH----------------HHcCCC
Confidence 999999766788777777665443 4899999999863 1111111 112222
Q ss_pred ceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHH
Q 000174 514 SEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAIN 593 (1931)
Q Consensus 514 ~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~ 593 (1931)
....+ ..... ..
T Consensus 293 ~~i~~--~~~~~------~~------------------------------------------------------------ 304 (479)
T 3fmp_B 293 NVIKL--KREEE------TL------------------------------------------------------------ 304 (479)
T ss_dssp EEEEE--C------------------------------------------------------------------------
T ss_pred eEEec--ccccc------Cc------------------------------------------------------------
Confidence 11111 00000 00
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccc
Q 000174 594 YALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIE 673 (1931)
Q Consensus 594 ~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 673 (1931)
..+.+ .++.
T Consensus 305 ---~~~~~------------------------------~~~~-------------------------------------- 313 (479)
T 3fmp_B 305 ---DTIKQ------------------------------YYVL-------------------------------------- 313 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---CCceE------------------------------EEEE--------------------------------------
Confidence 00000 0000
Q ss_pred cccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeE
Q 000174 674 EGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSA 753 (1931)
Q Consensus 674 ~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~ 753 (1931)
......|...|..++.. ....++||||+++..+..+++.|.. .++.+.
T Consensus 314 -------------------------~~~~~~~~~~l~~~~~~---~~~~~~lvF~~s~~~~~~l~~~L~~----~~~~v~ 361 (479)
T 3fmp_B 314 -------------------------CSSRDEKFQALCNLYGA---ITIAQAMIFCHTRKTASWLAAELSK----EGHQVA 361 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------eCCHHHHHHHHHHHHhh---ccCCceEEEeCcHHHHHHHHHHHHh----CCccEE
Confidence 00001123333333332 2346899999999999999999987 578899
Q ss_pred EEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCC------CHHHHHHhhccCCCCCCc
Q 000174 754 SLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAK------TVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 754 ~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~------s~~~yiQr~GRa~R~Gs~ 827 (1931)
.+|| ++++.+|..++++|++|+++|||||+++++|||+|+|++||+||+|+ +..+|+||+|||||.|..
T Consensus 362 ~lh~-----~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~ 436 (479)
T 3fmp_B 362 LLSG-----EMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKR 436 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EecC-----CCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCC
Confidence 9999 99999999999999999999999999999999999999999999995 568999999999999876
Q ss_pred E
Q 000174 828 Y 828 (1931)
Q Consensus 828 ~ 828 (1931)
+
T Consensus 437 G 437 (479)
T 3fmp_B 437 G 437 (479)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-37 Score=386.32 Aligned_cols=331 Identities=17% Similarity=0.217 Sum_probs=148.1
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK 360 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT 360 (1931)
.+++.+..+...+.+...++.+|+++|.++++.+++ +++++++|||+|||++|++++.+.+.. ...+.++|||+||
T Consensus 22 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~---~~~~~~~lil~P~ 98 (394)
T 1fuu_A 22 KFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT---SVKAPQALMLAPT 98 (394)
T ss_dssp SSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT---TCCSCCEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhc---cCCCCCEEEEcCC
Confidence 455555444455888889999999999999999998 899999999999999999998766542 2345689999999
Q ss_pred hhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCc
Q 000174 361 VPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHH 437 (1931)
Q Consensus 361 ~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~ 437 (1931)
++|+.||+++++++. ++++..++|+..... ....+.+++|+|+||+.|.+.+.++.+.+.++++||+||||+
T Consensus 99 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~ 173 (394)
T 1fuu_A 99 RELALQIQKVVMALAFHMDIKVHACIGGTSFVE-----DAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE 173 (394)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHH-----HHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEeCCCchHH-----HHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHH
Confidence 999999999999864 688999998865321 122234789999999999999988888889999999999999
Q ss_pred ccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeE
Q 000174 438 AVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVV 517 (1931)
Q Consensus 438 ~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~ 517 (1931)
+... .|...+..+....+ ..+++++|||||.. .+..+. ..+...|....
T Consensus 174 ~~~~-~~~~~~~~~~~~~~--~~~~~i~~SAT~~~------------~~~~~~----------------~~~~~~~~~~~ 222 (394)
T 1fuu_A 174 MLSS-GFKEQIYQIFTLLP--PTTQVVLLSATMPN------------DVLEVT----------------TKFMRNPVRIL 222 (394)
T ss_dssp HHHT-TCHHHHHHHHHHSC--TTCEEEEECSSCCH------------HHHHHH----------------HHHCCSCEEEE
T ss_pred hhCC-CcHHHHHHHHHhCC--CCceEEEEEEecCH------------HHHHHH----------------HHhcCCCeEEE
Confidence 9875 56666666665543 24789999999863 111111 11112222111
Q ss_pred EEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHH
Q 000174 518 VEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALG 597 (1931)
Q Consensus 518 ~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~ 597 (1931)
...... . . .
T Consensus 223 ~~~~~~-~----~------------------------------------------------------------------~ 231 (394)
T 1fuu_A 223 VKKDEL-T----L------------------------------------------------------------------E 231 (394)
T ss_dssp ECC-----------------------------------------------------------------------------
T ss_pred ecCccc-c----C------------------------------------------------------------------C
Confidence 100000 0 0 0
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccc
Q 000174 598 ELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGEL 677 (1931)
Q Consensus 598 ~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l 677 (1931)
.+.. .+..
T Consensus 232 ~~~~------------------------------~~~~------------------------------------------ 239 (394)
T 1fuu_A 232 GIKQ------------------------------FYVN------------------------------------------ 239 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceE------------------------------EEEE------------------------------------------
Confidence 0000 0000
Q ss_pred cccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEc
Q 000174 678 LDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIG 757 (1931)
Q Consensus 678 ~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G 757 (1931)
......|...+.+++... ...++||||+++..+..+++.|+. .++.+..+||
T Consensus 240 ---------------------~~~~~~~~~~l~~~~~~~---~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~~~~ 291 (394)
T 1fuu_A 240 ---------------------VEEEEYKYECLTDLYDSI---SVTQAVIFCNTRRKVEELTTKLRN----DKFTVSAIYS 291 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------cCchhhHHHHHHHHHhcC---CCCcEEEEECCHHHHHHHHHHHHH----cCCeEEEeeC
Confidence 000001222233333322 346899999999999999999987 5788999999
Q ss_pred cCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 758 HNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 758 ~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
+++..+|.+++++|++|+.+|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.
T Consensus 292 -----~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~ 356 (394)
T 1fuu_A 292 -----DLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRK 356 (394)
T ss_dssp ----------------------------------------------------------------------
T ss_pred -----CCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999876
|
| >3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-38 Score=375.63 Aligned_cols=221 Identities=23% Similarity=0.255 Sum_probs=121.6
Q ss_pred HHHHHHcCCC-cCCHHHHHHHhcCCCCCCCC---------CCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 000174 1593 HALEDALKIK-FKDRGLLVEAITHASRPSSG---------VSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRA 1662 (1931)
Q Consensus 1593 ~~le~~lgy~-F~~~~LL~~AlTH~S~~~~~---------~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~ 1662 (1931)
..||++|||+ |+|+.||.+||||+||.... ..+||||||||||||+++|++|||.+||++++|.||.+|+
T Consensus 86 ~~lE~~igy~~F~d~~LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDavL~l~vs~~L~~~~P~~~eG~Lt~lr~ 165 (341)
T 3rv0_A 86 TDVDMFIKYPVVYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKE 165 (341)
T ss_dssp CTTGGGCSSCCCSCHHHHHHHHCCCCCC---CCSCHHHHGGGCTHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred hHHHHhcCCCCcCCHHHHHHHhcCcCccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Confidence 3589999999 99999999999999997532 3589999999999999999999999999999999999999
Q ss_pred HhhChHHHHHHHHHcCchhhhccCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccc-cC
Q 000174 1663 AAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDS-GR 1741 (1931)
Q Consensus 1663 ~lv~n~~La~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDs-g~ 1741 (1931)
++|||.+||.+|.++||+++|+++.+.... .++...+++++|+|||+|||||+|+ |.
T Consensus 166 ~lVs~~~La~iA~~lgL~~~l~~~~g~~~~----------------------~~~~~~~~ilaD~fEAlIGAIylD~~~~ 223 (341)
T 3rv0_A 166 SIVNNNNLFDWSTKLNFTKRLQGNIATPTR----------------------VVKDKMSKRYADCVEAYIGALVIDRFGT 223 (341)
T ss_dssp HHHSHHHHHHHHHHTTTTTTTCCSSCCC--------------------------CCHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHhCHHHHHHHHHHcCcHHHhhhcCChhhh----------------------ccCCccccHHHHHHHHHHHHHhhcCccC
Confidence 999999999999999999999964322100 0112358999999999999999999 33
Q ss_pred CceeEEeeeccCCCCCCCC-------CCCCCCChHHHHHHHHhhcC--CceeEEeccCCeEEEEEEECCEEEEEeecCCH
Q 000174 1742 DTSVVWQVFQPLLDPMVTP-------ETLPMHPVRELQERCQQQAE--GLEYKASRSGNLATVEVYIDGVQVGVAQNPQK 1812 (1931)
Q Consensus 1742 ~~~~v~~~~~~~l~~~i~~-------~~~~~~P~~~L~e~~~~~~~--~~~y~~~~~g~~f~v~V~v~g~~~~~g~g~sk 1812 (1931)
+++.+++|+.+++.+.+.. ....+|||+.||||||+++. .++|++..+.+.|+|.|+|+|+.+|.|.|.||
T Consensus 224 G~~~a~~fi~~l~~~~l~~~~~~~~~~~~~~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~GpF~v~v~i~~~~~g~G~G~SK 303 (341)
T 3rv0_A 224 EFLDIKEWLEELSEKKLAKSSQMVIKEPLNKNAKNELAELLQINKLGHKLHYRKLTEMPPFRVEVKIGDILLDEAEGNSI 303 (341)
T ss_dssp TTHHHHHHHHHHTHHHHHCGGGC---------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhhhccccccCHHHHHHHHHHHcCCCCCceEEEEeccCCEEEEEEECCEEEEEEEeCCH
Confidence 4557788888877776543 13458999999999999874 35899765544599999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhh
Q 000174 1813 KMAQKLAARNALAVLKEKETAEA 1835 (1931)
Q Consensus 1813 k~Ak~~AA~~AL~~L~~~~~~~~ 1835 (1931)
|+|++.||+.||+.|+.......
T Consensus 304 K~AEq~AA~~AL~~L~~~~k~~~ 326 (341)
T 3rv0_A 304 REAEHRAAMKVLENDELLRKYSV 326 (341)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHhhhhhhhhh
Confidence 99999999999999987644433
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-35 Score=360.96 Aligned_cols=304 Identities=23% Similarity=0.284 Sum_probs=230.2
Q ss_pred hhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHH
Q 000174 293 SEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVI 371 (1931)
Q Consensus 293 ~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l 371 (1931)
.+.+.+.|+..|+|+|.++++.+++ +++++.+|||+|||++|++++.+. +.++|||+|+++|+.||++++
T Consensus 6 ~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~---------~~~~liv~P~~~L~~q~~~~~ 76 (337)
T 2z0m_A 6 EQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL---------GMKSLVVTPTRELTRQVASHI 76 (337)
T ss_dssp HHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH---------TCCEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh---------cCCEEEEeCCHHHHHHHHHHH
Confidence 3678889999999999999999998 899999999999999999987642 356999999999999999999
Q ss_pred HHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHH
Q 000174 372 REQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVM 448 (1931)
Q Consensus 372 ~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im 448 (1931)
+++. +.++..++|+.... .+...+..++|+|+||++|.+.+.++.+.+.++++||+||||++... .+...+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~-~~~~~~ 150 (337)
T 2z0m_A 77 RDIGRYMDTKVAEVYGGMPYK-----AQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEM-GFIDDI 150 (337)
T ss_dssp HHHTTTSCCCEEEECTTSCHH-----HHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHT-TCHHHH
T ss_pred HHHhhhcCCcEEEEECCcchH-----HHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhcc-ccHHHH
Confidence 9764 67899998876532 22233456999999999999999888888999999999999999875 566666
Q ss_pred HHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHH-HHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhhh
Q 000174 449 SEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKIC-NLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLW 527 (1931)
Q Consensus 449 ~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~-~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~ 527 (1931)
..+....+ ..+++++|||||.. .+. .+...+ ..+.........
T Consensus 151 ~~~~~~~~--~~~~~~~~SAT~~~------------~~~~~~~~~~-----------------~~~~~~~~~~~~----- 194 (337)
T 2z0m_A 151 KIILAQTS--NRKITGLFSATIPE------------EIRKVVKDFI-----------------TNYEEIEACIGL----- 194 (337)
T ss_dssp HHHHHHCT--TCSEEEEEESCCCH------------HHHHHHHHHS-----------------CSCEEEECSGGG-----
T ss_pred HHHHhhCC--cccEEEEEeCcCCH------------HHHHHHHHhc-----------------CCceeeeccccc-----
Confidence 66665443 34788899999863 111 111111 111100000000
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000174 528 SLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKV 607 (1931)
Q Consensus 528 ~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~ 607 (1931)
T Consensus 195 -------------------------------------------------------------------------------- 194 (337)
T 2z0m_A 195 -------------------------------------------------------------------------------- 194 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCC
Q 000174 608 AQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGE 687 (1931)
Q Consensus 608 ~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e 687 (1931)
..+.... ..
T Consensus 195 --------------------------------------------------------------~~~~~~~------~~--- 203 (337)
T 2z0m_A 195 --------------------------------------------------------------ANVEHKF------VH--- 203 (337)
T ss_dssp --------------------------------------------------------------GGEEEEE------EE---
T ss_pred --------------------------------------------------------------CCceEEE------EE---
Confidence 0000000 00
Q ss_pred chhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHH
Q 000174 688 HVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTF 767 (1931)
Q Consensus 688 ~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~ 767 (1931)
...+....++.+. ...+.++||||+++..+..+++.|. .+..+|| +++..
T Consensus 204 --------------~~~~~~~~~~~~~---~~~~~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~-----~~~~~ 253 (337)
T 2z0m_A 204 --------------VKDDWRSKVQALR---ENKDKGVIVFVRTRNRVAKLVRLFD--------NAIELRG-----DLPQS 253 (337)
T ss_dssp --------------CSSSSHHHHHHHH---TCCCSSEEEECSCHHHHHHHHTTCT--------TEEEECT-----TSCHH
T ss_pred --------------eChHHHHHHHHHH---hCCCCcEEEEEcCHHHHHHHHHHhh--------hhhhhcC-----CCCHH
Confidence 0000011122222 2456789999999999999988775 4678999 99999
Q ss_pred HHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE
Q 000174 768 QMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY 828 (1931)
Q Consensus 768 ~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ 828 (1931)
+|.+++++|++|+.+|||||+++++|+|+|++++||+||+|+++.+|+||+|||||.|+..
T Consensus 254 ~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g 314 (337)
T 2z0m_A 254 VRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKG 314 (337)
T ss_dssp HHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCE
T ss_pred HHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999998773
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-35 Score=376.27 Aligned_cols=314 Identities=15% Similarity=0.188 Sum_probs=231.0
Q ss_pred chhhhhc-CCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHH
Q 000174 292 KSEAKEK-MPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAE 369 (1931)
Q Consensus 292 ~~~~l~~-~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~ 369 (1931)
..+.+.+ .++..|||+|.++++.+++ +|+++.+|||+|||++|++|+... .+++|||+|+++|+.||.+
T Consensus 13 ~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---------~g~~lvi~P~~aL~~q~~~ 83 (523)
T 1oyw_A 13 AKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL---------NGLTVVVSPLISLMKDQVD 83 (523)
T ss_dssp HHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS---------SSEEEEECSCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh---------CCCEEEECChHHHHHHHHH
Confidence 3456666 8999999999999999998 999999999999999999997531 3579999999999999999
Q ss_pred HHHHHcCCcEEEEeCCCcccccchHHHHhh-cCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCC-CcHHHH
Q 000174 370 VIREQTGYVVGHYCGEMGQDFWDAQRWQRE-FDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKK-HPYSLV 447 (1931)
Q Consensus 370 ~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~-~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~-~~~~~i 447 (1931)
.++. +++.+..++|+...+.+. ..+... ....+|+|+||++|........+...++++|||||||++... +.|...
T Consensus 84 ~l~~-~gi~~~~l~~~~~~~~~~-~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~ 161 (523)
T 1oyw_A 84 QLQA-NGVAAACLNSTQTREQQL-EVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPE 161 (523)
T ss_dssp HHHH-TTCCEEEECTTSCHHHHH-HHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHH
T ss_pred HHHH-cCCcEEEEeCCCCHHHHH-HHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHH
Confidence 9987 588999998886644322 223322 246899999999996432223345578999999999999753 334443
Q ss_pred HHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcC---CeEEEecchHHHhhhCCCCceeEEEeccch
Q 000174 448 MSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLD---SVVCTIKDRKELEKHVPMPSEVVVEYDKAA 524 (1931)
Q Consensus 448 m~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~---~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~ 524 (1931)
+..+..........++++|||||.. .. ...+...+. ..+... ....|.....
T Consensus 162 ~~~l~~l~~~~~~~~~i~lSAT~~~--------~~---~~~i~~~l~~~~~~~~~~--------~~~r~~l~~~------ 216 (523)
T 1oyw_A 162 YAALGQLRQRFPTLPFMALTATADD--------TT---RQDIVRLLGLNDPLIQIS--------SFDRPNIRYM------ 216 (523)
T ss_dssp HHGGGGHHHHCTTSCEEEEESCCCH--------HH---HHHHHHHHTCCSCEEEEC--------CCCCTTEEEE------
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCH--------HH---HHHHHHHhCCCCCeEEeC--------CCCCCceEEE------
Confidence 3322221111223678999999863 00 011111111 000000 0000000000
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHH
Q 000174 525 SLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCA 604 (1931)
Q Consensus 525 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a 604 (1931)
T Consensus 217 -------------------------------------------------------------------------------- 216 (523)
T 1oyw_A 217 -------------------------------------------------------------------------------- 216 (523)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccccccccccc
Q 000174 605 YKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVS 684 (1931)
Q Consensus 605 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s 684 (1931)
T Consensus 217 -------------------------------------------------------------------------------- 216 (523)
T 1oyw_A 217 -------------------------------------------------------------------------------- 216 (523)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccc
Q 000174 685 GGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEM 764 (1931)
Q Consensus 685 ~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~ 764 (1931)
+ .....+...|+++|... .+.++||||+++..++.+++.|.. .++.+..+|| ++
T Consensus 217 ------------v--~~~~~~~~~l~~~l~~~---~~~~~IVf~~sr~~~e~l~~~L~~----~g~~~~~~h~-----~l 270 (523)
T 1oyw_A 217 ------------L--MEKFKPLDQLMRYVQEQ---RGKSGIIYCNSRAKVEDTAARLQS----KGISAAAYHA-----GL 270 (523)
T ss_dssp ------------E--EECSSHHHHHHHHHHHT---TTCCEEEECSSHHHHHHHHHHHHH----TTCCEEEECT-----TS
T ss_pred ------------E--EeCCCHHHHHHHHHHhc---CCCcEEEEeCCHHHHHHHHHHHHH----CCCCEEEecC-----CC
Confidence 0 00122455566666543 467899999999999999999998 5789999999 99
Q ss_pred cHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 765 RTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 765 ~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
+..+|.+++++|++|+.+|||||+++++|||+|+|++||+||+|+|+.+|+||+|||||.|..
T Consensus 271 ~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~ 333 (523)
T 1oyw_A 271 ENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLP 333 (523)
T ss_dssp CHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSC
T ss_pred CHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999866
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=378.86 Aligned_cols=315 Identities=15% Similarity=0.205 Sum_probs=230.4
Q ss_pred hhhhhc-CCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHH
Q 000174 293 SEAKEK-MPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEV 370 (1931)
Q Consensus 293 ~~~l~~-~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~ 370 (1931)
.+.+.. .|+..|||+|.++++.++. +|+|+.+|||+|||++|++|+.. ..+++|||+|+++|+.||.+.
T Consensus 33 ~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~---------~~g~~lVisP~~~L~~q~~~~ 103 (591)
T 2v1x_A 33 KDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC---------SDGFTLVICPLISLMEDQLMV 103 (591)
T ss_dssp HHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT---------SSSEEEEECSCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH---------cCCcEEEEeCHHHHHHHHHHH
Confidence 356666 6999999999999999999 89999999999999999999853 145899999999999999999
Q ss_pred HHHHcCCcEEEEeCCCcccccchHHHHhh---cCCccEEEEcHHHHH------HHHhcccccccceeEEEEeCCCcccCC
Q 000174 371 IREQTGYVVGHYCGEMGQDFWDAQRWQRE---FDTKQVLVMTAQILL------NILRHSIIKMEAINLLILDECHHAVKK 441 (1931)
Q Consensus 371 l~~~~~l~v~~~~G~~~~~~~~~~~w~~~---~~~~~IlV~Tpq~L~------d~L~~~~l~l~~i~lLV~DEaH~~~~~ 441 (1931)
++.+ ++++..++|+...... ...|... ....+|+|+||++|. +.+.+ ...+.++++|||||||++...
T Consensus 104 l~~~-gi~~~~l~~~~~~~~~-~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i~~iViDEAH~is~~ 180 (591)
T 2v1x_A 104 LKQL-GISATMLNASSSKEHV-KWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRFTRIAVDEVHCCSQW 180 (591)
T ss_dssp HHHH-TCCEEECCSSCCHHHH-HHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCEEEEEEETGGGGSTT
T ss_pred HHhc-CCcEEEEeCCCCHHHH-HHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCCcEEEEECccccccc
Confidence 9986 8999999998764332 2223332 357899999999874 23332 345778999999999998753
Q ss_pred -CcHHHHHHH---HHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCC---eEEEecchHHHhhhCCCCc
Q 000174 442 -HPYSLVMSE---FYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDS---VVCTIKDRKELEKHVPMPS 514 (1931)
Q Consensus 442 -~~~~~im~~---~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~---~i~t~~~~~~l~~~~~~p~ 514 (1931)
|.|...+.. +.... ...++++|||||.. .. ...+...+.. .++.. ....|.
T Consensus 181 g~dfr~~~~~l~~l~~~~---~~~~ii~lSAT~~~--------~v---~~~i~~~l~~~~~~~~~~--------~~~r~n 238 (591)
T 2v1x_A 181 GHDFRPDYKALGILKRQF---PNASLIGLTATATN--------HV---LTDAQKILCIEKCFTFTA--------SFNRPN 238 (591)
T ss_dssp CTTCCGGGGGGGHHHHHC---TTSEEEEEESSCCH--------HH---HHHHHHHTTCCSCEEEEC--------CCCCTT
T ss_pred ccccHHHHHHHHHHHHhC---CCCcEEEEecCCCH--------HH---HHHHHHHhCCCCcEEEec--------CCCCcc
Confidence 334433322 22222 24789999999863 01 1111111110 00000 000010
Q ss_pred eeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHH
Q 000174 515 EVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINY 594 (1931)
Q Consensus 515 e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~ 594 (1931)
.......
T Consensus 239 l~~~v~~------------------------------------------------------------------------- 245 (591)
T 2v1x_A 239 LYYEVRQ------------------------------------------------------------------------- 245 (591)
T ss_dssp EEEEEEE-------------------------------------------------------------------------
T ss_pred cEEEEEe-------------------------------------------------------------------------
Confidence 0000000
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccc
Q 000174 595 ALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEE 674 (1931)
Q Consensus 595 ~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 674 (1931)
T Consensus 246 -------------------------------------------------------------------------------- 245 (591)
T 2v1x_A 246 -------------------------------------------------------------------------------- 245 (591)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEE
Q 000174 675 GELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSAS 754 (1931)
Q Consensus 675 ~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~ 754 (1931)
.......++..|++++... ..+.++||||+++..++.+++.|.. .++.+..
T Consensus 246 -----------------------~~~~~~~~~~~l~~~l~~~--~~~~~~IVf~~sr~~~e~la~~L~~----~g~~~~~ 296 (591)
T 2v1x_A 246 -----------------------KPSNTEDFIEDIVKLINGR--YKGQSGIIYCFSQKDSEQVTVSLQN----LGIHAGA 296 (591)
T ss_dssp -----------------------CCSSHHHHHHHHHHHHTTT--TTTCEEEEECSSHHHHHHHHHHHHH----TTCCEEE
T ss_pred -----------------------CCCcHHHHHHHHHHHHHHh--ccCCCeEEEeCcHHHHHHHHHHHHH----CCCCEEE
Confidence 0000012334444444332 2467899999999999999999998 5789999
Q ss_pred EEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE
Q 000174 755 LIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY 828 (1931)
Q Consensus 755 l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ 828 (1931)
+|| +|++.+|.+++++|++|+++|||||+++++|||+|+|++||+||+|+|+.+|+||+|||||.|...
T Consensus 297 ~h~-----~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g 365 (591)
T 2v1x_A 297 YHA-----NLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKA 365 (591)
T ss_dssp ECT-----TSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCE
T ss_pred ecC-----CCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCc
Confidence 999 999999999999999999999999999999999999999999999999999999999999999773
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-35 Score=369.93 Aligned_cols=304 Identities=15% Similarity=0.156 Sum_probs=221.4
Q ss_pred hhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHH
Q 000174 296 KEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQ 374 (1931)
Q Consensus 296 l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~ 374 (1931)
+++....+|+|+|.++++.+++ +|+|+++|||+|||++|++++...+. .++++|||+||++|+.||+++++.+
T Consensus 14 l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~------~~~~~lil~Pt~~L~~q~~~~~~~~ 87 (414)
T 3oiy_A 14 FKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR------KGKKSALVFPTVTLVKQTLERLQKL 87 (414)
T ss_dssp HHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT------TTCCEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc------CCCEEEEEECCHHHHHHHHHHHHHH
Confidence 4443345899999999999998 89999999999999999998876552 3567999999999999999999997
Q ss_pred --cCCcEEEEeCCCcccccchHHHHhhcCC-ccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCC----------
Q 000174 375 --TGYVVGHYCGEMGQDFWDAQRWQREFDT-KQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKK---------- 441 (1931)
Q Consensus 375 --~~l~v~~~~G~~~~~~~~~~~w~~~~~~-~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~---------- 441 (1931)
.++++..++|+.....+ ...|.....+ ++|+|+||++|.+++.. +.+.++++|||||||++...
T Consensus 88 ~~~~~~v~~~~g~~~~~~~-~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~l~~ 164 (414)
T 3oiy_A 88 ADEKVKIFGFYSSMKKEEK-EKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMM 164 (414)
T ss_dssp CCSSCCEEECCTTSCHHHH-HHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHHHHH
T ss_pred ccCCceEEEEECCCChhhH-HHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhHHhh
Confidence 47899999998865432 2334444444 99999999999988875 67789999999999987532
Q ss_pred CcHHHH-HHHHHhhcC---------CCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCC
Q 000174 442 HPYSLV-MSEFYHTTS---------KEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVP 511 (1931)
Q Consensus 442 ~~~~~i-m~~~~~~~~---------~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~ 511 (1931)
++|... +..++...+ ....++++++||||....... . + +...+.- .+.
T Consensus 165 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~---~----~--~~~~~~~-------------~~~ 222 (414)
T 3oiy_A 165 VGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRP---L----L--FRDLLNF-------------TVG 222 (414)
T ss_dssp TTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTT---H----H--HHHHHSC-------------CSS
T ss_pred cCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHH---H----H--HHHhhcc-------------CcC
Confidence 122222 344443322 114579999999954311000 0 0 0000000 000
Q ss_pred CCceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHH
Q 000174 512 MPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRA 591 (1931)
Q Consensus 512 ~p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~ 591 (1931)
..
T Consensus 223 ~~------------------------------------------------------------------------------ 224 (414)
T 3oiy_A 223 RL------------------------------------------------------------------------------ 224 (414)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccc
Q 000174 592 INYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNE 671 (1931)
Q Consensus 592 ~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 671 (1931)
......
T Consensus 225 --------------------------------------------------------------------------~~~~~~ 230 (414)
T 3oiy_A 225 --------------------------------------------------------------------------VSVARN 230 (414)
T ss_dssp --------------------------------------------------------------------------CCCCCS
T ss_pred --------------------------------------------------------------------------cccccc
Confidence 000000
Q ss_pred cccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCce
Q 000174 672 IEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVK 751 (1931)
Q Consensus 672 l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~ 751 (1931)
+.. .. ...+|...|.++|... +.++||||+++..++.+++.|.. .+++
T Consensus 231 i~~---------------------~~---~~~~~~~~l~~~l~~~----~~~~lVF~~~~~~~~~l~~~L~~----~~~~ 278 (414)
T 3oiy_A 231 ITH---------------------VR---ISSRSKEKLVELLEIF----RDGILIFAQTEEEGKELYEYLKR----FKFN 278 (414)
T ss_dssp EEE---------------------EE---ESSCCHHHHHHHHHHH----CSSEEEEESSHHHHHHHHHHHHH----TTCC
T ss_pred chh---------------------ee---eccCHHHHHHHHHHHc----CCCEEEEECCHHHHHHHHHHHHH----cCCc
Confidence 000 00 0013555667777663 47899999999999999999998 5788
Q ss_pred eE-EEEccCCCccccHHHHHHHHHHhhcCCceEEEE----ecccccCCCCCC-CCEEEEcCCC--CCHHHHHHhhccCCC
Q 000174 752 SA-SLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVA----TSVAEEGLDIRQ-CNVVIRFDLA--KTVLAYIQSRGRARK 823 (1931)
Q Consensus 752 ~~-~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVa----TdVaeeGlDip~-~~lVI~fD~p--~s~~~yiQr~GRa~R 823 (1931)
+. .+|| . +|+ +++|++|+++|||| |+++++|||+|+ |++||+||+| +++.+|+||+|||||
T Consensus 279 ~~~~~h~-----~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR 347 (414)
T 3oiy_A 279 VGETWSE-----F----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSR 347 (414)
T ss_dssp EEESSSC-----H----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCC
T ss_pred eehhhcC-----c----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCcccc
Confidence 87 8888 3 333 99999999999999 999999999999 9999999999 999999999999999
Q ss_pred CC
Q 000174 824 PG 825 (1931)
Q Consensus 824 ~G 825 (1931)
.|
T Consensus 348 ~g 349 (414)
T 3oiy_A 348 IL 349 (414)
T ss_dssp EE
T ss_pred CC
Confidence 87
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=370.73 Aligned_cols=348 Identities=22% Similarity=0.235 Sum_probs=234.8
Q ss_pred CCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCc-E
Q 000174 302 EQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYV-V 379 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~-v 379 (1931)
.+|+|||.++++.+++ +++|++++||+|||++|++++... +.++||||||++|+.||.+++++ ++++ +
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---------~~~~Lvl~P~~~L~~Q~~~~~~~-~~~~~v 161 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---------STPTLIVVPTLALAEQWKERLGI-FGEEYV 161 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---------CSCEEEEESSHHHHHHHHHHGGG-GCGGGE
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---------CCCEEEEECCHHHHHHHHHHHHh-CCCcce
Confidence 5899999999999988 779999999999999999988753 35699999999999999999999 7999 9
Q ss_pred EEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCC
Q 000174 380 GHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEK 459 (1931)
Q Consensus 380 ~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~ 459 (1931)
+.++|+.. ...+|+|+||+.+...+.. ...++++|||||||++.+. .|..+++.+ .
T Consensus 162 ~~~~g~~~-------------~~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~-~~~~~~~~~-------~ 217 (472)
T 2fwr_A 162 GEFSGRIK-------------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAE-SYVQIAQMS-------I 217 (472)
T ss_dssp EEBSSSCB-------------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTST-TTHHHHHTC-------C
T ss_pred EEECCCcC-------------CcCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCCh-HHHHHHHhc-------C
Confidence 99988754 2468999999999876542 1256999999999999875 676654322 2
Q ss_pred CcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhhhHHHHHHHHHHHH
Q 000174 460 RPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEVA 539 (1931)
Q Consensus 460 ~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~l~~~ 539 (1931)
.+++|+|||||.+.++. ...++..+...++.....+....+...+....+..+........ +..+...
T Consensus 218 ~~~~l~lSATp~~~~~~---------~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~ 285 (472)
T 2fwr_A 218 APFRLGLTATFEREDGR---------HEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVE---YEKREKV 285 (472)
T ss_dssp CSEEEEEESCCCCTTSG---------GGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHH---TTTTTHH
T ss_pred CCeEEEEecCccCCCCH---------HHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHH---HHHHHHH
Confidence 47899999999965542 12456667777666533332223333333322322221110000 0000000
Q ss_pred HHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 000174 540 VEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDE 619 (1931)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~ 619 (1931)
+...+. .....+..... ............ .....
T Consensus 286 ~~~~l~----~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~----------------------------------- 319 (472)
T 2fwr_A 286 YKQFLR----ARGITLRRAED------FNKIVMASGYDE-RAYEA----------------------------------- 319 (472)
T ss_dssp HHSCSS----SCCCTTTCCSS------STTTTTTTCCSS-SSSTT-----------------------------------
T ss_pred HHHHHH----hcCccccchhh------HHHHHHHhccCH-HHHHH-----------------------------------
Confidence 000000 00000000000 000000000000 00000
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhhhhhcccC
Q 000174 620 RANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVAD 699 (1931)
Q Consensus 620 ~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~ 699 (1931)
.... .... ...
T Consensus 320 -----~~~~---~~~~-------------------------------------------------------------~~~ 330 (472)
T 2fwr_A 320 -----LRAW---EEAR-------------------------------------------------------------RIA 330 (472)
T ss_dssp -----THHH---HHHH-------------------------------------------------------------HHH
T ss_pred -----HHHH---HHHH-------------------------------------------------------------HHh
Confidence 0000 0000 000
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcC
Q 000174 700 GKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDG 779 (1931)
Q Consensus 700 ~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G 779 (1931)
...+.|...|.++|... .+.++||||+++.+++.+++.|. +..+|| +++..+|++++++|++|
T Consensus 331 ~~~~~k~~~l~~~l~~~---~~~k~lvF~~~~~~~~~l~~~l~---------~~~~~g-----~~~~~~R~~~~~~F~~g 393 (472)
T 2fwr_A 331 FNSKNKIRKLREILERH---RKDKIIIFTRHNELVYRISKVFL---------IPAITH-----RTSREEREEILEGFRTG 393 (472)
T ss_dssp HSCSHHHHHHHHHHHHT---SSSCBCCBCSCHHHHHHHHHHTT---------CCBCCS-----SSCSHHHHTHHHHHHHS
T ss_pred hcChHHHHHHHHHHHhC---CCCcEEEEECCHHHHHHHHHHhC---------cceeeC-----CCCHHHHHHHHHHHhCC
Confidence 12357888899988773 57899999999999999998874 345788 89999999999999999
Q ss_pred CceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 780 RVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 780 ~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
+++|||||+++++|||+|+|++||+||+|+|+..|+||+|||+|.|+.
T Consensus 394 ~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~ 441 (472)
T 2fwr_A 394 RFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKG 441 (472)
T ss_dssp SCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTT
T ss_pred CCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCC
Confidence 999999999999999999999999999999999999999999998854
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-33 Score=383.75 Aligned_cols=158 Identities=22% Similarity=0.246 Sum_probs=136.3
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH
Q 000174 294 EAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR 372 (1931)
Q Consensus 294 ~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~ 372 (1931)
..+......+|+++|.++++.++. +++|++++||||||++|++++...+. .+.++||++||++|+.|+++.++
T Consensus 175 ~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~------~g~rvlvl~PtraLa~Q~~~~l~ 248 (1108)
T 3l9o_A 175 VNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK------NKQRVIYTSPIKALSNQKYRELL 248 (1108)
T ss_dssp CSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH------TTCEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh------cCCeEEEEcCcHHHHHHHHHHHH
Confidence 344567778999999999999988 99999999999999999999987764 35689999999999999999999
Q ss_pred HHcCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHH
Q 000174 373 EQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFY 452 (1931)
Q Consensus 373 ~~~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~ 452 (1931)
..++ .+++++|+.... .+++|+|+||++|.+++.++...+.++++|||||||++.+. .+...+..++
T Consensus 249 ~~~~-~VglltGd~~~~-----------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~-~rg~~~e~ii 315 (1108)
T 3l9o_A 249 AEFG-DVGLMTGDITIN-----------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDK-ERGVVWEETI 315 (1108)
T ss_dssp HHTS-SEEEECSSCBCC-----------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSH-HHHHHHHHHH
T ss_pred HHhC-CccEEeCccccC-----------CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhcccc-chHHHHHHHH
Confidence 9888 899999987642 46899999999999999988888999999999999999874 6677777666
Q ss_pred hhcCCCCCcEEEEEeecCCC
Q 000174 453 HTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 453 ~~~~~~~~p~iLgLTATP~~ 472 (1931)
...+. .+++++||||+.+
T Consensus 316 ~~l~~--~~qvl~lSATipn 333 (1108)
T 3l9o_A 316 ILLPD--KVRYVFLSATIPN 333 (1108)
T ss_dssp HHSCT--TSEEEEEECSCSS
T ss_pred HhcCC--CceEEEEcCCCCC
Confidence 65543 4899999999654
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=356.12 Aligned_cols=367 Identities=16% Similarity=0.202 Sum_probs=229.9
Q ss_pred CCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc-
Q 000174 302 EQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT- 375 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~- 375 (1931)
..|+|||.++++++.. +++|++++||+|||++++.++..+.. .+...++|||||+ .|+.||.+++++++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~----~~~~~~~LIv~P~-~l~~qw~~e~~~~~~ 110 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKK----ENELTPSLVICPL-SVLKNWEEELSKFAP 110 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHH----TTCCSSEEEEECS-TTHHHHHHHHHHHCT
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHh----cCCCCCEEEEccH-HHHHHHHHHHHHHCC
Confidence 5799999999998742 78999999999999999988876654 2345679999995 69999999999987
Q ss_pred CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhc
Q 000174 376 GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTT 455 (1931)
Q Consensus 376 ~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~ 455 (1931)
++++.+++|+... ......+|+|+||+.+.+... +....|++||+||||++.+... ...+.+.. .
T Consensus 111 ~~~v~~~~g~~~~---------~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~~--~~~~~l~~-l 175 (500)
T 1z63_A 111 HLRFAVFHEDRSK---------IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQT--KIFKAVKE-L 175 (500)
T ss_dssp TSCEEECSSSTTS---------CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTTS--HHHHHHHT-S
T ss_pred CceEEEEecCchh---------ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHhH--HHHHHHHh-h
Confidence 5788888876532 112567999999999976443 4456799999999999987532 22222221 1
Q ss_pred CCCCCcEEEEEeecCCCCCCCCchhHHHHHHH------------------------------HHHHhcCCeEEEecc-hH
Q 000174 456 SKEKRPSVFGMTASPVNLKGVSSQVDCAIKIC------------------------------NLESKLDSVVCTIKD-RK 504 (1931)
Q Consensus 456 ~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~------------------------------~Le~~l~~~i~t~~~-~~ 504 (1931)
..+++++|||||... +..++...+. .|...+...+..... ..
T Consensus 176 ---~~~~~l~LTaTP~~n----~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~ 248 (500)
T 1z63_A 176 ---KSKYRIALTGTPIEN----KVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDK 248 (500)
T ss_dssp ---CEEEEEEECSSCSTT----CHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCH
T ss_pred ---ccCcEEEEecCCCCC----CHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeeccccc
Confidence 237889999999862 2222221111 122222222221100 00
Q ss_pred HHhhhCCCCceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHH
Q 000174 505 ELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAAN 584 (1931)
Q Consensus 505 ~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~ 584 (1931)
.+...++...+..+.+........+.+ .+..... ...... ....
T Consensus 249 ~~~~~lp~~~~~~v~~~l~~~~~~~y~-------~~~~~~~--------------------------~~~~~~--~~~~- 292 (500)
T 1z63_A 249 AIINDLPDKIETNVYCNLTPEQAAMYK-------AEVENLF--------------------------NNIDSV--TGIK- 292 (500)
T ss_dssp HHHTTSCSEEEEEEEECCCHHHHHHHH-------HHHHHHT--------------------------TTTTTC--CTHH-
T ss_pred chhhcCCCCeEEEEEcCCCHHHHHHHH-------HHHHHHH--------------------------HHHHhh--hccc-
Confidence 111122222222222221111100000 0000000 000000 0000
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhccccccccccccccccc
Q 000174 585 LIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGF 664 (1931)
Q Consensus 585 l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~ 664 (1931)
. ...+...+ ..++.++..
T Consensus 293 --~-~~~~~~~l-----------------------------------~~lr~~~~~------------------------ 310 (500)
T 1z63_A 293 --R-KGMILSTL-----------------------------------LKLKQIVDH------------------------ 310 (500)
T ss_dssp --H-HHHHHHHH-----------------------------------HHHHHHTTC------------------------
T ss_pred --c-hHHHHHHH-----------------------------------HHHHHHhCC------------------------
Confidence 0 00000000 001111100
Q ss_pred ccCCccccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcC
Q 000174 665 VEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAEL 744 (1931)
Q Consensus 665 ~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~ 744 (1931)
..+... .......++|+..|.++|.+.. ..+.|+||||+++.+++.|.+.|...
T Consensus 311 -----p~l~~~--------------------~~~~~~~s~K~~~l~~~l~~~~-~~~~k~lvF~~~~~~~~~l~~~l~~~ 364 (500)
T 1z63_A 311 -----PALLKG--------------------GEQSVRRSGKMIRTMEIIEEAL-DEGDKIAIFTQFVDMGKIIRNIIEKE 364 (500)
T ss_dssp -----THHHHC--------------------SCCCSTTCHHHHHHHHHHHHHH-TTTCCEEEECSCHHHHHHHHHHHHHH
T ss_pred -----HHHhcC--------------------ccchhhcchhHHHHHHHHHHHH-ccCCcEEEEEehHHHHHHHHHHHHHh
Confidence 000000 0001245789999999998862 45789999999999999999999862
Q ss_pred CCCCCceeEEEEccCCCccccHHHHHHHHHHhhcC-Cce-EEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCC
Q 000174 745 PSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDG-RVT-LLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRAR 822 (1931)
Q Consensus 745 ~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G-~~~-vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~ 822 (1931)
.++.+..+|| +++..+|++++++|++| .++ +||||+++++|||+|.|++||+||+|||+..|+||+||++
T Consensus 365 ---~~~~~~~~~g-----~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~ 436 (500)
T 1z63_A 365 ---LNTEVPFLYG-----ELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVY 436 (500)
T ss_dssp ---HTCCCCEEET-----TSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTT
T ss_pred ---hCCCeEEEEC-----CCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHH
Confidence 2678899999 99999999999999988 565 8999999999999999999999999999999999999999
Q ss_pred CCCCc
Q 000174 823 KPGSD 827 (1931)
Q Consensus 823 R~Gs~ 827 (1931)
|.|++
T Consensus 437 R~Gq~ 441 (500)
T 1z63_A 437 RIGQT 441 (500)
T ss_dssp TTTTT
T ss_pred HcCCC
Confidence 99987
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-33 Score=359.96 Aligned_cols=329 Identities=19% Similarity=0.223 Sum_probs=225.1
Q ss_pred CCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc---C
Q 000174 301 EEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT---G 376 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~---~ 376 (1931)
..+||+||.++++.+++ +++|++++||+|||++|++++...+.. .+.++||||||++|+.||.++++++. +
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-----~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~ 185 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-----YEGKILIIVPTTALTTQMADDFVDYRLFSH 185 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH-----CSSEEEEEESSHHHHHHHHHHHHHTTSSCG
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC-----CCCeEEEEECcHHHHHHHHHHHHHhhcCCc
Confidence 56899999999999988 899999999999999999998877653 23589999999999999999998873 3
Q ss_pred CcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcC
Q 000174 377 YVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTS 456 (1931)
Q Consensus 377 l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~ 456 (1931)
..+..++|+..... +.....+|+|+||+.|.. .....+.++++|||||||++... .+..+ +...
T Consensus 186 ~~v~~~~~~~~~~~-------~~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~~-~~~~i----l~~~- 249 (510)
T 2oca_A 186 AMIKKIGGGASKDD-------KYKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATGK-SISSI----ISGL- 249 (510)
T ss_dssp GGEEECGGGCCTTG-------GGCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCHH-HHHHH----GGGC-
T ss_pred cceEEEecCCcccc-------ccccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCcc-cHHHH----HHhc-
Confidence 57888888765322 134678999999998763 23456789999999999999763 33333 2222
Q ss_pred CCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHh-hhCCCCceeEEEeccchhhhHHHHHHHH
Q 000174 457 KEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELE-KHVPMPSEVVVEYDKAASLWSLHEQLKQ 535 (1931)
Q Consensus 457 ~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~-~~~~~p~e~~~~y~~~~~~~~l~~~i~~ 535 (1931)
...+++|+|||||.+... .+..+...++..+......+.+. .++.......+....... ..
T Consensus 250 -~~~~~~l~lSATp~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~----- 311 (510)
T 2oca_A 250 -NNCMFKFGLSGSLRDGKA---------NIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDE---FT----- 311 (510)
T ss_dssp -TTCCEEEEEESCGGGCSS---------CHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHH---HH-----
T ss_pred -ccCcEEEEEEeCCCCCcc---------cHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChH---Hh-----
Confidence 134789999999964221 11233344554443332211111 111111111111110000 00
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 000174 536 MEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTAL 615 (1931)
Q Consensus 536 l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l 615 (1931)
.. ... ..+
T Consensus 312 ---------------------------------------------------~~-------~~~-~~~------------- 319 (510)
T 2oca_A 312 ---------------------------------------------------TK-------LKG-KTY------------- 319 (510)
T ss_dssp ---------------------------------------------------HH-------HTT-CCH-------------
T ss_pred ---------------------------------------------------cc-------ccc-cch-------------
Confidence 00 000 000
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhhhhh
Q 000174 616 QNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGA 695 (1931)
Q Consensus 616 ~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~ 695 (1931)
...+ ..+.
T Consensus 320 --------------~~~~-~~~~--------------------------------------------------------- 327 (510)
T 2oca_A 320 --------------QEEI-KIIT--------------------------------------------------------- 327 (510)
T ss_dssp --------------HHHH-HHHH---------------------------------------------------------
T ss_pred --------------HHHH-HHHh---------------------------------------------------------
Confidence 0000 0000
Q ss_pred cccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHH
Q 000174 696 AVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAK 775 (1931)
Q Consensus 696 ~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~ 775 (1931)
....|...+.+++.........++|||++ +..+..|++.|.+ .+.++..+|| +++..+|++++++
T Consensus 328 -----~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~----~~~~v~~~~g-----~~~~~~r~~i~~~ 392 (510)
T 2oca_A 328 -----GLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKN----EYDKVYYVSG-----EVDTETRNIMKTL 392 (510)
T ss_dssp -----TCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHT----TCSSEEEESS-----STTHHHHHHHHHH
T ss_pred -----ccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHH----cCCCeEEEEC-----CCCHHHHHHHHHH
Confidence 00123334445554443334566777777 8888889999988 3458999999 9999999999999
Q ss_pred hhcCCceEEEEe-cccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 776 FRDGRVTLLVAT-SVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 776 Fr~G~~~vLVaT-dVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
|++|+++||||| +++++|||+|+|++||+||+|+++..|+||+||+||.|+.
T Consensus 393 f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~ 445 (510)
T 2oca_A 393 AENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGS 445 (510)
T ss_dssp HHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCC
T ss_pred HhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCC
Confidence 999999999999 9999999999999999999999999999999999998865
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-33 Score=382.95 Aligned_cols=412 Identities=17% Similarity=0.186 Sum_probs=239.3
Q ss_pred CCCcHHHHHHHHHHhc---cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCc
Q 000174 302 EQARPYQLDVLEQAKK---KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYV 378 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~---~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~ 378 (1931)
.+|+|||.+++.+++. .++|++++||+|||+++++++.+++.. +...++|||||+ .|+.||.+++.++++++
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~----g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~ 226 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS----GAAERVLIIVPE-TLQHQWLVEMLRRFNLR 226 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT----SSCCCEEEECCT-TTHHHHHHHHHHHSCCC
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh----CCCCeEEEEeCH-HHHHHHHHHHHHHhCCC
Confidence 6899999999999887 479999999999999999998877652 445579999999 99999999999999999
Q ss_pred EEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhc-ccccccceeEEEEeCCCcccCCCcH----HHHHHHHHh
Q 000174 379 VGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH-SIIKMEAINLLILDECHHAVKKHPY----SLVMSEFYH 453 (1931)
Q Consensus 379 v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~-~~l~l~~i~lLV~DEaH~~~~~~~~----~~im~~~~~ 453 (1931)
+.+++|+.... ....+...+...+|+|+|++.|...... ..+...+|++||||||||+.+.+.. ...+..+..
T Consensus 227 v~v~~~~~~~~--~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~ 304 (968)
T 3dmq_A 227 FALFDDERYAE--AQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAE 304 (968)
T ss_dssp CEECCHHHHHH--HHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHT
T ss_pred EEEEccchhhh--hhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhh
Confidence 98887754321 1112223345789999999999743221 2345668999999999999864322 334444432
Q ss_pred hcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhhhHHHHHH
Q 000174 454 TTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQL 533 (1931)
Q Consensus 454 ~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i 533 (1931)
..+++|+|||||...+.. + +..+-.+++...+. ....+....
T Consensus 305 -----~~~~~L~LTATPi~n~~~----e----l~sll~~L~p~~~~-------------------------~~~~f~~~~ 346 (968)
T 3dmq_A 305 -----HVPGVLLLTATPEQLGME----S----HFARLRLLDPNRFH-------------------------DFAQFVEEQ 346 (968)
T ss_dssp -----TCSSEEESCSSCSSSCSS----C----THHHHHHHCTTTCS-------------------------STHHHHHHH
T ss_pred -----cCCcEEEEEcCCccCCHH----H----HHHHHHhcCccccC-------------------------CHHHHHHHH
Confidence 237799999999863321 1 11121222211000 000011000
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000174 534 KQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLT 613 (1931)
Q Consensus 534 ~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~ 613 (1931)
... ..+........... ....... ..+...........++.
T Consensus 347 ~~~-~~i~~~~~~l~~~~---------------------~~~~~~~-----------------~~L~~~l~~~~~~~l~~ 387 (968)
T 3dmq_A 347 KNY-CPVADAVAMLLAGN---------------------KLSNDEL-----------------NMLGEMIGEQDIEPLLQ 387 (968)
T ss_dssp HHH-HHHHHHHHTTTTSC---------------------CCCGGGT-----------------TSSTTTTCTTCSSTTGG
T ss_pred HhH-HHHHHHHHHHhccC---------------------CCCHHHH-----------------HHHHHHhcchhhHHHHh
Confidence 000 00000000000000 0000000 00000000000000000
Q ss_pred HhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccC--------
Q 000174 614 ALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSG-------- 685 (1931)
Q Consensus 614 ~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~-------- 685 (1931)
....... . ........+..+.+ ........+.........+....+... .+..
T Consensus 388 ~~~~~~~---~-~~~~~~~~i~~lld--------------~~g~~~~l~r~~r~~i~~~p~r~~~~~-~l~~~~~~~~~~ 448 (968)
T 3dmq_A 388 AANSDSE---D-AQSARQELVSMLMD--------------RHGTSRVLFRNTRNGVKGFPKRELHTI-KLPLPTQYQTAI 448 (968)
T ss_dssp GTCCCSS---C-STTTHHHHHHHHGG--------------GCTTTTTEECCCTTTCCCCCCCCCCEE-EECCCHHHHHHH
T ss_pred cccchhh---h-hHHHHHHHHHHHHH--------------hhCcchhhhhhhhhhhcccChhheEee-ecCCCHHHHHHH
Confidence 0000000 0 00000000000000 000000000000000000000000000 0000
Q ss_pred ---------------------CCchhhhhhh-cccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhc
Q 000174 686 ---------------------GEHVDVIIGA-AVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAE 743 (1931)
Q Consensus 686 ---------------------~e~~~~~i~~-~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~ 743 (1931)
.+.....+.. .......++|...|.++|.. ..+.++||||+++.+++.|++.|..
T Consensus 449 ~~~~~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~---~~~~k~iVF~~~~~~~~~l~~~L~~ 525 (968)
T 3dmq_A 449 KVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS---HRSQKVLVICAKAATALQLEQVLRE 525 (968)
T ss_dssp HHHHHTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH---TSSSCCCEECSSTHHHHHHHHHHHT
T ss_pred HHHhhhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh---CCCCCEEEEeCcHHHHHHHHHHHHH
Confidence 0000000000 11233567899999999987 3578999999999999999999985
Q ss_pred CCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCC--ceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccC
Q 000174 744 LPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGR--VTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRA 821 (1931)
Q Consensus 744 ~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~--~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa 821 (1931)
. .++++..+|| +|++.+|++++++|++|+ ++|||||+++++|||+|+|++||+||+|||+..|+||+||+
T Consensus 526 ~---~g~~~~~lhG-----~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~ 597 (968)
T 3dmq_A 526 R---EGIRAAVFHE-----GMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRL 597 (968)
T ss_dssp T---TCCCEEEECT-----TSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTT
T ss_pred H---cCCcEEEEeC-----CCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhcc
Confidence 2 4789999999 999999999999999998 99999999999999999999999999999999999999999
Q ss_pred CCCCCc
Q 000174 822 RKPGSD 827 (1931)
Q Consensus 822 ~R~Gs~ 827 (1931)
+|.|+.
T Consensus 598 ~R~Gq~ 603 (968)
T 3dmq_A 598 DRIGQA 603 (968)
T ss_dssp SCSSSC
T ss_pred ccCCCC
Confidence 999987
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-32 Score=367.57 Aligned_cols=395 Identities=17% Similarity=0.205 Sum_probs=243.4
Q ss_pred CCCCcHHHHHHHHHHh----c-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000174 301 EEQARPYQLDVLEQAK----K-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT 375 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l----~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~ 375 (1931)
..+|+|||.+++.+++ . +++||+++||+|||++++.++..++... ...+++||||| ..|+.||.++|.+++
T Consensus 234 ~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~---~~~~~~LIV~P-~sll~qW~~E~~~~~ 309 (800)
T 3mwy_W 234 GGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR---RQNGPHIIVVP-LSTMPAWLDTFEKWA 309 (800)
T ss_dssp SSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH---SCCSCEEEECC-TTTHHHHHHHHHHHS
T ss_pred CCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc---CCCCCEEEEEC-chHHHHHHHHHHHHC
Confidence 3589999999999876 3 8899999999999999999887766432 34566999999 688999999999988
Q ss_pred -CCcEEEEeCCCcccccchH-H-------HHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHH
Q 000174 376 -GYVVGHYCGEMGQDFWDAQ-R-------WQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSL 446 (1931)
Q Consensus 376 -~l~v~~~~G~~~~~~~~~~-~-------w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~ 446 (1931)
++++.+++|.......... . ........+|+|+||+.+...... +....|++|||||||++.+... .
T Consensus 310 p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~s--~ 385 (800)
T 3mwy_W 310 PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAES--S 385 (800)
T ss_dssp TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSSS--H
T ss_pred CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCchh--H
Confidence 7888888887542110000 0 001234678999999999865432 4455899999999999986432 1
Q ss_pred HHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHH---------------------------HHHHHHhcCCeEEE
Q 000174 447 VMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIK---------------------------ICNLESKLDSVVCT 499 (1931)
Q Consensus 447 im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~---------------------------l~~Le~~l~~~i~t 499 (1931)
..+.+. ....+++|+|||||.+.+ ..++... +..|...+...+..
T Consensus 386 ~~~~l~----~l~~~~rl~LTgTPiqN~----l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lR 457 (800)
T 3mwy_W 386 LYESLN----SFKVANRMLITGTPLQNN----IKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILR 457 (800)
T ss_dssp HHHHHT----TSEEEEEEEECSCCCSSC----SHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEE
T ss_pred HHHHHH----HhhhccEEEeeCCcCCCC----HHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhh
Confidence 112111 123477899999998632 2222111 12222222222221
Q ss_pred ecchHHHhhhCCCCceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccc
Q 000174 500 IKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTES 579 (1931)
Q Consensus 500 ~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~ 579 (1931)
. ...++...++...+.++.+........+...+.. . . +........
T Consensus 458 R-~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~---~--------~----------------------~~~l~~~~~ 503 (800)
T 3mwy_W 458 R-LKKDVEKSLPSKTERILRVELSDVQTEYYKNILT---K--------N----------------------YSALTAGAK 503 (800)
T ss_dssp C-CGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHH---H--------C----------------------CC-------
T ss_pred h-hHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHH---H--------H----------------------HHHHhhccc
Confidence 1 1122222233333444444333221111111100 0 0 000000000
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccc
Q 000174 580 DGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVD 659 (1931)
Q Consensus 580 ~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~ 659 (1931)
.....+.. .+..+...|.+..+. ... .. ..
T Consensus 504 ~~~~~~l~-------~l~~Lrk~~~hp~l~----------------~~~-~~----~~---------------------- 533 (800)
T 3mwy_W 504 GGHFSLLN-------IMNELKKASNHPYLF----------------DNA-EE----RV---------------------- 533 (800)
T ss_dssp ---CTHHH-------HHHHHHHHHHCGGGS----------------SSH-HH----HH----------------------
T ss_pred cchhhHHH-------HHHHHHHHhcChhhh----------------cch-HH----HH----------------------
Confidence 00000000 111111111110000 000 00 00
Q ss_pred cccccccCCccccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHH
Q 000174 660 SENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPK 739 (1931)
Q Consensus 660 ~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~ 739 (1931)
......... ......... ...+.|+..|.++|..+ ...+.|+|||++.+.+++.|..
T Consensus 534 ---------~~~~~~~~~----------~~~~~~~~l---~~~s~K~~~L~~lL~~~-~~~g~kvLIFsq~~~~ld~L~~ 590 (800)
T 3mwy_W 534 ---------LQKFGDGKM----------TRENVLRGL---IMSSGKMVLLDQLLTRL-KKDGHRVLIFSQMVRMLDILGD 590 (800)
T ss_dssp ---------CCCC----C----------CSHHHHHHH---HHTCHHHHHHHHHHHHH-TTTTCCEEEEESCHHHHHHHHH
T ss_pred ---------HHhcccccc----------cHHHHHHHh---hhcChHHHHHHHHHHHH-hhCCCeEEEEechHHHHHHHHH
Confidence 000000000 000000000 12478999999999987 4567899999999999999999
Q ss_pred HHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCce---EEEEecccccCCCCCCCCEEEEcCCCCCHHHHHH
Q 000174 740 VFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVT---LLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQ 816 (1931)
Q Consensus 740 ~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~---vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQ 816 (1931)
.|.. .++++..++| +++..+|++++++|+++..+ +|++|+++++|||++.|++||+||+|||+..++|
T Consensus 591 ~L~~----~g~~~~~i~G-----~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Q 661 (800)
T 3mwy_W 591 YLSI----KGINFQRLDG-----TVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQ 661 (800)
T ss_dssp HHHH----HTCCCEEEST-----TSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHH
T ss_pred HHHh----CCCCEEEEeC-----CCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHH
Confidence 9987 6899999999 99999999999999986654 9999999999999999999999999999999999
Q ss_pred hhccCCCCCCc
Q 000174 817 SRGRARKPGSD 827 (1931)
Q Consensus 817 r~GRa~R~Gs~ 827 (1931)
|+||++|.|++
T Consensus 662 a~gR~~RiGQ~ 672 (800)
T 3mwy_W 662 AMARAHRIGQK 672 (800)
T ss_dssp HHTTTSCSSCC
T ss_pred HHHHHHhcCCC
Confidence 99999999987
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-31 Score=368.55 Aligned_cols=358 Identities=20% Similarity=0.193 Sum_probs=233.5
Q ss_pred CCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEE
Q 000174 302 EQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVG 380 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~ 380 (1931)
++|+++|.++++.+.+ +++|+++|||||||++|.+++...+. .+.++||++||++|+.||+++++..++ .++
T Consensus 85 f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~------~g~rvL~l~PtkaLa~Q~~~~l~~~~~-~vg 157 (1010)
T 2xgj_A 85 FTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK------NKQRVIYTSPIKALSNQKYRELLAEFG-DVG 157 (1010)
T ss_dssp SCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH------TTCEEEEEESSHHHHHHHHHHHHHHHS-CEE
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc------cCCeEEEECChHHHHHHHHHHHHHHhC-CEE
Confidence 4599999999999988 89999999999999999998887664 247899999999999999999999888 899
Q ss_pred EEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCC
Q 000174 381 HYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKR 460 (1931)
Q Consensus 381 ~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~ 460 (1931)
.++|+.... ...+|+|+||++|.+++.++...+.++++|||||||++.+. .+...+..++...+ ..
T Consensus 158 lltGd~~~~-----------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~-~rg~~~e~il~~l~--~~ 223 (1010)
T 2xgj_A 158 LMTGDITIN-----------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDK-ERGVVWEETIILLP--DK 223 (1010)
T ss_dssp EECSSCEEC-----------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCT-TTHHHHHHHHHHSC--TT
T ss_pred EEeCCCccC-----------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhccc-chhHHHHHHHHhcC--CC
Confidence 999986542 35789999999999999888888999999999999999874 44555555555543 34
Q ss_pred cEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhhhHHHHHHHHHHHHH
Q 000174 461 PSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEVAV 540 (1931)
Q Consensus 461 p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~l~~~~ 540 (1931)
+++++||||+.+ ..+....+ .......+..... ...+.|....+........
T Consensus 224 ~~il~LSATi~n------~~e~a~~l---~~~~~~~~~vi~~-----~~rp~pl~~~~~~~~~~~~-------------- 275 (1010)
T 2xgj_A 224 VRYVFLSATIPN------AMEFAEWI---CKIHSQPCHIVYT-----NFRPTPLQHYLFPAHGDGI-------------- 275 (1010)
T ss_dssp CEEEEEECCCTT------HHHHHHHH---HHHHTSCEEEEEE-----CCCSSCEEEEEEETTSSCC--------------
T ss_pred CeEEEEcCCCCC------HHHHHHHH---HhhcCCCeEEEec-----CCCcccceEEEEecCCcce--------------
Confidence 899999999764 12222222 2222222211100 1112232222221110000
Q ss_pred HHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Q 000174 541 EEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDER 620 (1931)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~ 620 (1931)
+.............+... ...+......
T Consensus 276 ------------------------------~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~--------------- 303 (1010)
T 2xgj_A 276 ------------------------------YLVVDEKSTFREENFQKA-------MASISNQIGD--------------- 303 (1010)
T ss_dssp ------------------------------EEEECTTCCBCHHHHHHH-------HHTCC--------------------
T ss_pred ------------------------------eeeeccccccchHHHHHH-------HHHHhhhhcc---------------
Confidence 000000000000000000 0000000000
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhhhhhcccCC
Q 000174 621 ANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADG 700 (1931)
Q Consensus 621 ~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~ 700 (1931)
... . ....+... .... + ....+
T Consensus 304 -----------~~~----~----~~~~g~~~-------------------~~~k-----------~---------~~~~~ 325 (1010)
T 2xgj_A 304 -----------DPN----S----TDSRGKKG-------------------QTYK-----------G---------GSAKG 325 (1010)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------ccc----c----cccccccc-------------------cccc-----------c---------ccccc
Confidence 000 0 00000000 0000 0 00000
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCC--------------------------------
Q 000174 701 KVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLS-------------------------------- 748 (1931)
Q Consensus 701 ~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~-------------------------------- 748 (1931)
....++..+++.+... ...++||||+++..++.++..|....-..
T Consensus 326 ~~~~~l~~l~~~l~~~---~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~ 402 (1010)
T 2xgj_A 326 DAKGDIYKIVKMIWKK---KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHIL 402 (1010)
T ss_dssp ---CHHHHHHHHHHHH---TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHhc---CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHH
Confidence 0023445566666543 34589999999999999999987631100
Q ss_pred ---CceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEE----cCC----CCCHHHHHHh
Q 000174 749 ---FVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIR----FDL----AKTVLAYIQS 817 (1931)
Q Consensus 749 ---~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~----fD~----p~s~~~yiQr 817 (1931)
...+..+|| +|++.+|+.+++.|++|.++|||||+++++|||+|++++||+ ||. |+++.+|+||
T Consensus 403 ~~l~~gI~~~Hg-----gl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr 477 (1010)
T 2xgj_A 403 PLLRRGIGIHHS-----GLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQM 477 (1010)
T ss_dssp HHHHHTEEEEST-----TSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHH
T ss_pred HHHhCCeeEECC-----CCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHh
Confidence 012788999 999999999999999999999999999999999999999999 999 9999999999
Q ss_pred hccCCCCCC
Q 000174 818 RGRARKPGS 826 (1931)
Q Consensus 818 ~GRa~R~Gs 826 (1931)
+|||||.|.
T Consensus 478 ~GRAGR~G~ 486 (1010)
T 2xgj_A 478 SGRAGRRGL 486 (1010)
T ss_dssp HTTBCCTTT
T ss_pred hhhcccCCC
Confidence 999999996
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-31 Score=350.39 Aligned_cols=400 Identities=15% Similarity=0.150 Sum_probs=243.5
Q ss_pred CCCcHHHHHHHHHHhc----------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhc-CCCcEEEEEeCChhHHHHHHHH
Q 000174 302 EQARPYQLDVLEQAKK----------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQ-NKKMLAVFLVPKVPLVYQQAEV 370 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~----------~n~Il~~~TGsGKTliall~i~~~l~~~~~~-~~~~~vL~LvPT~~Lv~Q~~~~ 370 (1931)
..|+|||.+++.++.. .++|++++||+|||++++.++..++...... +...++|||||+ .|+.||.++
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHH
Confidence 5799999999999752 5689999999999999999988776532111 123569999996 899999999
Q ss_pred HHHHcC--CcEEEEeCCCcccccchH--HHHhh---cCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCc
Q 000174 371 IREQTG--YVVGHYCGEMGQDFWDAQ--RWQRE---FDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHP 443 (1931)
Q Consensus 371 l~~~~~--l~v~~~~G~~~~~~~~~~--~w~~~---~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~ 443 (1931)
+.++++ +.+..++|+.... +... .|... ....+|+|+||+.+.... ..+....|++||+||||++.+...
T Consensus 133 ~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ikn~~~ 209 (644)
T 1z3i_X 133 VGKWLGGRVQPVAIDGGSKDE-IDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNSDN 209 (644)
T ss_dssp HHHHHGGGCCEEEECSSCHHH-HHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTTCH
T ss_pred HHHHcCCCeeEEEEeCCCHHH-HHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecCChhh
Confidence 999875 5566666654221 1111 11111 124789999999998543 345567899999999999987532
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHH--------------------------------------
Q 000174 444 YSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIK-------------------------------------- 485 (1931)
Q Consensus 444 ~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~-------------------------------------- 485 (1931)
...+.+... ..+++++|||||+..+ ..++...
T Consensus 210 --~~~~al~~l----~~~~rl~LTgTPiqN~----l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~ 279 (644)
T 1z3i_X 210 --QTYLALNSM----NAQRRVLISGTPIQND----LLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAA 279 (644)
T ss_dssp --HHHHHHHHH----CCSEEEEECSSCSGGG----GGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHH
T ss_pred --HHHHHHHhc----ccCcEEEEecCcccCC----HHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHH
Confidence 222222211 2368999999998633 1111111
Q ss_pred ----HHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccc
Q 000174 486 ----ICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDA 561 (1931)
Q Consensus 486 ----l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~ 561 (1931)
+..|...+...+.. .....+...++...+.++.+........+.+.+.. .....
T Consensus 280 ~~~~~~~L~~~l~~~~lR-R~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~-------~~~~~-------------- 337 (644)
T 1z3i_X 280 GEQKLQELISIVNRCLIR-RTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLK-------QAKPV-------------- 337 (644)
T ss_dssp HHHHHHHHHHHHHHHEEC-CCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHH-------HHCGG--------------
T ss_pred HHHHHHHHHHHHHHHHHH-hhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHH-------HHHHH--------------
Confidence 11122222211111 11223334444444555554443322222211110 00000
Q ss_pred hhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHh
Q 000174 562 GAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLL 641 (1931)
Q Consensus 562 ~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l 641 (1931)
...... . ..... ...+..+.+.|.+.... .....
T Consensus 338 ---------~~~~~g-~--~~~~~-------l~~l~~Lrk~c~hp~l~------------------------~~~~~--- 371 (644)
T 1z3i_X 338 ---------ESLQTG-K--ISVSS-------LSSITSLKKLCNHPALI------------------------YEKCL--- 371 (644)
T ss_dssp ---------GSSCTT-C--CCHHH-------HHHHHHHHHHHHCTHHH------------------------HHHHH---
T ss_pred ---------HHHhcC-c--cchhH-------HHHHHHHHHHhCCHHHH------------------------HHHHh---
Confidence 000000 0 00000 01111122222211100 00000
Q ss_pred hhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCC
Q 000174 642 QCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTED 721 (1931)
Q Consensus 642 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~ 721 (1931)
.+.. ... .....+ +. . .+ ........+.|+..|..+|.......+
T Consensus 372 -----~~~~----------~~~---~~~~~~-----~~-~-~~----------~~~~~~~~s~K~~~l~~ll~~~~~~~~ 416 (644)
T 1z3i_X 372 -----TGEE----------GFD---GALDLF-----PQ-N-YS----------TKAVEPQLSGKMLVLDYILAMTRTTTS 416 (644)
T ss_dssp -----HTCT----------TCT---TGGGTS-----CS-S-CC----------SSSCCGGGSHHHHHHHHHHHHHHHHCC
T ss_pred -----cccc----------hhh---hHHhhc-----cc-c-cc----------ccccCcccChHHHHHHHHHHHHhhcCC
Confidence 0000 000 000000 00 0 00 000012347899888888877644457
Q ss_pred ceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCce---EEEEecccccCCCCCC
Q 000174 722 FRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVT---LLVATSVAEEGLDIRQ 798 (1931)
Q Consensus 722 ~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~---vLVaTdVaeeGlDip~ 798 (1931)
.|+|||++++.+++.|..+|.. .++.+..+|| +++..+|++++++|++|+.. +||+|+++++|||++.
T Consensus 417 ~k~lIFs~~~~~~~~l~~~l~~----~g~~~~~l~G-----~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~ 487 (644)
T 1z3i_X 417 DKVVLVSNYTQTLDLFEKLCRN----RRYLYVRLDG-----TMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIG 487 (644)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH----HTCCEEEECS-----SCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTT
T ss_pred CEEEEEEccHHHHHHHHHHHHH----CCCCEEEEeC-----CCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCccccc
Confidence 8999999999999999999987 6789999999 99999999999999998764 8999999999999999
Q ss_pred CCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 799 CNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 799 ~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
|++||+||+|||+..|+|++||++|.|++
T Consensus 488 a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~ 516 (644)
T 1z3i_X 488 ANRLVMFDPDWNPANDEQAMARVWRDGQK 516 (644)
T ss_dssp EEEEEECSCCSSHHHHHHHHTTSSSTTCC
T ss_pred CCEEEEECCCCCccHHHHHHHhhhhcCCC
Confidence 99999999999999999999999999987
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-31 Score=359.15 Aligned_cols=339 Identities=19% Similarity=0.221 Sum_probs=239.8
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHH-Hhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQ-AKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP 359 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~-~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP 359 (1931)
++.+.+..+...+.+...++..|+++|.++++. +.+ +|+|+++|||||||++|.+++.+.+.. .+.++++++|
T Consensus 9 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-----~~~~il~i~P 83 (715)
T 2va8_A 9 PIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK-----NGGKAIYVTP 83 (715)
T ss_dssp BGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH-----SCSEEEEECS
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH-----CCCeEEEEeC
Confidence 445555444455778889999999999999999 445 899999999999999999998776542 2468999999
Q ss_pred ChhHHHHHHHHHHHH--cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCc
Q 000174 360 KVPLVYQQAEVIREQ--TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHH 437 (1931)
Q Consensus 360 T~~Lv~Q~~~~l~~~--~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~ 437 (1931)
+++|+.|+++.++.+ ++++++.++|+..... . ....++|+|+||++|...+.++...+.++++||+||||+
T Consensus 84 ~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~----~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~ 156 (715)
T 2va8_A 84 LRALTNEKYLTFKDWELIGFKVAMTSGDYDTDD----A---WLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHY 156 (715)
T ss_dssp CHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCC----G---GGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGG
T ss_pred cHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCch----h---hcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhh
Confidence 999999999999643 4789999999765432 1 124789999999999999888766789999999999999
Q ss_pred ccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeE
Q 000174 438 AVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVV 517 (1931)
Q Consensus 438 ~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~ 517 (1931)
+.+. .+...+..+....+ .+++++||||+.+ ...+...++..++... .-+.|....
T Consensus 157 l~~~-~~~~~l~~i~~~~~---~~~ii~lSATl~n-------------~~~~~~~l~~~~~~~~-------~r~~~l~~~ 212 (715)
T 2va8_A 157 LNDP-ERGPVVESVTIRAK---RRNLLALSATISN-------------YKQIAKWLGAEPVATN-------WRPVPLIEG 212 (715)
T ss_dssp GGCT-TTHHHHHHHHHHHH---TSEEEEEESCCTT-------------HHHHHHHHTCEEEECC-------CCSSCEEEE
T ss_pred cCCc-ccchHHHHHHHhcc---cCcEEEEcCCCCC-------------HHHHHHHhCCCccCCC-------CCCCCceEE
Confidence 8753 45555555554443 4899999999863 1234445555443321 112222221
Q ss_pred EEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHH
Q 000174 518 VEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALG 597 (1931)
Q Consensus 518 ~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~ 597 (1931)
+.+..... ....+ .+
T Consensus 213 ~~~~~~~~-------------------------~~~~~--------------~~-------------------------- 227 (715)
T 2va8_A 213 VIYPERKK-------------------------KEYNV--------------IF-------------------------- 227 (715)
T ss_dssp EEEECSST-------------------------TEEEE--------------EE--------------------------
T ss_pred EEecCCcc-------------------------cceee--------------ec--------------------------
Confidence 21111000 00000 00
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccc
Q 000174 598 ELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGEL 677 (1931)
Q Consensus 598 ~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l 677 (1931)
.+ .....
T Consensus 228 ------------------------------------------------------------~~------------~~~~~- 234 (715)
T 2va8_A 228 ------------------------------------------------------------KD------------NTTKK- 234 (715)
T ss_dssp ------------------------------------------------------------TT------------SCEEE-
T ss_pred ------------------------------------------------------------Cc------------chhhh-
Confidence 00 00000
Q ss_pred cccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCC---C------
Q 000174 678 LDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSL---S------ 748 (1931)
Q Consensus 678 ~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l---~------ 748 (1931)
+. ....+...+.+.+ ..+.++||||+++..+..++..|.+.... .
