Citrus Sinensis ID: 000176
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1924 | 2.2.26 [Sep-21-2011] | |||||||
| Q14690 | 1871 | Protein RRP5 homolog OS=H | yes | no | 0.914 | 0.940 | 0.291 | 0.0 | |
| O74835 | 1690 | rRNA biogenesis protein r | yes | no | 0.621 | 0.707 | 0.281 | 1e-121 | |
| Q6NS46 | 1862 | Protein RRP5 homolog OS=M | yes | no | 0.680 | 0.703 | 0.273 | 1e-118 | |
| A7MB10 | 1874 | Protein RRP5 homolog OS=B | yes | no | 0.676 | 0.694 | 0.278 | 1e-118 | |
| Q05022 | 1729 | rRNA biogenesis protein R | yes | no | 0.583 | 0.649 | 0.289 | 1e-118 | |
| O06147 | 481 | 30S ribosomal protein S1 | yes | no | 0.181 | 0.727 | 0.243 | 2e-16 | |
| O84100 | 569 | 30S ribosomal protein S1 | yes | no | 0.175 | 0.594 | 0.254 | 5e-16 | |
| P46836 | 481 | 30S ribosomal protein S1 | yes | no | 0.181 | 0.727 | 0.240 | 8e-16 | |
| Q9Z8M3 | 580 | 30S ribosomal protein S1 | yes | no | 0.170 | 0.565 | 0.253 | 4e-15 | |
| O06000 | 382 | 30S ribosomal protein S1 | yes | no | 0.179 | 0.903 | 0.256 | 7e-15 |
| >sp|Q14690|RRP5_HUMAN Protein RRP5 homolog OS=Homo sapiens GN=PDCD11 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/1965 (29%), Positives = 949/1965 (48%), Gaps = 205/1965 (10%)
Query: 54 FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
FPRGG + + E+ + E D F+ + E G K+ K +K KT++ E +
Sbjct: 8 FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63
Query: 110 LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
S K R +I +++++ GM++ G V EVNE +LVI LP GL+G + + D
Sbjct: 64 ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117
Query: 169 PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
NE E L LP +F G LV C+V L + GK+ + LSL +
Sbjct: 118 AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175
Query: 222 YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
+ LS E ++ GM+LT V S+EDHGY++ G+ FLP E N G +K
Sbjct: 176 NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235
Query: 277 GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
G L +V + VV LS VS + + + +++ L+PG++V +VQ + G
Sbjct: 236 GQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFG 295
Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
+ L+FLT+FTG VD HL T + N + V A IL V P +R V L+L P L
Sbjct: 296 LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFL 350
Query: 397 HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
P + + +G + D V + G + + AY +S +++ +
Sbjct: 351 QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407
Query: 454 EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
+ +K G+ + RI+ + ++ LA L+ S E + D++PG VVKG V+ + S+G
Sbjct: 408 PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYG 467
Query: 514 AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
+V+ ++ L P H+++ + P KK+ +G E+ RVL ++K++ +T KKTL++
Sbjct: 468 MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIE 527
Query: 572 SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
SKL +++ YA+A L THG+I +++ +GC V+FYN VQG P+ EL + +P +++
Sbjct: 528 SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587
Query: 632 VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
GQVVK +++ P+ R+ LSF + +P S+ + +G LV V T
Sbjct: 588 TGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 647
Query: 682 PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
+ + V V+ + +PT HL+DH+ + ++ ++ G ++L L +LL
Sbjct: 648 KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCR 706
Query: 742 KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
K +L+++ + Q P + S IHP ++ G+V +I + G F++F L+G AP++ D
Sbjct: 707 KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 766
Query: 800 ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS- 858
S + GQ+V + + +V+ E R+ LSL+ S C D + + LL + + LQ
Sbjct: 767 TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGV 825
Query: 859 ----SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGAT 913
S + ++ + G ++ V E D VV S D+ + + AG
Sbjct: 826 RSLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQE 885
Query: 914 VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
VESG + IL+V + V +SL + NR+A+K ++ E HQ
Sbjct: 886 VESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKARKLRKGSE-------HQ- 929
Query: 974 VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSS 1032
AIV+ +++++ + SL E H ++ S N T +F ++ GQ V T+
Sbjct: 930 --AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGV 987
Query: 1033 TAGRLLLLLKAISETETSSSKRAK-----------------KKSSYDVGSLVQAEITEIK 1075
T L + A T + K ++ KK + +G +V + IK
Sbjct: 988 TGLLLAVEGPAAKRTMRPTQKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIK 1047
Query: 1076 PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1135
P + + G G IH + + DD + K+G+TVTAR+I DM K+F
Sbjct: 1048 PTHVVVTLEDGIIGCIHASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFK 1102
Query: 1136 W-------------ELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVD 1175
+ ELS++PS L T S E+ GQ VT ++ Y V
Sbjct: 1103 YLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVV 1162
Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
+W + I+ ++ ++ +L ++ L+ ++F +G+A+ V+ + K LL L L
Sbjct: 1163 KKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTLLCLSLT 1222
Query: 1236 -PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1294
P + + EG++ GR+ K+ GL V G V +
Sbjct: 1223 GPHK------------------LEEGEVAMGRVVKVTPN-EGLTVSFPFGKIGTVSIFHM 1263
Query: 1295 KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1354
+ PL + + V+C +L + V + LSLR SS + + + V+
Sbjct: 1264 SDSYSETPLEDFVPQKVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVED 1312
Query: 1355 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE--- 1411
P + I+D+ +++GYV ++ G F L + V L+ S SP K+
Sbjct: 1313 P--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQHSPSKKALY 1367
Query: 1412 ---FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV 1468
P GKL+ RVL + VE++ D+ + + LS G + + ++
Sbjct: 1368 NKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT-----GKPDVLSASLEGQLTKQEERKT 1422
Query: 1469 ESYGLFITIENTNLVGLCHVSELSEDHVD----------NIETIYRAGEKVKVKILKVDK 1518
E+ E N ++ ++ V+ + R G + + +
Sbjct: 1423 EAEERDQKGEKKNQKRNEKKNQKGQEEVEMPSKEKQQPQKPQAQKRGGRECR----ESGS 1478
Query: 1519 EKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESE 1578
E+ R+S K + + D+L E E EE + E + + ++
Sbjct: 1479 EQERVSKKPKKAGLSEEDDSLVDVYYREGKEEAEETNVLPK----EKQTKPAEAPRLQLS 1534
Query: 1579 DGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEK 1638
G + + ++PPL + D E+ + + +A K R +K
Sbjct: 1535 SGFAWNVGLDSLTPALPPLAESSDSEEDEKPH----------QATIKKSKKERELEK--- 1581
Query: 1639 EEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1697
++ E+E+ EE L++ P + D+F+RLV SSPNSS +W++YMAF L ++EKAR++
Sbjct: 1582 QKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAV 1641
Query: 1698 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1757
AERAL+TI+ REE EKLN+WVA NLEN YG+ +E++ KVF+RA+QY +P KV L L
Sbjct: 1642 AERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLAD 1699
Query: 1758 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHK 1816
+Y ++E+ + A EL +M+K+F+ VW++ LL++ Q V+QRAL LP +
Sbjct: 1700 IYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKE 1759
Query: 1817 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1876
H+ I++ A LEF+ G A+R +++FE LS YPKRTD+WS+Y+D I+ G +R +FE
Sbjct: 1760 HVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFE 1819
Query: 1877 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
R I LSL PK+MKF FK+YL+YEK G E+ ++ VK KA+EYVE+
Sbjct: 1820 RVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1864
|
Involved in the biogenesis of rRNA. Homo sapiens (taxid: 9606) |
| >sp|O74835|RRP5_SCHPO rRNA biogenesis protein rrp5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust.
Identities = 389/1382 (28%), Positives = 653/1382 (47%), Gaps = 187/1382 (13%)
Query: 609 VQGFAPRSEL------GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM-----K 657
+ GFA S L G+ P P Y V + RI++ LSF +
Sbjct: 424 ISGFAHISRLSDKKVAGISPNSGP---YKVDSTHEARIINYSYVDNLYILSFQQSVLNQQ 480
Query: 658 PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATV 713
R+ + +++G V G + + P +VV I++G + G +P+ H+AD E
Sbjct: 481 FLRIED---IEVGQFVDGTIAKLIPQGIVV-TISEGIN-GLVPSTHMADIALQFPERRFK 535
Query: 714 MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 773
+ S +K ++L + +LL+ K SL+N+ L D P + G + I
Sbjct: 536 VGSSVKC-----RVLSTNVLRKRVLLTLKKSLLNTDLPLIYDYEQATPGTQTVGTLARIF 590
Query: 774 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
E G V F + F P S+ + D + + VGQ++ I+ + E ++ + ++
Sbjct: 591 EDGAIVEFYNSVRAFLPVSEMSEAYIRDAREHFKVGQTLSVTIVSCDPENRKMRVGCREQ 650
Query: 834 CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 893
S DA L+ E GSV+ G V + + V+V
Sbjct: 651 ---SWDAK-----------------------RLERFENIKAGSVLSGIVLQKTEDSVIVD 684
Query: 894 FEEHSDVYGFITHHQLAGATVESGSVI-----------QAAILDVAKAERLVDLSLKTVF 942
+ V G IT QL + S + + +L +++L+ LSLK
Sbjct: 685 LGDK--VTGVITLGQLCDGDLNKCSKVMNKLRASTKLAEVLVLRKDTSKKLISLSLKKSL 742
Query: 943 IDRFREANSNRQAQKKKRKREASKDLGV---HQTVNAIVEIVKENYLVLSLPEYNHSIGY 999
++ +E NR +E K G T VE + LV +P+ S Y
Sbjct: 743 VEAAKE---NRMPINITDLKEGIKYFGFVRNATTFGVFVEFC--DGLVALVPKAYISEEY 797
Query: 1000 ASVSDYNTQKFPQKQFLNGQSVIATVMAL------------PSSSTAGRLLLLLKAISET 1047
V P + QSV +++ P + + + +++ +
Sbjct: 798 VPV--------PSAVYKPQQSVTCVCLSVELSQEKAFMSFKPLAQKQEKAVEFMESKYDI 849
Query: 1048 ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE-- 1105
+ + KK Y G + A +T K +L + HGR+ ++EV D+ +V+
Sbjct: 850 DNPVDETIKKTYDYVAGKITWAVVTSAKASQLNVDLAANVHGRVDVSEVFDNFGEIVDPN 909
Query: 1106 NLFSNFKIGQTVTARIIAKSNKPDMK----------KSFLWELSIKPSMLTVSEIGSKLL 1155
F G + R++ + + K K FL ELS++PS+L + K
Sbjct: 910 KPLKRFHKGDKIRVRVLGIHDSRNHKFLPISHRVSPKQFL-ELSVRPSILNMEPFSMK-- 966
Query: 1156 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1215
E G VTG+V V E ++++ + ++ ILD + EL Q+ F +GKA
Sbjct: 967 --EPQFKKGDEVTGFVNNVSKECVWVSLTPSVNGRIPILDLTTDVKELNSLQKHFFLGKA 1024
Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
+ +V +N E + + P Q G + T G + G+++ +
Sbjct: 1025 IKCYV--VNAEDSITLSAIGPLQ-GFENLT-------------PGSRLVGKVTNV--NEA 1066
Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
G ++Q+ H+ GRV ++ + P + + V VL + R
Sbjct: 1067 GAILQLPGHMSGRVSRIDMFDDYDILPETKFTRNNLVGVCVLSVDVPNRKV--------- 1117
Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
+S+ NS S V+ K + ++DL I +G+V NV ++G F+ + L A+V
Sbjct: 1118 ---ALSARNSRTQSQPVEIKDKEINSVDDLKIGDICRGFVCNVANQGLFVTIGHNLIARV 1174
Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-NLSN 1454
+ L D +++ + F + +LV G ++ ++ SKR+E++LK S + SEI ++
Sbjct: 1175 KIGELFDTFIKDWKPHFHVNQLVKGSIVGIDNDSKRIEMSLKQS--KIKDSSEITKTFAD 1232
Query: 1455 LHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
+ VG + G + +V YG+ I I+ T N+VGLCH SE+++ V NI +Y +G+KV+ +
Sbjct: 1233 IAVGSNLDGTVVKVGDYGVLIRIDGTDNIVGLCHKSEIADAVVLNISKLYSSGDKVRAHV 1292
Query: 1514 LKVDKEKRRISLGMKSSYFKN--------DADNLQMSSEEESDEAIEEVGSYNRSSLLEN 1565
L VD EKRRI+LG+KSSYF + + ++++M SE++SD + EVGS +
Sbjct: 1293 LDVDSEKRRIALGLKSSYFDSDSDISMSDNEEDVEMRSEDQSDTSESEVGSKD------- 1345
Query: 1566 SSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPD--MDNGISQNQGHT--DE 1621
D++SE+ +L A E ++E+P NG G T D+
Sbjct: 1346 --------DVQSEEVENLESAGDED-----------EEEEPSALQANGFDWTDGSTVFDK 1386
Query: 1622 AKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKY 1681
E + ++ K ++ + R +E + P T +FER + SSPNSS +WI Y
Sbjct: 1387 LADDTEDSEDEEDEEPKRKKSKSDRFDDEEKDLDEIPSTAADFERQLLSSPNSSLLWISY 1446
Query: 1682 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1741
MA+ L++ ++++AR + +RAL TIN REE+EKLN+W+A NLE YG E+++ +VF+
Sbjct: 1447 MAYHLNLNELQEAREVGKRALSTINYREEDEKLNVWMALLNLEVAYGT--EDSLKEVFKE 1504
Query: 1742 ALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EG 1800
A YCD V+ L G+ + + LADE + M+K FK VW++ LL + E
Sbjct: 1505 ACAYCDALIVYEKLCGILIKGGKVDLADEYMQLMLKNFKQVPSVWIQYATFLLNNDKAEK 1564
Query: 1801 VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1860
+++R+L SLP+ +H+ I + AILEFKNG +RGR++FEG+LS YPKR DLW++ +D
Sbjct: 1565 AHGLLERSLQSLPKSEHVGIIEKFAILEFKNGDPERGRTIFEGLLSSYPKRLDLWNVLID 1624
Query: 1861 QEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
E++ D ++R LF+R ++L+L KK KF FKK+L YEK++G++E E VK++A+EYV
Sbjct: 1625 MEMKQDDPSIVRRLFQRLLALNLSTKKAKFAFKKWLAYEKNIGDDEGAEQVKRRAIEYVS 1684
Query: 1921 ST 1922
+
Sbjct: 1685 ES 1686
|
Involved in the biogenesis of rRNA. Required for the formation of 18S and 5.8S rRNA. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q6NS46|RRP5_MOUSE Protein RRP5 homolog OS=Mus musculus GN=Pdcd11 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust.
Identities = 406/1482 (27%), Positives = 685/1482 (46%), Gaps = 172/1482 (11%)
Query: 54 FPRGGGHSLTQRERDEIHA-------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
FPRGG L + E+ +V E ++R +K K KK + + +++
Sbjct: 8 FPRGGTRKLHKSEKSSQQVVEQDNLFDVSTEEGPIKRKKSQKGPAKTKKLKIEKRKSIKS 67
Query: 107 LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
+ F ++L+++ GM++ G V EV+E +LV+ LP GL+G + +
Sbjct: 68 IKEKF------------EILSLESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVTEV 115
Query: 167 LDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
D NE A E+ L LP +F G LV C+V LD E GK+ + LS+
Sbjct: 116 CDAYTQKLNEQVAQEEPLEDLLRLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPK 173
Query: 220 LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDV 274
+ K LS + ++ GM+LT V S+EDHGY++ G+ FL E N G
Sbjct: 174 RVNKVLSADALRPGMLLTGTVSSLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKF 233
Query: 275 KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
K G L VV + VV LS + VS + + +++ L+PG++V +VQ + +
Sbjct: 234 KVGQYLTCVVEEVKSNGGVVSLSVEHSEVSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQ 293
Query: 335 NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
G+ L+FLT+F G VD HL+ Y+ ++ V A IL V P +R V L+L P
Sbjct: 294 FGLQLNFLTFFKGLVDFMHLE-----PKKMGSYSSNQTVKACILCVHPRTRVVRLSLRPI 348
Query: 395 LLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
LH P + + ++G + D V + G + + + AY +S +++ +
Sbjct: 349 FLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIFRLKDGVL---AYARVSHLSDSKKA 405
Query: 452 KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
+ +K GS + RI+ + ++ LA L+ S + D+K G VVKG V+A+
Sbjct: 406 FNAEAFKPGSTHKCRIIDYSQMDELALLSLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKP 465
Query: 512 FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTL 569
FG +V+ +K L P H+++ + P KK+ G E+ RVL ++K++ +T KKTL
Sbjct: 466 FGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTL 525
Query: 570 VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
V SKL++++ Y A L THG I +++ +GC V+FYN VQG P+ EL +P ++
Sbjct: 526 VTSKLSLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETV 585
Query: 630 YHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDL---------VKLGSLVSGVVDV 679
++ GQVVK ++S P+ R+ LSF ++ +R + + V++G LV V
Sbjct: 586 FYTGQVVKVAVLSCEPSKERMLLSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLE 645
Query: 680 VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 739
T + V ++ + +PT HL+DH + ++ ++ G ++L L ++LL
Sbjct: 646 KTKTGLEVAILPHN-TPAFLPTPHLSDHAANGPLLHHWLQTGDTLHRVLCLSQSERHILL 704
Query: 740 SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
K +L+++ + Q P S I P ++ G+V I E G FV+F L+G +P++ D
Sbjct: 705 CRKPALVSTVEGGQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDK 764
Query: 798 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIA 854
S+ + GQ+V + + +V+ R+ LSL+ S CS S SF+ LEE
Sbjct: 765 FVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQG 824
Query: 855 MLQ-SSKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGA 912
+ S + ++ + G V++ VHE D VV S + D+ + + AG
Sbjct: 825 IRSLMSNQDSVLIQTLADMTPGMVLDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQ 884
Query: 913 TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 972
VE G + +L V + V +SL ++R K ++ R++S+ HQ
Sbjct: 885 EVEPGQKKKVVVLHVDMLKLEVHVSLHQDLVNR-----------KTRKLRKSSR----HQ 929
Query: 973 TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSS 1031
IV+ ++E++ V SL E H + ++ +S N T F ++ GQ V T+
Sbjct: 930 ---GIVQHLEESFAVASLVETGHLVAFSLISHLNDTFHFDSEKLRVGQGVCLTLKTTEPG 986
Query: 1032 STAGRLLLLLKAIS----------ETETSSSK--------------------RAKKKSSY 1061
T L+L ++ + ++ET K ++KK+ S
Sbjct: 987 VTG--LILAVEGPASKRTRMPVQRDSETVDDKGEEKEEEEEEEEKEEENLTVKSKKRHSL 1044
Query: 1062 DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 1121
+G V I +K + + GF G IH + + DD V + + K G+ VTAR+
Sbjct: 1045 AIGDKVTGTIKAVKATHVVVTLADGFVGCIHASRILDD-VPVGTSPTTTLKAGKKVTARV 1103
Query: 1122 IA----KSNK--PDMKKSF---LWELSIKPSMLTVSEIGSKLLFEECDVSI-----GQRV 1167
I K++K P F + ELS++PS L S E I GQ V
Sbjct: 1104 IGGRDVKTSKFLPISHPRFVLTILELSVRPSELKGSYSALNTHSESPVEKIRQYQAGQTV 1163
Query: 1168 TGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINK 1225
T + Y V +W + I ++ ++ +L ++ L+ ++F +G+A+ V+ +
Sbjct: 1164 TCFFKKYNVMKKWLEVDIGPDIRGRIPLLLTSLSFKVLKHPDKKFQVGQAIEATVVDPDV 1223
Query: 1226 EKKLLRL-VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1284
+ L L ++ P++ + EG++ GR+ K++ GL V
Sbjct: 1224 PRAFLCLSLIGPYR------------------LEEGEVAMGRVMKVVPN-RGLTVSFPFG 1264
Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1344
G+V L + PL + + V+C +L + V + LSLRSS + N
Sbjct: 1265 KIGKVSMFHLSDSYSEAPLEDFCPQKIVRCYILSTAHRV-----LALSLRSSRTNRETKN 1319
Query: 1345 SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1404
++ P + IED+ +++GYVK V I L + S++S+
Sbjct: 1320 R------IEDP--EINSIEDVKEGQLLRGYVKCVLPSSVIIGLGPSVLGLAKYSHVSECV 1371
Query: 1405 VESPEKE-----FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
PEKE P GKLV +VL V P+ +E++L SD+
Sbjct: 1372 --PPEKELYNGCLPEGKLVTAKVLRVNPMKNLIELSLLPSDT 1411
|
Essential for the generation of mature 18S rRNA, specifically necessary for cleavages at sites A0, 1 and 2 of the 47S precursor. Directly interacts with U3 snoRNA. Mus musculus (taxid: 10090) |
| >sp|A7MB10|RRP5_BOVIN Protein RRP5 homolog OS=Bos taurus GN=PDCD11 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 427 bits (1099), Expect = e-118, Method: Compositional matrix adjust.