T Consensus 235 -------------------~~--~~~~~~~~~~~~~-----~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~ 288 (715)
T 2va8_A 235 -------------------VH--GDDAIIAYTLDSL-----SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSE 288 (715)
T ss_dssp -------------------EE--SSSHHHHHHHHHH-----TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHH
T ss_pred -------------------cc--cchHHHHHHHHHH-----hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHH
Confidence 00 0123333444443 24679999999999999999999863110 0
Q ss_pred -----------------------CceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEE-
Q 000174 749 -----------------------FVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIR- 804 (1931)
Q Consensus 749 -----------------------~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~- 804 (1931)
...+..+|| +++..+|..+++.|++|.++|||||+++++|||+|++++||+
T Consensus 289 ~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~-----~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~ 363 (715)
T 2va8_A 289 ILKQLDDIEEGGSDEKELLKSLISKGVAYHHA-----GLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGD 363 (715)
T ss_dssp HHHHHHTCCSSCHHHHHHHHHHHTTTEEEECT-----TSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECC
T ss_pred HHHHHHHhhhccccccHHHHHHHhcCEEEECC-----CCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeC
Confidence 124788999 999999999999999999999999999999999999999999
Q ss_pred ---cC-------CCCCHHHHHHhhccCCCCC
Q 000174 805 ---FD-------LAKTVLAYIQSRGRARKPG 825 (1931)
Q Consensus 805 ---fD-------~p~s~~~yiQr~GRa~R~G 825 (1931)
|| .|.+..+|+||+|||||.|
T Consensus 364 ~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g 394 (715)
T 2va8_A 364 IYRFNKKIAGYYDEIPIMEYKQMSGRAGRPG 394 (715)
T ss_dssp C--------------CHHHHHHHHTTBCCTT
T ss_pred CeeccccCCCCCCcCCHHHHHHHhhhcCCCC
Confidence 99 8999999999999999988
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.2e-31 Score=360.07 Aligned_cols=323 Identities=19% Similarity=0.219 Sum_probs=235.8
Q ss_pred cchhhhhcCCCCCCcHHHHHHHHH-Hhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHH
Q 000174 291 KKSEAKEKMPEEQARPYQLDVLEQ-AKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQA 368 (1931)
Q Consensus 291 ~~~~~l~~~~~~~~~~~Q~eai~~-~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~ 368 (1931)
...+.+...++..|+++|.++++. +.. +|+|+++|||||||++|.+++.+.+... +.+++|++|+++|+.|++
T Consensus 11 ~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-----~~~~l~i~P~raLa~q~~ 85 (720)
T 2zj8_A 11 RIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-----GGKAVYIVPLKALAEEKF 85 (720)
T ss_dssp HHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-----CSEEEEECSSGGGHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-----CCEEEEEcCcHHHHHHHH
Confidence 344778888999999999999998 555 8999999999999999999887665431 468999999999999999
Q ss_pred HHHHHH--cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHH
Q 000174 369 EVIREQ--TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSL 446 (1931)
Q Consensus 369 ~~l~~~--~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~ 446 (1931)
+.++.+ ++++++.++|+...+. . ....++|+|+||++|...+.+....+.++++||+||||++... .+..
T Consensus 86 ~~~~~l~~~g~~v~~~~G~~~~~~----~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~-~r~~ 157 (720)
T 2zj8_A 86 QEFQDWEKIGLRVAMATGDYDSKD----E---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSR-DRGA 157 (720)
T ss_dssp HHTGGGGGGTCCEEEECSCSSCCC----G---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCT-TTHH
T ss_pred HHHHHHHhcCCEEEEecCCCCccc----c---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCC-cccH
Confidence 999753 4889999999765432 1 1357899999999999988887777899999999999999763 4445
Q ss_pred HHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhh
Q 000174 447 VMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASL 526 (1931)
Q Consensus 447 im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~ 526 (1931)
.+..++...+. .+++++||||+.+ ...+...++...+... ..+.|....+.+.....
T Consensus 158 ~~~~ll~~l~~--~~~ii~lSATl~n-------------~~~~~~~l~~~~~~~~-------~rp~~l~~~~~~~~~~~- 214 (720)
T 2zj8_A 158 TLEVILAHMLG--KAQIIGLSATIGN-------------PEELAEWLNAELIVSD-------WRPVKLRRGVFYQGFVT- 214 (720)
T ss_dssp HHHHHHHHHBT--TBEEEEEECCCSC-------------HHHHHHHTTEEEEECC-------CCSSEEEEEEEETTEEE-
T ss_pred HHHHHHHHhhc--CCeEEEEcCCcCC-------------HHHHHHHhCCcccCCC-------CCCCcceEEEEeCCeee-
Confidence 55555554442 5899999999864 1234444553332211 11111111111100000
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHH
Q 000174 527 WSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYK 606 (1931)
Q Consensus 527 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~ 606 (1931)
+ .
T Consensus 215 ----------------------------~------------------~-------------------------------- 216 (720)
T 2zj8_A 215 ----------------------------W------------------E-------------------------------- 216 (720)
T ss_dssp ----------------------------E------------------T--------------------------------
T ss_pred ----------------------------c------------------c--------------------------------
Confidence 0 0
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCC
Q 000174 607 VAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGG 686 (1931)
Q Consensus 607 ~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~ 686 (1931)
+...
T Consensus 217 -------------------------------------------------------------------~~~~--------- 220 (720)
T 2zj8_A 217 -------------------------------------------------------------------DGSI--------- 220 (720)
T ss_dssp -------------------------------------------------------------------TSCE---------
T ss_pred -------------------------------------------------------------------ccch---------
Confidence 0000
Q ss_pred CchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCC-C----------------C--
Q 000174 687 EHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELP-S----------------L-- 747 (1931)
Q Consensus 687 e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~-~----------------l-- 747 (1931)
.....+...+.+.+. .+.++||||+++..+..++..|.+.. . +
T Consensus 221 -------------~~~~~~~~~~~~~~~-----~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~ 282 (720)
T 2zj8_A 221 -------------DRFSSWEELVYDAIR-----KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEE 282 (720)
T ss_dssp -------------EECSSTTHHHHHHHH-----TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCS
T ss_pred -------------hhhhHHHHHHHHHHh-----CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhc
Confidence 000112223333332 35789999999999999998886420 0 0
Q ss_pred ----------CCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEE----cC----CCC
Q 000174 748 ----------SFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIR----FD----LAK 809 (1931)
Q Consensus 748 ----------~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~----fD----~p~ 809 (1931)
-...+..+|| +++..+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.
T Consensus 283 ~~~~~~l~~~~~~~v~~~h~-----~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~ 357 (720)
T 2zj8_A 283 NPTNEKLAKAIRGGVAFHHA-----GLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERI 357 (720)
T ss_dssp CHHHHHHHHHHTTTEEEECT-----TSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEEC
T ss_pred ccchHHHHHHHhcCeeeecC-----CCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccC
Confidence 0124888999 999999999999999999999999999999999999999998 88 699
Q ss_pred CHHHHHHhhccCCCCCC
Q 000174 810 TVLAYIQSRGRARKPGS 826 (1931)
Q Consensus 810 s~~~yiQr~GRa~R~Gs 826 (1931)
++.+|+||+|||||.|.
T Consensus 358 s~~~~~Qr~GRaGR~g~ 374 (720)
T 2zj8_A 358 PIIEVHQMLGRAGRPKY 374 (720)
T ss_dssp CHHHHHHHHTTBCCTTT
T ss_pred CHHHHHHHHhhcCCCCC
Confidence 99999999999999883
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-31 Score=371.18 Aligned_cols=163 Identities=15% Similarity=0.152 Sum_probs=127.9
Q ss_pred CCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc--
Q 000174 299 MPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT-- 375 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~-- 375 (1931)
.++ +|+++|.++++.+++ +|+|++++||||||++|+.++.+.+. .+.++|||+||++|+.|++++++.+.
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~------~~~~~Lil~PtreLa~Q~~~~l~~l~~~ 147 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR------KGKKSALVFPTVTLVKQTLERLQKLADE 147 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT------TTCCEEEEESSHHHHHHHHHHHHTTSCT
T ss_pred cCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh------cCCeEEEEechHHHHHHHHHHHHHhhCC
Confidence 454 799999999999998 89999999999999988888776653 35679999999999999999999953
Q ss_pred CCcEEEEeCCCcccccchHHHHhhcCC-ccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCC----------CcH
Q 000174 376 GYVVGHYCGEMGQDFWDAQRWQREFDT-KQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKK----------HPY 444 (1931)
Q Consensus 376 ~l~v~~~~G~~~~~~~~~~~w~~~~~~-~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~----------~~~ 444 (1931)
++++..++|+.....+ ...|.....+ ++|+|+||++|.+++.. +.+.++++|||||||++... .+|
T Consensus 148 ~i~v~~l~Gg~~~~er-~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf 224 (1104)
T 4ddu_A 148 KVKIFGFYSSMKKEEK-EKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGI 224 (1104)
T ss_dssp TSCEEEECTTCCTTHH-HHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSC
T ss_pred CCeEEEEeCCCCHHHH-HHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhcCC
Confidence 6799999999875432 3344555454 99999999999988875 67889999999999987652 233
Q ss_pred HHH-HHHHHhhcC---------CCCCcEEEEEeecCC
Q 000174 445 SLV-MSEFYHTTS---------KEKRPSVFGMTASPV 471 (1931)
Q Consensus 445 ~~i-m~~~~~~~~---------~~~~p~iLgLTATP~ 471 (1931)
... +..++...+ .....++++|||||.
T Consensus 225 ~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~ 261 (1104)
T 4ddu_A 225 PEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAK 261 (1104)
T ss_dssp CHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSC
T ss_pred CHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCC
Confidence 333 444444332 113479999999964
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-31 Score=356.70 Aligned_cols=323 Identities=19% Similarity=0.227 Sum_probs=230.2
Q ss_pred hhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHH
Q 000174 293 SEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVI 371 (1931)
Q Consensus 293 ~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l 371 (1931)
.+.++..++.+|+++|.++++.+++ +|+|+++|||||||++|.+++.+.+.. +.++++++|+++|+.|+++.+
T Consensus 15 ~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~------~~~~l~i~P~r~La~q~~~~~ 88 (702)
T 2p6r_A 15 VGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK------GGKSLYVVPLRALAGEKYESF 88 (702)
T ss_dssp HHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT------TCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh------CCcEEEEeCcHHHHHHHHHHH
Confidence 3677788999999999999999887 999999999999999999998876542 457999999999999999999
Q ss_pred HHH--cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHH
Q 000174 372 REQ--TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMS 449 (1931)
Q Consensus 372 ~~~--~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~ 449 (1931)
+.+ +|++++.++|+..... +....++|+|+||++|...+.++...+.++++||+||||++.+. .+...+.
T Consensus 89 ~~~~~~g~~v~~~~G~~~~~~-------~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~-~r~~~~~ 160 (702)
T 2p6r_A 89 KKWEKIGLRIGISTGDYESRD-------EHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSE-KRGATLE 160 (702)
T ss_dssp TTTTTTTCCEEEECSSCBCCS-------SCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCT-TTHHHHH
T ss_pred HHHHhcCCEEEEEeCCCCcch-------hhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCC-CcccHHH
Confidence 653 3789999999865432 12357899999999999999887666899999999999998763 2333333
Q ss_pred HHHhhcC-CCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhhhH
Q 000174 450 EFYHTTS-KEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWS 528 (1931)
Q Consensus 450 ~~~~~~~-~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~ 528 (1931)
.+..... ....+++++||||+.+ ...+...++..++... ..+.|....+.+.....
T Consensus 161 ~ll~~l~~~~~~~~ii~lSATl~n-------------~~~~~~~l~~~~~~~~-------~r~~~l~~~~~~~~~~~--- 217 (702)
T 2p6r_A 161 ILVTKMRRMNKALRVIGLSATAPN-------------VTEIAEWLDADYYVSD-------WRPVPLVEGVLCEGTLE--- 217 (702)
T ss_dssp HHHHHHHHHCTTCEEEEEECCCTT-------------HHHHHHHTTCEEEECC-------CCSSCEEEEEECSSEEE---
T ss_pred HHHHHHHhcCcCceEEEECCCcCC-------------HHHHHHHhCCCcccCC-------CCCccceEEEeeCCeee---
Confidence 3322221 1234899999999863 2234445555443321 11222221111110000
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000174 529 LHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVA 608 (1931)
Q Consensus 529 l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~ 608 (1931)
+ ...
T Consensus 218 --------------------------~------------------~~~-------------------------------- 221 (702)
T 2p6r_A 218 --------------------------L------------------FDG-------------------------------- 221 (702)
T ss_dssp --------------------------E------------------EET--------------------------------
T ss_pred --------------------------c------------------cCc--------------------------------
Confidence 0 000
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCc
Q 000174 609 QSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEH 688 (1931)
Q Consensus 609 ~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~ 688 (1931)
.....
T Consensus 222 ----------------------------------------------------------------~~~~~----------- 226 (702)
T 2p6r_A 222 ----------------------------------------------------------------AFSTS----------- 226 (702)
T ss_dssp ----------------------------------------------------------------TEEEE-----------
T ss_pred ----------------------------------------------------------------chhhh-----------
Confidence 00000
Q ss_pred hhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcC-CC-C--C----------------
Q 000174 689 VDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAEL-PS-L--S---------------- 748 (1931)
Q Consensus 689 ~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~-~~-l--~---------------- 748 (1931)
..-.+...+.+.+. .+.++||||+++..+..++..|... +. + .
T Consensus 227 ------------~~~~~~~~~~~~~~-----~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~ 289 (702)
T 2p6r_A 227 ------------RRVKFEELVEECVA-----ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSR 289 (702)
T ss_dssp ------------EECCHHHHHHHHHH-----TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHH
T ss_pred ------------hhhhHHHHHHHHHh-----cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccH
Confidence 00002223333332 3578999999999999999888642 00 0 0
Q ss_pred ------CceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEE----cC---CCCCHHHHH
Q 000174 749 ------FVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIR----FD---LAKTVLAYI 815 (1931)
Q Consensus 749 ------~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~----fD---~p~s~~~yi 815 (1931)
...+..+|| +++..+|..+++.|++|+++|||||+++++|||+|++++||+ || .|.+..+|+
T Consensus 290 ~l~~~~~~~v~~~h~-----~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~ 364 (702)
T 2p6r_A 290 KLAECVRKGAAFHHA-----GLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYK 364 (702)
T ss_dssp HHHHHHHTTCCEECT-----TSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHH
T ss_pred HHHHHHhcCeEEecC-----CCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHH
Confidence 134788999 999999999999999999999999999999999999999999 87 799999999
Q ss_pred HhhccCCCCC
Q 000174 816 QSRGRARKPG 825 (1931)
Q Consensus 816 Qr~GRa~R~G 825 (1931)
||+|||||.|
T Consensus 365 Qr~GRaGR~g 374 (702)
T 2p6r_A 365 QMAGRAGRPG 374 (702)
T ss_dssp HHHTTBSCTT
T ss_pred HHhhhcCCCC
Confidence 9999999998
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=356.31 Aligned_cols=310 Identities=19% Similarity=0.225 Sum_probs=216.0
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHhc-------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHH
Q 000174 294 EAKEKMPEEQARPYQLDVLEQAKK-------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQ 366 (1931)
Q Consensus 294 ~~l~~~~~~~~~~~Q~eai~~~l~-------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q 366 (1931)
.-++.+++ +||++|.++++.+++ .|+|++++||||||++|++++...+.. +.+++||+||++|+.|
T Consensus 360 ~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~------g~qvlvlaPtr~La~Q 432 (780)
T 1gm5_A 360 EFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA------GFQTAFMVPTSILAIQ 432 (780)
T ss_dssp HHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH------TSCEEEECSCHHHHHH
T ss_pred HHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc------CCeEEEEeCcHHHHHH
Confidence 34566787 999999999999876 389999999999999999999877653 4679999999999999
Q ss_pred HHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcC-CccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCC
Q 000174 367 QAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFD-TKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKH 442 (1931)
Q Consensus 367 ~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~-~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~ 442 (1931)
|++.+++++ ++++..++|+..... +...|..... .++|+|+||+.|.+ .+.+.++++||+||||++...
T Consensus 433 ~~~~l~~~~~~~gi~v~~l~G~~~~~~-r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~- 505 (780)
T 1gm5_A 433 HYRRTVESFSKFNIHVALLIGATTPSE-KEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVK- 505 (780)
T ss_dssp HHHHHHHHHTCSSCCEEECCSSSCHHH-HHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC----
T ss_pred HHHHHHHHhhhcCceEEEEeCCCCHHH-HHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHH-
Confidence 999999976 689999999876433 2334555444 59999999998853 367889999999999998432
Q ss_pred cHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEecc
Q 000174 443 PYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDK 522 (1931)
Q Consensus 443 ~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~ 522 (1931)
. +. ........+++++|||||.. ....+...-+..+..... + .....|... .+
T Consensus 506 ---q--r~--~l~~~~~~~~vL~mSATp~p------------~tl~~~~~g~~~~s~i~~---~-p~~r~~i~~--~~-- 558 (780)
T 1gm5_A 506 ---Q--RE--ALMNKGKMVDTLVMSATPIP------------RSMALAFYGDLDVTVIDE---M-PPGRKEVQT--ML-- 558 (780)
T ss_dssp -------C--CCCSSSSCCCEEEEESSCCC------------HHHHHHHTCCSSCEEECC---C-CSSCCCCEE--CC--
T ss_pred ---H--HH--HHHHhCCCCCEEEEeCCCCH------------HHHHHHHhCCcceeeeec---c-CCCCcceEE--EE--
Confidence 1 11 11112235899999999974 000010000000000000 0 000000000 00
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHH
Q 000174 523 AASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQW 602 (1931)
Q Consensus 523 ~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~ 602 (1931)
T Consensus 559 -------------------------------------------------------------------------------- 558 (780)
T 1gm5_A 559 -------------------------------------------------------------------------------- 558 (780)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccccccccc
Q 000174 603 CAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHV 682 (1931)
Q Consensus 603 ~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~ 682 (1931)
T Consensus 559 -------------------------------------------------------------------------------- 558 (780)
T 1gm5_A 559 -------------------------------------------------------------------------------- 558 (780)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeeh--------hHHHHHHHHHhc-CCCCCCceeE
Q 000174 683 VSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERV--------VAALVLPKVFAE-LPSLSFVKSA 753 (1931)
Q Consensus 683 ~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r--------~ta~~L~~~L~~-~~~l~~~~~~ 753 (1931)
....+...+++.+.+. ...+.+++|||+.+ ..+..+++.|.. . ++++++.
T Consensus 559 ------------------~~~~~~~~l~~~i~~~-l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~--~~~~~v~ 617 (780)
T 1gm5_A 559 ------------------VPMDRVNEVYEFVRQE-VMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEV--FPEFKLG 617 (780)
T ss_dssp ------------------CCSSTHHHHHHHHHHH-TTTSCCBCCBCCCC--------CHHHHHHHSGGGSC--C---CBC
T ss_pred ------------------eccchHHHHHHHHHHH-HhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhh--cCCCcEE
Confidence 0001112222333222 12356778888754 457778888876 3 2468899
Q ss_pred EEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCC-CHHHHHHhhccCCCCCCcEEE
Q 000174 754 SLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAK-TVLAYIQSRGRARKPGSDYIL 830 (1931)
Q Consensus 754 ~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~-s~~~yiQr~GRa~R~Gs~~iv 830 (1931)
.+|| +|++.+|++++++|++|+++|||||+|+++|||+|+|++||+||+|. +...|.||+||+||.|..+..
T Consensus 618 ~lHG-----~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ 690 (780)
T 1gm5_A 618 LMHG-----RLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYC 690 (780)
T ss_dssp CCCS-----SSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEE
T ss_pred EEeC-----CCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEE
Confidence 9999 99999999999999999999999999999999999999999999996 789999999999998866333
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-31 Score=350.12 Aligned_cols=352 Identities=16% Similarity=0.228 Sum_probs=204.4
Q ss_pred CCCcHHHHHHHHHHhc------cCEEEEeCCCchHHHHHHHHHHHHHHHhh---hcCCCcEEEEEeCChhHHHHHH-HHH
Q 000174 302 EQARPYQLDVLEQAKK------KNTIAFLETGAGKTLIAVLLIRSICNDLQ---RQNKKMLAVFLVPKVPLVYQQA-EVI 371 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~------~n~Il~~~TGsGKTliall~i~~~l~~~~---~~~~~~~vL~LvPT~~Lv~Q~~-~~l 371 (1931)
..||+||.++++.+++ +++|++++||||||++++.++..++.... .....+++||||||++|+.||. +.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 5899999999999874 56899999999999998888776655210 0014678999999999999999 777
Q ss_pred HHHcCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhc----ccccccceeEEEEeCCCcccCC--CcHH
Q 000174 372 REQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH----SIIKMEAINLLILDECHHAVKK--HPYS 445 (1931)
Q Consensus 372 ~~~~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~----~~l~l~~i~lLV~DEaH~~~~~--~~~~ 445 (1931)
+.+ +..+..+.++.. ..+.+|+|+||++|.+.+.. ..+....+++||+||||++... ..|.
T Consensus 257 ~~~-~~~~~~~~~~~~------------~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~ 323 (590)
T 3h1t_A 257 TPF-GDARHKIEGGKV------------VKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWR 323 (590)
T ss_dssp TTT-CSSEEECCC--C------------CSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------CH
T ss_pred Hhc-chhhhhhhccCC------------CCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHHH
Confidence 754 445555443321 24679999999999887642 2356678999999999999863 3455
Q ss_pred HHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEE-Eeccch
Q 000174 446 LVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVV-EYDKAA 524 (1931)
Q Consensus 446 ~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~-~y~~~~ 524 (1931)
.++..+- .+++|+|||||..... ..+...++..++.+...+.+......|..... ......
T Consensus 324 ~il~~~~-------~~~~l~lTATP~~~~~-----------~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~ 385 (590)
T 3h1t_A 324 EILEYFE-------PAFQIGMTATPLREDN-----------RDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDA 385 (590)
T ss_dssp HHHHHST-------TSEEEEEESSCSCTTT-----------HHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC
T ss_pred HHHHhCC-------cceEEEeccccccccc-----------hhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeec
Confidence 5554321 2679999999986432 13445566666666555555544444433221 111100
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHH
Q 000174 525 SLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCA 604 (1931)
Q Consensus 525 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a 604 (1931)
....... ...... ...+....+....
T Consensus 386 ~~~~~~~------~~~~~~------------------------------------------~~~~~~~~~~~~~------ 411 (590)
T 3h1t_A 386 AGWRPSK------GDVDRF------------------------------------------GREIPDGEYQTKD------ 411 (590)
T ss_dssp -----------------------------------------------------------------------CCS------
T ss_pred ccccccc------cccccc------------------------------------------ccccccccCCHHH------
Confidence 0000000 000000 0000000000000
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccccccccccc
Q 000174 605 YKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVS 684 (1931)
Q Consensus 605 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s 684 (1931)
+...+.. ..
T Consensus 412 ------------------------~~~~~~~--~~--------------------------------------------- 420 (590)
T 3h1t_A 412 ------------------------FERVIAL--KA--------------------------------------------- 420 (590)
T ss_dssp ------------------------HHHHHHH--HH---------------------------------------------
T ss_pred ------------------------hhhHhcC--hH---------------------------------------------
Confidence 0000000 00
Q ss_pred CCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCC----CCCCceeEEEEccCC
Q 000174 685 GGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELP----SLSFVKSASLIGHNN 760 (1931)
Q Consensus 685 ~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~----~l~~~~~~~l~G~~~ 760 (1931)
........|.+.+... ....|+||||+++.+|+.+++.|.+.. ....-.+..+||
T Consensus 421 ----------------r~~~i~~~l~~~l~~~--~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g--- 479 (590)
T 3h1t_A 421 ----------------RTDAFAKHLTDFMKRT--DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTS--- 479 (590)
T ss_dssp ----------------THHHHHHHHHHHHHHH--CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSS---
T ss_pred ----------------HHHHHHHHHHHHHHhc--CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeC---
Confidence 0000111233333332 346799999999999999999997631 001123677888
Q ss_pred CccccHHHHHHHHHHhhcCCce---EEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCC----cEEEEEe
Q 000174 761 SQEMRTFQMQETIAKFRDGRVT---LLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGS----DYILMIE 833 (1931)
Q Consensus 761 ~~~~~~~~R~~~l~~Fr~G~~~---vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs----~~ivlv~ 833 (1931)
.++. +|++++++|++|+.+ |||||+++++|||+|+|++||+|++|+++..|+||+||++|.+. .+.+++.
T Consensus 480 --~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D 556 (590)
T 3h1t_A 480 --EEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIID 556 (590)
T ss_dssp --TTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEE
T ss_pred --CChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEe
Confidence 6653 799999999998876 89999999999999999999999999999999999999999653 4445544
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-30 Score=349.76 Aligned_cols=151 Identities=19% Similarity=0.249 Sum_probs=125.7
Q ss_pred CCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc-CCcE
Q 000174 302 EQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT-GYVV 379 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~-~l~v 379 (1931)
++|+++|.++++.+++ +++|++++||+|||++|++++...+. .+.++||++|+++|+.||++++++.+ ++++
T Consensus 38 f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~------~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v 111 (997)
T 4a4z_A 38 FELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR------NMTKTIYTSPIKALSNQKFRDFKETFDDVNI 111 (997)
T ss_dssp SCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH------TTCEEEEEESCGGGHHHHHHHHHTTC--CCE
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh------cCCeEEEEeCCHHHHHHHHHHHHHHcCCCeE
Confidence 5699999999999998 89999999999999999998877654 35689999999999999999999976 7899
Q ss_pred EEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCC
Q 000174 380 GHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEK 459 (1931)
Q Consensus 380 ~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~ 459 (1931)
+.++|+.... ...+|+|+||++|.+++.++...+.++++|||||||++.+. .+...+..++...+ .
T Consensus 112 ~~l~G~~~~~-----------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~-~~g~~~e~ii~~l~--~ 177 (997)
T 4a4z_A 112 GLITGDVQIN-----------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQ-DRGVVWEEVIIMLP--Q 177 (997)
T ss_dssp EEECSSCEEC-----------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTT-CTTCCHHHHHHHSC--T
T ss_pred EEEeCCCccC-----------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECccccccc-chHHHHHHHHHhcc--c
Confidence 9999986532 45799999999999999888888899999999999998763 33333444444333 2
Q ss_pred CcEEEEEeecCCC
Q 000174 460 RPSVFGMTASPVN 472 (1931)
Q Consensus 460 ~p~iLgLTATP~~ 472 (1931)
.+++++|||||.+
T Consensus 178 ~v~iIlLSAT~~n 190 (997)
T 4a4z_A 178 HVKFILLSATVPN 190 (997)
T ss_dssp TCEEEEEECCCTT
T ss_pred CCCEEEEcCCCCC
Confidence 4899999999864
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-30 Score=334.62 Aligned_cols=367 Identities=17% Similarity=0.146 Sum_probs=233.1
Q ss_pred cCCCCCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH---H
Q 000174 298 KMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE---Q 374 (1931)
Q Consensus 298 ~~~~~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~---~ 374 (1931)
.+|+ .|+++|..+++.+++++ |+.++||+|||++|++|+..... .+..++||+||++||.|.++.+.. +
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~-Iaea~TGeGKTlaf~LP~~l~aL------~g~~vlVltptreLA~qd~e~~~~l~~~ 150 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN-IAEMKTGEGKTLTSTLPVYLNAL------TGKGVHVVTVNEYLASRDAEQMGKIFEF 150 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS-EEECCTTSCHHHHHHHHHHHHHT------TSSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC-EEEccCCcHHHHHHHHHHHHHHH------cCCCEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 4788 99999999999999966 99999999999999999863221 235699999999999998887776 4
Q ss_pred cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHH-HHHHhcc------cccccceeEEEEeCCCcccCCC-----
Q 000174 375 TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQIL-LNILRHS------IIKMEAINLLILDECHHAVKKH----- 442 (1931)
Q Consensus 375 ~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L-~d~L~~~------~l~l~~i~lLV~DEaH~~~~~~----- 442 (1931)
+|+++++++|++.... ++...+++|+|+||++| +|.|... .+.+..+.++|+||||+++-+.
T Consensus 151 lgl~v~~i~gg~~~~~------r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tpl 224 (844)
T 1tf5_A 151 LGLTVGLNLNSMSKDE------KREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPL 224 (844)
T ss_dssp TTCCEEECCTTSCHHH------HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEE
T ss_pred cCCeEEEEeCCCCHHH------HHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccch
Confidence 6999999999975421 12224789999999999 6665432 3567899999999999998333
Q ss_pred ----------cHHHHHHHHHhhcCC-------CCCcEEE-----------------EEeecCCC-CCCC-----------
Q 000174 443 ----------PYSLVMSEFYHTTSK-------EKRPSVF-----------------GMTASPVN-LKGV----------- 476 (1931)
Q Consensus 443 ----------~~~~im~~~~~~~~~-------~~~p~iL-----------------gLTATP~~-~~~~----------- 476 (1931)
.+...+..+....+. ....+++ ++|||-.. ...+
T Consensus 225 Iisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~ 304 (844)
T 1tf5_A 225 IISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQ 304 (844)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCC
T ss_pred hhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhh
Confidence 256666777776642 1234555 67777210 0000
Q ss_pred --------------------------CchhHHHHHHHHHHHh-cCC---eEEEecchHHHhhhCCCCceeEEEeccchhh
Q 000174 477 --------------------------SSQVDCAIKICNLESK-LDS---VVCTIKDRKELEKHVPMPSEVVVEYDKAASL 526 (1931)
Q Consensus 477 --------------------------~~~~~~~~~l~~Le~~-l~~---~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~ 526 (1931)
.-+..+...+..-+.. +.. ...++.....+..+-...- ...--. .
T Consensus 305 ~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~G--mTGTa~--t- 379 (844)
T 1tf5_A 305 KDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAG--MTGTAK--T- 379 (844)
T ss_dssp BTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEE--EESCCG--G-
T ss_pred cCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhcc--CCcccc--h-
Confidence 0000000000000000 011 2233333222222211100 000000 0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHH
Q 000174 527 WSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYK 606 (1931)
Q Consensus 527 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~ 606 (1931)
. ..++..+|++.-
T Consensus 380 -e-----------------------------------~~e~~~iY~l~v------------------------------- 392 (844)
T 1tf5_A 380 -E-----------------------------------EEEFRNIYNMQV------------------------------- 392 (844)
T ss_dssp -G-----------------------------------HHHHHHHHCCCE-------------------------------
T ss_pred -h-----------------------------------HHHHHHHhCCce-------------------------------
Confidence 0 000011111000
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCC
Q 000174 607 VAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGG 686 (1931)
Q Consensus 607 ~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~ 686 (1931)
..++. .. ........+
T Consensus 393 ------------------------------------v~IPt------------------n~---p~~r~d~~d------- 408 (844)
T 1tf5_A 393 ------------------------------------VTIPT------------------NR---PVVRDDRPD------- 408 (844)
T ss_dssp ------------------------------------EECCC------------------SS---CCCCEECCC-------
T ss_pred ------------------------------------EEecC------------------CC---CcccccCCc-------
Confidence 00000 00 000000000
Q ss_pred CchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccH
Q 000174 687 EHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRT 766 (1931)
Q Consensus 687 e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~ 766 (1931)
+.......|...|++.+... ...+.++||||+++..++.|+..|.. .++++..+|| ++.+
T Consensus 409 ----------~v~~~~~~K~~al~~~i~~~-~~~~~pvLVft~s~~~se~Ls~~L~~----~gi~~~vLhg-----~~~~ 468 (844)
T 1tf5_A 409 ----------LIYRTMEGKFKAVAEDVAQR-YMTGQPVLVGTVAVETSELISKLLKN----KGIPHQVLNA-----KNHE 468 (844)
T ss_dssp ----------EEESSHHHHHHHHHHHHHHH-HHHTCCEEEEESCHHHHHHHHHHHHT----TTCCCEEECS-----SCHH
T ss_pred ----------EEEeCHHHHHHHHHHHHHHH-HhcCCcEEEEECCHHHHHHHHHHHHH----CCCCEEEeeC-----CccH
Confidence 00012235788888877653 12355799999999999999999998 7899999999 8888
Q ss_pred HHHHHHHHHhhcCCceEEEEecccccCCCCC--------CCCEEEEcCCCCCHHHHHHhhccCCCCCCcEE--EEEecCC
Q 000174 767 FQMQETIAKFRDGRVTLLVATSVAEEGLDIR--------QCNVVIRFDLAKTVLAYIQSRGRARKPGSDYI--LMIERGN 836 (1931)
Q Consensus 767 ~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip--------~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~i--vlv~~~~ 836 (1931)
++|..+.++|+.| .|||||+||+||+||+ ++.+||+||+|.+...|+||+|||||.|..+. +++..++
T Consensus 469 rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 469 REAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp HHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 8887666777766 6999999999999999 78899999999999999999999999998843 5555444
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=353.91 Aligned_cols=299 Identities=19% Similarity=0.215 Sum_probs=216.2
Q ss_pred CCCCCCcHHHHHHHHHHhc-----c--CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHH
Q 000174 299 MPEEQARPYQLDVLEQAKK-----K--NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVI 371 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~-----~--n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l 371 (1931)
.+ .++||+|.++++.+++ + ++|++++||+|||++|++++...+. .+++++|||||++|+.||++.+
T Consensus 600 f~-~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~------~g~~vlvlvPt~~La~Q~~~~~ 672 (1151)
T 2eyq_A 600 FP-FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD------NHKQVAVLVPTTLLAQQHYDNF 672 (1151)
T ss_dssp CC-SCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT------TTCEEEEECSSHHHHHHHHHHH
T ss_pred CC-CCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH------hCCeEEEEechHHHHHHHHHHH
Confidence 44 4579999999999876 2 7999999999999999988766543 3468999999999999999999
Q ss_pred HHHc---CCcEEEEeCCCcccccchHHHHhhcC-CccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHH
Q 000174 372 REQT---GYVVGHYCGEMGQDFWDAQRWQREFD-TKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLV 447 (1931)
Q Consensus 372 ~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~-~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~i 447 (1931)
++.+ ++++..++|..+... ....|..... .++|+|+||+.|. ..+.+.++++|||||||++.. .....
T Consensus 673 ~~~~~~~~i~v~~l~~~~~~~~-~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH~~g~--~~~~~ 744 (1151)
T 2eyq_A 673 RDRFANWPVRIEMISRFRSAKE-QTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHRFGV--RHKER 744 (1151)
T ss_dssp HHHSTTTTCCEEEESTTSCHHH-HHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGGSCH--HHHHH
T ss_pred HHHhhcCCCeEEEEeCCCCHHH-HHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechHhcCh--HHHHH
Confidence 9876 578888888765432 2333444434 5999999998774 346789999999999999743 33334
Q ss_pred HHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCcee--EEEeccchh
Q 000174 448 MSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEV--VVEYDKAAS 525 (1931)
Q Consensus 448 m~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~--~~~y~~~~~ 525 (1931)
++.+. ..+++|+|||||... .+......+. ....+ ...|... +..+..
T Consensus 745 l~~l~------~~~~vl~lSATp~p~-----------~l~~~~~~~~-~~~~i---------~~~~~~r~~i~~~~~--- 794 (1151)
T 2eyq_A 745 IKAMR------ANVDILTLTATPIPR-----------TLNMAMSGMR-DLSII---------ATPPARRLAVKTFVR--- 794 (1151)
T ss_dssp HHHHH------TTSEEEEEESSCCCH-----------HHHHHHTTTS-EEEEC---------CCCCCBCBCEEEEEE---
T ss_pred HHHhc------CCCCEEEEcCCCChh-----------hHHHHHhcCC-CceEE---------ecCCCCccccEEEEe---
Confidence 43332 237899999999740 1111111010 00000 0000000 000000
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHH
Q 000174 526 LWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAY 605 (1931)
Q Consensus 526 ~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~ 605 (1931)
T Consensus 795 -------------------------------------------------------------------------------- 794 (1151)
T 2eyq_A 795 -------------------------------------------------------------------------------- 794 (1151)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccC
Q 000174 606 KVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSG 685 (1931)
Q Consensus 606 ~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~ 685 (1931)
T Consensus 795 -------------------------------------------------------------------------------- 794 (1151)
T 2eyq_A 795 -------------------------------------------------------------------------------- 794 (1151)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCcccc
Q 000174 686 GEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMR 765 (1931)
Q Consensus 686 ~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~ 765 (1931)
. ..+......++... ..+.+++|||+++.++..+++.|+.. ++++++..+|| +|+
T Consensus 795 ---------------~-~~~~~i~~~il~~l--~~g~qvlvf~~~v~~~~~l~~~L~~~--~p~~~v~~lhg-----~~~ 849 (1151)
T 2eyq_A 795 ---------------E-YDSMVVREAILREI--LRGGQVYYLYNDVENIQKAAERLAEL--VPEARIAIGHG-----QMR 849 (1151)
T ss_dssp ---------------E-CCHHHHHHHHHHHH--TTTCEEEEECCCSSCHHHHHHHHHHH--CTTSCEEECCS-----SCC
T ss_pred ---------------c-CCHHHHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHh--CCCCeEEEEeC-----CCC
Confidence 0 00000011111221 23578999999999999999999874 24788999999 999
Q ss_pred HHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCC-CCCHHHHHHhhccCCCCCCc
Q 000174 766 TFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDL-AKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 766 ~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~-p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
+.+|++++++|++|+++|||||+++++|||+|+|++||.++. ++++.+|+||+||+||.|..
T Consensus 850 ~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~ 912 (1151)
T 2eyq_A 850 ERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQ 912 (1151)
T ss_dssp HHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBC
T ss_pred HHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCc
Confidence 999999999999999999999999999999999999999998 68999999999999999866
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-30 Score=356.25 Aligned_cols=159 Identities=19% Similarity=0.235 Sum_probs=120.2
Q ss_pred hcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000174 297 EKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT 375 (1931)
Q Consensus 297 ~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~ 375 (1931)
+..|+. | ++|.++++.++. +|+|++++||||||+ |++|+...+.. .+.++|||+||++|+.|++++++.++
T Consensus 52 ~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-----~~~~~lil~PtreLa~Q~~~~l~~l~ 123 (1054)
T 1gku_B 52 KCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-----KGKRCYVIFPTSLLVIQAAETIRKYA 123 (1054)
T ss_dssp TTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-----TSCCEEEEESCHHHHHHHHHHHHHHH
T ss_pred HhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-----cCCeEEEEeccHHHHHHHHHHHHHHH
Confidence 447888 9 999999999999 899999999999998 77776554432 35679999999999999999999875
Q ss_pred ---CC----cEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHH
Q 000174 376 ---GY----VVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVM 448 (1931)
Q Consensus 376 ---~l----~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im 448 (1931)
++ ++..++|+..... ...+...+..++|+|+||++|.+++.+ +.++++|||||||++.+. ...+
T Consensus 124 ~~~~i~~~~~v~~~~Gg~~~~~--~~~~~~~l~~~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~~---~~~~ 194 (1054)
T 1gku_B 124 EKAGVGTENLIGYYHGRIPKRE--KENFMQNLRNFKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILKA---SKNV 194 (1054)
T ss_dssp TTTCCSGGGSEEECCSSCCSHH--HHHHHHSGGGCSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHTS---THHH
T ss_pred hhcCCCccceEEEEeCCCChhh--HHHHHhhccCCCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhhc---cccH
Confidence 56 8999999876532 122223333499999999999987765 669999999999999872 2333
Q ss_pred HHHHhhcCC---------CCCcEEEEEeecCCC
Q 000174 449 SEFYHTTSK---------EKRPSVFGMTASPVN 472 (1931)
Q Consensus 449 ~~~~~~~~~---------~~~p~iLgLTATP~~ 472 (1931)
+.++....- ...++++++|||+..
T Consensus 195 ~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~ 227 (1054)
T 1gku_B 195 DKLLHLLGFHYDLKTKSWVGEARGCLMVSTATA 227 (1054)
T ss_dssp HHHHHHTTEEEETTTTEEEECCSSEEEECCCCS
T ss_pred HHHHHHhCcchhhhhhhcccCCceEEEEecCCC
Confidence 333332210 123668889998654
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-29 Score=323.22 Aligned_cols=126 Identities=21% Similarity=0.111 Sum_probs=104.0
Q ss_pred CCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHH---cCCc
Q 000174 302 EQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQ---TGYV 378 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~---~~l~ 378 (1931)
..|+++|..+++.+++++ |+.++||+|||++|++|+..... .+..++||+||++||.|.++.+..+ ++++
T Consensus 73 ~~p~~VQ~~~i~~ll~G~-Iaem~TGsGKTlaf~LP~l~~~l------~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~ 145 (853)
T 2fsf_A 73 MRHFDVQLLGGMVLNERC-IAEMRTGEGKTLTATLPAYLNAL------TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLT 145 (853)
T ss_dssp CCCCHHHHHHHHHHHSSE-EEECCTTSCHHHHHHHHHHHHHT------TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCChHHHhhcccccCCe-eeeecCCchHHHHHHHHHHHHHH------cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCe
Confidence 589999999999999865 99999999999999999864322 2356999999999999988887764 5899
Q ss_pred EEEEeCCCcccccchHHHHhhcCCccEEEEcHHHH-HHHHhccc------ccccceeEEEEeCCCcccC
Q 000174 379 VGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQIL-LNILRHSI------IKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 379 v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L-~d~L~~~~------l~l~~i~lLV~DEaH~~~~ 440 (1931)
+++++|++... .++...+++|+|+||++| +|.|..+. +.+..+.++|+||||+++.
T Consensus 146 v~~i~GG~~~~------~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLi 208 (853)
T 2fsf_A 146 VGINLPGMPAP------AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILI 208 (853)
T ss_dssp EEECCTTCCHH------HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTT
T ss_pred EEEEeCCCCHH------HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHH
Confidence 99999997632 122234789999999999 78887542 5678999999999999984
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-30 Score=327.88 Aligned_cols=277 Identities=19% Similarity=0.189 Sum_probs=195.9
Q ss_pred CCCCCcHHHHHHHHHHhc-cCE-EEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCC
Q 000174 300 PEEQARPYQLDVLEQAKK-KNT-IAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY 377 (1931)
Q Consensus 300 ~~~~~~~~Q~eai~~~l~-~n~-Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l 377 (1931)
|+.+++|+|+ +++.+++ +++ |++++||||||++|++++...+.. .+.++|||+||++|+.|+++++. ++
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-----~~~~~lvl~Ptr~La~Q~~~~l~---g~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-----RRLRTLILAPTRVVAAEMEEALR---GL 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-----TTCCEEEEESSHHHHHHHHHHTT---TS
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-----cCCcEEEECCCHHHHHHHHHHhc---Cc
Confidence 4678999985 7898887 565 999999999999999988755442 24679999999999999999885 44
Q ss_pred cEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCC
Q 000174 378 VVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSK 457 (1931)
Q Consensus 378 ~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~ 457 (1931)
.+..-.+... .....+..|.++|++.|.+.+.+. ..+.++++|||||||++ + ........+......
T Consensus 72 ~v~~~~~~~~---------~~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~--~~~~~~~~~~~~~~~ 138 (451)
T 2jlq_A 72 PIRYQTPAVK---------SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-D--PCSVAARGYISTRVE 138 (451)
T ss_dssp CEEECCTTCS---------CCCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-S--HHHHHHHHHHHHHHH
T ss_pred eeeeeecccc---------ccCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-C--cchHHHHHHHHHhhc
Confidence 4432222111 012245679999999998887654 56889999999999988 2 333322333322212
Q ss_pred CCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhhhHHHHHHHHHH
Q 000174 458 EKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQME 537 (1931)
Q Consensus 458 ~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~l~ 537 (1931)
...+++++|||||..... .. ....+...... ...
T Consensus 139 ~~~~~~i~~SAT~~~~~~---------------~~----------------~~~~~~~~~~~-~~~-------------- 172 (451)
T 2jlq_A 139 MGEAAAIFMTATPPGSTD---------------PF----------------PQSNSPIEDIE-REI-------------- 172 (451)
T ss_dssp TTSCEEEEECSSCTTCCC---------------SS----------------CCCSSCEEEEE-CCC--------------
T ss_pred CCCceEEEEccCCCccch---------------hh----------------hcCCCceEecC-ccC--------------
Confidence 235899999999863110 00 00001000000 000
Q ss_pred HHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 000174 538 VAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQN 617 (1931)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~ 617 (1931)
...
T Consensus 173 ------------------------------------p~~----------------------------------------- 175 (451)
T 2jlq_A 173 ------------------------------------PER----------------------------------------- 175 (451)
T ss_dssp ------------------------------------CSS-----------------------------------------
T ss_pred ------------------------------------Cch-----------------------------------------
Confidence 000
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhhhhhcc
Q 000174 618 DERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAV 697 (1931)
Q Consensus 618 ~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~ 697 (1931)
T Consensus 176 -------------------------------------------------------------------------------- 175 (451)
T 2jlq_A 176 -------------------------------------------------------------------------------- 175 (451)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhh
Q 000174 698 ADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFR 777 (1931)
Q Consensus 698 ~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr 777 (1931)
.. . .+.+.+.+ ...++||||+++..++.+++.|+. .++.+..+|| .+. ++++++|+
T Consensus 176 --~~-~----~~~~~l~~----~~~~~lVF~~s~~~a~~l~~~L~~----~g~~~~~lh~-----~~~----~~~~~~f~ 231 (451)
T 2jlq_A 176 --SW-N----TGFDWITD----YQGKTVWFVPSIKAGNDIANCLRK----SGKRVIQLSR-----KTF----DTEYPKTK 231 (451)
T ss_dssp --CC-S----SSCHHHHH----CCSCEEEECSSHHHHHHHHHHHHT----TTCCEEEECT-----TTH----HHHGGGGG
T ss_pred --hh-H----HHHHHHHh----CCCCEEEEcCCHHHHHHHHHHHHH----cCCeEEECCH-----HHH----HHHHHhhc
Confidence 00 0 00111222 135899999999999999999998 5788999999 543 57999999
Q ss_pred cCCceEEEEecccccCCCCCCCCEEEEcC--------------------CCCCHHHHHHhhccCCCCCC
Q 000174 778 DGRVTLLVATSVAEEGLDIRQCNVVIRFD--------------------LAKTVLAYIQSRGRARKPGS 826 (1931)
Q Consensus 778 ~G~~~vLVaTdVaeeGlDip~~~lVI~fD--------------------~p~s~~~yiQr~GRa~R~Gs 826 (1931)
+|+.+|||||+++++|||+|+ ++||+|| .|.+..+|+||+|||||.|.
T Consensus 232 ~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~ 299 (451)
T 2jlq_A 232 LTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA 299 (451)
T ss_dssp SSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred cCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCC
Confidence 999999999999999999999 9999999 99999999999999999986
|
| >3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-30 Score=280.12 Aligned_cols=143 Identities=34% Similarity=0.523 Sum_probs=127.5
Q ss_pred hhHHHHHHHcCCCcCCHHHHHHHhcCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHH
Q 000174 1590 VDFHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNEN 1669 (1931)
Q Consensus 1590 ~~~~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~ 1669 (1931)
.++..||++|||+|+|+.||.+||||+||... .+||||||||||||+++|++|||.+||+.++|.|+.+|+.+|||++
T Consensus 26 ~~l~~le~~lgy~F~d~~LL~~AlTH~S~~~~--~~neRLEfLGDaVL~l~vs~~L~~~~P~~~eg~Lt~~r~~lVs~~~ 103 (170)
T 3o2r_A 26 KNIEKLEQSLTYEFKDKNLLIHALTHKSFKKS--YNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKS 103 (170)
T ss_dssp -CHHHHHHHHTCCCSSHHHHHHHTBCTTSSTT--CCSHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHSSHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHhcCCCCCCC--cchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHCHHH
Confidence 45899999999999999999999999999754 6999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCchhhhccCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCceeEEee
Q 000174 1670 FARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQV 1749 (1931)
Q Consensus 1670 La~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~~~v~~~ 1749 (1931)
||.+|.++||++||+.++++.. .+....+|+++|+|||+|||||+|+|++ .+++|
T Consensus 104 La~ia~~lgL~~~l~~~~~~~~-----------------------~~~~~~~~ilad~fEAliGAiylD~G~~--~a~~~ 158 (170)
T 3o2r_A 104 FAKIANSLNLGDFILMSVAEEN-----------------------NGGKEKPSILSDALEAIIGAIHLEAGFE--FAKTI 158 (170)
T ss_dssp HHHHHHHTTGGGTCBCCHHHHH-----------------------TTGGGCHHHHHHHHHHHHHHHHHHHCHH--HHHHH
T ss_pred HHHHHHHcCcHHhhhcCcchhh-----------------------cCCCCcchHHHHHHHHHHHHHHHHCCHH--HHHHH
Confidence 9999999999999998776532 1234679999999999999999999965 56788
Q ss_pred eccCCCCCCC
Q 000174 1750 FQPLLDPMVT 1759 (1931)
Q Consensus 1750 ~~~~l~~~i~ 1759 (1931)
+.+++.|.++
T Consensus 159 i~~~~~~~~~ 168 (170)
T 3o2r_A 159 ALRLIEKNFP 168 (170)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHHHh
Confidence 8887777654
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-28 Score=311.41 Aligned_cols=145 Identities=17% Similarity=0.110 Sum_probs=114.2
Q ss_pred cCCCCCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH---H
Q 000174 298 KMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE---Q 374 (1931)
Q Consensus 298 ~~~~~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~---~ 374 (1931)
.+|+ .|+++|..+++.+++++ |+.++||+|||++|++|+..... .+..|+||+||++|+.|.++.+.. +
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~-Iaem~TGeGKTLa~~LP~~l~aL------~g~~v~VvTpTreLA~Qdae~m~~l~~~ 178 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN-VAEMKTGEGKTLTCVLPAYLNAL------AGNGVHIVTVNDYLAKRDSEWMGRVHRF 178 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE-EEECCTTSCHHHHTHHHHHHHHT------TTSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC-EEEecCCCccHHHHHHHHHHHHH------hCCCeEEEeCCHHHHHHHHHHHHHHHhh
Confidence 3566 99999999999999855 99999999999999999853222 134699999999999997777765 5
Q ss_pred cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHH-HHHHhcc------cccccceeEEEEeCCCcccCC------
Q 000174 375 TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQIL-LNILRHS------IIKMEAINLLILDECHHAVKK------ 441 (1931)
Q Consensus 375 ~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L-~d~L~~~------~l~l~~i~lLV~DEaH~~~~~------ 441 (1931)
+|++|++++|++.... ++...+++|+|+||++| +|.|... .+.+..++++|+||||+++.+
T Consensus 179 lGLsv~~i~gg~~~~~------r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPL 252 (922)
T 1nkt_A 179 LGLQVGVILATMTPDE------RRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPL 252 (922)
T ss_dssp TTCCEEECCTTCCHHH------HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCE
T ss_pred cCCeEEEEeCCCCHHH------HHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccce
Confidence 6999999999876321 12224689999999999 7877654 366788999999999999843
Q ss_pred ---------CcHHHHHHHHHhhcC
Q 000174 442 ---------HPYSLVMSEFYHTTS 456 (1931)
Q Consensus 442 ---------~~~~~im~~~~~~~~ 456 (1931)
+.+...+..+....+
T Consensus 253 iiSg~~~~~~~~y~~i~~iv~~L~ 276 (922)
T 1nkt_A 253 IISGPADGASNWYTEFARLAPLME 276 (922)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHSC
T ss_pred eecCCCCcchhHHHHHHHHHHhCc
Confidence 246666777777665
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-29 Score=325.34 Aligned_cols=275 Identities=17% Similarity=0.160 Sum_probs=198.8
Q ss_pred CCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEE
Q 000174 302 EQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVG 380 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~ 380 (1931)
..++|+|+.+++.+++ +++|++++||||||++|++++.+.+.. .+.++|||+||++|+.|+.++++ ++.+.
T Consensus 170 ~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-----~~~~vLvl~PtreLa~Qi~~~l~---~~~v~ 241 (618)
T 2whx_A 170 RIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-----RRLRTLILAPTRVVAAEMEEALR---GLPIR 241 (618)
T ss_dssp CCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-----TTCCEEEEESSHHHHHHHHHHTT---TSCEE
T ss_pred ccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-----CCCeEEEEcChHHHHHHHHHHhc---CCcee
Confidence 6678887777888877 999999999999999999988766543 34679999999999999998886 44554
Q ss_pred EEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCC
Q 000174 381 HYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKR 460 (1931)
Q Consensus 381 ~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~ 460 (1931)
+.+..... ..-.+..+.++|.+.|...+... ..+.++++|||||||++ +..+...+..+....+. ..
T Consensus 242 -~~~~~l~~--------~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~--~~~~~~~~~~i~~~l~~-~~ 308 (618)
T 2whx_A 242 -YQTPAVKS--------DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT--DPCSVAARGYISTRVEM-GE 308 (618)
T ss_dssp -ECCTTSSC--------CCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC--SHHHHHHHHHHHHHHHH-TS
T ss_pred -Eeccccee--------ccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC--CccHHHHHHHHHHHhcc-cC
Confidence 33321000 01134567889999988766554 45889999999999998 33565555555544321 34
Q ss_pred cEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCC-CCceeEEEeccchhhhHHHHHHHHHHHH
Q 000174 461 PSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVP-MPSEVVVEYDKAASLWSLHEQLKQMEVA 539 (1931)
Q Consensus 461 p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~-~p~e~~~~y~~~~~~~~l~~~i~~l~~~ 539 (1931)
+++++|||||..... .+.. .+....+.....
T Consensus 309 ~q~il~SAT~~~~~~--------------------------------~~~~~~~~~~~v~~~~~---------------- 340 (618)
T 2whx_A 309 AAAIFMTATPPGSTD--------------------------------PFPQSNSPIEDIEREIP---------------- 340 (618)
T ss_dssp CEEEEECSSCTTCCC--------------------------------SSCCCSSCEEEEECCCC----------------
T ss_pred ccEEEEECCCchhhh--------------------------------hhhccCCceeeecccCC----------------
Confidence 899999999864110 0000 011000000000
Q ss_pred HHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 000174 540 VEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDE 619 (1931)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~ 619 (1931)
T Consensus 341 -------------------------------------------------------------------------------- 340 (618)
T 2whx_A 341 -------------------------------------------------------------------------------- 340 (618)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhhhhhcccC
Q 000174 620 RANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVAD 699 (1931)
Q Consensus 620 ~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~ 699 (1931)
.
T Consensus 341 -----------------------------------------------------------~-------------------- 341 (618)
T 2whx_A 341 -----------------------------------------------------------E-------------------- 341 (618)
T ss_dssp -----------------------------------------------------------S--------------------
T ss_pred -----------------------------------------------------------H--------------------
Confidence 0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcC
Q 000174 700 GKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDG 779 (1931)
Q Consensus 700 ~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G 779 (1931)
.+...+++.|.+ ...++||||+++..++.+++.|+. .++++..+|| . +|++++++|++|
T Consensus 342 ----~~~~~ll~~l~~----~~~~~LVF~~s~~~a~~l~~~L~~----~g~~v~~lhg-----~----~R~~~l~~F~~g 400 (618)
T 2whx_A 342 ----RSWNTGFDWITD----YQGKTVWFVPSIKAGNDIANCLRK----SGKRVIQLSR-----K----TFDTEYPKTKLT 400 (618)
T ss_dssp ----SCCSSSCHHHHH----CCSCEEEECSSHHHHHHHHHHHHH----TTCCEEEECT-----T----THHHHTTHHHHS
T ss_pred ----HHHHHHHHHHHh----CCCCEEEEECChhHHHHHHHHHHH----cCCcEEEECh-----H----HHHHHHHhhcCC
Confidence 000001112222 245899999999999999999998 5789999998 3 677899999999
Q ss_pred CceEEEEecccccCCCCCCCCEE--------------------EEcCCCCCHHHHHHhhccCCCCCC
Q 000174 780 RVTLLVATSVAEEGLDIRQCNVV--------------------IRFDLAKTVLAYIQSRGRARKPGS 826 (1931)
Q Consensus 780 ~~~vLVaTdVaeeGlDip~~~lV--------------------I~fD~p~s~~~yiQr~GRa~R~Gs 826 (1931)
+.+|||||+++++|||+| +++| |+||.|.+..+|+||+|||||.|.
T Consensus 401 ~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~ 466 (618)
T 2whx_A 401 DWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA 466 (618)
T ss_dssp CCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred CcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCC
Confidence 999999999999999998 9888 888899999999999999999964
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-27 Score=337.99 Aligned_cols=165 Identities=18% Similarity=0.213 Sum_probs=124.6
Q ss_pred CCCCCcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhh-----cCCCcEEEEEeCChhHHHHHHHHHH
Q 000174 300 PEEQARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQR-----QNKKMLAVFLVPKVPLVYQQAEVIR 372 (1931)
Q Consensus 300 ~~~~~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~-----~~~~~~vL~LvPT~~Lv~Q~~~~l~ 372 (1931)
++..++++|.++++.+++ +|+++++|||||||++|.++|.+.+.+... ...+.++|+|+|+++|+.|..+.++
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 688999999999999987 899999999999999999999877764321 1346789999999999999999998
Q ss_pred HHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhccc--ccccceeEEEEeCCCcccCCCcH--H
Q 000174 373 EQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSI--IKMEAINLLILDECHHAVKKHPY--S 445 (1931)
Q Consensus 373 ~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~--l~l~~i~lLV~DEaH~~~~~~~~--~ 445 (1931)
+.+ |++|+.++|+..... . ....++|+||||+++..++.++. -.+.++++|||||+|.+.++-+. .
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~---~----~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE 228 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCK---E----EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLE 228 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCC---T----TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCc---c----ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHHHH
Confidence 864 789999999876532 1 23578999999999865555432 24788999999999977553221 2
Q ss_pred HHHHHHHhhc-CCCCCcEEEEEeecCC
Q 000174 446 LVMSEFYHTT-SKEKRPSVFGMTASPV 471 (1931)
Q Consensus 446 ~im~~~~~~~-~~~~~p~iLgLTATP~ 471 (1931)
.++..+.... ......|++|||||..
T Consensus 229 ~~l~rl~~~~~~~~~~~riI~LSATl~ 255 (1724)
T 4f92_B 229 ALVARAIRNIEMTQEDVRLIGLSATLP 255 (1724)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEEECSCT
T ss_pred HHHHHHHHHHHhCCCCCcEEEEecccC
Confidence 2222222111 1123479999999965
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-28 Score=312.63 Aligned_cols=148 Identities=16% Similarity=0.091 Sum_probs=117.6
Q ss_pred CCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCc
Q 000174 300 PEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYV 378 (1931)
Q Consensus 300 ~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~ 378 (1931)
....++++|.++++.+.+ +++|+.++||||||.+|.+++.+ .+.++||++||++|+.|+++.+.+.++..
T Consensus 214 ~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~---------~g~~vLVl~PTReLA~Qia~~l~~~~g~~ 284 (666)
T 3o8b_A 214 MRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA---------QGYKVLVLNPSVAATLGFGAYMSKAHGID 284 (666)
T ss_dssp HHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH---------TTCCEEEEESCHHHHHHHHHHHHHHHSCC
T ss_pred ccCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH---------CCCeEEEEcchHHHHHHHHHHHHHHhCCC
Confidence 344567777777777766 78999999999999999988754 23479999999999999999999989999
Q ss_pred EEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCC
Q 000174 379 VGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKE 458 (1931)
Q Consensus 379 v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~ 458 (1931)
+....|+... ..+.+|+|+||++| +.+..+.+.++++|||||||.+ + ..+...+..+....+..
T Consensus 285 vg~~vG~~~~-----------~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l-~-~~~~~~l~~Il~~l~~~ 348 (666)
T 3o8b_A 285 PNIRTGVRTI-----------TTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHST-D-STTILGIGTVLDQAETA 348 (666)
T ss_dssp CEEECSSCEE-----------CCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCC-S-HHHHHHHHHHHHHTTTT
T ss_pred eeEEECcEec-----------cCCCCEEEECcHHH---HhCCCcccCcccEEEEccchhc-C-ccHHHHHHHHHHhhhhc
Confidence 9888887531 25789999999998 4566778889999999999665 3 26666666676666555
Q ss_pred CCcEEEEEeecCCC
Q 000174 459 KRPSVFGMTASPVN 472 (1931)
Q Consensus 459 ~~p~iLgLTATP~~ 472 (1931)
....+++|||||..
T Consensus 349 ~~~llil~SAT~~~ 362 (666)
T 3o8b_A 349 GARLVVLATATPPG 362 (666)
T ss_dssp TCSEEEEEESSCTT
T ss_pred CCceEEEECCCCCc
Confidence 55668889999863
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-28 Score=321.51 Aligned_cols=93 Identities=18% Similarity=0.231 Sum_probs=86.5
Q ss_pred CceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCC
Q 000174 721 DFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCN 800 (1931)
Q Consensus 721 ~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~ 800 (1931)
..++||||+++..++.+++.|+. .++++..+|| . +|++++++|++|+++|||||+++++|||+| ++
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~----~g~~v~~lHg-----~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~ 475 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQR----AGKRVIQLNR-----K----SYDTEYPKCKNGDWDFVITTDISEMGANFG-AS 475 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHT----TTCCEEEECS-----S----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CS
T ss_pred CCCEEEEECCHHHHHHHHHHHHh----CCCeEEEeCh-----H----HHHHHHHHHHCCCceEEEECchhhcceeeC-Cc
Confidence 56899999999999999999998 4789999999 3 688899999999999999999999999999 99
Q ss_pred EEEE--------------------cCCCCCHHHHHHhhccCCCC-CCc
Q 000174 801 VVIR--------------------FDLAKTVLAYIQSRGRARKP-GSD 827 (1931)
Q Consensus 801 lVI~--------------------fD~p~s~~~yiQr~GRa~R~-Gs~ 827 (1931)
+||+ ||+|.++.+|+||+|||||. |+.
T Consensus 476 ~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~ 523 (673)
T 2wv9_A 476 RVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQI 523 (673)
T ss_dssp EEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCC
T ss_pred EEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCC
Confidence 9998 77999999999999999998 555
|
| >3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-29 Score=281.86 Aligned_cols=146 Identities=23% Similarity=0.312 Sum_probs=122.7
Q ss_pred HHHHHHcCCC-cCCHHHHHHHhcCCCCCCC---------CCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 000174 1593 HALEDALKIK-FKDRGLLVEAITHASRPSS---------GVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRA 1662 (1931)
Q Consensus 1593 ~~le~~lgy~-F~~~~LL~~AlTH~S~~~~---------~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~ 1662 (1931)
..||++|||+ |+|+.||.+||||+||... ...+||||||||||||+++|++|||.+||++++|.||.+|+
T Consensus 86 ~~lE~~lgY~~F~d~~LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDaVL~l~vs~~L~~~~P~~~eG~Lt~lRs 165 (246)
T 3rv1_A 86 TDVDMFIKYPVVYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKE 165 (246)
T ss_dssp CGGGGGCSSCCCSCHHHHHHTTCCCC--------------CCCSHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HHHHHhcCCCCcCCHHHHHHHHcCCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Confidence 3589999999 9999999999999999643 24699999999999999999999999999999999999999
Q ss_pred HhhChHHHHHHHHHcCchhhhccCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccc-cC
Q 000174 1663 AAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDS-GR 1741 (1931)
Q Consensus 1663 ~lv~n~~La~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDs-g~ 1741 (1931)
.+|||.+||.+|.++||++||+++.+.... ......++++||+|||+|||||+|+ |.
T Consensus 166 ~lVsn~~La~iA~~lgL~~~l~~~~g~~~~----------------------~~~~~~~~ilAD~fEAlIGAIylD~~g~ 223 (246)
T 3rv1_A 166 SIVNNNNLFDWSTKLNFTKRLQGNIATPTR----------------------VVKDKMSKRYADCVQAYIGALVIDRFGT 223 (246)
T ss_dssp HHHSHHHHHHHHHHTTSHHHHCSSCC---------------------------------CHHHHHHHHHHHHHHHHHCSS
T ss_pred HHhCHHHHHHHHHHCCcHHHHhhcCCHhhh----------------------ccCcccccHHHHHHHHHHHHHhHcCCCC
Confidence 999999999999999999999965332110 0112468999999999999999999 88
Q ss_pred CceeEEeeeccCCCCCCCC
Q 000174 1742 DTSVVWQVFQPLLDPMVTP 1760 (1931)
Q Consensus 1742 ~~~~v~~~~~~~l~~~i~~ 1760 (1931)
++..+++|+.+++.|.++.
T Consensus 224 ~l~~v~~~l~~L~~p~l~e 242 (246)
T 3rv1_A 224 EFLDIKEWLEELSEKKLAK 242 (246)
T ss_dssp TTHHHHHHHHHHTHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987765
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=330.33 Aligned_cols=168 Identities=20% Similarity=0.196 Sum_probs=126.9
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHH
Q 000174 294 EAKEKMPEEQARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVI 371 (1931)
Q Consensus 294 ~~l~~~~~~~~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l 371 (1931)
+++...+|..++|+|.++++.++. +|+++++|||||||++|.++|.+.+.+ .++.++|+|+|+++||.|.++.+
T Consensus 917 e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~----~~~~kavyi~P~raLa~q~~~~~ 992 (1724)
T 4f92_B 917 ESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQ----SSEGRCVYITPMEALAEQVYMDW 992 (1724)
T ss_dssp HTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHH----CTTCCEEEECSCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHh----CCCCEEEEEcChHHHHHHHHHHH
Confidence 556666789999999999999987 789999999999999999999887764 34567999999999999999998
Q ss_pred HHH----cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcc--cccccceeEEEEeCCCcccCCCc--
Q 000174 372 REQ----TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS--IIKMEAINLLILDECHHAVKKHP-- 443 (1931)
Q Consensus 372 ~~~----~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~--~l~l~~i~lLV~DEaH~~~~~~~-- 443 (1931)
++. ++++|+.++|+...+. +....++|+||||++|..++.+. ...+.++++||+||+|.+.+..+
T Consensus 993 ~~~f~~~~g~~V~~ltGd~~~~~-------~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~ 1065 (1724)
T 4f92_B 993 YEKFQDRLNKKVVLLTGETSTDL-------KLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPV 1065 (1724)
T ss_dssp HHHHTTTSCCCEEECCSCHHHHH-------HHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHH
T ss_pred HHHhchhcCCEEEEEECCCCcch-------hhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCcc
Confidence 764 3678999998754321 12356899999999997777653 23478999999999998876322
Q ss_pred HHHHHHHHHhhc-CCCCCcEEEEEeecCCC
Q 000174 444 YSLVMSEFYHTT-SKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 444 ~~~im~~~~~~~-~~~~~p~iLgLTATP~~ 472 (1931)
+..++..+.... ......|+++||||..+
T Consensus 1066 le~il~rl~~i~~~~~~~~riI~lSATl~N 1095 (1724)
T 4f92_B 1066 LEVICSRMRYISSQIERPIRIVALSSSLSN 1095 (1724)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEEEESCBTT
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEeCCCCC
Confidence 122222221111 12235899999999753
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-29 Score=316.08 Aligned_cols=91 Identities=18% Similarity=0.209 Sum_probs=76.7
Q ss_pred CceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCC
Q 000174 721 DFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCN 800 (1931)
Q Consensus 721 ~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~ 800 (1931)
+.++||||+++..++.+++.|+. .++++..+|| . +|++++++|++|+++|||||+++++|||+| ++
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~----~~~~v~~lhg-----~----~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~ 242 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRK----AGKSVVVLNR-----K----TFEREYPTIKQKKPDFILATDIAEMGANLC-VE 242 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHH----TTCCEEECCS-----S----SCC--------CCCSEEEESSSTTCCTTCC-CS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHH----cCCCEEEecc-----h----hHHHHHhhhcCCCceEEEECChhheeeccC-ce
Confidence 46899999999999999999998 4789999999 2 467899999999999999999999999999 99
Q ss_pred EEEE-------------------cCCCCCHHHHHHhhccCCCCC
Q 000174 801 VVIR-------------------FDLAKTVLAYIQSRGRARKPG 825 (1931)
Q Consensus 801 lVI~-------------------fD~p~s~~~yiQr~GRa~R~G 825 (1931)
+||+ ||.|.++.+|+||+|||||.|
T Consensus 243 ~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g 286 (440)
T 1yks_A 243 RVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNP 286 (440)
T ss_dssp EEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCT
T ss_pred EEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCC
Confidence 9996 999999999999999999983
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=302.27 Aligned_cols=92 Identities=17% Similarity=0.239 Sum_probs=83.9
Q ss_pred CceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCC
Q 000174 721 DFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCN 800 (1931)
Q Consensus 721 ~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~ 800 (1931)
..++||||+++..++.+++.|+. .++++..+|| . +|++++++|++|+++|||||+++++|||+| +.
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~v~~lhg-----~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~ 236 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQK----AGKKVLYLNR-----K----TFESEYPKCKSEKWDFVITTDISEMGANFK-AD 236 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHH----TTCCEEEEST-----T----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHH----cCCeEEEeCC-----c----cHHHHHHhhcCCCCeEEEECchHHcCcccC-Cc
Confidence 45899999999999999999998 4789999999 4 577899999999999999999999999999 54
Q ss_pred E-----------------EEEcCCCCCHHHHHHhhccCCCCCC
Q 000174 801 V-----------------VIRFDLAKTVLAYIQSRGRARKPGS 826 (1931)
Q Consensus 801 l-----------------VI~fD~p~s~~~yiQr~GRa~R~Gs 826 (1931)
. ||+||.|.++.+|+||+||+||.|.
T Consensus 237 ~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~ 279 (431)
T 2v6i_A 237 RVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPE 279 (431)
T ss_dssp EEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred EEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCC
Confidence 4 6889999999999999999999874
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.5e-28 Score=307.15 Aligned_cols=100 Identities=17% Similarity=0.146 Sum_probs=86.1
Q ss_pred CceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCC
Q 000174 721 DFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCN 800 (1931)
Q Consensus 721 ~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~ 800 (1931)
..++||||+++..++.+++.|+. .++++..+|| . +|++++++|++|+.+|||||+++++|||+|+ +
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~----~g~~v~~lh~-----~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~ 255 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQR----AGKKVIQLNR-----K----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-S 255 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHH----TTCCEEEEST-----T----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-S
T ss_pred CCCEEEEeCChHHHHHHHHHHHh----cCCcEEecCH-----H----HHHHHHhhccCCCceEEEECChHHhCeecCC-C
Confidence 46899999999999999999998 5789999998 3 5677899999999999999999999999999 9
Q ss_pred EEEE--------------------cCCCCCHHHHHHhhccCCCCCC-c--EEEEEec
Q 000174 801 VVIR--------------------FDLAKTVLAYIQSRGRARKPGS-D--YILMIER 834 (1931)
Q Consensus 801 lVI~--------------------fD~p~s~~~yiQr~GRa~R~Gs-~--~ivlv~~ 834 (1931)
+||+ ||.|.++.+|+||+|||||.|. . .++++..
T Consensus 256 ~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~ 312 (459)
T 2z83_A 256 RVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGA 312 (459)
T ss_dssp EEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred EEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEcc
Confidence 9999 8899999999999999999985 3 4444443
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.6e-27 Score=314.50 Aligned_cols=318 Identities=16% Similarity=0.143 Sum_probs=214.2
Q ss_pred chhhhhcCCCCCCcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHH
Q 000174 292 KSEAKEKMPEEQARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAE 369 (1931)
Q Consensus 292 ~~~~l~~~~~~~~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~ 369 (1931)
..+.+...+ ..|++.|++++..++. ++++++++||||||.+ +|+. ++......+.+.+++|++|+++|+.|+++
T Consensus 83 ~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtl--lp~l-l~~~~~~~~~g~~ilvl~P~r~La~q~~~ 158 (773)
T 2xau_A 83 YVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQ--IPQF-VLFDEMPHLENTQVACTQPRRVAAMSVAQ 158 (773)
T ss_dssp HHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHH--HHHH-HHHHHCGGGGTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHH--HHHH-HHHhccccCCCceEEecCchHHHHHHHHH
Confidence 335555555 6789999999999887 5699999999999993 3332 11111112224679999999999999999
Q ss_pred HHHHHcCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCc-ccCCCcHHHHH
Q 000174 370 VIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHH-AVKKHPYSLVM 448 (1931)
Q Consensus 370 ~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~-~~~~~~~~~im 448 (1931)
.+...++..++...|... ... .......+|+|+||++|.+.+... ..+.++++|||||||. ..+.......+
T Consensus 159 ~l~~~~~~~v~~~vG~~i-~~~-----~~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah~R~ld~d~~~~~l 231 (773)
T 2xau_A 159 RVAEEMDVKLGEEVGYSI-RFE-----NKTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAHERTLATDILMGLL 231 (773)
T ss_dssp HHHHHTTCCBTTTEEEEE-TTE-----EECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGGGCCHHHHHHHHHH
T ss_pred HHHHHhCCchhheeccee-ccc-----cccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCccccccchHHHHHHH
Confidence 988877765544333210 000 011247899999999999877654 4588999999999995 54432334445
Q ss_pred HHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcC-CeEEEecchHHHhhhCCCCceeEEEeccchhhh
Q 000174 449 SEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLD-SVVCTIKDRKELEKHVPMPSEVVVEYDKAASLW 527 (1931)
Q Consensus 449 ~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~-~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~ 527 (1931)
+.+.... ...++++||||+.. ..+...++ ..+...... ..|.+ +.|.....
T Consensus 232 ~~l~~~~---~~~~iIl~SAT~~~--------------~~l~~~~~~~~vi~v~gr-------~~pv~--~~~~~~~~-- 283 (773)
T 2xau_A 232 KQVVKRR---PDLKIIIMSATLDA--------------EKFQRYFNDAPLLAVPGR-------TYPVE--LYYTPEFQ-- 283 (773)
T ss_dssp HHHHHHC---TTCEEEEEESCSCC--------------HHHHHHTTSCCEEECCCC-------CCCEE--EECCSSCC--
T ss_pred HHHHHhC---CCceEEEEeccccH--------------HHHHHHhcCCCcccccCc-------ccceE--EEEecCCc--
Confidence 5554433 24789999999842 12222333 222221100 01111 11110000
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000174 528 SLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKV 607 (1931)
Q Consensus 528 ~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~ 607 (1931)
. +
T Consensus 284 ------------------------------------------------~---~--------------------------- 285 (773)
T 2xau_A 284 ------------------------------------------------R---D--------------------------- 285 (773)
T ss_dssp ------------------------------------------------S---C---------------------------
T ss_pred ------------------------------------------------h---h---------------------------
Confidence 0 0
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCC
Q 000174 608 AQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGE 687 (1931)
Q Consensus 608 ~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e 687 (1931)
T Consensus 286 -------------------------------------------------------------------------------- 285 (773)
T 2xau_A 286 -------------------------------------------------------------------------------- 285 (773)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcC-------CCCCCceeEEEEccCC
Q 000174 688 HVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAEL-------PSLSFVKSASLIGHNN 760 (1931)
Q Consensus 688 ~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~-------~~l~~~~~~~l~G~~~ 760 (1931)
.....+..+.+++.. ....++||||+++..+..+++.|... ....++.+..+||
T Consensus 286 -------------~~~~~l~~l~~~~~~---~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg--- 346 (773)
T 2xau_A 286 -------------YLDSAIRTVLQIHAT---EEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYG--- 346 (773)
T ss_dssp -------------HHHHHHHHHHHHHHH---SCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECT---
T ss_pred -------------HHHHHHHHHHHHHHh---cCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCC---
Confidence 000011112222221 23679999999999999999998741 1125788999999
Q ss_pred CccccHHHHHHHHHHhh-----cCCceEEEEecccccCCCCCCCCEEEEcCC------------------CCCHHHHHHh
Q 000174 761 SQEMRTFQMQETIAKFR-----DGRVTLLVATSVAEEGLDIRQCNVVIRFDL------------------AKTVLAYIQS 817 (1931)
Q Consensus 761 ~~~~~~~~R~~~l~~Fr-----~G~~~vLVaTdVaeeGlDip~~~lVI~fD~------------------p~s~~~yiQr 817 (1931)
++++.+|.++++.|+ +|..+|||||+++++|||||+|++||+|++ |.+..+|+||
T Consensus 347 --~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR 424 (773)
T 2xau_A 347 --SLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQR 424 (773)
T ss_dssp --TCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHH
T ss_pred --CCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhh
Confidence 999999999999999 999999999999999999999999999887 8999999999
Q ss_pred hccCCCCCCc
Q 000174 818 RGRARKPGSD 827 (1931)
Q Consensus 818 ~GRa~R~Gs~ 827 (1931)
+|||||.+..
T Consensus 425 ~GRaGR~~~G 434 (773)
T 2xau_A 425 AGRAGRTRPG 434 (773)
T ss_dssp HHGGGSSSSE
T ss_pred ccccCCCCCC
Confidence 9999998433
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.3e-25 Score=298.39 Aligned_cols=187 Identities=19% Similarity=0.233 Sum_probs=124.2
Q ss_pred CCCCcHHHHHHHHHHhc---------------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHH
Q 000174 301 EEQARPYQLDVLEQAKK---------------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVY 365 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~---------------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~ 365 (1931)
...||+||.+|++.++. ++++++++||||||++++.++ .++.. .+...++|||||+++|+.
T Consensus 269 ~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~-~ll~~---~~~~~rvLvlvpr~eL~~ 344 (1038)
T 2w00_A 269 LLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAA-RLATE---LDFIDKVFFVVDRKDLDY 344 (1038)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHH-HHHTT---CTTCCEEEEEECGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHH-HHHHh---cCCCceEEEEeCcHHHHH
Confidence 35699999999999865 479999999999999985544 44432 233468999999999999
Q ss_pred HHHHHHHHHcCCcEEEEeCCCcccccchHHHHhhc--CCccEEEEcHHHHHHHHhccc--ccccceeEEEEeCCCcccCC
Q 000174 366 QQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREF--DTKQVLVMTAQILLNILRHSI--IKMEAINLLILDECHHAVKK 441 (1931)
Q Consensus 366 Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~--~~~~IlV~Tpq~L~d~L~~~~--l~l~~i~lLV~DEaH~~~~~ 441 (1931)
||.++++.+.... +.|+.+. ..+...+ .+.+|+|+|||+|.+.+.... ..+..+.+||+|||||+...
T Consensus 345 Q~~~~f~~f~~~~---v~~~~s~-----~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~ 416 (1038)
T 2w00_A 345 QTMKEYQRFSPDS---VNGSENT-----AGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG 416 (1038)
T ss_dssp HHHHHHHTTSTTC---SSSSCCC-----HHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH
T ss_pred HHHHHHHHhcccc---cccccCH-----HHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch
Confidence 9999999875432 2233222 2222222 478999999999999876532 24567899999999998642
Q ss_pred CcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCC
Q 000174 442 HPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMP 513 (1931)
Q Consensus 442 ~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p 513 (1931)
..+. .+....+ ..++|||||||....+.... ......++..++.+.-.+.+..-...|
T Consensus 417 ~~~~----~I~~~~p---~a~~lgfTATP~~~~~~~~~-------~~t~~~FG~~i~~Y~l~~AI~dg~l~p 474 (1038)
T 2w00_A 417 EAQK----NLKKKFK---RYYQFGFTGTPIFPENALGS-------ETTASVFGRELHSYVITDAIRDEKVLK 474 (1038)
T ss_dssp HHHH----HHHHHCS---SEEEEEEESSCCCSTTCTTS-------CCHHHHHCSEEEEECHHHHHHHTSSCC
T ss_pred HHHH----HHHHhCC---cccEEEEeCCccccccchhh-------hHHHHHhCCeeEeecHHHHHhCCCcCC
Confidence 1222 2323222 26899999999864321000 012344566666665555555444444
|
| >2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-25 Score=218.17 Aligned_cols=93 Identities=33% Similarity=0.674 Sum_probs=85.6
Q ss_pred EcccchHHHHHHHhhcCCCCCCCccCceEEEEecCCCCCCceEEEEEEcCCCCCCCcccCCCCCCHHHHHHHHHHHHHHH
Q 000174 892 VSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFEKLEGPVCSSMRLAQQAVCLAACKK 971 (1931)
Q Consensus 892 lt~~~Ai~ll~~yC~~Lp~d~~~~~~P~~~~~~~~~~~~~~~~~~~v~LP~~~p~~~~~g~~~~sk~~Akr~AAf~Ac~~ 971 (1931)
||+++|+++|||||++||+|.|+.++|+|.++++... ...| |+|+||.++|++.++|++|+||++|||+|||+||++
T Consensus 1 lt~~sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~~--~~~~-c~v~LP~~splr~i~g~~~~sk~~AK~sAAf~Ac~~ 77 (102)
T 2kou_A 1 ISGGSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDEF--GGTI-CRITLPANAPISEIESSLLPSTEAAKKDACLKAVHE 77 (102)
T ss_dssp CCCSHHHHHHHHHHTTSSSCTTCCSSCEEEEEECCGG--GCEE-EEEECCTTCSSCCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCCCccccCccceEEEeEeecC--CCeE-EEEECCCCCCCCeeeCCccccHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999998876522 2467 999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCCCCCC
Q 000174 972 LHEMGAFTDMLLPDKG 987 (1931)
Q Consensus 972 L~~~G~ldd~L~P~~~ 987 (1931)
||++|+|||||+|...
T Consensus 78 L~~~G~Ldd~LlP~~~ 93 (102)
T 2kou_A 78 LHNLGVLNDFLLPDSK 93 (102)
T ss_dssp HHHHCSCTTTSCCHHH
T ss_pred HHHCCCCccccCCCCC
Confidence 9999999999999653
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.7e-24 Score=279.58 Aligned_cols=95 Identities=22% Similarity=0.220 Sum_probs=89.6
Q ss_pred eEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhc--CCceEEEEecccccCCCCCCCC
Q 000174 723 RAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRD--GRVTLLVATSVAEEGLDIRQCN 800 (1931)
Q Consensus 723 k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~--G~~~vLVaTdVaeeGlDip~~~ 800 (1931)
..||||.++..++.+++.|.. .++.+..+|| +|++.+|.++++.|++ |+++|||||+++++|||+ +|+
T Consensus 322 g~iIf~~s~~~ie~la~~L~~----~g~~v~~lHG-----~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~ 391 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEI----RGLESAVIYG-----SLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIR 391 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHH----TTCCCEEECT-----TSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBS
T ss_pred CCEEEEcCHHHHHHHHHHHHh----cCCCeeeeec-----cCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-Ccc
Confidence 358999999999999999998 5789999999 9999999999999999 889999999999999999 999
Q ss_pred EEEEcCC--------------CCCHHHHHHhhccCCCCCCc
Q 000174 801 VVIRFDL--------------AKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 801 lVI~fD~--------------p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
+||++|+ |.+..+|+||+|||||.|..
T Consensus 392 ~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~ 432 (677)
T 3rc3_A 392 RIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSR 432 (677)
T ss_dssp EEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSS
T ss_pred EEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCC
Confidence 9999999 88999999999999999954
|
| >3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-24 Score=234.37 Aligned_cols=133 Identities=29% Similarity=0.439 Sum_probs=115.8
Q ss_pred HHHhhhcCCCCChhHHH-HHhccccCCCCCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHHHHHH
Q 000174 1372 IQLKDKINYPVPASKIL-EALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYA 1450 (1931)
Q Consensus 1372 ~~l~~~l~~~~~~~~ll-~AlT~~s~~~~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L~~~a 1450 (1931)
.+|++.|||.|.+..+| +||||+|+....||||||||||+||+++++.+||.+||+.+||.||.+|+.+|||.+|+++|
T Consensus 29 ~~le~~lgy~F~d~~LL~~AlTH~S~~~~~~neRLEfLGDaVL~l~vs~~L~~~~P~~~eg~Lt~~r~~lVs~~~La~ia 108 (170)
T 3o2r_A 29 EKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIA 108 (170)
T ss_dssp HHHHHHHTCCCSSHHHHHHHTBCTTSSTTCCSHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHSSHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHCHHHHHHHH
Confidence 56788899999775555 99999999887899999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccceeccccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCCCCcccc
Q 000174 1451 LSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSSYRVL 1530 (1931)
Q Consensus 1451 ~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1530 (1931)
.++||++||+..+-.. . .....
T Consensus 109 ~~lgL~~~l~~~~~~~-------------------------------------------------~---------~~~~~ 130 (170)
T 3o2r_A 109 NSLNLGDFILMSVAEE-------------------------------------------------N---------NGGKE 130 (170)
T ss_dssp HHTTGGGTCBCCHHHH-------------------------------------------------H---------TTGGG
T ss_pred HHcCcHHhhhcCcchh-------------------------------------------------h---------cCCCC
Confidence 9999999998653000 0 00123
Q ss_pred ccchhhhHHHHHhhheeeccCHHHHHHHHhHh
Q 000174 1531 SSKTLADVVEALIGVYYVEGGKDAANHLMKWI 1562 (1931)
Q Consensus 1531 ~~K~lADvvEALiGA~~l~~G~~~a~~~~~~l 1562 (1931)
.+|++||+|||||||+|+|+|.+.|.+|+..+
T Consensus 131 ~~~ilad~fEAliGAiylD~G~~~a~~~i~~~ 162 (170)
T 3o2r_A 131 KPSILSDALEAIIGAIHLEAGFEFAKTIALRL 162 (170)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 57899999999999999999999999998644
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.8e-23 Score=236.89 Aligned_cols=181 Identities=15% Similarity=0.165 Sum_probs=150.6
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP 359 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP 359 (1931)
.++++.+..+...+.+.+.++..|++||.++++.+++ +|+|++++||+|||++|++++.+.+.. .+.+.++|||+|
T Consensus 24 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~---~~~~~~~lil~P 100 (230)
T 2oxc_A 24 ADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL---ENLSTQILILAP 100 (230)
T ss_dssp CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT---TSCSCCEEEECS
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh---cCCCceEEEEeC
Confidence 4455555444556888999999999999999999998 899999999999999999998765532 234568999999
Q ss_pred ChhHHHHHHHHHHHHc----CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCC
Q 000174 360 KVPLVYQQAEVIREQT----GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDEC 435 (1931)
Q Consensus 360 T~~Lv~Q~~~~l~~~~----~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEa 435 (1931)
|++|+.||+++++.+. ++++..++|+... ..|...+.+++|+|+||++|.+.+.++.+.+.++++||+|||
T Consensus 101 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEa 175 (230)
T 2oxc_A 101 TREIAVQIHSVITAIGIKMEGLECHVFIGGTPL-----SQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEA 175 (230)
T ss_dssp SHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCH-----HHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSH
T ss_pred CHHHHHHHHHHHHHHhcccCCceEEEEeCCCCH-----HHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCc
Confidence 9999999999999874 6889999998653 344455578999999999999999888888999999999999
Q ss_pred CcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 436 H~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
|++.....|...+..+....+. .+++++||||+.
T Consensus 176 h~~~~~~~~~~~~~~i~~~~~~--~~~~l~lSAT~~ 209 (230)
T 2oxc_A 176 DKLLEEGSFQEQINWIYSSLPA--SKQMLAVSATYP 209 (230)
T ss_dssp HHHHSTTSSHHHHHHHHHHSCS--SCEEEEEESCCC
T ss_pred hHhhcCcchHHHHHHHHHhCCC--CCeEEEEEeccC
Confidence 9998864488888877776543 478999999975
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-22 Score=233.54 Aligned_cols=183 Identities=16% Similarity=0.167 Sum_probs=148.2
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK 360 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT 360 (1931)
.|.+.+..+...+.+...++..|++||.++++.+++ +++|++++||+|||++|++++.+.+.. ...+.++|||+||
T Consensus 15 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~---~~~~~~~lil~Pt 91 (220)
T 1t6n_A 15 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP---VTGQVSVLVMCHT 91 (220)
T ss_dssp CSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC---CTTCCCEEEECSC
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc---cCCCEEEEEEeCC
Confidence 345555444455888889999999999999999998 899999999999999999998876542 2234579999999
Q ss_pred hhHHHHHHHHHHHHc----CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCC
Q 000174 361 VPLVYQQAEVIREQT----GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECH 436 (1931)
Q Consensus 361 ~~Lv~Q~~~~l~~~~----~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH 436 (1931)
++|+.||+++++++. ++++..++|+.....+... +. ...++|+|+||++|.+.+.++.+.+.++++||+||||
T Consensus 92 ~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~-~~--~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah 168 (220)
T 1t6n_A 92 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV-LK--KNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 168 (220)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH-HH--HSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHH
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH-Hh--cCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHH
Confidence 999999999999875 7889999998754322111 11 1356999999999999999888889999999999999
Q ss_pred cccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCC
Q 000174 437 HAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 437 ~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
++...+.|...+..+....+. .+++++|||||..
T Consensus 169 ~~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~ 202 (220)
T 1t6n_A 169 KMLEQLDMRRDVQEIFRMTPH--EKQVMMFSATLSK 202 (220)
T ss_dssp HHHSSHHHHHHHHHHHHTSCS--SSEEEEEESCCCT
T ss_pred HHhcccCcHHHHHHHHHhCCC--cCeEEEEEeecCH
Confidence 998766788888877765542 4899999999874
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-22 Score=228.50 Aligned_cols=180 Identities=18% Similarity=0.227 Sum_probs=147.6
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK 360 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT 360 (1931)
+|++.+..+...+.+...++..|+++|.++++.+++ +|+++.+|||+|||++|++++.+.+.. ...+.++|||+||
T Consensus 4 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~---~~~~~~~lil~Pt 80 (206)
T 1vec_A 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL---KKDNIQAMVIVPT 80 (206)
T ss_dssp SGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT---TSCSCCEEEECSC
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcc---cCCCeeEEEEeCc
Confidence 344444444456889999999999999999999998 899999999999999999998765532 2345679999999
Q ss_pred hhHHHHHHHHHHHHc----CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCC
Q 000174 361 VPLVYQQAEVIREQT----GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECH 436 (1931)
Q Consensus 361 ~~Lv~Q~~~~l~~~~----~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH 436 (1931)
++|+.||++.++.+. +..+..++|+.... ........+++|+|+||++|.+.+.++...+.++++||+||||
T Consensus 81 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah 156 (206)
T 1vec_A 81 RELALQVSQICIQVSKHMGGAKVMATTGGTNLR----DDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEAD 156 (206)
T ss_dssp HHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHH----HHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHH
T ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEeCCccHH----HHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChH
Confidence 999999999999875 67888888876532 2233344688999999999999999888889999999999999
Q ss_pred cccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 437 HAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 437 ~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
++.+. .|...+..+....+. .+++++||||+.
T Consensus 157 ~~~~~-~~~~~l~~i~~~~~~--~~~~l~~SAT~~ 188 (206)
T 1vec_A 157 KLLSQ-DFVQIMEDIILTLPK--NRQILLYSATFP 188 (206)
T ss_dssp HHTST-TTHHHHHHHHHHSCT--TCEEEEEESCCC
T ss_pred HhHhh-CcHHHHHHHHHhCCc--cceEEEEEeeCC
Confidence 99874 677777777766543 478999999986
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-22 Score=234.75 Aligned_cols=186 Identities=13% Similarity=0.105 Sum_probs=148.8
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhh------cCCCcEE
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQR------QNKKMLA 354 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~------~~~~~~v 354 (1931)
+|.+.+..+...+.+...++..||++|.++++.+++ +|+|++++||+|||++|++++.+.+..... ...+.++
T Consensus 24 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 103 (253)
T 1wrb_A 24 NFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKC 103 (253)
T ss_dssp SSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSE
T ss_pred CHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceE
Confidence 455555555566788889999999999999999998 899999999999999999998877653210 1223579
Q ss_pred EEEeCChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEE
Q 000174 355 VFLVPKVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLI 431 (1931)
Q Consensus 355 L~LvPT~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV 431 (1931)
|||+||++|+.||+++++.+. ++.+..++|+... ...+.....+++|+|+||++|.+.+.++.+.+.++++||
T Consensus 104 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lV 179 (253)
T 1wrb_A 104 LILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADT----HSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIV 179 (253)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCS----HHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEE
T ss_pred EEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCH----HHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEE
Confidence 999999999999999999865 5788888888653 233444456889999999999999998888899999999
Q ss_pred EeCCCcccCCCcHHHHHHHHHhhc--CCCCCcEEEEEeecCCC
Q 000174 432 LDECHHAVKKHPYSLVMSEFYHTT--SKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 432 ~DEaH~~~~~~~~~~im~~~~~~~--~~~~~p~iLgLTATP~~ 472 (1931)
+||||++.+. .|...+..+.... +....+++++|||||..
T Consensus 180 iDEah~~~~~-~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~ 221 (253)
T 1wrb_A 180 LDEADRMLDM-GFEPQIRKIIEESNMPSGINRQTLMFSATFPK 221 (253)
T ss_dssp EETHHHHHHT-TCHHHHHHHHHSSCCCCGGGCEEEEEESSCCH
T ss_pred EeCHHHHHhC-chHHHHHHHHhhccCCCCCCcEEEEEEEeCCH
Confidence 9999999875 6777777776642 22124789999999863
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.9e-22 Score=232.94 Aligned_cols=183 Identities=14% Similarity=0.107 Sum_probs=148.9
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhh--hcCCCcEEEEEe
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQ--RQNKKMLAVFLV 358 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~--~~~~~~~vL~Lv 358 (1931)
++.+.+..+...+.+.+.++..|+++|.++++.+++ +|+|++++||+|||++|++|+...+.... ....+.++|||+
T Consensus 30 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~ 109 (242)
T 3fe2_A 30 NFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLA 109 (242)
T ss_dssp STTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEEC
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEe
Confidence 344444444455888899999999999999999998 89999999999999999999887765321 123456799999
Q ss_pred CChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCC
Q 000174 359 PKVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDEC 435 (1931)
Q Consensus 359 PT~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEa 435 (1931)
||++|+.|+.+.++.+. ++++..++|+.... ..+.....+++|+|+||++|.+.+.++.+.+.++++||||||
T Consensus 110 Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEa 185 (242)
T 3fe2_A 110 PTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKG----PQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEA 185 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHH----HHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTH
T ss_pred CcHHHHHHHHHHHHHHHhhcCceEEEEECCCChH----HHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCH
Confidence 99999999999988753 78999999987543 233333457899999999999999988888999999999999
Q ss_pred CcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 436 H~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
|++.+. +|...+..+....+. .+++++||||+.
T Consensus 186 h~l~~~-~~~~~~~~i~~~~~~--~~q~~~~SAT~~ 218 (242)
T 3fe2_A 186 DRMLDM-GFEPQIRKIVDQIRP--DRQTLMWSATWP 218 (242)
T ss_dssp HHHHHT-TCHHHHHHHHTTSCS--SCEEEEEESCCC
T ss_pred HHHhhh-CcHHHHHHHHHhCCc--cceEEEEEeecC
Confidence 999884 677777777776543 479999999975
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-22 Score=230.02 Aligned_cols=182 Identities=20% Similarity=0.187 Sum_probs=146.9
Q ss_pred cccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChh
Q 000174 284 ECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVP 362 (1931)
Q Consensus 284 ~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~ 362 (1931)
.+.+..+...+.+.+.++..|++||.++++.+++ +++|++++||+|||++|++++.+.+......+.+.++|||+||++
T Consensus 4 ~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~ 83 (207)
T 2gxq_A 4 KDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRE 83 (207)
T ss_dssp GGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHH
T ss_pred hhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHH
Confidence 3344333455788899999999999999999999 899999999999999999998876542211234567999999999
Q ss_pred HHHHHHHHHHHHc-CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCC
Q 000174 363 LVYQQAEVIREQT-GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKK 441 (1931)
Q Consensus 363 Lv~Q~~~~l~~~~-~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~ 441 (1931)
|+.||+++++.+. .+++..++|+..... .+.....+++|+|+||++|.+.+.++.+.+.++++||+||||++.+.
T Consensus 84 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~ 159 (207)
T 2gxq_A 84 LALQVASELTAVAPHLKVVAVYGGTGYGK----QKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSM 159 (207)
T ss_dssp HHHHHHHHHHHHCTTSCEEEECSSSCSHH----HHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHT
T ss_pred HHHHHHHHHHHHhhcceEEEEECCCChHH----HHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhcc
Confidence 9999999999986 578888998875432 23333468999999999999999988888999999999999999874
Q ss_pred CcHHHHHHHHHhhcCCCCCcEEEEEeecCCC
Q 000174 442 HPYSLVMSEFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 442 ~~~~~im~~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
.|...+..+....+. .+++++||||+..
T Consensus 160 -~~~~~~~~i~~~~~~--~~~~i~~SAT~~~ 187 (207)
T 2gxq_A 160 -GFEEEVEALLSATPP--SRQTLLFSATLPS 187 (207)
T ss_dssp -TCHHHHHHHHHTSCT--TSEEEEECSSCCH
T ss_pred -chHHHHHHHHHhCCc--cCeEEEEEEecCH
Confidence 666777777665432 4789999999863
|
| >1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.7e-22 Score=219.06 Aligned_cols=158 Identities=21% Similarity=0.191 Sum_probs=128.0
Q ss_pred CCCCChHHHHHHHHhhcCCceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 000174 1763 LPMHPVRELQERCQQQAEGLEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEKETAEAKE 1837 (1931)
Q Consensus 1763 ~~~~P~~~L~e~~~~~~~~~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~~ 1837 (1931)
.+.||++.||||||+++..+.|++.. .| +.|+|.|.|+|..+++|.|.|||+|++.||+.||+.|..........
T Consensus 11 ~~~n~ks~LqE~~q~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~~~~~~~p~ 90 (179)
T 1qu6_A 11 SAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKKAVSPL 90 (179)
T ss_dssp SSCSHHHHHHHHHHHHTCCCEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHHSCCSCCSCS
T ss_pred CCCCHHHHHHHHHHhCCCCCeEEEeeccCCCCCCeEEEEEEECCEEEEecCCCCHHHHHHHHHHHHHHHHhcccccCCCc
Confidence 35799999999999999889999754 45 47999999999989999999999999999999999998654321110
Q ss_pred cCCcCCcccCCCCccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHH
Q 000174 1838 KGDENGKKRKNGTQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDS 1917 (1931)
Q Consensus 1838 ~~~~~~~~~~~~~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~ 1917 (1931)
.....+. ..+....|||+.|||+||+++|++ .|++ .+.||+|.+.|+++|+|++..+ +.|.| +|||+||+.
T Consensus 91 ~~~~~~~-~e~~~~~n~~~~L~E~~qk~~~~~-~Y~~-~~~G~~h~~~F~~~v~v~~~~~---~~g~g---~sKK~Ak~~ 161 (179)
T 1qu6_A 91 LLTTTNS-SEGLSMGNYIGLINRIAQKKRLTV-NYEQ-CASGVHGPEGFHYKCKMGQKEY---SIGTG---STKQEAKQL 161 (179)
T ss_dssp SCCCSCS-SCCCCCCCCHHHHHHHHHHSCCEE-EEEE-EEECSSSSSEEEEEEEEETTBC---CEEEE---SSHHHHHHH
T ss_pred cCCCCCc-ccccCCCCHHHHHHHHHHhcCCcc-eEEe-cCcCCCCCCeEEEEEEECCEEE---eeEEE---CCHHHHHHH
Confidence 0000011 112245799999999999999987 7996 5889999999999999986543 48999 999999999
Q ss_pred HHHHHHHHHhhh
Q 000174 1918 AAVLLLELLNKW 1929 (1931)
Q Consensus 1918 AA~~~l~~L~~~ 1929 (1931)
||+.||..|...
T Consensus 162 AA~~al~~L~~~ 173 (179)
T 1qu6_A 162 AAKLAYLQILSE 173 (179)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcc
Confidence 999999999753
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-22 Score=231.45 Aligned_cols=179 Identities=15% Similarity=0.116 Sum_probs=144.1
Q ss_pred ccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCCh
Q 000174 283 QECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKV 361 (1931)
Q Consensus 283 ~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~ 361 (1931)
+.+.+..+...+.+.+.++.+|+++|.++++.+++ +++|++++||+|||++|++++.+.+.. ...+.++|||+||+
T Consensus 6 f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~---~~~~~~~lil~Pt~ 82 (219)
T 1q0u_A 6 FTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP---ERAEVQAVITAPTR 82 (219)
T ss_dssp GGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT---TSCSCCEEEECSSH
T ss_pred HhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh---CcCCceEEEEcCcH
Confidence 44444444455888999999999999999999998 899999999999999999998776542 23456799999999
Q ss_pred hHHHHHHHHHHHHc-------CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeC
Q 000174 362 PLVYQQAEVIREQT-------GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDE 434 (1931)
Q Consensus 362 ~Lv~Q~~~~l~~~~-------~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DE 434 (1931)
+|+.||+++++++. ++.+..++|+.... ..+.....+++|+|+||++|.+.+.++.+.+.++++||+||
T Consensus 83 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDE 158 (219)
T 1q0u_A 83 ELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQ----KALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDE 158 (219)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHH----HTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECS
T ss_pred HHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHH----HHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcC
Confidence 99999999999875 57788888876432 11222224789999999999999998888899999999999
Q ss_pred CCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 435 CHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 435 aH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
||++.+. .|...+..+....+. .+++++||||+.
T Consensus 159 ah~~~~~-~~~~~l~~i~~~~~~--~~~~l~~SAT~~ 192 (219)
T 1q0u_A 159 ADLMLDM-GFITDVDQIAARMPK--DLQMLVFSATIP 192 (219)
T ss_dssp HHHHHHT-TCHHHHHHHHHTSCT--TCEEEEEESCCC
T ss_pred chHHhhh-ChHHHHHHHHHhCCc--ccEEEEEecCCC
Confidence 9999874 566666666665432 478999999985
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.2e-22 Score=231.32 Aligned_cols=181 Identities=17% Similarity=0.248 Sum_probs=148.3
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP 359 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP 359 (1931)
.+|.+.+..+...+.+...++..|++||.++++.+++ +++|++++||+|||++|++++.+.+.. ...+.++|||+|
T Consensus 43 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~---~~~~~~~lil~P 119 (249)
T 3ber_A 43 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLE---TPQRLFALVLTP 119 (249)
T ss_dssp CCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHH---SCCSSCEEEECS
T ss_pred CCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhc---CCCCceEEEEeC
Confidence 3455555555556889999999999999999999998 999999999999999999998876653 234567999999
Q ss_pred ChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhc-ccccccceeEEEEeCC
Q 000174 360 KVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH-SIIKMEAINLLILDEC 435 (1931)
Q Consensus 360 T~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~-~~l~l~~i~lLV~DEa 435 (1931)
|++|+.||+++++.+. ++++..++|+... ...+.....+++|+|+||++|.+.+.+ +.+.+.++++||||||
T Consensus 120 tr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEa 195 (249)
T 3ber_A 120 TRELAFQISEQFEALGSSIGVQSAVIVGGIDS----MSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEA 195 (249)
T ss_dssp SHHHHHHHHHHHHHHHGGGTCCEEEECTTSCH----HHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSH
T ss_pred CHHHHHHHHHHHHHHhccCCeeEEEEECCCCh----HHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcCh
Confidence 9999999999998864 7889999998653 223334447899999999999999876 5567899999999999
Q ss_pred CcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 436 H~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
|++.+. .|...+..+....+. ..++++||||+.
T Consensus 196 h~l~~~-~~~~~l~~i~~~~~~--~~~~l~~SAT~~ 228 (249)
T 3ber_A 196 DRILNM-DFETEVDKILKVIPR--DRKTFLFSATMT 228 (249)
T ss_dssp HHHHHT-TCHHHHHHHHHSSCS--SSEEEEEESSCC
T ss_pred hhhhcc-ChHHHHHHHHHhCCC--CCeEEEEeccCC
Confidence 999875 677777777765543 478999999986
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.5e-22 Score=230.21 Aligned_cols=176 Identities=13% Similarity=0.108 Sum_probs=140.2
Q ss_pred CCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhh---hcCCCcEEEEEeCChhHH
Q 000174 289 VGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQ---RQNKKMLAVFLVPKVPLV 364 (1931)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~---~~~~~~~vL~LvPT~~Lv 364 (1931)
.+...+++.+.++.+||++|.++++.+++ +|+|+.++||+|||++|++|+...+.... ....+.++|||+||++|+
T Consensus 28 ~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~ 107 (228)
T 3iuy_A 28 YPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELA 107 (228)
T ss_dssp CHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHH
Confidence 33455788889999999999999999998 89999999999999999999877654321 123456799999999999
Q ss_pred HHHHHHHHHHc--CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCC
Q 000174 365 YQQAEVIREQT--GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKH 442 (1931)
Q Consensus 365 ~Q~~~~l~~~~--~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~ 442 (1931)
.|++++++.+. ++++..++|+.... ..+.....+++|+|+||++|.+.+.++.+.+.++++|||||||++.+.
T Consensus 108 ~q~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~- 182 (228)
T 3iuy_A 108 LHVEAECSKYSYKGLKSICIYGGRNRN----GQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDM- 182 (228)
T ss_dssp HHHHHHHHHHCCTTCCEEEECC----------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHT-
T ss_pred HHHHHHHHHhcccCceEEEEECCCChH----HHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhcc-
Confidence 99999999974 78888888886543 233344468999999999999999888888999999999999999874
Q ss_pred cHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 443 PYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 443 ~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
.|...+..+....+. .+++++||||+.
T Consensus 183 ~~~~~~~~i~~~~~~--~~~~l~~SAT~~ 209 (228)
T 3iuy_A 183 EFEPQIRKILLDVRP--DRQTVMTSATWP 209 (228)
T ss_dssp TCHHHHHHHHHHSCS--SCEEEEEESCCC
T ss_pred chHHHHHHHHHhCCc--CCeEEEEEeeCC
Confidence 677777777665543 479999999965
|
| >3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.4e-23 Score=235.87 Aligned_cols=133 Identities=29% Similarity=0.432 Sum_probs=115.7
Q ss_pred HHHhhhcCCCCChhHHH-HHhccccCCCCCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHHHHHH
Q 000174 1372 IQLKDKINYPVPASKIL-EALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYA 1450 (1931)
Q Consensus 1372 ~~l~~~l~~~~~~~~ll-~AlT~~s~~~~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L~~~a 1450 (1931)
.+|+++|||.|.+..|| +||||+|+....||||||||||+||+++++.+||.+||+.+||.||.+|+.+|||.+|+++|
T Consensus 29 ~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~neRLefLGDavL~~~v~~~L~~~~p~~~eg~Ls~~r~~lVs~~~La~~a 108 (248)
T 3n3w_A 29 EKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIA 108 (248)
T ss_dssp HHHHHHHTCCCSSHHHHHHHTBCTTSBTTBCSHHHHHHHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHhcCcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCHHHHHHHH
Confidence 56778899999776555 99999999877899999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccceeccccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCCCCcccc
Q 000174 1451 LSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSSYRVL 1530 (1931)
Q Consensus 1451 ~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1530 (1931)
.++||++||+..+-.. . .....
T Consensus 109 ~~lgL~~~l~~~~~e~------------------------------------------------~----------~~g~~ 130 (248)
T 3n3w_A 109 NSLNLGDFILMSVAEE------------------------------------------------N----------NGGKE 130 (248)
T ss_dssp HHTTGGGTCBCCHHHH------------------------------------------------H----------TTGGG
T ss_pred HHcCcHHHhhcCchhh------------------------------------------------h----------cCCCC
Confidence 9999999998643000 0 00123
Q ss_pred ccchhhhHHHHHhhheeeccCHHHHHHHHhHh
Q 000174 1531 SSKTLADVVEALIGVYYVEGGKDAANHLMKWI 1562 (1931)
Q Consensus 1531 ~~K~lADvvEALiGA~~l~~G~~~a~~~~~~l 1562 (1931)
.+|.+||+|||||||+|+|+|.+.|..|+..+
T Consensus 131 ~~~~lad~fEAliGAiyld~G~~~~~~~i~~~ 162 (248)
T 3n3w_A 131 KPSILSDALEAIIGAIHLEAGFEFAKTIALRL 162 (248)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHCChHHHHHHHHHH
Confidence 57899999999999999999999999998654
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-20 Score=238.15 Aligned_cols=122 Identities=16% Similarity=0.178 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCce
Q 000174 703 TPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVT 782 (1931)
Q Consensus 703 s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~ 782 (1931)
..|...+++.+... ...+.++||||+++..++.|+..|.. .++++..+|| ++.++++..+.++|+.| .
T Consensus 457 ~eK~~al~~~I~~~-~~~gqpVLVFt~S~e~sE~Ls~~L~~----~Gi~~~vLhg-----kq~~rE~~ii~~ag~~g--~ 524 (822)
T 3jux_A 457 KEKYEKIVEEIEKR-YKKGQPVLVGTTSIEKSELLSSMLKK----KGIPHQVLNA-----KYHEKEAEIVAKAGQKG--M 524 (822)
T ss_dssp HHHHHHHHHHHHHH-HHHTCCEEEEESSHHHHHHHHHHHHT----TTCCCEEECS-----CHHHHHHHHHHHHHSTT--C
T ss_pred HHHHHHHHHHHHHH-hhCCCCEEEEECCHHHHHHHHHHHHH----CCCCEEEeeC-----CchHHHHHHHHhCCCCC--e
Confidence 45888888888764 22356899999999999999999998 6899999999 76666666666677766 6
Q ss_pred EEEEecccccCCCCC--------CCCEEEEcCCCCCHHHHHHhhccCCCCCCcE--EEEEecCC
Q 000174 783 LLVATSVAEEGLDIR--------QCNVVIRFDLAKTVLAYIQSRGRARKPGSDY--ILMIERGN 836 (1931)
Q Consensus 783 vLVaTdVaeeGlDip--------~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~--ivlv~~~~ 836 (1931)
|||||++|+||+||+ +..+||+||+|.+...|+||+|||||.|..+ ++++..++
T Consensus 525 VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 525 VTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp EEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred EEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 999999999999998 6679999999999999999999999999884 45666555
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=99.87 E-value=9.8e-22 Score=226.72 Aligned_cols=181 Identities=15% Similarity=0.118 Sum_probs=141.8
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP 359 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP 359 (1931)
..+.+.+..+...+.+.+.++..|++||.++++.+++ +|+|++++||+|||++|++++.+.+.. ...+.++|||+|
T Consensus 14 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~---~~~~~~~lil~P 90 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT---SVKAPQALMLAP 90 (224)
T ss_dssp CCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT---TCCSCCEEEECS
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhc---cCCCceEEEEEC
Confidence 3455555444455788889999999999999999998 899999999999999999998766542 234568999999
Q ss_pred ChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCC
Q 000174 360 KVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECH 436 (1931)
Q Consensus 360 T~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH 436 (1931)
|++|+.||+++++.+. ++++..++|+..... ....+..++|+|+||++|.+.+.++.+.+.++++|||||||
T Consensus 91 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah 165 (224)
T 1qde_A 91 TRELALQIQKVVMALAFHMDIKVHACIGGTSFVE-----DAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD 165 (224)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEECC---------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH
T ss_pred CHHHHHHHHHHHHHHhcccCceEEEEeCCcchHH-----HHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChh
Confidence 9999999999999864 678888888765322 11223458999999999999999888889999999999999
Q ss_pred cccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCC
Q 000174 437 HAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 437 ~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
++... .|...+..+....+. .+++++||||+..
T Consensus 166 ~~~~~-~~~~~l~~i~~~~~~--~~~~i~lSAT~~~ 198 (224)
T 1qde_A 166 EMLSS-GFKEQIYQIFTLLPP--TTQVVLLSATMPN 198 (224)
T ss_dssp HHHHT-TCHHHHHHHHHHSCT--TCEEEEEESSCCH
T ss_pred HHhhh-hhHHHHHHHHHhCCc--cCeEEEEEeecCH
Confidence 99874 566666666665432 4889999999863
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.6e-22 Score=230.15 Aligned_cols=181 Identities=18% Similarity=0.153 Sum_probs=140.4
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP 359 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP 359 (1931)
.+|++.+..+...+.+...++..|+++|.++++.+++ +|+|++++||+|||++|++++.+.+.. ...+.++|||+|
T Consensus 30 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~---~~~~~~~lil~P 106 (237)
T 3bor_A 30 DNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI---EFKETQALVLAP 106 (237)
T ss_dssp CSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCT---TSCSCCEEEECS
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh---cCCCceEEEEEC
Confidence 3455555444455788889999999999999999998 899999999999999999998776542 234567999999
Q ss_pred ChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCC-ccEEEEcHHHHHHHHhcccccccceeEEEEeCC
Q 000174 360 KVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDT-KQVLVMTAQILLNILRHSIIKMEAINLLILDEC 435 (1931)
Q Consensus 360 T~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~-~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEa 435 (1931)
|++|+.||+++++.+. ++.+..++|+.... ..+.....+ ++|+|+||++|.+.+.++.+.+.++++||||||
T Consensus 107 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEa 182 (237)
T 3bor_A 107 TRELAQQIQKVILALGDYMGATCHACIGGTNVR----NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEA 182 (237)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECC-----------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESH
T ss_pred cHHHHHHHHHHHHHHhhhcCceEEEEECCCchH----HHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCc
Confidence 9999999999999875 57788888876532 223333333 899999999999999988888999999999999
Q ss_pred CcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 436 H~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
|++.+. .|...+..++...+ ..+++++||||+.
T Consensus 183 h~~~~~-~~~~~l~~i~~~~~--~~~~~i~~SAT~~ 215 (237)
T 3bor_A 183 DEMLSR-GFKDQIYEIFQKLN--TSIQVVLLSATMP 215 (237)
T ss_dssp HHHHHT-TCHHHHHHHHHHSC--TTCEEEEECSSCC
T ss_pred hHhhcc-CcHHHHHHHHHhCC--CCCeEEEEEEecC
Confidence 999874 56666666666543 3489999999986
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-21 Score=226.85 Aligned_cols=182 Identities=18% Similarity=0.231 Sum_probs=144.4
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhh-hcCCCcEEEEEeC
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQ-RQNKKMLAVFLVP 359 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~-~~~~~~~vL~LvP 359 (1931)
++.+.+..+...+.+.+.++..|+++|.++++.+++ +++|++++||+|||++|++|+.+.+.... ....+.++|||+|
T Consensus 26 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~P 105 (236)
T 2pl3_A 26 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISP 105 (236)
T ss_dssp BGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECS
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeC
Confidence 344444444455888899999999999999999998 99999999999999999999887765321 1123567999999
Q ss_pred ChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcc-cccccceeEEEEeCC
Q 000174 360 KVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS-IIKMEAINLLILDEC 435 (1931)
Q Consensus 360 T~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~-~l~l~~i~lLV~DEa 435 (1931)
|++|+.||+++++.+. ++++..++|+..... ....+.+++|+|+||++|.+.+.+. .+.+.++++||+|||
T Consensus 106 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEa 180 (236)
T 2pl3_A 106 TRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKH-----EAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEA 180 (236)
T ss_dssp SHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHH-----HHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTH
T ss_pred CHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHH-----HHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeCh
Confidence 9999999999999875 578999999865422 2223368999999999999988764 467889999999999
Q ss_pred CcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 436 H~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
|++.+. .|...+..++...+. .+++++||||+.
T Consensus 181 h~~~~~-~~~~~~~~i~~~~~~--~~~~l~~SAT~~ 213 (236)
T 2pl3_A 181 DRILDM-GFADTMNAVIENLPK--KRQTLLFSATQT 213 (236)
T ss_dssp HHHHHT-TTHHHHHHHHHTSCT--TSEEEEEESSCC
T ss_pred HHHhcC-CcHHHHHHHHHhCCC--CCeEEEEEeeCC
Confidence 999874 677777777766543 478999999986
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-21 Score=233.67 Aligned_cols=180 Identities=17% Similarity=0.111 Sum_probs=147.7
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc---cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEE
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK---KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFL 357 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~---~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~L 357 (1931)
.+|.+.+..+...+.+..+++..|+++|.++++.++. +|+|++++||||||++|++|+.+.+.. .....++|||
T Consensus 92 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~---~~~~~~~lil 168 (300)
T 3fmo_B 92 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP---ANKYPQCLCL 168 (300)
T ss_dssp CCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCT---TSCSCCEEEE
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhc---cCCCceEEEE
Confidence 4455555555566889999999999999999999987 799999999999999999998876542 2345679999
Q ss_pred eCChhHHHHHHHHHHHHc----CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhc-ccccccceeEEEE
Q 000174 358 VPKVPLVYQQAEVIREQT----GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH-SIIKMEAINLLIL 432 (1931)
Q Consensus 358 vPT~~Lv~Q~~~~l~~~~----~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~-~~l~l~~i~lLV~ 432 (1931)
+||++|+.|++++++.+. ++.+..+.|+..... .....++|+|+||++|++++.+ +.+.+.++++|||
T Consensus 169 ~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVl 241 (300)
T 3fmo_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-------GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (300)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCT-------TCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEE
T ss_pred cCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhh-------hhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEE
Confidence 999999999999999864 577888888765321 1135789999999999999966 6778999999999
Q ss_pred eCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCC
Q 000174 433 DECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 433 DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
||||++.+...|...+..+....+. .++++++|||+..
T Consensus 242 DEad~l~~~~~~~~~~~~i~~~~~~--~~q~i~~SAT~~~ 279 (300)
T 3fmo_B 242 DEADVMIATQGHQDQSIRIQRMLPR--NCQMLLFSATFED 279 (300)
T ss_dssp TTHHHHHHSTTHHHHHHHHHTTSCT--TCEEEEEESCCCH
T ss_pred eCHHHHhhccCcHHHHHHHHHhCCC--CCEEEEEeccCCH
Confidence 9999999756888888888776543 4899999999863
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-21 Score=231.03 Aligned_cols=174 Identities=17% Similarity=0.195 Sum_probs=143.5
Q ss_pred chhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhh-cCCCcEEEEEeCChhHHHHHHH
Q 000174 292 KSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQR-QNKKMLAVFLVPKVPLVYQQAE 369 (1931)
Q Consensus 292 ~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~-~~~~~~vL~LvPT~~Lv~Q~~~ 369 (1931)
..+.+...++..|+++|.++++.++. +|+|++++||||||++|++++.+.+..... ...+.++|||+||++|+.|+++
T Consensus 65 l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~ 144 (262)
T 3ly5_A 65 TLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFG 144 (262)
T ss_dssp HHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHH
Confidence 44788889999999999999999998 899999999999999999999887765321 1235679999999999999999
Q ss_pred HHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcc-cccccceeEEEEeCCCcccCCCcHH
Q 000174 370 VIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS-IIKMEAINLLILDECHHAVKKHPYS 445 (1931)
Q Consensus 370 ~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~-~l~l~~i~lLV~DEaH~~~~~~~~~ 445 (1931)
++++++ +..+..++|+... ...+.....+++|+|+||++|.+++... .+.+.++++|||||||++.+. +|.
T Consensus 145 ~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~-~~~ 219 (262)
T 3ly5_A 145 VLKELMTHHVHTYGLIMGGSNR----SAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDV-GFE 219 (262)
T ss_dssp HHHHHTTTCCSCEEEECSSSCH----HHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHT-TCH
T ss_pred HHHHHHhhcCceEEEEECCCCH----HHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhh-hHH
Confidence 999865 5778888887653 3344444467999999999999988764 367899999999999999884 677
Q ss_pred HHHHHHHhhcCCCCCcEEEEEeecCCC
Q 000174 446 LVMSEFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 446 ~im~~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
..+..+....+. .+++++||||+..
T Consensus 220 ~~l~~i~~~~~~--~~q~l~~SAT~~~ 244 (262)
T 3ly5_A 220 EELKQIIKLLPT--RRQTMLFSATQTR 244 (262)
T ss_dssp HHHHHHHHHSCS--SSEEEEECSSCCH
T ss_pred HHHHHHHHhCCC--CCeEEEEEecCCH
Confidence 777777776543 4899999999863
|
| >3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-22 Score=228.06 Aligned_cols=133 Identities=26% Similarity=0.400 Sum_probs=107.7
Q ss_pred HHhhhcCCC-CChhHHH-HHhccccCCC-----------CCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhh
Q 000174 1373 QLKDKINYP-VPASKIL-EALTAASCQE-----------TFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQ 1439 (1931)
Q Consensus 1373 ~l~~~l~~~-~~~~~ll-~AlT~~s~~~-----------~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~ 1439 (1931)
.++..|||+ |.+..|| +||||+|+.. ..||||||||||+||+++++.|||.+||+.+||.||.+|+.
T Consensus 87 ~lE~~lgY~~F~d~~LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDaVL~l~vs~~L~~~~P~~~eG~Lt~lRs~ 166 (246)
T 3rv1_A 87 DVDMFIKYPVVYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKES 166 (246)
T ss_dssp GGGGGCSSCCCSCHHHHHHTTCCCC--------------CCCSHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred HHHHhcCCCCcCCHHHHHHHHcCCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Confidence 467889999 8877666 9999999853 36999999999999999999999999999999999999999
Q ss_pred hhccHHHHHHHHHcCCccceeccccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCc
Q 000174 1440 MVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGE 1519 (1931)
Q Consensus 1440 lVsN~~L~~~a~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1519 (1931)
+|||.+|+++|+++||++||+... +++..
T Consensus 167 lVsn~~La~iA~~lgL~~~l~~~~-------g~~~~-------------------------------------------- 195 (246)
T 3rv1_A 167 IVNNNNLFDWSTKLNFTKRLQGNI-------ATPTR-------------------------------------------- 195 (246)
T ss_dssp HHSHHHHHHHHHHTTSHHHHCSSC-------C------------------------------------------------
T ss_pred HhCHHHHHHHHHHCCcHHHHhhcC-------CHhhh--------------------------------------------
Confidence 999999999999999999998531 11000
Q ss_pred ccCCCCCccccccchhhhHHHHHhhheeecc-C--HHHHHHHHhHh
Q 000174 1520 LEGDSSSYRVLSSKTLADVVEALIGVYYVEG-G--KDAANHLMKWI 1562 (1931)
Q Consensus 1520 ~~~~~~~~~~~~~K~lADvvEALiGA~~l~~-G--~~~a~~~~~~l 1562 (1931)
......+|.+||+|||+|||+|+|+ | .+.+..|+..+
T Consensus 196 ------~~~~~~~~ilAD~fEAlIGAIylD~~g~~l~~v~~~l~~L 235 (246)
T 3rv1_A 196 ------VVKDKMSKRYADCVQAYIGALVIDRFGTEFLDIKEWLEEL 235 (246)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHCSSTTHHHHHHHHHH
T ss_pred ------ccCcccccHHHHHHHHHHHHHhHcCCCCCHHHHHHHHHHH
Confidence 0011247899999999999999998 4 88888887554
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-20 Score=248.63 Aligned_cols=104 Identities=26% Similarity=0.335 Sum_probs=96.4
Q ss_pred CCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCC
Q 000174 720 EDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQC 799 (1931)
Q Consensus 720 ~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~ 799 (1931)
.+.++||||+++.+++.|++.|.+ .++++..+|| ++++.+|.+++++|++|+++|||||+++++|+|+|+|
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~----~gi~~~~lh~-----~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v 508 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVE----HGIRARYLHH-----ELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEV 508 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECT-----TCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTE
T ss_pred cCCEEEEEECCHHHHHHHHHHHHh----cCCCceeecC-----CCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCC
Confidence 357999999999999999999998 5789999999 9999999999999999999999999999999999999
Q ss_pred CEEEEcCC-----CCCHHHHHHhhccCCCCCCcEEEEE
Q 000174 800 NVVIRFDL-----AKTVLAYIQSRGRARKPGSDYILMI 832 (1931)
Q Consensus 800 ~lVI~fD~-----p~s~~~yiQr~GRa~R~Gs~~ivlv 832 (1931)
++||+||. |++..+|+||+|||||.+...++++
T Consensus 509 ~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~ 546 (664)
T 1c4o_A 509 SLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLY 546 (664)
T ss_dssp EEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTCEEEEE
T ss_pred CEEEEeCCcccCCCCCHHHHHHHHCccCcCCCCEEEEE
Confidence 99999998 9999999999999999876544444
|
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-23 Score=271.29 Aligned_cols=164 Identities=20% Similarity=0.244 Sum_probs=140.2
Q ss_pred HhcCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHHHHHHHHHcCchhhhccCCchhH
Q 000174 1612 AITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALD 1691 (1931)
Q Consensus 1612 AlTH~S~~~~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~La~~a~~~gl~~~l~~~~~~~~ 1691 (1931)
||||+||... .+||||||||||||+++|++|||.+||++++|.||.+|+++|||++||.+|+++||++||+.+..+.
T Consensus 322 AlTh~s~~~~--~nnERLEfLGDavL~~~vs~~L~~~~P~~~eG~Ls~lRs~lVsn~~La~~A~~lgL~~~l~~~~~e~- 398 (756)
T 2qvw_A 322 PFGPFGVSHT--DVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLPQLAEFSNNLV- 398 (756)
T ss_dssp ECBGGGBCHH--HHHHHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHSHHHHHHHHHHTTCTTTCBCCSCC--
T ss_pred hcccccccCC--CCcHHHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCchHHHHHHHHcChHHHhccCCCCC-
Confidence 9999998543 6899999999999999999999999999999999999999999999999999999999999877642
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhcc-ccCCceeEEeeeccCCCCCCCCCC---CCCCC
Q 000174 1692 RQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLD-SGRDTSVVWQVFQPLLDPMVTPET---LPMHP 1767 (1931)
Q Consensus 1692 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylD-sg~~~~~v~~~~~~~l~~~i~~~~---~~~~P 1767 (1931)
..+|+++|+|||+|||||+| +|++ .+++|+.+++.+.+.... ..++|
T Consensus 399 ---------------------------~~~~ilaD~~EAliGAiylD~~G~~--~a~~~v~~~~~~~~~~~~~~~~~~Dp 449 (756)
T 2qvw_A 399 ---------------------------AKSKTWADMYEEIVGSIFTGPNGIY--GCEEFLAKTLMSPEHSKTVGSACPDA 449 (756)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHSTTHHH--HHHHHHHHHHBCGGGSCC---CCCHH
T ss_pred ---------------------------CcccHHHhHHHHHhCcccccccChH--HHHHHHHHHHHhhhhcccccccccCc
Confidence 35899999999999999999 9976 567888888887765432 35788
Q ss_pred -hHHHHHHHHhhcCCceeEEeccCCeEEEEEEECCEEEEEeecCCHHHHH---------HHHHHHHHHHHHhhh
Q 000174 1768 -VRELQERCQQQAEGLEYKASRSGNLATVEVYIDGVQVGVAQNPQKKMAQ---------KLAARNALAVLKEKE 1831 (1931)
Q Consensus 1768 -~~~L~e~~~~~~~~~~y~~~~~g~~f~v~V~v~g~~~~~g~g~skk~Ak---------~~AA~~AL~~L~~~~ 1831 (1931)
++.|||++|.++ ++.|.+.+.+.|| .+||+.||++|++..
T Consensus 450 ~Kt~LqE~~q~~~------------------------ia~~v~~~~~~ak~~~~~~~~~~~aa~~aL~~l~~~~ 499 (756)
T 2qvw_A 450 VTKASKRVCMGEA------------------------GAHEFRSLVDYACEQGISVFCSSRVSTMFLERLRDIP 499 (756)
T ss_dssp HHHHHHHHHTSCC------------------------CHHHHHHHHHHTTTTTCCCBSSSHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHhccc------------------------hhhhhhhhhhHHhhhccccchhhHHHHHHHHhhcccc
Confidence 999999998543 2455566677787 789999999998754
|
| >3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-21 Score=230.75 Aligned_cols=90 Identities=32% Similarity=0.546 Sum_probs=82.8
Q ss_pred HHHhhhcCCCCChh-HHHHHhccccCCCC---CCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHHH
Q 000174 1372 IQLKDKINYPVPAS-KILEALTAASCQET---FCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLY 1447 (1931)
Q Consensus 1372 ~~l~~~l~~~~~~~-~ll~AlT~~s~~~~---~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L~ 1447 (1931)
.+|++.|||+|.+. +|.+||||+|+... .|||||||||||||+++++.|||.+||+.+||.||.+|+.+|||.+|+
T Consensus 16 ~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~~~~neRLEfLGDaVL~l~v~~~L~~~~p~~~~g~Lt~lrs~lV~~~~La 95 (265)
T 3c4b_A 16 ETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFA 95 (265)
T ss_dssp HHHHHHHTCCCSSHHHHHHHHBCTTCTTCCSSCCSHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHSSHHHHH
T ss_pred HHHHHHhCCccCCHHHHHHHhcCcCcCCCCCCCchHhHHHHhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhHHHH
Confidence 46788899999765 45599999999643 599999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCccceec
Q 000174 1448 QYALSKGLQSYIQA 1461 (1931)
Q Consensus 1448 ~~a~~~gL~~~i~~ 1461 (1931)
.+|+++||+.||+.
T Consensus 96 ~~a~~lgl~~~l~~ 109 (265)
T 3c4b_A 96 SLAVKYDYHKYFKA 109 (265)
T ss_dssp HHHHHTTGGGTCBC
T ss_pred HHHHHcChHHHHHh
Confidence 99999999999975
|
| >2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A | Back alignment and structure |
|---|
Probab=99.85 E-value=8.9e-22 Score=224.55 Aligned_cols=128 Identities=29% Similarity=0.452 Sum_probs=113.6
Q ss_pred HHHhhhcCCCCChhHHH-HHhccccCCCCCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHHHHHH
Q 000174 1372 IQLKDKINYPVPASKIL-EALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYA 1450 (1931)
Q Consensus 1372 ~~l~~~l~~~~~~~~ll-~AlT~~s~~~~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L~~~a 1450 (1931)
.+|++.|||.|.+..+| +||||+|+....||||||||||+||+++++.|||.+||+.+||.||.+|+.+|||.+|+.+|
T Consensus 5 ~~l~~~lg~~f~~~~ll~~AlTh~S~~~~~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~~~la~~a 84 (221)
T 2nug_A 5 EQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLA 84 (221)
T ss_dssp HHHHHHHTCCCSSHHHHHHHHBCTTTCSSSCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHhCCCcCCHHHHHHHhCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCHHHHHHHH
Confidence 46888999999765544 99999999877899999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccceeccccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCCCCcccc
Q 000174 1451 LSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSSYRVL 1530 (1931)
Q Consensus 1451 ~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1530 (1931)
.++||+.||+..+.. .
T Consensus 85 ~~l~l~~~l~~~~~~----------------------------------------------------------------~ 100 (221)
T 2nug_A 85 QKLELHKFIRIKRGK----------------------------------------------------------------I 100 (221)
T ss_dssp HTTTGGGTCBSCTTC----------------------------------------------------------------C
T ss_pred HHcChHHhhccCCCc----------------------------------------------------------------c
Confidence 999999999754300 0
Q ss_pred ccchhhhHHHHHhhheeeccCHHH--HHHHHhHhh
Q 000174 1531 SSKTLADVVEALIGVYYVEGGKDA--ANHLMKWIG 1563 (1931)
Q Consensus 1531 ~~K~lADvvEALiGA~~l~~G~~~--a~~~~~~l~ 1563 (1931)
.+|.+||+|||||||+|+|+|.+. +..|+..+-
T Consensus 101 ~~~~lad~~EAliGAiyld~g~~~~~~~~~i~~~~ 135 (221)
T 2nug_A 101 NETIIGDVFEALWAAVYIDSGRDANFTRELFYKLF 135 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 168999999999999999999988 998886543
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-20 Score=215.79 Aligned_cols=169 Identities=31% Similarity=0.443 Sum_probs=127.7
Q ss_pred hcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHH-HHHHHHHH
Q 000174 297 EKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQ-QAEVIREQ 374 (1931)
Q Consensus 297 ~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q-~~~~l~~~ 374 (1931)
......+|++||.++++.+++ +++|+.++||+|||+++++++.+.+..........++|||+|+++|+.| |.+.++.+
T Consensus 27 ~~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 27 SPEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp CCSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred CccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 335567899999999999998 8999999999999999999998877654333445689999999999999 88888887
Q ss_pred c--CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhccc------ccccceeEEEEeCCCcccCCCcHHH
Q 000174 375 T--GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSI------IKMEAINLLILDECHHAVKKHPYSL 446 (1931)
Q Consensus 375 ~--~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~------l~l~~i~lLV~DEaH~~~~~~~~~~ 446 (1931)
. ++++..++|+..... .|......++|+|+||+.|.+.+.... +.+.++++|||||||++.....|..
T Consensus 107 ~~~~~~v~~~~g~~~~~~----~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~ 182 (216)
T 3b6e_A 107 LKKWYRVIGLSGDTQLKI----SFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNN 182 (216)
T ss_dssp HTTTSCEEECCC---CCC----CHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHH
T ss_pred hccCceEEEEeCCcccch----hHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHH
Confidence 6 578888888765432 333344578999999999999887743 5678999999999999988768888
Q ss_pred HHHHHHhhc-----------CCCCCcEEEEEeec
Q 000174 447 VMSEFYHTT-----------SKEKRPSVFGMTAS 469 (1931)
Q Consensus 447 im~~~~~~~-----------~~~~~p~iLgLTAT 469 (1931)
++..+.... +....+++|+||||
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 183 IMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 887776543 11245899999998
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.9e-21 Score=224.99 Aligned_cols=173 Identities=16% Similarity=0.209 Sum_probs=136.5
Q ss_pred chhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHH
Q 000174 292 KSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEV 370 (1931)
Q Consensus 292 ~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~ 370 (1931)
..+.+.+.++..||++|.++++.+++ +++|+.++||+|||++|++++.+.+... ...+.++|||+||++|+.||+++
T Consensus 40 l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~--~~~~~~~lil~Pt~~L~~q~~~~ 117 (245)
T 3dkp_A 40 LLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQP--ANKGFRALIISPTRELASQIHRE 117 (245)
T ss_dssp HHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSC--CSSSCCEEEECSSHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhc--ccCCceEEEEeCCHHHHHHHHHH
Confidence 44778889999999999999999998 8999999999999999999988766421 23456799999999999999999
Q ss_pred HHHHc---CCcEEEEeCCCcccccchHHH-HhhcCCccEEEEcHHHHHHHHhcc--cccccceeEEEEeCCCcccCC--C
Q 000174 371 IREQT---GYVVGHYCGEMGQDFWDAQRW-QREFDTKQVLVMTAQILLNILRHS--IIKMEAINLLILDECHHAVKK--H 442 (1931)
Q Consensus 371 l~~~~---~l~v~~~~G~~~~~~~~~~~w-~~~~~~~~IlV~Tpq~L~d~L~~~--~l~l~~i~lLV~DEaH~~~~~--~ 442 (1931)
+++++ ++++..++|+.... ..+ .....+++|+|+||++|.+.+.+. .+.+.++++|||||||++... .
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~ 193 (245)
T 3dkp_A 118 LIKISEGTGFRIHMIHKAAVAA----KKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKT 193 (245)
T ss_dssp HHHHTTTSCCCEECCCHHHHHH----TTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--
T ss_pred HHHHhcccCceEEEEecCccHH----HHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccc
Confidence 99875 56676666543211 111 112357899999999999999876 467899999999999999863 3
Q ss_pred cHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 443 PYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 443 ~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
.|...+..++..... ...++++||||+.
T Consensus 194 ~~~~~~~~i~~~~~~-~~~~~~~~SAT~~ 221 (245)
T 3dkp_A 194 GFRDQLASIFLACTS-HKVRRAMFSATFA 221 (245)
T ss_dssp CHHHHHHHHHHHCCC-TTCEEEEEESSCC
T ss_pred cHHHHHHHHHHhcCC-CCcEEEEEeccCC
Confidence 677777777654322 3478999999975
|
| >2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.3e-21 Score=215.31 Aligned_cols=157 Identities=24% Similarity=0.208 Sum_probs=118.3
Q ss_pred CCCCChHHHHHHHHhhcCC-ceeEEec-cC--CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhhhhhhc-
Q 000174 1763 LPMHPVRELQERCQQQAEG-LEYKASR-SG--NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEKETAEAKE- 1837 (1931)
Q Consensus 1763 ~~~~P~~~L~e~~~~~~~~-~~y~~~~-~g--~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~~- 1837 (1931)
..++|++.||||||+++.. +.|++.. .| +.|+|.|.|+|..++.|.|.|||+|++.||+.||..|..........
T Consensus 20 ~~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~aL~~L~~~~~~~~~~~ 99 (232)
T 2yt4_A 20 NGKSEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPDFVKQTSEE 99 (232)
T ss_dssp TTSCHHHHHHHHHHHTTCCCCEEEEEECSCTTSCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHSTTTTTC----
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCcEEEEEEECCEEEeecCCCCHHHHHHHHHHHHHHHHHhhccccCCcc
Confidence 3579999999999999876 6999754 44 58999999999999999999999999999999999997641110000
Q ss_pred --cCCcC----C--cccC--------CCCccchHHHHHHHHHHcCCCCCcce--eecccCCCCCceeEEEEEEEecCCCc
Q 000174 1838 --KGDEN----G--KKRK--------NGTQTFTRQTLNDICLRRNWPMPLYR--CVREGGPAHAKRFTYAVRVNTTDKGW 1899 (1931)
Q Consensus 1838 --~~~~~----~--~~~~--------~~~~~n~~~~L~e~~~~~~~~~p~y~--~~~~~Gp~h~~~F~~~~~v~~~~~~~ 1899 (1931)
..... . .... .....||++.||| |++++|++|.|+ ++.+.||+|.+.|+++|. ..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~kt~LqE-~~~~~~~~p~Y~~~~~~~~Gp~h~~~F~~~v~------~~ 172 (232)
T 2yt4_A 100 KPKDSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHE-CLKRNHGMGDTSIKFEVVPGKNQKSEYVMACG------KH 172 (232)
T ss_dssp ----CCGGGGGGGSBTTCTTHHHHHHHHTCCCHHHHHHH-HHHTSSSCCCEEEECC------CCEEEEEEET------TE
T ss_pred ccccccchhhcccccccCCcccccccccCCCChhHHHHH-HHHcCCCCCceEEEEeecCCCCCCCEEEEEEE------EE
Confidence 00000 0 0000 0123589999999 999999999999 888899999999999886 33
Q ss_pred ceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1900 TDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1900 ~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
.+.|.| +|||+||+.||+.||+.|...
T Consensus 173 ~~~G~G---~sKK~Aeq~AA~~aL~~L~~~ 199 (232)
T 2yt4_A 173 TVRGWC---KNKRVGKQLASQKILQLLHPH 199 (232)
T ss_dssp EEEEEE---SSHHHHHHHHHHHHHHHHSTT
T ss_pred EEEEEe---CCHHHHHHHHHHHHHHHHHhh
Confidence 568999 999999999999999999764
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-19 Score=239.56 Aligned_cols=107 Identities=24% Similarity=0.319 Sum_probs=96.9
Q ss_pred CCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCC
Q 000174 720 EDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQC 799 (1931)
Q Consensus 720 ~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~ 799 (1931)
.+.++||||+++..++.|++.|.+ .++++..+|| ++++.+|.+++++|++|+++|||||+++++|+|+|+|
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~----~gi~~~~lh~-----~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v 514 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKE----IGIKVNYLHS-----EIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEV 514 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECT-----TCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHh----cCCCeEEEeC-----CCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCC
Confidence 457999999999999999999998 5789999999 9999999999999999999999999999999999999
Q ss_pred CEEEEcCC-----CCCHHHHHHhhccCCCCCCc-EEEEEecC
Q 000174 800 NVVIRFDL-----AKTVLAYIQSRGRARKPGSD-YILMIERG 835 (1931)
Q Consensus 800 ~lVI~fD~-----p~s~~~yiQr~GRa~R~Gs~-~ivlv~~~ 835 (1931)
++||+||. |.+..+|+||+|||||.+.. .++++...
T Consensus 515 ~lVi~~d~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~ 556 (661)
T 2d7d_A 515 SLVAILDADKEGFLRSERSLIQTIGRAARNAEGRVIMYADKI 556 (661)
T ss_dssp EEEEETTTTCCTTTTSHHHHHHHHHTTTTSTTCEEEEECSSC
T ss_pred CEEEEeCcccccCCCCHHHHHHHhCcccCCCCCEEEEEEeCC
Confidence 99999998 99999999999999998544 33344433
|
| >2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-21 Score=225.90 Aligned_cols=133 Identities=29% Similarity=0.385 Sum_probs=113.4
Q ss_pred HHHhhhcCCCCChhHHHHHhccccCCC----CCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHHH
Q 000174 1372 IQLKDKINYPVPASKILEALTAASCQE----TFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLY 1447 (1931)
Q Consensus 1372 ~~l~~~l~~~~~~~~ll~AlT~~s~~~----~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L~ 1447 (1931)
.+|++.|||+|+..++.+||||+|+.. ..||||||||||+||+++++.|||.+||+.+||.||.+|+.+|||.+|+
T Consensus 8 ~~l~~~lgy~f~~~ll~~AlTH~S~~~~~~~~~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~~~la 87 (242)
T 2a11_A 8 QPLLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQALA 87 (242)
T ss_dssp HHHHHHHTSCCCHHHHHHHTBCHHHHHHTTSCCCTHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHhCCcCccccCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCHHHHH
Confidence 467888999995566669999999842 4699999999999999999999999999999999999999999999999
Q ss_pred HHHHHc---CCccceeccccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCC
Q 000174 1448 QYALSK---GLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDS 1524 (1931)
Q Consensus 1448 ~~a~~~---gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1524 (1931)
++|.++ ||++||+..+-.. . .+
T Consensus 88 ~~a~~l~~~gL~~~l~~~~~e~------------------------------------------------~-~~------ 112 (242)
T 2a11_A 88 DVARRLCAEGLGVHVLLGRGEA------------------------------------------------N-TG------ 112 (242)
T ss_dssp HHHHHHSSSCSGGGCBCCHHHH------------------------------------------------H-TT------
T ss_pred HHHHHhhhhChHHHhhcCchhh------------------------------------------------h-cC------
Confidence 999999 9999997543000 0 00
Q ss_pred CCccccccchhhhHHHHHhhheeeccCHHHHHHHHhHh
Q 000174 1525 SSYRVLSSKTLADVVEALIGVYYVEGGKDAANHLMKWI 1562 (1931)
Q Consensus 1525 ~~~~~~~~K~lADvvEALiGA~~l~~G~~~a~~~~~~l 1562 (1931)
....+|.+||+|||||||+|+|+|.+.+..|+..+
T Consensus 113 ---~~~~~~~lad~~EAliGAiyld~g~~~~~~~i~~~ 147 (242)
T 2a11_A 113 ---GADKSSILADGMESLLGAIYLQHGMEKAREVILRL 147 (242)
T ss_dssp ---GGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred ---CCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 01247899999999999999999999999998765
|
| >1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-21 Score=225.57 Aligned_cols=133 Identities=24% Similarity=0.353 Sum_probs=112.6
Q ss_pred HHHhhhcCCCCChh-HHHHHhccccCCCC----C-----CCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhh
Q 000174 1372 IQLKDKINYPVPAS-KILEALTAASCQET----F-----CYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMV 1441 (1931)
Q Consensus 1372 ~~l~~~l~~~~~~~-~ll~AlT~~s~~~~----~-----nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lV 1441 (1931)
.+|++.|||.|.+. +|.+||||+|+... . ||||||||||+||+++++.|||.+||+.+||.||.+|+.+|
T Consensus 22 ~~l~~~lgy~f~~~~LL~~AlTH~S~~~~~~~~~~~~~~~nerLefLGDavL~l~v~~~L~~~~p~~~eg~Ls~~r~~lV 101 (252)
T 1o0w_A 22 EEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLARVKSAAA 101 (252)
T ss_dssp HHHHHHHCCCCSSHHHHHHHHBCHHHHHHHHHTTCTTCCCSHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCHHHHHHHhCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 56888899999655 45599999998431 2 99999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHcCCccceeccccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCccc
Q 000174 1442 SNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELE 1521 (1931)
Q Consensus 1442 sN~~L~~~a~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1521 (1931)
||.+|+++|.++||+.||+..+-. ... +
T Consensus 102 ~~~~la~~a~~lgL~~~l~~~~~e------------------------------------------------~~~-~--- 129 (252)
T 1o0w_A 102 SEEVLAMVSRKMNLGKFLFLGKGE------------------------------------------------EKT-G--- 129 (252)
T ss_dssp SHHHHHHHHHHTTHHHHCBCCHHH------------------------------------------------HHT-T---
T ss_pred CHHHHHHHHHHcCcHHhhccCchh------------------------------------------------hhc-C---
Confidence 999999999999999999854300 000 0
Q ss_pred CCCCCccccccchhhhHHHHHhhheeeccCHHHHHHHHhHh
Q 000174 1522 GDSSSYRVLSSKTLADVVEALIGVYYVEGGKDAANHLMKWI 1562 (1931)
Q Consensus 1522 ~~~~~~~~~~~K~lADvvEALiGA~~l~~G~~~a~~~~~~l 1562 (1931)
....++.+||+|||||||+|+|+|.+.+..|+..+
T Consensus 130 ------~~~~~~~lad~~EAliGAiyld~g~~~~~~~i~~~ 164 (252)
T 1o0w_A 130 ------GRDRDSILADAFEALLAAIYLDQGYEKIKELFEQE 164 (252)
T ss_dssp ------GGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred ------CCCCccHHHhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 01247899999999999999999999999998665
|
| >3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.8e-21 Score=226.67 Aligned_cols=133 Identities=26% Similarity=0.387 Sum_probs=111.5
Q ss_pred HHhhhcCCC-CChhHHH-HHhccccCCC-----------CCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhh
Q 000174 1373 QLKDKINYP-VPASKIL-EALTAASCQE-----------TFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQ 1439 (1931)
Q Consensus 1373 ~l~~~l~~~-~~~~~ll-~AlT~~s~~~-----------~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~ 1439 (1931)
.|+..|||+ |.+..|| +||||+|+.. ..||||||||||+||+++++.|||.+||+.+||.||.+|+.
T Consensus 87 ~lE~~igy~~F~d~~LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDavL~l~vs~~L~~~~P~~~eG~Lt~lr~~ 166 (341)
T 3rv0_A 87 DVDMFIKYPVVYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKES 166 (341)
T ss_dssp TTGGGCSSCCCSCHHHHHHHHCCCCCC---CCSCHHHHGGGCTHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred HHHHhcCCCCcCCHHHHHHHhcCcCccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Confidence 467889999 9877666 9999999864 25899999999999999999999999999999999999999
Q ss_pred hhccHHHHHHHHHcCCccceeccccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCc
Q 000174 1440 MVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGE 1519 (1931)
Q Consensus 1440 lVsN~~L~~~a~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1519 (1931)
+|||.+|+.+|.++||++||+... +++. .
T Consensus 167 lVs~~~La~iA~~lgL~~~l~~~~-------g~~~----------------------------------------~---- 195 (341)
T 3rv0_A 167 IVNNNNLFDWSTKLNFTKRLQGNI-------ATPT----------------------------------------R---- 195 (341)
T ss_dssp HHSHHHHHHHHHHTTTTTTTCCSS-------CCC----------------------------------------------
T ss_pred HhCHHHHHHHHHHcCcHHHhhhcC-------Chhh----------------------------------------h----
Confidence 999999999999999999998531 1100 0
Q ss_pred ccCCCCCccccccchhhhHHHHHhhheeecc---CHHHHHHHHhHh
Q 000174 1520 LEGDSSSYRVLSSKTLADVVEALIGVYYVEG---GKDAANHLMKWI 1562 (1931)
Q Consensus 1520 ~~~~~~~~~~~~~K~lADvvEALiGA~~l~~---G~~~a~~~~~~l 1562 (1931)
......+|.+||+|||||||+|+|+ |++.|..|+..+
T Consensus 196 ------~~~~~~~~ilaD~fEAlIGAIylD~~~~G~~~a~~fi~~l 235 (341)
T 3rv0_A 196 ------VVKDKMSKRYADCVEAYIGALVIDRFGTEFLDIKEWLEEL 235 (341)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHHCSSTTHHHHHHHHHH
T ss_pred ------ccCCccccHHHHHHHHHHHHHhhcCccCCHHHHHHHHHHH
Confidence 0001246899999999999999998 999999988543
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-19 Score=195.78 Aligned_cols=117 Identities=24% Similarity=0.335 Sum_probs=108.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCC
Q 000174 701 KVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGR 780 (1931)
Q Consensus 701 ~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~ 780 (1931)
..+.|+..|.++|... ...++||||+++.+++.+++.|.. .++.+..+|| +|++.+|.+++++|++|+
T Consensus 18 ~~~~K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~hg-----~~~~~~r~~~~~~f~~g~ 85 (163)
T 2hjv_A 18 REENKFSLLKDVLMTE---NPDSCIIFCRTKEHVNQLTDELDD----LGYPCDKIHG-----GMIQEDRFDVMNEFKRGE 85 (163)
T ss_dssp CGGGHHHHHHHHHHHH---CCSSEEEECSSHHHHHHHHHHHHH----TTCCEEEECT-----TSCHHHHHHHHHHHHTTS
T ss_pred ChHHHHHHHHHHHHhc---CCCcEEEEECCHHHHHHHHHHHHH----cCCcEEEEeC-----CCCHHHHHHHHHHHHcCC
Confidence 3467999999999875 456899999999999999999998 5789999999 999999999999999999
Q ss_pred ceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEE
Q 000174 781 VTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYI 829 (1931)
Q Consensus 781 ~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~i 829 (1931)
++|||||+++++|+|+|++++||+||+|+++.+|+||+||++|.|+.+.