Identities = 409/1470 (27%), Positives = 678/1470 (46%), Gaps = 169/1470 (11%)
Query: 54 FPRGGGHSLTQRERDEIHA-------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
FPRGG + E+ + ++ E E+ +R KK +K KT++ ET
Sbjct: 8 FPRGGTRKTHKSEKAFQQSVEQDNLFDISTEEESTKR---KKIQKGPAKTKKLKVETRQ- 63
Query: 107 LGSLFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD 165
S K R +I ++++ GM++ G V EVNE +L I LP GL+G + +
Sbjct: 64 ---------SSKFVREKFEILNVESLCEGMRILGCVKEVNELELAISLPNGLQGYVQVTE 114
Query: 166 ALDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRL 218
D + NE A E+ L LP +F G LV C+V LD K K+ + LSL
Sbjct: 115 ICDAYTEKLNEQVAQEEPLQDLVGLPELFSPGMLVRCVVSSLDTTKG--SKKNVMLSLNP 172
Query: 219 SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGID 273
+ + LS ET++ GM+LT V S+EDHGY++ G+ FLP E N G
Sbjct: 173 KNVNRVLSAETLKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAK 232
Query: 274 VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL 333
+K G L ++ + +R VV LS VS + + + +++ L+PG++V +VQ +
Sbjct: 233 LKVGQYLNCLIEEVKGSRGVVTLSIGHSEVSAAIATEEQSWTLNSLLPGLVVKAQVQKVT 292
Query: 334 ENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNP 393
G+ L FL++F+G VD HL T + N ++V A +L V P +RAV L+L P
Sbjct: 293 PLGLTLKFLSFFSGLVDFMHLDPKKAGTYFSN-----QQVRACVLCVHPRTRAVRLSLRP 347
Query: 394 YLLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 450
L P + + ++G + D V G + T AY + ++ +
Sbjct: 348 VFLQPGRPLTRLLCQQLGAVLDDVPVQGFFGSAGATFKLKD---GTLAYARRNHLSNSKK 404
Query: 451 RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 510
+ +K G+ + RI+ + ++ LA L+ S E + D+KPG +VKGKV+ +
Sbjct: 405 TFKPEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQFLWYHDIKPGALVKGKVLTIK 464
Query: 511 SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKT 568
G +V+ ++ L P H+++ I P KK+ VG E+ RVL K+K++ +T KKT
Sbjct: 465 PHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVLLCDPKAKKLMMTLKKT 524
Query: 569 LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 628
LV+SKL ++ Y +A L THG+I +++ +GC V+FYN VQG PR EL + +P S
Sbjct: 525 LVESKLPAITCYDDAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPES 584
Query: 629 MYHVGQVVKCRIMSSIPASRRINLSFMM--KPTRVSEDD------LVKLGSLVSGVVDVV 680
+++ GQVVK +++ P+ R+ LSF + P + E V G L V
Sbjct: 585 VFYTGQVVKVVVLNCEPSKERMLLSFRLLSDPKQEGEGQSQKKKKAVSAGQLADVKVLEK 644
Query: 681 TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLS 740
T + + V V+ G +PT HL+DH+ + ++ ++ G ++L L +LL
Sbjct: 645 TKDGLKVAVLPHNIP-GFLPTAHLSDHVTNGPLLYHWLQTGDTLHRVLCLSVSEERVLLC 703
Query: 741 AKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 798
K +L+++ + Q P S IHP ++ G+V NI + G FV+F L+G AP++ D
Sbjct: 704 RKPALVSAVEGGQNPKSFSEIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKF 763
Query: 799 RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF---LLEEKIAM 855
S + GQ+V + + +V+ E R+ LSL+ S C+ D + LEE+ +
Sbjct: 764 VTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGV 823
Query: 856 LQSSKHNGSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAG 911
+ S L + + G ++ +V E + G V+ F E V G + + + AG
Sbjct: 824 RSLMSNRDSVLIQTLAEMTPGMALDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAG 881
Query: 912 ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
+E G +A IL+V + V +SL + NR+A+K K+ +
Sbjct: 882 QELEPGQKKKAVILNVDMLKLEVHVSLCHDLV--------NRKAKKLKKGSD-------- 925
Query: 972 QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPS 1030
+ AIV+ ++E++ V SL E H ++ S N T +F ++ GQ V T+
Sbjct: 926 --LQAIVQHLEESFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLQTTEP 983
Query: 1031 SSTAGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEI 1071
T LLL ++ + T R KK + +G +V +
Sbjct: 984 GVTG--LLLAIEGPAAKRTMRQTRKDSETVDEDEEVDPALVVGTVKKHTLSIGDVVTGTV 1041
Query: 1072 TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK 1131
IKP + + G G IH + + DD V + + K+G+ VTAR+I DMK
Sbjct: 1042 KSIKPTHVVVTLEDGIIGCIHASHILDD-VPVGTSPTAKLKVGKKVTARVIGGR---DMK 1097
Query: 1132 K-SFL-----------WELSIKPSML------TVSEIGSKLLFEECDVSIGQRVTGYV-- 1171
FL ELS++PS L T++ L + GQ VT ++
Sbjct: 1098 TFKFLPISHPRFIRTIPELSVRPSELKEDGHTTLNTHSVSPLEKIKQYQPGQTVTCFLKK 1157
Query: 1172 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKK--L 1229
Y + +W + I+ ++ ++ +L ++ L+ ++F IG+A+ V+ + K L
Sbjct: 1158 YNMVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFQIGQALKATVVGPAESSKAFL 1217
Query: 1230 LRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRV 1289
++ P + + +G++ GR+ K+ + GL V GRV
Sbjct: 1218 CLSLIGPHK------------------LKKGEVAMGRVVKV-TPKEGLTVSFPFGRVGRV 1258
Query: 1290 HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1349
+ + L + Q V+C VL + V + LSLRS S TN S
Sbjct: 1259 SMFHVSDSYSETHLEDFVPQQVVRCYVLSAATPV-----LTLSLRS-----SRTNPETKS 1308
Query: 1350 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS--DGYVES 1407
D + IEDL +++G+VK+V G + L + ++S + +
Sbjct: 1309 KITDP---EINSIEDLEEGQLLRGFVKSVQPSGVLVGLGPSVTGLARHPHVSQHNQSKNA 1365
Query: 1408 P-EKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
P ++ P GKL+ +VL + VE++L
Sbjct: 1366 PYDRHLPEGKLLTAKVLRLNHQESLVELSL 1395
|
Essential for the generation of mature 18S rRNA, specifically necessary for cleavages at sites A0, 1 and 2 of the 47S precursor. Directly interacts with U3 snoRNA. Bos taurus (taxid: 9913) |
| >sp|Q05022|RRP5_YEAST rRNA biogenesis protein RRP5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 427 bits (1099), Expect = e-118, Method: Compositional matrix adjust.
Identities = 377/1301 (28%), Positives = 624/1301 (47%), Gaps = 178/1301 (13%)
Query: 690 IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 748
I G K ++P H++D + K G + ++ N N+ ++ K SL+N
Sbjct: 530 IFNGQFKASVPPLHISD--TRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587
Query: 749 AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802
+LP +A +I N + GC + F G L+GF P S+ +
Sbjct: 588 DNELPLVSTYENAKNIKEKNEKTLATIQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647
Query: 803 SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 862
+ +GQ+V +LDV+++ RI + C K++ Q+++
Sbjct: 648 EEHLRLGQTVIVKLLDVDADRRRII-----ATC----------------KVSNEQAAQQK 686
Query: 863 GSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 916
+ +E + G ++I V E V+V + + G I L+ + +E
Sbjct: 687 DT----IENIVPGRTIITVHVIEKTKDSVIVEIPDVG-LRGVIYVGHLSDSRIEQNRAQL 741
Query: 917 -----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
G+ + ++D R+ ++SLK+ I ++A ++ +KD+ +H
Sbjct: 742 KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLI---KDAKKETLPLTYDDVKDLNKDVPMH 798
Query: 972 QTVNAIVE---IVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 1026
+ +I + V N ++ L LP Y +S K F QSV TV
Sbjct: 799 AYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDIS---------KAFYINQSV--TVY 847
Query: 1027 ALPSSSTAGRLLLLLKA----------ISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 1076
L + + LL LKA S E K +GS+V+A+I +K
Sbjct: 848 LLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKSVKK 907
Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARIIA----KSNK--- 1127
+L + HGR+ I EV D + + SN+K + +II KS+K
Sbjct: 908 NQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDVKSHKFLP 967
Query: 1128 --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1185
+ K+ + ELS+KPS L E+ +K L E ++IGQ +TG+V LTIS
Sbjct: 968 ITHKISKASVLELSMKPSELKSKEVHTKSLEE---INIGQELTGFVNNSSGNHLWLTISP 1024
Query: 1186 HLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
LKA++ +LD A S E + F +G A+ V SI++E F + I
Sbjct: 1025 VLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE--------HGFVNAIGKS 1076
Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
VDI NM T I GD + GR+ KI +++ +G + G T+ N
Sbjct: 1077 HVDI---NMST-IKVGDELPGRVLKIAEKY--VLLDLGNKVTGISFITDALNDFSLTLKE 1130
Query: 1305 GYDE--GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1362
+++ + VL + + +ELSLR + S S
Sbjct: 1131 AFEDKINNVIPTTVLSVDEQNK---KIELSLRPATAKTRSIKSH---------------- 1171
Query: 1363 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1422
EDL IV G VKNV KG F+ LSRK++A V +S LSD Y++ +K + + V G+V
Sbjct: 1172 EDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSDSYLKEWKKFYKPMQYVLGKV 1231
Query: 1423 LSVEPLSKRVEVTLKTSDSRTASQSEIN-------NLSNLHVGDIVIGQIKRVESYGLFI 1475
++ + S R+ +TL+ +SEIN S++ GD+ G IK V +G+F+
Sbjct: 1232 VTCDEDS-RISLTLR--------ESEINGDLKVLKTYSDIKAGDVFEGTIKSVTDFGVFV 1282
Query: 1476 TIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1534
++NT N+ GL H++E+++ +++ ++ G++VK +LK + EK++ISL +K+S+F
Sbjct: 1283 KLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKKQISLSLKASHFSK 1342
Query: 1535 DADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASV 1594
+A +++S + ++++ + ++ ++ D D ES+ G
Sbjct: 1343 EA---ELASTTTTTTTVDQLEKEDEDEVMADA--GFNDSDSESDIGDQ------------ 1385
Query: 1595 PPLEVNLDDEQPDMD-NGISQNQGHTDEAKTIDEKNNRHAKKKEK----EEREQEIRAAE 1649
+ D +P+ +G+S + G A +D+ +++ E ++ + + +
Sbjct: 1386 ---NTEVADRKPETSSDGLSLSAGFDWTASILDQAQEEEESDQDQEDFTENKKHKHKRRK 1442
Query: 1650 ERLLEKD-------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERAL 1702
E +++ AP + +FERL+ +PNSS VW+ YMAF L ++++EKAR +AERAL
Sbjct: 1443 ENVVQDKTIDINTRAPESVADFERLLIGNPNSSVVWMNYMAFQLQLSEIEKARELAERAL 1502
Query: 1703 QTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERT 1762
+TIN REE EKLNIW+A NLEN +G EE + +VF RA QY D +H LLG+YE +
Sbjct: 1503 KTINFREEAEKLNIWIAMLNLENTFGT--EETLEEVFSRACQYMDSYTIHTKLLGIYEIS 1560
Query: 1763 EQNKLADELLYKMIKKFK-HSCKVWLRRVQRLLKQQQEG-VQAVVQRALLSLPRHKHIKF 1820
E+ A EL KKF +W+ L+ +E + ++ AL +LP+ HI+
Sbjct: 1561 EKFDKAAELFKATAKKFGGEKVSIWVSWGDFLISHNEEQEARTILGNALKALPKRNHIEV 1620
Query: 1821 ISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880
+ + A LEF G +RGRS+FEG++++ PKR DLW++Y+DQE++ D + LFER I+
Sbjct: 1621 VRKFAQLEFAKGDPERGRSLFEGLVADAPKRIDLWNVYVDQEVKAKDKKKVEDLFERIIT 1680
Query: 1881 LSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
+ K+ KF F K+L++E+S G+E+ IEYVK KA EYV S
Sbjct: 1681 KKITRKQAKFFFNKWLQFEESEGDEKTIEYVKAKATEYVAS 1721
|
Involved in the biogenesis of rRNA. Required for the formation of 18S and 5.8S rRNA. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|O06147|RS1_MYCTU 30S ribosomal protein S1 OS=Mycobacterium tuberculosis GN=rpsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 98/403 (24%), Positives = 186/403 (46%), Gaps = 53/403 (13%)
Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
++ + V++IGS F D +I G V G + KVD + LL I +
Sbjct: 5 TVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64
Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
A+ + +P+E+ +G V VL+ KE K RL+L + +
Sbjct: 65 ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111
Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
+ ++ + + V G + +++ G GL++ IG + E++ + P G +
Sbjct: 112 AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168
Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
++ K++E+ + +V LS R+ L+ S S+ + +L
Sbjct: 169 ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNNLQKG 209
Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
I +G V ++ + G F+ L +D V +S LS +++ P + +G V VL V+
Sbjct: 210 TIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268
Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
+RV ++LK + + + + H +G IV G++ ++ +G F+ +E + GL H
Sbjct: 269 RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322
Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
+SEL+E HV+ + + G+ VK++ +D E+RRISL +K +
Sbjct: 323 ISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365
|
Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. Mycobacterium tuberculosis (taxid: 1773) |
| >sp|O84100|RS1_CHLTR 30S ribosomal protein S1 OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=rpsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 102/401 (25%), Positives = 184/401 (45%), Gaps = 63/401 (15%)
Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1216
++IG+R G V + + L + + L I D ++ PSE+ E + +
Sbjct: 217 ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271
Query: 1217 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
+LS++KEK + L L+ P++D ++ G V G+I K+L
Sbjct: 272 --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVRGKIVKLL 316
Query: 1272 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFH 1328
G ++I + G +H +E+ KNI DP ++G V+ VL I +
Sbjct: 317 PY--GAFIEIEEGIEGLIHVSEMSWVKNIV--DPNEVVNKGDEVEVVVLSIQKD-----E 367
Query: 1329 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1388
++SL G+ T + P ++E E + V +KN+T+ G F+ L
Sbjct: 368 GKISL-----GLKQTKHN--------PWDNIE--EKYPIGLRVTAEIKNLTNYGAFVELE 412
Query: 1389 RKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
++ + +S++S V P + F G V +LSV+ SK++ + +K +
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472
Query: 1448 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1507
E+ VG + G + ++ ++G F+ ++N + GL HVSELSE IE + G+
Sbjct: 473 EVM----FPVGSDISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPFAKIEDVLSIGD 527
Query: 1508 KVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1548
KV K++K+D + +++SL +K + + D + EE SD
Sbjct: 528 KVSAKVIKLDPDHKKVSLSIK-EFLVHGGDAGHDAEEESSD 567
|
Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. Chlamydia trachomatis (strain D/UW-3/Cx) (taxid: 272561) |
| >sp|P46836|RS1_MYCLE 30S ribosomal protein S1 OS=Mycobacterium leprae (strain TN) GN=rpsA PE=3 SV=2 | Back alignment and function description |
|---|
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 97/403 (24%), Positives = 185/403 (45%), Gaps = 53/403 (13%)
Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
++ + V+++GS F D +I G V G + KVD + LL I +
Sbjct: 5 AVPSPQIAVNDVGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64
Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
A+ + +P+E+ +G V VL+ KE K RL+L + +
Sbjct: 65 ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111
Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
+ ++ + + V G + +++ G GL++ IG + E++ + P G +
Sbjct: 112 AWGTIEALKEKDEAVKGIVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168
Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
++ K++E+ + +V LS R+ L+ S S+ + L
Sbjct: 169 ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNQLQKG 209
Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
I +G V ++ + G F+ L +D V +S LS +++ P + +G V VL V+
Sbjct: 210 AIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGNEVTVEVLDVDMD 268
Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
+RV ++LK + + + + H +G IV G++ ++ +G F+ +E + GL H
Sbjct: 269 RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322
Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
+SEL+E HV+ + + G+ VK++ +D E+RRISL +K +
Sbjct: 323 ISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365
|
Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. Mycobacterium leprae (taxid: 1769) |
| >sp|Q9Z8M3|RS1_CHLPN 30S ribosomal protein S1 OS=Chlamydia pneumoniae GN=rpsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 99/390 (25%), Positives = 178/390 (45%), Gaps = 62/390 (15%)
Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1216
+SIG+ G V + + L + + L I D ++ PSE+ E + +
Sbjct: 217 ISIGEYRKGVVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271
Query: 1217 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
+LS++KEK + L L+ P++D ++ G V G+I K+L
Sbjct: 272 --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVLGKIVKLL 316
Query: 1272 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFH 1328
G ++I + G +H +E+ KNI DP ++G V+ VL I +
Sbjct: 317 PY--GAFIEIEEGIEGLIHISEMSWVKNIV--DPSEVVNKGDEVEAIVLSIQKD-----E 367
Query: 1329 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1388
++SL G+ T + P ++E E + V +KN+T+ G F+ L
Sbjct: 368 GKISL-----GLKQTERN--------PWDNIE--EKYPIGLHVNAEIKNLTNYGAFVELE 412
Query: 1389 RKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
++ + +S++S V P + F G V +LSV+ SK++ + +K S ++
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESKKITLGVKQLSSNPWNEI 472
Query: 1448 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1507
E + G ++ G + ++ ++G F+ ++N + GL HVSELS+ IE I GE
Sbjct: 473 E----AMFPAGTVISGVVTKITAFGAFVELQN-GIEGLIHVSELSDKPFAKIEDIISIGE 527
Query: 1508 KVKVKILKVDKEKRRISLGMKSSYFKNDAD 1537
V K++K+D + +++SL +K N D
Sbjct: 528 NVSAKVIKLDPDHKKVSLSVKEYLADNAYD 557
|
Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. Chlamydia pneumoniae (taxid: 83558) |
| >sp|O06000|RS1H_BACC1 30S ribosomal protein S1 homolog OS=Bacillus cereus (strain ATCC 10987) GN=BCE_1625 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 102/398 (25%), Positives = 181/398 (45%), Gaps = 53/398 (13%)
Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
++ +G VTG V KV+ + L+ + + D SEL HI KA
Sbjct: 14 ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60
Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
V+ +++ +L + L +S + VD +Q G + + I++G GL
Sbjct: 61 VVELDQILELKIIKLEENDLVLSKRAVDAEKAWIELQEKFTSGHVFDVTVKDIVNG--GL 118
Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
VV +G P VH+ E + Y +G+ + K++E+ R V LS
Sbjct: 119 VVDLGVRGFIPASLVEVHYVE--------DFTDY-KGKTLAVKIVELDRE---KNRVILS 166
Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
++ ++ ++ K E I L +V+G V+ +T G F+ + +D
Sbjct: 167 HKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVD 212
Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
V +S +S VE P + G+ V +VLSV+ ++R+ +++K + N
Sbjct: 213 GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NIA 268
Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
+ GDI G +KR+ ++G F+ I + GL HVS+++ HV N + G++VKVK
Sbjct: 269 GEVKAGDIREGIVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327
Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
+L+V ++RISL +K ++ +N+ E +D A
Sbjct: 328 VLEVHVAEKRISLSIKEAFEENNVTEDYSQYEPNADSA 365
|
Bacillus cereus (strain ATCC 10987) (taxid: 222523) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1924 | ||||||
| 297739784 | 1862 | unnamed protein product [Vitis vinifera] | 0.956 | 0.988 | 0.725 | 0.0 | |
| 359481849 | 1879 | PREDICTED: protein RRP5 homolog [Vitis v | 0.960 | 0.983 | 0.724 | 0.0 | |
| 356533079 | 1885 | PREDICTED: protein RRP5 homolog [Glycine | 0.972 | 0.992 | 0.653 | 0.0 | |
| 449453908 | 1898 | PREDICTED: protein RRP5 homolog [Cucumis | 0.972 | 0.986 | 0.627 | 0.0 | |
| 240255326 | 1896 | RNA binding protein [Arabidopsis thalian | 0.955 | 0.969 | 0.627 | 0.0 | |
| 10998136 | 1765 | pre-rRNA processing protein RRP5 [Arabid | 0.907 | 0.989 | 0.632 | 0.0 | |
| 297833988 | 1843 | S1 RNA-binding domain-containing protein | 0.858 | 0.895 | 0.635 | 0.0 | |
| 222636634 | 1898 | hypothetical protein OsJ_23484 [Oryza sa | 0.924 | 0.936 | 0.567 | 0.0 | |
| 242043296 | 1862 | hypothetical protein SORBIDRAFT_02g00600 | 0.898 | 0.928 | 0.564 | 0.0 | |
| 218199275 | 1848 | hypothetical protein OsI_25303 [Oryza sa | 0.898 | 0.935 | 0.551 | 0.0 |
| >gi|297739784|emb|CBI29966.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2739 bits (7100), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1386/1911 (72%), Positives = 1600/1911 (83%), Gaps = 70/1911 (3%)
Query: 18 KFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRERDEIHAEVDAE 77
K ASK FK +Q N+AV ++ LAL +DDVP FPRGGG L+++E D I AEVDAE
Sbjct: 18 KLRGASKKPFKPRMRQ-NEAVPSESLALQMEDDVPDFPRGGGSLLSRQEHDAIRAEVDAE 76
Query: 78 FEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKL 137
FEA ER KKNK KK + A E DD+GSLFGDGI+GKLPR+ANKITLKNIS GMKL
Sbjct: 77 FEAGERKTKKKNKNAKKTKKNYALE--DDMGSLFGDGITGKLPRFANKITLKNISPGMKL 134
Query: 138 WGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIV 197
WGVVAEVNEKDL I LPGGLRGL RA++A DP+ NEI+ E LP IFH+GQLVSC+V
Sbjct: 135 WGVVAEVNEKDLGISLPGGLRGLVRASEAFDPLFSNEIKDAEGIFLPRIFHIGQLVSCVV 194
Query: 198 LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSF 257
LQLDDDKKE GKR+IWLSLRLSLL+KG +L+ +QEGMVLTAYVKSIEDHGYILHFGLPSF
Sbjct: 195 LQLDDDKKEKGKRRIWLSLRLSLLHKGFTLDALQEGMVLTAYVKSIEDHGYILHFGLPSF 254
Query: 258 TGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISID 317
TGFLP+++ AEN I++ G +LQGV+RSID+ KVVYLSSDPDT+SKCVTKDLKGISID
Sbjct: 255 TGFLPKSSQAEN--IEINTGQILQGVIRSIDKAHKVVYLSSDPDTISKCVTKDLKGISID 312
Query: 318 LLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARI 377
LL+PGMMV+ RVQS ENGVMLSFLTYFTGTVDIFHLQ TFP++NWK+DYNQ+KKVNARI
Sbjct: 313 LLIPGMMVNARVQSTFENGVMLSFLTYFTGTVDIFHLQTTFPSSNWKDDYNQNKKVNARI 372
Query: 378 LFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTP 437
LF+DP++RAVGLTLNP+L++N+APP VK GDIYD SKV+RVDRGLGLLL++PSTP STP
Sbjct: 373 LFIDPSTRAVGLTLNPHLVNNKAPPCPVKTGDIYDHSKVIRVDRGLGLLLEVPSTPASTP 432
Query: 438 AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 497
YVT+ DVA+EEVRK+EKKYKEGS VRVRILGFR+LEGLA G LKASAFEG VFTHSDVK
Sbjct: 433 TYVTLFDVADEEVRKMEKKYKEGSHVRVRILGFRNLEGLAMGTLKASAFEGSVFTHSDVK 492
Query: 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 557
PGMVVK KVIAVDSFGAIVQFP GVKALCPL HMSEF+IVKP KKFKVGAEL+FRVLG K
Sbjct: 493 PGMVVKAKVIAVDSFGAIVQFPSGVKALCPLRHMSEFDIVKPRKKFKVGAELIFRVLGCK 552
Query: 558 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
SKRITVTHKKTL+KSKL I+SSY +AT+ LITHGWITKIEKHGCF+RFYNGVQGFAP SE
Sbjct: 553 SKRITVTHKKTLLKSKLGIISSYTDATEGLITHGWITKIEKHGCFIRFYNGVQGFAPSSE 612
Query: 618 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVV 677
LGL+PGC S MYHVGQVVKCR+ S+PASRRINLSF++KPTR+SEDD+VKLGS+V GVV
Sbjct: 613 LGLEPGCNTSLMYHVGQVVKCRVKGSVPASRRINLSFIIKPTRISEDDMVKLGSVVGGVV 672
Query: 678 DVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNL 737
D VTP+A++V V AKGY KGTI TEHLADH HA +MKS +KPGYEFDQLLVLD E +N
Sbjct: 673 DRVTPHAIIVNVSAKGYLKGTISTEHLADHQGHAALMKSTLKPGYEFDQLLVLDVEGNNF 732
Query: 738 LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
+LSAKYSLINSAQQLP D + IHPNSVVHGY+CNIIETGCFVRFLGRLTGF+PR+K +D
Sbjct: 733 ILSAKYSLINSAQQLPLDLTQIHPNSVVHGYICNIIETGCFVRFLGRLTGFSPRNKVMDD 792
Query: 798 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ 857
QRA S+ +++GQSVRSNILDVNSETGRITLSLKQSCCSSTDASF+QE+FLLEEKIA LQ
Sbjct: 793 QRAVPSEAFFIGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFIQEYFLLEEKIAKLQ 852
Query: 858 SSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESG 917
S SELKW EGF IG+VIEGK+H++ DFGVV+SFE+++DV+GFITH+QL T E G
Sbjct: 853 LSDSEHSELKWAEGFNIGTVIEGKIHDAKDFGVVISFEKYNDVFGFITHYQL---TAERG 909
Query: 918 SVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAI 977
S +QA +LDVAK ERLVDLSLK F+DR +E +SN QA KKKR+REA K+L HQTVNAI
Sbjct: 910 STVQAVVLDVAKTERLVDLSLKPEFLDRHKEDSSNSQAGKKKRRREAYKELQPHQTVNAI 969
Query: 978 VEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL 1037
VEIVKENYL S +KQFL+GQSVIA+VMALPS ST GRL
Sbjct: 970 VEIVKENYLASSF-------------------IARKQFLHGQSVIASVMALPSPSTVGRL 1010
Query: 1038 LLLLKAISE-TETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 1096
LL+LK++SE TETSSSKRAKKKSSY+VGSLVQAEITEIKPLELRLKFGIGFHGR+HITEV
Sbjct: 1011 LLVLKSVSEATETSSSKRAKKKSSYNVGSLVQAEITEIKPLELRLKFGIGFHGRVHITEV 1070
Query: 1097 NDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK-KSFLWELSIKPSMLTVS-EIGSKL 1154
D+ NV+EN FSNF+IGQTV+ARI+AK+NK + K+ WELSIKP MLT S E+ +KL
Sbjct: 1071 CDE--NVIENPFSNFRIGQTVSARIVAKANKSENNGKNHQWELSIKPEMLTGSIEVENKL 1128
Query: 1155 LFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGK 1214
+ E +S GQRVTGYVYKV+NEW LTISRH+KAQLF+LD++ EP+ELQEFQ+RF +GK
Sbjct: 1129 VDAEFRISTGQRVTGYVYKVENEWIWLTISRHIKAQLFLLDTSCEPNELQEFQKRFEVGK 1188
Query: 1215 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV 1274
AV+G+VLS NKEKKLLR+VL F N+ IH+GD +GGRISKIL GV
Sbjct: 1189 AVSGYVLSANKEKKLLRMVLHQFS-------------NLIPHIHKGDTLGGRISKILPGV 1235
Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
GGL+VQIGPHLYG+VHFTELK+ VSDPLSGY EGQFVKCKVLEI + +GT HV+LSL
Sbjct: 1236 GGLLVQIGPHLYGKVHFTELKDSWVSDPLSGYHEGQFVKCKVLEIGHSEKGTVHVDLSLW 1295
Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
SSL+GM S NS +EKI++L +M+VQGYVKNVTSKGCFI+LSRKLDA+
Sbjct: 1296 SSLNGMHSPNS------------RVEKIDNLHSDMLVQGYVKNVTSKGCFILLSRKLDAR 1343
Query: 1395 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
+LL+NLSDGYVE PE+EFPIGKLV+GRVLSVEPLS+RVEVTLKTS + + +SE+N+ S+
Sbjct: 1344 ILLANLSDGYVEKPEREFPIGKLVSGRVLSVEPLSRRVEVTLKTSSATSVQKSEVNDFSS 1403
Query: 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
+ VGDI+ G IKRVESYGLFITI++TN+VGLCH+SELS+DH+ NIET Y+AGE+V KIL
Sbjct: 1404 ILVGDIIFGTIKRVESYGLFITIDDTNMVGLCHISELSDDHISNIETKYKAGERVAAKIL 1463
Query: 1515 KVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMD 1574
KVD+E+ RISLGMK+SY K N V S+ LEN+S +Q++D
Sbjct: 1464 KVDEERHRISLGMKNSYIKETTQNNGF------------VDDTQLSTFLENNSREIQNLD 1511
Query: 1575 MESEDGGSLVLAQIESRASVPPLEVNLDD-EQPDMDNGISQNQGHTDEAKTIDEKNNRHA 1633
+E ED VL+Q+ESRAS+ PLEV+LDD ++D+ + QN +T+E TIDEK+ R A
Sbjct: 1512 VEYEDEEYPVLSQVESRASILPLEVDLDDVNHSNLDDAVGQNHIYTNETNTIDEKSKRRA 1571
Query: 1634 KKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEK 1693
KKK KEE+EQEIRAAEERL+ D PRT DEFE+LVR SPNSSF+WIKYMA MLS+AD+EK
Sbjct: 1572 KKKAKEEKEQEIRAAEERLMLNDVPRTADEFEKLVRGSPNSSFLWIKYMALMLSLADIEK 1631
Query: 1694 ARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHL 1753
ARSIAERAL+TINIREE+EKLNIW+AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHL
Sbjct: 1632 ARSIAERALRTINIREESEKLNIWMAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHL 1691
Query: 1754 ALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLP 1813
ALLG+YERTEQ+KLADELL KM KKFKHSCKVWLRRVQ +LKQ Q+GVQ V+ RALL LP
Sbjct: 1692 ALLGMYERTEQHKLADELLEKMTKKFKHSCKVWLRRVQNVLKQHQDGVQPVINRALLCLP 1751
Query: 1814 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRG 1873
RHKHIKFISQTAILEFK+GV DRGRSMFEG+L EYPKRTDLWS+YLDQEIRLGD+D+IR
Sbjct: 1752 RHKHIKFISQTAILEFKSGVPDRGRSMFEGMLREYPKRTDLWSVYLDQEIRLGDIDIIRA 1811
Query: 1874 LFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
LFERAI+LSL P+KMKFLFKKYLEYEKS G+EERIE VK+KAMEY STLA
Sbjct: 1812 LFERAINLSLEPRKMKFLFKKYLEYEKSQGDEERIESVKRKAMEYANSTLA 1862
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359481849|ref|XP_002276633.2| PREDICTED: protein RRP5 homolog [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2737 bits (7095), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1391/1921 (72%), Positives = 1607/1921 (83%), Gaps = 73/1921 (3%)
Query: 18 KFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRERDEIHAEVDAE 77
K ASK FK +Q N+AV ++ LAL +DDVP FPRGGG L+++E D I AEVDAE
Sbjct: 18 KLRGASKKPFKPRMRQ-NEAVPSESLALQMEDDVPDFPRGGGSLLSRQEHDAIRAEVDAE 76
Query: 78 FEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKL 137
FEA ER KKNK KK + A E DD+GSLFGDGI+GKLPR+ANKITLKNIS GMKL
Sbjct: 77 FEAGERKTKKKNKNAKKTKKNYALE--DDMGSLFGDGITGKLPRFANKITLKNISPGMKL 134
Query: 138 WGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIV 197
WGVVAEVNEKDL I LPGGLRGL RA++A DP+ NEI+ E LP IFH+GQLVSC+V
Sbjct: 135 WGVVAEVNEKDLGISLPGGLRGLVRASEAFDPLFSNEIKDAEGIFLPRIFHIGQLVSCVV 194
Query: 198 LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSF 257
LQLDDDKKE GKR+IWLSLRLSLL+KG +L+ +QEGMVLTAYVKSIEDHGYILHFGLPSF
Sbjct: 195 LQLDDDKKEKGKRRIWLSLRLSLLHKGFTLDALQEGMVLTAYVKSIEDHGYILHFGLPSF 254
Query: 258 TGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISID 317
TGFLP+++ A+ + I++ G +LQGV+RSID+ KVVYLSSDPDT+SKCVTKDLKGISID
Sbjct: 255 TGFLPKSSQADQN-IEINTGQILQGVIRSIDKAHKVVYLSSDPDTISKCVTKDLKGISID 313
Query: 318 LLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARI 377
LL+PGMMV+ RVQS ENGVMLSFLTYFTGTVDIFHLQ TFP++NWK+DYNQ+KKVNARI
Sbjct: 314 LLIPGMMVNARVQSTFENGVMLSFLTYFTGTVDIFHLQTTFPSSNWKDDYNQNKKVNARI 373
Query: 378 LFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTP 437
LF+DP++RAVGLTLNP+L++N+APP VK GDIYD SKV+RVDRGLGLLL++PSTP STP
Sbjct: 374 LFIDPSTRAVGLTLNPHLVNNKAPPCPVKTGDIYDHSKVIRVDRGLGLLLEVPSTPASTP 433
Query: 438 AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 497
YVT YKEGS VRVRILGFR+LEGLA G LKASAFEG VFTHSDVK
Sbjct: 434 TYVT---------------YKEGSHVRVRILGFRNLEGLAMGTLKASAFEGSVFTHSDVK 478
Query: 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 557
PGMVVK KVIAVDSFGAIVQFP GVKALCPL HMSEF+IVKP KKFKVGAEL+FRVLG K
Sbjct: 479 PGMVVKAKVIAVDSFGAIVQFPSGVKALCPLRHMSEFDIVKPRKKFKVGAELIFRVLGCK 538
Query: 558 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
SKRITVTHKKTL+KSKL I+SSY +AT+ LITHGWITKIEKHGCF+RFYNGVQGFAP SE
Sbjct: 539 SKRITVTHKKTLLKSKLGIISSYTDATEGLITHGWITKIEKHGCFIRFYNGVQGFAPSSE 598
Query: 618 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVV 677
LGL+PGC S MYHVGQVVKCR+ S+PASRRINL +D+VKLGS+V GVV
Sbjct: 599 LGLEPGCNTSLMYHVGQVVKCRVKGSVPASRRINL-----------NDMVKLGSVVGGVV 647
Query: 678 DVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNL 737
D VTP+A++V V AKGY KGTI TEHLADH HA +MKS +KPGYEFDQLLVLD E +N
Sbjct: 648 DRVTPHAIIVNVSAKGYLKGTISTEHLADHQGHAALMKSTLKPGYEFDQLLVLDVEGNNF 707
Query: 738 LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
+LSAKYSLINSAQQLP D + IHPNSVVHGY+CNIIETGCFVRFLGRLTGF+PR+K +D
Sbjct: 708 ILSAKYSLINSAQQLPLDLTQIHPNSVVHGYICNIIETGCFVRFLGRLTGFSPRNKVMDD 767
Query: 798 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ 857
QRA S+ +++GQSVRSNILDVNSETGRITLSLKQSCCSSTDASF+QE+FLLEEKIA LQ
Sbjct: 768 QRAVPSEAFFIGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFIQEYFLLEEKIAKLQ 827
Query: 858 SSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESG 917
S SELKW EGF IG+VIEGK+H++ DFGVV+SFE+++DV+GFITH+QL T E G
Sbjct: 828 LSDSEHSELKWAEGFNIGTVIEGKIHDAKDFGVVISFEKYNDVFGFITHYQL---TAERG 884
Query: 918 SVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAI 977
S +QA +LDVAK ERLVDLSLK F+DR +E +SN QA KKKR+REA K+L HQTVNAI
Sbjct: 885 STVQAVVLDVAKTERLVDLSLKPEFLDRHKEDSSNSQAGKKKRRREAYKELQPHQTVNAI 944
Query: 978 VEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL 1037
VEIVKENYLVLSLPEYN++IGYASVSDYNTQKF QKQFL+GQSVIA+VMALPS ST GRL
Sbjct: 945 VEIVKENYLVLSLPEYNYAIGYASVSDYNTQKFAQKQFLHGQSVIASVMALPSPSTVGRL 1004
Query: 1038 LLLLKAISE-TETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 1096
LL+LK++SE TETSSSKRAKKKSSY+VGSLVQAEITEIKPLELRLKFGIGFHGR+HITEV
Sbjct: 1005 LLVLKSVSEATETSSSKRAKKKSSYNVGSLVQAEITEIKPLELRLKFGIGFHGRVHITEV 1064
Query: 1097 NDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK-KSFLWELSIKPSMLTVS-EIGSKL 1154
D+ NV+EN FSNF+IGQTV+ARI+AK+NK + K+ WELSIKP MLT S E+ +KL
Sbjct: 1065 CDE--NVIENPFSNFRIGQTVSARIVAKANKSENNGKNHQWELSIKPEMLTGSIEVENKL 1122
Query: 1155 LFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGK 1214
+ E +S GQRVTGYVYKV+NEW LTISRH+KAQLF+LD++ EP+ELQEFQ+RF +GK
Sbjct: 1123 VDAEFRISTGQRVTGYVYKVENEWIWLTISRHIKAQLFLLDTSCEPNELQEFQKRFEVGK 1182
Query: 1215 AVTGHVLSINKEKKLLRLVLRPFQ--DGISD-KTVDISN-------DNMQTFIHEGDIVG 1264
AV+G+VLS NKEKKLLR+VL F +G D K ++I N +N+ IH+GD +G
Sbjct: 1183 AVSGYVLSANKEKKLLRMVLHQFSVSNGTLDGKVLNIDNQHCNPPIENLIPHIHKGDTLG 1242
Query: 1265 GRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVR 1324
GRISKIL GVGGL+VQIGPHLYG+VHFTELK+ VSDPLSGY EGQFVKCKVLEI + +
Sbjct: 1243 GRISKILPGVGGLLVQIGPHLYGKVHFTELKDSWVSDPLSGYHEGQFVKCKVLEIGHSEK 1302
Query: 1325 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1384
GT HV+LSL SSL+GM S NS +EKI++L +M+VQGYVKNVTSKGCF
Sbjct: 1303 GTVHVDLSLWSSLNGMHSPNS------------RVEKIDNLHSDMLVQGYVKNVTSKGCF 1350
Query: 1385 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1444
I+LSRKLDA++LL+NLSDGYVE PE+EFPIGKLV+GRVLSVEPLS+RVEVTLKTS + +
Sbjct: 1351 ILLSRKLDARILLANLSDGYVEKPEREFPIGKLVSGRVLSVEPLSRRVEVTLKTSSATSV 1410
Query: 1445 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1504
+SE+N+ S++ VGDI+ G IKRVESYGLFITI++TN+VGLCH+SELS+DH+ NIET Y+
Sbjct: 1411 QKSEVNDFSSILVGDIIFGTIKRVESYGLFITIDDTNMVGLCHISELSDDHISNIETKYK 1470
Query: 1505 AGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLE 1564
AGE+V KILKVD+E+ RISLGMK+SY K N V S+ LE
Sbjct: 1471 AGERVAAKILKVDEERHRISLGMKNSYIKETTQNNGF------------VDDTQLSTFLE 1518
Query: 1565 NSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDD-EQPDMDNGISQNQGHTDEAK 1623
N+S +Q++D+E ED VL+Q+ESRAS+ PLEV+LDD ++D+ + QN +T+E
Sbjct: 1519 NNSREIQNLDVEYEDEEYPVLSQVESRASILPLEVDLDDVNHSNLDDAVGQNHIYTNETN 1578
Query: 1624 TIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMA 1683
TIDEK+ R AKKK KEE+EQEIRAAEERL+ D PRT DEFE+LVR SPNSSF+WIKYMA
Sbjct: 1579 TIDEKSKRRAKKKAKEEKEQEIRAAEERLMLNDVPRTADEFEKLVRGSPNSSFLWIKYMA 1638
Query: 1684 FMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRAL 1743
MLS+AD+EKARSIAERAL+TINIREE+EKLNIW+AYFNLENEYGNPPEEAVVKVFQRAL
Sbjct: 1639 LMLSLADIEKARSIAERALRTINIREESEKLNIWMAYFNLENEYGNPPEEAVVKVFQRAL 1698
Query: 1744 QYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQA 1803
QYCDPKKVHLALLG+YERTEQ+KLADELL KM KKFKHSCKVWLRRVQ +LKQ Q+GVQ
Sbjct: 1699 QYCDPKKVHLALLGMYERTEQHKLADELLEKMTKKFKHSCKVWLRRVQNVLKQHQDGVQP 1758
Query: 1804 VVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1863
V+ RALL LPRHKHIKFISQTAILEFK+GV DRGRSMFEG+L EYPKRTDLWS+YLDQEI
Sbjct: 1759 VINRALLCLPRHKHIKFISQTAILEFKSGVPDRGRSMFEGMLREYPKRTDLWSVYLDQEI 1818
Query: 1864 RLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1923
RLGD+D+IR LFERAI+LSL P+KMKFLFKKYLEYEKS G+EERIE VK+KAMEY STL
Sbjct: 1819 RLGDIDIIRALFERAINLSLEPRKMKFLFKKYLEYEKSQGDEERIESVKRKAMEYANSTL 1878
Query: 1924 A 1924
A
Sbjct: 1879 A 1879
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533079|ref|XP_003535096.1| PREDICTED: protein RRP5 homolog [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2470 bits (6402), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1263/1932 (65%), Positives = 1541/1932 (79%), Gaps = 61/1932 (3%)
Query: 1 MAASSRKSQKKS-SKDGPKFNKASKNQFKNSKKQINDAVEA---QDLALPPDDDVPVFPR 56
MA S+K QKK+ S D PK +KASK FK K++ N AV A + L+LP +D+VP FPR
Sbjct: 1 MAPHSKKPQKKNDSVDKPKIDKASKKIFKPKKREQNIAVAAAKSEALSLPLEDEVPDFPR 60
Query: 57 GGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGIS 116