T Consensus 86 ~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~ 134 (163)
T 2hjv_A 86 YRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGK 134 (163)
T ss_dssp CSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEE
T ss_pred CeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCce
Confidence 9999999999999999999999999999999999999999999997733
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-19 Score=198.59 Aligned_cols=115 Identities=23% Similarity=0.340 Sum_probs=107.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCc
Q 000174 702 VTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRV 781 (1931)
Q Consensus 702 ~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~ 781 (1931)
.+.|...|.++|... ...++||||+++.+++.|++.|.. .++.+..+|| +|++.+|.+++++|++|++
T Consensus 15 ~~~K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~hg-----~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVE----QNFPAIAIHR-----GMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp GGGHHHHHHHHHHHS---CCSSEEEECSSHHHHHHHHHHHHH----TTCCEEEECT-----TSCHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHHhC---CCCcEEEEECCHHHHHHHHHHHHh----cCCCEEEEEC-----CCCHHHHHHHHHHHHCCCC
Confidence 357999999999875 457999999999999999999998 5789999999 9999999999999999999
Q ss_pred eEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE
Q 000174 782 TLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY 828 (1931)
Q Consensus 782 ~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ 828 (1931)
+|||||+++++|+|+|+|++||+||+|+|+..|+||+|||||.|+.+
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g 129 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKG 129 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCC
T ss_pred cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCc
Confidence 99999999999999999999999999999999999999999998763
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-19 Score=201.39 Aligned_cols=121 Identities=26% Similarity=0.385 Sum_probs=106.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCC
Q 000174 701 KVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGR 780 (1931)
Q Consensus 701 ~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~ 780 (1931)
....|+..|.++|... ..++||||+++.+++.|++.|.. .++.+..+|| ++++.+|++++++|++|+
T Consensus 38 ~~~~K~~~L~~~l~~~----~~~~lVF~~~~~~~~~l~~~L~~----~g~~~~~lhg-----~~~~~~R~~~l~~F~~g~ 104 (191)
T 2p6n_A 38 KEEAKMVYLLECLQKT----PPPVLIFAEKKADVDAIHEYLLL----KGVEAVAIHG-----GKDQEERTKAIEAFREGK 104 (191)
T ss_dssp CGGGHHHHHHHHHTTS----CSCEEEECSCHHHHHHHHHHHHH----HTCCEEEECT-----TSCHHHHHHHHHHHHHTS
T ss_pred ChHHHHHHHHHHHHhC----CCCEEEEECCHHHHHHHHHHHHH----cCCcEEEEeC-----CCCHHHHHHHHHHHhcCC
Confidence 3457999999988653 45899999999999999999987 5789999999 999999999999999999
Q ss_pred ceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--EEEEEec
Q 000174 781 VTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--YILMIER 834 (1931)
Q Consensus 781 ~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivlv~~ 834 (1931)
++|||||+++++|||+|++++||+||+|+++..|+||+|||||.|+. .++++..
T Consensus 105 ~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~ 160 (191)
T 2p6n_A 105 KDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINK 160 (191)
T ss_dssp CSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECT
T ss_pred CEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcC
Confidence 99999999999999999999999999999999999999999999876 4444443
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-19 Score=199.04 Aligned_cols=124 Identities=27% Similarity=0.385 Sum_probs=97.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCC
Q 000174 701 KVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGR 780 (1931)
Q Consensus 701 ~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~ 780 (1931)
..+.|+..|.++|... ..+.++||||+++.+++.|++.|.. .++.+..+|| +|++.+|++++++|++|+
T Consensus 28 ~~~~K~~~L~~ll~~~--~~~~k~lVF~~~~~~~~~l~~~L~~----~g~~~~~lhg-----~~~~~~r~~~~~~f~~g~ 96 (185)
T 2jgn_A 28 EESDKRSFLLDLLNAT--GKDSLTLVFVETKKGADSLEDFLYH----EGYACTSIHG-----DRSQRDREEALHQFRSGK 96 (185)
T ss_dssp CGGGHHHHHHHHHHHC---CCSCEEEEESCHHHHHHHHHHHHH----TTCCEEEEC-------------CHHHHHHHHTS
T ss_pred CcHHHHHHHHHHHHhc--CCCCeEEEEECCHHHHHHHHHHHHH----cCCceEEEeC-----CCCHHHHHHHHHHHHcCC
Confidence 3467999999999874 3568999999999999999999998 5789999999 999999999999999999
Q ss_pred ceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE--EEEEecC
Q 000174 781 VTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY--ILMIERG 835 (1931)
Q Consensus 781 ~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~--ivlv~~~ 835 (1931)
++|||||+++++|+|+|+|++||+||+|+++.+|+||+|||+|.|+.+ ++++...
T Consensus 97 ~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 153 (185)
T 2jgn_A 97 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNER 153 (185)
T ss_dssp SSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGG
T ss_pred CeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchh
Confidence 999999999999999999999999999999999999999999999773 3444433
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-18 Score=199.02 Aligned_cols=122 Identities=25% Similarity=0.404 Sum_probs=109.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCC
Q 000174 701 KVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGR 780 (1931)
Q Consensus 701 ~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~ 780 (1931)
....|+..|.+++... ...++||||+++.+++.|++.|.. .++.+..+|| +|++.+|++++++|++|+
T Consensus 14 ~~~~k~~~l~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~lhg-----~~~~~~r~~~~~~f~~g~ 81 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYVA---SPDRAMVFTRTKAETEEIAQGLLR----LGHPAQALHG-----DLSQGERERVLGAFRQGE 81 (212)
T ss_dssp CTTSHHHHHHHHHHHH---CCSCEEEECSSHHHHHHHHHHHHH----HTCCEEEECS-----SSCHHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHHHH----cCCCEEEEEC-----CCCHHHHHHHHHHHHCCC
Confidence 3467999999999865 367999999999999999999987 5789999999 999999999999999999
Q ss_pred ceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--EEEEEec
Q 000174 781 VTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--YILMIER 834 (1931)
Q Consensus 781 ~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivlv~~ 834 (1931)
++|||||+++++|||+|+|++||+||+|+++.+|+||+|||||.|+. .++++..
T Consensus 82 ~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~ 137 (212)
T 3eaq_A 82 VRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGP 137 (212)
T ss_dssp CCEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECG
T ss_pred CeEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEch
Confidence 99999999999999999999999999999999999999999999866 3444443
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.78 E-value=9.5e-19 Score=191.29 Aligned_cols=120 Identities=20% Similarity=0.342 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceE
Q 000174 704 PKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTL 783 (1931)
Q Consensus 704 ~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~v 783 (1931)
.|...|.+++... ...++||||+++..++.++..|.. .++.+..+|| +|++.+|.+++++|++|+++|
T Consensus 16 ~K~~~l~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~~-----~~~~~~r~~~~~~f~~g~~~v 83 (165)
T 1fuk_A 16 YKYECLTDLYDSI---SVTQAVIFCNTRRKVEELTTKLRN----DKFTVSAIYS-----DLPQQERDTIMKEFRSGSSRI 83 (165)
T ss_dssp GHHHHHHHHHHHT---TCSCEEEEESSHHHHHHHHHHHHH----TTCCEEEECT-----TSCHHHHHHHHHHHHTTSCSE
T ss_pred hHHHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHH----cCCCEEEEEC-----CCCHHHHHHHHHHHHcCCCEE
Confidence 3899999999875 457999999999999999999998 5789999999 999999999999999999999
Q ss_pred EEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--EEEEEecC
Q 000174 784 LVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--YILMIERG 835 (1931)
Q Consensus 784 LVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivlv~~~ 835 (1931)
||||+++++|+|+|++++||+||+|+++.+|+||+|||||.|+. .++++...
T Consensus 84 lv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 137 (165)
T 1fuk_A 84 LISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNE 137 (165)
T ss_dssp EEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETT
T ss_pred EEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcch
Confidence 99999999999999999999999999999999999999999866 44455543
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=192.28 Aligned_cols=113 Identities=29% Similarity=0.399 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceE
Q 000174 704 PKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTL 783 (1931)
Q Consensus 704 ~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~v 783 (1931)
.|+..|.+++... ...++||||+++.++..++..|.. .++.+..+|| +|++.+|.+++++|++|+++|
T Consensus 20 ~K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~g-----~~~~~~R~~~~~~f~~g~~~v 87 (175)
T 2rb4_A 20 DKYQALCNIYGSI---TIGQAIIFCQTRRNAKWLTVEMIQ----DGHQVSLLSG-----ELTVEQRASIIQRFRDGKEKV 87 (175)
T ss_dssp HHHHHHHHHHTTS---CCSEEEEECSCHHHHHHHHHHHHT----TTCCEEEECS-----SCCHHHHHHHHHHHHTTSCSE
T ss_pred hHHHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHH----cCCcEEEEeC-----CCCHHHHHHHHHHHHcCCCeE
Confidence 4888888888654 467999999999999999999998 5789999999 999999999999999999999
Q ss_pred EEEecccccCCCCCCCCEEEEcCCC------CCHHHHHHhhccCCCCCCcE
Q 000174 784 LVATSVAEEGLDIRQCNVVIRFDLA------KTVLAYIQSRGRARKPGSDY 828 (1931)
Q Consensus 784 LVaTdVaeeGlDip~~~lVI~fD~p------~s~~~yiQr~GRa~R~Gs~~ 828 (1931)
||||+++++|||+|+|++||+||+| +++.+|+||+|||||.|+.+
T Consensus 88 LvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g 138 (175)
T 2rb4_A 88 LITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKG 138 (175)
T ss_dssp EEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCE
T ss_pred EEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCc
Confidence 9999999999999999999999999 89999999999999998774
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-18 Score=205.74 Aligned_cols=151 Identities=23% Similarity=0.252 Sum_probs=116.6
Q ss_pred CCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcC---C
Q 000174 302 EQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG---Y 377 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~---l 377 (1931)
.+|++||.++++.++. ++.|++++||+|||+++++++...+.. ...++||||||++|+.||.++++++.. .
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-----~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~ 186 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-----YEGKILIIVPTTALTTQMADDFVDYRLFSHA 186 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH-----CSSEEEEECSSHHHHHHHHHHHHHHTSCCGG
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc-----CCCeEEEEECCHHHHHHHHHHHHHhcccccc
Confidence 5899999999999988 789999999999999999988776652 234799999999999999999999753 4
Q ss_pred cEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCC
Q 000174 378 VVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSK 457 (1931)
Q Consensus 378 ~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~ 457 (1931)
.+..++|+.... .......+|+|+||+.+.+. ....+.++++||+||||++.++ .+..+ .....
T Consensus 187 ~~~~~~~~~~~~-------~~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~~-~~~~i----l~~~~- 250 (282)
T 1rif_A 187 MIKKIGGGASKD-------DKYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATGK-SISSI----ISGLN- 250 (282)
T ss_dssp GEEECSTTCSST-------TCCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCHH-HHHHH----TTTCT-
T ss_pred eEEEEeCCCcch-------hhhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCcc-cHHHH----HHHhh-
Confidence 667777765331 12336789999999988643 2245688999999999999753 33333 33221
Q ss_pred CCCcEEEEEeecCCCCC
Q 000174 458 EKRPSVFGMTASPVNLK 474 (1931)
Q Consensus 458 ~~~p~iLgLTATP~~~~ 474 (1931)
..+++++|||||.+..
T Consensus 251 -~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 251 -NCMFKFGLSGSLRDGK 266 (282)
T ss_dssp -TCCEEEEECSSCCTTS
T ss_pred -cCCeEEEEeCCCCCcc
Confidence 2489999999998643
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.8e-18 Score=201.65 Aligned_cols=123 Identities=25% Similarity=0.398 Sum_probs=107.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCC
Q 000174 701 KVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGR 780 (1931)
Q Consensus 701 ~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~ 780 (1931)
..+.|+..|.+++... ...++||||+++.+++.|++.|.. .++.+..+|| +|++.+|+.++++|++|+
T Consensus 11 ~~~~K~~~L~~ll~~~---~~~~~LVF~~t~~~~~~l~~~L~~----~g~~~~~lhg-----~l~~~~r~~~~~~f~~g~ 78 (300)
T 3i32_A 11 PVRGRLEVLSDLLYVA---SPDRAMVFTRTKAETEEIAQGLLR----LGHPAQALHG-----DMSQGERERVMGAFRQGE 78 (300)
T ss_dssp CSSSHHHHHHHHHHHH---CCSSEEEECSSHHHHHHHHHHHHT----TTCCEEEECS-----CCCTHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHhc---CCCCEEEEECCHHHHHHHHHHHHh----CCCCEEEEeC-----CCCHHHHHHHHHHhhcCC
Confidence 3467999999999876 367999999999999999999987 5789999999 999999999999999999
Q ss_pred ceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--EEEEEecC
Q 000174 781 VTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--YILMIERG 835 (1931)
Q Consensus 781 ~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivlv~~~ 835 (1931)
.+|||||+++++|||+|+|++||+||+|+++.+|+||+|||||.|+. .++++...
T Consensus 79 ~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~ 135 (300)
T 3i32_A 79 VRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPR 135 (300)
T ss_dssp CCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSS
T ss_pred ceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChH
Confidence 99999999999999999999999999999999999999999999865 44444443
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.74 E-value=9.5e-18 Score=194.41 Aligned_cols=141 Identities=28% Similarity=0.326 Sum_probs=113.5
Q ss_pred CCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCc-
Q 000174 301 EEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYV- 378 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~- 378 (1931)
...|++||.++++.+++ +++|++++||+|||++++.++... +.+++|++|+++|+.||.+++++ +++.
T Consensus 91 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---------~~~~liv~P~~~L~~q~~~~~~~-~~~~~ 160 (237)
T 2fz4_A 91 EISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---------STPTLIVVPTLALAEQWKERLGI-FGEEY 160 (237)
T ss_dssp CCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS---------CSCEEEEESSHHHHHHHHHHHGG-GCGGG
T ss_pred CCCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc---------CCCEEEEeCCHHHHHHHHHHHHh-CCCCe
Confidence 46899999999999988 779999999999999999887642 35699999999999999999999 7888
Q ss_pred EEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCC
Q 000174 379 VGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKE 458 (1931)
Q Consensus 379 v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~ 458 (1931)
+..++|+.. ...+|+|+|++.+...... ....+++|||||||++... .|..++..+
T Consensus 161 v~~~~g~~~-------------~~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~-~~~~i~~~~------- 216 (237)
T 2fz4_A 161 VGEFSGRIK-------------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAE-SYVQIAQMS------- 216 (237)
T ss_dssp EEEESSSCB-------------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTT-THHHHHHTC-------
T ss_pred EEEEeCCCC-------------CcCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCCh-HHHHHHHhc-------
Confidence 888888753 2568999999999866542 1256999999999999874 666654322
Q ss_pred CCcEEEEEeecCCCCCC
Q 000174 459 KRPSVFGMTASPVNLKG 475 (1931)
Q Consensus 459 ~~p~iLgLTATP~~~~~ 475 (1931)
..+++|+|||||.+.++
T Consensus 217 ~~~~~l~LSATp~r~D~ 233 (237)
T 2fz4_A 217 IAPFRLGLTATFEREDG 233 (237)
T ss_dssp CCSEEEEEEESCC----
T ss_pred cCCEEEEEecCCCCCCC
Confidence 24789999999997554
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.72 E-value=4e-16 Score=200.55 Aligned_cols=129 Identities=21% Similarity=0.162 Sum_probs=105.5
Q ss_pred cCCCCCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHH---
Q 000174 298 KMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQ--- 374 (1931)
Q Consensus 298 ~~~~~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~--- 374 (1931)
.+|+ .|+++|..+++.+++++ |+.+.||+|||++|++|+..... .+..|+||+||++||.|.++.+..+
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~-IaeakTGeGKTLvf~Lp~~L~aL------~G~qv~VvTPTreLA~Qdae~m~~l~~~ 146 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK-IAEMKTGEGKTLVATLAVALNAL------TGKGVHVVTVNDYLARRDAEWMGPVYRG 146 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS-EEECCSTHHHHHHHHHHHHHHHT------TCSCCEEEESSHHHHHHHHHHHHHHHHT
T ss_pred HhCC-CCcHHHHhhcccccCCc-eeeccCCCchHHHHHHHHHHHHH------hCCCEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 3676 99999999999999966 99999999999999999853222 1346999999999999988888764
Q ss_pred cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHH-HHHHhccc------cccc---ceeEEEEeCCCcccC
Q 000174 375 TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQIL-LNILRHSI------IKME---AINLLILDECHHAVK 440 (1931)
Q Consensus 375 ~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L-~d~L~~~~------l~l~---~i~lLV~DEaH~~~~ 440 (1931)
+|+++++++|++... .++....++|+|+||+.| +|+|..+. +.+. .++++|+||||+++.
T Consensus 147 lGLsv~~i~Gg~~~~------~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLi 216 (997)
T 2ipc_A 147 LGLSVGVIQHASTPA------ERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILI 216 (997)
T ss_dssp TTCCEEECCTTCCHH------HHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTT
T ss_pred cCCeEEEEeCCCCHH------HHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHH
Confidence 589999999987632 122234799999999999 89887653 4567 899999999999873
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.8e-19 Score=195.44 Aligned_cols=114 Identities=31% Similarity=0.460 Sum_probs=105.5
Q ss_pred CHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCce
Q 000174 703 TPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVT 782 (1931)
Q Consensus 703 s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~ 782 (1931)
+.|+..|.++|... ...++||||+++.+++.+++.|.. .++.+..+|| +|++.+|.+++++|++|+++
T Consensus 15 ~~k~~~l~~ll~~~---~~~~~iVF~~~~~~~~~l~~~L~~----~~~~~~~~~g-----~~~~~~r~~~~~~f~~g~~~ 82 (170)
T 2yjt_D 15 EHKTALLVHLLKQP---EATRSIVFVRKRERVHELANWLRE----AGINNCYLEG-----EMVQGKRNEAIKRLTEGRVN 82 (170)
Confidence 56888888888653 467999999999999999999987 5789999999 99999999999999999999
Q ss_pred EEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE
Q 000174 783 LLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY 828 (1931)
Q Consensus 783 vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ 828 (1931)
|||||+++++|+|+|+|++||+||+|+++..|+||+|||||.|+.+
T Consensus 83 vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g 128 (170)
T 2yjt_D 83 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKG 128 (170)
Confidence 9999999999999999999999999999999999999999998763
|
| >2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-16 Score=180.43 Aligned_cols=152 Identities=27% Similarity=0.295 Sum_probs=115.3
Q ss_pred CCCChHHHHHHHHhhcCCceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhhhhhh--
Q 000174 1764 PMHPVRELQERCQQQAEGLEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEKETAEAK-- 1836 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~-- 1836 (1931)
..+|++.|+++++. +..+.|++.. .| +.|+|+|.|+|.. +.|.|.|||+|++.||+.||+.|.........
T Consensus 3 ~~~~K~~l~~l~e~-~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~-~~G~G~SKK~Aeq~AA~~al~~l~~~~~~~~~~~ 80 (236)
T 2l3j_A 3 PVLPKNALMQLNEI-KPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAAEKALRSFVQFPNASEAHL 80 (236)
T ss_dssp CCCTHHHHHHHHHH-CSSCEEEEEEEESCTTSCEEEEEEEETTEE-EEEEESHHHHHHHHHHHHHHHHHTTCSSCSCCCC
T ss_pred CCCCcCHHHHHhhc-CCCceEEEEeccCCCCCCeEEEEEEECCEE-EEEecCChHHHHHHHHHHHHHHHHhccccccchh
Confidence 35777777777754 3457999754 45 4899999999988 59999999999999999999999764311000
Q ss_pred ------c-----cCCc------------C-------------C----------cc----------cC---------CCCc
Q 000174 1837 ------E-----KGDE------------N-------------G----------KK----------RK---------NGTQ 1851 (1931)
Q Consensus 1837 ------~-----~~~~------------~-------------~----------~~----------~~---------~~~~ 1851 (1931)
. ..+. . + .. .. +...
T Consensus 81 amg~~~~~~~d~~~d~~~~p~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~ 160 (236)
T 2l3j_A 81 AMGRTLSVNTDFTSDQADFPDTLFNGFETPDKSEPPFYVGSNGDDSFSSSGDVSLSASPVPASLTQPPLPIPPPFPPPSG 160 (236)
T ss_dssp SCCCCCCCTTSCCSCCSCCCCCCCCCCCCSSSSCCCSSCSSSCSSSSSCSCCCSSCCCCCCCCSSSCSSSSCCCCCCCSS
T ss_pred hhccCCCCCCCCcccccccchhhcccccccccccccccccccccccccccchhhccccccccccccccCccccccCCCCC
Confidence 0 0000 0 0 00 00 0124
Q ss_pred cchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1852 TFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1852 ~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
.||++.|||+ ++.|.|+++.++||+|.+.|++.|+|++. .+.|.| +|||+|||.||+.||+.|...
T Consensus 161 ~d~ks~LqE~-----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~----~~~G~G---~sKK~Aeq~AA~~al~~L~~~ 226 (236)
T 2l3j_A 161 KNPVMILNEL-----RPGLKYDFLSESGESHAKSFVMSVVVDGQ----FFEGSG---RNKKLAKARAAQSALATVFNL 226 (236)
T ss_dssp CCHHHHHHHH-----CCCEEEEEECCSSSSSSCCEEEEEEETTE----EEEEEE---SSHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHhc-----CCCCcEEEEEeeCCCCCCeEEEEEEECCE----EEEeee---CCHHHHHHHHHHHHHHHHccc
Confidence 6999999999 57899999999999999999999999643 458999 999999999999999999753
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.67 E-value=9.3e-17 Score=189.15 Aligned_cols=118 Identities=19% Similarity=0.255 Sum_probs=95.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcC-
Q 000174 701 KVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDG- 779 (1931)
Q Consensus 701 ~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G- 779 (1931)
..++|+..|.++|.... ..+.|+||||+++.+++.|...|... .++.+..+|| ++++.+|++++++|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~-~~~~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G-----~~~~~~R~~~i~~F~~~~ 163 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEAL-DEGDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYG-----ELSKKERDDIISKFQNNP 163 (271)
T ss_dssp TTCHHHHHHHHHHHHHH-HTTCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECT-----TSCHHHHHHHHHHHHHCT
T ss_pred ccCHHHHHHHHHHHHHH-hCCCeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEEC-----CCCHHHHHHHHHHhcCCC
Confidence 45789999999998862 24689999999999999999999862 2678999999 99999999999999998
Q ss_pred Cce-EEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 780 RVT-LLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 780 ~~~-vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
+++ +||+|+++++|||++.|++||+||+|||+..|+||+||++|.|++
T Consensus 164 ~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~ 212 (271)
T 1z5z_A 164 SVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQT 212 (271)
T ss_dssp TCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC-------------
T ss_pred CCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCC
Confidence 777 899999999999999999999999999999999999999999987
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-15 Score=197.98 Aligned_cols=127 Identities=20% Similarity=0.227 Sum_probs=88.9
Q ss_pred CCcHHHHHHHHHHh----c-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCC
Q 000174 303 QARPYQLDVLEQAK----K-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY 377 (1931)
Q Consensus 303 ~~~~~Q~eai~~~l----~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l 377 (1931)
+|||+|.+++..+. . +++|+.++||+|||++|++|+... ..+++|++||++|+.|+.+++.. +++
T Consensus 7 ~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~---------~~~~~~~~~t~~l~~q~~~~~~~-l~~ 76 (540)
T 2vl7_A 7 QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL---------KKKVLIFTRTHSQLDSIYKNAKL-LGL 76 (540)
T ss_dssp --CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH---------TCEEEEEESCHHHHHHHHHHHGG-GTC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC---------CCcEEEEcCCHHHHHHHHHHHHh-cCC
Confidence 89999999877653 3 789999999999999999997532 46799999999999999999887 577
Q ss_pred cEEEEeCCCcc----------------------------cccchHHHHh---------------hcCCccEEEEcHHHHH
Q 000174 378 VVGHYCGEMGQ----------------------------DFWDAQRWQR---------------EFDTKQVLVMTAQILL 414 (1931)
Q Consensus 378 ~v~~~~G~~~~----------------------------~~~~~~~w~~---------------~~~~~~IlV~Tpq~L~ 414 (1931)
++..+.|.... +.+....|.. ....++|||+||+.|+
T Consensus 77 ~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~ 156 (540)
T 2vl7_A 77 KTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLF 156 (540)
T ss_dssp CEEEC---------------------------------------------------------CTTGGGCSEEEEETHHHH
T ss_pred cEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhc
Confidence 77666553210 0001112322 1346799999999999
Q ss_pred HHHhcccc-------cccceeEEEEeCCCccc
Q 000174 415 NILRHSII-------KMEAINLLILDECHHAV 439 (1931)
Q Consensus 415 d~L~~~~l-------~l~~i~lLV~DEaH~~~ 439 (1931)
+....+.+ .+....++||||||++-
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 157 QKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp SHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred CHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 86654322 24567899999999993
|
| >1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=5.2e-16 Score=158.66 Aligned_cols=105 Identities=24% Similarity=0.268 Sum_probs=87.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHHHHHHHHHc----Cch----hhhccCCchhHHHHH
Q 000174 1624 SCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKH----KLH----VHLRHGSSALDRQIR 1695 (1931)
Q Consensus 1624 ~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~La~~a~~~----gl~----~~l~~~~~~~~~~i~ 1695 (1931)
-+.+||||||||||+++|.+|||.+ |..++|.||++|+.+||.+.+|.++.++ +|. .+++.+.....
T Consensus 10 ~~~erLefLGDAVlel~vr~~L~~~-~~~~eg~L~k~r~~~V~a~aqa~~~~~l~~~~~L~eeE~~~~r~Grn~~~---- 84 (138)
T 1u61_A 10 LNSLALAYMGDAVYEQYIRYHLLQK-GKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRGRNANS---- 84 (138)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHH-CCSCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHHHTCCCS----
T ss_pred cCHHHHHHhhHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHcCHHHHHHHHHHhhcccCCChHHHHHhhcCCCccc----
Confidence 5889999999999999999999999 8889999999999999999999999999 887 67776555421
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCCch----HHHHHHHHHhHhhccccCCceeEEeeeccCC
Q 000174 1696 DFVKEVLEELLKPGFNSFGLGDCKAPKV----LGDIVESIAGAIFLDSGRDTSVVWQVFQPLL 1754 (1931)
Q Consensus 1696 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~----l~D~fEAiiGAiylDsg~~~~~v~~~~~~~l 1754 (1931)
.+....+.+ +||.|||+|||||+|.|++ .+.+++.+++
T Consensus 85 -------------------~~~~k~~si~~Yr~A~~fEALiGalYLd~g~e--r~~~~i~~~~ 126 (138)
T 1u61_A 85 -------------------GTVPKNTDVQTYRHSTAFEALIGYHHLLNNRE--RLDEIVYKAI 126 (138)
T ss_dssp -------------------SCCCTTCCHHHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHH
T ss_pred -------------------CCCCCCCchhhhhhhhHHHHHHHHHHHCCCHH--HHHHHHHHHH
Confidence 123456789 9999999999999999866 3344544433
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-15 Score=174.37 Aligned_cols=159 Identities=18% Similarity=0.187 Sum_probs=115.3
Q ss_pred CCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCc
Q 000174 300 PEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYV 378 (1931)
Q Consensus 300 ~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~ 378 (1931)
....++++|.++++.+.+ +++++.++||||||.++.+++.+...... ......++|++|+++|+.|+++.+...++..
T Consensus 58 ~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~-~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 58 ELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND-RAAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT-CGGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred hcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC-CCCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 345689999999999998 88999999999999888887765444321 1224589999999999999999998876544
Q ss_pred EEEEeCCCcccccchHHHHhh-cCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcc-cCCCcHH-HHHHHHHhhc
Q 000174 379 VGHYCGEMGQDFWDAQRWQRE-FDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHA-VKKHPYS-LVMSEFYHTT 455 (1931)
Q Consensus 379 v~~~~G~~~~~~~~~~~w~~~-~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~-~~~~~~~-~im~~~~~~~ 455 (1931)
++...|. ... .+... ..+.+|+|+||++|.+++.. .+.++++||+||||++ .. ..+. ..++.+....
T Consensus 137 ~~~~~g~-~~~-----~~~~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~-~~~~~~~l~~i~~~~ 206 (235)
T 3llm_A 137 PGKSCGY-SVR-----FESILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDIN-TDFLLVVLRDVVQAY 206 (235)
T ss_dssp TTSSEEE-EET-----TEEECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHH-HHHHHHHHHHHHHHC
T ss_pred cCceEEE-eec-----hhhccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcc-hHHHHHHHHHHHhhC
Confidence 3221111 000 01111 14688999999999999876 4889999999999986 33 3444 4666666554
Q ss_pred CCCCCcEEEEEeecCCC
Q 000174 456 SKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 456 ~~~~~p~iLgLTATP~~ 472 (1931)
+ ..++++||||+..
T Consensus 207 ~---~~~~il~SAT~~~ 220 (235)
T 3llm_A 207 P---EVRIVLMSATIDT 220 (235)
T ss_dssp T---TSEEEEEECSSCC
T ss_pred C---CCeEEEEecCCCH
Confidence 3 3789999999763
|
| >1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=4.3e-15 Score=151.89 Aligned_cols=106 Identities=17% Similarity=0.134 Sum_probs=86.8
Q ss_pred CCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHHHHHHHHc----CCc----cceeccccCCCCcc
Q 000174 1399 TFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSK----GLQ----SYIQADRFAPSRWA 1470 (1931)
Q Consensus 1399 ~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L~~~a~~~----gL~----~~i~~~~f~~~~w~ 1470 (1931)
..|.|||||||||||.++|+.|||.+ |..+||.||.+|+.+||-+.++.++.++ +|. .+++..+-..
T Consensus 9 ~~~~erLefLGDAVlel~vr~~L~~~-~~~~eg~L~k~r~~~V~a~aqa~~~~~l~~~~~L~eeE~~~~r~Grn~~---- 83 (138)
T 1u61_A 9 QLNSLALAYMGDAVYEQYIRYHLLQK-GKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRGRNAN---- 83 (138)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHH-CCSCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHHHTCCC----
T ss_pred hcCHHHHHHhhHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHcCHHHHHHHHHHhhcccCCChHHHHHhhcCCCcc----
Confidence 57999999999999999999999999 8889999999999999999999999999 887 5665432000
Q ss_pred CCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCCCCccccccch----hhhHHHHHhhhe
Q 000174 1471 APGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSSYRVLSSKT----LADVVEALIGVY 1546 (1931)
Q Consensus 1471 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~----lADvvEALiGA~ 1546 (1931)
. ....-.... +||+|||||||+
T Consensus 84 ----------------------------------------------------~--~~~~k~~si~~Yr~A~~fEALiGal 109 (138)
T 1u61_A 84 ----------------------------------------------------S--GTVPKNTDVQTYRHSTAFEALIGYH 109 (138)
T ss_dssp ----------------------------------------------------S--SCCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------------c--CCCCCCCchhhhhhhhHHHHHHHHH
Confidence 0 000001235 999999999999
Q ss_pred eeccCHHHHHHHHhHhh
Q 000174 1547 YVEGGKDAANHLMKWIG 1563 (1931)
Q Consensus 1547 ~l~~G~~~a~~~~~~l~ 1563 (1931)
|+++|.+.+..|+.++-
T Consensus 110 YLd~g~er~~~~i~~~~ 126 (138)
T 1u61_A 110 HLLNNRERLDEIVYKAI 126 (138)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 99999999999987653
|
| >3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.5e-15 Score=139.87 Aligned_cols=75 Identities=29% Similarity=0.451 Sum_probs=66.7
Q ss_pred CccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1850 TQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1850 ~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
...||++.|||+||+++++.|.|+++.++||+|.+.|++.|.|++. .+.|.| +|||+|||.||+.||+.|.+.
T Consensus 13 ~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~----~~~G~G---~SKK~Aeq~AA~~AL~~L~~~ 85 (88)
T 3adl_A 13 RGSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF----IEIGSG---TSKKLAKRNAAAKMLLRVHTV 85 (88)
T ss_dssp TTCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE----EEEEEE---SSHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE----EEEEee---CCHHHHHHHHHHHHHHHHHcc
Confidence 3469999999999999999999999999999999999999999753 458999 999999999999999999876
Q ss_pred CC
Q 000174 1930 YS 1931 (1931)
Q Consensus 1930 ~~ 1931 (1931)
.|
T Consensus 86 p~ 87 (88)
T 3adl_A 86 PL 87 (88)
T ss_dssp --
T ss_pred CC
Confidence 43
|
| >3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A | Back alignment and structure |
|---|
Probab=99.54 E-value=4.4e-15 Score=137.89 Aligned_cols=72 Identities=19% Similarity=0.327 Sum_probs=65.2
Q ss_pred ccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhh
Q 000174 1851 QTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928 (1931)
Q Consensus 1851 ~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~ 1928 (1931)
..||++.|||+||+++++.|.|+++.++||+|.+.|++.|.|++.. .+.|.| +|||+||+.||+.||+.|.+
T Consensus 3 ~~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~---~~~G~G---~sKK~Aeq~AA~~al~~L~~ 74 (76)
T 3adj_A 3 HGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIK---YTGAAT---RTKKDAEISAGRTALLAIQS 74 (76)
T ss_dssp CHHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEE---EECCCB---SSHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEE---EEEecc---CCHHHHHHHHHHHHHHHHhh
Confidence 4699999999999999999999999999999999999999997432 346788 99999999999999999975
|
| >1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.9e-15 Score=134.61 Aligned_cols=69 Identities=30% Similarity=0.550 Sum_probs=63.6
Q ss_pred chHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhh
Q 000174 1853 FTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928 (1931)
Q Consensus 1853 n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~ 1928 (1931)
.|++.|||+||+++|+.|.|+++.++||+|.+.|++.|.|++. .+.|.| +|||+||+.||+.||+.|.+
T Consensus 1 ~p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~----~~~G~G---~sKK~Aeq~AA~~al~~L~~ 69 (69)
T 1di2_A 1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF----VETGSG---TSKQVAKRVAAEKLLTKFKT 69 (69)
T ss_dssp CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE----EEEEEE---SSHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE----EEEeec---CCHHHHHHHHHHHHHHHHhC
Confidence 3899999999999999999999999999999999999999753 458999 99999999999999999863
|
| >2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-14 Score=138.40 Aligned_cols=77 Identities=29% Similarity=0.438 Sum_probs=69.1
Q ss_pred cCCCCccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHH
Q 000174 1846 RKNGTQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLEL 1925 (1931)
Q Consensus 1846 ~~~~~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~ 1925 (1931)
.++....||++.|||+||+++|..|.|+++.+.||+|.+.|++.|.|++. .+.|.| +|||+||+.||+.||+.
T Consensus 10 ~~~~~~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~----~~~G~G---~SKK~Aeq~AA~~AL~~ 82 (89)
T 2cpn_A 10 SPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF----IEIGSG---TSKKLAKRNAAAKMLLR 82 (89)
T ss_dssp CCCCCCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE----EEEEEE---SSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE----EEEeee---CCHHHHHHHHHHHHHHH
Confidence 34555689999999999999999999999999999999999999999753 458999 99999999999999999
Q ss_pred Hhhh
Q 000174 1926 LNKW 1929 (1931)
Q Consensus 1926 L~~~ 1929 (1931)
|.+.
T Consensus 83 L~~~ 86 (89)
T 2cpn_A 83 VSGP 86 (89)
T ss_dssp HHSC
T ss_pred HHhh
Confidence 9753
|
| >1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A | Back alignment and structure |
|---|
Probab=99.49 E-value=8.8e-15 Score=136.12 Aligned_cols=72 Identities=31% Similarity=0.393 Sum_probs=65.6
Q ss_pred CccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1850 TQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1850 ~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
...||++.|||+||+++++ |.|+++.++||+|.+.|++.|.|++ ..+.|.| +|||+||+.||+.||+.|.++
T Consensus 5 ~~~d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~----~~~~G~G---~sKK~Aeq~AA~~aL~~L~~l 76 (76)
T 1ekz_A 5 DKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS----IVTEGEG---NGKKVSKKRAAEKMLVELQKL 76 (76)
T ss_dssp CCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT----EEEEECC---CSTTSSSHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC----EEEEEee---CCHHHHHHHHHHHHHHHHhhC
Confidence 3469999999999999999 9999999999999999999999964 4568888 999999999999999999764
|
| >1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=3e-14 Score=135.77 Aligned_cols=70 Identities=27% Similarity=0.279 Sum_probs=65.0
Q ss_pred cchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhh
Q 000174 1852 TFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928 (1931)
Q Consensus 1852 ~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~ 1928 (1931)
.||++.|||+||++++..|.|+++.++||+|.+.|++.|.|++. ...|.| +|||+||+.||+.||+.|..
T Consensus 6 ~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~----~~~G~G---~SKK~Aeq~AA~~AL~~L~~ 75 (89)
T 1uhz_A 6 SGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE----VATGTG---PNKKIAKKNAAEAMLLQLGY 75 (89)
T ss_dssp SCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE----EEEEEE---SSHHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE----EEEEee---CCHHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999999742 458999 99999999999999999975
|
| >2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-14 Score=146.21 Aligned_cols=106 Identities=19% Similarity=0.141 Sum_probs=80.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHHHHHHHHHcC--ch----hhhccCCchhHHHHHHH
Q 000174 1624 SCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHK--LH----VHLRHGSSALDRQIRDF 1697 (1931)
Q Consensus 1624 ~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~La~~a~~~g--l~----~~l~~~~~~~~~~i~~~ 1697 (1931)
-+.+|||||||||++++|.+|||.+ |. ++|.||++|+++||.+.+|.++.+++ |. .+++.+....
T Consensus 13 ~~~~~LefLGDAVleL~vr~~L~~~-~~-~~g~L~k~~~~~V~a~aqa~~~~~l~~~Lte~E~~~~rrGrna~------- 83 (137)
T 2gsl_A 13 YSGLELAFLGDAIWELEIRKYYLQF-GY-NIPTLNKYVKAKVNAKYQSLIYKKIINDLDEEFKVIGKRAKNSN------- 83 (137)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTS-CB-CHHHHHHHHHHHHSHHHHHHHHHHHGGGSCHHHHHHHHHHHC---------
T ss_pred cCHHHHHHhhHHHHHHHHHHHHHHC-CC-CHHHHHHHHHHHhCHHHHHHHHHHHHHHhCHHHHHHHHhccccc-------
Confidence 5889999999999999999999998 88 99999999999999999999999984 32 2222111110
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCCch----HHHHHHHHHhHhhccccCCceeEEeeeccCCCC
Q 000174 1698 VKEVLEELLKPGFNSFGLGDCKAPKV----LGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDP 1756 (1931)
Q Consensus 1698 ~~~~~~~~~~~~~~~~~~~~~~~~k~----l~D~fEAiiGAiylDsg~~~~~v~~~~~~~l~~ 1756 (1931)
. .+....+++ +||.|||+|||+|+|.|++ .+.+++..++.-
T Consensus 84 ----------~------~~~~k~~si~~Y~~At~fEALiGaLYLd~~~e--rl~~ll~~~~~~ 128 (137)
T 2gsl_A 84 ----------I------KTFPRSCTVMEYKEATALEAIIGAMYLLKKEE--EIKKIINIVIKG 128 (137)
T ss_dssp ----------C------CSCCSSSCHHHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHT
T ss_pred ----------C------CCCCCCCChHHHHHhhHHHHHHHHHHHCCCHH--HHHHHHHHHHHH
Confidence 0 112334564 9999999999999999765 444555555443
|
| >3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A | Back alignment and structure |
|---|
Probab=99.47 E-value=4.1e-14 Score=130.51 Aligned_cols=71 Identities=27% Similarity=0.351 Sum_probs=61.2
Q ss_pred cchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhh
Q 000174 1852 TFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928 (1931)
Q Consensus 1852 ~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~ 1928 (1931)
.||++.|||+||+++++.|.|+++.+ ||+|.+.|++.|.|++. ..|.|...+|||+||+.||+.||+.|.+
T Consensus 3 ~d~Kt~LqE~~q~~~~~~p~Y~~~~~-Gp~h~~~F~~~v~v~g~-----~~~~G~G~~sKK~Aeq~AA~~al~~L~k 73 (73)
T 3adg_A 3 HVFKSRLQEYAQKYKLPTPVYEIVKE-GPSHKSLFQSTVILDGV-----RYNSLPGFFNRKAAEQSAAEVALRELAK 73 (73)
T ss_dssp CSHHHHHHHHHHHTTCCCCEEEEEEE-SSTTSCEEEEEEEETTE-----EEECCSCBSSHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHcCCCCCEEEEEeE-CCCCCCeEEEEEEECCE-----EEEeeeccCCHHHHHHHHHHHHHHHhhC
Confidence 58999999999999999999999886 99999999999999642 2345522379999999999999999864
|
| >2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.9e-14 Score=133.77 Aligned_cols=70 Identities=33% Similarity=0.500 Sum_probs=63.2
Q ss_pred chHHHHHHHHHH-----cCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHh
Q 000174 1853 FTRQTLNDICLR-----RNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLN 1927 (1931)
Q Consensus 1853 n~~~~L~e~~~~-----~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~ 1927 (1931)
||++.|||+||+ ++++.|.|+++.++||+|.+.|++.|.|++..++ .|.| +|||+||+.||+.||+.|.
T Consensus 2 d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~---~G~G---~SKK~AEq~AA~~AL~~L~ 75 (85)
T 2khx_A 2 DPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIG---CGKG---PSIQQAEMGAAMDALEKYN 75 (85)
T ss_dssp CSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECC---CEEE---SSHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEE---EEee---CCHHHHHHHHHHHHHHHHh
Confidence 799999999998 5789999999999999999999999999764344 8899 9999999999999999886
Q ss_pred h
Q 000174 1928 K 1928 (1931)
Q Consensus 1928 ~ 1928 (1931)
.
T Consensus 76 ~ 76 (85)
T 2khx_A 76 F 76 (85)
T ss_dssp S
T ss_pred H
Confidence 4
|
| >1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=9.7e-14 Score=134.39 Aligned_cols=73 Identities=27% Similarity=0.429 Sum_probs=66.1
Q ss_pred CccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1850 TQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1850 ~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
...||++.|||+||+++++ |.|+++.+.||+|.+.|++.|.|++..++ .|.| +|||+|||.||+.||+.|.+.
T Consensus 12 ~~~n~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~---~G~G---~SKK~Aeq~AA~~AL~~L~~~ 84 (97)
T 1x49_A 12 TPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFP---EAKG---RSKQEARNAAAKLAVDILDNE 84 (97)
T ss_dssp CTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCC---CEEE---SSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEE---EEee---CCHHHHHHHHHHHHHHHHHhh
Confidence 4579999999999999997 89999999999999999999999864444 8999 999999999999999999764
|
| >2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-13 Score=130.53 Aligned_cols=71 Identities=28% Similarity=0.376 Sum_probs=64.6
Q ss_pred ccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1851 QTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1851 ~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
..||++.|||+||+++ ..|.|+++.+.||+|.+.|++.|.|++ ..+.|.| +|||+|||.||+.||+.|.+.
T Consensus 7 ~~d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~----~~~~G~G---~SKK~Aeq~AA~~aL~~L~~~ 77 (84)
T 2dix_A 7 GKTPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEG---TSKKLAKHRAAEAAINILKAN 77 (84)
T ss_dssp CCCHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT----EEEEECS---SCTTHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC----EEEEeee---CCHHHHHHHHHHHHHHHHhcc
Confidence 4699999999999998 799999999999999999999999964 3568899 999999999999999999753
|
| >2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2.8e-13 Score=124.85 Aligned_cols=70 Identities=30% Similarity=0.336 Sum_probs=62.9
Q ss_pred ccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1851 QTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1851 ~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
..||++.|||+||+ ++.|.|+++.++||+|.+.|++.|.|++. ...|.| +|||+|+|.||+.||+.|.++
T Consensus 3 ~~d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~----~~~G~G---~SKK~Aeq~AA~~al~~L~~~ 72 (73)
T 2b7t_A 3 PVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQ----VFEGSG---PTKKKAKLHAAEKALRSFVQF 72 (73)
T ss_dssp SSSSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSS----EEEEEE---SSHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCE----EEEeec---CCHHHHHHHHHHHHHHHHhcC
Confidence 35899999999995 78999999999999999999999999753 238899 999999999999999999764
|
| >3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.8e-13 Score=129.80 Aligned_cols=72 Identities=31% Similarity=0.373 Sum_probs=58.3
Q ss_pred CccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1850 TQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1850 ~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
...||++.|||+||+++ ..|.|+++.++||+|.+.|++.|.|++. .+.|+| +|||+|||.||+.||+.|...
T Consensus 12 ~~kd~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~----~~~G~G---~SKK~Aeq~AA~~aL~~L~~~ 83 (90)
T 3llh_A 12 PGKTPISLLQEYGTRIG-KTPVYDLLKAEGQAHQPNFTFRVTVGDT----SCTGQG---PSKKAAKHKAAEVALKHLKGG 83 (90)
T ss_dssp -CCCHHHHHHHHHHHTT-CCCEEEEEEEC-----CCEEEEEEETTE----EEEEEE---SSHHHHHHHHHHHHHHHHC--
T ss_pred cCCCHHHHHHHHHHhcC-CCCEEEEEEeECCCCCCcEEEEEEECCE----EEEEEe---CCHHHHHHHHHHHHHHHHHhc
Confidence 45799999999999998 5899999999999999999999999743 458999 999999999999999999753
|
| >2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-13 Score=140.88 Aligned_cols=105 Identities=13% Similarity=0.088 Sum_probs=82.2
Q ss_pred CCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHHHHHHHHcC--Cc----cceeccccCCCCccCC
Q 000174 1399 TFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKG--LQ----SYIQADRFAPSRWAAP 1472 (1931)
Q Consensus 1399 ~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L~~~a~~~g--L~----~~i~~~~f~~~~w~pp 1472 (1931)
..|.+||||||||||.++++.|||.. |. +||.||.+|+.+||-+.++.++.+++ |. .+++..+
T Consensus 12 ~~~~~~LefLGDAVleL~vr~~L~~~-~~-~~g~L~k~~~~~V~a~aqa~~~~~l~~~Lte~E~~~~rrGr--------- 80 (137)
T 2gsl_A 12 DYSGLELAFLGDAIWELEIRKYYLQF-GY-NIPTLNKYVKAKVNAKYQSLIYKKIINDLDEEFKVIGKRAK--------- 80 (137)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTS-CB-CHHHHHHHHHHHHSHHHHHHHHHHHGGGSCHHHHHHHHHHH---------
T ss_pred hcCHHHHHHhhHHHHHHHHHHHHHHC-CC-CHHHHHHHHHHHhCHHHHHHHHHHHHHHhCHHHHHHHHhcc---------
Confidence 47999999999999999999999998 88 99999999999999999999999984 22 2221111
Q ss_pred CCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCCCCccccccc----hhhhHHHHHhhheee
Q 000174 1473 GVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSSYRVLSSK----TLADVVEALIGVYYV 1548 (1931)
Q Consensus 1473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K----~lADvvEALiGA~~l 1548 (1931)
.... ....-... .+||+|||||||+|+
T Consensus 81 -----------------------------------------------na~~--~~~~k~~si~~Y~~At~fEALiGaLYL 111 (137)
T 2gsl_A 81 -----------------------------------------------NSNI--KTFPRSCTVMEYKEATALEAIIGAMYL 111 (137)
T ss_dssp -----------------------------------------------C--C--CSCCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------cccC--CCCCCCCChHHHHHhhHHHHHHHHHHH
Confidence 0000 00000122 499999999999999
Q ss_pred ccCHHHHHHHHhHhh
Q 000174 1549 EGGKDAANHLMKWIG 1563 (1931)
Q Consensus 1549 ~~G~~~a~~~~~~l~ 1563 (1931)
++|.+.+..|+.++.
T Consensus 112 d~~~erl~~ll~~~~ 126 (137)
T 2gsl_A 112 LKKEEEIKKIINIVI 126 (137)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998764
|
| >1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A | Back alignment and structure |
|---|
Probab=99.37 E-value=3.9e-13 Score=130.52 Aligned_cols=70 Identities=23% Similarity=0.292 Sum_probs=63.1
Q ss_pred cchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhh
Q 000174 1852 TFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928 (1931)
Q Consensus 1852 ~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~ 1928 (1931)
.||++.|||+||++ +..|.|++ .+.||+|.+.|++.|.|++. .....|.| +|||+|||.||+.||+.|.+
T Consensus 6 ~d~Kt~LqE~~Qk~-~~~P~Y~~-~~~Gp~H~~~F~~~V~v~g~--~~~~~G~G---~SKK~Aeq~AA~~AL~~L~~ 75 (99)
T 1whq_A 6 SGIKNFLYAWCGKR-KMTPAYEI-RAVGNKNRQKFMCEVRVEGF--NYAGMGNS---TNKKDAQSNAARDFVNYLVR 75 (99)
T ss_dssp CSSHHHHHHHHHHT-TCCCEEEE-EEEECSSSEEEEEEEECTTC--SCCEEEEE---SSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHC-CCCCeEEE-eeecCCCCCeEEEEEEECCe--EEEEEecc---CCHHHHHHHHHHHHHHHHHh
Confidence 58999999999999 99999998 88999999999999999751 23458999 99999999999999999975
|
| >2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=7.9e-13 Score=125.61 Aligned_cols=71 Identities=27% Similarity=0.280 Sum_probs=63.7
Q ss_pred cchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhhCC
Q 000174 1852 TFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKWYS 1931 (1931)
Q Consensus 1852 ~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~~~ 1931 (1931)
.++++.||||||+++ .|.|+++.++||+|.+.|++.|.|++. ...|.| +|||+|||.||+.||+.|.+..|
T Consensus 14 ~~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~----~~~G~G---~SKK~AEq~AA~~AL~~L~~~~~ 84 (91)
T 2l33_A 14 KHGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQ----KFQGAG---SNKKVAKAYAALAALEKLFPDTP 84 (91)
T ss_dssp SSTTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTE----EEEEEE---SSHHHHHHHHHHHHHHHHCCCCC
T ss_pred cCCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCE----EEEeee---CCHHHHHHHHHHHHHHHHhhcCC
Confidence 478899999999998 889999999999999999999999653 347899 99999999999999999987654
|
| >1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-12 Score=124.73 Aligned_cols=72 Identities=17% Similarity=0.118 Sum_probs=63.0
Q ss_pred ccchHHHHHHHHHHcCCCCCcceeecccCCCCCc-eeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1851 QTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAK-RFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1851 ~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~-~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
..||++.|||+||++++.+ .|+ .+.||+|.+ .|++.|.|++. ....|.| +|||+|||.||+.||+.|.+.
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~-~Y~--~~~Gp~H~~~~F~~~v~v~g~---~~~~G~G---~SKK~Aeq~AA~~AL~~L~~~ 75 (88)
T 1x48_A 5 SSGYIGLVNSFAQKKKLSV-NYE--QCEPNSELPQRFICKCKIGQT---MYGTGSG---VTKQEAKQLAAKEAYQKLLKS 75 (88)
T ss_dssp SSCHHHHHHHHHHHTTCCE-EEE--ECCCSSSSSCCEEEEEEESSC---EEEEEEE---SSHHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHcCCCC-eeE--EeeCCCCCCceEEEEEEECCE---EEEEeec---CCHHHHHHHHHHHHHHHHHhc
Confidence 4699999999999999976 898 679999999 79999999753 2348999 999999999999999999876
Q ss_pred CC
Q 000174 1930 YS 1931 (1931)
Q Consensus 1930 ~~ 1931 (1931)
.|
T Consensus 76 ~~ 77 (88)
T 1x48_A 76 PP 77 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.34 E-value=6e-13 Score=130.52 Aligned_cols=75 Identities=25% Similarity=0.304 Sum_probs=60.3
Q ss_pred CCccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhh
Q 000174 1849 GTQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928 (1931)
Q Consensus 1849 ~~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~ 1928 (1931)
....||++.|||+||+++++.|.|+++.+ ||+|.+.|++.|.|++. ..|.|...+|||+||+.||+.||+.|.+
T Consensus 14 ~~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~-Gp~H~~~F~~~V~v~g~-----~~~~G~G~~SKK~Aeq~AA~~AL~~L~~ 87 (103)
T 2l2n_A 14 SNCYVFKSRLQEYAQKYKLPTPVYEIVKE-GPSHKSLFQSTVILDGV-----RYNSLPGFFNRKAAEQSAAEVALRELAK 87 (103)
T ss_dssp -----CTTHHHHHHHHTTCCCCEEEEEEE-SCSSSCEEEEEEEETTE-----EEECCSCBSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCCCeEEEEeE-cCCCCCeEEEEEEECCE-----EEEEeecCCCHHHHHHHHHHHHHHHHhc
Confidence 34569999999999999999999999885 99999999999999642 2345522279999999999999999975
Q ss_pred h
Q 000174 1929 W 1929 (1931)
Q Consensus 1929 ~ 1929 (1931)
.
T Consensus 88 ~ 88 (103)
T 2l2n_A 88 S 88 (103)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-12 Score=130.45 Aligned_cols=73 Identities=19% Similarity=0.246 Sum_probs=62.5
Q ss_pred ccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecC--CCcceeEECCCCCCHHHHHHHHHHHHHHHHhh
Q 000174 1851 QTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTD--KGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928 (1931)
Q Consensus 1851 ~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~--~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~ 1928 (1931)
..||++.|||+||++++ .|.|+ +.+.||+|.+.|++.|.|+... ......|.| +|||+|+|.||+.||+.|.+
T Consensus 25 ~~d~Kt~LqE~~Qk~~~-~p~Y~-~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G---~SKK~AEq~AA~~AL~~L~~ 99 (113)
T 1uil_A 25 LENAKARLNQYFQKEKI-QGEYK-YTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHG---SNKKLAAQSCALSLVRQLYH 99 (113)
T ss_dssp HHHHHHHHHHHHHHSCC-CCCCE-EEEESCSTTCEEEEEEEEEETTTTEEEEEECCC---SSHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHCCC-CCeEE-EeeECCCCCCcEEEEEEEeeeccCCEEEEEEee---CCHHHHHHHHHHHHHHHHHh
Confidence 36999999999999999 99999 7889999999999999995221 122336777 99999999999999999875
|
| >1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.8e-12 Score=125.98 Aligned_cols=72 Identities=22% Similarity=0.173 Sum_probs=64.3
Q ss_pred CccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1850 TQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1850 ~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
+..||++.|||+||+++++.|.|+++.+.||+ +.|++.|.|++.. ...|.| +|||+|||.||+.||+.|...
T Consensus 14 ~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~--~~F~~~V~v~g~~---~~~G~G---~SKK~Aeq~AA~~AL~~L~~~ 85 (98)
T 1x47_A 14 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVT---YGSGTA---SSKKLAKNKAARATLEILIPD 85 (98)
T ss_dssp TCCCHHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEETTEE---EEEEEE---SSHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEEeECCC--CcEEEEEEECCEE---EEEeee---CCHHHHHHHHHHHHHHHHHhh
Confidence 45799999999999999999999999999998 9999999997533 348899 999999999999999999753
|
| >2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=3.4e-12 Score=123.86 Aligned_cols=70 Identities=34% Similarity=0.397 Sum_probs=62.8
Q ss_pred CccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhh
Q 000174 1850 TQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928 (1931)
Q Consensus 1850 ~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~ 1928 (1931)
...||++.|||+||++ +.|.|+++.++||+|.+.|++.|.|++. ...|.| +|||+|+|.||+.||+.|..
T Consensus 14 ~~~d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~----~~~G~G---~SKK~Aeq~AA~~aL~~L~~ 83 (97)
T 2dmy_A 14 KAIDLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGT----TYEASG---PSKKTAKLHVAVKVLQAMGY 83 (97)
T ss_dssp CSSSCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTE----EEEEEE---SSHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCE----EEEEee---CCHHHHHHHHHHHHHHHhCC
Confidence 4579999999999996 7899999999999999999999999753 237899 99999999999999999963
|
| >3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* | Back alignment and structure |
|---|
Probab=99.31 E-value=9.6e-13 Score=133.01 Aligned_cols=97 Identities=26% Similarity=0.510 Sum_probs=75.5
Q ss_pred ccccCCcEEEcccCCCeEEEEeeccCCCCCCCCCCCCCCCCCCccccHHHHHHhhcCccccCCCCceEEeeccccccccC
Q 000174 1232 AGDLEGRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYCKNLL 1311 (1931)
Q Consensus 1232 ~~~l~~~vv~~~~~~~~y~v~~v~~dltp~s~fp~~~g~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL~~~~~~~~~n~l 1311 (1931)
.+.|.|.+|+++|+++.|+|.+|.++++|.|+|+..+| .+.||.+||+++||+.|.+++||||.++.-.+..+
T Consensus 25 ~k~l~G~~V~t~ynnk~YrI~~I~~~~~p~s~F~~~dg-----~~~T~~eYyk~kY~i~I~~~~QPLL~~~~k~~~~~-- 97 (124)
T 3o7v_X 25 SKELIGLVVLTKYNNKTYRVDDIDWDQNPKSTFKKADG-----SEVSFLEYYRKQYNQEITDLKQPMLVSQPKRRRGP-- 97 (124)
T ss_dssp HHHHTTCEEEETTSSCEEECCEEETTCCTTCEEECTTS-----CEEEHHHHHHHHHCCCCCCSSCCEEEECCC-------
T ss_pred HHHcCCCEEEEeeCCeEEEEeeeCCCCCccCcccCCCC-----CeeeHHHHHHHHhCceecCCCcceEEEeeecccCC--
Confidence 45689999999999999999999999999999987655 57899999999999999999999999863211000
Q ss_pred CCccccccccccccccccccceEEEcCCcccccccCChHH
Q 000174 1312 SPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHPLPGSL 1351 (1931)
Q Consensus 1312 ~~~~~~~~~~~~~~~~~~~k~~~~~L~Pelc~v~~lp~~~ 1351 (1931)
.. ...+ .++||||+|.+.+|+.++
T Consensus 98 -------------~~-~~~~--~iyLipELC~ltGltd~~ 121 (124)
T 3o7v_X 98 -------------GG-TLPG--PAMLIPELCYLTGLTDKM 121 (124)
T ss_dssp -------------------C--CEEECGGGEECCCCC---
T ss_pred -------------CC-CCcc--eEEechhheeccCCChHh
Confidence 00 0112 379999999999999876
|
| >2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B | Back alignment and structure |
|---|
Probab=99.27 E-value=5.6e-12 Score=115.53 Aligned_cols=67 Identities=30% Similarity=0.273 Sum_probs=59.9
Q ss_pred ccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1851 QTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1851 ~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
..||++.|||+| +.|.|+++.++||+|.+.|++.|.|++. ...|.| +|||+|||.||+.||+.|...
T Consensus 3 ~knp~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~----~~~G~G---~SKK~Aeq~AA~~al~~L~~~ 69 (71)
T 2b7v_A 3 GKNPVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQ----FFEGSG---RNKKLAKARAAQSALATVFNL 69 (71)
T ss_dssp SSCHHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEECSSC----EEEEEE---SSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEECCE----EEEEee---CCHHHHHHHHHHHHHHHHHhc
Confidence 368999999994 7899999999999999999999999753 348999 999999999999999999764
|
| >1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.9e-12 Score=122.41 Aligned_cols=69 Identities=19% Similarity=0.020 Sum_probs=60.0
Q ss_pred cchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHh
Q 000174 1852 TFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLN 1927 (1931)
Q Consensus 1852 ~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~ 1927 (1931)
.||++.|||+||++ ...|.|+++.+ ||+|.+.|++.|.|++. ...+.|.| +|||+|+|.||+.||..|.
T Consensus 6 ~D~KT~LQE~~Q~~-~~~p~Y~v~~~-GpdH~k~F~v~v~i~~~--~~~g~G~G---~SKK~AEQ~AA~~AL~~l~ 74 (94)
T 1t4n_A 6 MNAKRQLYSLIGYA-SLRLHYVTVKK-PTAVDPNSIVECRVGDG--TVLGTGVG---RNIKIAGIRAAENALRDKK 74 (94)
T ss_dssp HHHHHHHHHHTCSS-SSCCEEEECCC-CSSSCCSEEEEEECSSS--CEEEEEEE---SSHHHHHHHHHHHHHHCHH
T ss_pred CCchHHHHHHHcCC-CCCCEEEEeee-CCCCCCeEEEEEEECCE--EEEEEEEe---CCHHHHHHHHHHHHHHHHH
Confidence 58999999999997 47899998765 99999999999999742 03458999 9999999999999998765
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-11 Score=161.68 Aligned_cols=130 Identities=16% Similarity=0.164 Sum_probs=97.7
Q ss_pred CCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHH--
Q 000174 302 EQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQ-- 374 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~-- 374 (1931)
.++||+|.+++..+.+ +++++.++||+|||++|++|+.. .+.+++|++||++|+.|+.+++..+
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---------~~~~v~i~~pt~~l~~q~~~~~~~l~~ 72 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---------VKPKVLFVVRTHNEFYPIYRDLTKIRE 72 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---------HCSEEEEEESSGGGHHHHHHHHTTCCC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---------CCCeEEEEcCCHHHHHHHHHHHHHHhh
Confidence 3799999998886542 78999999999999999999875 1468999999999999999999875
Q ss_pred -cCCcEEEEeCCCccc------------------ccch-----------HHH------------------HhhcCCccEE
Q 000174 375 -TGYVVGHYCGEMGQD------------------FWDA-----------QRW------------------QREFDTKQVL 406 (1931)
Q Consensus 375 -~~l~v~~~~G~~~~~------------------~~~~-----------~~w------------------~~~~~~~~Il 406 (1931)
.++++..+.|..+.- .|.. ..+ ++....++||
T Consensus 73 ~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIV 152 (551)
T 3crv_A 73 KRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVI 152 (551)
T ss_dssp SSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEE
T ss_pred hcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEE
Confidence 367888877743210 0110 011 1223578999
Q ss_pred EEcHHHHHHHHhcccccc-cceeEEEEeCCCcccC
Q 000174 407 VMTAQILLNILRHSIIKM-EAINLLILDECHHAVK 440 (1931)
Q Consensus 407 V~Tpq~L~d~L~~~~l~l-~~i~lLV~DEaH~~~~ 440 (1931)
|+||+.|++...+..+.+ ....++||||||++.+
T Consensus 153 V~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 153 ALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp EEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred EeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 999999999865543332 4677999999999975
|
| >3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.7e-11 Score=113.20 Aligned_cols=69 Identities=29% Similarity=0.229 Sum_probs=60.2
Q ss_pred ccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhhC
Q 000174 1851 QTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKWY 1930 (1931)
Q Consensus 1851 ~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~~ 1930 (1931)
..||++.|+|++ +.|.|+++.++||+|.+.|++.|.|++. ...|+| +|||+|||.||+.||+.|.+.+
T Consensus 6 ~K~pl~~L~q~~-----~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~----~~~G~G---~SKK~Aeq~AA~~al~~L~~~~ 73 (75)
T 3p1x_A 6 GKNPVMELNEKR-----RGLKYELISETGGSHDKRFVMEVEVDGQ----KFQGAG---SNKKVAKAYAALAALEKLFPDT 73 (75)
T ss_dssp CCCHHHHHHHHS-----TTCCEEEEEEESCTTSCEEEEEEEETTE----EEEEEE---SSHHHHHHHHHHHHHHHHCTTC
T ss_pred CCCHHHHHHHcC-----CCCEEEEEEeeCCCCCceEEEEEEECCE----EEEEEE---CCHHHHHHHHHHHHHHHHHccC
Confidence 357888888873 5899999999999999999999999642 447999 9999999999999999999877
Q ss_pred C
Q 000174 1931 S 1931 (1931)
Q Consensus 1931 ~ 1931 (1931)
|
T Consensus 74 ~ 74 (75)
T 3p1x_A 74 P 74 (75)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A | Back alignment and structure |
|---|
Probab=99.21 E-value=7.3e-12 Score=130.89 Aligned_cols=99 Identities=24% Similarity=0.497 Sum_probs=73.0
Q ss_pred cccCCcEEEcccCCCeEEEEeeccCCCCCCCCCCCCCCCCCCccccHHHHHHhhcCccccCCCCceEEeeccccccccCC
Q 000174 1233 GDLEGRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYCKNLLS 1312 (1931)
Q Consensus 1233 ~~l~~~vv~~~~~~~~y~v~~v~~dltp~s~fp~~~g~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL~~~~~~~~~n~l~ 1312 (1931)
..|.|.+|.++|+++.|.|.+|.|+++|.|.|+..+| .+.||.+||+++||++|.+++||||.++.-.+..+
T Consensus 26 k~l~g~~V~t~ynnk~YrI~~I~~~~~p~s~F~~~dg-----~~iT~~eYf~~kY~i~I~~~~qPlL~~~~k~~~~~--- 97 (148)
T 3qir_A 26 KLLVGNIVITRYNNRTYRIDDVDWNKTPKDSFTMSDG-----KEITFLEYYSKNYGITVKEEDQPLLIHRPSERQDN--- 97 (148)
T ss_dssp HHHTTCEEEETTTCCEEECCEEETTCCTTSEEECTTS-----CEEEHHHHHHHHHCCCCSCTTCCEEEECCTTCCCC---
T ss_pred HHcCCCEEEEccCCcEEEEeeecCCCCcCccccCCCC-----CcccHHHHHHHHcCCeecCCCCceEEeecccccCC---
Confidence 4679999999999999999999999999999987665 57899999999999999999999999864221100
Q ss_pred CccccccccccccccccccceEEEcCCcccccccCChHHHH
Q 000174 1313 PRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHPLPGSLVR 1353 (1931)
Q Consensus 1313 ~~~~~~~~~~~~~~~~~~k~~~~~L~Pelc~v~~lp~~~~~ 1353 (1931)
.| ....+ .++||||+|.+.+++..+-.
T Consensus 98 ------~~------~~~~~--~~yL~pELC~ltgLtd~~r~ 124 (148)
T 3qir_A 98 ------HG------MLLKG--EILLLPELSFMTGIPEKMKK 124 (148)
T ss_dssp ---------------CCSC--CEEECGGGEECC--------
T ss_pred ------CC------CCccc--eeeecHHHhhhcCCCHHHHh
Confidence 00 00112 37999999999998877643
|
| >1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B | Back alignment and structure |
|---|
Probab=99.20 E-value=5.7e-12 Score=123.18 Aligned_cols=71 Identities=18% Similarity=0.018 Sum_probs=60.8
Q ss_pred ccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhh
Q 000174 1851 QTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928 (1931)
Q Consensus 1851 ~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~ 1928 (1931)
..||++.|||+||+. ...|.|.++.+ ||+|.+.|++.|.|++. ...+.|.| +|||+|+|.||+.||..+..
T Consensus 7 ~~D~KT~LQE~~Q~~-~~~P~Y~vv~~-GPdH~k~F~v~V~i~g~--~~~g~G~G---~SKK~AEQ~AA~~AL~~l~~ 77 (117)
T 1t4o_A 7 DMNAKRQLYSLIGYA-SLRLHYVTVKK-PTAVDPNSIVECRVGDG--TVLGTGVG---RNIKIAGIRAAENALRDKKM 77 (117)
T ss_dssp CTTHHHHHHHHHCCG-GGCCEEEEEEC-CCSSCCCEEEEEECTTC--CEEEEEEE---SSHHHHHHHHHHHHHHCHHH
T ss_pred CCCchHHHHHHHcCC-CCCCEEEEeee-CCCCCCeEEEEEEECCE--EEEEEEEe---CCHHHHHHHHHHHHHHHHHH
Confidence 359999999999995 48899999886 99999999999999742 03458999 99999999999999986653
|
| >2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.9e-11 Score=120.75 Aligned_cols=68 Identities=28% Similarity=0.296 Sum_probs=60.1
Q ss_pred CccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1850 TQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1850 ~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
...||++.|||+||+ |.|+++.++||+|.+.|++.|.|++. ...|.| +|||+|||.||+.||+.|...
T Consensus 35 ~~kd~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~----~~~G~G---~SKK~AEq~AA~~AL~~L~~~ 102 (114)
T 2ljh_A 35 QPKNTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQ----KYLGQG---RSKKVARIEAAATALRSFIQF 102 (114)
T ss_dssp CCSCHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTE----EEEEEE---SSHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCE----EEEeee---CCHHHHHHHHHHHHHHHHHcC
Confidence 346999999999984 89999999999999999999999743 237999 999999999999999999753
|
| >1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=3.4e-11 Score=131.98 Aligned_cols=72 Identities=33% Similarity=0.445 Sum_probs=65.3
Q ss_pred ccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1851 QTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1851 ~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
..||++.|||+||++++. |.|+++.+.||+|.+.|++.|.|++..++ .|.| +|||+||+.||+.||+.|.+.
T Consensus 12 ~~n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~---~G~G---~sKK~Aeq~AA~~al~~L~~~ 83 (179)
T 1qu6_A 12 AGFFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFP---EGEG---RSKKEAKNAAAKLAVEILNKE 83 (179)
T ss_dssp SCSHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCC---EEEC---CSSHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEE---ecCC---CCHHHHHHHHHHHHHHHHhcc
Confidence 469999999999999987 89999999999999999999999764443 8999 999999999999999999754
|
| >2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.8e-11 Score=127.97 Aligned_cols=99 Identities=25% Similarity=0.470 Sum_probs=76.4
Q ss_pred cccCCcEEEcccCCCeEEEEeeccCCCCCCCCCCCCCCCCCCccccHHHHHHhhcCccccCCCCceEEeeccccccccCC
Q 000174 1233 GDLEGRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYCKNLLS 1312 (1931)
Q Consensus 1233 ~~l~~~vv~~~~~~~~y~v~~v~~dltp~s~fp~~~g~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL~~~~~~~~~n~l~ 1312 (1931)
+.|.|.+|.++|+++.|.|.+|.++++|.+.|+..+| .+.||++||+++|++.|.+++||||.++...+..
T Consensus 27 ~~l~g~~V~t~y~nr~yrI~~i~~~~~p~~~F~~~~g-----~~~T~~eYf~~~Y~i~i~~~~qPlL~~~~~~~~~---- 97 (150)
T 2xfm_A 27 KELIGLIVLTKYNNKTYRVDDIDWDQNPKSTFKKADG-----SEVSFLEYYRKQYNQEITDLKQPVLVSQPKRRRG---- 97 (150)
T ss_dssp HHHTTCEEEETTTTEEEECCEEETTCCTTCCCCSSSS-----CCCCHHHHHHTTCCCCCCCSSSCEEEECSSCTTC----
T ss_pred HHhCCcEEEEeeCCceEEeeecCCCCCccCeeecCCC-----ceeeHHHHHHHHcCCccCCCCCCeEEeccccccc----
Confidence 4688999999999999999999999999999996544 5789999999999999999999999986432110
Q ss_pred CccccccccccccccccccceEEEcCCcccccccCChHHHHH
Q 000174 1313 PRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHPLPGSLVRG 1354 (1931)
Q Consensus 1313 ~~~~~~~~~~~~~~~~~~k~~~~~L~Pelc~v~~lp~~~~~~ 1354 (1931)
. .....+ .++||||+|.+.+++..+..-
T Consensus 98 -----~-------~~~~~~--~~~LppELC~i~~L~d~~rs~ 125 (150)
T 2xfm_A 98 -----P-------GGTLPG--PAMLIPELCYLTGLTDKMRND 125 (150)
T ss_dssp -----C-------SSCSSC--CEEECGGGEEECSTTC-----
T ss_pred -----c-------cccccc--eEEecHHHhccCCCCHHHHhh
Confidence 0 000111 378999999999999887554
|
| >1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.1e-10 Score=118.16 Aligned_cols=69 Identities=25% Similarity=0.269 Sum_probs=60.0
Q ss_pred ccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHh
Q 000174 1851 QTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLN 1927 (1931)
Q Consensus 1851 ~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~ 1927 (1931)
..||++.|||+||+++++.|.|+++.+ +|.+.|++.|.|++. ..|.|...+|||+|||.||+.||+.|.
T Consensus 25 ~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~---~H~~~F~v~V~v~g~-----~~g~G~G~~SKK~AEQ~AA~~AL~~L~ 93 (128)
T 1whn_A 25 QITPKMCLLEWCRREKLPQPVYETVQR---TIDRMFCSVVTVAEQ-----KYQSTLWDKSKKLAEQTAAIVCLRSQG 93 (128)
T ss_dssp TCCHHHHHHHHHHHTTCCCCCCCEEEC---SSSCCEEEEEEETTE-----EEEESSCBSSHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEee---cCCCcEEEEEEECCE-----EEEEEeccCCHHHHHHHHHHHHHHHHh
Confidence 469999999999999999999998876 899999999999642 245673349999999999999999996
|
| >3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A | Back alignment and structure |
|---|
Probab=99.00 E-value=7.5e-10 Score=101.95 Aligned_cols=64 Identities=28% Similarity=0.238 Sum_probs=58.4
Q ss_pred CCChHHHHHHHHhhcCC-ceeEEeccCC----eEEEEEEECCEEEEEeec-CCHHHHHHHHHHHHHHHHH
Q 000174 1765 MHPVRELQERCQQQAEG-LEYKASRSGN----LATVEVYIDGVQVGVAQN-PQKKMAQKLAARNALAVLK 1828 (1931)
Q Consensus 1765 ~~P~~~L~e~~~~~~~~-~~y~~~~~g~----~f~v~V~v~g~~~~~g~g-~skk~Ak~~AA~~AL~~L~ 1828 (1931)
.||++.|||+||+++.. +.|++..+|+ .|+|.|.|+|..+++|.| .|||+|++.||+.||..|.
T Consensus 3 ~d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 3 HVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp CSHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHHhh
Confidence 58999999999999886 5999876663 799999999999999999 9999999999999999885
|
| >1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=3.4e-10 Score=107.13 Aligned_cols=72 Identities=22% Similarity=0.148 Sum_probs=62.8
Q ss_pred CCCChHHHHHHHHhhcCCceeEEeccCC----eEEEEEEECCE-EEEEeecCCHHHHHHHHHHHHHHHHHhhhhhhh
Q 000174 1764 PMHPVRELQERCQQQAEGLEYKASRSGN----LATVEVYIDGV-QVGVAQNPQKKMAQKLAARNALAVLKEKETAEA 1835 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~~~y~~~~~g~----~f~v~V~v~g~-~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~ 1835 (1931)
.+|||+.||||+|+.+..|.|++..+|| .|+|+|.|+|. .+|+|.|.|||+|++.||+.||..|.....+..
T Consensus 5 ~~D~KT~LQE~~Q~~~~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~l~ky~~ 81 (94)
T 1t4n_A 5 DMNAKRQLYSLIGYASLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKMLDFYAK 81 (94)
T ss_dssp CHHHHHHHHHHTCSSSSCCEEEECCCCSSSCCSEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CCCchHHHHHHHcCCCCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999976567999876664 79999999999 899999999999999999999999887655443
|
| >3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=1e-09 Score=105.14 Aligned_cols=70 Identities=27% Similarity=0.222 Sum_probs=57.3
Q ss_pred CCCCCChHHHHHHHHhhcCCceeEEe-ccC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhh
Q 000174 1762 TLPMHPVRELQERCQQQAEGLEYKAS-RSG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEKET 1832 (1931)
Q Consensus 1762 ~~~~~P~~~L~e~~~~~~~~~~y~~~-~~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~ 1832 (1931)
...+||++.||||||+++..+.|++. ..| +.|+|.|.|+|. +++|.|.|||+|++.||+.||+.|.....
T Consensus 11 ~~~kd~Ks~LqE~~q~~~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~aL~~L~~~~~ 85 (90)
T 3llh_A 11 NPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDT-SCTGQGPSKKAAKHKAAEVALKHLKGGSM 85 (90)
T ss_dssp --CCCHHHHHHHHHHHTTCCCEEEEEEEC-----CCEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC----
T ss_pred ccCCCHHHHHHHHHHhcCCCCEEEEEEeECCCCCCcEEEEEEECCE-EEEEEeCCHHHHHHHHHHHHHHHHHhccc
Confidence 34689999999999998877899974 455 379999999998 69999999999999999999999976543
|
| >3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.8e-09 Score=102.46 Aligned_cols=67 Identities=25% Similarity=0.290 Sum_probs=59.0
Q ss_pred CCCCChHHHHHHHHhhcCC-ceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhh
Q 000174 1763 LPMHPVRELQERCQQQAEG-LEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEK 1830 (1931)
Q Consensus 1763 ~~~~P~~~L~e~~~~~~~~-~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 1830 (1931)
...|||+.|||+||+++.. +.|++.. .| +.|+|.|.|+|. +++|.|.|||+|++.||+.||..|...