GG S R + EF A + + KKK K K+NE DD GSL G+GI+
Sbjct: 61 GGEFSAKGRNDYD-------EFGAEDPSKKTRKKKKGKNASGKSNEAADDWGSLSGNGIT 113
Query: 117 GKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIE 176
GKLPR NKITL+NI+ GMKLWGVVAEVNEKDLV+ LPGGLRGL A+DA+DPI D++IE
Sbjct: 114 GKLPRRVNKITLRNITPGMKLWGVVAEVNEKDLVVSLPGGLRGLVHASDAVDPIFDDKIE 173
Query: 177 ANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVL 236
E L +F VGQLVSC+VL+LDDDKKE G RKIWLSLRLSLL+K +L+ VQEGMVL
Sbjct: 174 VGEI-FLSGVFCVGQLVSCVVLRLDDDKKEKGSRKIWLSLRLSLLHKNYNLDVVQEGMVL 232
Query: 237 TAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYL 296
AYVKSIEDHGYILHFGLP F GFLP+N+ A G +VK G LLQG+VRSID+ RKVVYL
Sbjct: 233 AAYVKSIEDHGYILHFGLPFFMGFLPKNSSAGWGG-EVKIGKLLQGLVRSIDKVRKVVYL 291
Query: 297 SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 356
SSDPDT++K VTKDL+G+SIDLLVPGM+V+ V+SILENGVMLSFLTYFTGTVD+FHLQN
Sbjct: 292 SSDPDTITKSVTKDLRGLSIDLLVPGMLVNACVKSILENGVMLSFLTYFTGTVDLFHLQN 351
Query: 357 TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKV 416
+P NWK+ ++ +KV +RILF+DP+SRAVGLTLNP+L+ NRAPPSHVK+GDIYD SKV
Sbjct: 352 IYPGKNWKDKCSESQKVVSRILFIDPSSRAVGLTLNPHLVQNRAPPSHVKIGDIYDNSKV 411
Query: 417 VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGL 476
VRVDRGLGLLL++PS P TPA+V+ YKEG+ VRVRILG R+LEG+
Sbjct: 412 VRVDRGLGLLLEVPSIPEPTPAFVS---------------YKEGNHVRVRILGLRYLEGI 456
Query: 477 ATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 536
ATG+LKASA E VFTHSDVKPGMVVK K+++VDSFGAIVQ PGGVKALCPL HMSE EI
Sbjct: 457 ATGVLKASALEEEVFTHSDVKPGMVVKAKILSVDSFGAIVQIPGGVKALCPLRHMSELEI 516
Query: 537 VKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
KPGKKFKVGAELVFRVLG KSKR+TVTHKKTLVKSKL I+SSYA+ATD LITHGWITKI
Sbjct: 517 SKPGKKFKVGAELVFRVLGCKSKRVTVTHKKTLVKSKLGIISSYADATDGLITHGWITKI 576
Query: 597 EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
E HGCFVRFYNGVQGFAPRSELGL+PG +P ++Y+VGQ VKCR++S IPASRRINL
Sbjct: 577 EVHGCFVRFYNGVQGFAPRSELGLEPGADPGTVYNVGQAVKCRVISCIPASRRINL---- 632
Query: 657 KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKS 716
+D+V LGSLVSG VD +T NAVVVYV A G+S+GTI EHLADH A +M S
Sbjct: 633 -------NDMVTLGSLVSGAVDRITSNAVVVYVNASGFSRGTISMEHLADHHGQAILMHS 685
Query: 717 VIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 776
V+KPGY FDQLLVLD + +NL+LSAK SLI AQQ+P+D + IHPNSVVHGY+CN+IE+G
Sbjct: 686 VLKPGYNFDQLLVLDVKGNNLILSAKSSLIKHAQQIPADINQIHPNSVVHGYICNLIESG 745
Query: 777 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
CFVRFLG LTGFAPR+KA D Q++++ + YY+GQSVRSNI +V+SETGR+TLSLKQ+ CS
Sbjct: 746 CFVRFLGHLTGFAPRNKAADDQKSNILEAYYIGQSVRSNISNVSSETGRVTLSLKQTACS 805
Query: 837 STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
STDASF+Q++FL+++KIA L+ S+ KW EGF IG V +GKV D G+V+SFE
Sbjct: 806 STDASFIQDYFLMDDKIARLEYCGSGASDTKWDEGFNIGMVAKGKVKAVEDVGLVISFEH 865
Query: 897 HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQ 956
++DV+GFI ++QLAG +ESGS+++A +LDV KA++LV+L+LK FI+R +E++ +R
Sbjct: 866 YNDVFGFIANYQLAGTILESGSIVEALVLDVGKADKLVELTLKPEFINRSKESSISR-TN 924
Query: 957 KKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFL 1016
KKKR+REASKDL +HQTVNA+VEIVKENYLVLS+PE +++IGYASVSDYN Q+FP KQ+
Sbjct: 925 KKKRRREASKDLVLHQTVNAVVEIVKENYLVLSIPENDYTIGYASVSDYNAQRFPHKQYQ 984
Query: 1017 NGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 1076
NGQSV+ATVMALPS T+GRLLLL+ ++ET +SS + KK S VG+LV+AEIT+IK
Sbjct: 985 NGQSVVATVMALPSPETSGRLLLLVDVVNETSSSSKRTKKKSSYK-VGTLVEAEITDIKT 1043
Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPD-MKKSFL 1135
LEL+LKFG G +GRIHITEV NV+EN FS++K+GQTVTARI+AK N+ D +K
Sbjct: 1044 LELKLKFGFGLYGRIHITEVY--YGNVLENPFSSYKVGQTVTARIVAKPNESDGNRKGSQ 1101
Query: 1136 WELSIKPSMLT-VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFIL 1194
WELS++P M+T S+I + E + IGQ V GYVYKV++EW LTISR+++AQL+IL
Sbjct: 1102 WELSVRPEMVTGSSDIDD--VSENLEFKIGQCVAGYVYKVESEWVWLTISRNVRAQLYIL 1159
Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD---GISDKTV-DISN 1250
DSA EPSEL++FQ R+H+G+ V+GH+LS+N EKKLLRLV+RPF G S++ + ++ +
Sbjct: 1160 DSATEPSELEDFQNRYHVGQPVSGHILSVNMEKKLLRLVVRPFSTLSCGTSEEPLTNVVD 1219
Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
++ ++HEGDI+GGR+SKIL GVGGL+VQ+GP YG+VHFTEL + V DPLSGY E Q
Sbjct: 1220 KDLTAYVHEGDILGGRVSKILPGVGGLLVQVGPRTYGKVHFTELADTWVPDPLSGYHEEQ 1279
Query: 1311 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1370
FVKC VLE+S TV+GT HV+LSL SS +S ++ V+ K +EKIEDL P+MI
Sbjct: 1280 FVKCIVLEVSHTVKGTIHVDLSLGSSNVKLSQDSA------VNANSKCVEKIEDLHPDMI 1333
Query: 1371 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1430
V+GY+KNVTSKGCFIMLSRK+DAK+LLSNLS+ YV+ PEKEFP+GKLV GRV SVEPLS
Sbjct: 1334 VKGYIKNVTSKGCFIMLSRKIDAKILLSNLSEQYVQEPEKEFPVGKLVIGRVTSVEPLSN 1393
Query: 1431 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
RVEVTLK S + +SEI +LS HVGD+V G+IKRVES+GLFI I+NTN+VGLCH+SE
Sbjct: 1394 RVEVTLKMSTAPNIPKSEIIDLSKFHVGDVVSGRIKRVESFGLFIAIDNTNMVGLCHISE 1453
Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
+S++ ++NIE YRAGE+VK +ILKVD+E+ RISLGMK+SY + + LQ+ S+EESDE
Sbjct: 1454 ISDNRIENIEANYRAGERVKARILKVDEERHRISLGMKNSYMRGET-VLQIPSKEESDEP 1512
Query: 1551 IEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDD-EQPDMD 1609
I V + + +S ++D+E E +L+Q + RA +PPL+V LDD +Q D +
Sbjct: 1513 I--VDGMKSITSMNSSLFGTSNIDVEDEINQFPILSQAQERADIPPLDVALDDFDQFDAN 1570
Query: 1610 NGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVR 1669
N SQ++ H +E ++EK+ R KKK KEERE++IRAAEERLLE D PRT DEFERL+R
Sbjct: 1571 NANSQSEEHANEEDIVNEKHKRREKKKAKEEREKQIRAAEERLLEDDVPRTADEFERLIR 1630
Query: 1670 SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN 1729
SSPNSSF WIKYM FM+SMADVEKARSIAERAL+TINIREENEKLNIW AYFNLEN+YGN
Sbjct: 1631 SSPNSSFTWIKYMDFMVSMADVEKARSIAERALRTINIREENEKLNIWKAYFNLENKYGN 1690
Query: 1730 PPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRR 1789
P EEAV+KVFQRALQY DPKKV+LALLG+YERTEQ+ LADELL KM KKFKHSCKVWLRR
Sbjct: 1691 PREEAVMKVFQRALQYNDPKKVYLALLGMYERTEQHNLADELLNKMTKKFKHSCKVWLRR 1750
Query: 1790 VQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYP 1849
+Q LLKQ ++G+Q V+ RA LSLP+HKHIKF SQTAILEFK G DRGRSMFE IL EYP
Sbjct: 1751 IQSLLKQNKDGIQPVIDRASLSLPKHKHIKFFSQTAILEFKVGFPDRGRSMFEKILREYP 1810
Query: 1850 KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIE 1909
KRTDLWS+YLDQEI+ D D+I LFERA+SLSLPPKKMKFLFKKYL+YE S G++ERIE
Sbjct: 1811 KRTDLWSVYLDQEIQHKDEDIIHALFERAVSLSLPPKKMKFLFKKYLDYEMSQGDQERIE 1870
Query: 1910 YVKQKAMEYVES 1921
VK+KA+EYVES
Sbjct: 1871 SVKRKAIEYVES 1882
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449453908|ref|XP_004144698.1| PREDICTED: protein RRP5 homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2355 bits (6104), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1224/1950 (62%), Positives = 1495/1950 (76%), Gaps = 78/1950 (4%)
Query: 1 MAASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGH 60
MA SRKSQ DG KFNK SK F NSKK+ ++ + + ++L +DDVP FPRGGG
Sbjct: 1 MAPPSRKSQ-----DGSKFNKHSKKPF-NSKKKTSETAKPETVSLQIEDDVPDFPRGGGG 54
Query: 61 SLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLP 120
++Q + +++ AE D EF+ + + K KK+ RK DDL SL +G+ G LP
Sbjct: 55 YMSQNKGEKVRAEGDKEFQNDDLKMTTKRGKKR----RKHPSNGDDLESLLNNGVVGNLP 110
Query: 121 RYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANED 180
+YANKITLKNI+ MK WGVVAEVN+KDLVI LPGGLRGL AA+A DPIL+ E+E E
Sbjct: 111 KYANKITLKNINPRMKFWGVVAEVNKKDLVISLPGGLRGLVSAAEAFDPILEKEVEDTEH 170
Query: 181 NLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYV 240
+LLP +FHVGQLV C+VL++DDDKKE GKRKIWLSLRLS+LYK +L+ +QEGMVLT+YV
Sbjct: 171 DLLPVMFHVGQLVPCVVLKVDDDKKESGKRKIWLSLRLSMLYKDFTLDLLQEGMVLTSYV 230
Query: 241 KSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDP 300
KSIEDHGYILHFGL SFTGFLP+ + + + G LLQ VVRSID+TRKVVY SSD
Sbjct: 231 KSIEDHGYILHFGLTSFTGFLPKTKQSGKKSL-LHVGQLLQCVVRSIDKTRKVVYFSSDQ 289
Query: 301 DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 360
D VS V KDLKGISIDLL+PGMMVS RVQS LENG++LSFLTYF GTVD+FHLQN+F +
Sbjct: 290 DIVSSSVAKDLKGISIDLLIPGMMVSARVQSTLENGILLSFLTYFNGTVDMFHLQNSFHS 349
Query: 361 TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVD 420
+NWK+ YNQ+ K+NARILF+DP++RAVGLTL P+L+ N+A P HV++GDIYD +KVVRVD
Sbjct: 350 SNWKDFYNQNMKMNARILFIDPSTRAVGLTLIPHLVRNKAAPPHVRIGDIYDSAKVVRVD 409
Query: 421 RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI 480
RG GLLL++PS+P STP +V+ +KEGS VRVRILGFRHLEGLA G
Sbjct: 410 RGFGLLLEVPSSPESTPTFVS---------------FKEGSRVRVRILGFRHLEGLAIGT 454
Query: 481 LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG 540
LKASAFEG VF++SDVKPG +++ KVI VD FGAIVQFPGG+KALCPL HMSEFEI KP
Sbjct: 455 LKASAFEGPVFSYSDVKPGTLIRAKVIVVDDFGAIVQFPGGLKALCPLSHMSEFEIAKPR 514
Query: 541 KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
KKFKVGAEL+FRVLG KSKRITVTHKKTLVKSKL +LSSYA+AT L+THGWITKIEKHG
Sbjct: 515 KKFKVGAELIFRVLGCKSKRITVTHKKTLVKSKLEVLSSYADATAGLVTHGWITKIEKHG 574
Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 660
CFVRFYNGVQGFAPR ELG++PG +PSS YH+GQV+KCRI SS +S+RI+L
Sbjct: 575 CFVRFYNGVQGFAPRFELGIEPGSDPSSTYHIGQVIKCRITSSTHSSKRISL-------- 626
Query: 661 VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
+ V+LG +V+GVVD +T V +Y+ YS+G I TEHL+DH HA+ +KSV+KP
Sbjct: 627 ---NTKVELGCIVTGVVDEITETHVTLYINRTDYSRGRISTEHLSDHQAHASSIKSVLKP 683
Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
GY+FDQLLVL E +L+LSAK SLI A LPSD+SH++P S++HG++CNIIE GCFVR
Sbjct: 684 GYQFDQLLVLAIEGESLILSAKQSLIKLAHMLPSDSSHVNPYSIIHGFICNIIEAGCFVR 743
Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
FLGRLTGF+PR+KA+ Q+ L +TYY+GQSVRSN++DV+ ETGRITLSLKQS C STDA
Sbjct: 744 FLGRLTGFSPRNKAMQDQKLYLRETYYIGQSVRSNVVDVSGETGRITLSLKQSTCFSTDA 803
Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 900
SF+QE F EEKIA LQS E W E F IGSV+EG+V E D GV +SFE++ DV
Sbjct: 804 SFIQEFFSTEEKIAKLQSL----DESNWAEEFAIGSVVEGEVQEVKDIGVTISFEKYHDV 859
Query: 901 YGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKR 960
+GFI H L+G+ VE+GS IQAA+LDV+K ERLVDLSLK +D++ +S+RQ +KKR
Sbjct: 860 FGFIALHGLSGSIVETGSTIQAAVLDVSKTERLVDLSLKPELVDKW-GGSSSRQTNRKKR 918
Query: 961 KREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQS 1020
K EA KDL ++QTV+ +VE VKENYLVLSLPE+ H+IGYAS DYNTQ+ QK F GQS
Sbjct: 919 KAEAPKDLEMNQTVHTVVEAVKENYLVLSLPEFGHAIGYASTYDYNTQRLHQKHFTVGQS 978
Query: 1021 VIATVMALPSSSTAGRLLLLLKAISET-ETSSSKRAKKKSSYDVGSLVQAEITEIKPLEL 1079
V+ATV+ALP ST GRLLLLLK+ISE T SKR++K SS +VGSLV AEI +++PLE+
Sbjct: 979 VVATVVALPCPSTFGRLLLLLKSISEAIVTPGSKRSRKNSSCEVGSLVHAEIIDVQPLEM 1038
Query: 1080 RLKFGIGFHGRIHITEVNDDKSNV----VENLFSNFKIGQTVTARIIAKSNKPDMK-KSF 1134
RLKFG+G GRIH+TE SN E FSNF++GQTV ARI+A++N K K +
Sbjct: 1039 RLKFGVGLRGRIHVTEFCAQVSNTPDEASEAPFSNFRVGQTVVARIVAEANHSASKGKGY 1098
Query: 1135 LWELSIKPSMLT-VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1193
LWELS+KP +L S +G +++ E+ SIGQRVT YV V+ +WA L ++R + AQLFI
Sbjct: 1099 LWELSVKPEVLKDFSAVGGEIVNEDLGFSIGQRVTAYVSNVNGDWAWLAVTRRVSAQLFI 1158
Query: 1194 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR---PFQDGISD----KTV 1246
LDS+ EPSELQEF + F++GKAV+G++ +I EKK+LRLVL G SD K
Sbjct: 1159 LDSSSEPSELQEFSKHFYVGKAVSGYISNIIGEKKILRLVLHHLSAISSGKSDEENSKIS 1218
Query: 1247 DISNDNMQTFI---HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPL 1303
++ D + I +EGDIVGGRISKIL GVGGL+VQIGPHL+GRVH+TEL + V DPL
Sbjct: 1219 NLPTDVCKKVICHLNEGDIVGGRISKILPGVGGLLVQIGPHLFGRVHYTELTDCLVPDPL 1278
Query: 1304 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1363
SGY EGQFVKCKV+EI+ V+GT H++LSLRSS + N + + G+ KIE
Sbjct: 1279 SGYKEGQFVKCKVIEITHAVKGTTHIDLSLRSSAGILCQKNIECSNHENIASGR--VKIE 1336
Query: 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1423
D+ +M VQGYVKN++ KGCFIMLSR L+AK+LLSNLSDGY+++PEKEFP GKLV GR+L
Sbjct: 1337 DIHAHMEVQGYVKNISPKGCFIMLSRGLEAKILLSNLSDGYIDNPEKEFPTGKLVRGRIL 1396
Query: 1424 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1483
SVEPLSKRVEVTLK+ A + N+L + GDI+ G+IKRVES+GLFI+I+NT++V
Sbjct: 1397 SVEPLSKRVEVTLKSVTETGALRGSNNDLRSFSAGDIISGRIKRVESFGLFISIDNTDVV 1456
Query: 1484 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSS 1543
GLCHVSE+S+D V+++E Y AG+ VK K+LKVD+++ RI+LGMK SY + L +
Sbjct: 1457 GLCHVSEVSDDPVESLEFRYHAGDTVKAKVLKVDEKRHRIALGMKRSYI-GERSELCTNM 1515
Query: 1544 EEESDEAIEE---VGSYNRSSLLENSSVAVQDM-----DMESEDGGSLVLAQIESRASVP 1595
EEE ++A + +G S ++SS +DM ++E E L LA ESRA VP
Sbjct: 1516 EEEHEDAADGDNFIGETRLSMDPDSSSTKFKDMDDDFDNIEPEQ--PLRLA--ESRALVP 1571
Query: 1596 PLEVNLDD-EQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLE 1654
LEV LDD ++ DM S+N+ T + EKN+R KKK KEERE E+RAAEERLL+
Sbjct: 1572 SLEVTLDDIDETDMVTLQSENKELTSGTDS-KEKNDRREKKKAKEEREMEVRAAEERLLQ 1630
Query: 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL 1714
++P T DEFE+LVRSSPNSSFVWIKYM F ADVEKARSIAERAL+TINIREENEKL
Sbjct: 1631 NNSPTTVDEFEKLVRSSPNSSFVWIKYMDFF--KADVEKARSIAERALRTINIREENEKL 1688
Query: 1715 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYK 1774
N+W+AYFNLENEYGNP E+AV K+FQRALQ DPKKVHLALLG+YERT Q+ LADELL K
Sbjct: 1689 NVWLAYFNLENEYGNPKEDAVTKIFQRALQCNDPKKVHLALLGMYERTNQDNLADELLDK 1748
Query: 1775 MIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1834
MIK+FKHSCKVWLRR++ L K++Q +Q++V RALL LP+ KHIK+ISQTAILEFK GVA
Sbjct: 1749 MIKRFKHSCKVWLRRMESLFKKKQVEIQSIVNRALLCLPKRKHIKYISQTAILEFKCGVA 1808
Query: 1835 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1894
DRGRSMFEGIL EYPKRTDLWSIYLDQEIRLGD D+IR LFERAISLSL PKKMKFLFKK
Sbjct: 1809 DRGRSMFEGILREYPKRTDLWSIYLDQEIRLGDKDMIRALFERAISLSLAPKKMKFLFKK 1868
Query: 1895 YLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
YLEYEKSVG+EERIE VKQKA+EYVE+TLA
Sbjct: 1869 YLEYEKSVGDEERIESVKQKALEYVENTLA 1898
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240255326|ref|NP_187803.4| RNA binding protein [Arabidopsis thaliana] gi|332641610|gb|AEE75131.1| RNA binding protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2304 bits (5970), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1196/1905 (62%), Positives = 1484/1905 (77%), Gaps = 66/1905 (3%)
Query: 39 EAQDLALPPDDDVPVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTER 98
EA L L +DVP FPRGGG SL+++ER++++ EVDAEF+A ER K K K+++
Sbjct: 39 EAMALQL---EDVPDFPRGGGTSLSKKEREKLYEEVDAEFDADER---VSKKSKGGKSKK 92
Query: 99 KANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLR 158
+ +DDLG LFG G+ GK PRYANKIT KNIS GMKL GVV EVN+KD+VI LPGGLR
Sbjct: 93 RIPSDLDDLGLLFGGGLHGKRPRYANKITTKNISPGMKLLGVVTEVNQKDIVISLPGGLR 152
Query: 159 GLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRL 218
GL RA++ D D IE +E+ LL IF VGQLV CIVL+LDDDKKE GKRKIWLSLRL
Sbjct: 153 GLVRASEVSD-FTDRGIEDDENELLGDIFSVGQLVPCIVLELDDDKKEAGKRKIWLSLRL 211
Query: 219 SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLP-RNNLAENSGIDVKPG 277
SLL+KG S ++ Q GMV +A VKSIEDHG ILHFGLPS TGF+ ++ + SG+ K G
Sbjct: 212 SLLHKGFSFDSFQLGMVFSANVKSIEDHGSILHFGLPSITGFIEISDDGNQESGM--KTG 269
Query: 278 LLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGV 337
L+QGVV IDR RK+V+LSSDPD+V+KC+TKDL G+S DLL+PGMMV+ RVQS+LENG+
Sbjct: 270 QLIQGVVTKIDRDRKIVHLSSDPDSVAKCLTKDLSGMSFDLLIPGMMVNARVQSVLENGI 329
Query: 338 MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH 397
+ FLTYF GTVD+FHL+N +WK++YNQ+K VNARILF+DP+SRAVGLTL+P+++
Sbjct: 330 LFDFLTYFNGTVDLFHLKNPLSNKSWKDEYNQNKTVNARILFIDPSSRAVGLTLSPHVVC 389
Query: 398 NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY 457
N+APP HV GDI+D++KVVR+D+ GLLL++PS P TPAYV+ +
Sbjct: 390 NKAPPLHVFSGDIFDEAKVVRIDKS-GLLLELPSKPTPTPAYVS---------------F 433
Query: 458 KEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ 517
KEG+ +RVR+LG + +EGLA G LK SAFEG VFTHSDVKPGMV K KVI+VD+FGAIVQ
Sbjct: 434 KEGNHIRVRVLGLKQMEGLAVGTLKESAFEGPVFTHSDVKPGMVTKAKVISVDTFGAIVQ 493
Query: 518 FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAIL 577
F GG+KA+CPL HMSEFE+ KP KKFKVGAELVFRVLG KSKRITVT+KKTLVKSKL IL
Sbjct: 494 FSGGLKAMCPLRHMSEFEVTKPRKKFKVGAELVFRVLGCKSKRITVTYKKTLVKSKLPIL 553
Query: 578 SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 637
SSY +AT+ L+THGWITKIEKHGCFVRFYNGVQGF PR ELGL+PG +P S++HVG+VVK
Sbjct: 554 SSYTDATEGLVTHGWITKIEKHGCFVRFYNGVQGFVPRFELGLEPGSDPDSVFHVGEVVK 613
Query: 638 CRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKG 697
CR+ S++ ++RI L +D +KLGS+VSG++D +T AV+V V +K KG
Sbjct: 614 CRVTSAVHGTQRITL-----------NDSIKLGSIVSGIIDTITSQAVIVRVKSKSVVKG 662
Query: 698 TIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDAS 757
TI EHLADH E A ++ S+++PGYE D+LLVLD E +N+ LS+KYSLI A++LPSD +
Sbjct: 663 TISAEHLADHHEQAKLIMSLLRPGYELDKLLVLDIEGNNMALSSKYSLIKLAEELPSDFN 722
Query: 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
+ PNSVVHGYVCN+IE GCFVRFLGRLTGFAPRSKA+D +AD+S++++VGQSVR+NI+
Sbjct: 723 QLQPNSVVHGYVCNLIENGCFVRFLGRLTGFAPRSKAIDDPKADVSESFFVGQSVRANIV 782
Query: 818 DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
DVN E RITLSLKQS C+S DASF+QE+FL++EKI+ LQSS S+ WVE F IGS+
Sbjct: 783 DVNQEKSRITLSLKQSSCASVDASFVQEYFLMDEKISDLQSSDITKSDCSWVEKFSIGSL 842
Query: 878 IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
I+G + E ND GVVV+F+ ++V GFI H + GAT+ GSV+ A +LD+++AERLVDLS
Sbjct: 843 IKGTIQEQNDLGVVVNFDNINNVLGFIPQHHMGGATLVPGSVVNAVVLDISRAERLVDLS 902
Query: 938 LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI 997
L+ ++ + SN + KKKRKR SK+L VHQ V+A+VEIVKE +LVLS+PE+ ++I
Sbjct: 903 LRPELLNNLTKEVSN--SSKKKRKRGISKELEVHQRVSAVVEIVKEQHLVLSIPEHGYTI 960
Query: 998 GYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISET-ETSSSKRAK 1056
GYASVSDYNTQK P KQF GQSV+A+V A+ + T+GRLLLLL ++S T ETS SKRAK
Sbjct: 961 GYASVSDYNTQKLPVKQFSTGQSVVASVKAVQNPLTSGRLLLLLDSVSGTSETSRSKRAK 1020
Query: 1057 KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQT 1116
KKSS +VGS+V AEITEIKP ELR+ FG F GRIHITEV + ++ + F+ F++GQ+
Sbjct: 1021 KKSSCEVGSVVHAEITEIKPFELRVNFGNSFRGRIHITEVLVNDASTSDEPFAKFRVGQS 1080
Query: 1117 VTARIIAKSNKPDMKKSFLWELSIKPSMLT-VSEIGSKLLFEECDVSIGQRVTGYVYKVD 1175
++AR++AK D+KK+ LWELS+KP+ML SE E+ + + GQ V GYVYKVD
Sbjct: 1081 ISARVVAKPCHTDIKKTQLWELSVKPAMLKDSSEFNDTQESEQLEFAAGQCVIGYVYKVD 1140
Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
EW L +SR++ A++FILD++ + EL+EF+RRF IGKAV+G+VL+ NKEKK LRLV R
Sbjct: 1141 KEWVWLAVSRNVTARIFILDTSCKAHELEEFERRFPIGKAVSGYVLTYNKEKKTLRLVQR 1200
Query: 1236 PF-------QDGISDKT----VDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1284
P +G KT I D+ FIHEGDI+GGRISKIL GVGGL VQ+GP+
Sbjct: 1201 PLLFIHKSIANGGGSKTDKPDSSIPGDDDTLFIHEGDILGGRISKILPGVGGLRVQLGPY 1260
Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1344
++GRVHFTE+ + V DPL G+ EGQFVKCKVLEIS + +GT+ +ELSLR+SLDGMSS +
Sbjct: 1261 VFGRVHFTEINDSWVPDPLDGFREGQFVKCKVLEISSSSKGTWQIELSLRTSLDGMSSAD 1320
Query: 1345 --SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1402
S DL + D K E+IEDLSP+M VQGYVKN SKGCFI+LSR ++AKV LSNL D
Sbjct: 1321 HLSEDLKNN-DNVCKRFERIEDLSPDMGVQGYVKNTMSKGCFIILSRTVEAKVRLSNLCD 1379
Query: 1403 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1462
+V+ PEKEFP+GKLV GRVL+VEPLSKR+EVTLKT ++ +SE +L LHVGD++
Sbjct: 1380 TFVKEPEKEFPVGKLVTGRVLNVEPLSKRIEVTLKTVNAGGRPKSESYDLKKLHVGDMIS 1439
Query: 1463 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1522
G+I+RVE +GLFI I+ T +VGLCH+S+LS+D ++N++ Y+AGE V+ KILK+D+EK+R
Sbjct: 1440 GRIRRVEPFGLFIDIDQTGMVGLCHISQLSDDRMENVQARYKAGESVRAKILKLDEEKKR 1499
Query: 1523 ISLGMKSSYFKN-DADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGG 1581
ISLGMKSSY N D D Q SE+ + + + L AV D + GG
Sbjct: 1500 ISLGMKSSYLMNGDDDKAQPLSEDNTSMECDPINDPKSEVL-----AAVDDFGFQETSGG 1554
Query: 1582 -SLVLAQIESRASVPPLEVNLDD-EQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKE 1639
SLVLAQ+ESRAS+PPLEV+LDD E+ D D+ SQNQ A DEK+ R K+K+KE
Sbjct: 1555 TSLVLAQVESRASIPPLEVDLDDIEETDFDS--SQNQEKLLGANK-DEKSKRREKQKDKE 1611
Query: 1640 EREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAE 1699
ERE++I+AAE RLLE AP DEFE+LVRSSPNSSFVWIKYMAFMLS+AD+EKARSIAE
Sbjct: 1612 EREKKIQAAEGRLLEHHAPENADEFEKLVRSSPNSSFVWIKYMAFMLSLADIEKARSIAE 1671
Query: 1700 RALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLY 1759
RAL+TINIREE EKLNIWVAYFNLENE+GNPPEE+V KVF+RA QYCDPKKV+LALLG+Y
Sbjct: 1672 RALRTINIREEEEKLNIWVAYFNLENEHGNPPEESVKKVFERARQYCDPKKVYLALLGVY 1731
Query: 1760 ERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIK 1819
ERTEQ KLAD+LL +MIKKFK SCK+WLR++Q LKQ +E +Q+VV RALL LPRHKHIK
Sbjct: 1732 ERTEQYKLADKLLDEMIKKFKQSCKIWLRKIQSSLKQNEEAIQSVVNRALLCLPRHKHIK 1791
Query: 1820 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1879
FISQTAILEFK GVADRGRS+FEG+L EYPKRTDLWS+YLDQEIRLG+ D+IR LFERAI
Sbjct: 1792 FISQTAILEFKCGVADRGRSLFEGVLREYPKRTDLWSVYLDQEIRLGEDDVIRSLFERAI 1851
Query: 1880 SLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
SLSLPPKKMKFLFKK+LEYEKSVG+EER+EYVKQ+AMEY STLA
Sbjct: 1852 SLSLPPKKMKFLFKKFLEYEKSVGDEERVEYVKQRAMEYANSTLA 1896
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|10998136|dbj|BAB03107.1| pre-rRNA processing protein RRP5 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2241 bits (5806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1144/1809 (63%), Positives = 1416/1809 (78%), Gaps = 63/1809 (3%)
Query: 135 MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVS 194
MKL GVV EVN+KD+VI LPGGLRGL RA++ D D IE +E+ LL IF VGQLV
Sbjct: 1 MKLLGVVTEVNQKDIVISLPGGLRGLVRASEVSD-FTDRGIEDDENELLGDIFSVGQLVP 59
Query: 195 CIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL 254
CIVL+LDDDKKE GKRKIWLSLRLSLL+KG S ++ Q GMV +A VKSIEDHG ILHFGL
Sbjct: 60 CIVLELDDDKKEAGKRKIWLSLRLSLLHKGFSFDSFQLGMVFSANVKSIEDHGSILHFGL 119
Query: 255 PSFTGFLP-RNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKG 313
PS TGF+ ++ + SG+ K G L+QGVV IDR RK+V+LSSDPD+V+KC+TKDL G
Sbjct: 120 PSITGFIEISDDGNQESGM--KTGQLIQGVVTKIDRDRKIVHLSSDPDSVAKCLTKDLSG 177
Query: 314 ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKV 373
+S DLL+PGMMV+ RVQS+LENG++ FLTYF GTVD+FHL+N +WK++YNQ+K V
Sbjct: 178 MSFDLLIPGMMVNARVQSVLENGILFDFLTYFNGTVDLFHLKNPLSNKSWKDEYNQNKTV 237
Query: 374 NARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTP 433
NARILF+DP+SRAVGLTL+P+++ N+APP HV GDI+D++KVVR+D+ GLLL++PS P
Sbjct: 238 NARILFIDPSSRAVGLTLSPHVVCNKAPPLHVFSGDIFDEAKVVRIDKS-GLLLELPSKP 296
Query: 434 VSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTH 493
TPAY D A +EV KLEKK+KEG+ +RVR+LG + +EGLA G LK SAFEG VFTH
Sbjct: 297 TPTPAYTY--DAAGDEVTKLEKKFKEGNHIRVRVLGLKQMEGLAVGTLKESAFEGPVFTH 354
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
SDVKPGMV K KVI+VD+FGAIVQF GG+KA+CPL HMSEFE+ KP KKFKVGAELVFRV
Sbjct: 355 SDVKPGMVTKAKVISVDTFGAIVQFSGGLKAMCPLRHMSEFEVTKPRKKFKVGAELVFRV 414
Query: 554 LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
LG KSKRITVT+KKTLVKSKL ILSSY +AT+ L+THGWITKIEKHGCFVRFYNGVQGF
Sbjct: 415 LGCKSKRITVTYKKTLVKSKLPILSSYTDATEGLVTHGWITKIEKHGCFVRFYNGVQGFV 474
Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLV 673
PR ELGL+PG +P S++HVG+VVKCR+ S++ ++RI LSFM+KP+ VSEDD +KLGS+V
Sbjct: 475 PRFELGLEPGSDPDSVFHVGEVVKCRVTSAVHGTQRITLSFMIKPSSVSEDDSIKLGSIV 534
Query: 674 SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNE 733
SG++D +T AV+V V +K KGTI EHLADH E A ++ S+++PGYE D+LLVLD E
Sbjct: 535 SGIIDTITSQAVIVRVKSKSVVKGTISAEHLADHHEQAKLIMSLLRPGYELDKLLVLDIE 594
Query: 734 SSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 793
+N+ LS+KYSLI A++LPSD + + PNSVVHGYVCN+IE GCFVRFLGRLTGFAPRSK
Sbjct: 595 GNNMALSSKYSLIKLAEELPSDFNQLQPNSVVHGYVCNLIENGCFVRFLGRLTGFAPRSK 654
Query: 794 AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKI 853
A+D +AD+S++++VGQSVR+NI+DVN E RITLSLKQS C+S DASF+QE+FL++EKI
Sbjct: 655 AIDDPKADVSESFFVGQSVRANIVDVNQEKSRITLSLKQSSCASVDASFVQEYFLMDEKI 714
Query: 854 AMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGAT 913
+ LQSS S+ WVE F IGS+I+G + E ND GVVV+F+ ++V GFI H + GAT
Sbjct: 715 SDLQSSDITKSDCSWVEKFSIGSLIKGTIQEQNDLGVVVNFDNINNVLGFIPQHHMGGAT 774
Query: 914 VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
+ GSV+ A +LD+++AERLVDLSL+ ++ + SN + KKKRKR SK+L VHQ
Sbjct: 775 LVPGSVVNAVVLDISRAERLVDLSLRPELLNNLTKEVSN--SSKKKRKRGISKELEVHQR 832
Query: 974 VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSST 1033
V+A+VEIVKE +LVLS+PE+ ++IGYASVSDYNTQK P KQF GQSV+A+V A+ + T
Sbjct: 833 VSAVVEIVKEQHLVLSIPEHGYTIGYASVSDYNTQKLPVKQFSTGQSVVASVKAVQNPLT 892
Query: 1034 AGRLLLLLKAISET-ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIH 1092
+GRLLLLL ++S T ETS SKRAKKKSS +VGS+V AE
Sbjct: 893 SGRLLLLLDSVSGTSETSRSKRAKKKSSCEVGSVVHAE---------------------- 930
Query: 1093 ITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLT-VSEIG 1151
VND ++ + F+ F++GQ+++AR++AK D+KK+ LWELS+KP+ML SE
Sbjct: 931 ---VND--ASTSDEPFAKFRVGQSISARVVAKPCHTDIKKTQLWELSVKPAMLKDSSEFN 985
Query: 1152 SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1211
E+ + + GQ V GYVYKVD EW L +SR++ A++FILD++ + EL+EF+RRF
Sbjct: 986 DTQESEQLEFAAGQCVIGYVYKVDKEWVWLAVSRNVTARIFILDTSCKAHELEEFERRFP 1045
Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPF-------QDGISDKT----VDISNDNMQTFIHEG 1260
IGKAV+G+VL+ NKEKK LRLV RP +G KT I D+ FIHEG
Sbjct: 1046 IGKAVSGYVLTYNKEKKTLRLVQRPLLFIHKSIANGGGSKTDKPDSSIPGDDDTLFIHEG 1105
Query: 1261 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEIS 1320
DI+GGRISKIL GVGGL VQ+GP+++GRVHFTE+ + V DPL G+ EGQFVKCKVLEIS
Sbjct: 1106 DILGGRISKILPGVGGLRVQLGPYVFGRVHFTEINDSWVPDPLDGFREGQFVKCKVLEIS 1165
Query: 1321 RTVRGTFHVELSLRSSLDGMSSTN--SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1378
+ +GT+ +ELSLR+SLDGMSS + S DL + D K E+IEDLSP+M VQGYVKN
Sbjct: 1166 SSSKGTWQIELSLRTSLDGMSSADHLSEDLKNN-DNVCKRFERIEDLSPDMGVQGYVKNT 1224
Query: 1379 TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438
SKGCFI+LSR ++AKV LSNL D +V+ PEKEFP+GKLV GRVL+VEPLSKR+EVTLKT
Sbjct: 1225 MSKGCFIILSRTVEAKVRLSNLCDTFVKEPEKEFPVGKLVTGRVLNVEPLSKRIEVTLKT 1284
Query: 1439 SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1498
++ +SE +L LHVGD++ G+I+RVE +GLFI I+ T +VGLCH+S+LS+D ++N
Sbjct: 1285 VNAGGRPKSESYDLKKLHVGDMISGRIRRVEPFGLFIDIDQTGMVGLCHISQLSDDRMEN 1344
Query: 1499 IETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN-DADNLQMSSEEESDEAIEEVGSY 1557
++ Y+AGE V+ KILK+D+EK+RISLGMKSSY N D D Q SE+ + + +
Sbjct: 1345 VQARYKAGESVRAKILKLDEEKKRISLGMKSSYLMNGDDDKAQPLSEDNTSMECDPINDP 1404
Query: 1558 NRSSLLENSSVAVQDMDMESEDGG-SLVLAQIESRASVPPLEVNLDD-EQPDMDNGISQN 1615
L AV D + GG SLVLAQ+ESRAS+PPLEV+LDD E+ D D+ SQN
Sbjct: 1405 KSEVL-----AAVDDFGFQETSGGTSLVLAQVESRASIPPLEVDLDDIEETDFDS--SQN 1457
Query: 1616 QGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSS 1675
Q A DEK+ R K+K+KEERE++I+AAE RLLE AP DEFE+LVRSSPNSS
Sbjct: 1458 QEKLLGANK-DEKSKRREKQKDKEEREKKIQAAEGRLLEHHAPENADEFEKLVRSSPNSS 1516
Query: 1676 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1735
FVWIKYMAFMLS+AD+EKARSIAERAL+TINIREE EKLNIWVAYFNLENE+GNPPEE+V
Sbjct: 1517 FVWIKYMAFMLSLADIEKARSIAERALRTINIREEEEKLNIWVAYFNLENEHGNPPEESV 1576
Query: 1736 VKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK 1795
KVF+RA QYCDPKKV+LALLG+YERTEQ KLAD+LL +MIKKFK SCK+WLR++Q LK
Sbjct: 1577 KKVFERARQYCDPKKVYLALLGVYERTEQYKLADKLLDEMIKKFKQSCKIWLRKIQSSLK 1636
Query: 1796 QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLW 1855
Q +E +Q+VV RALL LPRHKHIKFISQTAILEFK GVADRGRS+FEG+L EYPKRTDLW
Sbjct: 1637 QNEEAIQSVVNRALLCLPRHKHIKFISQTAILEFKCGVADRGRSLFEGVLREYPKRTDLW 1696
Query: 1856 SIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKA 1915
S+YLDQEIRLG+ D+IR LFERAISLSLPPKKMKFLFKK+LEYEKSVG+EER+EYVKQ+A
Sbjct: 1697 SVYLDQEIRLGEDDVIRSLFERAISLSLPPKKMKFLFKKFLEYEKSVGDEERVEYVKQRA 1756
Query: 1916 MEYVESTLA 1924
MEY STLA
Sbjct: 1757 MEYANSTLA 1765
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297833988|ref|XP_002884876.1| S1 RNA-binding domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297330716|gb|EFH61135.1| S1 RNA-binding domain-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2137 bits (5536), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1090/1714 (63%), Positives = 1347/1714 (78%), Gaps = 63/1714 (3%)
Query: 235 VLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVV 294
V +A VKS+EDHGYILHFGLPS +GF+ +N + +K G L+QGVV IDR RKVV
Sbjct: 169 VFSANVKSVEDHGYILHFGLPSISGFIEISNDGNQESV-MKTGQLIQGVVTKIDRDRKVV 227
Query: 295 YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 354
+LSSDPD+V+KC+TKDL G+S DLL+PGMMV+ RVQS+LENG++ FLTYF GTVD+FHL
Sbjct: 228 HLSSDPDSVAKCLTKDLNGMSFDLLIPGMMVNARVQSVLENGILFDFLTYFNGTVDLFHL 287
Query: 355 QNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQS 414
+N +WK++YNQ+K VNARILF+DP+SRAVGLTLNP+L+ N+APP HV GDI+D++
Sbjct: 288 KNPLSNKSWKDEYNQNKMVNARILFIDPSSRAVGLTLNPHLVCNKAPPLHVFSGDIFDEA 347
Query: 415 KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 474
KVVR+D+ GLLL++PS PV PAY++ +KEG+ +RVRILG + +E
Sbjct: 348 KVVRIDKS-GLLLELPSKPVPNPAYIS---------------FKEGNHIRVRILGLKQME 391
Query: 475 GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 534
GLA G LK SAFEG VFTHSDV+PGMV K KVI+VD+FGAIVQF GG+KA+CPL HMSEF
Sbjct: 392 GLAIGTLKESAFEGPVFTHSDVRPGMVTKAKVISVDTFGAIVQFAGGLKAMCPLRHMSEF 451
Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
E++KP KKFKVGAELVFRVLG KSKRITVT+KKTLVKSKL ILSSY +AT+ L+THGWIT
Sbjct: 452 EVMKPRKKFKVGAELVFRVLGCKSKRITVTYKKTLVKSKLPILSSYTDATEGLVTHGWIT 511
Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
KIEKHGCFVRFYNGVQGF PR ELGL+PG +P S++HVG+VVKCR+ S++ SRRI L
Sbjct: 512 KIEKHGCFVRFYNGVQGFVPRFELGLEPGSDPDSVFHVGEVVKCRVTSAVHGSRRITL-- 569
Query: 655 MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714
+D +KLGS+VSG+VD +T AV+V V +KG KGTI TEHLADH + A +M
Sbjct: 570 ---------NDSIKLGSIVSGIVDSITSQAVIVRVKSKGVLKGTISTEHLADHHDQAKLM 620
Query: 715 KSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 774
S+++PGYE D+LLVLD E +NL LS+KYSLI A++LPSD + + PNSVVHGYVCN+IE
Sbjct: 621 MSLLRPGYELDKLLVLDIEGNNLSLSSKYSLIKLAEELPSDFNQLQPNSVVHGYVCNLIE 680
Query: 775 TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
GCFVRFLGRLTGFAPRSKA+D RADLS++++VGQSVR+NI+DVN E RITLSLKQS
Sbjct: 681 NGCFVRFLGRLTGFAPRSKAIDDPRADLSESFFVGQSVRANIVDVNQEKSRITLSLKQSS 740
Query: 835 CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
C+S DASF+QE+FL++EKI+ LQSS SE WVE F IGS+I+G + E ND GVVV+F
Sbjct: 741 CASVDASFVQEYFLMDEKISDLQSSDITKSEYSWVEKFSIGSLIKGTLQEQNDLGVVVNF 800
Query: 895 EEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQ 954
+ ++V GFI H + GAT+ GSV+ A +LD+++AERLVDLSL+ I+ + SN Q
Sbjct: 801 DNINNVLGFIPQHHMGGATMVPGSVVNAVVLDISRAERLVDLSLRPELINNLTKEVSNSQ 860
Query: 955 AQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQ 1014
KKKRKR SK+L VHQ V+A+VEIVKE +LVLS+PE+ +++GYAS+SDYNTQK P KQ
Sbjct: 861 L-KKKRKRGISKELEVHQRVSAVVEIVKEQHLVLSIPEHGYTVGYASLSDYNTQKLPVKQ 919
Query: 1015 FLNGQSVIATVMALPSSSTAGRLLLLLKAISET-ETSSSKRAKKKSSYDVGSLVQAEITE 1073
F GQSV+A+V A+ + T+GRLLLLL ++S T ETS SKRAKKKSS +VGS+V AEITE
Sbjct: 920 FSTGQSVVASVEAVQNPLTSGRLLLLLDSVSGTSETSRSKRAKKKSSCEVGSVVHAEITE 979
Query: 1074 IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 1133
IKP ELR+ FG F GRIHITEVND ++ + F+ F++GQ+++AR+++K D+KKS
Sbjct: 980 IKPFELRVNFGNSFRGRIHITEVND--ASTSDEPFAKFRVGQSMSARVVSKPCHTDIKKS 1037
Query: 1134 FLWELSIKPSML-TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1192
LWELS+KP+ML SE+ E+ + GQ V GYVYKVD EW L ISR++ A++F
Sbjct: 1038 QLWELSVKPAMLRDSSELNDIQESEQLEFVAGQCVNGYVYKVDKEWVWLAISRNVTARIF 1097
Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD-------GISDKT 1245
ILD+A E EL+EF+R F IGKAV+G+VL+ NKEK+ LRLV RP D G KT
Sbjct: 1098 ILDTACEAHELEEFERHFPIGKAVSGYVLTYNKEKRTLRLVQRPLLDIHKSIANGGGSKT 1157
Query: 1246 ----VDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1301
+ I D+ FIHEGDI+GGRISKIL GVGGL VQIGP+++GRVHFTE+ ++ V +
Sbjct: 1158 DKLDISIPGDDGTLFIHEGDILGGRISKILPGVGGLRVQIGPYVFGRVHFTEINDLWVPN 1217
Query: 1302 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN--SSDLSTDVDTPGKHL 1359
PL G+ EGQFVKCKVLEIS + +GT+ +ELSLR+SLDGMSS + S DL+ + D K
Sbjct: 1218 PLDGFREGQFVKCKVLEISSSSKGTWQIELSLRTSLDGMSSADHISEDLNNN-DNVCKRF 1276
Query: 1360 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1419
E+ EDLS +M VQGYVKN SKGCFI+LSRK++AKV LSNL D +V+ PEKEFP+GKLV
Sbjct: 1277 ERFEDLSLDMGVQGYVKNTMSKGCFIILSRKVEAKVKLSNLCDTFVKEPEKEFPVGKLVT 1336
Query: 1420 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1479
GRVL+VEPLSKR+EVTLKT ++ +SE ++ LHVGD++ G+IKRVE YGLFI I+
Sbjct: 1337 GRVLNVEPLSKRIEVTLKTVNAGGQPKSESYDMKKLHVGDMISGRIKRVEPYGLFIDIDQ 1396
Query: 1480 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD-N 1538
+VGLCH+++LS+D ++N++ Y+AGE V KILK+D+EKRRISLGMKSSY N D
Sbjct: 1397 IGMVGLCHITQLSDDRIENVQARYKAGESVSAKILKLDEEKRRISLGMKSSYLMNGDDVK 1456
Query: 1539 LQMSSEEESDEAIEEVGSYNRSSLLENSSV--AVQDMDMESEDGG-----SLVLAQIESR 1591
Q SEE++DE E N N+ V AV D + GG SLVLAQ++SR
Sbjct: 1457 AQPPSEEKADETSMECDPINDP----NTEVLAAVGDFGFQETSGGRHSGASLVLAQVDSR 1512
Query: 1592 ASVPPLEVNLDD-EQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEE 1650
AS+PPLEV+LDD E+ D DN +QNQ A DEK+ R K+K+KEERE++I+AAE
Sbjct: 1513 ASIPPLEVDLDDIEEMDFDN--NQNQEKLLGADK-DEKSKRREKQKDKEEREKKIQAAEG 1569
Query: 1651 RLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREE 1710
RLLE AP + DEFE+LVRSSPNSSFVWIKYMAFMLS+AD+EKARSIAERAL+TINIREE
Sbjct: 1570 RLLEHHAPESADEFEKLVRSSPNSSFVWIKYMAFMLSLADIEKARSIAERALRTINIREE 1629
Query: 1711 NEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADE 1770
EKLNIWVAYFNLENE+G+PPEEAV KVF+RA QYCDPKKV+LALLG+YERTEQ KL D+
Sbjct: 1630 EEKLNIWVAYFNLENEHGSPPEEAVKKVFERARQYCDPKKVYLALLGVYERTEQYKLVDK 1689
Query: 1771 LLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1830
LL +M+KKFK SCK+WLR++Q L+Q +EG+Q+VV RALL LPRHKHIKFISQTAILEFK
Sbjct: 1690 LLDEMVKKFKQSCKIWLRKIQSSLQQNEEGIQSVVNRALLCLPRHKHIKFISQTAILEFK 1749
Query: 1831 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKF 1890
GVADRGRS+FEG+L EYPKRTDLWS+YLDQEIRLG+VD+IR LFERAISLSLPPKKMKF