T Consensus 13 ~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 85 (88)
T 3adl_A 13 RGSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVHTV 85 (88)
T ss_dssp TTCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHHcc
Confidence 4579999999999999886 6999754 45 479999999998 899999999999999999999999753
|
| >1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-09 Score=98.63 Aligned_cols=62 Identities=29% Similarity=0.385 Sum_probs=55.6
Q ss_pred CChHHHHHHHHhhcCC-ceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHH
Q 000174 1766 HPVRELQERCQQQAEG-LEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLK 1828 (1931)
Q Consensus 1766 ~P~~~L~e~~~~~~~~-~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~ 1828 (1931)
.|++.|||+||+++.. +.|++.. .| +.|+|.|.|+|. +++|.|.|||+|++.||+.||..|.
T Consensus 1 ~p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEeecCCHHHHHHHHHHHHHHHHh
Confidence 3899999999999987 5999754 45 479999999998 9999999999999999999999885
|
| >1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.8e-09 Score=102.75 Aligned_cols=66 Identities=17% Similarity=0.150 Sum_probs=59.2
Q ss_pred CCCChHHHHHHHHhhcCCceeEEeccC----C-eEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhh
Q 000174 1764 PMHPVRELQERCQQQAEGLEYKASRSG----N-LATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEK 1830 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~~~y~~~~~g----~-~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 1830 (1931)
..|||+.||||||+++..+.|+ ...| + .|+|.|.|+|+.++.|.|.|||+|++.||+.||..|...
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 75 (88)
T 1x48_A 5 SSGYIGLVNSFAQKKKLSVNYE-QCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKS 75 (88)
T ss_dssp SSCHHHHHHHHHHHTTCCEEEE-ECCCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHcCCCCeeE-EeeCCCCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhc
Confidence 3589999999999998888998 5554 3 599999999999999999999999999999999999754
|
| >1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B | Back alignment and structure |
|---|
Probab=98.94 E-value=1.2e-09 Score=106.96 Aligned_cols=75 Identities=23% Similarity=0.168 Sum_probs=64.1
Q ss_pred CCCCChHHHHHHHHhhcCCceeEEeccCC----eEEEEEEECCE-EEEEeecCCHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 000174 1763 LPMHPVRELQERCQQQAEGLEYKASRSGN----LATVEVYIDGV-QVGVAQNPQKKMAQKLAARNALAVLKEKETAEAKE 1837 (1931)
Q Consensus 1763 ~~~~P~~~L~e~~~~~~~~~~y~~~~~g~----~f~v~V~v~g~-~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~~ 1837 (1931)
..+||++.||||+|+.+..+.|++...|| .|+|.|.|+|. .+|.|.|.|||+|++.||+.||..+.....+....
T Consensus 6 ~~~D~KT~LQE~~Q~~~~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~l~Ky~~~r 85 (117)
T 1t4o_A 6 LDMNAKRQLYSLIGYASLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKMLDFYAKQR 85 (117)
T ss_dssp CCTTHHHHHHHHHCCGGGCCEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHHHHHHHTC--
T ss_pred CCCCchHHHHHHHcCCCCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999966557999876674 79999999999 89999999999999999999999988777666543
|
| >2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.1e-09 Score=124.34 Aligned_cols=72 Identities=22% Similarity=0.172 Sum_probs=64.5
Q ss_pred CccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1850 TQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1850 ~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
...||++.|||+||++++..|.|+++.+.||+ +.|++.|.|++..+ +.|.| +|||+||+.||+.||..|...
T Consensus 20 ~~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~--~~F~~~v~v~g~~~---~~G~G---~SKK~Aeq~AA~~aL~~L~~~ 91 (232)
T 2yt4_A 20 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTY---GSGTA---SSKKLAKNKAARATLEILIPD 91 (232)
T ss_dssp TTSCHHHHHHHHHHHTTCCCCEEEEEECSCTT--SCEEEEEEETTEEE---EEEEE---SSHHHHHHHHHHHHHHHHSTT
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEeeECCC--CcEEEEEEECCEEE---eecCC---CCHHHHHHHHHHHHHHHHHhh
Confidence 35799999999999999999999999999998 89999999975433 48899 999999999999999999763
|
| >2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=2.2e-09 Score=101.37 Aligned_cols=66 Identities=23% Similarity=0.257 Sum_probs=58.4
Q ss_pred CCCChHHHHHHHHhhcCCceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhh
Q 000174 1764 PMHPVRELQERCQQQAEGLEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEK 1830 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 1830 (1931)
.+|||+.||||||+++..+.|++.. .| +.|+|.|.|+| .+++|.|.|||+|++.||+.||..|...
T Consensus 7 ~~d~Ks~LqE~~q~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G~G~SKK~Aeq~AA~~aL~~L~~~ 77 (84)
T 2dix_A 7 GKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD-ITCTGEGTSKKLAKHRAAEAAINILKAN 77 (84)
T ss_dssp CCCHHHHHHHHHHHTTCCCEEEEEEEECSSSSCEEEEEEEETT-EEEEECSSCTTHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEEEeECCCCCCeEEEEEEECC-EEEEeeeCCHHHHHHHHHHHHHHHHhcc
Confidence 4799999999999988667999754 44 47999999999 8899999999999999999999999743
|
| >3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2e-09 Score=99.78 Aligned_cols=65 Identities=26% Similarity=0.188 Sum_probs=58.0
Q ss_pred CCChHHHHHHHHhhcCC-ceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 000174 1765 MHPVRELQERCQQQAEG-LEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKE 1829 (1931)
Q Consensus 1765 ~~P~~~L~e~~~~~~~~-~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1829 (1931)
.||++.|||+||+++.. +.|++.. .| +.|+|.|.|+|..++.|.|.|||+|++.||+.||..|..
T Consensus 4 ~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~ 74 (76)
T 3adj_A 4 GLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS 74 (76)
T ss_dssp HHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHHHhh
Confidence 48999999999999886 5999754 44 379999999999999999999999999999999999864
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2e-09 Score=141.35 Aligned_cols=79 Identities=19% Similarity=0.214 Sum_probs=62.9
Q ss_pred CCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc-
Q 000174 302 EQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT- 375 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~- 375 (1931)
.+||+.|.+++..+.+ +++|+.+|||+|||++|++|+...+... +.+++|++||++|+.|+.++++...
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~-----~~kvli~t~T~~l~~Qi~~el~~l~~ 76 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER-----KLKVLYLVRTNSQEEQVIKELRSLSS 76 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH-----TCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc-----CCeEEEECCCHHHHHHHHHHHHHHhh
Confidence 5799999999986532 7899999999999999999988776532 4679999999999999999988743
Q ss_pred --CCcEEEEeCC
Q 000174 376 --GYVVGHYCGE 385 (1931)
Q Consensus 376 --~l~v~~~~G~ 385 (1931)
++++..+.|.
T Consensus 77 ~~~~~~~~l~gr 88 (620)
T 4a15_A 77 TMKIRAIPMQGR 88 (620)
T ss_dssp HSCCCEEECCCH
T ss_pred ccCeEEEEEECC
Confidence 5776666553
|
| >1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.7e-09 Score=105.02 Aligned_cols=69 Identities=23% Similarity=0.236 Sum_probs=60.0
Q ss_pred CCCChHHHHHHHHhhcCCceeEEeccC----CeEEEEEEECC-EEEEEeecCCHHHHHHHHHHHHHHHHHhhhh
Q 000174 1764 PMHPVRELQERCQQQAEGLEYKASRSG----NLATVEVYIDG-VQVGVAQNPQKKMAQKLAARNALAVLKEKET 1832 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~~~y~~~~~g----~~f~v~V~v~g-~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~ 1832 (1931)
..|||+.||||||++...+.|++...| +.|+|.|.|+| ..+++|.|.|||+|++.||+.||..|.....
T Consensus 5 ~~d~Kt~LqE~~Qk~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~ 78 (99)
T 1whq_A 5 SSGIKNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRINE 78 (99)
T ss_dssp CCSSHHHHHHHHHHTTCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHCCCCCeEEEeeecCCCCCeEEEEEEECCeEEEEEeccCCHHHHHHHHHHHHHHHHHhhCC
Confidence 469999999999999445699985445 37999999999 7889999999999999999999999986544
|
| >1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=3.2e-09 Score=103.13 Aligned_cols=67 Identities=28% Similarity=0.244 Sum_probs=60.2
Q ss_pred CCCCChHHHHHHHHhhcCC-ceeEEec-cC--CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 000174 1763 LPMHPVRELQERCQQQAEG-LEYKASR-SG--NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKE 1829 (1931)
Q Consensus 1763 ~~~~P~~~L~e~~~~~~~~-~~y~~~~-~g--~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1829 (1931)
..+||++.||||||+++.. +.|++.. .| +.|+|.|.|+|..++.|.|.|||+|++.||+.||..|..
T Consensus 14 ~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~~~F~~~V~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~ 84 (98)
T 1x47_A 14 NGKSEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIP 84 (98)
T ss_dssp TCCCHHHHHHHHHHHHTCSCCEEEEEECSSSSCCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEEeECCCCcEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHh
Confidence 4679999999999999887 6999754 45 589999999999999999999999999999999999973
|
| >2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=3.1e-09 Score=101.22 Aligned_cols=65 Identities=26% Similarity=0.337 Sum_probs=58.4
Q ss_pred CCCChHHHHHHHHhhcCC-ceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 000174 1764 PMHPVRELQERCQQQAEG-LEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKE 1829 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~-~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1829 (1931)
.+||++.||||||+++.. +.|++.. .| +.|+|.|.|+|. +++|.|.|||+|++.||+.||..|..
T Consensus 15 ~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~ 85 (89)
T 2cpn_A 15 ECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVSG 85 (89)
T ss_dssp CCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEeeeCCHHHHHHHHHHHHHHHHHh
Confidence 579999999999999887 5999754 44 479999999998 99999999999999999999999964
|
| >1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=1.3e-09 Score=105.42 Aligned_cols=68 Identities=26% Similarity=0.306 Sum_probs=60.7
Q ss_pred CCCCChHHHHHHHHhhcCCceeEEe-ccC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhh
Q 000174 1763 LPMHPVRELQERCQQQAEGLEYKAS-RSG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEK 1830 (1931)
Q Consensus 1763 ~~~~P~~~L~e~~~~~~~~~~y~~~-~~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 1830 (1931)
.+.|||+.||||||+++..+.|++. ..| +.|+|.|.|+|+.++.|.|.|||+|++.||+.||..|...
T Consensus 12 ~~~n~Kt~LqE~~Q~~~~~p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 84 (97)
T 1x49_A 12 TPGFYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNE 84 (97)
T ss_dssp CTTHHHHHHHHHHHHHTCCEEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHcCCCCeEEEEEeeCCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHhh
Confidence 4679999999999999988899965 345 4799999999999999999999999999999999999744
|
| >1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=3.9e-09 Score=100.56 Aligned_cols=67 Identities=27% Similarity=0.304 Sum_probs=58.8
Q ss_pred CCCChHHHHHHHHhhcCC-ceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhh
Q 000174 1764 PMHPVRELQERCQQQAEG-LEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEKE 1831 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~-~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~ 1831 (1931)
.+|||+.||||||+++.. +.|++.. .| +.|+|.|.|+|. ++.|.|.|||+|++.||+.||..|....
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~~ 77 (89)
T 1uhz_A 5 SSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VATGTGPNKKIAKKNAAEAMLLQLGYKA 77 (89)
T ss_dssp SSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHTSSH
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHhccC
Confidence 369999999999999886 6999754 44 479999999997 8999999999999999999999997543
|
| >2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.1e-09 Score=104.23 Aligned_cols=69 Identities=26% Similarity=0.204 Sum_probs=59.2
Q ss_pred CCCCChHHHHHHHHhhcCC-ceeEEeccCC----eEEEEEEECCEEEEEeec-CCHHHHHHHHHHHHHHHHHhhh
Q 000174 1763 LPMHPVRELQERCQQQAEG-LEYKASRSGN----LATVEVYIDGVQVGVAQN-PQKKMAQKLAARNALAVLKEKE 1831 (1931)
Q Consensus 1763 ~~~~P~~~L~e~~~~~~~~-~~y~~~~~g~----~f~v~V~v~g~~~~~g~g-~skk~Ak~~AA~~AL~~L~~~~ 1831 (1931)
..+|||+.|||+||+++.. +.|++..+|+ .|+|.|.|+|..++.|.| .|||+|++.||+.||..|....
T Consensus 15 ~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G~G~~SKK~Aeq~AA~~AL~~L~~~~ 89 (103)
T 2l2n_A 15 NCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELAKSS 89 (103)
T ss_dssp ----CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEeecCCCHHHHHHHHHHHHHHHHhccc
Confidence 3579999999999999887 5999876664 799999999999999999 8999999999999999998653
|
| >1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-09 Score=101.82 Aligned_cols=66 Identities=20% Similarity=0.248 Sum_probs=58.9
Q ss_pred CCCCChHHHHHHHHhhcCCceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 000174 1763 LPMHPVRELQERCQQQAEGLEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKE 1829 (1931)
Q Consensus 1763 ~~~~P~~~L~e~~~~~~~~~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1829 (1931)
..+||++.|||+||+++..+.|++.. .| +.|+|.|.|+| .+++|.|.|||+|++.||+.||..|..
T Consensus 5 ~~~d~ks~LqE~~q~~~~~p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G~G~sKK~Aeq~AA~~aL~~L~~ 75 (76)
T 1ekz_A 5 DKKSPISQVHEIGIKRNMTVHFKVLREEGPAHMKNFITACIVGS-IVTEGEGNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CCSCHHHHHHHHHHHTTCCCEEEESSSCCSSSCSCSSEEEEETT-EEEEECCCSTTSSSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHcCCCCEEEEEEeECCCCCCcEEEEEEECC-EEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 35799999999999998889999754 44 47999999999 889999999999999999999999864
|
| >2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.4e-09 Score=101.02 Aligned_cols=65 Identities=29% Similarity=0.369 Sum_probs=56.0
Q ss_pred CCChHHHHHHHHhh-----cC-CceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 000174 1765 MHPVRELQERCQQQ-----AE-GLEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKE 1829 (1931)
Q Consensus 1765 ~~P~~~L~e~~~~~-----~~-~~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1829 (1931)
+|||+.||||||+. +. .+.|++.. .| +.|+|.|+|+|..+++|.|.|||+|++.||+.||..|..
T Consensus 1 ~d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G~G~SKK~AEq~AA~~AL~~L~~ 76 (85)
T 2khx_A 1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNF 76 (85)
T ss_dssp CCSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCEEESSHHHHHHHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhH
Confidence 58999999999973 33 46999754 45 479999999999999999999999999999999988754
|
| >1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=7.9e-09 Score=104.66 Aligned_cols=88 Identities=17% Similarity=0.107 Sum_probs=67.9
Q ss_pred ccCCceeEEeeeccCCCCCCCCCCCCCCChHHHHHHHHhhcCC-ceeEEecc--CCeEEEEEEECCEEEEEeec-CCHHH
Q 000174 1739 SGRDTSVVWQVFQPLLDPMVTPETLPMHPVRELQERCQQQAEG-LEYKASRS--GNLATVEVYIDGVQVGVAQN-PQKKM 1814 (1931)
Q Consensus 1739 sg~~~~~v~~~~~~~l~~~i~~~~~~~~P~~~L~e~~~~~~~~-~~y~~~~~--g~~f~v~V~v~g~~~~~g~g-~skk~ 1814 (1931)
+|+....|.....+++...+ ...+|||+.||||||+++.. +.|++... .+.|+|.|.|+|+.++.|.| .|||+
T Consensus 3 ~~~~~~~vi~~~~~~~r~~~---~~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~~H~~~F~v~V~v~g~~~g~G~G~~SKK~ 79 (128)
T 1whn_A 3 SGSSGSGIIKMAIRFDRRAY---PPQITPKMCLLEWCRREKLPQPVYETVQRTIDRMFCSVVTVAEQKYQSTLWDKSKKL 79 (128)
T ss_dssp CCCSSSSSEEECCCCCGGGS---CTTCCHHHHHHHHHHHTTCCCCCCCEEECSSSCCEEEEEEETTEEEEESSCBSSHHH
T ss_pred CCcCCCCEEeeehhhhhhhc---ccCCCHHHHHHHHHHHcCCCCCeEEEEeecCCCcEEEEEEECCEEEEEEeccCCHHH
Confidence 34444444333344444322 23569999999999999876 59987654 46899999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHh
Q 000174 1815 AQKLAARNALAVLKE 1829 (1931)
Q Consensus 1815 Ak~~AA~~AL~~L~~ 1829 (1931)
|++.||+.||..|..
T Consensus 80 AEQ~AA~~AL~~L~~ 94 (128)
T 1whn_A 80 AEQTAAIVCLRSQGL 94 (128)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999963
|
| >1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A | Back alignment and structure |
|---|
Probab=98.77 E-value=9.2e-09 Score=102.46 Aligned_cols=69 Identities=19% Similarity=0.133 Sum_probs=60.5
Q ss_pred CCCChHHHHHHHHhhcCCceeEEeccC----CeEEEEEEE-----CCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhh
Q 000174 1764 PMHPVRELQERCQQQAEGLEYKASRSG----NLATVEVYI-----DGVQVGVAQNPQKKMAQKLAARNALAVLKEKET 1832 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~~~y~~~~~g----~~f~v~V~v-----~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~ 1832 (1931)
.+|||+.|||+||+++..+.|++...| +.|+|.|.| +|+.++.|.|.|||+|++.||+.||..|.....
T Consensus 25 ~~d~Kt~LqE~~Qk~~~~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~AL~~L~~~~~ 102 (113)
T 1uil_A 25 LENAKARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHLGV 102 (113)
T ss_dssp HHHHHHHHHHHHHHSCCCCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHHHHCCCCCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHHHHHHHhcCC
Confidence 359999999999999887799965555 479999999 588999999999999999999999999986543
|
| >2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A | Back alignment and structure |
|---|
Probab=98.75 E-value=1.8e-08 Score=92.71 Aligned_cols=64 Identities=28% Similarity=0.382 Sum_probs=55.3
Q ss_pred CCCChHHHHHHHHhhcCCceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 000174 1764 PMHPVRELQERCQQQAEGLEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKE 1829 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1829 (1931)
..||++.|||+||+ ...+.|++.. .| +.|+|.|.|+|..+ +|.|.|||+|++.||+.||..|..
T Consensus 3 ~~d~Ks~Lqe~~q~-~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~ 71 (73)
T 2b7t_A 3 PVLPKNALMQLNEI-KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQ 71 (73)
T ss_dssp SSSSHHHHHHHHHH-CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHcC-CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-EeecCCHHHHHHHHHHHHHHHHhc
Confidence 46899999999995 4456999754 44 47999999999886 999999999999999999999874
|
| >2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=3.3e-08 Score=95.92 Aligned_cols=65 Identities=29% Similarity=0.341 Sum_probs=56.8
Q ss_pred CCCCChHHHHHHHHhhcCCceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 000174 1763 LPMHPVRELQERCQQQAEGLEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKE 1829 (1931)
Q Consensus 1763 ~~~~P~~~L~e~~~~~~~~~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1829 (1931)
..+|||+.||||||++ ..+.|++.. .| +.|+|.|.|+|..+ +|.|.|||+|++.||+.||..|..
T Consensus 14 ~~~d~Kt~LqE~~Q~~-~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~aL~~L~~ 83 (97)
T 2dmy_A 14 KAIDLMNALMRLNQIR-PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGY 83 (97)
T ss_dssp CSSSCTHHHHHHHHHS-CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHhcC-CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHhCC
Confidence 3579999999999996 457999764 45 47999999999987 999999999999999999999953
|
| >2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=4.1e-08 Score=93.31 Aligned_cols=65 Identities=29% Similarity=0.366 Sum_probs=56.9
Q ss_pred CCCCChHHHHHHHHhhcCCceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 000174 1763 LPMHPVRELQERCQQQAEGLEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKE 1829 (1931)
Q Consensus 1763 ~~~~P~~~L~e~~~~~~~~~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1829 (1931)
+..++++.||||||+++ .+.|++.. .| +.|+|.|.|+|..+ .|.|.|||+|++.||+.||..|..
T Consensus 12 ~~~~~K~~LqEl~Qk~~-~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~ 81 (91)
T 2l33_A 12 LTKHGKNPVMELNEKRR-GLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFP 81 (91)
T ss_dssp CCSSTTCHHHHHHHHCS-SCEEEEEEEEECSSCEEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCC
T ss_pred hccCCCCHHHHHHHhCC-CCeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHhh
Confidence 45688999999999988 78999754 44 37999999999885 999999999999999999999964
|
| >2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.8e-08 Score=97.32 Aligned_cols=62 Identities=34% Similarity=0.387 Sum_probs=55.0
Q ss_pred CCCChHHHHHHHHhhcCCceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhh
Q 000174 1764 PMHPVRELQERCQQQAEGLEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEK 1830 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 1830 (1931)
.+|||+.||||||+ +.|++.. .| +.|+|+|.|+|..+ +|.|.|||+|++.||+.||+.|...
T Consensus 36 ~kd~Ks~LQE~~q~----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~ 102 (114)
T 2ljh_A 36 PKNTVAMLNELRHG----LIYKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALRSFIQF 102 (114)
T ss_dssp CSCHHHHHHHHCSC----CEEEEEEEECCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHccC----CeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHHcC
Confidence 57999999999974 8999754 44 47999999999998 9999999999999999999999754
|
| >2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.56 E-value=7.3e-08 Score=110.01 Aligned_cols=69 Identities=30% Similarity=0.342 Sum_probs=58.7
Q ss_pred cchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1852 TFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1852 ~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
.+|++.|+++++. +..|.|+++.++||+|.+.|++.|.|++. ..+|.| +|||+|||.||+.||+.|...
T Consensus 4 ~~~K~~l~~l~e~--~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~----~~~G~G---~SKK~Aeq~AA~~al~~l~~~ 72 (236)
T 2l3j_A 4 VLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQ----VFEGSG---PTKKKAKLHAAEKALRSFVQF 72 (236)
T ss_dssp CCTHHHHHHHHHH--CSSCEEEEEEEESCTTSCEEEEEEEETTE----EEEEEE---SHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCcCHHHHHhhc--CCCceEEEEeccCCCCCCeEEEEEEECCE----EEEEec---CChHHHHHHHHHHHHHHHHhc
Confidence 4667777777654 57899999999999999999999999653 348999 999999999999999999763
|
| >2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B | Back alignment and structure |
|---|
Probab=98.49 E-value=2.3e-07 Score=84.85 Aligned_cols=62 Identities=32% Similarity=0.329 Sum_probs=53.0
Q ss_pred CCCChHHHHHHHHhhcCCceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhh
Q 000174 1764 PMHPVRELQERCQQQAEGLEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEK 1830 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 1830 (1931)
.+||++.|+|+| ..+.|++.. .| +.|+|.|.|+|.. .+|.|.|||+|++.||+.||..|...
T Consensus 3 ~knp~s~L~E~~----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~-~~G~G~SKK~Aeq~AA~~al~~L~~~ 69 (71)
T 2b7v_A 3 GKNPVMILNELR----PGLKYDFLSESGESHAKSFVMSVVVDGQF-FEGSGRNKKLAKARAAQSALATVFNL 69 (71)
T ss_dssp SSCHHHHHHHHC----CSCEEEEEECCCCTTTCCEEEEEECSSCE-EEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC----CCCEEEEEEeECCCCCceEEEEEEECCEE-EEEeeCCHHHHHHHHHHHHHHHHHhc
Confidence 479999999994 457999754 44 4799999999987 49999999999999999999998754
|
| >3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.41 E-value=4.7e-07 Score=83.45 Aligned_cols=62 Identities=34% Similarity=0.443 Sum_probs=51.2
Q ss_pred CCCChHHHHHHHHhhcCCceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhh
Q 000174 1764 PMHPVRELQERCQQQAEGLEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEK 1830 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 1830 (1931)
.+||+++|+|++ ..+.|++.. .| +.|+|.|.|+|..+ .|.|.|||+|++.||+.||..|...
T Consensus 6 ~K~pl~~L~q~~----~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~~ 72 (75)
T 3p1x_A 6 GKNPVMELNEKR----RGLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPD 72 (75)
T ss_dssp CCCHHHHHHHHS----TTCCEEEEEEESCTTSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHcC----CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EEEECCHHHHHHHHHHHHHHHHHcc
Confidence 467777777763 467999754 45 47999999999987 9999999999999999999999753
|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A | Back alignment and structure |
|---|
Probab=98.27 E-value=3.7e-06 Score=98.79 Aligned_cols=123 Identities=11% Similarity=0.034 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCc
Q 000174 702 VTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRV 781 (1931)
Q Consensus 702 ~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~ 781 (1931)
.|.|+..|-++|... ...++|++||++...+.+.|..+|.. .++....+.| .....+++ -++..+
T Consensus 107 ~SGKf~~L~~LL~~l-~~~~~kVLIfsq~t~~LDilE~~l~~----~~~~y~RlDG-----~~~~~~~k-----~~~~~~ 171 (328)
T 3hgt_A 107 NSGKFSVLRDLINLV-QEYETETAIVCRPGRTMDLLEALLLG----NKVHIKRYDG-----HSIKSAAA-----ANDFSC 171 (328)
T ss_dssp TCHHHHHHHHHHHHH-TTSCEEEEEEECSTHHHHHHHHHHTT----SSCEEEESSS-----CCC------------CCSE
T ss_pred cCccHHHHHHHHHHH-HhCCCEEEEEECChhHHHHHHHHHhc----CCCceEeCCC-----Cchhhhhh-----cccCCc
Confidence 589999999999987 45689999999999999999999987 7899999999 32222211 124566
Q ss_pred eEEEEecccccCCC-----CCCCCEEEEcCCCCCHHHH-HHhhccCCCCC--Cc----EEEEEecCChhH
Q 000174 782 TLLVATSVAEEGLD-----IRQCNVVIRFDLAKTVLAY-IQSRGRARKPG--SD----YILMIERGNLSH 839 (1931)
Q Consensus 782 ~vLVaTdVaeeGlD-----ip~~~lVI~fD~p~s~~~y-iQr~GRa~R~G--s~----~ivlv~~~~~~~ 839 (1931)
.+.+.|+.++-|+| +..++.||.||..||+..- +|++-|++|.| ++ .+-++..+..+|
T Consensus 172 ~i~Lltsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 172 TVHLFSSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp EEEEEESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred eEEEEECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 66666888888886 6889999999999999996 99999999984 33 333445554444
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00022 Score=93.60 Aligned_cols=68 Identities=13% Similarity=0.100 Sum_probs=51.2
Q ss_pred cHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHH
Q 000174 305 RPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQ 374 (1931)
Q Consensus 305 ~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~ 374 (1931)
.+.|+++++.++. +.+++.+++|+|||.+...++..+.... ...+.++++++||..++.|..+.+...
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~--~~~~~~vll~APTg~AA~~L~e~~~~~ 219 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA--DGERCRIRLAAPTGKAAARLTESLGKA 219 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTC--SSCCCCEEEEBSSHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhh--hcCCCeEEEEeCChhHHHHHHHHHHHH
Confidence 7899999999998 7899999999999955444333332210 123457999999999999988877653
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00027 Score=93.70 Aligned_cols=66 Identities=20% Similarity=0.119 Sum_probs=56.0
Q ss_pred CCCcHHHHHHHHHHhc-cC-EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH
Q 000174 302 EQARPYQLDVLEQAKK-KN-TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE 373 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-~n-~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~ 373 (1931)
..|.+.|++|+..++. ++ .||.+|.|||||.+.+..|.+++.. +.++|+++||..-|.+..+.+..
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~------~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ------GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT------TCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC------CCeEEEEcCchHHHHHHHHHHHh
Confidence 4689999999999987 44 6999999999999888888777652 45799999999999988888865
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00039 Score=91.63 Aligned_cols=130 Identities=15% Similarity=0.195 Sum_probs=87.2
Q ss_pred CCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcE
Q 000174 301 EEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVV 379 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v 379 (1931)
...+.+.|.+++..++. .-++|.+|+|+|||.+....+.+++.. .+.++++++||...+.+..+.+... ++++
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~-----~~~~ilv~a~tn~A~~~l~~~l~~~-~~~~ 251 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-----GNGPVLVCAPSNIAVDQLTEKIHQT-GLKV 251 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTS-----SSCCEEEEESSHHHHHHHHHHHHTT-TCCE
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHc-----CCCeEEEEeCcHHHHHHHHHHHHhc-CCeE
Confidence 45789999999999887 567999999999999877777665431 3567999999999999988888653 4444
Q ss_pred EEEeCCCcc------cc----------------------------cc---hHHH--------HhhcCCccEEEEcHHHHH
Q 000174 380 GHYCGEMGQ------DF----------------------------WD---AQRW--------QREFDTKQVLVMTAQILL 414 (1931)
Q Consensus 380 ~~~~G~~~~------~~----------------------------~~---~~~w--------~~~~~~~~IlV~Tpq~L~ 414 (1931)
.-+.+.... .. .. ...+ ...+...+||++|...+.
T Consensus 252 ~R~~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~~ 331 (624)
T 2gk6_A 252 VRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAG 331 (624)
T ss_dssp EECCCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGGG
T ss_pred EeeccccchhhccchhhhhHHHHHHhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhhc
Confidence 333221000 00 00 0001 123457889999975432
Q ss_pred HHHhcccccccceeEEEEeCCCcccC
Q 000174 415 NILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 415 d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
+..+.-..+++||||||..+..
T Consensus 332 ----~~~l~~~~fd~viIDEAsQ~~e 353 (624)
T 2gk6_A 332 ----DPRLAKMQFRSILIDESTQATE 353 (624)
T ss_dssp ----CGGGTTCCCSEEEETTGGGSCH
T ss_pred ----chhhhcCCCCEEEEecccccCc
Confidence 2223335789999999987754
|
| >3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00015 Score=73.64 Aligned_cols=80 Identities=21% Similarity=0.319 Sum_probs=63.1
Q ss_pred cccCCcEEEccc------CCCeEEEEeeccCCCCCCCCCCCCCCCCCCccccHHHHHHhhcCccccCCCCceEEeecccc
Q 000174 1233 GDLEGRIVTAAH------SGKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSY 1306 (1931)
Q Consensus 1233 ~~l~~~vv~~~~------~~~~y~v~~v~~dltp~s~fp~~~g~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL~~~~~~~ 1306 (1931)
..|.|..|.+.| +++.|.|.++.++-.+...|+.+ | ...|+.+||+++ ++.+.++++|+|.+..
T Consensus 33 k~LkGl~V~~~~~~~~~~~~r~yrI~~l~~~~a~~~~F~~~-g-----~~isV~~Yf~~~-~~~l~~p~lP~l~~g~--- 102 (124)
T 3mj0_A 33 PFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHD-G-----KKVTIASYFHSR-NYPLKFPQLHCLNVGS--- 102 (124)
T ss_dssp HHHTTCEEEECCCGGGTCCCEEEECCEEEEEETTTCEEESS-S-----SEEEHHHHHHTT-TCCCSCSSSEEEECCB---
T ss_pred HHhCCeEEEEecccccccCCceEEEEeccCCCccccEEeeC-C-----cEEEHHHHHHHc-CCcccCCCCCeEeecC---
Confidence 356888888777 45789999999888888889863 4 478999999998 9999999999998531
Q ss_pred ccccCCCccccccccccccccccccceEEEcCCccccccc
Q 000174 1307 CKNLLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHP 1346 (1931)
Q Consensus 1307 ~~n~l~~~~~~~~~~~~~~~~~~~k~~~~~L~Pelc~v~~ 1346 (1931)
..+ ..+||+|+|.+.|
T Consensus 103 ----------------------~~~--~~ylP~Elc~i~~ 118 (124)
T 3mj0_A 103 ----------------------SIK--SILLPIELCSIEE 118 (124)
T ss_dssp ----------------------TTB--CCEECGGGEEEEC
T ss_pred ----------------------CCC--ceEecceeEEECC
Confidence 001 2589999999865
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00078 Score=90.63 Aligned_cols=129 Identities=14% Similarity=0.119 Sum_probs=87.3
Q ss_pred CCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcE
Q 000174 301 EEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVV 379 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v 379 (1931)
...+.+.|.+|+..++. .-++|.++.|||||.+....+.+++.. .+.++++++||...+.+..+.+... ++++
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~-----~~~~ILv~a~tn~A~d~l~~rL~~~-g~~i 431 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKI-----HKDRILVCAPSNVAVDHLAAKLRDL-GLKV 431 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHH-----HCCCEEEEESSHHHHHHHHHHHHHT-TCCE
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhC-----CCCeEEEEcCcHHHHHHHHHHHHhh-CccE
Confidence 45789999999999988 457999999999998887777666542 2457999999999999998888763 4444
Q ss_pred EEEeCCCc------ccc---------------------------cc---hH--------HHHhhcCCccEEEEcHHHHHH
Q 000174 380 GHYCGEMG------QDF---------------------------WD---AQ--------RWQREFDTKQVLVMTAQILLN 415 (1931)
Q Consensus 380 ~~~~G~~~------~~~---------------------------~~---~~--------~w~~~~~~~~IlV~Tpq~L~d 415 (1931)
.-+.+... ... .. .. .....+...+||++|...+.
T Consensus 432 lR~g~~~r~~i~~~~~~~tl~~~~~~~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~- 510 (802)
T 2xzl_A 432 VRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAG- 510 (802)
T ss_dssp EECCCGGGTTSCCTTGGGBHHHHHHTTCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETTGGG-
T ss_pred EeecccchhhhcchhhhhhHHHHHHhhcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechhhcC-
Confidence 33221100 000 00 00 01123457889999876543
Q ss_pred HHhcccccccceeEEEEeCCCcccC
Q 000174 416 ILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 416 ~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
+..+. ..+++||||||..+..
T Consensus 511 ---~~~L~-~~fd~viIDEA~q~~e 531 (802)
T 2xzl_A 511 ---DKRLD-TKFRTVLIDESTQASE 531 (802)
T ss_dssp ---CTTCC-SCCSEEEETTGGGSCH
T ss_pred ---hHHHh-ccCCEEEEECccccch
Confidence 22232 2899999999988754
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00093 Score=89.78 Aligned_cols=74 Identities=18% Similarity=0.161 Sum_probs=58.3
Q ss_pred CCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCc
Q 000174 300 PEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYV 378 (1931)
Q Consensus 300 ~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~ 378 (1931)
....+.+.|.+++..++. .-++|.++.|+|||.+....+.+++.. .+.++++++||..-+.+..+.+.. .+++
T Consensus 353 ~~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~-----~~~~ilv~a~tn~A~~~l~~~l~~-~g~~ 426 (800)
T 2wjy_A 353 GLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-----GNGPVLVCAPSNIAVDQLTEKIHQ-TGLK 426 (800)
T ss_dssp TSCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTT-----CSSCEEEEESSHHHHHHHHHHHHT-TTCC
T ss_pred cccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHc-----CCCcEEEEcCcHHHHHHHHHHHHH-hCcc
Confidence 345789999999999988 557999999999998877776655431 346799999999999988888765 3444
Q ss_pred E
Q 000174 379 V 379 (1931)
Q Consensus 379 v 379 (1931)
+
T Consensus 427 v 427 (800)
T 2wjy_A 427 V 427 (800)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0022 Score=81.35 Aligned_cols=66 Identities=12% Similarity=0.120 Sum_probs=49.6
Q ss_pred hhcCCCCCCcHHHHHHHHHHhc------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHH
Q 000174 296 KEKMPEEQARPYQLDVLEQAKK------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQ 366 (1931)
Q Consensus 296 l~~~~~~~~~~~Q~eai~~~l~------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q 366 (1931)
..++.+..|++-|++++..++. +.++|.++.|||||.+....+..+... ....+++++||...+..
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~-----~~~~il~~a~T~~Aa~~ 89 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALIST-----GETGIILAAPTHAAKKI 89 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHT-----TCCCEEEEESSHHHHHH
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-----CCceEEEecCcHHHHHH
Confidence 3447788999999999998753 378999999999998877777666542 22469999999766543
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0046 Score=80.17 Aligned_cols=63 Identities=14% Similarity=0.063 Sum_probs=49.0
Q ss_pred CCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHH
Q 000174 301 EEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAE 369 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~ 369 (1931)
...+++.|++++..++. +.++|.++.|+|||.+...++..+.. .+.++++++||...+....+
T Consensus 187 ~~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~------~g~~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAES------LGLEVGLCAPTGKAARRLGE 250 (574)
T ss_dssp TTTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHH------TTCCEEEEESSHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHh------cCCeEEEecCcHHHHHHhHh
Confidence 35789999999999988 77899999999999876665544332 24679999999877665443
|
| >4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0045 Score=83.46 Aligned_cols=84 Identities=21% Similarity=0.408 Sum_probs=59.7
Q ss_pred cccCCcEEEccc---CCCeEEEEeeccCCCCCCCCCC--CCCCCCCCccccHHHHHHhhcCccccCCCCceEEeeccccc
Q 000174 1233 GDLEGRIVTAAH---SGKRFYVESIRYEMTAESSFPR--KEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYC 1307 (1931)
Q Consensus 1233 ~~l~~~vv~~~~---~~~~y~v~~v~~dltp~s~fp~--~~g~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL~~~~~~~~ 1307 (1931)
..|.|..|.+.| +++.|.|.++.+.-.....|+. .+| .....|+.+||+++|+++|.+++||+|.+..-
T Consensus 262 k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~g---~~~~iSV~dYFk~kYni~L~~p~lPll~~g~~--- 335 (861)
T 4f3t_A 262 KEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESG---QTVECTVAQYFKDRHKLVLRYPHLPCLQVGQE--- 335 (861)
T ss_dssp HHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSSS---CEEEEEHHHHHHHHHCCCCSCTTSEEEEESCT---
T ss_pred HHhCCcEEEEeecCCCCceEEEeeCCCCCCCCcEEEeecCCC---CceeEEHHHHHHHhcCcccCCCCCceEEecCC---
Confidence 457899998778 4578999999763222334642 222 11367999999999999999999999986310
Q ss_pred cccCCCccccccccccccccccccceEEEcCCccccccc
Q 000174 1308 KNLLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHP 1346 (1931)
Q Consensus 1308 ~n~l~~~~~~~~~~~~~~~~~~~k~~~~~L~Pelc~v~~ 1346 (1931)
.+ .++||||+|.+.+
T Consensus 336 ----------------------~~--~~ylP~Elc~i~~ 350 (861)
T 4f3t_A 336 ----------------------QK--HTYLPLEVCNIVA 350 (861)
T ss_dssp ----------------------TT--TEEEEGGGEEECT
T ss_pred ----------------------CC--CccccceeEEeeC
Confidence 01 1689999999873
|
| >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.11 Score=63.39 Aligned_cols=70 Identities=21% Similarity=0.242 Sum_probs=53.9
Q ss_pred CCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000174 302 EQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT 375 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~ 375 (1931)
..|+|||+..+..+.. +-+++..+-+.|||.++...+...+.. .++..+++++||...+..+.+.++...
T Consensus 162 ~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~----~~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF----NKDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS----SSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 5799999999987644 668999999999998877766544332 345679999999988877777776543
|
| >2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.015 Score=56.67 Aligned_cols=73 Identities=15% Similarity=0.169 Sum_probs=50.5
Q ss_pred ccchHHHHHHHHHHcC-----CCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHH
Q 000174 1851 QTFTRQTLNDICLRRN-----WPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLEL 1925 (1931)
Q Consensus 1851 ~~n~~~~L~e~~~~~~-----~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~ 1925 (1931)
..|.++.|+.||++.- -..|.|.+...... ...| |+|++-. ..-...-.|.+++|||.||+.||-.|..+
T Consensus 3 ~~sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~~--~~~~-c~v~LP~--~splr~i~g~~~~sk~~AK~sAAf~Ac~~ 77 (102)
T 2kou_A 3 GGSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDEF--GGTI-CRITLPA--NAPISEIESSLLPSTEAAKKDACLKAVHE 77 (102)
T ss_dssp CSHHHHHHHHHHTTSSSCTTCCSSCEEEEEECCGG--GCEE-EEEECCT--TCSSCCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccccCccceEEEeEeecC--CCeE-EEEECCC--CCCCCeeeCCccccHHHHHHHHHHHHHHH
Confidence 3578999999999864 25688875433221 2345 5555432 22233567788999999999999999999
Q ss_pred Hhh
Q 000174 1926 LNK 1928 (1931)
Q Consensus 1926 L~~ 1928 (1931)
|.+
T Consensus 78 L~~ 80 (102)
T 2kou_A 78 LHN 80 (102)
T ss_dssp HHH
T ss_pred HHH
Confidence 976
|
| >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.29 Score=63.78 Aligned_cols=146 Identities=15% Similarity=0.201 Sum_probs=86.5
Q ss_pred CCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcC----
Q 000174 302 EQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG---- 376 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~---- 376 (1931)
..|+|||+..+..+-. +.+++..+-|+|||.+....+...+.. .++..+++++|+...+....+.++..+.
T Consensus 162 ~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~----~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~ 237 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF----NKDKAVGILAHKGSMSAEVLDRTKQAIELLPD 237 (592)
T ss_dssp CCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT----SSSCEEEEEESSHHHHHHHHHHHHHHHTTSCT
T ss_pred CcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh----CCCCeEEEEECCHHHHHHHHHHHHHHHHhChH
Confidence 5799999999987644 678999999999998776655444432 2456899999999998888877776542
Q ss_pred -CcEEEEeCCCcccccchHHHHhhcCCccEEEE--cHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHh
Q 000174 377 -YVVGHYCGEMGQDFWDAQRWQREFDTKQVLVM--TAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYH 453 (1931)
Q Consensus 377 -l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~--Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~ 453 (1931)
++..... +....+. ...+..|.+. .|..+. | .+.+++|+||+|...+. ..++..+..
T Consensus 238 ~~~~~~~~-------~~~~~i~-~~nGs~i~~~s~~~~~lr-----G----~~~~~~iiDE~~~~~~~---~~l~~~~~~ 297 (592)
T 3cpe_A 238 FLQPGIVE-------WNKGSIE-LDNGSSIGAYASSPDAVR-----G----NSFAMIYIEDCAFIPNF---HDSWLAIQP 297 (592)
T ss_dssp TTSCCEEE-------ECSSEEE-ETTSCEEEEEECCHHHHH-----H----SCCSEEEEETGGGCTTH---HHHHHHHHH
T ss_pred hhcccccc-------CCccEEE-ecCCCEEEEEeCCCCCcc-----C----CCcceEEEehhccCCch---hHHHHHHHH
Confidence 1111000 0000000 0124444433 244443 2 24789999999988541 234343333
Q ss_pred hcCCCCCcEEEEEeecCCC
Q 000174 454 TTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 454 ~~~~~~~p~iLgLTATP~~ 472 (1931)
.......+++ .++.||..
T Consensus 298 ~l~~~~~~~i-i~isTP~~ 315 (592)
T 3cpe_A 298 VISSGRRSKI-IITTTPNG 315 (592)
T ss_dssp HHSSSSCCEE-EEEECCCT
T ss_pred HhccCCCceE-EEEeCCCC
Confidence 3322223544 45568864
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.054 Score=70.90 Aligned_cols=90 Identities=12% Similarity=0.123 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEE
Q 000174 707 QSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVA 786 (1931)
Q Consensus 707 ~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVa 786 (1931)
..+.+.|...-.....+++||+.+....+.+++.|..+ ..+ .. .+++...+.+++++|+ ++-.||+|
T Consensus 434 ~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~~~----~~~---~~-----q~~~~~~~~~ll~~f~-~~~~vL~~ 500 (620)
T 4a15_A 434 DRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVSFE----HMK---EY-----RGIDQKELYSMLKKFR-RDHGTIFA 500 (620)
T ss_dssp HHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCCSC----CEE---CC-----TTCCSHHHHHHHHHHT-TSCCEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHhc----chh---cc-----CCCChhHHHHHHHHhc-cCCcEEEE
Confidence 34444444331223557999999999888887766521 111 21 2556678899999999 88889999
Q ss_pred ec--ccccCCCCCC--CCEEEEcCCCC
Q 000174 787 TS--VAEEGLDIRQ--CNVVIRFDLAK 809 (1931)
Q Consensus 787 Td--VaeeGlDip~--~~lVI~fD~p~ 809 (1931)
|. ...||||+|+ +..||...+|.
T Consensus 501 v~~gsf~EGiD~~g~~l~~viI~~lPf 527 (620)
T 4a15_A 501 VSGGRLSEGINFPGNELEMIILAGLPF 527 (620)
T ss_dssp ETTSCC--------CCCCEEEESSCCC
T ss_pred EecCceeccccCCCCceEEEEEEcCCC
Confidence 85 8999999999 88999988874
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.54 E-value=0.5 Score=56.03 Aligned_cols=26 Identities=8% Similarity=-0.075 Sum_probs=21.8
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
.+++|++++|+|||.++-..+.++-.
T Consensus 46 ~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 46 KLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp CEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57899999999999998888766543
|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.078 Score=70.33 Aligned_cols=91 Identities=15% Similarity=0.071 Sum_probs=70.3
Q ss_pred CCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEE
Q 000174 302 EQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGH 381 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~ 381 (1931)
..+++-|.+++.. ..+.++|.++.|||||.+.+.-|.+++... ..+..++|+|++|...+.+..+.+...++..
T Consensus 8 ~~Ln~~Q~~av~~-~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~--~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~--- 81 (647)
T 3lfu_A 8 DSLNDKQREAVAA-PRSNLLVLAGAGSGKTRVLVHRIAWLMSVE--NCSPYSIMAVTFTNKAAAEMRHRIGQLMGTS--- 81 (647)
T ss_dssp TTCCHHHHHHHTC-CSSCEEEEECTTSCHHHHHHHHHHHHHHTS--CCCGGGEEEEESSHHHHHHHHHHHHHHHCSC---
T ss_pred hcCCHHHHHHHhC-CCCCEEEEECCCCCHHHHHHHHHHHHHHhC--CCChhhEEEEeccHHHHHHHHHHHHHHhccc---
Confidence 5799999999972 348899999999999999988888777632 1233579999999999999999988865321
Q ss_pred EeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHh
Q 000174 382 YCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILR 418 (1931)
Q Consensus 382 ~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~ 418 (1931)
...+.|+|...+...+-
T Consensus 82 --------------------~~~~~v~Tfhs~~~~il 98 (647)
T 3lfu_A 82 --------------------QGGMWVGTFHGLAHRLL 98 (647)
T ss_dssp --------------------CTTCEEEEHHHHHHHHH
T ss_pred --------------------cCCcEEEcHHHHHHHHH
Confidence 13577899988876543
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=93.38 E-value=0.24 Score=54.01 Aligned_cols=36 Identities=19% Similarity=0.107 Sum_probs=27.1
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCCh
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKV 361 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~ 361 (1931)
.++.+++|+|||..++-.+.++.. .+.+++++.|..
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~------~g~~v~~~~~~~ 41 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKL------GKKKVAVFKPKI 41 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH------TTCEEEEEEEC-
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEeecc
Confidence 578999999999988777665543 245788888873
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=92.78 E-value=0.1 Score=64.45 Aligned_cols=83 Identities=17% Similarity=0.049 Sum_probs=54.7
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhh
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQRE 399 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~ 399 (1931)
.++.++.|+|||....-.+. ....+||+||++++..|.+.+... |..
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~-----------~~~~lVlTpT~~aa~~l~~kl~~~---------~~~------------- 210 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVN-----------FEEDLILVPGRQAAEMIRRRANAS---------GII------------- 210 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCC-----------TTTCEEEESCHHHHHHHHHHHTTT---------SCC-------------
T ss_pred EEEEcCCCCCHHHHHHHHhc-----------cCCeEEEeCCHHHHHHHHHHhhhc---------Ccc-------------
Confidence 57999999999986654321 134799999999999888877532 110
Q ss_pred cCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcc
Q 000174 400 FDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHA 438 (1931)
Q Consensus 400 ~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~ 438 (1931)
....+-|.|.+.++ +.......-..++||||||-.+
T Consensus 211 -~~~~~~V~T~dsfL--~~~~~~~~~~~d~liiDE~sm~ 246 (446)
T 3vkw_A 211 -VATKDNVRTVDSFL--MNYGKGARCQFKRLFIDEGLML 246 (446)
T ss_dssp -CCCTTTEEEHHHHH--HTTTSSCCCCCSEEEEETGGGS
T ss_pred -ccccceEEEeHHhh--cCCCCCCCCcCCEEEEeCcccC
Confidence 01122367887765 2222222335899999999855
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=92.76 E-value=0.41 Score=51.80 Aligned_cols=38 Identities=26% Similarity=0.232 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHhc----------cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 305 RPYQLDVLEQAKK----------KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 305 ~~~Q~eai~~~l~----------~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
.+.|.+++..+.. +.+++.+++|+|||..+-.++..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5678888887752 4589999999999988877665543
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=92.39 E-value=0.74 Score=56.19 Aligned_cols=39 Identities=31% Similarity=0.439 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHh------c--cCEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 305 RPYQLDVLEQAK------K--KNTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 305 ~~~Q~eai~~~l------~--~n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
+.-+.+.+..++ . .++++.+++|+|||..+-..+.....
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 445555554443 1 67999999999999888777665433
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=91.99 E-value=0.14 Score=58.19 Aligned_cols=24 Identities=8% Similarity=0.033 Sum_probs=19.9
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~ 341 (1931)
+++++++++|+|||..+-.++...
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999887766544
|
| >1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=91.75 E-value=0.17 Score=67.31 Aligned_cols=90 Identities=13% Similarity=0.109 Sum_probs=68.3
Q ss_pred CCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEE
Q 000174 303 QARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHY 382 (1931)
Q Consensus 303 ~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~ 382 (1931)
.+++-|++++... .++++|.+..|||||.+.+.-+.+++... .-...++|+|+.|+..+.+..+.+...++..
T Consensus 2 ~L~~~Q~~av~~~-~~~~lV~AgaGSGKT~~l~~ri~~ll~~~--~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~---- 74 (673)
T 1uaa_A 2 RLNPGQQQAVEFV-TGPCLVLAGAGSGKTRVITNKIAHLIRGC--GYQARHIAAVTFTNKAAREMKERVGQTLGRK---- 74 (673)
T ss_dssp CCCHHHHHHHHCC-SSEEEECCCTTSCHHHHHHHHHHHHHHHH--CCCGGGEEEEESSHHHHHHHHHHHHHHSCTT----
T ss_pred CCCHHHHHHHhCC-CCCEEEEeCCCCChHHHHHHHHHHHHHhc--CCCHHHeEEEeccHHHHHHHHHHHHHHcCcc----
Confidence 5899999999753 57889999999999999888887777642 1234569999999999998888888765321
Q ss_pred eCCCcccccchHHHHhhcCCccEEEEcHHHHHHHH
Q 000174 383 CGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNIL 417 (1931)
Q Consensus 383 ~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L 417 (1931)
....+-|+|...|...+
T Consensus 75 ------------------~~~~~~v~Tfhs~~~~i 91 (673)
T 1uaa_A 75 ------------------EARGLMISTFHTLGLDI 91 (673)
T ss_dssp ------------------TTTTSEEEEHHHHHHHH
T ss_pred ------------------cccCCEEEeHHHHHHHH
Confidence 01246788988887543
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=91.64 E-value=0.18 Score=55.30 Aligned_cols=36 Identities=17% Similarity=0.086 Sum_probs=27.6
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCCh
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKV 361 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~ 361 (1931)
.++.+++|+|||..++-.+.+... .+.+++++.|..
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~------~g~kV~v~k~~~ 46 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKI------AKQKIQVFKPEI 46 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEEEEC-
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH------CCCEEEEEEecc
Confidence 478999999999888877766543 356799998873
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=91.22 E-value=0.28 Score=54.44 Aligned_cols=36 Identities=17% Similarity=0.104 Sum_probs=27.8
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCCh
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKV 361 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~ 361 (1931)
.++++++|+|||..++-.+.+... .+.+++|+.|..
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~------~g~kVli~k~~~ 66 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQF------AKQHAIVFKPCI 66 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHH------TTCCEEEEECC-
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH------CCCEEEEEEecc
Confidence 358999999999988887776644 356799999875
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=90.65 E-value=0.15 Score=57.29 Aligned_cols=89 Identities=18% Similarity=0.147 Sum_probs=51.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhh
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQRE 399 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~ 399 (1931)
+++.++||+|||..++-.+.+... .+.+++++.|...= .-...+...+|+
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~------~g~kVli~~~~~d~--r~~~~i~srlG~---------------------- 64 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEY------ADVKYLVFKPKIDT--RSIRNIQSRTGT---------------------- 64 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHH------TTCCEEEEEECCCG--GGCSSCCCCCCC----------------------
T ss_pred EEEECCCCCcHHHHHHHHHHHHHh------cCCEEEEEEeccCc--hHHHHHHHhcCC----------------------
Confidence 578899999999888877766544 24568888776410 000000000110
Q ss_pred cCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 400 FDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 400 ~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
....+.+.+...++..+... +.-.++++||+||++.+..
T Consensus 65 -~~~~~~~~~~~~i~~~i~~~-~~~~~~dvViIDEaQ~l~~ 103 (223)
T 2b8t_A 65 -SLPSVEVESAPEILNYIMSN-SFNDETKVIGIDEVQFFDD 103 (223)
T ss_dssp -SSCCEEESSTHHHHHHHHST-TSCTTCCEEEECSGGGSCT
T ss_pred -CccccccCCHHHHHHHHHHH-hhCCCCCEEEEecCccCcH
Confidence 11123345556666655432 2234689999999998654
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=89.83 E-value=1.6 Score=53.93 Aligned_cols=119 Identities=17% Similarity=0.099 Sum_probs=66.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe--CChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV--PKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQ 397 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv--PT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~ 397 (1931)
+++++++|+|||..+..++..+.. .+.+++++. +.+.-+.++...+....++.+... ....
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~------~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~--~~~~--------- 162 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKK------RGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGE--PNNQ--------- 162 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHH------TTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECC--TTCS---------
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH------cCCeEEEEecCccchhHHHHHHHHHHhcCCceeec--cccC---------
Confidence 578899999999888777665533 134466555 334434444444555455543321 1111
Q ss_pred hhcCCccEEEEcHHH-HHHHHhcccccccceeEEEEeCCCccc--CCCcHHHHHHHHHhhcCCCCCcEEEEEeecC
Q 000174 398 REFDTKQVLVMTAQI-LLNILRHSIIKMEAINLLILDECHHAV--KKHPYSLVMSEFYHTTSKEKRPSVFGMTASP 470 (1931)
Q Consensus 398 ~~~~~~~IlV~Tpq~-L~d~L~~~~l~l~~i~lLV~DEaH~~~--~~~~~~~im~~~~~~~~~~~~p~iLgLTATP 470 (1931)
.|.. +.+.+.. ......++||+|++-+.. .+..+...+..+..... ...-+|.+.|+-
T Consensus 163 -----------dp~~i~~~al~~--a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~--pd~vlLVlDa~~ 223 (433)
T 3kl4_A 163 -----------NPIEIAKKGVDI--FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK--PDDVILVIDASI 223 (433)
T ss_dssp -----------CHHHHHHHHHHH--TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHC--CSEEEEEEEGGG
T ss_pred -----------CHHHHHHHHHHH--HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhC--CcceEEEEeCcc
Confidence 1211 2223332 334578999999998765 44445555555554432 235567788874
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=89.56 E-value=0.83 Score=54.56 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=20.4
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
..+++++|+|+|||..+-.++....
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHH
Confidence 4699999999999988877765543
|
| >1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* | Back alignment and structure |
|---|
Probab=89.08 E-value=0.52 Score=63.04 Aligned_cols=71 Identities=10% Similarity=0.060 Sum_probs=57.7
Q ss_pred CCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000174 302 EQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT 375 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~ 375 (1931)
..|++-|++++.. ..+.++|.+..|||||.+.+.-|.+++... .-....+|+|+.|+..+.+..+.+...+
T Consensus 10 ~~Ln~~Q~~av~~-~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~--~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRT-TEGPLLIMAGAGSGKTRVLTHRIAYLMAEK--HVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHC-CSSCEEEEECTTSCHHHHHHHHHHHHHHTT--CCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC-CCCCEEEEEcCCCCHHHHHHHHHHHHHHhc--CCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 4699999999975 348899999999999999988888777632 1234569999999999998888887764
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=88.73 E-value=2.3 Score=46.97 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=19.3
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~ 341 (1931)
.++++.+++|+|||..+-..+..+
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 369999999999998877665544
|
| >1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A | Back alignment and structure |
|---|
Probab=88.18 E-value=0.041 Score=72.23 Aligned_cols=79 Identities=14% Similarity=0.124 Sum_probs=48.4
Q ss_pred CCCeEEEEeeccCCCCCC--CC---CCCCCCCCCCccccHHHHHHhhcCccccCCCCceEEeeccccccccCCCcccccc
Q 000174 1245 SGKRFYVESIRYEMTAES--SF---PRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYCKNLLSPRFEHSE 1319 (1931)
Q Consensus 1245 ~~~~y~v~~v~~dltp~s--~f---p~~~g~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL~~~~~~~~~n~l~~~~~~~~ 1319 (1931)
|.++|.+.. ++|.+|.| .| ....|- .-.++.+||..+|++ .+.+||||..+...+ . .
T Consensus 194 n~~~Y~~~~-~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~y~~~y~i--~d~~QPllvs~~~~~-~---------~- 255 (771)
T 1u04_A 194 CFEEYTKKP-KLDHNQEIVKYWYNYHIERYW----NTPEAKLEFYRKFGQ--VDLKQPAILAKFASK-I---------K- 255 (771)
T ss_dssp CBCTTSSCB-CEECCHHHHHHHHHHHHHHHC----CSHHHHHHHHHHHCS--CCTTSCEEEEEESCC-------------
T ss_pred ccceeecCC-ccccCCCChhheeceeecCCC----CCcchhHHHHHhcCc--CcCCCCeEEecchhh-c---------c-
Confidence 556676666 66777776 44 322100 123566777799995 889999999765322 0 0
Q ss_pred ccccccccccccceEEEcCCcccccccCChH
Q 000174 1320 EQEGEGEEILDKTYYVFLPPELCFIHPLPGS 1350 (1931)
Q Consensus 1320 ~~~~~~~~~~~k~~~~~L~Pelc~v~~lp~~ 1350 (1931)
...++ .++|+||+|.+.+.+..
T Consensus 256 -------~~~~~--~i~LiPELc~~TG~~~~ 277 (771)
T 1u04_A 256 -------KNKNY--KIYLLPQLVVPTYNAEQ 277 (771)
T ss_dssp ----------CC--CEEECTTTEEEEEEGGG
T ss_pred -------CCCCc--eeeechHhhhhcCchhh
Confidence 00111 37899999999886544
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=87.66 E-value=0.39 Score=53.76 Aligned_cols=36 Identities=8% Similarity=-0.011 Sum_probs=27.8
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCCh
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKV 361 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~ 361 (1931)
.++++++|+|||..++-.+.+... .+.+++|+-|..
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~~------~g~kvli~kp~~ 57 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQI------AQYKCLVIKYAK 57 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHT------TTCCEEEEEETT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH------CCCeEEEEeecC
Confidence 478999999999888877665533 356799998865
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=87.37 E-value=1.9 Score=46.37 Aligned_cols=25 Identities=36% Similarity=0.400 Sum_probs=20.3
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
.++++++++|+|||..+-..+..+.
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHH
Confidence 5689999999999998877665543
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=86.51 E-value=1.5 Score=52.70 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=31.1
Q ss_pred CcHHHHHHHHHHhc--------cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 304 ARPYQLDVLEQAKK--------KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 304 ~~~~Q~eai~~~l~--------~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
+.|+|.+++..+.+ ...++++|.|+|||..+...+..+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 57899988877653 2279999999999999988877654
|
| >3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* | Back alignment and structure |
|---|
Probab=86.28 E-value=0.69 Score=65.64 Aligned_cols=127 Identities=9% Similarity=0.016 Sum_probs=78.8
Q ss_pred CCCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEE
Q 000174 301 EEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVG 380 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~ 380 (1931)
..++++-|.+++..- .++++|.+.-|||||.+.+.-|.+++......-...++++|++|+..+....+.+...++-...
T Consensus 8 ~~~~t~eQ~~~i~~~-~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~~~ 86 (1232)
T 3u4q_A 8 DSTWTDDQWNAIVST-GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEKELV 86 (1232)
T ss_dssp --CCCHHHHHHHHCC-SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCC-CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHHHHhh
Confidence 367999999998765 6899999999999999988877666653211113457999999999999888888775421100
Q ss_pred EEeCCCcccccchHHHHhhc-CCccEEEEcHHHHHHHHhccccccc--ceeEEEEeCCC
Q 000174 381 HYCGEMGQDFWDAQRWQREF-DTKQVLVMTAQILLNILRHSIIKME--AINLLILDECH 436 (1931)
Q Consensus 381 ~~~G~~~~~~~~~~~w~~~~-~~~~IlV~Tpq~L~d~L~~~~l~l~--~i~lLV~DEaH 436 (1931)
. ..+ ...|.+.+ .-.++-|+|...+...+-+.+.... .-++-|+||..
T Consensus 87 ----~-~~~---~~~~~~~~~~~~~~~i~T~hsf~~~~l~~~~~~~~~~~~f~~~d~~~ 137 (1232)
T 3u4q_A 87 ----Q-RPG---SLHIRRQLSLLNRASISTLHSFCLQVLKKYYYLIDLDPGFRIADQTE 137 (1232)
T ss_dssp ----H-STT---CHHHHHHHHHTTTSEEECHHHHHHHHHHHHGGGTTCCTTCEECCHHH
T ss_pred ----c-Ccc---hHHHHHHHhccCCCeEEeHHHHHHHHHHhhHHhcCCCCCCeeCCHHH
Confidence 0 000 01222221 2345678999888765544321111 11233777754
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=86.09 E-value=1.7 Score=56.06 Aligned_cols=88 Identities=9% Similarity=0.087 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEE
Q 000174 707 QSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVA 786 (1931)
Q Consensus 707 ~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVa 786 (1931)
..+.+.|.+.-.....+++||+++....+.+++. .+ ....+.+. +++ +.++++.|+...-.||+|
T Consensus 379 ~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~-------~~-~~v~~q~~----~~~---~~~~~~~~~~~~~~vl~~ 443 (551)
T 3crv_A 379 KRYADYLLKIYFQAKANVLVVFPSYEIMDRVMSR-------IS-LPKYVESE----DSS---VEDLYSAISANNKVLIGS 443 (551)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHTT-------CC-SSEEECCS----SCC---HHHHHHHTTSSSSCEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHh-------cC-CcEEEcCC----CCC---HHHHHHHHHhcCCeEEEE
Confidence 4455555443223456899999999888888751 12 22333341 233 356888896444479999
Q ss_pred e--cccccCCCCC-----CCCEEEEcCCCC
Q 000174 787 T--SVAEEGLDIR-----QCNVVIRFDLAK 809 (1931)
Q Consensus 787 T--dVaeeGlDip-----~~~lVI~fD~p~ 809 (1931)
| ....||||+| .|..||...+|.
T Consensus 444 v~gg~~~EGiD~~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 444 VGKGKLAEGIELRNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp ESSCCSCCSSCCEETTEESEEEEEEESCCC
T ss_pred EecceecccccccccCCcceeEEEEEcCCC
Confidence 9 6899999999 488999877664
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=86.05 E-value=1.6 Score=53.27 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=20.6
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
+.+++.+++|+|||..+-..+..+..
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45899999999999988777665433
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=85.96 E-value=3 Score=51.58 Aligned_cols=55 Identities=18% Similarity=0.110 Sum_probs=35.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe--CChhHHHHHHHHHHHHcCCcEE
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV--PKVPLVYQQAEVIREQTGYVVG 380 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv--PT~~Lv~Q~~~~l~~~~~l~v~ 380 (1931)
+++++++|+|||..+..++..+.. .+.+++++. |-++-+..|...+....++.+.
T Consensus 103 IlivG~~G~GKTTt~~kLA~~l~~------~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~ 159 (443)
T 3dm5_A 103 LLMVGIQGSGKTTTVAKLARYFQK------RGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVF 159 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHT------TTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEE
T ss_pred EEEECcCCCCHHHHHHHHHHHHHH------CCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEE
Confidence 678999999999888887765533 234566655 4445455555555555565543
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=85.84 E-value=3.4 Score=50.27 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=18.0
Q ss_pred CEEEEeCCCchHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~ 340 (1931)
.++|.+++|+|||..+-..+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999887665543
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=85.37 E-value=0.62 Score=55.14 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=20.5
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
.++++++|+|+|||.++-.++..+.
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999998887766543
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=84.77 E-value=1.3 Score=52.48 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=21.4
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
.++++++++|+|||..+..+.....
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999888776655
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=84.52 E-value=2.4 Score=52.84 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=20.6
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
..+++++++|+|||..+-.+...+..
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~ 156 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQ 156 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 36899999999999888776655443
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=84.35 E-value=3.5 Score=50.66 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=18.7
Q ss_pred cCEEE--EeCCCchHHHHHHHHHHHH
Q 000174 318 KNTIA--FLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 318 ~n~Il--~~~TGsGKTliall~i~~~ 341 (1931)
..++| .++.|+|||..+-..+...
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 45778 8999999998877666544
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=84.32 E-value=1.8 Score=49.89 Aligned_cols=21 Identities=43% Similarity=0.480 Sum_probs=18.2
Q ss_pred cCEEEEeCCCchHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLI 338 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i 338 (1931)
.++++.+++|+|||..+-.+.
T Consensus 30 ~~vll~G~~GtGKt~la~~i~ 50 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLH 50 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHHHH
Confidence 789999999999998776654
|
| >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* | Back alignment and structure |
|---|
Probab=83.91 E-value=0.64 Score=50.68 Aligned_cols=35 Identities=9% Similarity=0.005 Sum_probs=26.7
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK 360 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT 360 (1931)
.++++++|||||...+-.+.+.... +.+++++.|.
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~------~~kvl~~kp~ 57 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIA------QYKCLVIKYA 57 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT------TCCEEEEEET
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHc------CCeEEEEccc
Confidence 5789999999997777666665442 4668999886
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=83.71 E-value=2.6 Score=48.72 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=19.4
Q ss_pred cCEEEEeCCCchHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~ 340 (1931)
.++++++|+|+|||..+-.+...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 67999999999999988776553
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=83.65 E-value=0.77 Score=48.08 Aligned_cols=22 Identities=23% Similarity=0.290 Sum_probs=18.0
Q ss_pred cCEEEEeCCCchHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~ 339 (1931)
+.+++.+++|+|||..+-++..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6789999999999987666554
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.61 E-value=2.9 Score=49.84 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=19.2
Q ss_pred cCEEEEeCCCchHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~ 340 (1931)
+.+++++|+|+|||..+-.++.+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 56899999999999988776543
|
| >3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=83.19 E-value=1 Score=49.89 Aligned_cols=36 Identities=17% Similarity=0.043 Sum_probs=25.7
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCCh
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKV 361 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~ 361 (1931)
.++.+++|+|||...+-.+.+... .+.+++|+.|..
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~~------~g~kvli~kp~~ 66 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGIY------AKQKVVVFKPAI 66 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHH------TTCCEEEEEEC-
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH------cCCceEEEEecc
Confidence 478999999999776666554433 245689999864
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=82.91 E-value=1.9 Score=51.61 Aligned_cols=113 Identities=14% Similarity=0.138 Sum_probs=60.9
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH-HcCCcEEE-EeCCCcccccch-HHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE-QTGYVVGH-YCGEMGQDFWDA-QRW 396 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~-~~~l~v~~-~~G~~~~~~~~~-~~w 396 (1931)
+||++++|+|||..++-.+.+... .+.+|+|+...-. ..|....+.. ..++.... ..|......|.. ...
T Consensus 49 iiIaG~pG~GKTt~al~ia~~~a~------~g~~Vl~fSlEms-~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a 121 (338)
T 4a1f_A 49 VIIGARPSMGKTSLMMNMVLSALN------DDRGVAVFSLEMS-AEQLALRALSDLTSINMHDLESGRLDDDQWENLAKC 121 (338)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHH------TTCEEEEEESSSC-HHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHH------cCCeEEEEeCCCC-HHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHH
Confidence 789999999999988887776654 2467888876533 3455444432 22322111 123333222221 111
Q ss_pred HhhcCCccEEEE-----cHHHHHHHHhccccccc-ceeEEEEeCCCcccC
Q 000174 397 QREFDTKQVLVM-----TAQILLNILRHSIIKME-AINLLILDECHHAVK 440 (1931)
Q Consensus 397 ~~~~~~~~IlV~-----Tpq~L~d~L~~~~l~l~-~i~lLV~DEaH~~~~ 440 (1931)
...+....+.|. |+..|...+.+- ..-. .+++||+|-.+.+..
T Consensus 122 ~~~l~~~~l~I~d~~~~si~~i~~~ir~l-~~~~gg~~lIVIDyLqlm~~ 170 (338)
T 4a1f_A 122 FDHLSQKKLFFYDKSYVRIEQIRLQLRKL-KSQHKELGIAFIDYLQLMSG 170 (338)
T ss_dssp HHHHHHSCEEEECCTTCCHHHHHHHHHHH-HHHCTTEEEEEEEEEECCCT
T ss_pred HHHHhcCCeEEeCCCCCcHHHHHHHHHHH-HHhcCCCCEEEEechHHhcC
Confidence 111223445553 344444444331 1122 689999999988864
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=82.65 E-value=2.3 Score=49.54 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=18.4
Q ss_pred cCEEEEeCCCchHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~ 339 (1931)
.++++++|+|+|||..+-.++.
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 6799999999999988766543
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.15 E-value=3.9 Score=46.76 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=18.4
Q ss_pred cCEEEEeCCCchHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~ 339 (1931)
+++++++|+|+|||..+-.+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999988776654
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=82.08 E-value=1.6 Score=58.24 Aligned_cols=98 Identities=19% Similarity=0.223 Sum_probs=74.0
Q ss_pred CCCHHHHHHHH-HHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcC
Q 000174 701 KVTPKVQSLIK-ILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDG 779 (1931)
Q Consensus 701 ~~s~Kv~~Li~-lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G 779 (1931)
..+.|-....- ++... ..+.+++|.++++.-|..+++.+.......++++..++| +++..+|..+++..++|
T Consensus 398 TGSGKTlvall~il~~l--~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G-----~~~~~~r~~~~~~l~~g 470 (780)
T 1gm5_A 398 VGSGKTVVAQLAILDNY--EAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIG-----ATTPSEKEKIKSGLRNG 470 (780)
T ss_dssp SSSSHHHHHHHHHHHHH--HHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCS-----SSCHHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHHHH--HcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeC-----CCCHHHHHHHHHHHhcC
Confidence 45667644333 22222 135799999999999888887776532113689999999 88999999999999999
Q ss_pred CceEEEEec-ccccCCCCCCCCEEEEc
Q 000174 780 RVTLLVATS-VAEEGLDIRQCNVVIRF 805 (1931)
Q Consensus 780 ~~~vLVaTd-VaeeGlDip~~~lVI~f 805 (1931)
+.+|+|+|. .+.+.+++.++.+||.=
T Consensus 471 ~~~IvVgT~~ll~~~~~~~~l~lVVID 497 (780)
T 1gm5_A 471 QIDVVIGTHALIQEDVHFKNLGLVIID 497 (780)
T ss_dssp CCCEEEECTTHHHHCCCCSCCCEEEEE
T ss_pred CCCEEEECHHHHhhhhhccCCceEEec
Confidence 999999995 55667889999998853
|
| >2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.02 E-value=1.4 Score=41.97 Aligned_cols=71 Identities=21% Similarity=0.202 Sum_probs=44.2
Q ss_pred cchHHHHHHHHHHcCCCC-C-ccee-ecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhh
Q 000174 1852 TFTRQTLNDICLRRNWPM-P-LYRC-VREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928 (1931)
Q Consensus 1852 ~n~~~~L~e~~~~~~~~~-p-~y~~-~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~ 1928 (1931)
..|++.|+...|+---.. . .|.+ ...+|+ ++=.|++++.=. -.+.++|.| +.|-+|+++||..|++.|++
T Consensus 17 p~PKnLL~~ViqrA~~ss~~kd~l~~~~t~g~---k~K~~tl~l~WP-~~mef~a~G---~rK~eAE~kAAA~AC~kLK~ 89 (119)
T 2db2_A 17 PQPKNLLNSVIGRALGISHAKDKLVYVHTNGP---KKKKVTLHIKWP-KSVEVEGYG---SKKIDAERQAAAAACQLFKG 89 (119)
T ss_dssp SCHHHHHHHHHHHHTTHHHHHHHEEEEECCSS---SSEEEEEEECSS-SCEEEEEEE---SSHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHccCchhhheeEEeecCC---ceeEEEEEecCC-CcEEEEeec---cchHHHHHHHHHHHHHHHHH
Confidence 478999987655432111 1 1211 112333 233455555423 344779999 99999999999999999987
Q ss_pred h
Q 000174 1929 W 1929 (1931)
Q Consensus 1929 ~ 1929 (1931)
+
T Consensus 90 L 90 (119)
T 2db2_A 90 W 90 (119)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=81.28 E-value=3.4 Score=49.17 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=19.0
Q ss_pred cCEEEEeCCCchHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~ 340 (1931)
+++++++|+|+|||..+-.++.+
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999988766543
|
| >2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=80.88 E-value=1.2 Score=57.78 Aligned_cols=112 Identities=20% Similarity=0.210 Sum_probs=71.3
Q ss_pred CCcHHHHHHHHHHhc---cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcE
Q 000174 303 QARPYQLDVLEQAKK---KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVV 379 (1931)
Q Consensus 303 ~~~~~Q~eai~~~l~---~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v 379 (1931)
.+|.-|.+++..++. .-.+|.++-|.|||.+..+.+..+. ..++|.+|+..=+.. +.++.+.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~---------~~~~vtAP~~~a~~~----l~~~~~~-- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA---------GRAIVTAPAKASTDV----LAQFAGE-- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS---------SCEEEECSSCCSCHH----HHHHHGG--
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH---------hCcEEECCCHHHHHH----HHHHhhC--
Confidence 689999999999887 4468999999999977777665432 136999999765442 2222210
Q ss_pred EEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCC
Q 000174 380 GHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEK 459 (1931)
Q Consensus 380 ~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~ 459 (1931)
.|-+..|..+. . ...+.++||||||=.+-- .+++.+...