Sbjct: 1750 CGVADRGRSLFEGVLREYPKRTDLWSVYLDQEIRLGEVDVIRSLFERAISLSLPPKKMKF 1809
Query: 1891 LFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
LFKK+LEYE+SVGEEER EYVKQ+A+EY +STLA
Sbjct: 1810 LFKKFLEYERSVGEEERAEYVKQRALEYAKSTLA 1843
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222636634|gb|EEE66766.1| hypothetical protein OsJ_23484 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 2009 bits (5206), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1039/1830 (56%), Positives = 1359/1830 (74%), Gaps = 52/1830 (2%)
Query: 105 DDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAA 164
DDLGSLFG +GKLPR+AN++TLKNIS MKLWGVV EVN+KD+V+ LPGG+RG R+
Sbjct: 111 DDLGSLFGGATTGKLPRFANRVTLKNISPNMKLWGVVIEVNQKDIVVSLPGGMRGFVRSE 170
Query: 165 DALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGK--RKIWLSLRLSLLY 222
+ D + +E ++ + HVGQLV CIVL++DDD KE GK +++WLSLRLS +Y
Sbjct: 171 EVHDITSQETRKDSEGSICADVVHVGQLVPCIVLRVDDDNKE-GKVNKRVWLSLRLSRIY 229
Query: 223 KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG 282
KGLSL+ +Q+GMVLTA VKSIEDHGYILHFG+ SF+GF+P+ A+ ++ G L+Q
Sbjct: 230 KGLSLDAIQDGMVLTAQVKSIEDHGYILHFGVSSFSGFMPK---ADRESAKIESGQLIQC 286
Query: 283 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 342
VV++ID+ R++V+LSSD D +SK + KDLKG+SID L+PGMMV+ RV S+LENGVMLSFL
Sbjct: 287 VVKAIDKAREIVHLSSDEDLLSKSIIKDLKGLSIDHLIPGMMVNARVHSVLENGVMLSFL 346
Query: 343 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP 402
TYFTGT DIF+L N+FP+ +WK+DY ++KKVNARILFVDP++RAVGLTLN LL + P
Sbjct: 347 TYFTGTADIFNLSNSFPSGSWKDDYIKNKKVNARILFVDPSTRAVGLTLNQQLLRLKVPS 406
Query: 403 SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSC 462
+VK G+IYD+++V+R+D+ GL L+IPS P +P +V+I DV++++V+ +EKK+KEGS
Sbjct: 407 INVKAGEIYDKARVLRMDKRAGLFLEIPS-PTPSPGFVSIHDVSDKDVKNVEKKFKEGSM 465
Query: 463 VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 522
RVR+LG RHLEG+A G LK SAFEG VFTH+DVKPGMVV+ KV+ V+ FGAIVQF GV
Sbjct: 466 ARVRVLGVRHLEGVAIGTLKESAFEGSVFTHADVKPGMVVRAKVVTVEPFGAIVQFSSGV 525
Query: 523 KALCPLPHMSEFE-IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYA 581
KALCPLPHMSE E +VKP KKFKVG EL FRVLG KSKRITVT KK+LVKSKL +L+SYA
Sbjct: 526 KALCPLPHMSELEHVVKPPKKFKVGVELTFRVLGCKSKRITVTFKKSLVKSKLDVLASYA 585
Query: 582 EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
+A L+THGWITKIEKHGCFV+FYNGVQGF RSELGL+PG E ++YHVGQVVKCR++
Sbjct: 586 DAKIGLLTHGWITKIEKHGCFVKFYNGVQGFVSRSELGLEPGTEAENVYHVGQVVKCRVV 645
Query: 642 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
S +PASR+IN++F++ RV + D K+GS+VSGVV+ +TP AVVV V G+ KG+I
Sbjct: 646 SVVPASRKINVTFLISTNRVIQADTPKVGSIVSGVVERLTPAAVVVSV--NGFCKGSILN 703
Query: 702 EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 761
EHLADH A +K+++KPG+EF +LLVLD E NL+LSAK SLIN A +PS+ S +H
Sbjct: 704 EHLADHRGQAAQLKNLLKPGHEFSELLVLDVEGQNLVLSAKQSLINCASDIPSEISQMHA 763
Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
SV HGYVCNIIE GCFVRFLG LTGF+P+ KAVD LS +YVGQSVRS+IL+VN+
Sbjct: 764 GSVFHGYVCNIIEAGCFVRFLGHLTGFSPKDKAVDRSVEKLSNAFYVGQSVRSHILNVNA 823
Query: 822 ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 881
E+ R+ LSL+QS CSS D SF+Q +FLL++KI L+ S + S W+ F IG+++EG+
Sbjct: 824 ESARVKLSLQQSMCSSADCSFVQGYFLLDQKITELKYSDPSSSFHDWLNTFAIGNLVEGE 883
Query: 882 VHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 941
V ++GV+++F+ H DV G I HHQL ++VE GS ++ ++D++ +V++SLK+
Sbjct: 884 VGAIEEYGVILNFQSHPDVVGLIEHHQLGDSSVEVGSSVKGLVIDLSDG--VVNISLKSE 941
Query: 942 FIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS 1001
+ + ++ +KKKR R A DL +H+ VNAIVEIVKE+++VLS+PEYN++IG+A
Sbjct: 942 LV-----RSVSKVGKKKKRHRAAVMDLELHEEVNAIVEIVKESHVVLSIPEYNYAIGFAP 996
Query: 1002 VSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKS-S 1060
+ DYN+Q P + NGQ + V ++PSS GRLLLL KA + + SS + KK
Sbjct: 997 LMDYNSQLLPCCNYENGQRITVVVGSMPSSGPTGRLLLLPKASGKNSSVSSSKRAKKKSD 1056
Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 1120
+ VGSLV+AEI +IKPLEL LKFG HGRIHITEV DD SN + FS +IG++V AR
Sbjct: 1057 FKVGSLVEAEIIDIKPLELLLKFGSNLHGRIHITEVFDDDSN--DCPFSELQIGRSVQAR 1114
Query: 1121 IIAKSNKPDMK-KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1179
I+A++ K+ WELSI+PS+L E SIG V YV KVD EW
Sbjct: 1115 IVAEAEHSGKGGKNSKWELSIRPSLLQGGLEDFTPPKAELRHSIGGIVHAYVVKVDREWI 1174
Query: 1180 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL---RP 1236
LT+SR + A LFILDS+ EP EL++FQ+R+ +G+AV G ++ +N+EK+LLRL +
Sbjct: 1175 WLTVSRDVMAHLFILDSSAEPGELEKFQQRYSVGQAVKGRIIGVNREKRLLRLKALDSQS 1234
Query: 1237 FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKN 1296
+ I + +S T +GDI+GGRI KIL GVGGLV+QIGPHL+GRVH+TE+ +
Sbjct: 1235 LPENIGETQKPLSATVEHT--KQGDIIGGRIQKILPGVGGLVIQIGPHLHGRVHYTEIVD 1292
Query: 1297 ICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPG 1356
V +P+SG+ EGQFVKCKVL++SR+ G+ V+LSLRSS+ +S S L D
Sbjct: 1293 SWVQEPISGFHEGQFVKCKVLDVSRSSEGSVRVDLSLRSSM-CANSNQSRRLFDDSRIRT 1351
Query: 1357 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1416
EKI DL P V+GYVK+V SKGCFIM+SR ++A+++LSNLSD YVE+P+ +FP+G
Sbjct: 1352 SRFEKINDLCPGTEVKGYVKSVNSKGCFIMVSRTIEARIILSNLSDEYVENPQNDFPVGL 1411
Query: 1417 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1476
LV GRVLS EP S +VEV+L+ + + +S+ + S+LHVGDI+ GQ+KRVES+GLF+T
Sbjct: 1412 LVHGRVLSSEPQSGKVEVSLRKNTGSKSQKSDDISYSDLHVGDIIAGQVKRVESFGLFVT 1471
Query: 1477 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1536
I+ + LV LCHVSELS++ V +I + ++AG+K+ D+E+ R+S+GMK SY D+
Sbjct: 1472 IQGSELVALCHVSELSDEPVLDIHSCHKAGDKI-------DEERHRVSIGMKKSYIGPDS 1524
Query: 1537 DNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPP 1596
+S++E DE + E S N M + +LVL + ESRASV P
Sbjct: 1525 TG--DTSDDEDDEIVPEEISRNPV--------------MGRDRNHALVLPKPESRASVLP 1568
Query: 1597 LEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD 1656
L+V+LD+ + ++ Q + + D+K+N+ K+K +++RE EI A EER L++D
Sbjct: 1569 LQVSLDESEGSDQENDNKGQEIANGTEVDDKKSNKRLKEKARKQRELEISALEERALQRD 1628
Query: 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI 1716
P+TPDEFE+LVRSSPNSSFVWI YMAF+L +ADV+KAR++AERAL+TINIREE EKLN+
Sbjct: 1629 IPQTPDEFEKLVRSSPNSSFVWINYMAFLLDLADVDKARAVAERALRTINIREEEEKLNV 1688
Query: 1717 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1776
WVAYFNLENEYG+P E+AV K+FQRALQYCDPKKVHLALL +YERTEQ LADELL +M
Sbjct: 1689 WVAYFNLENEYGSPREDAVKKIFQRALQYCDPKKVHLALLAMYERTEQYTLADELLDRMT 1748
Query: 1777 KKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1834
K+FK SCK+WLR +Q LKQ + E ++ +V+RALLSLP+ K KF+SQTAILEFK GV
Sbjct: 1749 KRFKTSCKIWLRCIQLSLKQSKDVECIKLIVKRALLSLPQSKRRKFLSQTAILEFKCGVP 1808
Query: 1835 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1894
+ GRS FE IL EYPKRTDLWS+YLDQEIRLGD ++IR LFER LSLPPKKMKFLFKK
Sbjct: 1809 EEGRSRFELILREYPKRTDLWSVYLDQEIRLGDTEIIRALFERVTCLSLPPKKMKFLFKK 1868
Query: 1895 YLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
YLEYEKS G+EERIE+VKQKA+EYV+S+LA
Sbjct: 1869 YLEYEKSQGDEERIEHVKQKALEYVQSSLA 1898
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242043296|ref|XP_002459519.1| hypothetical protein SORBIDRAFT_02g006000 [Sorghum bicolor] gi|241922896|gb|EER96040.1| hypothetical protein SORBIDRAFT_02g006000 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 1989 bits (5152), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1034/1832 (56%), Positives = 1352/1832 (73%), Gaps = 104/1832 (5%)
Query: 105 DDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAA 164
DDLG+LFG +GKLPRYAN+IT+KNIS MKLWGVV EVN+KD+V+ LPGG+RG R+
Sbjct: 116 DDLGTLFGGATTGKLPRYANRITVKNISPNMKLWGVVIEVNQKDIVLSLPGGIRGFVRSE 175
Query: 165 DALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKG 224
D D L + +E++L + HVGQLV CIVL++DDDKKE
Sbjct: 176 DVCDIALQENRKDSENSLCAKVVHVGQLVPCIVLRVDDDKKE------------------ 217
Query: 225 LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVV 284
G VL A VKSIEDHGYILHFG+ SF+GF+ +++ EN I+ + L+ VV
Sbjct: 218 --------GKVLAAQVKSIEDHGYILHFGVSSFSGFMQKDD-KENVKIERRQ--LMHCVV 266
Query: 285 RSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTY 344
++ID+TR +V+LSSD D + K + KDLKG+SID L+PGMMV+ RV S+LENGVMLSFLTY
Sbjct: 267 KAIDKTRAIVHLSSDEDLLCKSIIKDLKGLSIDHLIPGMMVNARVHSVLENGVMLSFLTY 326
Query: 345 FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH 404
F+GTVDIF+L N+FP+ NWK+DY+++KKVNARILFVDP++RAVGLTLN +LLH PP +
Sbjct: 327 FSGTVDIFNLLNSFPSGNWKDDYSKNKKVNARILFVDPSTRAVGLTLNKHLLHLEVPPIN 386
Query: 405 VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVR 464
+K GDIYD+SKV+RVD+ GL L+IPS P +P +++I DV++++ + LEK +KEGS +R
Sbjct: 387 LKAGDIYDKSKVLRVDKKAGLFLEIPS-PTPSPGFISIHDVSDKDAKNLEK-FKEGSSLR 444
Query: 465 VRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA 524
VRILG R+LEG+A G +K SAFEG VFTH DVKPGM+V+ KV V+ FGAIVQF GVKA
Sbjct: 445 VRILGVRNLEGVAIGTVKDSAFEGSVFTHDDVKPGMLVRAKVATVEPFGAIVQFSSGVKA 504
Query: 525 LCPLPHMSEFE-IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEA 583
LCPLPHMSE E +VKP KKFKVGAEL+FRVLG KSKR+TVT+KK+LVKSKL +L+SYA+A
Sbjct: 505 LCPLPHMSELEHVVKPPKKFKVGAELLFRVLGCKSKRVTVTYKKSLVKSKLDVLASYADA 564
Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
L+THGWITKIEKHGCFV+FYNGVQGF RS+LGL+ G E ++YHVGQVVKCRI++
Sbjct: 565 KIGLVTHGWITKIEKHGCFVKFYNGVQGFVSRSDLGLEAGTEAENVYHVGQVVKCRIINV 624
Query: 644 IPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703
IPASR++N+SF++ RV D KLGS+VSGVV+ +TP AVVV V G+SKGTI EH
Sbjct: 625 IPASRKLNVSFVISHNRVIPIDTPKLGSIVSGVVERLTPAAVVVSV--NGFSKGTILNEH 682
Query: 704 LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNS 763
LADH H D E NL+LSAK+SLIN A +PS+ S +HP
Sbjct: 683 LADH--H--------------------DIEGHNLVLSAKHSLINCANDIPSEISQMHPGV 720
Query: 764 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
VVHGY+CNIIE+GCFVRFLG LTGF+P+ KAVD + LS +YVGQSVRS+IL V +ET
Sbjct: 721 VVHGYICNIIESGCFVRFLGHLTGFSPKDKAVDRRIERLSDAFYVGQSVRSHILSVTAET 780
Query: 824 GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH 883
R+ LSL+QS CSSTD+SF+Q +FLL++KIA L+ S ++ W F IGS++EG+V
Sbjct: 781 ARVKLSLQQSMCSSTDSSFIQGYFLLDQKIAALKYSSND-----WAHTFGIGSLVEGEVG 835
Query: 884 ESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFI 943
++G++++F++H DV G I HHQL G++VE GS ++ +LD++ +V+LSLK I
Sbjct: 836 AIEEYGIILNFKDHLDVVGLIEHHQLGGSSVEVGSSVKGLVLDLSDG--VVNLSLKPELI 893
Query: 944 DRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVS 1003
R +KKKR+R A DL +H+ VNA+VEI+K +YLVLS+PEYN++IG+A +
Sbjct: 894 GSVRNV-----GKKKKRQRAAVADLELHEEVNAVVEIIKGSYLVLSIPEYNYAIGFAPLM 948
Query: 1004 DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE-TETSSSKRAKKKSSYD 1062
DYN+Q P + NGQ + V +PSS ++GRL+LL KA ++ + S SKRAKKKS Y
Sbjct: 949 DYNSQLLPHHHYDNGQRITVVVGNIPSSDSSGRLILLPKASAQYSALSESKRAKKKSGYK 1008
Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
+GSLV+AEI +IKPLEL L+FG HGRIHITEV + S+ E+ FS +IGQ +TARI+
Sbjct: 1009 IGSLVEAEIIDIKPLELLLQFGGNLHGRIHITEVPEKDSD--EHPFSKLRIGQKLTARIV 1066
Query: 1123 AKSNKPDMK--KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWAL 1180
A++ +P K K+F WELSI+P ++ E +E + + V YV KVD EW
Sbjct: 1067 AEA-EPSGKSGKNFKWELSIRPCIVN-GEFDELTAQKEQKHTTNEIVRAYVVKVDKEWVW 1124
Query: 1181 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1240
LT+SR++ A LF+LDS+ EPSEL+EFQ+RF G+AV G V+++N+EK+LLRL + +
Sbjct: 1125 LTVSRNVMAHLFVLDSSSEPSELKEFQQRFSEGQAVKGRVINVNREKRLLRL--KALDNQ 1182
Query: 1241 ISDKTVD-ISNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1297
+ +D I F +GDI+GGR+ KIL GVGGLVVQIGPHL GRVH+TE+ +
Sbjct: 1183 CTQLNIDEIQQSKSSVFEQTKQGDIIGGRVQKILPGVGGLVVQIGPHLRGRVHYTEIVDS 1242
Query: 1298 CVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1357
V++PLSG+ EGQFVKCKVL +SR+ G+ V+LSLRSS + + +N+S L D+ T
Sbjct: 1243 WVTEPLSGFHEGQFVKCKVLSVSRSSEGSLRVDLSLRSS-NLIRDSNNSGLVDDLATCTS 1301
Query: 1358 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1417
+EKI+DL P ++GYVKNV SKGCFIM+SR ++A++ LSNLSD YVE+P+K+FP+G L
Sbjct: 1302 RIEKIKDLLPGTEIKGYVKNVNSKGCFIMISRMVEARITLSNLSDEYVENPQKDFPVGML 1361
Query: 1418 VAGRVLSVEPLSKRVEVTL-KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1476
V GRVLS +P S RVE +L KT+ S+ +I+ S+LHVGDI+ GQ+KRVES+GLF+T
Sbjct: 1362 VHGRVLSTDPSSGRVEASLRKTTGSKLEKLDDIS-YSDLHVGDIIDGQVKRVESFGLFVT 1420
Query: 1477 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1536
I + LVGLCHVSELS++ V +I + Y+AG+ VK KILK+D+++ R+SLGMK SYF D+
Sbjct: 1421 IRRSELVGLCHVSELSDEPVVDINSCYKAGDMVKAKILKIDEKRHRVSLGMKKSYF--DS 1478
Query: 1537 DNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPP 1596
D ++++E DE S L + SVA Q ++ + SLV + E ASVPP
Sbjct: 1479 DLTADTNDDEDDE-----------SALMDISVAPQMVEYHNR---SLVNRKAEPIASVPP 1524
Query: 1597 LEVNLDD-EQPDM-DNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLE 1654
L+V+LD+ E D+ DN ++ + + +KN++ KK+ +++RE EI A EER L+
Sbjct: 1525 LQVSLDESECSDLEDNNNNKGPEIANGTEANAKKNDKQLKKEARKQRELEISAMEERALQ 1584
Query: 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL 1714
D P+TPD+FE+LVRSSPNSSFVWIKYMA +L +ADVEKAR++AERAL+TI REE EKL
Sbjct: 1585 GDVPQTPDDFEKLVRSSPNSSFVWIKYMATLLDLADVEKARAVAERALKTIIPREEEEKL 1644
Query: 1715 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYK 1774
N+WVAYFNLENEYG+P E+AV KVFQRALQYCDPKK+HLALL +YERTEQ +LADELL +
Sbjct: 1645 NVWVAYFNLENEYGSPREDAVKKVFQRALQYCDPKKLHLALLAMYERTEQYELADELLDR 1704
Query: 1775 MIKKFKHSCKVWLRRVQRLLKQQQE--GVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1832
M K+FK SCK+WL R+Q LKQ ++ ++++V RALLSLP K IKF+SQTAILEFK G
Sbjct: 1705 MTKRFKTSCKIWLCRIQFALKQGKDVACIKSIVNRALLSLPHRKRIKFLSQTAILEFKCG 1764
Query: 1833 VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1892
V + GRS FE IL EYPKRTDLWS+YLDQEIRLGD+++IR LFER L+LPPKKM+FLF
Sbjct: 1765 VPEEGRSRFELILREYPKRTDLWSVYLDQEIRLGDIEVIRALFERVTCLTLPPKKMQFLF 1824
Query: 1893 KKYLEYEKSVGEE-ERIEYVKQKAMEYVESTL 1923
KKYL +EKS+GE+ ERI++V+QKA+EYV+S+L
Sbjct: 1825 KKYLNFEKSLGEDNERIQFVQQKAIEYVQSSL 1856
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218199275|gb|EEC81702.1| hypothetical protein OsI_25303 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 1922 bits (4978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1009/1830 (55%), Positives = 1321/1830 (72%), Gaps = 102/1830 (5%)
Query: 105 DDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAA 164
DDLGSLFG +GKLPR+AN++TLKNIS MKLWGVV EVN+KD+V+ LPGG+RG R+
Sbjct: 111 DDLGSLFGGATTGKLPRFANRVTLKNISPNMKLWGVVIEVNQKDIVVSLPGGMRGFVRSE 170
Query: 165 DALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGK--RKIWLSLRLSLLY 222
+ D + +E ++ + HVGQLV CIVL++DDD KE GK +++WLSLRLS +Y
Sbjct: 171 EVHDITSQETRKDSEGSICADVVHVGQLVPCIVLRVDDDNKE-GKVNKRVWLSLRLSRIY 229
Query: 223 KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG 282
KGLSL+ +Q+GMVLTA VKSIEDHGYILHFG+ SF+GF+P+ A+ ++ G L+Q
Sbjct: 230 KGLSLDAIQDGMVLTAQVKSIEDHGYILHFGVSSFSGFMPK---ADRESAKIESGQLIQC 286
Query: 283 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 342
VV++ID+ R++V+LSSD D +SK + KDLKG+SID L+PGMMV+ RV S+LENGVMLSFL
Sbjct: 287 VVKAIDKAREIVHLSSDEDLLSKSIIKDLKGLSIDHLIPGMMVNARVHSVLENGVMLSFL 346
Query: 343 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP 402
TYFTGT DIF+L N+FP+ +WK+DY ++KKVNARILFVDP++RAVGLTLN LL + P
Sbjct: 347 TYFTGTADIFNLSNSFPSGSWKDDYIKNKKVNARILFVDPSTRAVGLTLNQQLLRLKVPS 406
Query: 403 SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSC 462
+VK G+IYD+++V+R+D+ GL L+IPS P +P +V+I DV++++V+ +EKK+KEGS
Sbjct: 407 INVKAGEIYDKARVLRMDKRAGLFLEIPS-PTPSPGFVSIHDVSDKDVKNVEKKFKEGSM 465
Query: 463 VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 522
RVR+LG RHLEG+A G LK SAFEG VFTH+DVKPGMVV+ KV+ V+ FGAIVQF GV
Sbjct: 466 ARVRVLGVRHLEGVAIGTLKESAFEGSVFTHADVKPGMVVRAKVVTVEPFGAIVQFSSGV 525
Query: 523 KALCPLPHMSEFE-IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYA 581
KALCPLPHMSE E +VKP KKFKVG EL FRVLG KSKRITVT KK+LVKSKL +L+SYA
Sbjct: 526 KALCPLPHMSELEHVVKPPKKFKVGVELTFRVLGCKSKRITVTFKKSLVKSKLDVLASYA 585
Query: 582 EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
+A L+THGWITKIEKHGCFV+FYNGVQGF RSELGL+PG E ++YHVGQVVKCR++
Sbjct: 586 DAKIGLLTHGWITKIEKHGCFVKFYNGVQGFVSRSELGLEPGTEAENVYHVGQVVKCRVV 645
Query: 642 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
S +PASR+IN++F++ RV + D K+GS+VSGVV+ +TP AVVV V G+ KG+I
Sbjct: 646 SVVPASRKINVTFLISTNRVIQADTPKVGSIVSGVVERLTPAAVVVSV--NGFCKGSILN 703
Query: 702 EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 761
EHLADH D E NL+LSAK SLIN A +PS+ S +H
Sbjct: 704 EHLADHR----------------------DVEGQNLVLSAKQSLINCASDIPSEISQMHA 741
Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
SV HGYVCNIIE GCFVRFLG LTGF+P+ KAVD LS +YVGQSVRS+IL+VN+
Sbjct: 742 GSVFHGYVCNIIEAGCFVRFLGHLTGFSPKDKAVDRSVEKLSNAFYVGQSVRSHILNVNA 801
Query: 822 ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 881
E+ R+ LSL+QS CSS D SF+Q +FLL++KI L+ S + S W+ F IG+++EG+
Sbjct: 802 ESARVKLSLQQSMCSSADCSFVQGYFLLDQKITELKYSDPSSSFHDWLNTFAIGNLVEGE 861
Query: 882 VHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 941