T Consensus 240 ------------------------~i~~~~Pd~~~---~----~~~~~dlliVDEAAaIp~-----pll~~ll~~----- 278 (671)
T 2zpa_A 240 ------------------------KFRFIAPDALL---A----SDEQADWLVVDEAAAIPA-----PLLHQLVSR----- 278 (671)
T ss_dssp ------------------------GCCBCCHHHHH---H----SCCCCSEEEEETGGGSCH-----HHHHHHHTT-----
T ss_pred ------------------------CeEEeCchhhh---h----CcccCCEEEEEchhcCCH-----HHHHHHHhh-----
Confidence 13334565543 1 244689999999976632 233344431
Q ss_pred CcEEEEEeecCC
Q 000174 460 RPSVFGMTASPV 471 (1931)
Q Consensus 460 ~p~iLgLTATP~ 471 (1931)
-+ ++.||.|..
T Consensus 279 ~~-~v~~~tTv~ 289 (671)
T 2zpa_A 279 FP-RTLLTTTVQ 289 (671)
T ss_dssp SS-EEEEEEEBS
T ss_pred CC-eEEEEecCC
Confidence 13 466677754
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.11 E-value=3.5 Score=50.47 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=18.6
Q ss_pred cCEEEEeCCCchHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~ 339 (1931)
+++++++++|+|||.++-.++.
T Consensus 149 ~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999988776643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1931 | ||||
| d1o0wa1 | 169 | a.149.1.1 (A:-1-167) RNase III endonuclease cataly | 2e-19 | |
| d1o0wa1 | 169 | a.149.1.1 (A:-1-167) RNase III endonuclease cataly | 0.001 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 3e-19 | |
| d2nuga1 | 148 | a.149.1.1 (A:3-150) RNase III endonuclease catalyt | 1e-18 | |
| d2nuga1 | 148 | a.149.1.1 (A:3-150) RNase III endonuclease catalyt | 3e-06 | |
| d1u61a_ | 127 | a.149.1.1 (A:) Hypothetical protein BC0111 {Bacill | 8e-15 | |
| d1u61a_ | 127 | a.149.1.1 (A:) Hypothetical protein BC0111 {Bacill | 3e-10 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 8e-14 | |
| d1a1va2 | 299 | c.37.1.14 (A:326-624) HCV helicase domain {Human h | 4e-10 | |
| d1rifa_ | 282 | c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 | 9e-10 | |
| d1yksa1 | 140 | c.37.1.14 (A:185-324) YFV helicase domain {Yellow | 2e-08 | |
| d2dmya1 | 84 | d.50.1.1 (A:8-91) Spermatid perinuclear RNA-bindin | 2e-08 | |
| d2dmya1 | 84 | d.50.1.1 (A:8-91) Spermatid perinuclear RNA-bindin | 1e-04 | |
| d1o0wa2 | 69 | d.50.1.1 (A:168-236) RNase III, C-terminal domain | 1e-07 | |
| d1o0wa2 | 69 | d.50.1.1 (A:168-236) RNase III, C-terminal domain | 3e-04 | |
| d1ekza_ | 76 | d.50.1.1 (A:) Staufen, domain III {Fruit fly (Dros | 3e-07 | |
| d1ekza_ | 76 | d.50.1.1 (A:) Staufen, domain III {Fruit fly (Dros | 1e-04 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 3e-07 | |
| d2b7ta1 | 73 | d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (R | 3e-07 | |
| d2b7ta1 | 73 | d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (R | 6e-04 | |
| d2nuga2 | 68 | d.50.1.1 (A:151-218) RNase III, C-terminal domain | 7e-07 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 7e-07 | |
| d2b7va1 | 71 | d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (R | 8e-07 | |
| d2b7va1 | 71 | d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (R | 3e-05 | |
| d1x47a1 | 85 | d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapie | 8e-07 | |
| d1x47a1 | 85 | d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapie | 0.001 | |
| d1a1va1 | 136 | c.37.1.14 (A:190-325) HCV helicase domain {Human h | 1e-06 | |
| d1di2a_ | 69 | d.50.1.1 (A:) Double-stranded RNA-binding protein | 1e-06 | |
| d1di2a_ | 69 | d.50.1.1 (A:) Double-stranded RNA-binding protein | 2e-04 | |
| d1qu6a1 | 90 | d.50.1.1 (A:1-90) dsRNA-dependent protein kinase p | 1e-06 | |
| d1qu6a1 | 90 | d.50.1.1 (A:1-90) dsRNA-dependent protein kinase p | 2e-06 | |
| d2fz4a1 | 206 | c.37.1.19 (A:24-229) DNA repair protein RAD25 {Arc | 1e-06 | |
| d1t5la2 | 181 | c.37.1.19 (A:415-595) Nucleotide excision repair e | 2e-06 | |
| d1x48a1 | 76 | d.50.1.1 (A:8-83) dsRNA-dependent protein kinase p | 4e-06 | |
| d1x48a1 | 76 | d.50.1.1 (A:8-83) dsRNA-dependent protein kinase p | 3e-04 | |
| d1si2a_ | 126 | b.34.14.1 (A:) Eukaryotic translation initiation f | 5e-06 | |
| d1qu6a2 | 89 | d.50.1.1 (A:91-179) dsRNA-dependent protein kinase | 6e-06 | |
| d2cpna1 | 76 | d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Hu | 1e-05 | |
| d2cpna1 | 76 | d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Hu | 6e-05 | |
| d1c4oa2 | 174 | c.37.1.19 (A:410-583) Nucleotide excision repair e | 2e-05 | |
| d1x49a1 | 85 | d.50.1.1 (A:8-92) dsRNA-dependent protein kinase p | 3e-05 | |
| d1x49a1 | 85 | d.50.1.1 (A:8-92) dsRNA-dependent protein kinase p | 9e-05 | |
| d1whna_ | 128 | d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, | 1e-04 | |
| d1uhza_ | 89 | d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus muscul | 1e-04 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 1e-04 | |
| d2dixa1 | 73 | d.50.1.1 (A:7-79) Interferon-inducible double stra | 3e-04 | |
| d2dixa1 | 73 | d.50.1.1 (A:7-79) Interferon-inducible double stra | 6e-04 | |
| d1whqa_ | 99 | d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 { | 3e-04 | |
| d1t4oa_ | 81 | d.50.1.1 (A:) RNase III, C-terminal domain {Baker' | 5e-04 | |
| d1uila_ | 113 | d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 { | 0.002 | |
| d1u04a1 | 322 | b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Py | 0.002 |
| >d1o0wa1 a.149.1.1 (A:-1-167) RNase III endonuclease catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: RNase III endonuclease catalytic domain species: Thermotoga maritima [TaxId: 2336]
Score = 84.9 bits (209), Expect = 2e-19
Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 32/179 (17%)
Query: 1594 ALEDALKIKFKDRGLLVEAITHAS-------RPSSGVSCYQRLEFVGDAVLDHLITKHLF 1646
+ I FK+ LL A+ H+S V ++LEF+GDAVL+ + + L+
Sbjct: 13 EFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILY 72
Query: 1647 FSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELL 1706
Y G L +++AA + E A V+ K L L G RD
Sbjct: 73 KKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDR--------- 123
Query: 1707 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTS--VVWQVFQPLLDPMVTPETL 1763
+L D E++ AI+LD G + + Q F+ ++ ++ E L
Sbjct: 124 --------------DSILADAFEALLAAIYLDQGYEKIKELFEQEFEFYIEKIMKGEML 168
|
| >d1o0wa1 a.149.1.1 (A:-1-167) RNase III endonuclease catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: RNase III endonuclease catalytic domain species: Thermotoga maritima [TaxId: 2336]
Score = 39.4 bits (91), Expect = 0.001
Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 10/107 (9%)
Query: 1373 QLKDKINYPVPASKIL-EALTAAS---------CQETFCYERAELLGDAYLKWVVSRFLF 1422
+ + + ++L AL +S ++ E+ E LGDA L+ V L+
Sbjct: 13 EFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILY 72
Query: 1423 LKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQADRFAPSRW 1469
KYP+ G L R++ S VL + L ++ +
Sbjct: 73 KKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTG 119
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 86.0 bits (211), Expect = 3e-19
Identities = 52/208 (25%), Positives = 86/208 (41%), Gaps = 17/208 (8%)
Query: 303 QARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVP 362
Q R YQ + + K+ N + L TG GKTLIA++ + + + L P P
Sbjct: 9 QPRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMM-----IAEYRLTKYGGKVLMLAPTKP 63
Query: 363 LVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSII 422
LV Q AE R G+ + + V T Q + N L I
Sbjct: 64 LVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVI--VATPQTIENDLLAGRI 121
Query: 423 KMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDC 482
+E ++L++ DE H AV + Y + E+ + K P V G+TASP + +V
Sbjct: 122 SLEDVSLIVFDEAHRAVGNYAYVFIAREYKR---QAKNPLVIGLTASPGSTPEKIMEVIN 178
Query: 483 AIKICNLESKLDSVVCTIKDRKELEKHV 510
+ I ++E + ++ ++ +V
Sbjct: 179 NLGIEHIEYR-------SENSPDVRPYV 199
|
| >d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} Length = 148 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: RNase III endonuclease catalytic domain species: Aquifex aeolicus [TaxId: 63363]
Score = 82.6 bits (203), Expect = 1e-18
Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 31/165 (18%)
Query: 1594 ALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLP 1653
LE L FKD+ LL +A+TH S S Y+ LEF+GDA+++ I L N
Sbjct: 4 QLEKKLGYTFKDKSLLEKALTHVSY--SKKEHYETLEFLGDALVNFFIVDLLVQYSPNKR 61
Query: 1654 PGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSF 1713
G L+ L+A ++ E F +A K +LH +R ++ I
Sbjct: 62 EGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETII------------------ 103
Query: 1714 GLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMV 1758
GD+ E++ A+++DSGRD + ++F L +
Sbjct: 104 -----------GDVFEALWAAVYIDSGRDANFTRELFYKLFKEDI 137
|
| >d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} Length = 148 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: RNase III endonuclease catalytic domain species: Aquifex aeolicus [TaxId: 63363]
Score = 46.8 bits (110), Expect = 3e-06
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 1373 QLKDKINYPVPASKIL-EALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEG 1431
QL+ K+ Y +L +ALT S + YE E LGDA + + + L P K EG
Sbjct: 4 QLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREG 63
Query: 1432 QLTRMRQQMVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVL 1475
L+ ++ ++S A L +I+ R + V
Sbjct: 64 FLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETIIGDVF 107
|
| >d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} Length = 127 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: Hypothetical protein BC0111 species: Bacillus cereus [TaxId: 1396]
Score = 70.8 bits (173), Expect = 8e-15
Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 14/128 (10%)
Query: 1628 RLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGS 1687
L ++GDAV + I HL + P +L L + V+ + A+V L
Sbjct: 10 ALAYMGDAVYEQYIRYHLLQ-KGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEE 68
Query: 1688 SALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDT--SV 1745
A+ R+ R+ + + E++ G L + R+ +
Sbjct: 69 EAVLRRGRNANSGTVPKNTDV-----------QTYRHSTAFEALIGYHHLLNNRERLDEI 117
Query: 1746 VWQVFQPL 1753
V++ L
Sbjct: 118 VYKAIAVL 125
|
| >d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} Length = 127 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: Hypothetical protein BC0111 species: Bacillus cereus [TaxId: 1396]
Score = 57.3 bits (138), Expect = 3e-10
Identities = 21/162 (12%), Positives = 42/162 (25%), Gaps = 47/162 (29%)
Query: 1406 ELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQADRFA 1465
+GDA + + L K + QL R+ VS + +++ + A
Sbjct: 12 AYMGDAVYEQYIRYHLLQKGKVR-PNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEA 70
Query: 1466 PSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSS 1525
R S K + Y
Sbjct: 71 VLRRG--------------------RNANSGTVPKNTDVQTYR----------------- 93
Query: 1526 SYRVLSSKTLADVVEALIGVYYVEGGKDAANHLMKWIGIQVE 1567
+ EALIG +++ ++ + ++ +E
Sbjct: 94 ---------HSTAFEALIGYHHLLNNRERLDEIVYKAIAVLE 126
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 71.9 bits (175), Expect = 8e-14
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 10/136 (7%)
Query: 704 PKVQSLIKILLK-YQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGH---N 759
PK+ L +I+ + Q ++ + I+F A K +K+ +G
Sbjct: 143 PKMDKLKEIIREQLQRKQNSKIIVFTNYRETA----KKIVNELVKDGIKAKRFVGQASKE 198
Query: 760 NSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRG 819
N + + + + + +F G +LVATSV EEGLD+ + ++V+ ++ + + IQ RG
Sbjct: 199 NDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRG 258
Query: 820 RA--RKPGSDYILMIE 833
R PG ILM +
Sbjct: 259 RTGRHMPGRVIILMAK 274
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 60.7 bits (147), Expect = 4e-10
Identities = 18/133 (13%), Positives = 37/133 (27%), Gaps = 18/133 (13%)
Query: 711 KILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRT---- 766
I L+ R +IF ++ A+L +L +A +
Sbjct: 28 AIPLEVIKGG--RHLIFCHSKKKC---DELAAKLVALGI--NAVAYYRGLDVSVIPTSGD 80
Query: 767 --FQMQETIAKFRDGRVTLLVATSVAEEG---LDIRQCNVVIRFDLAKTVLAYIQSRGRA 821
+ + G ++ + + + L + ++ Q RGR
Sbjct: 81 VVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRT 140
Query: 822 --RKPGSDYILMI 832
KPG +
Sbjct: 141 GRGKPGIYRFVAP 153
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Score = 59.5 bits (143), Expect = 9e-10
Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 20/174 (11%)
Query: 303 QARPYQLDVLEQA-KKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKV 361
+ YQ D + + + I L T AG++LI LL R +N + + +VP
Sbjct: 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYL-----ENYEGKILIIVPTT 167
Query: 362 PLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSI 421
L Q A+ + + G D + + V+V T Q ++ +
Sbjct: 168 ALTTQMADDFVDYRLFSHAMIKKIGGGASKD----DKYKNDAPVVVGTWQTVVKQPKE-- 221
Query: 422 IKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKG 475
+++ DECH A K S ++S + FG++ S + K
Sbjct: 222 -WFSQFGMMMNDECHLATGKS-ISSIISGLNNC------MFKFGLSGSLRDGKA 267
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 52.8 bits (125), Expect = 2e-08
Identities = 25/155 (16%), Positives = 49/155 (31%), Gaps = 21/155 (13%)
Query: 316 KKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT 375
K T+ GAGKT + I + C +++ + L P ++ + E
Sbjct: 6 KGMTTVLDFHPGAGKTRRFLPQILAEC-----ARRRLRTLVLAPTRVVLSEMKE------ 54
Query: 376 GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDEC 435
+ F + + M L + + ++I+DE
Sbjct: 55 ------AFHGLDVKFHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVN-WEVIIMDEA 107
Query: 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASP 470
H P S+ + ++ + MTA+P
Sbjct: 108 HFL---DPASIAARGWAAHRARANESATILMTATP 139
|
| >d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Spermatid perinuclear RNA-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.6 bits (121), Expect = 2e-08
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Query: 1867 WPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELL 1926
P Y+ + + GP HA FT +V V+ PS K AK AV +L+ +
Sbjct: 22 RPGLQYKLLSQSGPVHAPVFTMSVDVD-------GTTYEASGPSKKTAKLHVAVKVLQAM 74
Query: 1927 N 1927
Sbjct: 75 G 75
|
| >d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Spermatid perinuclear RNA-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (95), Expect = 1e-04
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 1764 PMHPVRELQERCQQQAEGLEYK-ASRSGN----LATVEVYIDGVQVGVAQNPQKKMAQKL 1818
M+ + L + GL+YK S+SG + T+ V +DG A P KK A+
Sbjct: 11 LMNALMRLNQIRP----GLQYKLLSQSGPVHAPVFTMSVDVDG-TTYEASGPSKKTAKLH 65
Query: 1819 AARNALAVLKEKETAEA 1835
A L + +A
Sbjct: 66 VAVKVLQAMGYPTGFDA 82
|
| >d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 69 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Score = 48.0 bits (114), Expect = 1e-07
Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Query: 1858 LNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDS 1917
L +I + P Y VR + F VRVN G + K+A+
Sbjct: 6 LQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIA---TGKG---RTKKEAEKE 59
Query: 1918 AAVLLLELL 1926
AA + E L
Sbjct: 60 AARIAYEKL 68
|
| >d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 69 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Score = 39.1 bits (91), Expect = 3e-04
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 1770 ELQERCQQQAEGL-EYKASRSGNLA-----TVEVYIDGVQVGVAQNPQKKMAQKLAARNA 1823
LQE Q + + EY R+ VEV ++G + + KK A+K AAR A
Sbjct: 5 ALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIA 64
Query: 1824 LAVL 1827
L
Sbjct: 65 YEKL 68
|
| >d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 76 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Staufen, domain III species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 47.7 bits (113), Expect = 3e-07
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 1858 LNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDS 1917
+++I ++RN ++ +RE GPAH K F A + GE K +K
Sbjct: 13 VHEIGIKRNMT-VHFKVLREEGPAHMKNFITAC------IVGSIVTEGEG-NGKKVSKKR 64
Query: 1918 AAVLLLELLNK 1928
AA +L L K
Sbjct: 65 AAEKMLVELQK 75
|
| >d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 76 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Staufen, domain III species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 40.0 bits (93), Expect = 1e-04
Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 1766 HPVRELQERCQQQAEGLEYKASRSGNLATVEVYIDGV----QVGVAQNPQKKMAQKLAAR 1821
P+ ++ E ++ + +K R A ++ +I V + KK+++K AA
Sbjct: 8 SPISQVHEIGIKRNMTVHFKVLREEGPAHMKNFITACIVGSIVTEGEGNGKKVSKKRAAE 67
Query: 1822 NALAVLKE 1829
L L++
Sbjct: 68 KMLVELQK 75
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 50.7 bits (120), Expect = 3e-07
Identities = 33/188 (17%), Positives = 79/188 (42%), Gaps = 12/188 (6%)
Query: 302 EQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK 360
E+ P Q + +E+ KN + + T AGKTL+A + ++ K ++++VP
Sbjct: 24 EELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEM------AMVREAIKGGKSLYVVPL 77
Query: 361 VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS 420
L ++ E ++ + D + ++V T++ +++R+
Sbjct: 78 RALAGEKYESFKKWEKIGLRIGI-----STGDYESRDEHLGDCDIIVTTSEKADSLIRNR 132
Query: 421 IIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQV 480
++A++ L++DE H + + + K V G++A+ N+ ++ +
Sbjct: 133 ASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPNVTEIAEWL 192
Query: 481 DCAIKICN 488
D + +
Sbjct: 193 DADYYVSD 200
|
| >d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 73 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-specific editase 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.2 bits (112), Expect = 3e-07
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 1868 PMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLN 1927
P Y + + GP HA F +V VN + + P+ KKAK AA L
Sbjct: 18 PGLQYMLLSQTGPVHAPLFVMSVEVN--GQVFEGSG-----PTKKKAKLHAAEKALRSFV 70
Query: 1928 KW 1929
++
Sbjct: 71 QF 72
|
| >d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 73 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-specific editase 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.9 bits (88), Expect = 6e-04
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 1763 LPMHPVRELQERCQQQAEGLEYK-ASRSGN----LATVEVYIDGVQVGVAQNPQKKMAQK 1817
LP + + +L E GL+Y S++G L + V ++G QV P KK A+
Sbjct: 5 LPKNALMQLNEIKP----GLQYMLLSQTGPVHAPLFVMSVEVNG-QVFEGSGPTKKKAKL 59
Query: 1818 LAARNALAVLKE 1829
AA AL +
Sbjct: 60 HAAEKALRSFVQ 71
|
| >d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 68 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Score = 46.1 bits (109), Expect = 7e-07
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 1858 LNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDS 1917
L +I +R P YR + GP H K+F K + G S K+A+
Sbjct: 6 LQEITQKRWKERPEYRLISVEGPHHKKKFIVEA----KIKEYRTLGEG---KSKKEAEQR 58
Query: 1918 AAVLLLELL 1926
AA L++LL
Sbjct: 59 AAEELIKLL 67
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 50.7 bits (120), Expect = 7e-07
Identities = 26/128 (20%), Positives = 40/128 (31%), Gaps = 20/128 (15%)
Query: 310 DVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAE 369
D+ KK+ TI L GAGKT + I + ++ + + L P + + E
Sbjct: 4 DIFR--KKRLTIMDLHPGAGKTKRYLPA---IVREAIKRGLR--TLILAPTRVVAAEMEE 56
Query: 370 VIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINL 429
+R V +M L I NL
Sbjct: 57 ALRGLPIRYQTPAIRAEHTGRE------------IVDLMCHATFTMRLLSPIRVPN-YNL 103
Query: 430 LILDECHH 437
+I+DE H
Sbjct: 104 IIMDEAHF 111
|
| >d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 71 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-specific editase 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.0 bits (109), Expect = 8e-07
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 12/69 (17%)
Query: 1858 LNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDS 1917
LN++ P Y + E G +HAK F +V V+ + + + K AK
Sbjct: 10 LNELR-----PGLKYDFLSESGESHAKSFVMSVVVD--GQFFEGSG-----RNKKLAKAR 57
Query: 1918 AAVLLLELL 1926
AA L +
Sbjct: 58 AAQSALATV 66
|
| >d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 71 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-specific editase 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.7 bits (98), Expect = 3e-05
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 1764 PMHPVRELQERCQQQAEGLEYK-ASRSGN----LATVEVYIDGVQVGVAQNPQKKMAQKL 1818
+PV L E GL+Y S SG + V +DG Q KK+A+
Sbjct: 3 GKNPVMILNELRP----GLKYDFLSESGESHAKSFVMSVVVDG-QFFEGSGRNKKLAKAR 57
Query: 1819 AARNALAVLKE 1829
AA++ALA +
Sbjct: 58 AAQSALATVFN 68
|
| >d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Dgcr8 protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.5 bits (110), Expect = 8e-07
Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 8/80 (10%)
Query: 1766 HPVRELQERCQQQAEGLEYKASRSGNLA----TVEVYIDGVQVGVAQNPQKKMAQKLAAR 1821
V L E Q+ + V IDGV G KK+A+ AAR
Sbjct: 10 SEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAAR 69
Query: 1822 NALAVLKEKETAEAKEKGDE 1841
L +L + ++ E
Sbjct: 70 ATLEILI----PDFVKQTSE 85
|
| >d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Dgcr8 protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (87), Expect = 0.001
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 1858 LNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDS 1917
L++ R P+Y P+ F +V ++ G S K AK+
Sbjct: 15 LHEYMQRVLKVRPVYNFFECENPSE--PFGASVTIDGVTYGSGTAS------SKKLAKNK 66
Query: 1918 AAVLLLELL 1926
AA LE+L
Sbjct: 67 AARATLEIL 75
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 47.5 bits (112), Expect = 1e-06
Identities = 23/158 (14%), Positives = 38/158 (24%), Gaps = 27/158 (17%)
Query: 315 AKKKNTIAFL--ETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR 372
+ +A L TG+GK+ + + L P V +
Sbjct: 4 VPQSFQVAHLHAPTGSGKSTKVPAAYA---------AQGYKVLVLNPSVAATLGFGAYMS 54
Query: 373 EQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLIL 432
+ G G + T + A +++I
Sbjct: 55 KAHGVDPNIRTGVRTITTG----SPITYSTYGKFLADGGCSGG----------AYDIIIC 100
Query: 433 DECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASP 470
DECH L + V TA+P
Sbjct: 101 DECHSTDATS--ILGIGTVLDQAETAGARLVVLATATP 136
|
| >d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} Length = 69 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Double-stranded RNA-binding protein A, second dsRBD species: Xenopus laevis [TaxId: 8355]
Score = 45.5 bits (107), Expect = 1e-06
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 1858 LNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDS 1917
L ++ +++ W +P Y +E GP H + FT RV T G S + AK
Sbjct: 6 LQELAVQKGWRLPEYTVAQESGPPHKREFTITCRV------ETFVETGSG-TSKQVAKRV 58
Query: 1918 AAVLLLELL 1926
AA LL
Sbjct: 59 AAEKLLTKF 67
|
| >d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} Length = 69 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Double-stranded RNA-binding protein A, second dsRBD species: Xenopus laevis [TaxId: 8355]
Score = 38.9 bits (90), Expect = 2e-04
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 1767 PVRELQERCQQQAEGL-EYKA-SRSGNLATVEVYIDGV---QVGVAQNPQKKMAQKLAAR 1821
PV LQE Q+ L EY SG E I V K++A+++AA
Sbjct: 2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSGTSKQVAKRVAAE 61
Query: 1822 NALAVLK 1828
L K
Sbjct: 62 KLLTKFK 68
|
| >d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.2 bits (109), Expect = 1e-06
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 1764 PMHPVRELQERCQQQAEGLEYKA-SRSGN----LATVEVYIDGVQVGVAQNPQKKMAQKL 1818
+ EL Q+Q L+Y+ SG T +V IDG + + KK A+
Sbjct: 12 AGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNA 71
Query: 1819 AARNALAVLKEKETAEA 1835
AA+ A+ +L +++ A +
Sbjct: 72 AAKLAVEILNKEKKAVS 88
|
| >d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.8 bits (108), Expect = 2e-06
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 1858 LNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDS 1917
LN ++ + Y+ + GP H +RFT+ V ++ + + S K+AK++
Sbjct: 19 LNTYR-QKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGR------SKKEAKNA 71
Query: 1918 AAVLLLELLNK 1928
AA L +E+LNK
Sbjct: 72 AAKLAVEILNK 82
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 48.7 bits (115), Expect = 1e-06
Identities = 33/167 (19%), Positives = 51/167 (30%), Gaps = 34/167 (20%)
Query: 305 RPYQLDVLEQA-KKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPL 363
R YQ LE+ K L TG+GKT +A + +VP + L
Sbjct: 72 RDYQEKALERWLVDKRGCIVLPTGSGKTHVA---------MAAINELSTPTLIVVPTLAL 122
Query: 364 VYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIK 423
Q E + VG + G + + +T + ++
Sbjct: 123 AEQWKERLGIFGEEYVGEFSGRIKELKP----------------LTVSTYDSAYVNAEKL 166
Query: 424 MEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASP 470
LLI DE HH + + P G+TA+
Sbjct: 167 GNRFMLLIFDEVHHLPAES--------YVQIAQMSIAPFRLGLTATF 205
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Score = 48.3 bits (114), Expect = 2e-06
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Query: 763 EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVL-----AYIQS 817
E++T + E I R G+ +LV ++ EGLDI + ++V D K + IQ+
Sbjct: 64 EIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQT 123
Query: 818 RGRARKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAIE 859
GRA + + +++M + +ET R+ AI+
Sbjct: 124 IGRAARNANGHVIMY-----ADTITKSMEIAIQETKRRRAIQ 160
|
| >d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.2 bits (104), Expect = 4e-06
Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 8/71 (11%)
Query: 1858 LNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDS 1917
+N ++ + E +RF ++ T G + ++AK
Sbjct: 5 VNSFAQKKKLS--VNYEQCEPNSELPQRFICKCKIGQTMYGTGSGV------TKQEAKQL 56
Query: 1918 AAVLLLELLNK 1928
AA + L K
Sbjct: 57 AAKEAYQKLLK 67
|
| >d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.8 bits (90), Expect = 3e-04
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 1771 LQERCQQQAEGLEYKASRSGN----LATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAV 1826
+ Q++ + Y+ + + I G K+ A++LAA+ A
Sbjct: 5 VNSFAQKKKLSVNYEQCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQK 64
Query: 1827 LKEK 1830
L +
Sbjct: 65 LLKS 68
|
| >d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: PAZ domain family: PAZ domain domain: Eukaryotic translation initiation factor 2C 1, EIF2C1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.3 bits (107), Expect = 5e-06
Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 31/116 (26%)
Query: 1235 LEGRIVTAAHSG--KRFY-VESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVEL 1291
++G V H G KR Y V ++ + +FP + G + A Y+KQKY ++L
Sbjct: 37 IKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLES-GQTVECTVAQYFKQKYNLQL 95
Query: 1292 IFKKQPLIRGRGVSYCKNLLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHPL 1347
+ P + ++ + + +LP E+C I
Sbjct: 96 KYPHLPCL---------------------------QVGQEQKHTYLPLEVCNIVAG 124
|
| >d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.4 bits (104), Expect = 6e-06
Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 1753 LLDPMVTPETLPMH-PVRELQERCQQQAEGLEYKASRSGNLA----TVEVYIDGVQVGVA 1807
LL + E L M + + Q++ + Y+ SG + + + +
Sbjct: 1 LLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQCASGVHGPEGFHYKCKMGQKEYSIG 60
Query: 1808 QNPQKKMAQKLAARNALAVLKEKETAEA 1835
K+ A++LAA+ A + +ET
Sbjct: 61 TGSTKQEAKQLAAKLAYLQILSEETGSG 88
|
| >d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: TAR RNA-binding protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (100), Expect = 1e-05
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 1858 LNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDS 1917
L ++ +++ W +P Y +E GPAH K FT R S K AK +
Sbjct: 15 LQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCR-VERFIEIGSGT------SKKLAKRN 67
Query: 1918 AAVLLLELL 1926
AA +L +
Sbjct: 68 AAAKMLLRV 76
|
| >d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: TAR RNA-binding protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (95), Expect = 6e-05
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 1758 VTPETLPMHPVRELQERCQQQAEGL-EYKASRSGNLATVEVY----IDGVQVGVAQNPQK 1812
V+P+ +PV LQE Q+ L EY ++ A + + + + K
Sbjct: 2 VSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSK 61
Query: 1813 KMAQKLAARNALAVL 1827
K+A++ AA L +
Sbjct: 62 KLAKRNAAAKMLLRV 76
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Score = 45.1 bits (106), Expect = 2e-05
Identities = 33/159 (20%), Positives = 59/159 (37%), Gaps = 20/159 (12%)
Query: 706 VQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMR 765
+ L++ + + + R ++ V V A L +++ L +
Sbjct: 17 ILDLMEGIRE-RAARGERTLVTVLTVRMAEEL----TSFLVEHGIRARYLHHE-----LD 66
Query: 766 TFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVL-----AYIQSRGR 820
F+ Q I R G LV ++ EGLDI + ++V D K + IQ+ GR
Sbjct: 67 AFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGR 126
Query: 821 ARKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAIE 859
A + + + R EET R+ A++
Sbjct: 127 AARNARGEVWLYA-----DRVSEAMQRAIEETNRRRALQ 160
|
| >d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.0 bits (98), Expect = 3e-05
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 1858 LNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDS 1917
LN Y+ + GP H +RFT+ V ++ + S ++A+++
Sbjct: 13 LNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGR------SKQEARNA 65
Query: 1918 AAVLLLELLNK 1928
AA L +++L+
Sbjct: 66 AAKLAVDILDN 76
|
| >d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.8 bits (95), Expect = 9e-05
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 1764 PMHPVRELQERCQQQAEGLEYKA-SRSGN----LATVEVYIDGVQVGVAQNPQKKMAQKL 1818
P + +L + Q + YK S SG T +V ID + A+ K+ A+
Sbjct: 6 PGFYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNA 65
Query: 1819 AARNALAVLKEKETAEA 1835
AA+ A+ +L + +
Sbjct: 66 AAKLAVDILDNENKVDC 82
|
| >d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 128 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.6 bits (97), Expect = 1e-04
Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 7/118 (5%)
Query: 1739 SGRDTSVVWQVFQPLLDPMVTPETLPMHPVRELQERCQQQAEGLEY---KASRSGNLATV 1795
SG S + ++ P+ + P L E C+++ +
Sbjct: 3 SGSSGSGIIKMAIRFDRRAYPPQ---ITPKMCLLEWCRREKLPQPVYETVQRTIDRMFCS 59
Query: 1796 EVYIDGVQVGVAQ-NPQKKMAQKLAARNALAVLKEKETAEAKEKGDENGKKRKNGTQT 1852
V + + + KK+A++ AA L E +E N +KR+ Q
Sbjct: 60 VVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGLPEGRLGEESPSLNKRKREAPDQD 117
|
| >d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: staufen homolog 2 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.6 bits (94), Expect = 1e-04
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 1766 HPVRELQERCQQQAEGL-EYKASRSGNLATVEVYIDGVQVGV----AQNPQKKMAQKLAA 1820
P+ L + Q + E +Y + ++ V+VG P KK+A+K AA
Sbjct: 7 GPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAA 66
Query: 1821 RNALAVLKEKETAEAKEKGDENG 1843
L L K + ++ G +G
Sbjct: 67 EAMLLQLGYKASTSLQDSGPSSG 89
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 43.3 bits (101), Expect = 1e-04
Identities = 26/143 (18%), Positives = 45/143 (31%), Gaps = 8/143 (5%)
Query: 302 EQARPYQLDVLEQA-KKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK 360
+ R Q ++ +K++ A TG GKT + + L K + P
Sbjct: 42 GEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMS------LFLALKGKRCYVIFPT 95
Query: 361 VPLVYQQAEVIREQTGYV-VGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH 419
LV Q AE IR+ VG +R + F L
Sbjct: 96 SLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSK 155
Query: 420 SIIKMEAINLLILDECHHAVKKH 442
++ + + +D+ +K
Sbjct: 156 HYRELGHFDFIFVDDVDAILKAS 178
|
| >d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} Length = 73 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (90), Expect = 3e-04
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Query: 1858 LNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDS 1917
L++ ++ P+Y C R H FT+ V V D T E S K AK
Sbjct: 8 LHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVG--DITCTGEG-----TSKKLAKHR 59
Query: 1918 AAVLLLELL 1926
AA + +L
Sbjct: 60 AAEAAINIL 68
|
| >d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} Length = 73 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (88), Expect = 6e-04
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Query: 1766 HPVRELQERCQQQAEGLEYK-ASRSGNLA----TVEVYIDGVQVGVAQNPQKKMAQKLAA 1820
P++ L E + Y+ + T V + + + KK+A+ AA
Sbjct: 3 TPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDI-TCTGEGTSKKLAKHRAA 61
Query: 1821 RNALAVLKEKET 1832
A+ +LK +
Sbjct: 62 EAAINILKANAS 73
|
| >d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: ATP-dependent RNA helicase A, Dhx9 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.4 bits (91), Expect = 3e-04
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 1771 LQERCQQQAEGLEYKASRSGN----LATVEVYIDGVQ-VGVAQNPQKKMAQKLAARNALA 1825
L C ++ Y+ GN EV ++G G+ + KK AQ AAR+ +
Sbjct: 12 LYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVN 71
Query: 1826 VLKEKETAEAKE 1837
L +++E
Sbjct: 72 YLVRINEVKSEE 83
|
| >d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 81 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.5 bits (89), Expect = 5e-04
Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 5/73 (6%)
Query: 1761 ETLPMHPVRELQERCQQQAEGLEYKASRSGNLA-----TVEVYIDGVQVGVAQNPQKKMA 1815
+ L M+ R+L + L Y + DG +G K+A
Sbjct: 2 DKLDMNAKRQLYSLIGYASLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIA 61
Query: 1816 QKLAARNALAVLK 1828
AA NAL K
Sbjct: 62 GIRAAENALRDKK 74
|
| >d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 113 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: ATP-dependent RNA helicase A, Dhx9 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.7 bits (87), Expect = 0.002
Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 3/92 (3%)
Query: 1837 EKGDENGKKRKNGTQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTD 1896
E+ D N N T + LN ++ Y+ + GP H + F + +
Sbjct: 11 EEVDLNAGLHGNWTLENAKARLNQYF-QKEKIQGEYK-YTQVGPDHNRSFIAEMTIYIKQ 68
Query: 1897 KGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928
G E + K A S A+ L+ L
Sbjct: 69 LG-RRIFAREHGSNKKLAAQSCALSLVRQLYH 99
|
| >d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 322 | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: PAZ domain family: PAZ domain domain: Argonaute homologue PF0537 species: Pyrococcus furiosus [TaxId: 2261]
Score = 40.2 bits (94), Expect = 0.002
Identities = 12/110 (10%), Positives = 36/110 (32%), Gaps = 27/110 (24%)
Query: 1235 LEGRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFK 1294
+ ++ K ++ + + ++ + + P + ++Y++ V+L
Sbjct: 187 TVYKPCFEEYTKKP-KLDHNQEIVKYWYNYHIERYWNTP---EAKLEFYRKFGQVDL--- 239
Query: 1295 KQPLIRGRGVSYCKNLLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFI 1344
KQP I + + + + ++L P+L
Sbjct: 240 KQPAILAK---------------FASKIKKNKNYK-----IYLLPQLVVP 269
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1931 | |||
| d2nuga1 | 148 | RNase III endonuclease catalytic domain {Aquifex a | 99.96 | |
| d1o0wa1 | 169 | RNase III endonuclease catalytic domain {Thermotog | 99.95 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.91 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.9 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.89 | |
| d2nuga1 | 148 | RNase III endonuclease catalytic domain {Aquifex a | 99.89 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 99.89 | |
| d1o0wa1 | 169 | RNase III endonuclease catalytic domain {Thermotog | 99.88 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.88 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 99.87 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.87 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 99.87 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.86 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.85 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.85 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.85 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.84 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.84 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.83 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.83 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.82 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.81 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.81 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.8 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.8 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 99.79 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.76 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.75 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.75 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.73 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.67 | |
| d1u61a_ | 127 | Hypothetical protein BC0111 {Bacillus cereus [TaxI | 99.67 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.66 | |
| d1u61a_ | 127 | Hypothetical protein BC0111 {Bacillus cereus [TaxI | 99.65 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.62 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.6 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.59 | |
| d1di2a_ | 69 | Double-stranded RNA-binding protein A, second dsRB | 99.58 | |
| d2cpna1 | 76 | TAR RNA-binding protein 2 {Human (Homo sapiens) [T | 99.55 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.54 | |
| d1ekza_ | 76 | Staufen, domain III {Fruit fly (Drosophila melanog | 99.54 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.53 | |
| d1uhza_ | 89 | staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10 | 99.53 | |
| d2nuga2 | 68 | RNase III, C-terminal domain {Aquifex aeolicus [Ta | 99.52 | |
| d2dixa1 | 73 | Interferon-inducible double stranded RNA-dependent | 99.52 | |
| d1o0wa2 | 69 | RNase III, C-terminal domain {Thermotoga maritima | 99.52 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.51 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.51 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.51 | |
| d1x49a1 | 85 | dsRNA-dependent protein kinase pkr {Mouse (Mus mus | 99.47 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.47 | |
| d1qu6a1 | 90 | dsRNA-dependent protein kinase pkr {Human (Homo sa | 99.46 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.44 | |
| d1x48a1 | 76 | dsRNA-dependent protein kinase pkr {Mouse (Mus mus | 99.44 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.42 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.4 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 99.38 | |
| d1qu6a2 | 89 | dsRNA-dependent protein kinase pkr {Human (Homo sa | 99.38 | |
| d1uila_ | 113 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus | 99.33 | |
| d1whqa_ | 99 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus | 99.31 | |
| d1x47a1 | 85 | Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | 99.29 | |
| d2b7va1 | 71 | dsRNA-specific editase 1 {Rat (Rattus norvegicus) | 99.27 | |
| d2b7ta1 | 73 | dsRNA-specific editase 1 {Rat (Rattus norvegicus) | 99.16 | |
| d2dmya1 | 84 | Spermatid perinuclear RNA-binding protein {Human ( | 99.13 | |
| d1whna_ | 128 | tRNA-dihydrouridine synthase 2-like, Dus2l (231001 | 99.11 | |
| d1t4oa_ | 81 | RNase III, C-terminal domain {Baker's yeast (Sacch | 98.97 | |
| d1x48a1 | 76 | dsRNA-dependent protein kinase pkr {Mouse (Mus mus | 98.96 | |
| d2dixa1 | 73 | Interferon-inducible double stranded RNA-dependent | 98.96 | |
| d1qu6a2 | 89 | dsRNA-dependent protein kinase pkr {Human (Homo sa | 98.94 | |
| d1x47a1 | 85 | Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | 98.94 | |
| d1o0wa2 | 69 | RNase III, C-terminal domain {Thermotoga maritima | 98.91 | |
| d2cpna1 | 76 | TAR RNA-binding protein 2 {Human (Homo sapiens) [T | 98.9 | |
| d1x49a1 | 85 | dsRNA-dependent protein kinase pkr {Mouse (Mus mus | 98.88 | |
| d1whqa_ | 99 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus | 98.87 | |
| d1qu6a1 | 90 | dsRNA-dependent protein kinase pkr {Human (Homo sa | 98.87 | |
| d1ekza_ | 76 | Staufen, domain III {Fruit fly (Drosophila melanog | 98.83 | |
| d1di2a_ | 69 | Double-stranded RNA-binding protein A, second dsRB | 98.82 | |
| d2nuga2 | 68 | RNase III, C-terminal domain {Aquifex aeolicus [Ta | 98.79 | |
| d1uila_ | 113 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus | 98.76 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 98.76 | |
| d1uhza_ | 89 | staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10 | 98.75 | |
| d1t4oa_ | 81 | RNase III, C-terminal domain {Baker's yeast (Sacch | 98.7 | |
| d1whna_ | 128 | tRNA-dihydrouridine synthase 2-like, Dus2l (231001 | 98.67 | |
| d2b7va1 | 71 | dsRNA-specific editase 1 {Rat (Rattus norvegicus) | 98.59 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 98.33 | |
| d2b7ta1 | 73 | dsRNA-specific editase 1 {Rat (Rattus norvegicus) | 98.24 | |
| d2dmya1 | 84 | Spermatid perinuclear RNA-binding protein {Human ( | 98.24 | |
| d1u04a1 | 322 | Argonaute homologue PF0537 {Pyrococcus furiosus [T | 97.88 | |
| d1si2a_ | 126 | Eukaryotic translation initiation factor 2C 1, EIF | 97.58 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 97.56 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 97.2 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 97.18 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 96.08 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 95.99 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 94.5 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 94.39 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 93.85 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 93.6 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 93.33 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 93.22 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 92.91 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 91.84 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 91.19 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 90.96 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 90.59 | |
| d1t2sa_ | 123 | Argonaute 2 {Fruit fly (Drosophila melanogaster) [ | 90.45 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 90.38 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 90.2 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 89.87 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 87.47 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 86.98 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 86.48 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 86.02 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 85.83 | |
| d1c4oa1 | 408 | Nucleotide excision repair enzyme UvrB {Thermus th | 85.68 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 83.32 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 83.13 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 83.03 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 81.81 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 80.77 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 80.66 |
| >d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: RNase III endonuclease catalytic domain species: Aquifex aeolicus [TaxId: 63363]
Probab=99.96 E-value=6e-31 Score=276.99 Aligned_cols=136 Identities=32% Similarity=0.522 Sum_probs=125.7
Q ss_pred HHHHHHHcCCCcCCHHHHHHHhcCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHHHH
Q 000174 1592 FHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFA 1671 (1931)
Q Consensus 1592 ~~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~La 1671 (1931)
++.||++|||+|+|+.||.+||||+||... .+|||||||||+||+++++.|||.+||+.++|.||.+|+.+|||.+||
T Consensus 2 l~~le~~igy~F~n~~LL~~Alth~S~~~~--~~~erLeflGDavl~~~v~~~l~~~~p~~~~g~lt~~r~~lvsn~~La 79 (148)
T d2nuga1 2 LEQLEKKLGYTFKDKSLLEKALTHVSYSKK--EHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFN 79 (148)
T ss_dssp HHHHHHHHTCCCSSHHHHHHHHBCTTTCSS--SCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHCCccCCHHHHHHHhcCcCcCCC--cchHHHHHHHHHHHhhhhHHHHHhhCCCcchHHHHHHHHHhhhhhHhh
Confidence 678999999999999999999999999643 589999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCchhhhccCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCceeEEeeec
Q 000174 1672 RVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQ 1751 (1931)
Q Consensus 1672 ~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~~~v~~~~~ 1751 (1931)
.+|.++||++||+.+.+. ..+|+++|+|||+|||||+|+|++...+++++.
T Consensus 80 ~~a~~lgl~~~i~~~~~~-----------------------------~~~kilad~~EAiiGAiylD~g~~~~~~~~~i~ 130 (148)
T d2nuga1 80 LLAQKLELHKFIRIKRGK-----------------------------INETIIGDVFEALWAAVYIDSGRDANFTRELFY 130 (148)
T ss_dssp HHHHTTTGGGTCBSCTTC-----------------------------CCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred hHHHHhhHHHHHHhcccc-----------------------------chhhhhHHHHHHHHHHhhhccCCCHHHHHHHHH
Confidence 999999999999976543 347999999999999999999999988888888
Q ss_pred cCCCCCC
Q 000174 1752 PLLDPMV 1758 (1931)
Q Consensus 1752 ~~l~~~i 1758 (1931)
+++.+.+
T Consensus 131 ~l~~~~i 137 (148)
T d2nuga1 131 KLFKEDI 137 (148)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877654
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.91 E-value=2e-24 Score=258.87 Aligned_cols=134 Identities=22% Similarity=0.192 Sum_probs=90.5
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQ 397 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~ 397 (1931)
+++||.++||||||++|+.++.+.... .+.++|||+||++|+.|++++++... ..+...... .
T Consensus 10 ~~~lv~~~TGsGKT~~~l~~~~~~~~~-----~~~~~lvi~Ptr~La~q~~~~l~~~~-~~~~~~~~~---------~-- 72 (305)
T d2bmfa2 10 RLTIMDLHPGAGKTKRYLPAIVREAIK-----RGLRTLILAPTRVVAAEMEEALRGLP-IRYQTPAIR---------A-- 72 (305)
T ss_dssp CEEEECCCTTSSTTTTHHHHHHHHHHH-----HTCCEEEEESSHHHHHHHHHHTTTSC-CBCCC----------------
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHHHh-----cCCEEEEEccHHHHHHHHHHHHhcCC-cceeeeEEe---------e--
Confidence 789999999999999988776554432 24579999999999999999987642 111111000 0
Q ss_pred hhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCC
Q 000174 398 REFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 398 ~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
.......|+++|++.|...+.. ...+.++++||+||||++... ......++.........+++++|||+..
T Consensus 73 ~~~~~~~i~~~t~~~l~~~~~~-~~~~~~~~~vViDE~H~~~~~---~~~~~~~l~~~~~~~~~~~v~~SAT~~~ 143 (305)
T d2bmfa2 73 EHTGREIVDLMCHATFTMRLLS-PIRVPNYNLIIMDEAHFTDPA---SIAARGYISTRVEMGEAAGIFMTATPPG 143 (305)
T ss_dssp ---CCCSEEEEEHHHHHHHHTS-SSCCCCCSEEEEESTTCCSHH---HHHHHHHHHHHHHHTSCEEEEECSSCTT
T ss_pred cccCccccccCCcHHHHHHHhc-CccccceeEEEeeeeeecchh---hHHHHHHHHHhhccccceEEEeecCCCc
Confidence 0114568999999999876654 345788999999999998542 2122223322222234789999999863
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=8.3e-24 Score=238.32 Aligned_cols=182 Identities=17% Similarity=0.163 Sum_probs=153.6
Q ss_pred CCCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe
Q 000174 280 GINQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV 358 (1931)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv 358 (1931)
..+|++.+..+...+++.+.|+..|+++|.+++|.+++ +|+++.++||||||++|++|+.+.+.. .....+++|++
T Consensus 16 ~~sF~~l~L~~~l~~~L~~~g~~~pt~IQ~~aIp~il~g~dvi~~a~TGSGKTlayllPil~~l~~---~~~~~~~lil~ 92 (222)
T d2j0sa1 16 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI---QVRETQALILA 92 (222)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT---TSCSCCEEEEC
T ss_pred CCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEEEcCcchhhhhhhcccccccccc---cccCceeEEec
Confidence 44677777655666899999999999999999999999 999999999999999999998876643 34456799999
Q ss_pred CChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCC
Q 000174 359 PKVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDEC 435 (1931)
Q Consensus 359 PT~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEa 435 (1931)
||++|+.|.+++++.+. ++++..+.|+..... .......+++|+|+||++|.+++.++.+.++++.++|+|||
T Consensus 93 PtreLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~----~~~~l~~~~~Ilv~TPgrl~~~~~~~~~~~~~l~~lVlDEa 168 (222)
T d2j0sa1 93 PTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGE----DIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEA 168 (222)
T ss_dssp SSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHH----HHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred chHHHHHHHHHHHHHHhCccceeEEEEeecccchh----hHHHhccCCeEEeCCCCcHHhcccccccccccceeeeecch
Confidence 99999999999998864 678888988876432 22223357899999999999999999999999999999999
Q ss_pred CcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 436 H~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
|++.+. +|...+..++...+. .+|++++|||-.
T Consensus 169 D~ll~~-~f~~~i~~I~~~l~~--~~Q~ilfSAT~~ 201 (222)
T d2j0sa1 169 DEMLNK-GFKEQIYDVYRYLPP--ATQVVLISATLP 201 (222)
T ss_dssp HHHTST-TTHHHHHHHHTTSCT--TCEEEEEESCCC
T ss_pred hHhhhc-CcHHHHHHHHHhCCC--CCEEEEEEEeCC
Confidence 999984 788888888887654 479999999954
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=2.9e-23 Score=232.35 Aligned_cols=181 Identities=16% Similarity=0.162 Sum_probs=148.7
Q ss_pred ccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCCh
Q 000174 283 QECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKV 361 (1931)
Q Consensus 283 ~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~ 361 (1931)
|++.+..+...+++.++|+.+|+|+|.++++.+++ +|+|+.++||||||++|++|+.+.+.. ...+.+++|++||+
T Consensus 3 F~dl~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvl~~A~TGsGKTla~~lp~l~~~~~---~~~~~~~lil~Ptr 79 (207)
T d1t6na_ 3 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP---VTGQVSVLVMCHTR 79 (207)
T ss_dssp STTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC---CTTCCCEEEECSCH
T ss_pred ccccCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCeEEEeccccccccccccceeeeecc---cCCCceEEEEeccc
Confidence 45555555566899999999999999999999999 999999999999999999998765432 34456799999999
Q ss_pred hHHHHHHHHHHHHc----CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCc
Q 000174 362 PLVYQQAEVIREQT----GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHH 437 (1931)
Q Consensus 362 ~Lv~Q~~~~l~~~~----~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~ 437 (1931)
+|+.|+.+.++.+. .+++..+.|+..... +........++|+|+||++|.+++..+.+.++++.++|+||||+
T Consensus 80 eL~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~ilI~TP~rl~~~~~~~~~~l~~l~~lVlDEaD~ 156 (207)
T d1t6na_ 80 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKK---DEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDK 156 (207)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHH---HHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHH
T ss_pred hhhHHHHHHHHHHHhhCCCceeEEEeccccHHH---HHHHHHhcCCCEEEeCcchhhhhccCCceeccccceeehhhhhh
Confidence 99999999998865 245777778765432 11111225789999999999999999889999999999999999
Q ss_pred ccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 438 AVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 438 ~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
+.+..+|...++.+....+. .+|++++|||-.
T Consensus 157 ll~~~~~~~~i~~I~~~~~~--~~Q~il~SAT~~ 188 (207)
T d1t6na_ 157 MLEQLDMRRDVQEIFRMTPH--EKQVMMFSATLS 188 (207)
T ss_dssp HHSSHHHHHHHHHHHHTSCS--SSEEEEEESCCC
T ss_pred hhhcCCcHHHHHHHHHhCCC--CCEEEEEeeeCC
Confidence 99865788888888877654 479999999954
|
| >d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: RNase III endonuclease catalytic domain species: Aquifex aeolicus [TaxId: 63363]
Probab=99.89 E-value=3.9e-24 Score=224.61 Aligned_cols=124 Identities=29% Similarity=0.472 Sum_probs=111.3
Q ss_pred HHHhhhcCCCCChhHHH-HHhccccCCCCCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHHHHHH
Q 000174 1372 IQLKDKINYPVPASKIL-EALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYA 1450 (1931)
Q Consensus 1372 ~~l~~~l~~~~~~~~ll-~AlT~~s~~~~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L~~~a 1450 (1931)
++|++.+||.|.+..+| +||||+|+....||||||||||++|+++++.|||.+||+.++|.||.+|+.+|||.+|+.+|
T Consensus 3 ~~le~~igy~F~n~~LL~~Alth~S~~~~~~~erLeflGDavl~~~v~~~l~~~~p~~~~g~lt~~r~~lvsn~~La~~a 82 (148)
T d2nuga1 3 EQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLA 82 (148)
T ss_dssp HHHHHHHTCCCSSHHHHHHHHBCTTTCSSSCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHCCccCCHHHHHHHhcCcCcCCCcchHHHHHHHHHHHhhhhHHHHHhhCCCcchHHHHHHHHHhhhhhHhhhHH
Confidence 57888899999887777 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccceeccccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCCCCcccc
Q 000174 1451 LSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSSYRVL 1530 (1931)
Q Consensus 1451 ~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1530 (1931)
.++||++||+..+. ..
T Consensus 83 ~~lgl~~~i~~~~~----------------------------------------------------------------~~ 98 (148)
T d2nuga1 83 QKLELHKFIRIKRG----------------------------------------------------------------KI 98 (148)
T ss_dssp HTTTGGGTCBSCTT----------------------------------------------------------------CC
T ss_pred HHhhHHHHHHhccc----------------------------------------------------------------cc
Confidence 99999999976430 12
Q ss_pred ccchhhhHHHHHhhheeeccCHH--HHHHHH
Q 000174 1531 SSKTLADVVEALIGVYYVEGGKD--AANHLM 1559 (1931)
Q Consensus 1531 ~~K~lADvvEALiGA~~l~~G~~--~a~~~~ 1559 (1931)
.+|.+||+|||+|||+|+|+|.+ .+.+++
T Consensus 99 ~~kilad~~EAiiGAiylD~g~~~~~~~~~i 129 (148)
T d2nuga1 99 NETIIGDVFEALWAAVYIDSGRDANFTRELF 129 (148)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHhhhccCCCHHHHHHHH
Confidence 46899999999999999999964 355655
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=9.6e-23 Score=227.94 Aligned_cols=181 Identities=18% Similarity=0.222 Sum_probs=150.2
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP 359 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP 359 (1931)
.+|++.+.-+...+++.++|+..|||+|+++++.+++ +|+|++++||||||++|++|+.+.+.. ...+.+++|++|
T Consensus 3 ~~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllP~l~~~~~---~~~~~~~lil~p 79 (206)
T d1veca_ 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL---KKDNIQAMVIVP 79 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT---TSCSCCEEEECS
T ss_pred CChhccCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEeeccCccccccccccchhhcccc---cccCcceEEEee
Confidence 3456666555566899999999999999999999999 999999999999999999998765543 345678999999
Q ss_pred ChhHHHHHHHHHHHHc----CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCC
Q 000174 360 KVPLVYQQAEVIREQT----GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDEC 435 (1931)
Q Consensus 360 T~~Lv~Q~~~~l~~~~----~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEa 435 (1931)
|++|+.|..+++.... +..+....|+.... .........++|+|+||++|.+++.++.+.++++.+||+|||
T Consensus 80 t~el~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~l~~~~~ivv~TPgrl~~~~~~~~~~~~~l~~lVlDEa 155 (206)
T d1veca_ 80 TRELALQVSQICIQVSKHMGGAKVMATTGGTNLR----DDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEA 155 (206)
T ss_dssp CHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHH----HHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETH
T ss_pred cchhhHHHHHHHHHHhhcccCcccccccCCccHH----HHHHHHHhccCeEEeCCccccccccchhccccccceEEEecc
Confidence 9999999999998764 35666666665432 222333468999999999999999999999999999999999
Q ss_pred CcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 436 H~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
|.+.+. +|...+..++...+.. .|++++|||..
T Consensus 156 D~ll~~-~f~~~i~~I~~~~~~~--~Q~~l~SAT~~ 188 (206)
T d1veca_ 156 DKLLSQ-DFVQIMEDIILTLPKN--RQILLYSATFP 188 (206)
T ss_dssp HHHTST-TTHHHHHHHHHHSCTT--CEEEEEESCCC
T ss_pred cccccc-chHHHHHHHHHhCCCC--CEEEEEEecCC
Confidence 999985 8888888888877653 78999999964
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.88 E-value=3.9e-22 Score=223.06 Aligned_cols=160 Identities=31% Similarity=0.432 Sum_probs=133.3
Q ss_pred CCCCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc---C
Q 000174 300 PEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT---G 376 (1931)
Q Consensus 300 ~~~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~---~ 376 (1931)
...+||+||.++++.++++|+|+++|||+|||+++++++...+.. .+.+++||+|+++|+.||++++++++ +
T Consensus 6 ~~~~pr~~Q~~~~~~~~~~n~lv~~pTGsGKT~i~~~~~~~~~~~-----~~~~il~i~P~~~L~~q~~~~~~~~~~~~~ 80 (200)
T d1wp9a1 6 DLIQPRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLTK-----YGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (200)
T ss_dssp HHHCCCHHHHHHHHHGGGSCEEEECCTTSCHHHHHHHHHHHHHHH-----SCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CCCCCCHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHHHh-----cCCcEEEEcCchHHHHHHHHHHHHhhcccc
Confidence 356899999999999999999999999999999999988776653 24579999999999999999999987 4
Q ss_pred CcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcC
Q 000174 377 YVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTS 456 (1931)
Q Consensus 377 l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~ 456 (1931)
.++..++++... ..+...+...+|+|+||+.+.+.+.+..+.+.++++||+||||++..++.+..+...+....
T Consensus 81 ~~v~~~~~~~~~-----~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~vIiDE~H~~~~~~~~~~~~~~~~~~~- 154 (200)
T d1wp9a1 81 EKIVALTGEKSP-----EERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQA- 154 (200)
T ss_dssp GGEEEECSCSCH-----HHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHC-
T ss_pred cceeeeecccch-----hHHHHhhhcccccccccchhHHHHhhhhhhccccceEEEEehhhhhcchhHHHHHHHHHhcC-
Confidence 667777776543 23333445679999999999999998888899999999999999998877777776666543
Q ss_pred CCCCcEEEEEeecCCC
Q 000174 457 KEKRPSVFGMTASPVN 472 (1931)
Q Consensus 457 ~~~~p~iLgLTATP~~ 472 (1931)
..+++++|||||..
T Consensus 155 --~~~~~l~~SATp~~ 168 (200)
T d1wp9a1 155 --KNPLVIGLTASPGS 168 (200)
T ss_dssp --SSCCEEEEESCSCS
T ss_pred --CCCcEEEEEecCCC
Confidence 34889999999964
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1.1e-22 Score=229.15 Aligned_cols=182 Identities=15% Similarity=0.145 Sum_probs=148.9
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP 359 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP 359 (1931)
.+|++.+..+...+++.+.|+..|+++|+++++.++. +|++++++||||||++|++|+.+.+.. .....++||+||
T Consensus 12 ~sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllp~l~~i~~---~~~~~~alil~P 88 (218)
T d2g9na1 12 DSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL---DLKATQALVLAP 88 (218)
T ss_dssp CCGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEEECCTTSSHHHHHHHHHHHHCCT---TCCSCCEEEECS
T ss_pred CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcccchhhhhhhhhhhhheecc---cccCccEEEEcc
Confidence 3566666555566889999999999999999999999 999999999999999999998877643 345678999999
Q ss_pred ChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCC
Q 000174 360 KVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECH 436 (1931)
Q Consensus 360 T~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH 436 (1931)
|++|+.|.+++++.+. +..+..+.++........ ......++|+|+||++|.+++.++...+.++.++|+||||
T Consensus 89 t~eL~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~IvV~TP~rl~~~l~~~~~~~~~l~~lVlDEaD 165 (218)
T d2g9na1 89 TRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQ---KLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEAD 165 (218)
T ss_dssp SHHHHHHHHHHHHHHHTTTTCCEEEECC--CCCSTTT---SSSSCCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHH
T ss_pred cchhhhhHHHHHhhhccccceeEEeeecccchhHHHH---HHhcCCCEEEEeCChhHHHHHhcCCcccccceEEEeeecc
Confidence 9999999999998864 567777776654322111 1122578999999999999999999999999999999999
Q ss_pred cccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 437 HAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 437 ~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
++.+. +|...+..++...+.. .|++++|||..
T Consensus 166 ~ll~~-~f~~~~~~Il~~~~~~--~Q~il~SAT~~ 197 (218)
T d2g9na1 166 EMLSR-GFKDQIYDIFQKLNSN--TQVVLLSATMP 197 (218)
T ss_dssp HHHHT-TCHHHHHHHHHHSCTT--CEEEEEESCCC
T ss_pred hhhcC-chHHHHHHHHHhCCCC--CeEEEEEecCC
Confidence 99985 7888888888877643 79999999964
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.87 E-value=1.9e-22 Score=226.24 Aligned_cols=178 Identities=17% Similarity=0.215 Sum_probs=146.6
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP 359 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP 359 (1931)
+|++.+..+...+++.+.|+.+|+|+|.++++.+++ .|+|+.++||+|||++|++++.+... ...+.++|||||
T Consensus 5 sf~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~~----~~~~~~~lil~p 80 (208)
T d1hv8a1 5 NFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVN----ENNGIEAIILTP 80 (208)
T ss_dssp CGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSC----SSSSCCEEEECS
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeeeechhcccccceeecccccccc----cccCcceEEEee
Confidence 455555544566889999999999999999999887 48999999999999999999876543 345678999999
Q ss_pred ChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCC
Q 000174 360 KVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECH 436 (1931)
Q Consensus 360 T~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH 436 (1931)
|++||.|+.+.++.+. +.++..++|+..... . .+.+.+++|+|+||++|.+++.++.+.+++++++|+||||
T Consensus 81 t~~l~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~----~-~~~l~~~~IlV~TP~~l~~~l~~~~~~~~~l~~lViDEad 155 (208)
T d1hv8a1 81 TRELAIQVADEIESLKGNKNLKIAKIYGGKAIYP----Q-IKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEAD 155 (208)
T ss_dssp CHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHH----H-HHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHH
T ss_pred ccccchhhhhhhhhhcccCCeEEEEeeCCCChHH----H-HHhcCCCCEEEEChHHHHHHHHcCCCCcccCcEEEEEChH
Confidence 9999999999998865 678888888765422 2 2234689999999999999999999999999999999999
Q ss_pred cccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 437 HAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 437 ~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
++.+. .+...+..++...+. ..|++++|||..
T Consensus 156 ~l~~~-~~~~~i~~I~~~~~~--~~Q~i~~SAT~~ 187 (208)
T d1hv8a1 156 EMLNM-GFIKDVEKILNACNK--DKRILLFSATMP 187 (208)
T ss_dssp HHHTT-TTHHHHHHHHHTSCS--SCEEEEECSSCC
T ss_pred HhhcC-CChHHHHHHHHhCCC--CCeEEEEEccCC
Confidence 99985 566667777776654 378999999964
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=99.87 E-value=9.6e-22 Score=224.56 Aligned_cols=187 Identities=13% Similarity=0.096 Sum_probs=153.3
Q ss_pred CCCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhh------hcCCCc
Q 000174 280 GINQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQ------RQNKKM 352 (1931)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~------~~~~~~ 352 (1931)
..+|++.+..+...+++.+.|+..|+++|.++++.+++ +|++++++||||||++|++|+.+.+.... ......
T Consensus 20 ~~~F~~l~l~~~l~~~L~~~g~~~pt~iQ~~~ip~il~g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~~~~~~ 99 (238)
T d1wrba1 20 IENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYP 99 (238)
T ss_dssp CCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCC
T ss_pred cCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHhhhhhCCCCEEEECCCCCCcceeeHHHHHHHHHhcccccccccCCCCc
Confidence 35666777666677899999999999999999999999 99999999999999999999987764321 123346
Q ss_pred EEEEEeCChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeE
Q 000174 353 LAVFLVPKVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINL 429 (1931)
Q Consensus 353 ~vL~LvPT~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~l 429 (1931)
+++||+||++|+.|+.+++..+. ++++..+.|+.... ........+++|+|+||++|.+++..+.+.+.++.+
T Consensus 100 ~alil~pt~el~~q~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~ivV~TP~~l~~~~~~~~~~l~~v~~ 175 (238)
T d1wrba1 100 KCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTH----SQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKY 175 (238)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSH----HHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCE
T ss_pred eEEEeccchhhhcchheeeeecccCCCcEEEEEeccchhh----HHHhhcccCCceeecCHHHHHhHHccCceeccccce
Confidence 79999999999999999988753 68889888876543 233445578999999999999999998889999999
Q ss_pred EEEeCCCcccCCCcHHHHHHHHHhhcC--CCCCcEEEEEeecCC
Q 000174 430 LILDECHHAVKKHPYSLVMSEFYHTTS--KEKRPSVFGMTASPV 471 (1931)
Q Consensus 430 LV~DEaH~~~~~~~~~~im~~~~~~~~--~~~~p~iLgLTATP~ 471 (1931)
+|+||||++... +|...+..++.... ....+|++++|||-.
T Consensus 176 lViDEaD~ll~~-~f~~~i~~Il~~~~~~~~~~~Q~il~SAT~~ 218 (238)
T d1wrba1 176 IVLDEADRMLDM-GFEPQIRKIIEESNMPSGINRQTLMFSATFP 218 (238)
T ss_dssp EEEETHHHHHHT-TCHHHHHHHHHSSCCCCGGGCEEEEEESSCC
T ss_pred eeeehhhhhhhh-ccHHHHHHHHHHhcCCCCCCCEEEEEeeeCC
Confidence 999999999985 77777777776432 223479999999954
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.86 E-value=9.7e-22 Score=210.29 Aligned_cols=121 Identities=20% Similarity=0.339 Sum_probs=106.3
Q ss_pred CHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCce
Q 000174 703 TPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVT 782 (1931)
Q Consensus 703 s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~ 782 (1931)
..|+..|.++|... +..++||||+++.+++.|++.|.. .++.+..+|| ++++.+|.+++++|+.|+.+
T Consensus 12 e~K~~~L~~ll~~~---~~~k~iIF~~s~~~~~~l~~~L~~----~~~~~~~~~~-----~~~~~~r~~~l~~f~~~~~~ 79 (162)
T d1fuka_ 12 EYKYECLTDLYDSI---SVTQAVIFCNTRRKVEELTTKLRN----DKFTVSAIYS-----DLPQQERDTIMKEFRSGSSR 79 (162)
T ss_dssp GGHHHHHHHHHHHT---TCSCEEEEESSHHHHHHHHHHHHH----TTCCEEEECT-----TSCHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHHhC---CCCcEEEEEEEEchHHHHHHHHhh----cCceEEEecc-----CCchhhHHHHHHHHhhcccc
Confidence 45999999999775 467899999999999999999988 6889999999 99999999999999999999
Q ss_pred EEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--EEEEEecC
Q 000174 783 LLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--YILMIERG 835 (1931)
Q Consensus 783 vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivlv~~~ 835 (1931)
||||||+++||||+|+|++||+||+|+++..|+||+||+||.|+. .+.|+..+
T Consensus 80 iLv~Tdv~~rGiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g~~i~~~~~~ 134 (162)
T d1fuka_ 80 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNE 134 (162)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETT
T ss_pred eeeccccccccccCCCceEEEEeccchhHHHHHhhccccccCCCccEEEEEcCHH
Confidence 999999999999999999999999999999999999999999987 44455433
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.85 E-value=1.3e-21 Score=219.31 Aligned_cols=181 Identities=14% Similarity=0.116 Sum_probs=146.2
Q ss_pred CCCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe
Q 000174 280 GINQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV 358 (1931)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv 358 (1931)
..+|++.+..+...+++.++|+.+|+++|.++++.++. +|++++++||||||++|++|+.+.+.. ...+.+++||+
T Consensus 9 ~~sF~~l~l~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a~~lp~i~~l~~---~~~~~~~lil~ 85 (212)
T d1qdea_ 9 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT---SVKAPQALMLA 85 (212)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT---TCCSCCEEEEC
T ss_pred ccChhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEeecccccchhhhhHhhhHhhhhc---cCCCcceEEEc
Confidence 34567776555566999999999999999999999998 999999999999999999998776643 34567899999
Q ss_pred CChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCC
Q 000174 359 PKVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDEC 435 (1931)
Q Consensus 359 PT~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEa 435 (1931)
||++|+.|....+.... ...+..+.|+..... + ....++++|+|+||++|.+++..+.+.+.+++++|+|||
T Consensus 86 pt~el~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~IvI~TP~~l~~~~~~~~~~l~~l~~lVlDEa 160 (212)
T d1qdea_ 86 PTRELALQIQKVVMALAFHMDIKVHACIGGTSFVE---D--AEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEA 160 (212)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEECC---------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred ccHHHhhhhhhhhcccccccccceeeEeeccchhH---H--HHHhcCCcEEEECCCccccccccCceecCcceEEeehhh
Confidence 99999999999998754 456666666543321 1 123468899999999999999999999999999999999
Q ss_pred CcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 436 H~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
|++.+. .|...+..++...+. ..|++++|||..
T Consensus 161 d~lld~-~f~~~v~~I~~~~~~--~~Q~vl~SAT~~ 193 (212)
T d1qdea_ 161 DEMLSS-GFKEQIYQIFTLLPP--TTQVVLLSATMP 193 (212)
T ss_dssp HHHHHT-TCHHHHHHHHHHSCT--TCEEEEEESSCC
T ss_pred hhhccc-chHHHHHHHHHhCCC--CCeEEEEEeeCC
Confidence 999984 677888888877654 378999999964
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.85 E-value=1.4e-21 Score=208.15 Aligned_cols=121 Identities=22% Similarity=0.454 Sum_probs=109.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCc
Q 000174 702 VTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRV 781 (1931)
Q Consensus 702 ~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~ 781 (1931)
...|+..|.++|.. .+.++||||+++.+|+.|++.|+. .++.+..+|| ++++.+|..++++|++|+.
T Consensus 13 ~~~K~~~L~~ll~~----~~~k~IIF~~s~~~~~~l~~~L~~----~g~~~~~~~~-----~~~~~~r~~~~~~f~~~~~ 79 (155)
T d1hv8a2 13 ENERFEALCRLLKN----KEFYGLVFCKTKRDTKELASMLRD----IGFKAGAIHG-----DLSQSQREKVIRLFKQKKI 79 (155)
T ss_dssp GGGHHHHHHHHHCS----TTCCEEEECSSHHHHHHHHHHHHH----TTCCEEEECS-----SSCHHHHHHHHHHHHTTSS
T ss_pred hHHHHHHHHHHHcc----CCCCEEEEECchHHHHHHHhhhcc----cccccccccc-----cchhhhhhhhhhhhhcccc
Confidence 35799999998853 356899999999999999999998 6889999999 9999999999999999999
Q ss_pred eEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE--EEEEecC
Q 000174 782 TLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY--ILMIERG 835 (1931)
Q Consensus 782 ~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~--ivlv~~~ 835 (1931)
+|||||+++++|||+|+|++||+||+|+|+.+|+||+||+||.|+.+ ++++.+.
T Consensus 80 ~ilv~T~~~~~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~ 135 (155)
T d1hv8a2 80 RILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRR 135 (155)
T ss_dssp SEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTT
T ss_pred eeeeehhHHhhhhhhccCcEEEEecCCCCHHHHHHHHHhcCcCCCCceEEEEEchH
Confidence 99999999999999999999999999999999999999999999874 3345443
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=2.6e-21 Score=208.02 Aligned_cols=118 Identities=24% Similarity=0.354 Sum_probs=109.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCc
Q 000174 702 VTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRV 781 (1931)
Q Consensus 702 ~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~ 781 (1931)
...|+..|.++|... ...++||||+++.+++.+++.|.. .++.+..+|| ++++.+|.+++++|++|+.
T Consensus 18 ~~~K~~~L~~ll~~~---~~~k~iiF~~~~~~~~~~~~~l~~----~~~~~~~~~~-----~~~~~~r~~~~~~fk~g~~ 85 (168)
T d2j0sa2 18 EEWKFDTLCDLYDTL---TITQAVIFCNTKRKVDWLTEKMRE----ANFTVSSMHG-----DMPQKERESIMKEFRSGAS 85 (168)
T ss_dssp TTHHHHHHHHHHHHH---TSSEEEEECSSHHHHHHHHHHHHH----TTCCCEEECT-----TSCHHHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHhC---CCCceEEEeeeHHHHHHHHHHhhh----cccchhhhhh-----hhhHHHHHHHHHHHhcCCc
Confidence 357999999999875 456999999999999999999998 5789999999 9999999999999999999
Q ss_pred eEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEEE
Q 000174 782 TLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILM 831 (1931)
Q Consensus 782 ~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ivl 831 (1931)
++||||++++||||+|+|++|||||+|+++.+|+||+||+||.|+.+.++
T Consensus 86 ~iLv~Td~~~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G~~i 135 (168)
T d2j0sa2 86 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAI 135 (168)
T ss_dssp CEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEE
T ss_pred cEEeccchhcccccccCcceEEEecCCcCHHHHHhhhccccccCCCcEEE
Confidence 99999999999999999999999999999999999999999999874443
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.84 E-value=3.3e-21 Score=208.73 Aligned_cols=117 Identities=26% Similarity=0.372 Sum_probs=109.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCc
Q 000174 702 VTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRV 781 (1931)
Q Consensus 702 ~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~ 781 (1931)
...|+..|.++|... +..++||||+++.+++.|+..|.. .++.+..+|| ++++.+|.+++++|++|+.
T Consensus 16 ~~~K~~~L~~ll~~~---~~~k~iVF~~~~~~~~~l~~~L~~----~g~~~~~~h~-----~~~~~~r~~~~~~f~~~~~ 83 (171)
T d1s2ma2 16 ERQKLHCLNTLFSKL---QINQAIIFCNSTNRVELLAKKITD----LGYSCYYSHA-----RMKQQERNKVFHEFRQGKV 83 (171)
T ss_dssp GGGHHHHHHHHHHHS---CCSEEEEECSSHHHHHHHHHHHHH----HTCCEEEECT-----TSCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHhC---CCCceEEEEeeeehhhHhHHhhhc----cccccccccc-----ccchhhhhhhhhhcccCcc
Confidence 357999999999874 467999999999999999999998 5889999999 9999999999999999999
Q ss_pred eEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEE
Q 000174 782 TLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYIL 830 (1931)
Q Consensus 782 ~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~iv 830 (1931)
++||||+++++|||+|+|++||+||+|+++.+|+||+||+||.|+.+.+
T Consensus 84 ~ilv~Td~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g~~ 132 (171)
T d1s2ma2 84 RTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLA 132 (171)
T ss_dssp SEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEE
T ss_pred ccccchhHhhhccccceeEEEEecCCcchHHHHHHHhhhcccCCCccEE
Confidence 9999999999999999999999999999999999999999999988544
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.84 E-value=6.7e-21 Score=205.95 Aligned_cols=122 Identities=25% Similarity=0.321 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEE
Q 000174 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLL 784 (1931)
Q Consensus 705 Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vL 784 (1931)
++..|+..+.+. ...+.++||||+++..++.++.+|.. .++++..+|| +|++.+|.+++++|++|+++||
T Consensus 16 qvd~ll~~i~~~-~~~~~~~iif~~~~~~~~~~~~~l~~----~g~~~~~~hg-----~~~~~eR~~~l~~Fr~g~~~vL 85 (181)
T d1t5la2 16 QIDDLIGEIRER-VERNERTLVTTLTKKMAEDLTDYLKE----AGIKVAYLHS-----EIKTLERIEIIRDLRLGKYDVL 85 (181)
T ss_dssp HHHHHHHHHHHH-HHTTCEEEEECSSHHHHHHHHHHHHT----TTCCEEEECS-----SCCHHHHHHHHHHHHHTSCSEE
T ss_pred cHHHHHHHHHHH-HhcCCeEEEEeehhhhhHHHHHHHHh----CCcceeEecC-----CccHHHHHHHHHHHHCCCCCEE
Confidence 445555555443 23467999999999999999999998 6899999999 9999999999999999999999
Q ss_pred EEecccccCCCCCCCCEEEEcCCCC-----CHHHHHHhhccCCCCCCcEEEEEecCC
Q 000174 785 VATSVAEEGLDIRQCNVVIRFDLAK-----TVLAYIQSRGRARKPGSDYILMIERGN 836 (1931)
Q Consensus 785 VaTdVaeeGlDip~~~lVI~fD~p~-----s~~~yiQr~GRa~R~Gs~~ivlv~~~~ 836 (1931)
|||++++||||+|+|++|||||+|. ++.+|+||+|||||.|..++++.....
T Consensus 86 VaTdv~~rGiDip~v~~VI~~d~p~~~~~~s~~~yi~R~GRagR~g~~~~~~~~~~~ 142 (181)
T d1t5la2 86 VGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGHVIMYADTI 142 (181)
T ss_dssp EESCCCSSSCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTCEEEEECSSC
T ss_pred EehhHHHccCCCCCCCEEEEecCCcccccccHHHHHHHHHhhccccCceeEeecchh
Confidence 9999999999999999999999995 799999999999999998877765443
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.83 E-value=1.4e-20 Score=210.83 Aligned_cols=180 Identities=18% Similarity=0.189 Sum_probs=150.6
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK 360 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT 360 (1931)
+|.+.+..+...+++.+.|+..|||+|.++++.+++ +|+|+.++||||||++|++|+.+.+.. ...+.++++++|+
T Consensus 2 sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvi~~a~tGsGKTlay~lp~i~~~~~---~~~~~~~~~~~~~ 78 (206)
T d1s2ma1 2 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP---KLNKIQALIMVPT 78 (206)
T ss_dssp CGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT---TSCSCCEEEECSS
T ss_pred ChHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEecCCcchhhhhhcccccccccc---ccccccceeeccc
Confidence 345555555566899999999999999999999999 999999999999999999998766543 3445679999999
Q ss_pred hhHHHHHHHHHHHH---cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCc
Q 000174 361 VPLVYQQAEVIREQ---TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHH 437 (1931)
Q Consensus 361 ~~Lv~Q~~~~l~~~---~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~ 437 (1931)
++++.|....+... .++++...+|+.... ..-......++|+|+||++|.+++..+.+.+.+++++|+||||+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~lV~DEaD~ 154 (206)
T d1s2ma1 79 RELALQTSQVVRTLGKHCGISCMVTTGGTNLR----DDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADK 154 (206)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECSSSCHH----HHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHH
T ss_pred hhhhhhhhhhhhhcccccCeeEEeecCccchh----hHHHHhcccceEEEECCcccccccccceeecccceEEEeechhh
Confidence 99999988887764 478899999986542 22223346899999999999999999999999999999999999
Q ss_pred ccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 438 AVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 438 ~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
+.+. +|...+..++...+.. .|++++|||..
T Consensus 155 l~~~-~f~~~v~~I~~~l~~~--~Q~il~SATl~ 185 (206)
T d1s2ma1 155 MLSR-DFKTIIEQILSFLPPT--HQSLLFSATFP 185 (206)
T ss_dssp HSSH-HHHHHHHHHHTTSCSS--CEEEEEESCCC
T ss_pred hhhh-hhHHHHHHHHHhCCCC--CEEEEEEEeCC
Confidence 9985 8999999999877643 78999999953
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=8.1e-21 Score=204.50 Aligned_cols=118 Identities=22% Similarity=0.343 Sum_probs=109.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCc
Q 000174 702 VTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRV 781 (1931)
Q Consensus 702 ~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~ 781 (1931)
.+.|...|.++|... ...|+||||+++.+++.|.+.|.. .++.+..+|| +|++.+|.+++++|++|++
T Consensus 11 ~~~K~~~L~~ll~~~---~~~k~iIF~~~~~~~~~l~~~L~~----~~~~~~~ihg-----~~~~~~r~~~l~~F~~g~~ 78 (168)
T d1t5ia_ 11 DNEKNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVE----QNFPAIAIHR-----GMPQEERLSRYQQFKDFQR 78 (168)
T ss_dssp GGGHHHHHHHHHHHS---CCSSEEEECSSHHHHHHHHHHHHH----TTCCEEEECT-----TSCHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHHhC---CCCeEEEEEeeeecchhhhhhhcc----cccccccccc-----ccchhhhhhhhhhhccccc
Confidence 367999999999875 356899999999999999999998 6889999999 9999999999999999999
Q ss_pred eEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEEE
Q 000174 782 TLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILM 831 (1931)
Q Consensus 782 ~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ivl 831 (1931)
++||||+++++|+|+|.|++||+||+|+++..|+||+|||||.|+.+.++
T Consensus 79 ~iLv~T~~~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g~~i 128 (168)
T d1t5ia_ 79 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAI 128 (168)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEE
T ss_pred eeeeccccccchhhcccchhhhhhhcccchhhHhhhhhhcccCCCccEEE
Confidence 99999999999999999999999999999999999999999998774443
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=3.7e-20 Score=204.33 Aligned_cols=116 Identities=16% Similarity=0.249 Sum_probs=108.0
Q ss_pred CHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCce
Q 000174 703 TPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVT 782 (1931)
Q Consensus 703 s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~ 782 (1931)
..|+..|+++|... .+.++||||+++..++.|+..|.. .++.+..+|| ++++.+|.+++++|++|+++
T Consensus 15 ~~k~~~L~~~l~~~---~~~~~IIF~~t~~~~~~l~~~l~~----~~~~~~~~h~-----~~~~~~r~~~~~~f~~g~~~ 82 (200)
T d1oywa3 15 FKPLDQLMRYVQEQ---RGKSGIIYCNSRAKVEDTAARLQS----KGISAAAYHA-----GLENNVRADVQEKFQRDDLQ 82 (200)
T ss_dssp SSHHHHHHHHHHHT---TTCCEEEECSSHHHHHHHHHHHHH----TTCCEEEECT-----TSCHHHHHHHHHHHHTTSCS
T ss_pred CcHHHHHHHHHHhc---CCCCEEEEEeeehhhHHhhhhhcc----CCceeEEecC-----CCcHHHHHHHHHHHhcccce
Confidence 35888999999775 457899999999999999999998 6899999999 99999999999999999999
Q ss_pred EEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEE
Q 000174 783 LLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYIL 830 (1931)
Q Consensus 783 vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~iv 830 (1931)
|||||+++++|||+|+|++||+||+|+++.+|+||+|||||.|+.+..
T Consensus 83 ilvaTd~~~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~a 130 (200)
T d1oywa3 83 IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEA 130 (200)
T ss_dssp EEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEE
T ss_pred EEEecchhhhccCCCCCCEEEECCCccchHHHHHHhhhhhcCCCCceE
Confidence 999999999999999999999999999999999999999999988433
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.81 E-value=1.2e-19 Score=192.20 Aligned_cols=120 Identities=24% Similarity=0.312 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEE
Q 000174 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLL 784 (1931)
Q Consensus 705 Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vL 784 (1931)
.+..|++.+.+. ...+.++||||.++.+|+.|++.|.. .|+++..+|| +|++.+|++++++|++|+++||
T Consensus 16 qv~dll~~i~~~-~~~g~r~lvfc~t~~~~~~l~~~L~~----~Gi~a~~~Hg-----~~~~~eR~~~l~~F~~G~~~vL 85 (174)
T d1c4oa2 16 QILDLMEGIRER-AARGERTLVTVLTVRMAEELTSFLVE----HGIRARYLHH-----ELDAFKRQALIRDLRLGHYDCL 85 (174)
T ss_dssp HHHHHHHHHHHH-HHTTCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECT-----TCCHHHHHHHHHHHHTTSCSEE
T ss_pred CHHHHHHHHHHH-HhcCCcEEEEEcchhHHHHHHHHHHh----cCCceEEEec-----ccchHHHHHHHHHHHCCCeEEE
Confidence 344455555443 23578999999999999999999999 7899999999 9999999999999999999999
Q ss_pred EEecccccCCCCCCCCEEEEcCCCC-----CHHHHHHhhccCCCCCCcEEEEEec
Q 000174 785 VATSVAEEGLDIRQCNVVIRFDLAK-----TVLAYIQSRGRARKPGSDYILMIER 834 (1931)
Q Consensus 785 VaTdVaeeGlDip~~~lVI~fD~p~-----s~~~yiQr~GRa~R~Gs~~ivlv~~ 834 (1931)
|||++++||||+|+|++||+||+|. +..+|+||+|||||.|...+++...
T Consensus 86 VaT~v~~~GiDip~V~~Vi~~~~~~~~~~~~~~~~iq~~GR~gR~~~g~~~~~~~ 140 (174)
T d1c4oa2 86 VGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYAD 140 (174)
T ss_dssp EESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTCEEEEECS
T ss_pred EeeeeeeeeccCCCCcEEEEeccccccccchhHHHHHHhhhhhhcCCCeeEEeec
Confidence 9999999999999999999999765 6789999999999998876555543
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.80 E-value=1.5e-19 Score=201.99 Aligned_cols=162 Identities=19% Similarity=0.257 Sum_probs=124.9
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH
Q 000174 294 EAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR 372 (1931)
Q Consensus 294 ~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~ 372 (1931)
..+++.|+.+|+|+|.++++.+++ +|+|+++|||+|||.+|++++...+.. .+++|+|+|+++|+.||.+.++
T Consensus 16 ~~l~~~g~~~l~~~Q~~ai~~l~~~~~~il~apTGsGKT~~a~l~i~~~~~~------~~~vl~l~P~~~L~~q~~~~~~ 89 (202)
T d2p6ra3 16 GILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK------GGKSLYVVPLRALAGEKYESFK 89 (202)
T ss_dssp HHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT------TCCEEEEESSHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCchhHHHHHHHHHHhhc------cCcceeecccHHHHHHHHHHHH
Confidence 668889999999999999999998 999999999999999998887765542 3569999999999999999999
Q ss_pred HHcC--CcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCc---HHHH
Q 000174 373 EQTG--YVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHP---YSLV 447 (1931)
Q Consensus 373 ~~~~--l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~---~~~i 447 (1931)
++.+ .++....|+..... .......|+++||+.+...+.+....+..+++||+||||++.++.. +...
T Consensus 90 ~~~~~~~~v~~~~~~~~~~~-------~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ii~DE~h~~~~~~r~~~~~~~ 162 (202)
T d2p6ra3 90 KWEKIGLRIGISTGDYESRD-------EHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEIL 162 (202)
T ss_dssp TTTTTTCCEEEECSSCBCCS-------SCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHH
T ss_pred HHhhccccceeeccCccccc-------ccccccceeeeccHHHHHHHhccchhhhhhhhccccHHHHhcccccchHHHHH
Confidence 8764 45666666543321 1235788999999999999988888889999999999999986421 2233
Q ss_pred HHHHHhhcCCCCCcEEEEEeecCC
Q 000174 448 MSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 448 m~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
+..+.... ...++++||||..
T Consensus 163 l~~i~~~~---~~~~~l~lSATl~ 183 (202)
T d2p6ra3 163 VTKMRRMN---KALRVIGLSATAP 183 (202)
T ss_dssp HHHHHHHC---TTCEEEEEECCCT
T ss_pred HHHHHhcC---CCCcEEEEcCCCC
Confidence 33333322 2478999999954
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.80 E-value=5.6e-20 Score=217.21 Aligned_cols=134 Identities=23% Similarity=0.414 Sum_probs=113.3
Q ss_pred CCCHHHHHHHHHHHHh-cCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCC---ccccHHHHHHHHHHh
Q 000174 701 KVTPKVQSLIKILLKY-QHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNS---QEMRTFQMQETIAKF 776 (1931)
Q Consensus 701 ~~s~Kv~~Li~lL~~~-~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~---~~~~~~~R~~~l~~F 776 (1931)
..++|+..|.++|.+. ....+.++||||+++.+++.+++.|.+ .++++..++|.... .++++.+|++++++|
T Consensus 140 ~~~pK~~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F 215 (286)
T d1wp9a2 140 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVK----DGIKAKRFVGQASKENDRGLSQREQKLILDEF 215 (286)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHH----TTCCEEEECCSSCC-------CCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCcEEEEeCcHHhHHHHHHHHHH----cCCceEEeeccccccccchhchHHHHHHHHHH
Confidence 4479999999998764 345678999999999999999999998 68899999996432 367788999999999
Q ss_pred hcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc-EEEEEecCChh
Q 000174 777 RDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD-YILMIERGNLS 838 (1931)
Q Consensus 777 r~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~-~ivlv~~~~~~ 838 (1931)
++|+++|||||+|+++|||+|+|++||+||+|||+..|+||+|||||.++. +++|+..+..+
T Consensus 216 ~~g~~~vLv~T~~~~~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR~~~~~~~~l~~~~~~e 278 (286)
T d1wp9a2 216 ARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIILMAKGTRD 278 (286)
T ss_dssp HHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCCSEEEEEEETTSHH
T ss_pred HcCCCcEEEEccceeccccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCCCCEEEEEEeCCCHH
Confidence 999999999999999999999999999999999999999999999998766 44455555433
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.79 E-value=2.1e-19 Score=201.95 Aligned_cols=179 Identities=15% Similarity=0.116 Sum_probs=142.8
Q ss_pred ccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCCh
Q 000174 283 QECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKV 361 (1931)
Q Consensus 283 ~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~ 361 (1931)
|++.+.-+...+++++.|+.+|+++|.++++.+++ +|+|++++||||||++|++|+.+.+.. ......+++++|+.
T Consensus 3 F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvii~a~TGSGKTlayllp~l~~~~~---~~~~~~~~~~~~~~ 79 (209)
T d1q0ua_ 3 FTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP---ERAEVQAVITAPTR 79 (209)
T ss_dssp GGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT---TSCSCCEEEECSSH
T ss_pred cccCCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEeecccccccceeeeeeecccccc---cccccccccccccc
Confidence 44555555566889999999999999999999998 999999999999999999998876543 34456789999999
Q ss_pred hHHHHHHHHHHHHc-------CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeC
Q 000174 362 PLVYQQAEVIREQT-------GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDE 434 (1931)
Q Consensus 362 ~Lv~Q~~~~l~~~~-------~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DE 434 (1931)
+++.|.+..+.... ...+..+.|..... ..-.....+++|+|+||+++.+++.+....+.++.++|+||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Ilv~TP~~l~~~~~~~~~~~~~l~~lViDE 155 (209)
T d1q0ua_ 80 ELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQ----KALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDE 155 (209)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHH----HTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECS
T ss_pred chhHHHHHHHHhhhccccccccccccccccchhhH----HHHHHhccCceEEEecCchhhhhhhhhccccccceEEEEee
Confidence 99999888777643 24455555543321 11112235799999999999999999888999999999999
Q ss_pred CCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 435 CHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 435 aH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
||++.+. +|...+..+....++ ..|++++|||..
T Consensus 156 ad~ll~~-~f~~~v~~I~~~~~~--~~Q~il~SATl~ 189 (209)
T d1q0ua_ 156 ADLMLDM-GFITDVDQIAARMPK--DLQMLVFSATIP 189 (209)
T ss_dssp HHHHHHT-TCHHHHHHHHHTSCT--TCEEEEEESCCC
T ss_pred ccccccc-ccHHHHHHHHHHCCC--CCEEEEEEccCC
Confidence 9999985 688888888877654 379999999953
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.76 E-value=5.5e-19 Score=202.61 Aligned_cols=166 Identities=18% Similarity=0.211 Sum_probs=118.5
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH
Q 000174 294 EAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR 372 (1931)
Q Consensus 294 ~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~ 372 (1931)
+.+-+.++.+|+++|+++++.+++ +|+++.+|||+|||+++++++...+. +++++|||+||++|+.||+++++
T Consensus 34 ~~~~~~~~~~p~~~Q~~~i~~~l~g~~~~i~apTGsGKT~~~~~~~~~~~~------~~~rvliv~Pt~~La~Q~~~~l~ 107 (237)
T d1gkub1 34 VEFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLAL------KGKRCYVIFPTSLLVIQAAETIR 107 (237)
T ss_dssp HHHHHTTTCSCCHHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHHT------TSCCEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHHHHCCCCEEEEecCCChHHHHHHHHHHHHHH------hcCeEEEEeccHHHHHHHHHHHH
Confidence 444555778999999999999999 89999999999999999998876654 34679999999999999999999
Q ss_pred HHc---CCcE----EEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcH-
Q 000174 373 EQT---GYVV----GHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPY- 444 (1931)
Q Consensus 373 ~~~---~l~v----~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~- 444 (1931)
+++ ++.+ ..+.+.. .......+......++|+|+||++|.+. ...+.++++|||||||++.+.+.-
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~Ilv~Tp~~l~~~----~~~~~~~~~vVvDE~d~~l~~~~~~ 181 (237)
T d1gkub1 108 KYAEKAGVGTENLIGYYHGRI--PKREKENFMQNLRNFKIVITTTQFLSKH----YRELGHFDFIFVDDVDAILKASKNV 181 (237)
T ss_dssp HHHTTTCCSGGGSEEECCSSC--CSHHHHHHHHSGGGCSEEEEEHHHHHHC----STTSCCCSEEEESCHHHHHTSTHHH
T ss_pred HHHHHcCCceEEEEeeeeccc--chhhhhhhhccccccceeccChHHHHHh----hhhcCCCCEEEEEChhhhhhcccch
Confidence 864 3332 3333332 2222333444446789999999988753 345678999999999999874321
Q ss_pred HHHHHHHHh--------hcCCCCCcEEEEEeecCCC
Q 000174 445 SLVMSEFYH--------TTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 445 ~~im~~~~~--------~~~~~~~p~iLgLTATP~~ 472 (1931)
...+. ... .......++++++|||+.+
T Consensus 182 ~~~~~-~~g~~~~~~~~~~~~~~~~~~i~~SAT~~~ 216 (237)
T d1gkub1 182 DKLLH-LLGFHYDLKTKSWVGEARGCLMVSTATAKK 216 (237)
T ss_dssp HHHHH-HTTEEEETTTTEEEECCSSEEEECCCCSCC
T ss_pred hHHHH-hcCChHHHHHHHhhCCCCCeEEEEeCCCCc
Confidence 11211 110 0111234779999999754
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.75 E-value=1.7e-18 Score=193.45 Aligned_cols=137 Identities=28% Similarity=0.310 Sum_probs=109.3
Q ss_pred CCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcE
Q 000174 301 EEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVV 379 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v 379 (1931)
..+||+||++++..+++ ++.|++++||+|||++++..+.++ +.++|||||+++|+.||.++++.+....+
T Consensus 68 ~~~Lr~yQ~eav~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---------~~~~Liv~p~~~L~~q~~~~~~~~~~~~~ 138 (206)
T d2fz4a1 68 EISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---------STPTLIVVPTLALAEQWKERLGIFGEEYV 138 (206)
T ss_dssp CCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS---------CSCEEEEESSHHHHHHHHHHHGGGCGGGE
T ss_pred CCCcCHHHHHHHHHHHhCCCcEEEeCCCCCceehHHhHHHHh---------cCceeEEEcccchHHHHHHHHHhhcccch
Confidence 35799999999999998 778999999999999988776432 34699999999999999999998776677
Q ss_pred EEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCC
Q 000174 380 GHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEK 459 (1931)
Q Consensus 380 ~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~ 459 (1931)
..+.|... ....|+|+|++.+...... ...++++||+|||||+..+ .|..+++.+ .
T Consensus 139 ~~~~~~~~-------------~~~~i~i~t~~~~~~~~~~---~~~~~~lvIiDEaH~~~a~-~~~~i~~~~-------~ 194 (206)
T d2fz4a1 139 GEFSGRIK-------------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAE-SYVQIAQMS-------I 194 (206)
T ss_dssp EEESSSCB-------------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTT-THHHHHHTC-------C
T ss_pred hhcccccc-------------cccccccceehhhhhhhHh---hCCcCCEEEEECCeeCCcH-HHHHHHhcc-------C
Confidence 77766532 3457999999998865443 2467999999999999764 566665421 2
Q ss_pred CcEEEEEeecC
Q 000174 460 RPSVFGMTASP 470 (1931)
Q Consensus 460 ~p~iLgLTATP 470 (1931)
.+++||||||+
T Consensus 195 ~~~~lgLTATl 205 (206)
T d2fz4a1 195 APFRLGLTATF 205 (206)
T ss_dssp CSEEEEEEESC
T ss_pred CCcEEEEecCC
Confidence 36789999997
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.75 E-value=6.9e-19 Score=205.56 Aligned_cols=152 Identities=24% Similarity=0.257 Sum_probs=112.6
Q ss_pred CCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcC---
Q 000174 301 EEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG--- 376 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~--- 376 (1931)
..+||+||.+++..+++ ++.|+.+|||+|||+++.+++..+... ...++|||||+++|+.||++++.++..
T Consensus 111 ~~~~rdyQ~~av~~~l~~~~~il~~pTGsGKT~i~~~i~~~~~~~-----~~~k~Liivp~~~Lv~Q~~~~f~~~~~~~~ 185 (282)
T d1rifa_ 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-----YEGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp ECCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH-----CSSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred ccccchHHHHHHHHHHhcCCceeEEEcccCccHHHHHHHHHhhhc-----ccceEEEEEcCchhHHHHHHHHHHhhcccc
Confidence 36899999999999998 889999999999999998887766553 346799999999999999999998753
Q ss_pred CcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcC
Q 000174 377 YVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTS 456 (1931)
Q Consensus 377 l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~ 456 (1931)
..+..+.++..... .......|+|+|+|.+.+... ..++++++||+|||||+..+ .+..++.. .
T Consensus 186 ~~~~~~~~g~~~~~-------~~~~~~~i~i~t~qs~~~~~~---~~~~~f~~VIvDEaH~~~a~-~~~~il~~----~- 249 (282)
T d1rifa_ 186 AMIKKIGGGASKDD-------KYKNDAPVVVGTWQTVVKQPK---EWFSQFGMMMNDECHLATGK-SISSIISG----L- 249 (282)
T ss_dssp GGEEECSTTCSSTT-------CCCTTCSEEEECHHHHTTSCG---GGGGGEEEEEEETGGGCCHH-HHHHHTTT----C-
T ss_pred ccceeecceecccc-------cccccceEEEEeeehhhhhcc---cccCCCCEEEEECCCCCCch-hHHHHHHh----c-
Confidence 23455555433211 112467899999999864322 34678999999999999763 44444322 1
Q ss_pred CCCCcEEEEEeecCCCCC
Q 000174 457 KEKRPSVFGMTASPVNLK 474 (1931)
Q Consensus 457 ~~~~p~iLgLTATP~~~~ 474 (1931)
...+.++||||||...+
T Consensus 250 -~~~~~rlGlTaT~~~~~ 266 (282)
T d1rifa_ 250 -NNCMFKFGLSGSLRDGK 266 (282)
T ss_dssp -TTCCEEEEECSSCCTTS
T ss_pred -cCCCeEEEEEeecCCCC
Confidence 12356799999997533
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=3e-18 Score=191.99 Aligned_cols=165 Identities=14% Similarity=0.127 Sum_probs=117.8
Q ss_pred hhhhcC-CCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHH
Q 000174 294 EAKEKM-PEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVI 371 (1931)
Q Consensus 294 ~~l~~~-~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l 371 (1931)
+.++.. |+.++||||.++++.+++ +|+|+++|||||||++|.+++.. ...++++++|+++|+.|+.+.+
T Consensus 15 ~~l~~~fg~~~~rp~Q~~ai~~~l~g~~vlv~apTGsGKT~~~~~~~~~---------~~~~~~~v~P~~~L~~q~~~~l 85 (206)
T d1oywa2 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL---------LNGLTVVVSPLISLMKDQVDQL 85 (206)
T ss_dssp HHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH---------SSSEEEEECSCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCCCcchhhhhhhh---------ccCceEEeccchhhhhhHHHHH
Confidence 445544 899999999999999998 89999999999999999998753 2467999999999999999999
Q ss_pred HHHcCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCC-cHHHH---
Q 000174 372 REQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKH-PYSLV--- 447 (1931)
Q Consensus 372 ~~~~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~-~~~~i--- 447 (1931)
+... .......+...................+|+++||+.+.............+++||+||||++.... .+...
T Consensus 86 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~~~~~~~~v~~lviDEaH~~~~~~~~~~~~~~~ 164 (206)
T d1oywa2 86 QANG-VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAA 164 (206)
T ss_dssp HHTT-CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHG
T ss_pred Hhhc-ccccccccccccccchhHHHHHhcCCceEEEEechhhhchhhcccchhheeeeeeeeeeeeeeccccchHHHHHH
Confidence 8764 333444333322221111122233578899999999876555555677889999999999887531 11111
Q ss_pred HHHHHhhcCCCCCcEEEEEeecCC
Q 000174 448 MSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 448 m~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
+..+.... ...++++||||+.
T Consensus 165 ~~~l~~~~---~~~~ii~lSATl~ 185 (206)
T d1oywa2 165 LGQLRQRF---PTLPFMALTATAD 185 (206)
T ss_dssp GGGHHHHC---TTSCEEEEESCCC
T ss_pred HHHHHHhC---CCCceEEEEeCCC
Confidence 11222222 2367999999975
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=3.9e-16 Score=173.85 Aligned_cols=158 Identities=18% Similarity=0.147 Sum_probs=126.9
Q ss_pred hhhcCCCCCCcHHHHHHHHHHhc-------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHH
Q 000174 295 AKEKMPEEQARPYQLDVLEQAKK-------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQ 367 (1931)
Q Consensus 295 ~l~~~~~~~~~~~Q~eai~~~l~-------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~ 367 (1931)
.+...-.+.+++-|..++..+.+ .+.+++++||||||.+|+..+...+. .+..+++||||..|+.|+
T Consensus 47 ~~~~~lP~~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~------~g~qv~~l~Pt~~La~Q~ 120 (233)
T d2eyqa3 47 LFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD------NHKQVAVLVPTTLLAQQH 120 (233)
T ss_dssp HHHHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT------TTCEEEEECSSHHHHHHH
T ss_pred hhhhccccccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHH------cCCceEEEccHHHhHHHH
Confidence 33444567899999999998865 35799999999999999999988776 367899999999999999
Q ss_pred HHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcC-CccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCc
Q 000174 368 AEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFD-TKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHP 443 (1931)
Q Consensus 368 ~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~-~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~ 443 (1931)
++.+++++ +..+.+++|...... +...|..+.. ..+|||+|...+. ..+.+.+++|||+||.|+. +
T Consensus 121 ~~~~~~~~~~~~~~v~~l~~~~~~~~-~~~~~~~~~~g~~~iviGths~l~-----~~~~f~~LgLiIiDEeH~f----g 190 (233)
T d2eyqa3 121 YDNFRDRFANWPVRIEMISRFRSAKE-QTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHRF----G 190 (233)
T ss_dssp HHHHHHHSTTTTCCEEEESTTSCHHH-HHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGGS----C
T ss_pred HHHHHHHHhhCCCEEEeccCcccchh-HHHHHHHHhCCCCCEEEeehhhhc-----cCCccccccceeeechhhh----h
Confidence 99999965 678999999876543 4566777765 5799999999887 5678899999999999987 5
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEeecCCC
Q 000174 444 YSLVMSEFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 444 ~~~im~~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
|.+...-.... ..+.+|.+||||+.
T Consensus 191 ~kQ~~~l~~~~----~~~~~l~~SATPip 215 (233)
T d2eyqa3 191 VRHKERIKAMR----ANVDILTLTATPIP 215 (233)
T ss_dssp HHHHHHHHHHH----TTSEEEEEESSCCC
T ss_pred hHHHHHHHhhC----CCCCEEEEecchhH
Confidence 65553322221 23789999999984
|
| >d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: Hypothetical protein BC0111 species: Bacillus cereus [TaxId: 1396]
Probab=99.67 E-value=1.5e-17 Score=167.58 Aligned_cols=115 Identities=18% Similarity=0.158 Sum_probs=84.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHHHHHHHHHcCchhhhccCCchhHHHHHHHHHHHHH
Q 000174 1624 SCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLE 1703 (1931)
Q Consensus 1624 ~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~La~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~ 1703 (1931)
-+...|||||||||+++|+.|||.++| .+||.||++|+++|||++||.++.++||++||.........
T Consensus 6 ~~~~~LefLGDAVl~l~v~~~L~~~~p-~~eg~Lt~~r~~lV~~~~la~~a~~l~l~~~l~~~e~~~~~----------- 73 (127)
T d1u61a_ 6 LNSLALAYMGDAVYEQYIRYHLLQKGK-VRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLR----------- 73 (127)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHCC-SCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHH-----------
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHhCC-CCccHHHHHHHHHccHHHHHHHHHHhCcHHHhhhccccccc-----------
Confidence 367899999999999999999999999 78999999999999999999999999999999643222111
Q ss_pred hhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCceeEEeeecc
Q 000174 1704 ELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQP 1752 (1931)
Q Consensus 1704 ~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~~~v~~~~~~ 1752 (1931)
.-++.............++.+||+|||+|||||+|+|++ +++.++.+
T Consensus 74 ~Grn~~~~~~~k~~~~~~y~lad~fEAliGalYLd~~~e--~~~~~i~~ 120 (127)
T d1u61a_ 74 RGRNANSGTVPKNTDVQTYRHSTAFEALIGYHHLLNNRE--RLDEIVYK 120 (127)
T ss_dssp HHTCCCSSCCCTTCCHHHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHH
T ss_pred cCCcccCCCCCcccchhHHHhhhHHHHHHHHHHHcCCHH--HHHHHHHH
Confidence 001111000000011123479999999999999999865 44444433
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.66 E-value=1.9e-16 Score=179.77 Aligned_cols=153 Identities=19% Similarity=0.175 Sum_probs=122.2
Q ss_pred CCCCCcHHHHHHHHHHhc-------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH
Q 000174 300 PEEQARPYQLDVLEQAKK-------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR 372 (1931)
Q Consensus 300 ~~~~~~~~Q~eai~~~l~-------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~ 372 (1931)
-.+++|+-|++++..+.+ .+.+++++||||||.+|+..+...+.. +.+++|+|||..|+.|+++.++
T Consensus 80 LPFeLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~------g~q~~~m~Pt~~La~Qh~~~~~ 153 (264)
T d1gm5a3 80 LPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA------GFQTAFMVPTSILAIQHYRRTV 153 (264)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH------TSCEEEECSCHHHHHHHHHHHH
T ss_pred ccccCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhc------ccceeEEeehHhhhHHHHHHHH
Confidence 346899999999999864 367999999999999999999887764 5679999999999999999999
Q ss_pred HHc---CCcEEEEeCCCcccccchHHHHhhcC-CccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHH
Q 000174 373 EQT---GYVVGHYCGEMGQDFWDAQRWQREFD-TKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVM 448 (1931)
Q Consensus 373 ~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~-~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im 448 (1931)
+++ ++.+.+++|+.... .+...|..+.. ..+|+|+|...+. ..+.+.+++|||+||-|+..- .+..
T Consensus 154 ~~f~~~~~~v~~l~~~~~~~-~r~~~~~~~~~g~~~iiIGThsl~~-----~~~~f~~LglviiDEqH~fgv----~Qr~ 223 (264)
T d1gm5a3 154 ESFSKFNIHVALLIGATTPS-EKEKIKSGLRNGQIDVVIGTHALIQ-----EDVHFKNLGLVIIDEQHRFGV----KQRE 223 (264)
T ss_dssp HHHTCSSCCEEECCSSSCHH-HHHHHHHHHHSSCCCEEEECTTHHH-----HCCCCSCCCEEEEESCCCC---------C
T ss_pred HhhhhccccceeeccccchH-HHHHHHHHHHCCCCCEEEeehHHhc-----CCCCccccceeeeccccccch----hhHH
Confidence 988 68999999987654 35667877654 7899999998887 346678999999999999853 2221
Q ss_pred HHHHhhcCCCCCcEEEEEeecCCC
Q 000174 449 SEFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 449 ~~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
........+.+|.|||||+.
T Consensus 224 ----~l~~~~~~~~~l~~SATPip 243 (264)
T d1gm5a3 224 ----ALMNKGKMVDTLVMSATPIP 243 (264)
T ss_dssp ----CCCSSSSCCCEEEEESSCCC
T ss_pred ----HHHHhCcCCCEEEEECCCCH
Confidence 11122345889999999984
|
| >d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: Hypothetical protein BC0111 species: Bacillus cereus [TaxId: 1396]
Probab=99.65 E-value=1.7e-17 Score=167.17 Aligned_cols=117 Identities=15% Similarity=0.138 Sum_probs=90.4
Q ss_pred CCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHHHHHHHHcCCccceeccccCCCCccCCCCCCcc
Q 000174 1399 TFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVF 1478 (1931)
Q Consensus 1399 ~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L~~~a~~~gL~~~i~~~~f~~~~w~pp~~~~~~ 1478 (1931)
..|...|||||||||+++++.|||.++| .+||.||.+|+.+|||.+|+++|.++||+.||.....+.-+|--..
T Consensus 5 ~~~~~~LefLGDAVl~l~v~~~L~~~~p-~~eg~Lt~~r~~lV~~~~la~~a~~l~l~~~l~~~e~~~~~~Grn~----- 78 (127)
T d1u61a_ 5 QLNSLALAYMGDAVYEQYIRYHLLQKGK-VRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRGRNA----- 78 (127)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHCC-SCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHHHTCC-----
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHhCC-CCccHHHHHHHHHccHHHHHHHHHHhCcHHHhhhccccccccCCcc-----
Confidence 4678899999999999999999999999 6799999999999999999999999999999975432111110000
Q ss_pred cCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCCCCccccccchhhhHHHHHhhheeeccCHHHHHHH
Q 000174 1479 DEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSSYRVLSSKTLADVVEALIGVYYVEGGKDAANHL 1558 (1931)
Q Consensus 1479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADvvEALiGA~~l~~G~~~a~~~ 1558 (1931)
. . ...........+.+||+|||||||+|+++|.+.+..+
T Consensus 79 --~------------------------------------~---~~~~k~~~~~~y~lad~fEAliGalYLd~~~e~~~~~ 117 (127)
T d1u61a_ 79 --N------------------------------------S---GTVPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEI 117 (127)
T ss_dssp --C------------------------------------S---SCCCTTCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --c------------------------------------C---CCCCcccchhHHHhhhHHHHHHHHHHHcCCHHHHHHH
Confidence 0 0 0000111234568999999999999999999999888
Q ss_pred HhHh
Q 000174 1559 MKWI 1562 (1931)
Q Consensus 1559 ~~~l 1562 (1931)
+.+.
T Consensus 118 i~~~ 121 (127)
T d1u61a_ 118 VYKA 121 (127)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.62 E-value=1.8e-16 Score=162.93 Aligned_cols=94 Identities=17% Similarity=0.200 Sum_probs=83.6
Q ss_pred CCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCC
Q 000174 720 EDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQC 799 (1931)
Q Consensus 720 ~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~ 799 (1931)
...++||||+++.+|+.|++.|+. .++++..+|| +|++ +.|++|+.+|||||+++++||| |++
T Consensus 34 ~~~k~IVFc~t~~~ae~la~~L~~----~G~~~~~~H~-----~~~~-------~~~~~~~~~vlvaTd~~~~GiD-~~v 96 (138)
T d1jr6a_ 34 KGGRHLIFCHSKKKCDELAAKLVA----LGINAVAYYR-----GLDV-------SVIPTNGDVVVVATDALMTGFT-GDF 96 (138)
T ss_dssp TTSCEEEECSCHHHHHHHHHHHHH----HTCEEEEECT-----TCCS-------CCCTTSSCEEEEESSSSCSSSC-CCB
T ss_pred CCCCEEEEeCcHHHHHHHHHHHhc----cccchhhhhc-----cchh-------hhhhhhhcceeehhHHHHhccc-ccc
Confidence 356899999999999999999998 6899999999 7764 3489999999999999999999 999
Q ss_pred CEEEEcC----CCCCHHHHHHhhccCCCCCCcEEEE
Q 000174 800 NVVIRFD----LAKTVLAYIQSRGRARKPGSDYILM 831 (1931)
Q Consensus 800 ~lVI~fD----~p~s~~~yiQr~GRa~R~Gs~~ivl 831 (1931)
++||+|| +|.++.+|+||+||||| |..+++.
T Consensus 97 ~~Vi~~~~~~~~P~~~~~y~qr~GR~gR-g~~G~~~ 131 (138)
T d1jr6a_ 97 DSVIDCNTSDGKPQDAVSRTQRRGRTGR-GKPGIYR 131 (138)
T ss_dssp SEEEECSEETTEECCHHHHHHHHTTBCS-SSCEEEE
T ss_pred ceEEEEEecCCCCCCHHHHHhHhccccC-CCCcEEE
Confidence 9999855 69999999999999999 7775433
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.60 E-value=1e-15 Score=158.85 Aligned_cols=128 Identities=17% Similarity=0.119 Sum_probs=93.2
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQ 397 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~ 397 (1931)
+..||.+|||||||.++...+. ..+.+++|++|+++|++||.+.+.+.++.......++....
T Consensus 9 ~~~ll~apTGsGKT~~~~~~~~---------~~~~~vli~~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~-------- 71 (136)
T d1a1va1 9 QVAHLHAPTGSGKSTKVPAAYA---------AQGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRTIT-------- 71 (136)
T ss_dssp EEEEEECCTTSCTTTHHHHHHH---------TTTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCEEC--------
T ss_pred CEEEEEeCCCCCHHHHHHHHHH---------HcCCcEEEEcChHHHHHHHHHHHHHHhhccccccccccccc--------
Confidence 5689999999999987655432 13557999999999999999999998877766666553321
Q ss_pred hhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecC
Q 000174 398 REFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASP 470 (1931)
Q Consensus 398 ~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP 470 (1931)
....++++|++.+.... ...+.++++||+||||++... .+ ..+..+.........+++|+|||||
T Consensus 72 ---~~~~~~~~~~~~~~~~~---~~~~~~~~~vIiDE~H~~~~~-~~-~~~~~~l~~~~~~~~~~~l~~TATP 136 (136)
T d1a1va1 72 ---TGSPITYSTYGKFLADG---GCSGGAYDIIICDECHSTDAT-SI-LGIGTVLDQAETAGARLVVLATATP 136 (136)
T ss_dssp ---CCCSEEEEEHHHHHHTT---GGGGCCCSEEEEETTTCCSHH-HH-HHHHHHHHHTTTTTCSEEEEEESSC
T ss_pred ---cccceEEEeeeeecccc---chhhhcCCEEEEecccccCHH-HH-HHHHHHHHHHHHCCCCcEEEEeCCC
Confidence 34578999999876433 345789999999999998542 21 2223333333334457899999998
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.59 E-value=3.3e-16 Score=174.05 Aligned_cols=108 Identities=26% Similarity=0.401 Sum_probs=98.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCc
Q 000174 702 VTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRV 781 (1931)
Q Consensus 702 ~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~ 781 (1931)
.+.|+..|.++|.+. .+.++||||++..++..|.+.|. +..+|| .++..+|++++++|++|++
T Consensus 77 ~~~K~~~l~~ll~~~---~~~k~lvf~~~~~~~~~l~~~l~---------~~~i~g-----~~~~~~R~~~l~~F~~~~~ 139 (200)
T d2fwra1 77 SKNKIRKLREILERH---RKDKIIIFTRHNELVYRISKVFL---------IPAITH-----RTSREEREEILEGFRTGRF 139 (200)
T ss_dssp CSHHHHHHHHHHHHT---SSSCBCCBCSCHHHHHHHHHHTT---------CCBCCS-----SSCSHHHHTHHHHHHHSSC
T ss_pred cHHHHHHHHHHHHhC---CCCcEEEEeCcHHHHHHHHhhcC---------cceeeC-----CCCHHHHHHHHHHhhcCCe
Confidence 467999999999875 46799999999999999988764 334789 8999999999999999999
Q ss_pred eEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCC
Q 000174 782 TLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGS 826 (1931)
Q Consensus 782 ~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs 826 (1931)
+|||||+++++|||+|.|++||.||+|||+..|+||+||++|.|+
T Consensus 140 ~vLv~~~~~~~Gidl~~~~~vi~~~~~~s~~~~~Q~iGR~~R~~~ 184 (200)
T d2fwra1 140 RAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSK 184 (200)
T ss_dssp SBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCT
T ss_pred eeeeecchhhcccCCCCCCEEEEeCCCCCHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999999999999999999999976
|
| >d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Double-stranded RNA-binding protein A, second dsRBD species: Xenopus laevis [TaxId: 8355]
Probab=99.58 E-value=1e-15 Score=137.02 Aligned_cols=67 Identities=31% Similarity=0.587 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHh
Q 000174 1854 TRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLN 1927 (1931)
Q Consensus 1854 ~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~ 1927 (1931)
||+.|||+||+++|++|.|+++.++||+|.+.|++.|.|++ ...+|.| +|||+||++||+.||+.|+
T Consensus 2 Pv~~LqE~~q~~~~~~P~Y~~~~~~G~~h~~~F~~~v~v~~----~~~~g~g---~sKK~Aeq~AA~~aL~~L~ 68 (69)
T d1di2a_ 2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVET----FVETGSG---TSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETT----EEEEEEE---SSHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHcCCCCCeEEEEEeeCCCCCcceEEEEEEee----EEEecCc---CcHHHHHHHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999953 3568999 9999999999999999986
|
| >d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: TAR RNA-binding protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=4.8e-15 Score=135.56 Aligned_cols=70 Identities=31% Similarity=0.536 Sum_probs=64.7
Q ss_pred CccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHH
Q 000174 1850 TQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELL 1926 (1931)
Q Consensus 1850 ~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L 1926 (1931)
...|||+.||||||+++|++|.|+++.+.||+|.+.|++.|.|+ +..++|.| +|||+||+.||+.||+.|
T Consensus 7 ~~~npks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~----~~~~~g~G---~SKK~Aeq~AA~~aL~~L 76 (76)
T d2cpna1 7 SECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE----RFIEIGSG---TSKKLAKRNAAAKMLLRV 76 (76)
T ss_dssp CCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEET----TEEEEEEE---SSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCCCEEEEeeeeccCCCccEEEEEEec----ceeecccc---ccHHHHHHHHHHHHHHhC
Confidence 45799999999999999999999999999999999999999994 34568999 999999999999999987
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.54 E-value=3.8e-15 Score=155.00 Aligned_cols=133 Identities=17% Similarity=0.204 Sum_probs=89.8
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQ 397 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~ 397 (1931)
+++||+++||+|||++++..+...... .+.+++|++|+++|+.|+.+.+.. ..+..........
T Consensus 8 ~~~il~~~tGsGKT~~~~~~~~~~~~~-----~~~~vli~~p~~~l~~q~~~~~~~---~~~~~~~~~~~~~-------- 71 (140)
T d1yksa1 8 MTTVLDFHPGAGKTRRFLPQILAECAR-----RRLRTLVLAPTRVVLSEMKEAFHG---LDVKFHTQAFSAH-------- 71 (140)
T ss_dssp CEEEECCCTTSSTTTTHHHHHHHHHHH-----TTCCEEEEESSHHHHHHHHHHTTT---SCEEEESSCCCCC--------
T ss_pred CcEEEEcCCCCChhHHHHHHHHHHhhh-----cCceeeeeecchhHHHHHHHHhhh---hhhhhcccccccc--------
Confidence 789999999999999988776555443 356799999999999999877643 3333322221110
Q ss_pred hhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 398 REFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 398 ~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
......+.++|...+..... ....+.++++|||||||++... .+. .+.+..........++|+|||||.
T Consensus 72 -~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~lvIiDEaH~~~~~-~~~--~~~~~~~~~~~~~~~~l~lTATPp 140 (140)
T d1yksa1 72 -GSGREVIDAMCHATLTYRML-EPTRVVNWEVIIMDEAHFLDPA-SIA--ARGWAAHRARANESATILMTATPP 140 (140)
T ss_dssp -CCSSCCEEEEEHHHHHHHHT-SSSCCCCCSEEEETTTTCCSHH-HHH--HHHHHHHHHHTTSCEEEEECSSCT
T ss_pred -cccccchhhhhHHHHHHHHh-ccccccceeEEEEccccccChh-hHH--HHHHHHHHhhCCCCCEEEEEcCCC
Confidence 11356688889888876544 3467889999999999998432 222 222222211123589999999984
|
| >d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Staufen, domain III species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.54 E-value=1.6e-15 Score=138.33 Aligned_cols=73 Identities=32% Similarity=0.413 Sum_probs=65.8
Q ss_pred CCccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhh
Q 000174 1849 GTQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928 (1931)
Q Consensus 1849 ~~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~ 1928 (1931)
++..|||+.||||||+++|+ |.|+++.++||+|.+.|+++|+|+ +...+|.| +|||+||+.||..||+.|++
T Consensus 4 ~~~k~Pvs~L~E~~q~~~~~-~~y~~~~~~G~~h~~~F~~~v~v~----~~~~~g~G---~SKK~Aeq~AA~~al~~L~~ 75 (76)
T d1ekza_ 4 GDKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVG----SIVTEGEG---NGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CCCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEET----TEEEEECC---CSTTSSSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhCCCC-CeEEEEEeeCCCCCeEEEEEEEEe----eeEeeecc---CcHHHHHHHHHHHHHHHHHc
Confidence 34569999999999999997 889999999999999999999994 34568899 99999999999999999986
Q ss_pred h
Q 000174 1929 W 1929 (1931)
Q Consensus 1929 ~ 1929 (1931)
+
T Consensus 76 l 76 (76)
T d1ekza_ 76 L 76 (76)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=99.53 E-value=1.9e-14 Score=170.16 Aligned_cols=162 Identities=15% Similarity=0.150 Sum_probs=111.0
Q ss_pred CCCcHHHHHHHHHHhc----------cCEEEEeCCCchHHHHHHHHHHHHHHHhhh-cCCCcEEEEEeCChhHHHHHHHH
Q 000174 302 EQARPYQLDVLEQAKK----------KNTIAFLETGAGKTLIAVLLIRSICNDLQR-QNKKMLAVFLVPKVPLVYQQAEV 370 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~----------~n~Il~~~TGsGKTliall~i~~~l~~~~~-~~~~~~vL~LvPT~~Lv~Q~~~~ 370 (1931)
..|+|||.+++.++.+ .++|++++||+|||++++..+..++..... .+...++|||||. .|+.||.++
T Consensus 54 ~~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~~~~~~~~~LIV~P~-sl~~qW~~E 132 (298)
T d1z3ix2 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNE 132 (298)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHHhcccccCCCCcEEEEccc-hhhHHHHHH
Confidence 4699999999998642 469999999999999988877766654321 1223469999997 588999999
Q ss_pred HHHHcC--CcEEEEeCCCcccccc-hHHHHhh---cCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcH
Q 000174 371 IREQTG--YVVGHYCGEMGQDFWD-AQRWQRE---FDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPY 444 (1931)
Q Consensus 371 l~~~~~--l~v~~~~G~~~~~~~~-~~~w~~~---~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~ 444 (1931)
|.++++ ..+..++|+....... ...|... .....|+|+|++.+.... ..+.-.+|++||+||||++.+..+-
T Consensus 133 i~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~--~~l~~~~~~~vI~DEaH~ikn~~s~ 210 (298)
T d1z3ix2 133 VGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNSDNQ 210 (298)
T ss_dssp HHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTTCHH
T ss_pred HHhhcCCceeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccch--hcccccceeeeecccccccccccch
Confidence 999875 4556666654321110 1111111 125679999999987543 3344567899999999999875432
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEeecCCC
Q 000174 445 SLVMSEFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 445 ~~im~~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
.. +..... ...++++|||||+.
T Consensus 211 ~~--~a~~~l----~~~~rllLTGTPi~ 232 (298)
T d1z3ix2 211 TY--LALNSM----NAQRRVLISGTPIQ 232 (298)
T ss_dssp HH--HHHHHH----CCSEEEEECSSCSG
T ss_pred hh--hhhhcc----ccceeeeecchHHh
Confidence 22 112211 23678999999996
|
| >d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: staufen homolog 2 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.53 E-value=6.7e-15 Score=138.18 Aligned_cols=70 Identities=27% Similarity=0.259 Sum_probs=64.8
Q ss_pred cchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhh
Q 000174 1852 TFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928 (1931)
Q Consensus 1852 ~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~ 1928 (1931)
.|||+.||||||+++|++|+|+++.++||+|.+.|+|.|+|++ ...+|.| +|||+||+.||+.||+.|..
T Consensus 6 ~~P~s~LqE~~Q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~----~~~~g~g---~SKK~Ae~~AA~~aL~~l~~ 75 (89)
T d1uhza_ 6 SGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGN----EVATGTG---PNKKIAKKNAAEAMLLQLGY 75 (89)
T ss_dssp SCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETT----EEEEEEE---SSHHHHHHHHHHHHHHHHTS
T ss_pred CCcHHHHHHHHHhcCCCCCEEEeccccccCCceeEEEEEEEee----eeccccc---hHHHHHHHHHHHHHHHHhCc
Confidence 5999999999999999999999999999999999999999963 3568999 99999999999999999853
|
| >d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=99.52 E-value=4.9e-15 Score=132.33 Aligned_cols=68 Identities=29% Similarity=0.419 Sum_probs=63.2
Q ss_pred chHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHh
Q 000174 1853 FTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLN 1927 (1931)
Q Consensus 1853 n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~ 1927 (1931)
||++.||||||+++|++|.|+++.+.||+|.+.|++.|.|++ ..++|.| +|||.||++||+.||+.|+
T Consensus 1 d~Ks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~----~~~~g~g---~sKK~Aeq~AA~~aL~~Lk 68 (68)
T d2nuga2 1 DYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKE----YRTLGEG---KSKKEAEQRAAEELIKLLE 68 (68)
T ss_dssp CHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETT----EEEEEEE---SSHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHcCCCCCEEEEEEeeCCCCCcEEEEEEEECC----EEEEEec---CCHHHHHHHHHHHHHHHhC
Confidence 789999999999999999999999999999999999999963 3568899 9999999999999999884
|
| >d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=8e-15 Score=132.84 Aligned_cols=70 Identities=29% Similarity=0.373 Sum_probs=63.8
Q ss_pred cchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1852 TFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1852 ~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
.|||+.||||||++++ .|.|+++.++||+|.+.|++.|.|++ ....|.| +|||+||+.||+.||+.|+..
T Consensus 2 K~Pis~L~E~~qk~~~-~p~y~~~~~~Gp~h~~~F~~~v~v~~----~~~~g~g---~sKK~Aeq~AA~~al~~L~~~ 71 (73)
T d2dixa1 2 KTPIQVLHEYGMKTKN-IPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEG---TSKKLAKHRAAEAAINILKAN 71 (73)
T ss_dssp CCHHHHHHHHHHHTTC-CCEEEEEEEECSSSSCEEEEEEEETT----EEEEECS---SCTTHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHhCCC-CCEEEEeeeeCCCCCcEEEEEEEEEE----EEEEecc---ccHHHHHHHHHHHHHHHHHhc
Confidence 4899999999999997 79999999999999999999999953 3568889 999999999999999999864
|
| >d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.52 E-value=4.4e-15 Score=133.42 Aligned_cols=68 Identities=26% Similarity=0.250 Sum_probs=62.9
Q ss_pred chHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHH
Q 000174 1853 FTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELL 1926 (1931)
Q Consensus 1853 n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L 1926 (1931)
||++.|||+||+++|++|.|+++..+||+|.+.|++.|.|++..+ +.|.| +|||+|++.||+.||+.|
T Consensus 1 d~Ks~LqE~~Qk~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~---~~g~g---~sKK~Aeq~AA~~aL~~L 68 (69)
T d1o0wa2 1 DYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTI---ATGKG---RTKKEAEKEAARIAYEKL 68 (69)
T ss_dssp CHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEE---EEEEE---SSHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCCCEEEEEEeeCCCCCceEEEEEEECCEEE---EEEEe---CCHHHHHHHHHHHHHHHh
Confidence 789999999999999999999999999999999999999975433 37899 999999999999999987
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.51 E-value=4.3e-14 Score=160.42 Aligned_cols=148 Identities=15% Similarity=0.235 Sum_probs=105.7
Q ss_pred CCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcC
Q 000174 302 EQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG 376 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~ 376 (1931)
..|+|||.+++.++.. .++|++++||+|||++++..+.++.. .+...++|||||. .++.||.+++.+++.
T Consensus 11 ~~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~~~~~~----~~~~~~~LIv~p~-~l~~~W~~e~~~~~~ 85 (230)
T d1z63a1 11 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKK----ENELTPSLVICPL-SVLKNWEEELSKFAP 85 (230)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHH----TTCCSSEEEEECS-TTHHHHHHHHHHHCT
T ss_pred cchhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHHhhhhhhh----cccccccceecch-hhhhHHHHHHHhhcc
Confidence 3699999999988654 56999999999999999988776654 2345679999995 788999999999874
Q ss_pred -CcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhc
Q 000174 377 -YVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTT 455 (1931)
Q Consensus 377 -l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~ 455 (1931)
..+..+.+..... ...+.+|+|+|++.+.+.-. +.-..+++||+||||++.+...... +.....
T Consensus 86 ~~~~~~~~~~~~~~---------~~~~~~vvi~~~~~~~~~~~---l~~~~~~~vI~DEah~~k~~~s~~~--~~~~~l- 150 (230)
T d1z63a1 86 HLRFAVFHEDRSKI---------KLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQTKIF--KAVKEL- 150 (230)
T ss_dssp TSCEEECSSSTTSC---------CGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTTSHHH--HHHHTS-
T ss_pred cccceeeccccchh---------hccCcCEEEeeHHHHHhHHH---HhcccceEEEEEhhhcccccchhhh--hhhhhh-
Confidence 4444433322211 12457899999999864322 2334689999999999987543322 222221
Q ss_pred CCCCCcEEEEEeecCCC
Q 000174 456 SKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 456 ~~~~~p~iLgLTATP~~ 472 (1931)
...++++|||||..
T Consensus 151 ---~a~~r~~LTgTPi~ 164 (230)
T d1z63a1 151 ---KSKYRIALTGTPIE 164 (230)
T ss_dssp ---CEEEEEEECSSCST
T ss_pred ---ccceEEEEecchHH
Confidence 23678999999996
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=99.51 E-value=4.3e-14 Score=168.57 Aligned_cols=118 Identities=15% Similarity=0.179 Sum_probs=108.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCC
Q 000174 701 KVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGR 780 (1931)
Q Consensus 701 ~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~ 780 (1931)
..|+|+..|.++|.......+.|+|||++++.+.+.|.++|.. .++.+..++| .++..+|..++++|+++.
T Consensus 98 ~~S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~----~g~~~~~l~G-----~~~~~~R~~~i~~F~~~~ 168 (346)
T d1z3ix1 98 QLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRN----RRYLYVRLDG-----TMSIKKRAKIVERFNNPS 168 (346)
T ss_dssp GGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHH----HTCCEEEECS-----SCCHHHHHHHHHHHHSTT
T ss_pred ccCHHHHHHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhh----hhcccccccc-----chhHHHHHHHHHhhhccc
Confidence 4588999999999876445678999999999999999999988 6889999999 999999999999999775
Q ss_pred ce---EEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 781 VT---LLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 781 ~~---vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
.. +|++|.++++|||++.|+.||.||++|||..+.|++||++|.|++
T Consensus 169 ~~~~vlLls~~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~ 218 (346)
T d1z3ix1 169 SPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQK 218 (346)
T ss_dssp CCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCC
T ss_pred ccceeeeecchhhhhccccccceEEEEecCCCccchHhHhhhcccccCCC
Confidence 43 788999999999999999999999999999999999999999998
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.51 E-value=6.3e-16 Score=177.69 Aligned_cols=102 Identities=16% Similarity=0.185 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceE
Q 000174 704 PKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTL 783 (1931)
Q Consensus 704 ~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~v 783 (1931)
.|+..|.++|... +.++||||+++.+|+.|+++|.. .+|| ++++.+|.+++++|++|+++|
T Consensus 12 ~~~~~l~~~l~~~----~~~~iif~~~~~~~~~l~~~l~~----------~~hg-----~~~~~~R~~~~~~f~~g~~~v 72 (248)
T d1gkub2 12 ESISTLSSILEKL----GTGGIIYARTGEEAEEIYESLKN----------KFRI-----GIVTATKKGDYEKFVEGEIDH 72 (248)
T ss_dssp CCTTTTHHHHTTS----CSCEEEEESSHHHHHHHHHTTTT----------SSCE-----EECTTSSSHHHHHHHHTSCSE
T ss_pred hHHHHHHHHHHHh----CCCEEEEECCHHHHHHHHHHHHH----------hccC-----CCCHHHHHHHHHHHHhCCCeE
Confidence 4667788888654 46899999999999999999975 1688 999999999999999999999
Q ss_pred EEEe----cccccCCCCCC-CCEEEEcCCCCCHHHHHHhhccCCCCCCcE
Q 000174 784 LVAT----SVAEEGLDIRQ-CNVVIRFDLAKTVLAYIQSRGRARKPGSDY 828 (1931)
Q Consensus 784 LVaT----dVaeeGlDip~-~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ 828 (1931)
|||| ++++||||+|+ |++|||||+|+ |+||+||+||.|..+
T Consensus 73 LVaT~a~~~v~~rGlDip~~v~~VI~~d~P~----~~~r~gR~~R~g~~~ 118 (248)
T d1gkub2 73 LIGTAHYYGTLVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSPQM 118 (248)
T ss_dssp EEEECC------CCSCCTTTCCEEEEESCCE----EEEECSCGGGSCHHH
T ss_pred EEEeccccchhhhccCccccccEEEEeCCCc----chhhhhhhhccCcce
Confidence 9999 89999999996 99999999996 889999999998763
|
| >d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.47 E-value=2.9e-14 Score=132.81 Aligned_cols=74 Identities=27% Similarity=0.424 Sum_probs=66.5
Q ss_pred CCccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhh
Q 000174 1849 GTQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928 (1931)
Q Consensus 1849 ~~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~ 1928 (1931)
.++.|||+.||||||++++. |.|.++.+.||+|.+.|+|.|.|++..++ +|.| +|||+||+.||+.||+.|.+
T Consensus 4 ~~~~~yk~~L~E~~Qk~~~~-~~y~~~~~~Gp~h~~~F~~~v~v~g~~~~---~g~g---~sKK~Aeq~AA~~aL~~L~~ 76 (85)
T d1x49a1 4 DTPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFP---EAKG---RSKQEARNAAAKLAVDILDN 76 (85)
T ss_dssp CCTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCC---CEEE---SSHHHHHHHHHHHHHHHHTT
T ss_pred CCchhHHHHHHHHHHhcCCC-CeEEEEEecCCCCCceEEEEEecCceEee---cccc---ccHHHHHHHHHHHHHHHHHH
Confidence 35679999999999999995 88999999999999999999999865554 7899 99999999999999999986
Q ss_pred h
Q 000174 1929 W 1929 (1931)
Q Consensus 1929 ~ 1929 (1931)
.
T Consensus 77 ~ 77 (85)
T d1x49a1 77 E 77 (85)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.47 E-value=1.2e-14 Score=163.19 Aligned_cols=99 Identities=12% Similarity=0.145 Sum_probs=86.5
Q ss_pred CceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHH----------HHHHHHhhcCCceEEEEeccc
Q 000174 721 DFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQM----------QETIAKFRDGRVTLLVATSVA 790 (1931)
Q Consensus 721 ~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R----------~~~l~~Fr~G~~~vLVaTdVa 790 (1931)
+.|+||||+++..++.|+..|+. .++++..+|| +++++.| .++++.|++|+.++||+|+++
T Consensus 36 ggk~LVFcnSR~~aE~La~~L~~----~Gi~a~~~Hg-----glsq~~R~~~gd~~i~~~~aLe~f~~G~~dvVVaT~~~ 106 (299)
T d1a1va2 36 GGRHLIFCHSKKKCDELAAKLVA----LGINAVAYYR-----GLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTC 106 (299)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHH----TTCCEEEECT-----TSCGGGSCSSSSEEEEECTTC---CCCCBSEEEECCEE
T ss_pred CCCEEEECCcHHHHHHHHHHHHH----CCCCEEEEeC-----CchHHHHHhccchHHHHHHHHHHHhcCCCcEEEEEeeh
Confidence 57999999999999999999998 6899999999 6666654 568899999999999999999
Q ss_pred cc---CCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEE
Q 000174 791 EE---GLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYI 829 (1931)
Q Consensus 791 ee---GlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~i 829 (1931)
++ |+|++.+.+||+||+|.|+.+|+||+||||| |..++
T Consensus 107 a~g~~giDid~V~~VI~~d~P~SvesyIQRiGRTGR-Gr~G~ 147 (299)
T d1a1va2 107 VTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGR-GKPGI 147 (299)
T ss_dssp EEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE
T ss_pred hccCCCCCCCcceEEEeCCCCCCHHHHHhhccccCC-CCCce
Confidence 99 7888889999999999999999999999999 66643
|
| >d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=3e-14 Score=134.14 Aligned_cols=73 Identities=33% Similarity=0.461 Sum_probs=65.8
Q ss_pred CccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1850 TQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1850 ~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
.+.|||+.||||||++++ .|.|.++.++||+|.+.|+|.|.|++..++ +|.| +|||+||+.||+.||+.|++.
T Consensus 11 ~~~~y~s~LqE~~Qk~~~-~p~y~~~~~~Gp~h~~~F~v~v~v~~~~~~---~g~G---~sKK~Aeq~AA~~aL~~L~~~ 83 (90)
T d1qu6a1 11 SAGFFMEELNTYRQKQGV-VLKYQELPNSGPPHDRRFTFQVIIDGREFP---EGEG---RSKKEAKNAAAKLAVEILNKE 83 (90)
T ss_dssp SSCSHHHHHHHHHHHHTC-CCEEEEEESCBTTTBCCEEEEEESSSSCCC---EEEC---CSSHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHhCC-CCcEEEEEeeCCCCCceEEEEEEECceeee---ccCC---CcHHHHHHHHHHHHHHHHHhh
Confidence 356999999999999987 688999999999999999999999765444 8999 999999999999999999864
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.44 E-value=9.1e-15 Score=159.78 Aligned_cols=117 Identities=19% Similarity=0.286 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEeehhHHH--------HHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHH
Q 000174 704 PKVQSLIKILLKYQHTEDFRAIIFVERVVAAL--------VLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAK 775 (1931)
Q Consensus 704 ~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~--------~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~ 775 (1931)
.|...+.+.+++. -..+.++.|.|+.....+ ...+.|.+. .++++++..+|| .|++.+|++++++
T Consensus 13 ~~~~~v~~~I~~e-l~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~-~~p~~~v~~lHG-----~m~~~eke~~m~~ 85 (206)
T d1gm5a4 13 DRVNEVYEFVRQE-VMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKE-VFPEFKLGLMHG-----RLSQEEKDRVMLE 85 (206)
T ss_dssp STHHHHHHHHHHH-TTTSCCBCCBCCCC--------CHHHHHHHSGGGS-CC---CBCCCCS-----SSCCSCSHHHHHH
T ss_pred ccHHHHHHHHHHH-HHcCCCEEEEEeeecccccccchhhHHHHHHHHHh-cCCCCeEEEEee-----cccHHHHHHHHHH
Confidence 3566677777664 345677777787654332 233333321 135788999999 9999999999999
Q ss_pred hhcCCceEEEEecccccCCCCCCCCEEEEcCCCC-CHHHHHHhhccCCCCCCc
Q 000174 776 FRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAK-TVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 776 Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~-s~~~yiQr~GRa~R~Gs~ 827 (1931)
|++|+++|||||+|+|+|||+|++++||++|.|. .+.++.|.+||+||.|.+
T Consensus 86 F~~g~~~iLVaTtViE~GIDip~a~~iii~~a~~fglsqlhQlrGRvGR~~~~ 138 (206)
T d1gm5a4 86 FAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQE 138 (206)
T ss_dssp HTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTT
T ss_pred HHCCCEEEEEEehhhhccccccCCcEEEEEccCCccHHHHHhhhhheeecccc
Confidence 9999999999999999999999999999999997 788889999999999877
|
| >d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.44 E-value=5.1e-14 Score=127.74 Aligned_cols=70 Identities=20% Similarity=0.194 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhhCC
Q 000174 1854 TRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKWYS 1931 (1931)
Q Consensus 1854 ~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~~~ 1931 (1931)
||+.||||||+++++++ |.++ ++||+|.+.|++.|.|++..++ .|.| +|||+|||+||+.||+.|.+..|
T Consensus 1 Y~s~L~E~~Qk~~~~~~-~~~~-~~G~~h~~~F~~~v~v~~~~~~---~g~G---~sKK~Aeq~AA~~Al~~L~~~~~ 70 (76)
T d1x48a1 1 YIGLVNSFAQKKKLSVN-YEQC-EPNSELPQRFICKCKIGQTMYG---TGSG---VTKQEAKQLAAKEAYQKLLKSPP 70 (76)
T ss_dssp HHHHHHHHHHHTTCCEE-EEEC-CCSSSSSCCEEEEEEESSCEEE---EEEE---SSHHHHHHHHHHHHHHHHHHSCC
T ss_pred ChHHHHHHHHHhCCCCc-cccC-CcCCCCCCcEEEEEEECCEEeC---CcCc---cHHHHHHHHHHHHHHHHHHccCC
Confidence 68999999999998775 7655 7899999999999999866554 8999 99999999999999999998654
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.42 E-value=1.1e-13 Score=152.38 Aligned_cols=101 Identities=21% Similarity=0.246 Sum_probs=85.9
Q ss_pred CceEEEEEeehhHHHHHHHHHhcC----CCCCC----------------------ceeEEEEccCCCccccHHHHHHHHH
Q 000174 721 DFRAIIFVERVVAALVLPKVFAEL----PSLSF----------------------VKSASLIGHNNSQEMRTFQMQETIA 774 (1931)
Q Consensus 721 ~~k~IIFv~~r~ta~~L~~~L~~~----~~l~~----------------------~~~~~l~G~~~~~~~~~~~R~~~l~ 774 (1931)
+.++||||++|..|..++..|... ..... ..+++.|| +|++.+|..+.+
T Consensus 40 ~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~-----~l~~~~r~~ie~ 114 (201)
T d2p6ra4 40 NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHA-----GLLNGQRRVVED 114 (201)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECT-----TSCHHHHHHHHH
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccHHHHHH-----HhhhhhHHHHHH
Confidence 578999999998888777666541 00000 12678899 999999999999
Q ss_pred HhhcCCceEEEEecccccCCCCCCCCEEEE-------cCCCCCHHHHHHhhccCCCCCC
Q 000174 775 KFRDGRVTLLVATSVAEEGLDIRQCNVVIR-------FDLAKTVLAYIQSRGRARKPGS 826 (1931)
Q Consensus 775 ~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~-------fD~p~s~~~yiQr~GRa~R~Gs 826 (1931)
.|++|.++|||||+.+++|||+|..++||. ++.|.++.+|+|++|||||.|.
T Consensus 115 ~f~~g~i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~ 173 (201)
T d2p6ra4 115 AFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGM 173 (201)
T ss_dssp HHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTT
T ss_pred HHhCCCceEEEechHHHhhcCCCCceEEEecceeccCCcCCCCHHHHHHHhcccCCCCC
Confidence 999999999999999999999999999996 7788999999999999999884
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.40 E-value=2.9e-13 Score=154.75 Aligned_cols=118 Identities=19% Similarity=0.254 Sum_probs=91.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCC
Q 000174 701 KVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGR 780 (1931)
Q Consensus 701 ~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~ 780 (1931)
..|+|+..|.++|.+.. ..+.|+||||+.+.+.+.|..+|... .++.+..++| +++..+|++++++|+++.
T Consensus 66 ~~S~K~~~l~~~l~~~~-~~g~kviIFs~~~~~~~~l~~~l~~~---~~~~~~~i~G-----~~~~~~R~~~i~~F~~~~ 136 (244)
T d1z5za1 66 RRSGKMIRTMEIIEEAL-DEGDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYG-----ELSKKERDDIISKFQNNP 136 (244)
T ss_dssp TTCHHHHHHHHHHHHHH-HTTCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECT-----TSCHHHHHHHHHHHHHCT
T ss_pred hhhhHHHHHHHHHHhhc-ccccceEEEeeceehHHHHHHHHHhh---ccceEEEEec-----ccchhccchhhhhhhccc
Confidence 45789999999998752 35789999999999999999988652 3577889999 999999999999998664
Q ss_pred -ceEE-EEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 781 -VTLL-VATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 781 -~~vL-VaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
..+| ++|.++++|||++.|++||.||+|||+..+.|++||++|.|++
T Consensus 137 ~~~vll~~~~~~g~Glnl~~a~~vi~~~~~wn~~~~~Qa~~R~~R~Gq~ 185 (244)
T d1z5za1 137 SVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQT 185 (244)
T ss_dssp TCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC-------------
T ss_pred cchhccccccccccccccchhhhhhhcCchhhhHHHhhhcceeeecCCC
Confidence 5655 4558999999999999999999999999999999999999987
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=7.8e-13 Score=142.36 Aligned_cols=108 Identities=22% Similarity=0.309 Sum_probs=98.0
Q ss_pred CCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCC
Q 000174 719 TEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQ 798 (1931)
Q Consensus 719 ~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~ 798 (1931)
..+.++.+.|+.....+.+.+.+++. ++.+++..+|| .|+..++++++.+|++|+++|||||.|+|.|||+|+
T Consensus 29 ~rGgQvy~V~p~I~~~e~~~~~l~~~--~p~~~i~~lHG-----km~~~eke~im~~F~~g~~~ILv~TtvIEvGiDvpn 101 (211)
T d2eyqa5 29 LRGGQVYYLYNDVENIQKAAERLAEL--VPEARIAIGHG-----QMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 101 (211)
T ss_dssp TTTCEEEEECCCSSCHHHHHHHHHHH--CTTSCEEECCS-----SCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTT
T ss_pred HcCCeEEEEEcCccchhhHHHHHHHh--CCceEEEEEEe-----ccCHHHHHHHHHHHHcCCcceEEEehhhhhccCCCC
Confidence 46889999999999999999888874 47789999999 999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCC-CHHHHHHhhccCCCCCCc-EEEEEe
Q 000174 799 CNVVIRFDLAK-TVLAYIQSRGRARKPGSD-YILMIE 833 (1931)
Q Consensus 799 ~~lVI~fD~p~-s~~~yiQr~GRa~R~Gs~-~ivlv~ 833 (1931)
++++|.+|... -+.++-|-+||+||.+.+ |++++.
T Consensus 102 A~~iiI~~a~rfGLaQLhQLRGRVGR~~~~s~c~l~~ 138 (211)
T d2eyqa5 102 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 138 (211)
T ss_dssp EEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEE
T ss_pred CcEEEEecchhccccccccccceeeecCccceEEEEe
Confidence 99999999985 999999999999998765 555554
|
| >d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=4.3e-13 Score=125.96 Aligned_cols=75 Identities=16% Similarity=0.117 Sum_probs=65.4
Q ss_pred CCCccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHh
Q 000174 1848 NGTQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLN 1927 (1931)
Q Consensus 1848 ~~~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~ 1927 (1931)
+....|||++||||||+++++ |.|++ .+.||+|.+.|+++|.|++..++ .|.| +|||+||+.||+.||.+|.
T Consensus 10 ~~~~~n~~s~L~E~~Qk~~~~-~~y~~-~~~g~~h~~~F~~~v~i~g~~~~---~g~G---~sKK~Akq~AA~~Al~~L~ 81 (89)
T d1qu6a2 10 GLSMGNYIGLINRIAQKKRLT-VNYEQ-CASGVHGPEGFHYKCKMGQKEYS---IGTG---STKQEAKQLAAKLAYLQIL 81 (89)
T ss_dssp CCCCCCCHHHHHHHHHHSCCE-EEEEE-EEECSSSSSEEEEEEEEETTBCC---EEEE---SSHHHHHHHHHHHHHHHHH
T ss_pred CccccCHHHHHHHHHHhcCCC-cceee-eccCCCCCCceEEEEEECCcccc---cccc---chHHHHHHHHHHHHHHHHH
Confidence 345679999999999999986 55885 47899999999999999977665 8899 9999999999999999998
Q ss_pred hhC
Q 000174 1928 KWY 1930 (1931)
Q Consensus 1928 ~~~ 1930 (1931)
+..
T Consensus 82 ~~~ 84 (89)
T d1qu6a2 82 SEE 84 (89)
T ss_dssp HCC
T ss_pred ccC
Confidence 753
|
| >d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: ATP-dependent RNA helicase A, Dhx9 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.33 E-value=1.2e-12 Score=127.62 Aligned_cols=74 Identities=20% Similarity=0.258 Sum_probs=62.8
Q ss_pred ccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCC--cceeEECCCCCCHHHHHHHHHHHHHHHHhh
Q 000174 1851 QTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKG--WTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928 (1931)
Q Consensus 1851 ~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~--~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~ 1928 (1931)
..||++.||||||+++.+ |.|++ .+.||+|.+.|+++|+|.....+ ..+.|.| +|||+|+|.||+.||++|.+
T Consensus 25 ~~n~Ks~LqE~~Qk~k~~-p~Y~i-~~~Gp~H~~~F~~~v~i~~~~~~~~~~~~G~G---~sKK~AEq~AA~~~l~~L~~ 99 (113)
T d1uila_ 25 LENAKARLNQYFQKEKIQ-GEYKY-TQVGPDHNRSFIAEMTIYIKQLGRRIFAREHG---SNKKLAAQSCALSLVRQLYH 99 (113)
T ss_dssp HHHHHHHHHHHHHHSCCC-CCCEE-EEESCSTTCEEEEEEEEEETTTTEEEEEECCC---SSHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHhCCCC-CceEE-eeeccCCCCeEEEEEEEeeeccCCeEEeeccc---chHHHHHHHHHHHHHHHHHH
Confidence 479999999999999975 99995 67899999999999999765433 3345667 99999999999999999976
Q ss_pred h
Q 000174 1929 W 1929 (1931)
Q Consensus 1929 ~ 1929 (1931)
+
T Consensus 100 ~ 100 (113)
T d1uila_ 100 L 100 (113)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: ATP-dependent RNA helicase A, Dhx9 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.31 E-value=7.6e-13 Score=126.19 Aligned_cols=71 Identities=21% Similarity=0.267 Sum_probs=62.0
Q ss_pred ccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhh
Q 000174 1851 QTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928 (1931)
Q Consensus 1851 ~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~ 1928 (1931)
..|+++.||||||++++. |.|++. +.||+|.+.|++.|.|++..+ .+.|.| +|||+|||.||+.||+.|.+
T Consensus 5 ~~~~Ks~LqE~~qk~k~~-P~Y~~~-~~G~~h~~~F~~~v~v~g~~~--~~~g~g---~sKK~AEq~AA~~al~~L~~ 75 (99)
T d1whqa_ 5 SSGIKNFLYAWCGKRKMT-PAYEIR-AVGNKNRQKFMCEVRVEGFNY--AGMGNS---TNKKDAQSNAARDFVNYLVR 75 (99)
T ss_dssp CCSSHHHHHHHHHHTTCC-CEEEEE-EEECSSSEEEEEEEECTTCSC--CEEEEE---SSHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhCCCC-CeEEEe-cccCCCCceEEEEEEeccccc--eeccCC---ccHHHHHHHHHHHHHHHHHH
Confidence 368999999999999985 999964 679999999999999975433 348899 99999999999999999965
|
| >d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Dgcr8 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=1.5e-12 Score=121.19 Aligned_cols=69 Identities=23% Similarity=0.201 Sum_probs=60.3
Q ss_pred ccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHh
Q 000174 1851 QTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLN 1927 (1931)
Q Consensus 1851 ~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~ 1927 (1931)
..|||+.||||||++++..|.|.++...||+| .|++.|.|++..+ ..|.| +|||.||+.||+.||+.|.