V ++GV+++F+ H DV G I HHQL ++VE GS ++ ++D++ +V++SLK+
Sbjct: 862 VGAIEEYGVILNFQSHPDVVGLIEHHQLGDSSVEVGSSVKGLVIDLSDG--VVNISLKSE 919
Query: 942 FIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS 1001
+ + ++ +KKKR R A DL +H+ VNAIVEIVKE+++VLS+PEYN++IG+A
Sbjct: 920 LV-----RSVSKVGKKKKRHRAAVMDLELHEEVNAIVEIVKESHVVLSIPEYNYAIGFAP 974
Query: 1002 VSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKS-S 1060
+ DYN+Q P + NGQ + V ++PSS GRLLLL KA + + SS + KK
Sbjct: 975 LMDYNSQLLPCCNYENGQRITVVVGSMPSSGPTGRLLLLPKASGKNSSVSSSKRAKKKSD 1034
Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 1120
+ VGSLV+AEI +IKPLEL LKFG HGRIHITEV DD SN + FS +IG++V AR
Sbjct: 1035 FKVGSLVEAEIIDIKPLELLLKFGSNLHGRIHITEVFDDDSN--DCPFSELQIGRSVQAR 1092
Query: 1121 IIAKSNKPDMK-KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1179
I+A++ K+ WELSI+PS+L E SIG V YV KVD EW
Sbjct: 1093 IVAEAEHSGKGGKNSKWELSIRPSLLQGGLEDFTPPKAELRHSIGGIVHAYVVKVDREWI 1152
Query: 1180 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL---RP 1236
LT+SR + A LFILDS+ EP EL++FQ+R+ +G+AV G ++ +N+EK+LLRL +
Sbjct: 1153 WLTVSRDVMAHLFILDSSAEPGELEKFQQRYSVGQAVKGRIIGVNREKRLLRLKALDSQS 1212
Query: 1237 FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKN 1296
+ I + +S T +GDI+GGRI KIL GVGGLV+QIGPHL+GRVH+TE+ +
Sbjct: 1213 LPENIGETQKPLSATVEHT--KQGDIIGGRIQKILPGVGGLVIQIGPHLHGRVHYTEIVD 1270
Query: 1297 ICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPG 1356
V +P+SG+ EGQFVKCKVL++SR+ G+ V+LSLRSS+ +S S L D
Sbjct: 1271 SWVQEPISGFHEGQFVKCKVLDVSRSSEGSVRVDLSLRSSM-CANSNQSRRLFDDSRIRT 1329
Query: 1357 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1416
EKI DL P V+GYVK+V SKGCFIM+SR ++A+++LSNLSD YVE+P+ +FP+G
Sbjct: 1330 SRFEKINDLCPGTEVKGYVKSVNSKGCFIMVSRTIEARIILSNLSDEYVENPQNDFPVGL 1389
Query: 1417 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1476
LV GRVLS EP S +VEV+L+ + + +S+ + S+LHVGDI+ GQ+KRVES+GLF+T
Sbjct: 1390 LVHGRVLSSEPQSGKVEVSLRKNTGSKSQKSDDISYSDLHVGDIIAGQVKRVESFGLFVT 1449
Query: 1477 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1536
I+ + LV LCHVSELS++ V +I + ++AG+K+ D+E+ R+S+GMK SY D+
Sbjct: 1450 IQGSELVALCHVSELSDEPVLDIHSCHKAGDKI-------DEERHRVSIGMKKSYIGPDS 1502
Query: 1537 DNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPP 1596
+S++E DE + E S N M + +LVL + ESRASV P
Sbjct: 1503 TG--DTSDDEDDEIVPEEISRNPV--------------MGRDRNHALVLPKPESRASVLP 1546
Query: 1597 LEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD 1656
L+V+LD+ + ++ Q + A+ D+K+N+ K+K +++RE EI A EER L++D
Sbjct: 1547 LQVSLDESEGSDQENDNKGQEIANGAEVDDKKSNKRLKEKARKQRELEISALEERALQRD 1606
Query: 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI 1716
P+TPDEFE+LVRSSPNSSFVWI YMAF+L +ADV+KAR++AERAL+TINIREE EKLN+
Sbjct: 1607 IPQTPDEFEKLVRSSPNSSFVWINYMAFLLDLADVDKARAVAERALRTINIREEEEKLNV 1666
Query: 1717 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1776
WVAYFNLENEYG+P E+AV K+FQRALQYCDPKKVHLALL +YERTEQ LADELL +M
Sbjct: 1667 WVAYFNLENEYGSPREDAVKKIFQRALQYCDPKKVHLALLAMYERTEQYTLADELLDRMT 1726
Query: 1777 KKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1834
K+FK SCK+WLR +Q LKQ + E ++ +V+RALLSLP+ K IKF+SQTAILEFK GV
Sbjct: 1727 KRFKTSCKIWLRCIQLSLKQSKDVECIKLIVKRALLSLPQSKRIKFLSQTAILEFKCGVP 1786
Query: 1835 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1894
+ GRS FE IL EYPKRTDLWS+YLDQ FLFKK
Sbjct: 1787 EEGRSRFELILREYPKRTDLWSVYLDQ----------------------------FLFKK 1818
Query: 1895 YLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
YLEYEKS G+EERIE+VKQKA+EYV+S+LA
Sbjct: 1819 YLEYEKSQGDEERIEHVKQKALEYVQSSLA 1848
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1924 | ||||||
| TAIR|locus:2088644 | 1896 | RRP5 "Ribosomal RNA Processing | 0.752 | 0.763 | 0.583 | 0.0 | |
| UNIPROTKB|F1P3T9 | 1841 | PDCD11 "Uncharacterized protei | 0.366 | 0.383 | 0.281 | 1e-151 | |
| RGD|1304933 | 1876 | Pdcd11 "programmed cell death | 0.453 | 0.464 | 0.276 | 3.3e-151 | |
| MGI|MGI:1341788 | 1862 | Pdcd11 "programmed cell death | 0.487 | 0.503 | 0.272 | 1.6e-150 | |
| UNIPROTKB|G5E5C4 | 1874 | PDCD11 "Protein RRP5 homolog" | 0.651 | 0.668 | 0.264 | 7.3e-149 | |
| UNIPROTKB|A7MB10 | 1874 | PDCD11 "Protein RRP5 homolog" | 0.651 | 0.668 | 0.263 | 9.7e-148 | |
| UNIPROTKB|F1PLK8 | 1870 | PDCD11 "Uncharacterized protei | 0.651 | 0.670 | 0.258 | 4e-147 | |
| UNIPROTKB|Q14690 | 1871 | PDCD11 "Protein RRP5 homolog" | 0.658 | 0.677 | 0.253 | 3.5e-145 | |
| UNIPROTKB|F1S842 | 1859 | LOC100157027 "Uncharacterized | 0.686 | 0.710 | 0.253 | 1.4e-144 | |
| UNIPROTKB|F1S843 | 1876 | LOC100157027 "Uncharacterized | 0.686 | 0.703 | 0.252 | 1.5e-144 |
| TAIR|locus:2088644 RRP5 "Ribosomal RNA Processing 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4250 (1501.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 866/1485 (58%), Positives = 1075/1485 (72%)
Query: 457 YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 516
+KEG+ +RVR+LG + +EGLA G LK SAFEG VFTHSDVKPGMV K KVI+VD+FGAIV
Sbjct: 433 FKEGNHIRVRVLGLKQMEGLAVGTLKESAFEGPVFTHSDVKPGMVTKAKVISVDTFGAIV 492
Query: 517 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAI 576
QF GG+KA+CPL HMSEFE+ KP KKFKVGAELVFRVLG KSKRITVT+KKTLVKSKL I
Sbjct: 493 QFSGGLKAMCPLRHMSEFEVTKPRKKFKVGAELVFRVLGCKSKRITVTYKKTLVKSKLPI 552
Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 636
LSSY +AT+ L+THGWITKIEKHGCFVRFYNGVQGF PR ELGL+PG +P S++HVG+VV
Sbjct: 553 LSSYTDATEGLVTHGWITKIEKHGCFVRFYNGVQGFVPRFELGLEPGSDPDSVFHVGEVV 612
Query: 637 KCRIMSSIPASRRINLSFMMKPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSK 696
KCR+ S++ ++RI L+ +K + +K K
Sbjct: 613 KCRVTSAVHGTQRITLNDSIKLGSIVSGIIDTITSQAVIVRVK-----------SKSVVK 661
Query: 697 GTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA 756
GTI EHLADH E A ++ S+++PGYE D+LLVLD E +N+ LS+KYSLI A++LPSD
Sbjct: 662 GTISAEHLADHHEQAKLIMSLLRPGYELDKLLVLDIEGNNMALSSKYSLIKLAEELPSDF 721
Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
+ + PNSVVHGYVCN+IE GCFVRFLGRLTGFAPRSKA+D +AD+S++++VGQSVR+NI
Sbjct: 722 NQLQPNSVVHGYVCNLIENGCFVRFLGRLTGFAPRSKAIDDPKADVSESFFVGQSVRANI 781
Query: 817 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
+DVN E RITLSLKQS C+S DASF+QE+FL++EKI+ LQSS S+ WVE F IGS
Sbjct: 782 VDVNQEKSRITLSLKQSSCASVDASFVQEYFLMDEKISDLQSSDITKSDCSWVEKFSIGS 841
Query: 877 VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 936
+I+G + E ND GVVV+F+ ++V GFI H + GAT+ GSV+ A +LD+++AERLVDL
Sbjct: 842 LIKGTIQEQNDLGVVVNFDNINNVLGFIPQHHMGGATLVPGSVVNAVVLDISRAERLVDL 901
Query: 937 SLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 996
SL+ ++ + +L VHQ V+A+VEIVKE +LVLS+PE+ ++
Sbjct: 902 SLRPELLNNLTKEVSNSSKKKRKRGISK--ELEVHQRVSAVVEIVKEQHLVLSIPEHGYT 959
Query: 997 IGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIXXXXXXXXXXXX 1056
IGYASVSDYNTQK P KQF GQSV+A+V A+ + T+GRLLLLL ++
Sbjct: 960 IGYASVSDYNTQKLPVKQFSTGQSVVASVKAVQNPLTSGRLLLLLDSVSGTSETSRSKRA 1019
Query: 1057 XX-XXYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQ 1115
+VGS+V AEITEIKP ELR+ FG F GRIHITEV + ++ + F+ F++GQ
Sbjct: 1020 KKKSSCEVGSVVHAEITEIKPFELRVNFGNSFRGRIHITEVLVNDASTSDEPFAKFRVGQ 1079
Query: 1116 TVTARIIAKSNKPDMKKSFLWELSIKPSMLT-VSEIGSKLLFEECDVSIGQRVTGYVYKV 1174
+++AR++AK D+KK+ LWELS+KP+ML SE E+ + + GQ V GYVYKV
Sbjct: 1080 SISARVVAKPCHTDIKKTQLWELSVKPAMLKDSSEFNDTQESEQLEFAAGQCVIGYVYKV 1139
Query: 1175 DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL 1234
D EW L +SR++ A++FILD++ + EL+EF+RRF IGKAV+G+VL+ NKEKK LRLV
Sbjct: 1140 DKEWVWLAVSRNVTARIFILDTSCKAHELEEFERRFPIGKAVSGYVLTYNKEKKTLRLVQ 1199
Query: 1235 RPF-------QDGISDKT----VDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1283
RP +G KT I D+ FIHEGDI+GGRISKIL GVGGL VQ+GP
Sbjct: 1200 RPLLFIHKSIANGGGSKTDKPDSSIPGDDDTLFIHEGDILGGRISKILPGVGGLRVQLGP 1259
Query: 1284 HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1343
+++GRVHFTE+ + V DPL G+ EGQFVKCKVLEIS + +GT+ +ELSLR+SLDGMSS
Sbjct: 1260 YVFGRVHFTEINDSWVPDPLDGFREGQFVKCKVLEISSSSKGTWQIELSLRTSLDGMSSA 1319
Query: 1344 N--SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS 1401
+ S DL + D K E+IEDLSP+M VQGYVKN SKGCFI+LSR ++AKV LSNL
Sbjct: 1320 DHLSEDLKNN-DNVCKRFERIEDLSPDMGVQGYVKNTMSKGCFIILSRTVEAKVRLSNLC 1378
Query: 1402 DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIV 1461
D +V+ PEKEFP+GKLV GRVL+VEPLSKR+EVTLKT ++ +SE +L LHVGD++
Sbjct: 1379 DTFVKEPEKEFPVGKLVTGRVLNVEPLSKRIEVTLKTVNAGGRPKSESYDLKKLHVGDMI 1438
Query: 1462 IGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1521
G+I+RVE +GLFI I+ T +VGLCH+S+LS+D ++N++ Y+AGE V+ KILK+D+EK+
Sbjct: 1439 SGRIRRVEPFGLFIDIDQTGMVGLCHISQLSDDRMENVQARYKAGESVRAKILKLDEEKK 1498
Query: 1522 RISLGMKSSYFKNDADNLQMXXXXXXXXXXXXXXXYNRSSLLENSSVAVQDMDMESEDGG 1581
RISLGMKSSY N D+ +S +L AV D + GG
Sbjct: 1499 RISLGMKSSYLMNGDDDKAQPLSEDNTSMECDPINDPKSEVL----AAVDDFGFQETSGG 1554
Query: 1582 -SLVLAQIESRASVPPLEVNLDD-EQPDMDNGISQNQGHTDEAKTIDXXXXXXXXXXXXX 1639
SLVLAQ+ESRAS+PPLEV+LDD E+ D D+ SQNQ A D
Sbjct: 1555 TSLVLAQVESRASIPPLEVDLDDIEETDFDS--SQNQEKLLGANK-DEKSKRREKQKDKE 1611
Query: 1640 XXXXXXXXXXXXXXXXDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAE 1699
AP DEFE+LVRSSPNSSFVWIKYMAFMLS+AD+EKARSIAE
Sbjct: 1612 EREKKIQAAEGRLLEHHAPENADEFEKLVRSSPNSSFVWIKYMAFMLSLADIEKARSIAE 1671
Query: 1700 RALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLY 1759
RAL+TINIREE EKLNIWVAYFNLENE+GNPPEE+V KVF+RA QYCDPKKV+LALLG+Y
Sbjct: 1672 RALRTINIREEEEKLNIWVAYFNLENEHGNPPEESVKKVFERARQYCDPKKVYLALLGVY 1731
Query: 1760 ERTEQNKLADELLYKMIKKFKHSCKVWXXXXXXXXXXXXEGVQAVVQRALLSLPRHKHIK 1819
ERTEQ KLAD+LL +MIKKFK SCK+W E +Q+VV RALL LPRHKHIK
Sbjct: 1732 ERTEQYKLADKLLDEMIKKFKQSCKIWLRKIQSSLKQNEEAIQSVVNRALLCLPRHKHIK 1791
Query: 1820 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1879
FISQTAILEFK GVADRGRS+FEG+L EYPKRTDLWS+YLDQEIRLG+ D+IR LFERAI
Sbjct: 1792 FISQTAILEFKCGVADRGRSLFEGVLREYPKRTDLWSVYLDQEIRLGEDDVIRSLFERAI 1851
Query: 1880 XXXXXXXXXXXXXXXYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
+LEYEKSVG+EER+EYVKQ+AMEY STLA
Sbjct: 1852 SLSLPPKKMKFLFKKFLEYEKSVGDEERVEYVKQRAMEYANSTLA 1896
|
|
| UNIPROTKB|F1P3T9 PDCD11 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 752 (269.8 bits), Expect = 1.0e-151, Sum P(3) = 1.0e-151
Identities = 210/747 (28%), Positives = 352/747 (47%)
Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXX---XXXXXXXXXILDNEI---EANE 179
+T+K + GM G + EV +LVI +L ++ E E
Sbjct: 81 LTIKELCEGMLFLGCIKEVTVFELVISLPNGLTGFVPVTHISDAYSELLSKQVTQGELLE 140
Query: 180 D-NLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTA 238
D N L ++ G LV C+V ++ K G+R I + GM+L+
Sbjct: 141 DLNSLSDLYSPGMLVRCVVTSVE--KSADGRRSIKLSINPKSVNKGLSASALTSGMLLSG 198
Query: 239 YVKSIEDHGYILHFGLPSFTGFLP----RNNL-AENSGIDVKPGLLLQGVVRSIDRTRKV 293
+V S+EDHGY++ G+ FLP +N + A G D+K G L V+ + +V
Sbjct: 199 FVSSVEDHGYLIDIGVSGTHAFLPHQKAQNYIKAVKRGSDLKIGQSLNCVIEEVKNEGRV 258
Query: 294 VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
V LS+D V+ + + + ++ L+PG++V +VQ + GV L+FL+ FTG VD H
Sbjct: 259 VRLSADRSEVAASIATEQQNWTLSNLLPGLVVKAQVQKVAPLGVSLTFLSSFTGIVDFMH 318
Query: 354 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDI 410
+ +TN Y+ ++ V A IL PTS+ V LTL LH P+ + ++G +
Sbjct: 319 VDPE-KSTN----YSPNQMVKACILSTHPTSKVVRLTLRQAFLHPGGSPNQLSNDRIGAV 373
Query: 411 YDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
++S + + A+ +++ +K G + RI+ +
Sbjct: 374 VEESTVKAFYKQFGAVFQLDDGML---AFARPKHLSKTRKSFKPAAFKAGCKHKCRIIDY 430
Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
++ + LK E + D+ G V++GKV+++ G V+ G+K L P H
Sbjct: 431 SLMDEMCIVSLKHQIIEARFLRYEDIHTGDVMQGKVLSLKPIGMQVKVTDGIKGLVPSMH 490
Query: 531 MSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
+++ + +P KK+ VG E+ RVL K++ +T KKTLV+SKL +LSSY +A LI
Sbjct: 491 LADVILKQPEKKYNVGDEVRCRVLECNPAEKKLFLTLKKTLVQSKLPVLSSYEDAEPGLI 550
Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
THG++ + GC V+FYN V+G P++EL +P P ++H GQVVK ++ P
Sbjct: 551 THGFVVCAREFGCIVKFYNDVKGLVPKNELSSEPISCPDKVFHDGQVVKVMVLKCEPQQE 610
Query: 649 RINLSFMMKPTRVSEDXXX----------XXXXXXXXXXXXXXXXXXXXXXIAK--GYSK 696
R+ LSF + V E I + G
Sbjct: 611 RLLLSFRLSSRTVPEGRSECIPKKKQQVKYQIGEMVDVEVLKKNENGLEVSILEDGGNVI 670
Query: 697 GTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPS 754
+PT HL+D + ++ ++ ++ G +++ L ++ ++L K ++I++ Q Q+
Sbjct: 671 AWLPTVHLSDFVANSKLLWHCLQEGDVLPRVMCLSDKGDRIILCRKSAVISAVQEEQVVR 730
Query: 755 DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRS 814
S I P ++ GYV ++ G FV F +TG AP+ D D + VGQ+V +
Sbjct: 731 SFSEIQPGVLLIGYVRKVMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVVGQTVIA 790
Query: 815 NILDVNSETGRITLSLKQSCCSSTDAS 841
++ ++ E R+ LSLK S CSS D++
Sbjct: 791 KVMSIDEEKQRVLLSLKVSECSSGDSA 817
|
|
| RGD|1304933 Pdcd11 "programmed cell death 11" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 830 (297.2 bits), Expect = 3.3e-151, Sum P(3) = 3.3e-151
Identities = 258/934 (27%), Positives = 429/934 (45%)
Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILD--NEIEANEDNL- 182
++L+++ GM++ G V EVNE +LV+ NE A E+ L
Sbjct: 75 LSLESLCEGMRILGCVKEVNELELVVSLPNGLQGFVQVTEICDAYTQKLNEQVAQEEPLE 134
Query: 183 ----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTA 238
LP +F G LV C+V LD E GK+ + E ++ GM+LT
Sbjct: 135 DLLRLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPKRVNKVLSAEALRPGMLLTG 192
Query: 239 YVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKV 293
V S+EDHGY++ G+ FL E N G K G L VV + V
Sbjct: 193 TVSSLEDHGYLVDIGVDGTRAFLSLQKAQEYIRQKNKGAKFKVGQYLTCVVEELKSNGGV 252
Query: 294 VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
V LS + VS + + +++ L+PG++V +VQ + + G+ L+FLT+FTG VD H
Sbjct: 253 VSLSVEHSQVSSAFATEEQSWNLNNLLPGLVVRAQVQKVTQFGLQLNFLTFFTGLVDFMH 312
Query: 354 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDI 410
L+ P Y+ + V A IL V P +R V L+L P LH P + + ++G +
Sbjct: 313 LE---PKK--MGSYSSKQTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGTV 367
Query: 411 YDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
D + + + AY +S +++ + + +K GS R RI+ +
Sbjct: 368 LDDASVEGFFEKAGAIFRLRDGVL---AYARLSHLSDSKKAFSAEAFKLGSTHRCRIIDY 424
Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
++ LA L+ S + D+K G +VKGKV+A+ FG +V+ ++ L P H
Sbjct: 425 SQMDELALLSLRKSIIAAPFLRYQDIKTGTIVKGKVLALKPFGMLVKVGEQMRGLVPSMH 484
Query: 531 MSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
+++ + P KKF G E+ RVL ++K++ +T KKTLV SKL ++ Y +A L
Sbjct: 485 LADIMMKNPEKKFNTGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLPAITCYEDAKPGLQ 544
Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
THG I +++ +GC V+FYN VQG P+ EL +P +++ GQVVK +++ P+
Sbjct: 545 THGVIIRVKDYGCLVKFYNDVQGLVPKHELSAQHIPDPERVFYTGQVVKVAVLNCEPSKE 604
Query: 649 RINLSF-MMKPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIP------- 700
R+ LSF ++ + ++ G +P
Sbjct: 605 RMLLSFKLLSGSEPKDESVKNSKKKGSTVNTGQLVDVKVLEKTKNGLEVAILPHNIPAFL 664
Query: 701 -TEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDAS 757
T HL+DH+ + ++ ++ G ++L L ++LL K +L+++ + Q P S
Sbjct: 665 PTPHLSDHVANGPLLHHWLQTGDTLHRVLCLSQSEKHILLCRKPALVSTVEGGQDPKSLS 724
Query: 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
I P ++ G+V +I + G FV+F L+G +P++ D S+ + GQ+V + +
Sbjct: 725 EIQPGMLLIGFVKSIKDYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVT 784
Query: 818 DVNSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIAMLQSSKHNGSEL-KWVEGFI 873
+V+ R+ LSL+ S CS S SF+ LEE + + S L + +
Sbjct: 785 NVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLMSNQDSVLIQTLADMT 844
Query: 874 IGSVIEGKVHESNDFG-VVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAER 932
G V++ V E + G VV D+ + + AG +E G + +L V +
Sbjct: 845 PGMVLDAMVQEVLENGSVVFGGGPVPDLILRASRYHRAGQELEPGQKKKVVVLHVDALKL 904
Query: 933 LVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPE 992
V +SL ++R +A HQ IV+ ++E++ V SL E
Sbjct: 905 EVHVSLHQDLVNR--KARKLRKNSR-------------HQ---GIVQHLEESFAVASLVE 946
Query: 993 YNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATV 1025
H + ++ +S N T F ++ GQ V T+
Sbjct: 947 TGHLVAFSLISHLNDTFHFDSEKLRVGQGVCLTL 980
|
|
| MGI|MGI:1341788 Pdcd11 "programmed cell death 11" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 834 (298.6 bits), Expect = 1.6e-150, Sum P(3) = 1.6e-150
Identities = 275/1008 (27%), Positives = 453/1008 (44%)
Query: 54 FPRGGGHSLTQRERDEIHA-EVDAEFE-AVERGLHXXXXXXXXXTERKANETVDDLGSLF 111
FPRGG L + E+ E D F+ + E G + K + ++ S+
Sbjct: 8 FPRGGTRKLHKSEKSSQQVVEQDNLFDVSTEEGPIKRKKSQKGPAKTKKLK-IEKRKSI- 65
Query: 112 GDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXIL 171
I K ++L+++ GM++ G V EV+E +LV+
Sbjct: 66 -KSIKEKF----EILSLESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVTEVCDAYT 120
Query: 172 D--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXX 224
NE A E+ L LP +F G LV C+V LD E GK+ +
Sbjct: 121 QKLNEQVAQEEPLEDLLRLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPKRVNKV 178