T Consensus 8 ~K~p~s~LqE~~Qk~~~~~p~Y~~~~~~g~~~--~F~~~v~i~g~~~---~~g~G---~sKK~Aeq~AA~~AL~~L~ 76 (85)
T d1x47a1 8 GKSEVCILHEYMQRVLKVRPVYNFFECENPSE--PFGASVTIDGVTY---GSGTA---SSKKLAKNKAARATLEILI 76 (85)
T ss_dssp CCCHHHHHHHHHHHHTCSCCEEEEEECSSSSC--CEEEEEEETTEEE---EEEEE---SSHHHHHHHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHHhCCCCCCeEEEecCCCCC--CEEEEEEECCEEE---ecCCc---chHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999988777654 6999999975544 38899 9999999999999999885
|
| >d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-specific editase 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.27 E-value=1.5e-12 Score=116.36 Aligned_cols=67 Identities=28% Similarity=0.236 Sum_probs=59.3
Q ss_pred ccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1851 QTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1851 ~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
..||++.|||+|++ +.|+++.++||+|.+.|++.|.|++. ...|+| +|||+||++||+.||+.|.++
T Consensus 3 ~Knpv~~L~E~~~~-----~~y~~~~~~G~~h~~~F~~~v~v~~~----~~~g~G---~SKK~Ak~~AA~~aL~~L~~~ 69 (71)
T d2b7va1 3 GKNPVMILNELRPG-----LKYDFLSESGESHAKSFVMSVVVDGQ----FFEGSG---RNKKLAKARAAQSALATVFNL 69 (71)
T ss_dssp SSCHHHHHHHHCCS-----CEEEEEECCCCTTTCCEEEEEECSSC----EEEEEE---SSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHccC-----CeEEEeeeeCCCCCCeEEEEEEECCE----EEEecC---CCHHHHHHHHHHHHHHHHHcc
Confidence 35999999999864 56999999999999999999999643 557899 999999999999999999764
|
| >d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-specific editase 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.16 E-value=2.6e-11 Score=108.90 Aligned_cols=67 Identities=34% Similarity=0.348 Sum_probs=57.6
Q ss_pred CccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhh
Q 000174 1850 TQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928 (1931)
Q Consensus 1850 ~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~ 1928 (1931)
.+.||++.|+|+ .+.|.|+++.++||+|.+.|++.|+|++. .++|.| +|||+||++||+.||+.|.+
T Consensus 5 ~pK~~l~~L~e~-----~~~~~y~~~~~~G~~h~~~F~~~v~v~~~----~~~g~G---~SKK~Aeq~AA~~aL~~l~~ 71 (73)
T d2b7ta1 5 LPKNALMQLNEI-----KPGLQYMLLSQTGPVHAPLFVMSVEVNGQ----VFEGSG---PTKKKAKLHAAEKALRSFVQ 71 (73)
T ss_dssp SSHHHHHHHHHH-----CSCCEEEEEEEECSSSSCEEEEEEESSSS----EEEEEE---SSHHHHHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHhc-----CCCCEEEEEEeeCCCCCceEEEEEEECCE----EEEcCC---CcHHHHHHHHHHHHHHHHhh
Confidence 345777777776 26789999999999999999999999633 558999 99999999999999999976
|
| >d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Spermatid perinuclear RNA-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=4.8e-11 Score=110.06 Aligned_cols=66 Identities=36% Similarity=0.435 Sum_probs=58.7
Q ss_pred CccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHh
Q 000174 1850 TQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLN 1927 (1931)
Q Consensus 1850 ~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~ 1927 (1931)
+..||++.|||+ .+.|.|+++.++||+|.+.|++.|+|++ ..+.|+| +|||+||++||..||+.|.
T Consensus 10 ~~~n~~~~L~e~-----~~~~~Y~~~~~~Gp~h~~~F~~~v~v~g----~~~~g~G---~SKK~Aeq~AA~~aL~~L~ 75 (84)
T d2dmya1 10 DLMNALMRLNQI-----RPGLQYKLLSQSGPVHAPVFTMSVDVDG----TTYEASG---PSKKTAKLHVAVKVLQAMG 75 (84)
T ss_dssp SCTHHHHHHHHH-----SCSCCCEEEEEESCSSSCEEEEEEEETT----EEEEEEE---SSHHHHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHh-----CCCCeEEEEEeeCCCCCCeEEEEEEECC----EEEEcCC---CCHHHHHHHHHHHHHHHhC
Confidence 457999999997 2678999999999999999999999963 3567999 9999999999999999995
|
| >d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.11 E-value=4.1e-11 Score=119.31 Aligned_cols=70 Identities=24% Similarity=0.275 Sum_probs=58.5
Q ss_pred CccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHh
Q 000174 1850 TQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLN 1927 (1931)
Q Consensus 1850 ~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~ 1927 (1931)
...||++.||||||+++|++|.|+++.+ .|.+.|++.|.|++..+. .|...+|||+|||+||+.||+.|.
T Consensus 24 ~~~~pKs~LqE~~Qk~~~~~P~Y~~~~~---~~~~~F~~~V~v~g~~~~-----s~~g~~SKK~AEq~AA~~AL~~Lg 93 (128)
T d1whna_ 24 PQITPKMCLLEWCRREKLPQPVYETVQR---TIDRMFCSVVTVAEQKYQ-----STLWDKSKKLAEQTAAIVCLRSQG 93 (128)
T ss_dssp TTCCHHHHHHHHHHHTTCCCCCCCEEEC---SSSCCEEEEEEETTEEEE-----ESSCBSSHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCCCCCeEEEeec---ccCCCCEEEEEECCeEee-----ccCCcccHHHHHHHHHHHHHHHhC
Confidence 3479999999999999999999997764 367899999999755443 232348999999999999999995
|
| >d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.97 E-value=1.6e-10 Score=106.07 Aligned_cols=72 Identities=17% Similarity=0.040 Sum_probs=58.3
Q ss_pred CccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhh
Q 000174 1850 TQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928 (1931)
Q Consensus 1850 ~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~ 1928 (1931)
...|+++.|||+||+.++. |.|+++...||.| +.|++.|.|.. ....+.|.| +|||.|+|+||+.||+.+.-
T Consensus 4 id~~~K~~L~e~~~~~g~~-P~Y~~~~~~~~~~-~~f~v~~~v~~--~~~~~~g~g---~SKK~AEq~AA~~aL~~~~~ 75 (81)
T d1t4oa_ 4 LDMNAKRQLYSLIGYASLR-LHYVTVKKPTAVD-PNSIVECRVGD--GTVLGTGVG---RNIKIAGIRAAENALRDKKM 75 (81)
T ss_dssp CCTTHHHHHHHHHCCGGGC-CEEEEEECCCSSC-CCEEEEEECTT--CCEEEEEEE---SSHHHHHHHHHHHHHHCHHH
T ss_pred cccCHHHHHHHHHhcCCCC-cEEEEeccCCCCC-CCEEEEEEEec--CceEEeccc---chhhHHHHHHHHHHHHhccH
Confidence 3468999999999999986 9999998766666 55778887742 233457899 99999999999999987753
|
| >d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.96 E-value=5.8e-10 Score=100.66 Aligned_cols=65 Identities=17% Similarity=0.194 Sum_probs=59.2
Q ss_pred ChHHHHHHHHhhcCCceeEEeccCC----eEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhh
Q 000174 1767 PVRELQERCQQQAEGLEYKASRSGN----LATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEKE 1831 (1931)
Q Consensus 1767 P~~~L~e~~~~~~~~~~y~~~~~g~----~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~ 1831 (1931)
+++.|+|+||+++..+.|++...|+ .|+|.|.|+|..++.|.|.|||+||+.||+.||..|....
T Consensus 1 Y~s~L~E~~Qk~~~~~~~~~~~~G~~h~~~F~~~v~v~~~~~~~g~G~sKK~Aeq~AA~~Al~~L~~~~ 69 (76)
T d1x48a1 1 YIGLVNSFAQKKKLSVNYEQCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSP 69 (76)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHSC
T ss_pred ChHHHHHHHHHhCCCCccccCCcCCCCCCcEEEEEEECCEEeCCcCccHHHHHHHHHHHHHHHHHHccC
Confidence 4789999999999888998877664 6999999999999999999999999999999999998763
|
| >d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=5.2e-10 Score=100.70 Aligned_cols=65 Identities=22% Similarity=0.270 Sum_probs=58.0
Q ss_pred CCChHHHHHHHHhhcCCceeEEe-ccC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhh
Q 000174 1765 MHPVRELQERCQQQAEGLEYKAS-RSG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEK 1830 (1931)
Q Consensus 1765 ~~P~~~L~e~~~~~~~~~~y~~~-~~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 1830 (1931)
+||++.||||||+++..+.|++. .+| +.|+|.|.|++. ++.|.|.|||+||+.||+.||..|+..
T Consensus 2 K~Pis~L~E~~qk~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~g~g~sKK~Aeq~AA~~al~~L~~~ 71 (73)
T d2dixa1 2 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDI-TCTGEGTSKKLAKHRAAEAAINILKAN 71 (73)
T ss_dssp CCHHHHHHHHHHHTTCCCEEEEEEEECSSSSCEEEEEEEETTE-EEEECSSCTTHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHhCCCCCEEEEeeeeCCCCCcEEEEEEEEEEE-EEEeccccHHHHHHHHHHHHHHHHHhc
Confidence 69999999999999888899865 444 479999999987 689999999999999999999999864
|
| >d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=7.3e-10 Score=103.64 Aligned_cols=70 Identities=16% Similarity=0.146 Sum_probs=62.5
Q ss_pred CCCCCChHHHHHHHHhhcCCceeEEeccC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhh
Q 000174 1762 TLPMHPVRELQERCQQQAEGLEYKASRSG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEKE 1831 (1931)
Q Consensus 1762 ~~~~~P~~~L~e~~~~~~~~~~y~~~~~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~ 1831 (1931)
....||++.|+||||+++..+.|++...| +.|+|.|.|+|+.++.|.|.|||+||+.||+.||..|....
T Consensus 11 ~~~~n~~s~L~E~~Qk~~~~~~y~~~~~g~~h~~~F~~~v~i~g~~~~~g~G~sKK~Akq~AA~~Al~~L~~~~ 84 (89)
T d1qu6a2 11 LSMGNYIGLINRIAQKKRLTVNYEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEE 84 (89)
T ss_dssp CCCCCCHHHHHHHHHHSCCEEEEEEEEECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHHHHHHCC
T ss_pred ccccCHHHHHHHHHHhcCCCcceeeeccCCCCCCceEEEEEECCccccccccchHHHHHHHHHHHHHHHHHccC
Confidence 34579999999999999888899876654 37999999999999999999999999999999999998764
|
| >d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Dgcr8 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=1e-09 Score=101.67 Aligned_cols=65 Identities=29% Similarity=0.269 Sum_probs=57.8
Q ss_pred CCCChHHHHHHHHhhcCC-ceeEEecc-C--CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHH
Q 000174 1764 PMHPVRELQERCQQQAEG-LEYKASRS-G--NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLK 1828 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~-~~y~~~~~-g--~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~ 1828 (1931)
.+||++.|||+||+.+.. +.|.+... | ..|+|.|.|+|..+++|.|.|||.|++.||+.||+.|.
T Consensus 8 ~K~p~s~LqE~~Qk~~~~~p~Y~~~~~~g~~~~F~~~v~i~g~~~~~g~G~sKK~Aeq~AA~~AL~~L~ 76 (85)
T d1x47a1 8 GKSEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILI 76 (85)
T ss_dssp CCCHHHHHHHHHHHHTCSCCEEEEEECSSSSCCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCEEEEEEECCEEEecCCcchHHHHHHHHHHHHHHHHH
Confidence 679999999999998765 59987543 3 36999999999999999999999999999999999984
|
| >d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.91 E-value=1.3e-09 Score=97.06 Aligned_cols=62 Identities=32% Similarity=0.324 Sum_probs=55.6
Q ss_pred CChHHHHHHHHhhcCC-ceeEEecc-C----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 000174 1766 HPVRELQERCQQQAEG-LEYKASRS-G----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVL 1827 (1931)
Q Consensus 1766 ~P~~~L~e~~~~~~~~-~~y~~~~~-g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L 1827 (1931)
|||+.|+|+||+++.. |.|++... | +.|++.|.|+|..++.|.|.|||+|++.||+.||+.|
T Consensus 1 d~Ks~LqE~~Qk~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~~~g~g~sKK~Aeq~AA~~aL~~L 68 (69)
T d1o0wa2 1 DYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKL 68 (69)
T ss_dssp CHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCCCEEEEEEeeCCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 6899999999999876 59986543 4 4799999999999999999999999999999999987
|
| >d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: TAR RNA-binding protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=2.1e-09 Score=97.53 Aligned_cols=68 Identities=28% Similarity=0.375 Sum_probs=58.4
Q ss_pred CCCCCCCCChHHHHHHHHhhcCCc-eeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 000174 1759 TPETLPMHPVRELQERCQQQAEGL-EYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVL 1827 (1931)
Q Consensus 1759 ~~~~~~~~P~~~L~e~~~~~~~~~-~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L 1827 (1931)
.+.....||++.|||+||+++..+ .|++.. .| +.|+|.|.+++.. ++|.|.|||+|++.||+.||+.|
T Consensus 3 ~~~~~~~npks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~-~~g~G~SKK~Aeq~AA~~aL~~L 76 (76)
T d2cpna1 3 SPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFI-EIGSGTSKKLAKRNAAAKMLLRV 76 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCccCCCCHHHHHHHHHHHcCCCCCEEEEeeeeccCCCccEEEEEEeccee-eccccccHHHHHHHHHHHHHHhC
Confidence 344557899999999999999885 999654 44 4799999998865 99999999999999999999886
|
| >d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.88 E-value=9.3e-10 Score=101.93 Aligned_cols=69 Identities=26% Similarity=0.306 Sum_probs=61.7
Q ss_pred CCCCChHHHHHHHHhhcCCceeEEe-ccC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhh
Q 000174 1763 LPMHPVRELQERCQQQAEGLEYKAS-RSG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEKE 1831 (1931)
Q Consensus 1763 ~~~~P~~~L~e~~~~~~~~~~y~~~-~~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~ 1831 (1931)
.+.++++.|+||||+++..+.|++. ..| +.|+|.|.|+|..++.|.|.|||+||+.||+.||..|....
T Consensus 5 ~~~~yk~~L~E~~Qk~~~~~~y~~~~~~Gp~h~~~F~~~v~v~g~~~~~g~g~sKK~Aeq~AA~~aL~~L~~~~ 78 (85)
T d1x49a1 5 TPGFYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNEN 78 (85)
T ss_dssp CTTHHHHHHHHHHHHHTCCEEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTTC
T ss_pred CchhHHHHHHHHHHhcCCCCeEEEEEecCCCCCceEEEEEecCceEeeccccccHHHHHHHHHHHHHHHHHHcC
Confidence 4679999999999999988899865 334 48999999999999999999999999999999999998764
|
| >d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: ATP-dependent RNA helicase A, Dhx9 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.87 E-value=2.2e-09 Score=101.99 Aligned_cols=72 Identities=24% Similarity=0.273 Sum_probs=62.2
Q ss_pred CCCChHHHHHHHHhhcCCceeEEeccCC----eEEEEEEECCEE-EEEeecCCHHHHHHHHHHHHHHHHHhhhhhhh
Q 000174 1764 PMHPVRELQERCQQQAEGLEYKASRSGN----LATVEVYIDGVQ-VGVAQNPQKKMAQKLAARNALAVLKEKETAEA 1835 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~~~y~~~~~g~----~f~v~V~v~g~~-~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~ 1835 (1931)
..|+|+.||||||+++..+.|++...|+ .|+|.|.|+|.. ++.|.|.|||+|++.||+.||+.|.....+..
T Consensus 5 ~~~~Ks~LqE~~qk~k~~P~Y~~~~~G~~h~~~F~~~v~v~g~~~~~~g~g~sKK~AEq~AA~~al~~L~~~~~~~~ 81 (99)
T d1whqa_ 5 SSGIKNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRINEVKS 81 (99)
T ss_dssp CCSSHHHHHHHHHHTTCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHHTSSCT
T ss_pred CccHHHHHHHHHHhCCCCCeEEEecccCCCCceEEEEEEeccccceeccCCccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 4689999999999998888999876653 799999999865 59999999999999999999999987655433
|
| >d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=9e-10 Score=103.12 Aligned_cols=69 Identities=29% Similarity=0.316 Sum_probs=61.3
Q ss_pred CCCCChHHHHHHHHhhcCCceeEEe-ccC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhh
Q 000174 1763 LPMHPVRELQERCQQQAEGLEYKAS-RSG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEKE 1831 (1931)
Q Consensus 1763 ~~~~P~~~L~e~~~~~~~~~~y~~~-~~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~ 1831 (1931)
.+.++++.||||||+++..+.|.+. ..| +.|+|.|.|+|..+++|.|.|||+|++.||+.||+.|....
T Consensus 11 ~~~~y~s~LqE~~Qk~~~~p~y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Aeq~AA~~aL~~L~~~~ 84 (90)
T d1qu6a1 11 SAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEK 84 (90)
T ss_dssp SSCSHHHHHHHHHHHHTCCCEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHHHhCCCCcEEEEEeeCCCCCceEEEEEEECceeeeccCCCcHHHHHHHHHHHHHHHHHhhC
Confidence 4668999999999999888899865 444 37999999999999999999999999999999999998653
|
| >d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Staufen, domain III species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.83 E-value=1.1e-09 Score=99.28 Aligned_cols=66 Identities=20% Similarity=0.273 Sum_probs=58.7
Q ss_pred CCCCChHHHHHHHHhhcCCceeEEecc-C----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 000174 1763 LPMHPVRELQERCQQQAEGLEYKASRS-G----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKE 1829 (1931)
Q Consensus 1763 ~~~~P~~~L~e~~~~~~~~~~y~~~~~-g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1829 (1931)
..+||++.|+||||+++..+.|++... | +.|+|.|.|++. +++|.|.|||+||+.||+.||+.|+.
T Consensus 5 ~~k~Pvs~L~E~~q~~~~~~~y~~~~~~G~~h~~~F~~~v~v~~~-~~~g~G~SKK~Aeq~AA~~al~~L~~ 75 (76)
T d1ekza_ 5 DKKSPISQVHEIGIKRNMTVHFKVLREEGPAHMKNFITACIVGSI-VTEGEGNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CCSCHHHHHHHHHHHTTCCCEEEESSSCCSSSCSCSSEEEEETTE-EEEECCCSTTSSSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCeEEEEEeeCCCCCeEEEEEEEEeee-EeeeccCcHHHHHHHHHHHHHHHHHc
Confidence 458999999999999999999997654 5 379999999886 58999999999999999999999975
|
| >d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Double-stranded RNA-binding protein A, second dsRBD species: Xenopus laevis [TaxId: 8355]
Probab=98.82 E-value=3.9e-09 Score=93.61 Aligned_cols=61 Identities=28% Similarity=0.395 Sum_probs=54.7
Q ss_pred ChHHHHHHHHhhcCCc-eeEEecc-C----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHH
Q 000174 1767 PVRELQERCQQQAEGL-EYKASRS-G----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLK 1828 (1931)
Q Consensus 1767 P~~~L~e~~~~~~~~~-~y~~~~~-g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~ 1828 (1931)
|+++|||+||++++.+ .|++... | +.|+|.|.|+|.. ++|.|.|||+|++.||+.||+.|+
T Consensus 2 Pv~~LqE~~q~~~~~~P~Y~~~~~~G~~h~~~F~~~v~v~~~~-~~g~g~sKK~Aeq~AA~~aL~~L~ 68 (69)
T d1di2a_ 2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFV-ETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHcCCCCCeEEEEEeeCCCCCcceEEEEEEeeEE-EecCcCcHHHHHHHHHHHHHHHhc
Confidence 8999999999999885 9997544 4 4799999999976 699999999999999999999986
|
| >d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=98.79 E-value=4.8e-09 Score=92.90 Aligned_cols=62 Identities=26% Similarity=0.234 Sum_probs=54.2
Q ss_pred CChHHHHHHHHhhcCC-ceeEEecc-C----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHH
Q 000174 1766 HPVRELQERCQQQAEG-LEYKASRS-G----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLK 1828 (1931)
Q Consensus 1766 ~P~~~L~e~~~~~~~~-~~y~~~~~-g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~ 1828 (1931)
||++.||||||+++.. |.|++... | +.|+|.|.|+|. .++|.|.|||.|++.||+.||+.|+
T Consensus 1 d~Ks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~-~~~g~g~sKK~Aeq~AA~~aL~~Lk 68 (68)
T d2nuga2 1 DYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGEGKSKKEAEQRAAEELIKLLE 68 (68)
T ss_dssp CHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHcCCCCCEEEEEEeeCCCCCcEEEEEEEECCE-EEEEecCCHHHHHHHHHHHHHHHhC
Confidence 6899999999999876 59986543 3 489999999996 5899999999999999999999884
|
| >d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: ATP-dependent RNA helicase A, Dhx9 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.76 E-value=5.6e-09 Score=101.42 Aligned_cols=70 Identities=20% Similarity=0.155 Sum_probs=61.4
Q ss_pred CCChHHHHHHHHhhcCCceeEEeccC----CeEEEEEEE-----CCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhhhh
Q 000174 1765 MHPVRELQERCQQQAEGLEYKASRSG----NLATVEVYI-----DGVQVGVAQNPQKKMAQKLAARNALAVLKEKETAE 1834 (1931)
Q Consensus 1765 ~~P~~~L~e~~~~~~~~~~y~~~~~g----~~f~v~V~v-----~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~ 1834 (1931)
.|||+.||||||+++..+.|++...| +.|+|+|.| ++..+++|.|.|||+|++.||+.||+.|...+.+.
T Consensus 26 ~n~Ks~LqE~~Qk~k~~p~Y~i~~~Gp~H~~~F~~~v~i~~~~~~~~~~~~G~G~sKK~AEq~AA~~~l~~L~~~g~i~ 104 (113)
T d1uila_ 26 ENAKARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHLGVIE 104 (113)
T ss_dssp HHHHHHHHHHHHHSCCCCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHHTSSC
T ss_pred cCHHHHHHHHHHhCCCCCceEEeeeccCCCCeEEEEEEEeeeccCCeEEeecccchHHHHHHHHHHHHHHHHHHcCCcC
Confidence 58999999999999888899987666 379999998 56788999999999999999999999998766544
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=98.76 E-value=4.9e-09 Score=120.49 Aligned_cols=98 Identities=15% Similarity=0.127 Sum_probs=76.0
Q ss_pred CceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCC
Q 000174 721 DFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCN 800 (1931)
Q Consensus 721 ~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~ 800 (1931)
..+++|||++...+..+++.|+. .+.++..+|| .+...+++ +|++|+.+|||||+++|.|||+ ++.
T Consensus 36 ~g~~~~F~~s~~~~~~~a~~L~~----~g~~V~~l~~-----~~~~~e~~----~~~~~~~~~~~~t~~~~~~~~~-~~~ 101 (299)
T d1yksa2 36 KRPTAWFLPSIRAANVMAASLRK----AGKSVVVLNR-----KTFEREYP----TIKQKKPDFILATDIAEMGANL-CVE 101 (299)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHH----TTCCEEECCS-----SSCC------------CCCSEEEESSSTTCCTTC-CCS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHh----cCCeEEEEcC-----cCcHhHHh----hhhcCCcCEEEEechhhhceec-Cce
Confidence 56899999999999999999998 6789999999 66655543 5789999999999999999999 599
Q ss_pred EEEEcCC-------------------CCCHHHHHHhhccCCCCCCc-EEEEE
Q 000174 801 VVIRFDL-------------------AKTVLAYIQSRGRARKPGSD-YILMI 832 (1931)
Q Consensus 801 lVI~fD~-------------------p~s~~~yiQr~GRa~R~Gs~-~ivlv 832 (1931)
+||.+.+ |.+..+-.||+||+||.+.+ +.+++
T Consensus 102 ~vid~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~~~~~~~ 153 (299)
T d1yksa2 102 RVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYY 153 (299)
T ss_dssp EEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEE
T ss_pred EEEecCceeceeeecCCCCeeEEeeeecCHHHHHHhcccccccCCCceEEEE
Confidence 9985443 24788899999999997543 33333
|
| >d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: staufen homolog 2 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.75 E-value=1e-08 Score=95.48 Aligned_cols=67 Identities=25% Similarity=0.279 Sum_probs=58.1
Q ss_pred CCCChHHHHHHHHhhcCCc-eeEEecc-C----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhh
Q 000174 1764 PMHPVRELQERCQQQAEGL-EYKASRS-G----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEKE 1831 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~~-~y~~~~~-g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~ 1831 (1931)
..||++.|+||||++++.+ .|++... | +.|+|.|.|+|.. .+|.|.|||+||+.||+.||+.|....
T Consensus 5 ~~~P~s~LqE~~Q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~-~~g~g~SKK~Ae~~AA~~aL~~l~~~~ 77 (89)
T d1uhza_ 5 SSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEV-ATGTGPNKKIAKKNAAEAMLLQLGYKA 77 (89)
T ss_dssp SSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHHTSSH
T ss_pred CCCcHHHHHHHHHhcCCCCCEEEeccccccCCceeEEEEEEEeeee-ccccchHHHHHHHHHHHHHHHHhCccC
Confidence 4699999999999999875 9997543 3 4799999999986 599999999999999999999996543
|
| >d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.70 E-value=1.2e-08 Score=93.45 Aligned_cols=71 Identities=27% Similarity=0.242 Sum_probs=60.4
Q ss_pred CCCCCChHHHHHHHHhhcCCceeEEeccC----CeEEEEEEE-CCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhh
Q 000174 1762 TLPMHPVRELQERCQQQAEGLEYKASRSG----NLATVEVYI-DGVQVGVAQNPQKKMAQKLAARNALAVLKEKET 1832 (1931)
Q Consensus 1762 ~~~~~P~~~L~e~~~~~~~~~~y~~~~~g----~~f~v~V~v-~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~ 1832 (1931)
.+.+|+++.|+|||++.+..|.|++...+ +.|.|.|.+ ++..++.|.|.|||.|++.||+.||+.++....
T Consensus 3 ~id~~~K~~L~e~~~~~g~~P~Y~~~~~~~~~~~~f~v~~~v~~~~~~~~g~g~SKK~AEq~AA~~aL~~~~~l~k 78 (81)
T d1t4oa_ 3 KLDMNAKRQLYSLIGYASLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKMLDF 78 (81)
T ss_dssp CCCTTHHHHHHHHHCCGGGCCEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHHHHHH
T ss_pred ccccCHHHHHHHHHhcCCCCcEEEEeccCCCCCCCEEEEEEEecCceEEecccchhhHHHHHHHHHHHHhccHHHH
Confidence 46789999999999999988999987664 357777765 568889999999999999999999998876544
|
| >d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.67 E-value=3.6e-08 Score=97.72 Aligned_cols=66 Identities=18% Similarity=0.145 Sum_probs=58.6
Q ss_pred CCCChHHHHHHHHhhcCCc-eeEEeccC--CeEEEEEEECCEEEEEeec-CCHHHHHHHHHHHHHHHHHh
Q 000174 1764 PMHPVRELQERCQQQAEGL-EYKASRSG--NLATVEVYIDGVQVGVAQN-PQKKMAQKLAARNALAVLKE 1829 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~~-~y~~~~~g--~~f~v~V~v~g~~~~~g~g-~skk~Ak~~AA~~AL~~L~~ 1829 (1931)
.++||+.||||||++++.+ .|++...+ +.|++.|.|+|+.++.+.+ .|||+|++.||+.||+.|..
T Consensus 25 ~~~pKs~LqE~~Qk~~~~~P~Y~~~~~~~~~~F~~~V~v~g~~~~s~~g~~SKK~AEq~AA~~AL~~Lg~ 94 (128)
T d1whna_ 25 QITPKMCLLEWCRREKLPQPVYETVQRTIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGL 94 (128)
T ss_dssp TCCHHHHHHHHHHHTTCCCCCCCEEECSSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHhcCCCCCeEEEeecccCCCCEEEEEECCeEeeccCCcccHHHHHHHHHHHHHHHhCC
Confidence 5799999999999998865 99876653 5799999999999998876 69999999999999999953
|
| >d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-specific editase 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.59 E-value=2.8e-08 Score=88.20 Aligned_cols=62 Identities=31% Similarity=0.321 Sum_probs=53.3
Q ss_pred CCCChHHHHHHHHhhcCCceeEEe-ccC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhh
Q 000174 1764 PMHPVRELQERCQQQAEGLEYKAS-RSG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEK 1830 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~~~y~~~-~~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 1830 (1931)
.+||++.|+|+|++ ++|++. .+| +.|+|.|.|+|..+ +|.|.|||+||++||+.||+.|...
T Consensus 3 ~Knpv~~L~E~~~~----~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~g~G~SKK~Ak~~AA~~aL~~L~~~ 69 (71)
T d2b7va1 3 GKNPVMILNELRPG----LKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFNL 69 (71)
T ss_dssp SSCHHHHHHHHCCS----CEEEEEECCCCTTTCCEEEEEECSSCEE-EEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHccC----CeEEEeeeeCCCCCCeEEEEEEECCEEE-EecCCCHHHHHHHHHHHHHHHHHcc
Confidence 57999999999853 678865 444 47999999999986 8999999999999999999998754
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.33 E-value=1.4e-06 Score=90.11 Aligned_cols=122 Identities=14% Similarity=0.150 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCce
Q 000174 703 TPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVT 782 (1931)
Q Consensus 703 s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~ 782 (1931)
..|..++++.+.+. +..+..+||||.+....+.|+.+|++ .+++...++. ... +++..+-...-..-.
T Consensus 17 ~eK~~AIi~eV~~~-~~~grPVLIgT~SIe~SE~ls~~L~~----~gi~h~vLnA-----k~~--~~Ea~II~~Ag~~g~ 84 (175)
T d1tf5a4 17 EGKFKAVAEDVAQR-YMTGQPVLVGTVAVETSELISKLLKN----KGIPHQVLNA-----KNH--EREAQIIEEAGQKGA 84 (175)
T ss_dssp HHHHHHHHHHHHHH-HHHTCCEEEEESCHHHHHHHHHHHHT----TTCCCEEECS-----SCH--HHHHHHHTTTTSTTC
T ss_pred HHHHHHHHHHHHHH-HhcCCCEEEEeCcHHHHHHHHHHHHH----cCCCceeehh-----hhH--HHHHHHHHhccCCCc
Confidence 46888888888764 44567899999999999999999998 6788888877 332 333333333333345
Q ss_pred EEEEecccccCCCCCCCC--------EEEEcCCCCCHHHHHHhhccCCCCCCc--EEEEEecCC
Q 000174 783 LLVATSVAEEGLDIRQCN--------VVIRFDLAKTVLAYIQSRGRARKPGSD--YILMIERGN 836 (1931)
Q Consensus 783 vLVaTdVaeeGlDip~~~--------lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivlv~~~~ 836 (1931)
|.|||++|+||.||.--. +||.-..|.|..-..|.+||+||.|.. +.+++.-++
T Consensus 85 VtIATNmAGRGtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~~~~sleD 148 (175)
T d1tf5a4 85 VTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 148 (175)
T ss_dssp EEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred eeehhhHHHcCCCccchHHHHhCCCcEEEEeccCcchhHHHHHhcchhhhCCCcccEEEEEcCH
Confidence 999999999999986421 699999999999999999999999877 555665444
|
| >d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-specific editase 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.24 E-value=1.1e-06 Score=78.20 Aligned_cols=61 Identities=30% Similarity=0.402 Sum_probs=47.9
Q ss_pred CCCChHHHHHHHHhhcCCceeEEecc-C----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 000174 1764 PMHPVRELQERCQQQAEGLEYKASRS-G----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKE 1829 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~~~y~~~~~-g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1829 (1931)
++||+.+|+|+ ...++|++..+ | +.|+|.|.|+|..+ +|.|.|||+||+.||+.||+.|..
T Consensus 6 pK~~l~~L~e~----~~~~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~g~G~SKK~Aeq~AA~~aL~~l~~ 71 (73)
T d2b7ta1 6 PKNALMQLNEI----KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQ 71 (73)
T ss_dssp SHHHHHHHHHH----CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHhc----CCCCEEEEEEeeCCCCCceEEEEEEECCEEE-EcCCCcHHHHHHHHHHHHHHHHhh
Confidence 34555555554 24468986543 4 47999999999986 999999999999999999999864
|
| >d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Spermatid perinuclear RNA-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=1.2e-06 Score=80.02 Aligned_cols=62 Identities=31% Similarity=0.372 Sum_probs=51.4
Q ss_pred CCCChHHHHHHHHhhcCCceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhh
Q 000174 1764 PMHPVRELQERCQQQAEGLEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEK 1830 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 1830 (1931)
.+||+.+|+|+. ..++|++.. .| +.|+|.|.|+|..+ .|.|.|||+||+.||+.||+.|.-.
T Consensus 11 ~~n~~~~L~e~~----~~~~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~g~G~SKK~Aeq~AA~~aL~~L~~~ 77 (84)
T d2dmya1 11 LMNALMRLNQIR----PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGYP 77 (84)
T ss_dssp CTHHHHHHHHHS----CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTCC
T ss_pred ccCHHHHHHHhC----CCCeEEEEEeeCCCCCCeEEEEEEECCEEE-EcCCCCHHHHHHHHHHHHHHHhCCC
Confidence 578999999873 346888643 34 47999999999875 8999999999999999999999643
|
| >d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: PAZ domain family: PAZ domain domain: Argonaute homologue PF0537 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.88 E-value=4.1e-07 Score=102.07 Aligned_cols=94 Identities=15% Similarity=0.054 Sum_probs=64.9
Q ss_pred CccccCCcEEEcccCCCeEEEE---eeccCCCCCCCCCCCCCCCCCCccccHHHHHHhhcCccccCCCCceEEeeccccc
Q 000174 1231 NAGDLEGRIVTAAHSGKRFYVE---SIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYC 1307 (1931)
Q Consensus 1231 ~~~~l~~~vv~~~~~~~~y~v~---~v~~dltp~s~fp~~~g~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL~~~~~~~~ 1307 (1931)
+...+.|.+|+|.||+++|.+. ++.++.||.+.|..+ .-.+|.+||+++|++ +.+||||..+.-.+.
T Consensus 183 ~~k~lvG~iVLT~YNNkTy~~di~~dvd~~~~p~~t~~~~-------~~~s~ieYYk~~Yni---D~~QPlLvs~~k~~~ 252 (322)
T d1u04a1 183 SPLKTVYKPCFEEYTKKPKLDHNQEIVKYWYNYHIERYWN-------TPEAKLEFYRKFGQV---DLKQPAILAKFASKI 252 (322)
T ss_dssp STTCCEEEECBCTTSSCBCEECCHHHHHHHHHHHHHHHCC-------SHHHHHHHHHHHCSC---CTTSCEEEEEESCC-
T ss_pred hhhheeceEEEeccCCcceecchhhcCCcccCccceeccC-------CcccHHHHHHHhcCC---CCCCceEEEeccccc
Confidence 4567899999999999986544 466777776555322 235899999999997 568999997532210
Q ss_pred cccCCCccccccccccccccccccceEEEcCCcccccccCChHHHHH
Q 000174 1308 KNLLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHPLPGSLVRG 1354 (1931)
Q Consensus 1308 ~n~l~~~~~~~~~~~~~~~~~~~k~~~~~L~Pelc~v~~lp~~~~~~ 1354 (1931)
. .... ..++|+||+|.+.+++..+-.-
T Consensus 253 ----------~--------~~~~--~~i~LiPELc~lTGltD~mR~d 279 (322)
T d1u04a1 253 ----------K--------KNKN--YKIYLLPQLVVPTYNAEQLESD 279 (322)
T ss_dssp ----------------------C--CCEEECTTTEEEEEEGGGC---
T ss_pred ----------C--------CCCc--eEEEEchHhhhhcCCcHHHHHH
Confidence 0 0011 2479999999999999887443
|
| >d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: PAZ domain family: PAZ domain domain: Eukaryotic translation initiation factor 2C 1, EIF2C1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=2.2e-05 Score=77.70 Aligned_cols=85 Identities=26% Similarity=0.491 Sum_probs=63.5
Q ss_pred ccCCcEEEcccCC---CeEEEEeeccCCCCCCCCCCCCCCCCCCccccHHHHHHhhcCccccCCCCceEEeecccccccc
Q 000174 1234 DLEGRIVTAAHSG---KRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYCKNL 1310 (1931)
Q Consensus 1234 ~l~~~vv~~~~~~---~~y~v~~v~~dltp~s~fp~~~g~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL~~~~~~~~~n~ 1310 (1931)
.|.|..|.+.|.+ +.|.|.++.++.++.+.|+.... .+.....|+++||+++|++.+.++++|+|.+..
T Consensus 36 ~Lkgl~V~~~h~~~~~r~y~I~gl~~~~~~~~~F~~~~~-~g~~~~iTV~~YFk~~Y~~~L~~p~lP~l~vg~------- 107 (126)
T d1si2a_ 36 EIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLE-SGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQ------- 107 (126)
T ss_dssp HHTTCEEEECTTTTCCCEEEEEEEEEEETTTCEEECC-------CEEEHHHHHHHTSCCCCSCTTSEEEEESC-------
T ss_pred HhCCeEEEEecCCCCcceEEEeeccCCCCCCceeeeccC-CCCceEEEHHHHHHHHcCcccCCCCCCEEEeCC-------
Confidence 4678888888853 68999999988888888854321 011246799999999999999999999999631
Q ss_pred CCCccccccccccccccccccceEEEcCCccccccc
Q 000174 1311 LSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHP 1346 (1931)
Q Consensus 1311 l~~~~~~~~~~~~~~~~~~~k~~~~~L~Pelc~v~~ 1346 (1931)
..+ .++||+|+|.+.+
T Consensus 108 ------------------~~k--~~~lP~Elc~I~~ 123 (126)
T d1si2a_ 108 ------------------EQK--HTYLPLEVCNIVA 123 (126)
T ss_dssp ------------------GGG--CEEEEGGGEEECC
T ss_pred ------------------CCC--CeEEccEeeEecC
Confidence 011 2689999999875
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=97.56 E-value=0.00025 Score=77.46 Aligned_cols=153 Identities=20% Similarity=0.207 Sum_probs=100.8
Q ss_pred CCCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHH---HHHHHHHHcCC
Q 000174 301 EEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQ---QAEVIREQTGY 377 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q---~~~~l~~~~~l 377 (1931)
-..+++.|.-+--. +.+.-|+.+.||=|||+++.+|+.-... .++.|=||+..--|+.- |..-+-+++|+
T Consensus 78 G~RhyDVQLiGgi~-L~~G~iaem~TGEGKTL~a~l~a~l~al------~g~~vhvvTvNdyLA~RDae~m~~iy~~lGl 150 (273)
T d1tf5a3 78 GMFPFKVQLMGGVA-LHDGNIAEMKTGEGKTLTSTLPVYLNAL------TGKGVHVVTVNEYLASRDAEQMGKIFEFLGL 150 (273)
T ss_dssp SCCCCHHHHHHHHH-HHTTSEEECCTTSCHHHHHHHHHHHHHT------TSSCEEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred ceEEehhHHHHHHH-HHhhhheeecCCCcchhHHHHHHHHHHh------cCCCceEEecCccccchhhhHHhHHHHHcCC
Confidence 45677777665443 3466799999999999999998753332 23457788887788854 66666677899
Q ss_pred cEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHH-HHHHhccc------ccccceeEEEEeCCCcccCCCc-------
Q 000174 378 VVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQIL-LNILRHSI------IKMEAINLLILDECHHAVKKHP------- 443 (1931)
Q Consensus 378 ~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L-~d~L~~~~------l~l~~i~lLV~DEaH~~~~~~~------- 443 (1931)
.|+++..++.... ++..-.++|+.+|..-| +|.|+... .....+.+.|+||+|.++=+..
T Consensus 151 svg~~~~~~~~~~------r~~~Y~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsiliDeartpliis 224 (273)
T d1tf5a3 151 TVGLNLNSMSKDE------KREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIIS 224 (273)
T ss_dssp CEEECCTTSCHHH------HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEE
T ss_pred CccccccccCHHH------HHHHhhCCceecchhhhhhhhcchhhhcChhhhccCCCCEEEEEcchhhhhhccCCceEec
Confidence 9999887765322 11223789999998665 45554422 2356688999999998773210
Q ss_pred -----HHHH-HHHHHhhcCCCCCcEEEEEeecCC
Q 000174 444 -----YSLV-MSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 444 -----~~~i-m~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
.+.+ .+.|+.. -+++-|||+|-.
T Consensus 225 g~~~~~a~it~q~~f~~-----y~~l~gmtgta~ 253 (273)
T d1tf5a3 225 GQSMTLATITFQNYFRM-----YEKLAGMTGTAK 253 (273)
T ss_dssp EEEEEEEEEEHHHHHTT-----SSEEEEEESCCG
T ss_pred cCccchhhhhHHHHHHH-----HHHHhCCccccH
Confidence 0001 2233332 267899999954
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.18 E-value=0.0019 Score=67.25 Aligned_cols=121 Identities=20% Similarity=0.196 Sum_probs=93.9
Q ss_pred CHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCce
Q 000174 703 TPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVT 782 (1931)
Q Consensus 703 s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~ 782 (1931)
..|...+++.+... +..+..+||.+.++...+.|..+|.+ .+++..++.. . +.+|+.-+=. +.|...
T Consensus 17 ~~K~~Avv~ei~~~-h~~GqPVLVGT~SVe~SE~lS~lL~~----~gi~h~vLNA-----K--~herEAeIIA-qAG~~G 83 (219)
T d1nkta4 17 EAKYIAVVDDVAER-YAKGQPVLIGTTSVERSEYLSRQFTK----RRIPHNVLNA-----K--YHEQEATIIA-VAGRRG 83 (219)
T ss_dssp HHHHHHHHHHHHHH-HHTTCCEEEEESCHHHHHHHHHHHHH----TTCCCEEECS-----S--CHHHHHHHHH-TTTSTT
T ss_pred HHHHHHHHHHHHHH-HhcCCCEEEeeCcHHHHHHHHHHHHH----hccchhccch-----h--hHHHHHHHHH-hcccCC
Confidence 46888888888776 45678899999999999999999998 6888888877 2 2344433322 455544
Q ss_pred -EEEEecccccCCCCCC----------------------------------------------------CCEEEEcCCCC
Q 000174 783 -LLVATSVAEEGLDIRQ----------------------------------------------------CNVVIRFDLAK 809 (1931)
Q Consensus 783 -vLVaTdVaeeGlDip~----------------------------------------------------~~lVI~fD~p~ 809 (1931)
|-|||++|+||-||-= ==+||--....
T Consensus 84 aVTIATNMAGRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIGTErHe 163 (219)
T d1nkta4 84 GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHE 163 (219)
T ss_dssp CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCS
T ss_pred cEEeeccccCCCCceeecCchhhhhHHHhhhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 9999999999999933 11689999999
Q ss_pred CHHHHHHhhccCCCCCCc--EEEEEecCC
Q 000174 810 TVLAYIQSRGRARKPGSD--YILMIERGN 836 (1931)
Q Consensus 810 s~~~yiQr~GRa~R~Gs~--~ivlv~~~~ 836 (1931)
|-.-.-|-+||+||.|.. ..+|+.-++
T Consensus 164 SrRIDnQLRGRsGRQGDPGsSrFflSLeD 192 (219)
T d1nkta4 164 SRRIDNQLRGRSGRQGDPGESRFYLSLGD 192 (219)
T ss_dssp SHHHHHHHHHTSSGGGCCEEEEEEEETTS
T ss_pred cccccccccccccccCCCccceeEEeccH
Confidence 999999999999999876 445555444
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=96.08 E-value=0.0051 Score=71.88 Aligned_cols=70 Identities=13% Similarity=0.103 Sum_probs=52.0
Q ss_pred CCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH
Q 000174 302 EQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE 373 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~ 373 (1931)
....+.|++|+..++. +-++|.++.|+|||.+....+..+.... ...+.++++++||-.-+....+.+..
T Consensus 147 ~~~~~~Q~~A~~~al~~~~~vI~G~pGTGKTt~i~~~l~~l~~~~--~~~~~~I~l~ApTgkAA~~L~e~~~~ 217 (359)
T d1w36d1 147 SDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA--DGERCRIRLAAPTGKAAARLTESLGK 217 (359)
T ss_dssp TTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTC--SSCCCCEEEEBSSHHHHHHHHHHHTH
T ss_pred cccccHHHHHHHHHHcCCeEEEEcCCCCCceehHHHHHHHHHHHH--hccCCeEEEecCcHHHHHHHHHHHHH
Confidence 3467899999999998 6679999999999988766555544322 23456799999998777666655543
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=95.99 E-value=0.0042 Score=71.12 Aligned_cols=70 Identities=13% Similarity=0.079 Sum_probs=55.0
Q ss_pred CCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000174 303 QARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT 375 (1931)
Q Consensus 303 ~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~ 375 (1931)
+|+|-|.+++.. ...+++|.++.|||||.+.+.-+.+++... ..+..+++||++|+.++......+....
T Consensus 1 ~L~~eQ~~av~~-~~~~~lI~g~aGTGKTt~l~~rv~~ll~~~--~~~~~~ILvlt~tn~a~~~i~~~~~~~~ 70 (306)
T d1uaaa1 1 RLNPGQQQAVEF-VTGPCLVLAGAGSGKTRVITNKIAHLIRGC--GYQARHIAAVTFTNKAAREMKERVGQTL 70 (306)
T ss_dssp CCCHHHHHHHHC-CSSEEEECCCTTSCHHHHHHHHHHHHHHHH--CCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHhC-CCCCEEEEeeCCccHHHHHHHHHHHHHHhc--CCChhHEEEEeCcHHHHHHHHHHHHHhc
Confidence 578999999965 346799999999999999888777776543 2233569999999999988777776643
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=94.50 E-value=0.028 Score=64.42 Aligned_cols=70 Identities=10% Similarity=0.067 Sum_probs=55.0
Q ss_pred CCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHH
Q 000174 302 EQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQ 374 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~ 374 (1931)
..|++-|.+++.. ....++|.++.|||||.+.+--+.+++... .-...+++++++|+..+......+...
T Consensus 10 ~~L~~eQ~~~v~~-~~g~~lV~g~aGSGKTt~l~~ri~~ll~~~--~~~p~~il~lt~t~~aa~~~~~~~~~~ 79 (318)
T d1pjra1 10 AHLNKEQQEAVRT-TEGPLLIMAGAGSGKTRVLTHRIAYLMAEK--HVAPWNILAITFTNKAAREMRERVQSL 79 (318)
T ss_dssp TTSCHHHHHHHHC-CSSCEEEEECTTSCHHHHHHHHHHHHHHTT--CCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHhC-CCCCEEEEecCCccHHHHHHHHHHHHHHcC--CCCHHHeEeEeccHHHHHHHHHHHHhh
Confidence 4589999999974 347899999999999999888777666532 122346999999999999888887764
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.39 E-value=0.065 Score=57.15 Aligned_cols=40 Identities=15% Similarity=0.152 Sum_probs=32.4
Q ss_pred CCcHHHHHHHHHHhc-------cC-EEEEeCCCchHHHHHHHHHHHHH
Q 000174 303 QARPYQLDVLEQAKK-------KN-TIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 303 ~~~~~Q~eai~~~l~-------~n-~Il~~~TGsGKTliall~i~~~l 342 (1931)
..+|||..+++.+.+ .+ .|+++|.|+|||..+...+..++
T Consensus 2 ~~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 2 RWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp CCCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCcccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhcc
Confidence 467899998888754 22 78999999999999988887665
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=93.85 E-value=0.18 Score=52.79 Aligned_cols=83 Identities=18% Similarity=0.179 Sum_probs=64.4
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHHc-CCcEEEEeCCCcccccchHHHHhhc-CCccEEEEcHHHHHHHHhcccccccce
Q 000174 350 KKMLAVFLVPKVPLVYQQAEVIREQT-GYVVGHYCGEMGQDFWDAQRWQREF-DTKQVLVMTAQILLNILRHSIIKMEAI 427 (1931)
Q Consensus 350 ~~~~vL~LvPT~~Lv~Q~~~~l~~~~-~l~v~~~~G~~~~~~~~~~~w~~~~-~~~~IlV~Tpq~L~d~L~~~~l~l~~i 427 (1931)
.+.+|.||||.++-.....+.+++.+ ++++.++||.|+.+.... ...+.. ...+|+|||.- ++.| +...+.
T Consensus 30 rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~-im~~F~~g~~~ILv~Ttv-----IEvG-iDvpnA 102 (211)
T d2eyqa5 30 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELER-VMNDFHHQRFNVLVCTTI-----IETG-IDIPTA 102 (211)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHH-HHHHHHTTSCCEEEESST-----TGGG-SCCTTE
T ss_pred cCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHH-HHHHHHcCCcceEEEehh-----hhhc-cCCCCC
Confidence 56789999999999999999998876 789999999997654222 222222 47899999964 3333 688999
Q ss_pred eEEEEeCCCccc
Q 000174 428 NLLILDECHHAV 439 (1931)
Q Consensus 428 ~lLV~DEaH~~~ 439 (1931)
+++|+..|+++.
T Consensus 103 ~~iiI~~a~rfG 114 (211)
T d2eyqa5 103 NTIIIERADHFG 114 (211)
T ss_dssp EEEEETTTTSSC
T ss_pred cEEEEecchhcc
Confidence 999999999983
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=93.60 E-value=0.07 Score=62.67 Aligned_cols=72 Identities=15% Similarity=0.094 Sum_probs=56.1
Q ss_pred CCCCcHHHHHHHHHHhc------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHH
Q 000174 301 EEQARPYQLDVLEQAKK------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQ 374 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~ 374 (1931)
.+.|.--|=+||..+.+ +..+|.+-||||||++...++.+. ++++|||+|+..+|.|+++.++.+
T Consensus 9 ~~~p~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA~l~~~~---------~rp~LVVt~n~~~A~qL~~dL~~~ 79 (413)
T d1t5la1 9 PYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQV---------NKPTLVIAHNKTLAGQLYSELKEF 79 (413)
T ss_dssp SSCCCTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHHHHHHHH---------TCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcEEEeCCCCcHHHHHHHHHHHHh---------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 35677778777777654 347899999999998877665542 356999999999999999999998
Q ss_pred cCCcEEE
Q 000174 375 TGYVVGH 381 (1931)
Q Consensus 375 ~~l~v~~ 381 (1931)
++-....
T Consensus 80 l~~~~v~ 86 (413)
T d1t5la1 80 FPHNAVE 86 (413)
T ss_dssp CTTSEEE
T ss_pred cCCCcee
Confidence 8654433
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.33 E-value=0.055 Score=59.57 Aligned_cols=112 Identities=16% Similarity=0.167 Sum_probs=79.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCC
Q 000174 701 KVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGR 780 (1931)
Q Consensus 701 ~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~ 780 (1931)
..|.|-..-+..+... -..+.++++-+++..-|...++.+++.-.-.++.+..+|| +++.++|.+++.+.++|+
T Consensus 113 vGSGKT~Va~~a~~~~-~~~g~q~~~m~Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~-----~~~~~~r~~~~~~~~~g~ 186 (264)
T d1gm5a3 113 VGSGKTVVAQLAILDN-YEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIG-----ATTPSEKEKIKSGLRNGQ 186 (264)
T ss_dssp SSSSHHHHHHHHHHHH-HHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCS-----SSCHHHHHHHHHHHHSSC
T ss_pred ccccccHHHHHHHHHH-HhcccceeEEeehHhhhHHHHHHHHHhhhhccccceeecc-----ccchHHHHHHHHHHHCCC
Confidence 3466765555444332 2346899999999988888887776532113678999999 999999999999999999
Q ss_pred ceEEEEe-cccccCCCCCCCCEEEEcCCCCCHHHHHHhhcc
Q 000174 781 VTLLVAT-SVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGR 820 (1931)
Q Consensus 781 ~~vLVaT-dVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GR 820 (1931)
++|+|+| +++.+.+.+.+..+||.=.-. --.|-||-+-
T Consensus 187 ~~iiIGThsl~~~~~~f~~LglviiDEqH--~fgv~Qr~~l 225 (264)
T d1gm5a3 187 IDVVIGTHALIQEDVHFKNLGLVIIDEQH--RFGVKQREAL 225 (264)
T ss_dssp CCEEEECTTHHHHCCCCSCCCEEEEESCC--CC-----CCC
T ss_pred CCEEEeehHHhcCCCCccccceeeecccc--ccchhhHHHH
Confidence 9999999 566778888899888853321 1256676544
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=92.91 E-value=0.1 Score=56.15 Aligned_cols=98 Identities=10% Similarity=0.106 Sum_probs=78.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCC
Q 000174 701 KVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGR 780 (1931)
Q Consensus 701 ~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~ 780 (1931)
..|.|-..-+..+... -..+.++++-+++..-+..+++.+++.-..-++.+..+|| .++..+|.++++...+|+
T Consensus 85 vGsGKT~V~~~a~~~~-~~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~-----~~~~~~~~~~~~~~~~g~ 158 (233)
T d2eyqa3 85 VGFGKTEVAMRAAFLA-VDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISR-----FRSAKEQTQILAEVAEGK 158 (233)
T ss_dssp CCTTTHHHHHHHHHHH-HTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEEST-----TSCHHHHHHHHHHHHTTC
T ss_pred CCCCcHHHHHHHHHHH-HHcCCceEEEccHHHhHHHHHHHHHHHHhhCCCEEEeccC-----cccchhHHHHHHHHhCCC
Confidence 4467777666666554 2467899999999999999999888642224578899999 899999999999999999
Q ss_pred ceEEEEec-ccccCCCCCCCCEEEE
Q 000174 781 VTLLVATS-VAEEGLDIRQCNVVIR 804 (1931)
Q Consensus 781 ~~vLVaTd-VaeeGlDip~~~lVI~ 804 (1931)
.+|+|.|- ++...+.+++..+||.
T Consensus 159 ~~iviGths~l~~~~~f~~LgLiIi 183 (233)
T d2eyqa3 159 IDILIGTHKLLQSDVKFKDLGLLIV 183 (233)
T ss_dssp CSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred CCEEEeehhhhccCCccccccceee
Confidence 99999996 5555788888888775
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.84 E-value=0.24 Score=52.78 Aligned_cols=87 Identities=15% Similarity=0.203 Sum_probs=51.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhh
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQRE 399 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~ 399 (1931)
+++++++|+|||........+...+ +..+ +..+...+..+....+...
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~------------------------- 86 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAKKR------GYRV-IYSSADDFAQAMVEHLKKG------------------------- 86 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHT------TCCE-EEEEHHHHHHHHHHHHHHT-------------------------
T ss_pred EEEECCCCCcHHHHHHHHHHHhccC------ccce-EEechHHHHHHHHHHHHcc-------------------------
Confidence 8999999999998877776665442 2233 3444444544444443320
Q ss_pred cCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhh
Q 000174 400 FDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHT 454 (1931)
Q Consensus 400 ~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~ 454 (1931)
..+.+.+. +...++||+|+.|.+.++......+-.++..
T Consensus 87 ---------~~~~~~~~-------~~~~dll~iDDi~~i~~~~~~~~~lf~lin~ 125 (213)
T d1l8qa2 87 ---------TINEFRNM-------YKSVDLLLLDDVQFLSGKERTQIEFFHIFNT 125 (213)
T ss_dssp ---------CHHHHHHH-------HHTCSEEEEECGGGGTTCHHHHHHHHHHHHH
T ss_pred ---------chhhHHHH-------HhhccchhhhhhhhhcCchHHHHHHHHHHHH
Confidence 11112221 4468999999999998754444444444443
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=91.19 E-value=0.48 Score=49.93 Aligned_cols=124 Identities=17% Similarity=0.139 Sum_probs=69.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC-hhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHh
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK-VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQR 398 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT-~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~ 398 (1931)
++++++||+|||-...-++.++.. . +++..||-+-| |.=+..|.+.+.+.+++.+.........
T Consensus 12 i~lvGptGvGKTTTiAKLA~~~~~----~-g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~---------- 76 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGKLARQFEQ----Q-GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS---------- 76 (211)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHT----T-TCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCH----------
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH----C-CCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCH----------
Confidence 457999999999888877655432 2 23445555555 5556667777777778776544332210
Q ss_pred hcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCC----CCCcEEEEEeecCC
Q 000174 399 EFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSK----EKRPSVFGMTASPV 471 (1931)
Q Consensus 399 ~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~----~~~p~iLgLTATP~ 471 (1931)
...+.+.+.. ....+.++|++|=+=+.-.+......++.+...... ...-.+|-|+||-.
T Consensus 77 -----------~~~l~~~~~~--a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~ 140 (211)
T d2qy9a2 77 -----------ASVIFDAIQA--AKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG 140 (211)
T ss_dssp -----------HHHHHHHHHH--HHHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGT
T ss_pred -----------HHHHHHHHHH--HHHcCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccC
Confidence 1122222221 224567889999876654332333344444443321 12345677888743
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.96 E-value=0.47 Score=51.29 Aligned_cols=24 Identities=33% Similarity=0.306 Sum_probs=20.0
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
+|+++|.|+|||..+.+.+..+..
T Consensus 37 ~Ll~Gp~G~GKtt~a~~~~~~l~~ 60 (239)
T d1njfa_ 37 YLFSGTRGVGKTSIARLLAKGLNC 60 (239)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHC
T ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Confidence 789999999999988877766543
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=90.59 E-value=0.57 Score=49.26 Aligned_cols=122 Identities=15% Similarity=0.147 Sum_probs=70.2
Q ss_pred cCE-EEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC--ChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchH
Q 000174 318 KNT-IAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP--KVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQ 394 (1931)
Q Consensus 318 ~n~-Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP--T~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~ 394 (1931)
+++ +++++||+|||-...-++.++.. . +.++.+++- -|.=+.+|.+.+.+.+++.+.......... .
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~----~--g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~----~ 79 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYKG----K--GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPE----S 79 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHH----T--TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHH----H
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH----C--CCcEEEEecccccchHHHHHHHHHHhcCCccccccccchhh----H
Confidence 454 56999999999888877765543 2 234555553 466677788888887888776654332110 0
Q ss_pred HHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecC
Q 000174 395 RWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASP 470 (1931)
Q Consensus 395 ~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP 470 (1931)
. ..... ......+.++|++|=+=+...+......+..+...... ...+|.++||-
T Consensus 80 ~-----------------~~~~~--~~~~~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~--~~~llv~~a~~ 134 (207)
T d1ls1a2 80 I-----------------RRRVE--EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGP--DEVLLVLDAMT 134 (207)
T ss_dssp H-----------------HHHHH--HHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCC--SEEEEEEEGGG
T ss_pred H-----------------HHHHH--HHHhhccCcceeecccccchhhhhhHHHHHHHHhhcCC--ceEEEEecccc
Confidence 0 00000 01235567888888887765543444445555444322 24456666663
|
| >d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: PAZ domain family: PAZ domain domain: Argonaute 2 species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=90.45 E-value=0.11 Score=49.64 Aligned_cols=79 Identities=22% Similarity=0.317 Sum_probs=53.3
Q ss_pred ccCCcEEEcccC------CCeEEEEeeccCCCCCCCCCCCCCCCCCCccccHHHHHHhhcCccccCCCCceEEeeccccc
Q 000174 1234 DLEGRIVTAAHS------GKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYC 1307 (1931)
Q Consensus 1234 ~l~~~vv~~~~~------~~~y~v~~v~~dltp~s~fp~~~g~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL~~~~~~~~ 1307 (1931)
.|.|.-|...|- ++.|.|.++...-.-.-.|+. +| ...|-++||++ |++.+.+++.|+|.+..
T Consensus 36 ~LKGlkV~~th~~~~~~~~R~~~I~glt~~~a~~~~F~~-dg-----~~itV~~YF~~-~~~~Lk~p~lPcl~vG~---- 104 (123)
T d1t2sa_ 36 FLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEH-DG-----KKVTIASYFHS-RNYPLKFPQLHCLNVGS---- 104 (123)
T ss_dssp HHTTEEEEECCCTTTCCCCEEEEECEEEEEETTTCEEEE-TT-----EEEEHHHHHHH-TTCCCSCTTSEEEEEEC----
T ss_pred HhCCCEEEEecCCCCCCCCceEEEccCCCCchhcceecC-CC-----eEEEHHHHHHH-hCccccCCCCcEEEeCC----
Confidence 356666655441 267999988653222335653 33 56788999975 78999999999999631
Q ss_pred cccCCCccccccccccccccccccceEEEcCCccccccc
Q 000174 1308 KNLLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHP 1346 (1931)
Q Consensus 1308 ~n~l~~~~~~~~~~~~~~~~~~~k~~~~~L~Pelc~v~~ 1346 (1931)
..+ .++||.|+|.+.+
T Consensus 105 ---------------------~~k--~~ylPmElc~I~~ 120 (123)
T d1t2sa_ 105 ---------------------SIK--SILLPIELCSIEE 120 (123)
T ss_dssp ---------------------SSS--EEEECGGGEEECT
T ss_pred ---------------------CCC--CcEechhhEEecC
Confidence 011 3689999999865
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.38 E-value=0.27 Score=51.61 Aligned_cols=34 Identities=15% Similarity=0.061 Sum_probs=27.8
Q ss_pred HHHHHHHHhc----cCEEEEeCCCchHHHHHHHHHHHH
Q 000174 308 QLDVLEQAKK----KNTIAFLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 308 Q~eai~~~l~----~n~Il~~~TGsGKTliall~i~~~ 341 (1931)
|.+.+..+.+ .+.|+.++.|+|||-.+..++...
T Consensus 2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~~~i 39 (198)
T d2gnoa2 2 QLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYV 39 (198)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 7778888776 568999999999999988877543
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=90.20 E-value=0.58 Score=49.16 Aligned_cols=124 Identities=15% Similarity=0.058 Sum_probs=68.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC-hhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHh
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK-VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQR 398 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT-~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~ 398 (1931)
++++++||+|||-...-++.++.. . +++.+||-+-| |.=+.+|.+.+.+.+++.+.........
T Consensus 9 i~lvGptGvGKTTTiaKLA~~~~~----~-g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~---------- 73 (207)
T d1okkd2 9 VLVVGVNGVGKTTTIAKLGRYYQN----L-GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDP---------- 73 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHT----T-TCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCH----------
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH----C-CCcEEEEEeccccccchhhHhhcccccCceEEeccCCccH----------
Confidence 567999999999888877655432 2 23344444444 6666677777777777775543322111
Q ss_pred hcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhc----CCCCCcEEEEEeecCC
Q 000174 399 EFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTT----SKEKRPSVFGMTASPV 471 (1931)
Q Consensus 399 ~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~----~~~~~p~iLgLTATP~ 471 (1931)
...+.+.+.. ....+.++|++|=+=+...+......++.+.... +..+.-.+|-|+||-.
T Consensus 74 -----------~~~~~~~~~~--~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~ 137 (207)
T d1okkd2 74 -----------AALAYDAVQA--MKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG 137 (207)
T ss_dssp -----------HHHHHHHHHH--HHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBC
T ss_pred -----------HHHHHHHHHH--HHHCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccC
Confidence 0111111111 1234678888888776655433333344443322 1122345677888754
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.87 E-value=0.29 Score=53.22 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.1
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
.++|+++|.|+|||.++...+.++.
T Consensus 34 ~~lll~Gp~G~GKTt~~~~la~~l~ 58 (252)
T d1sxje2 34 PHLLLYGPNGTGKKTRCMALLESIF 58 (252)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhc
Confidence 4689999999999999888877653
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=87.47 E-value=0.82 Score=49.95 Aligned_cols=26 Identities=38% Similarity=0.400 Sum_probs=21.8
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
.|+|++++.|.|||.+.--+++.+..
T Consensus 40 ~n~lLVG~~GvGKTalv~~la~ri~~ 65 (268)
T d1r6bx2 40 NNPLLVGESGVGKTAIAEGLAWRIVQ 65 (268)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEECCCCCcHHHHHHHHHHHHHh
Confidence 78999999999999887777666554
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.98 E-value=0.92 Score=48.48 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=25.3
Q ss_pred HHHHHHHhc----cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 309 LDVLEQAKK----KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 309 ~eai~~~l~----~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
.+.+..+++ .++|+.+|+|+|||..+-.++.++.
T Consensus 21 ~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l~ 58 (237)
T d1sxjd2 21 VTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 58 (237)
T ss_dssp HHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEECCCCCChHHHHHHHHHHHc
Confidence 344555544 5689999999999998888777654
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.48 E-value=0.46 Score=50.76 Aligned_cols=25 Identities=24% Similarity=0.149 Sum_probs=21.3
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
.++|+.+|.|+|||.++-+++.++.
T Consensus 37 ~~~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 37 PHMIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCchhhHHHHHHHHh
Confidence 4689999999999999888877654
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=86.02 E-value=2.1 Score=44.91 Aligned_cols=57 Identities=18% Similarity=0.160 Sum_probs=37.8
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC-hhHHHHHHHHHHHHcCCcEEE
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK-VPLVYQQAEVIREQTGYVVGH 381 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT-~~Lv~Q~~~~l~~~~~l~v~~ 381 (1931)
+++++|||+|||-...-++.++.. . +++..||-+.| |.=+..|.+.+.+.+++.+..
T Consensus 14 i~lvGptGvGKTTTiAKLAa~~~~----~-~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~ 71 (213)
T d1vmaa2 14 IMVVGVNGTGKTTSCGKLAKMFVD----E-GKSVVLAAADTFRAAAIEQLKIWGERVGATVIS 71 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH----T-TCCEEEEEECTTCHHHHHHHHHHHHHHTCEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH----C-CCceEEEeecccccchhHHHHHHhhhcCccccc
Confidence 467999999999888877766543 2 23445555554 455556666776667776554
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.83 E-value=1.1 Score=47.70 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=20.2
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~ 341 (1931)
.++|+++|+|+|||..+-+++.++
T Consensus 36 ~~lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 36 PHLLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHHHh
Confidence 468999999999998888777654
|
| >d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=85.68 E-value=0.84 Score=53.22 Aligned_cols=70 Identities=21% Similarity=0.152 Sum_probs=53.0
Q ss_pred CCcHHHHHHHHHHhc-----c-CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcC
Q 000174 303 QARPYQLDVLEQAKK-----K-NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG 376 (1931)
Q Consensus 303 ~~~~~Q~eai~~~l~-----~-n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~ 376 (1931)
.|+.-|-++|..+++ . ...|.+-+||+||++...++... ++++|||+|+...+.|+++.++.+++
T Consensus 8 ~p~~dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~~~A~l~~~~---------~rp~LvVt~~~~~A~~l~~dL~~~l~ 78 (408)
T d1c4oa1 8 SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL---------GRPALVLAPNKILAAQLAAEFRELFP 78 (408)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH---------TCCEEEEESSHHHHHHHHHHHHHHCT
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHHHHh---------CCCEEEEeCCHHHHHHHHHHHHHhcC
Confidence 566778777777654 2 35888999999998776654422 34699999999999999999999886
Q ss_pred CcEEE
Q 000174 377 YVVGH 381 (1931)
Q Consensus 377 l~v~~ 381 (1931)
-....
T Consensus 79 ~~~v~ 83 (408)
T d1c4oa1 79 ENAVE 83 (408)
T ss_dssp TSEEE
T ss_pred cccee
Confidence 54443
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=83.32 E-value=1.1 Score=48.59 Aligned_cols=36 Identities=25% Similarity=0.201 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHhc----------cCEEEEeCCCchHHHHHHHHHHH
Q 000174 305 RPYQLDVLEQAKK----------KNTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 305 ~~~Q~eai~~~l~----------~n~Il~~~TGsGKTliall~i~~ 340 (1931)
|+.|.+.+..++. .++++.+|+|+|||.++-.++.+
T Consensus 21 Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~ 66 (276)
T d1fnna2 21 REQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL 66 (276)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 4566555555442 46899999999999887665443
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=83.13 E-value=2.1 Score=44.03 Aligned_cols=117 Identities=17% Similarity=0.075 Sum_probs=66.2
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhh-hcCCCcEEEEEeCChhHH------HHHHHHHHHHc------CCcEEEEeC
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQ-RQNKKMLAVFLVPKVPLV------YQQAEVIREQT------GYVVGHYCG 384 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~-~~~~~~~vL~LvPT~~Lv------~Q~~~~l~~~~------~l~v~~~~G 384 (1931)
.|+|+.++.|.|||.+.--+++.+..... ..-.+.+ ++-+....|+ -||.+.++..+ .-++.++..
T Consensus 44 ~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~-i~~ld~~~LiAg~~~rG~~E~rl~~il~e~~~~~~~iILfID 122 (195)
T d1jbka_ 44 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRR-VLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFID 122 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCE-EEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEE
T ss_pred CCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCce-EEEeeHHHHhccCCccHHHHHHHHHHHHHHhcCCCcEEEEcc
Confidence 68999999999999888777776654211 1112344 5555545555 36777665433 123444321
Q ss_pred CC---------cccccchHHHHhhc--CCcc-EEEEcHHHHHHHHhcccccccceeEEEEeCC
Q 000174 385 EM---------GQDFWDAQRWQREF--DTKQ-VLVMTAQILLNILRHSIIKMEAINLLILDEC 435 (1931)
Q Consensus 385 ~~---------~~~~~~~~~w~~~~--~~~~-IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEa 435 (1931)
+. ....--.+.....+ .... |.-+||+-+...++...--...+..|.++|-
T Consensus 123 eih~l~~~g~~~g~~d~~~~Lkp~L~rg~l~~IgatT~eey~~~~e~d~aL~rrF~~I~V~Ep 185 (195)
T d1jbka_ 123 ELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEP 185 (195)
T ss_dssp TGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCC
T ss_pred hHHHHhcCCCCCCcccHHHHHHHHHhCCCceEEecCCHHHHHHHHHcCHHHHhcCCEeecCCC
Confidence 11 00000112222222 2333 5568899988877766555678888888885
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=83.03 E-value=2 Score=49.42 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=21.0
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
.|.|+.++.|.|||.+.--+++.+..
T Consensus 44 ~n~llvG~~GvGKtaiv~~la~~i~~ 69 (387)
T d1qvra2 44 NNPVLIGEPGVGKTAIVEGLAQRIVK 69 (387)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEECCCCCCHHHHHHHHHHHHHh
Confidence 78999999999999887666655544
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=81.81 E-value=1.6 Score=44.18 Aligned_cols=83 Identities=13% Similarity=0.120 Sum_probs=60.5
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeE
Q 000174 350 KKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINL 429 (1931)
Q Consensus 350 ~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~l 429 (1931)
++.++||.|+|+.-+...++.|.+ .|+++..+||++.........-+-.....+|||+|- .+..| +...++++
T Consensus 30 ~g~r~lvfc~t~~~~~~l~~~L~~-~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~-----v~~~G-iDip~V~~ 102 (174)
T d1c4oa2 30 RGERTLVTVLTVRMAEELTSFLVE-HGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LLREG-LDIPEVSL 102 (174)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHH-TTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CCCTT-CCCTTEEE
T ss_pred cCCcEEEEEcchhHHHHHHHHHHh-cCCceEEEecccchHHHHHHHHHHHCCCeEEEEeee-----eeeee-ccCCCCcE
Confidence 356899999999999988888887 599999999998764422211111124789999994 34444 67899999
Q ss_pred EEEeCCCccc
Q 000174 430 LILDECHHAV 439 (1931)
Q Consensus 430 LV~DEaH~~~ 439 (1931)
||+=.++...
T Consensus 103 Vi~~~~~~~~ 112 (174)
T d1c4oa2 103 VAILDADKEG 112 (174)
T ss_dssp EEETTTTSCS
T ss_pred EEEecccccc
Confidence 9986666543
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=80.77 E-value=3.7 Score=42.83 Aligned_cols=57 Identities=18% Similarity=0.070 Sum_probs=32.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC-hhHHHHHHHHHHHHcCCcEEE
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK-VPLVYQQAEVIREQTGYVVGH 381 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT-~~Lv~Q~~~~l~~~~~l~v~~ 381 (1931)
+++++|||+|||-...-++.++.. . +.+.+||-+-| |.=+..|.+.+.+.+++.+..
T Consensus 15 i~lvGptGvGKTTTiAKLA~~~~~----~-g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~ 72 (211)
T d1j8yf2 15 IMLVGVQGTGKATTAGKLAYFYKK----K-GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYG 72 (211)
T ss_dssp EEEECSCCC----HHHHHHHHHHH----T-TCCEEEEECCCSSHHHHHHHHHHHHHHTCCEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH----C-CCceEEEEeeccccchhHHHHHhccccCcceee
Confidence 456899999999888777755432 2 23334444443 445555666677777777654
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=80.66 E-value=3.2 Score=42.23 Aligned_cols=81 Identities=12% Similarity=0.132 Sum_probs=59.9
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEE
Q 000174 351 KMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLL 430 (1931)
Q Consensus 351 ~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lL 430 (1931)
+.++||.|+++.-+...+..++. .|+++..+||++...........-.-...+|||||- .+.+| +.+.++++|
T Consensus 31 ~~~~iif~~~~~~~~~~~~~l~~-~g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTd-----v~~rG-iDip~v~~V 103 (181)
T d1t5la2 31 NERTLVTTLTKKMAEDLTDYLKE-AGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLREG-LDIPEVSLV 103 (181)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHT-TTCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEESC-----CCSSS-CCCTTEEEE
T ss_pred CCeEEEEeehhhhhHHHHHHHHh-CCcceeEecCCccHHHHHHHHHHHHCCCCCEEEehh-----HHHcc-CCCCCCCEE
Confidence 45799999999998877777775 599999999999865422221111124899999993 33444 789999999
Q ss_pred EEeCCCcc
Q 000174 431 ILDECHHA 438 (1931)
Q Consensus 431 V~DEaH~~ 438 (1931)
|.-.+.+.
T Consensus 104 I~~d~p~~ 111 (181)
T d1t5la2 104 AILDADKE 111 (181)
T ss_dssp EETTTTSC
T ss_pred EEecCCcc
Confidence 99888764
|