Query: 225 XXXETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLL 279
+ ++ GM+LT V S+EDHGY++ G+ FL E N G K G
Sbjct: 179 LSADALRPGMLLTGTVSSLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKFKVGQY 238
Query: 280 LQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVML 339
L VV + VV LS + VS + + +++ L+PG++V +VQ + + G+ L
Sbjct: 239 LTCVVEEVKSNGGVVSLSVEHSEVSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQFGLQL 298
Query: 340 SFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNR 399
+FLT+F G VD HL+ P Y+ ++ V A IL V P +R V L+L P LH
Sbjct: 299 NFLTFFKGLVDFMHLE---PKK--MGSYSSNQTVKACILCVHPRTRVVRLSLRPIFLHPG 353
Query: 400 APPSHV---KVGDIYDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKK 456
P + + ++G + D + + AY +S +++ + +
Sbjct: 354 RPLTRISYQQLGAVLDDVPVQGFFKNAGAIFRLKDGVL---AYARVSHLSDSKKAFNAEA 410
Query: 457 YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 516
+K GS + RI+ + ++ LA L+ S + D+K G VVKG V+A+ FG +V
Sbjct: 411 FKPGSTHKCRIIDYSQMDELALLSLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKPFGILV 470
Query: 517 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKL 574
+ +K L P H+++ + P KK+ G E+ RVL ++K++ +T KKTLV SKL
Sbjct: 471 KVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKL 530
Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
++++ Y A L THG I +++ +GC V+FYN VQG P+ EL +P ++++ GQ
Sbjct: 531 SLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQ 590
Query: 635 VVKCRIMSSIPASRRINLSF-MMKPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKG 693
VVK ++S P+ R+ LSF ++ +R + G
Sbjct: 591 VVKVAVLSCEPSKERMLLSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLEKTKTG 650
Query: 694 Y--------SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL 745
+ +PT HL+DH + ++ ++ G ++L L ++LL K +L
Sbjct: 651 LEVAILPHNTPAFLPTPHLSDHAANGPLLHHWLQTGDTLHRVLCLSQSERHILLCRKPAL 710
Query: 746 INSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS 803
+++ + Q P S I P ++ G+V I E G FV+F L+G +P++ D S
Sbjct: 711 VSTVEGGQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPS 770
Query: 804 KTYYVGQSVRSNILDVNSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIAMLQSSK 860
+ + GQ+V + + +V+ R+ LSL+ S CS S SF+ LEE +
Sbjct: 771 EHFVEGQTVVAKVTNVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLMS 830
Query: 861 HNGSEL-KWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGS 918
+ S L + + G V++ VHE D VV S + D+ + + AG VE G
Sbjct: 831 NQDSVLIQTLADMTPGMVLDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQEVEPGQ 890
Query: 919 VIQAAILDVAKAERLVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIV 978
+ +L V + V +SL ++R HQ IV
Sbjct: 891 KKKVVVLHVDMLKLEVHVSLHQDLVNRKTRKLRKSSR---------------HQ---GIV 932
Query: 979 EIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATV 1025
+ ++E++ V SL E H + ++ +S N T F ++ GQ V T+
Sbjct: 933 QHLEESFAVASLVETGHLVAFSLISHLNDTFHFDSEKLRVGQGVCLTL 980
|
|
| UNIPROTKB|G5E5C4 PDCD11 "Protein RRP5 homolog" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 961 (343.3 bits), Expect = 7.3e-149, Sum P(3) = 7.3e-149
Identities = 365/1379 (26%), Positives = 607/1379 (44%)
Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILD--NEIEANEDNL- 182
+ ++++ GM++ G V EVNE +L I + NE A E+ L
Sbjct: 75 LNVESLCEGMRILGCVKEVNELELAISLPNGLQGYVQVTEICDAYTEKLNEQVAQEEPLQ 134
Query: 183 ----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTA 238
LP +F G LV C+V LD K K+ + ET++ GM+LT
Sbjct: 135 DLVGLPELFSPGMLVRCVVSSLDTTKGS--KKNVMLSLNPKNVNRVLSAETLKPGMLLTG 192
Query: 239 YVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKV 293
V S+EDHGY++ G+ FLP E N G +K G L ++ + +R V
Sbjct: 193 TVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLNCLIEEVKGSRGV 252
Query: 294 VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
V LS VS + + + +++ L+PG++V +VQ + G+ L FL++F+G VD H
Sbjct: 253 VTLSIGHSEVSAAIATEEQSWTLNSLLPGLVVKAQVQKVTPLGLTLKFLSFFSGLVDFMH 312
Query: 354 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDI 410
L T + N ++V A +L V P +RAV L+L P L P + + ++G +
Sbjct: 313 LDPKKAGTYFSN-----QQVRACVLCVHPRTRAVRLSLRPVFLQPGRPLTRLLCQQLGAV 367
Query: 411 YDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
D + T AY + ++ + + +K G+ + RI+ +
Sbjct: 368 LDDVPVQGFFGSAGATFKLKD---GTLAYARRNHLSNSKKTFKPEAFKPGNTHKCRIIDY 424
Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
++ LA L+ S E + D+KPG +VKGKV+ + G +V+ ++ L P H
Sbjct: 425 SQMDELALLSLRTSIIEAQFLWYHDIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMH 484
Query: 531 MSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
+++ I P KK+ VG E+ RVL K+K++ +T KKTLV+SKL ++ Y +A L
Sbjct: 485 LADILIKNPEKKYHVGDEVKCRVLLCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQ 544
Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
THG+I +++ +GC V+FYN VQG PR EL + +P S+++ GQVVK +++ P+
Sbjct: 545 THGFILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKE 604
Query: 649 RINLSFMM--KPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXX-----XIAKGYSKGTIPT 701
R+ LSF + P + E + G +PT
Sbjct: 605 RMLLSFRLLSDPKQEGEGQSQKKKKAVSAGQLVDVKVLEKTKDGLKVAVLPHNIPGFLPT 664
Query: 702 EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 759
HL+DH+ + ++ ++ G ++L L +LL K +L+++ + Q P S I
Sbjct: 665 AHLSDHVTNGPLLYHWLQTGDTLHRVLCLSVSEERVLLCRKPALVSAVEGGQNPKSFSEI 724
Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
HP ++ G+V NI + G FV+F L+G AP++ D S + GQ+V + + +V
Sbjct: 725 HPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVTNV 784
Query: 820 NSETGRITLSLKQSCCSSTD---ASFMQEHFLLEEKIAMLQSSKHNGSEL-KWVEGFIIG 875
+ E R+ LSL+ S C+ D S + LEE+ + + S L + + G
Sbjct: 785 DEEKQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTPG 844
Query: 876 SVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAER 932
++ +V E + G V+ F E V G + + + AG +E G +A IL+V +
Sbjct: 845 MALDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAGQELEPGQKKKAVILNVDMLKL 902
Query: 933 LVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPE 992
V +SL ++R DL AIV+ ++E++ V SL E
Sbjct: 903 EVHVSLCHDLVNR------------KAKKLKKGSDL------QAIVQHLEESFAVASLVE 944
Query: 993 YNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLL----LKAIXXX 1047
H ++ S N T +F ++ GQ V T+ T G LL + K
Sbjct: 945 TGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLQTTEPGVT-GLLLAIEGPAAKRTMRQ 1003
Query: 1048 XXXXXXXXXXXXXYD--------------VGSLVQAEITEIKPLELRLKFGIGFHGRIHI 1093
D +G +V + IKP + + G G IH
Sbjct: 1004 TRKDSETVDEDEEVDPALVVGTVKKHTLSIGDVVTGTVKSIKPTHVVVTLEDGIIGCIHA 1063
Query: 1094 TEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSK 1153
+ + DD V + + K+G+ VTAR+I DMK +S + T+ E+ +
Sbjct: 1064 SHILDDVP-VGTSPTAKLKVGKKVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSVR 1119
Query: 1154 L--LFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1211
L E+ ++ + K+ T++ LK + + E +F+ R
Sbjct: 1120 PSELKEDGHTTLNTHSVSPLEKIKQYQPGQTVTCFLKKSIMV-KKWLEVEIAPDFRGRIP 1178
Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK-TVDISNDNMQTFI-------HE---G 1260
+ +T LS K+L+ + FQ G + K TV ++ + F+ H+ G
Sbjct: 1179 L--LLTS--LSF----KVLKHPDKKFQIGQALKATVVGPAESSKAFLCLSLIGPHKLKKG 1230
Query: 1261 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEIS 1320
++ GR+ K+ + GL V GRV + + L + Q V+C VL +
Sbjct: 1231 EVAMGRVVKV-TPKEGLTVSFPFGRVGRVSMFHVSDSYSETHLEDFVPQQVVRCYVLSAA 1289
Query: 1321 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1380
V + LSLRSS TN S D P + IEDL +++G+VK+V
Sbjct: 1290 TPV-----LTLSLRSS-----RTNPETKSKITD-P--EINSIEDLEEGQLLRGFVKSVQP 1336
Query: 1381 KGCFIMLSRKLDAKVLLSNLS--DGYVESP-EKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
G + L + ++S + +P ++ P GKL+ +VL + VE++L
Sbjct: 1337 SGVLVGLGPSVTGLARHPHVSQHNQSKNAPYDRHLPEGKLLTAKVLRLNHQESLVELSL 1395
|
|
| UNIPROTKB|A7MB10 PDCD11 "Protein RRP5 homolog" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 951 (339.8 bits), Expect = 9.7e-148, Sum P(3) = 9.7e-148
Identities = 364/1379 (26%), Positives = 607/1379 (44%)
Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILD--NEIEANEDNL- 182
+ ++++ GM++ G V EVNE +L I + NE A E+ L
Sbjct: 75 LNVESLCEGMRILGCVKEVNELELAISLPNGLQGYVQVTEICDAYTEKLNEQVAQEEPLQ 134
Query: 183 ----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTA 238
LP +F G LV C+V LD K K+ + ET++ GM+LT
Sbjct: 135 DLVGLPELFSPGMLVRCVVSSLDTTKGS--KKNVMLSLNPKNVNRVLSAETLKPGMLLTG 192
Query: 239 YVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKV 293
V S+EDHGY++ G+ FLP E N G +K G L ++ + +R V
Sbjct: 193 TVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLNCLIEEVKGSRGV 252
Query: 294 VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
V LS VS + + + +++ L+PG++V +VQ + G+ L FL++F+G VD H
Sbjct: 253 VTLSIGHSEVSAAIATEEQSWTLNSLLPGLVVKAQVQKVTPLGLTLKFLSFFSGLVDFMH 312
Query: 354 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDI 410
L T + N ++V A +L V P +RAV L+L P L P + + ++G +
Sbjct: 313 LDPKKAGTYFSN-----QQVRACVLCVHPRTRAVRLSLRPVFLQPGRPLTRLLCQQLGAV 367
Query: 411 YDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
D + T AY + ++ + + +K G+ + RI+ +
Sbjct: 368 LDDVPVQGFFGSAGATFKLKD---GTLAYARRNHLSNSKKTFKPEAFKPGNTHKCRIIDY 424
Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
++ LA L+ S E + D+KPG +VKGKV+ + G +V+ ++ L P H
Sbjct: 425 SQMDELALLSLRTSIIEAQFLWYHDIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMH 484
Query: 531 MSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
+++ I P KK+ VG E+ RVL K+K++ +T KKTLV+SKL ++ Y +A L
Sbjct: 485 LADILIKNPEKKYHVGDEVKCRVLLCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQ 544
Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
THG+I +++ +GC V+FYN VQG PR EL + +P S+++ GQVVK +++ P+
Sbjct: 545 THGFILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKE 604
Query: 649 RINLSFMM--KPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXX-----XIAKGYSKGTIPT 701
R+ LSF + P + E + G +PT
Sbjct: 605 RMLLSFRLLSDPKQEGEGQSQKKKKAVSAGQLADVKVLEKTKDGLKVAVLPHNIPGFLPT 664
Query: 702 EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 759
HL+DH+ + ++ ++ G ++L L +LL K +L+++ + Q P S I
Sbjct: 665 AHLSDHVTNGPLLYHWLQTGDTLHRVLCLSVSEERVLLCRKPALVSAVEGGQNPKSFSEI 724
Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
HP ++ G+V NI + G FV+F L+G AP++ D S + GQ+V + + +V
Sbjct: 725 HPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVTNV 784
Query: 820 NSETGRITLSLKQSCCSSTD---ASFMQEHFLLEEKIAMLQSSKHNGSEL-KWVEGFIIG 875
+ E R+ LSL+ S C+ D S + LEE+ + + S L + + G
Sbjct: 785 DEEKQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTPG 844
Query: 876 SVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAER 932
++ +V E + G V+ F E V G + + + AG +E G +A IL+V +
Sbjct: 845 MALDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAGQELEPGQKKKAVILNVDMLKL 902
Query: 933 LVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPE 992
V +SL ++R DL AIV+ ++E++ V SL E
Sbjct: 903 EVHVSLCHDLVNR------------KAKKLKKGSDL------QAIVQHLEESFAVASLVE 944
Query: 993 YNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLL----LKAIXXX 1047
H ++ S N T +F ++ GQ V T+ T G LL + K
Sbjct: 945 TGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLQTTEPGVT-GLLLAIEGPAAKRTMRQ 1003
Query: 1048 XXXXXXXXXXXXXYD--------------VGSLVQAEITEIKPLELRLKFGIGFHGRIHI 1093
D +G +V + IKP + + G G IH
Sbjct: 1004 TRKDSETVDEDEEVDPALVVGTVKKHTLSIGDVVTGTVKSIKPTHVVVTLEDGIIGCIHA 1063
Query: 1094 TEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSK 1153
+ + DD V + + K+G+ VTAR+I DMK +S + T+ E+ +
Sbjct: 1064 SHILDDVP-VGTSPTAKLKVGKKVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSVR 1119
Query: 1154 L--LFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1211
L E+ ++ + K+ T++ LK + ++ E + + R
Sbjct: 1120 PSELKEDGHTTLNTHSVSPLEKIKQYQPGQTVTCFLK-KYNMVKKWLEVEIAPDIRGRIP 1178
Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK-TVDISNDNMQTFI-------HE---G 1260
+ +T LS K+L+ + FQ G + K TV ++ + F+ H+ G
Sbjct: 1179 L--LLTS--LSF----KVLKHPDKKFQIGQALKATVVGPAESSKAFLCLSLIGPHKLKKG 1230
Query: 1261 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEIS 1320
++ GR+ K+ + GL V GRV + + L + Q V+C VL +
Sbjct: 1231 EVAMGRVVKV-TPKEGLTVSFPFGRVGRVSMFHVSDSYSETHLEDFVPQQVVRCYVLSAA 1289
Query: 1321 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1380
V + LSLRSS TN S D P + IEDL +++G+VK+V
Sbjct: 1290 TPV-----LTLSLRSS-----RTNPETKSKITD-P--EINSIEDLEEGQLLRGFVKSVQP 1336
Query: 1381 KGCFIMLSRKLDAKVLLSNLS--DGYVESP-EKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
G + L + ++S + +P ++ P GKL+ +VL + VE++L
Sbjct: 1337 SGVLVGLGPSVTGLARHPHVSQHNQSKNAPYDRHLPEGKLLTAKVLRLNHQESLVELSL 1395
|
|
| UNIPROTKB|F1PLK8 PDCD11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 937 (334.9 bits), Expect = 4.0e-147, Sum P(3) = 4.0e-147
Identities = 359/1388 (25%), Positives = 614/1388 (44%)
Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILD--NEIEANEDNL- 182
++++++ GM++ G V EV+E +LVI + NE A E+ L
Sbjct: 72 LSVESLREGMRILGCVKEVHELELVISLPNGLQGFVQATEICDAYTEQLNEQVAQEEPLK 131
Query: 183 ----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTA 238
L +F G LV C+V + E GK+ + E ++ GM+LT
Sbjct: 132 DLVCLSELFSPGMLVRCVVSSVGIT--ESGKKSVKLSLNPKNVNEVLSAEALKPGMLLTG 189
Query: 239 YVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKV 293
V S+EDHGY++ G+ FLP E N G +K G L ++ + V
Sbjct: 190 TVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLNCIIEEVKGNGGV 249
Query: 294 VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
V LS P VS + + + +++ L+PG++V +VQ + G+ L+FLT+F+G VD H
Sbjct: 250 VGLSIGPSEVSAAIATEEQNWTLNNLLPGLVVKAQVQKVTPVGLTLNFLTFFSGLVDFMH 309
Query: 354 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDI 410
L T + N + V A +L V P +RAV L+L P L + + +G +
Sbjct: 310 LDPKKAGTYFSN-----QAVRACVLCVHPRTRAVRLSLRPIFLQPGRSLTRLSCQHLGAV 364
Query: 411 YDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
D + + AY +S +++ + + YK G+ + RI+ +
Sbjct: 365 LDDVPVQSFFSKAGATFRLKDGAL---AYARLSHLSDSKNIFNAEAYKPGNIHKCRIIDY 421
Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
++ + L+ S E F + D+KPG +VKG V+ ++ +G +V+ ++ L P H
Sbjct: 422 SQMDEMVLLSLRPSIIESQYFRYHDIKPGALVKGTVLTIEPYGMLVKVGEQIRGLIPPMH 481
Query: 531 MSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
+++ I P KK+ +G E+ RVL ++K++ +T KKTL++SKL ++ YA+A L
Sbjct: 482 LADILIKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPAITCYADAKPGLQ 541
Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
THG+I +++ +GC V+FYN VQG P+ EL + +P +++ GQVVK +++ P+
Sbjct: 542 THGFILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYTGQVVKVVVLNCEPSKE 601
Query: 649 RINLSFMM--KPTRV-----SEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPT 701
R+ LSF + P + + + +PT
Sbjct: 602 RMLLSFKLLGDPKKEHTGHSQKKRRAISVGQLVDVKVLEKTKDGLEVSVLPHNIPAFLPT 661
Query: 702 EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 759
HL+DH+ + ++ ++ G ++L L +LL K +L+++ + Q P + + I
Sbjct: 662 PHLSDHVANGPLLYHWLQAGDTLHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFAEI 721
Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
HP ++ G+V +I + G FV+F L+G AP++ D S + GQ+V + + +V
Sbjct: 722 HPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNV 781
Query: 820 NSETGRITLSLKQSCCSSTD---ASFMQEHFLLEEKIAMLQSSKHNGSEL-KWVEGFIIG 875
+ E R+ LSL+ S C D S + LEE+ + + S L + + G
Sbjct: 782 DEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTPG 841
Query: 876 SVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAER 932
V++ +V E + G VV F E V G + + + AG VE G + IL+V +
Sbjct: 842 MVLDLEVQEVLEDGSVV-FSE-GPVSGLVLRASKYHRAGQEVEPGQKKKVVILNVDMLKL 899
Query: 933 LVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPE 992
V +SL ++R + HQ AIV+ ++E++ V SL E
Sbjct: 900 EVHVSLCHDLVNRKPKKLKKGSE---------------HQ---AIVQHLEESFAVASLVE 941
Query: 993 YNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIXXXXXXX 1051
H ++ S N T +F ++ GQ V T+ T G LL +
Sbjct: 942 TGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGMT-GFLLAVEGPAAKRTVRQ 1000
Query: 1052 XXXXXXXXXYD------------------VGSLVQAEITEIKPLELRLKFGIGFHGRIHI 1093
D +G +V + IKP + + G G IH
Sbjct: 1001 TRKDSETVDEDEEADPALVVGAVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHA 1060
Query: 1094 TEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIG-- 1151
+ + DD V + + K+G+TVTAR+I DMK +S + T+ E+
Sbjct: 1061 SHILDDVP-VGTSPTAKLKVGRTVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSVR 1116
Query: 1152 -SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRF 1210
S+L + C ++ + ++ K+ A T+ LK + ++ E + + R
Sbjct: 1117 PSELEKDGC-TALNTHSSSHLEKIKQYQAGQTLICFLK-KYNVVKKWLEVEIAPDIRGRI 1174
Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI-------HE---G 1260
+ +T LS K+L+ + F+ G + K + D+ + F+ H+ G
Sbjct: 1175 PL--LLTS--LSF----KVLKHPDKKFRIGQALKATVVGPDSSKAFLCLSLIGPHKLEKG 1226
Query: 1261 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEIS 1320
++ GR+ K+ + GL V G+V + + PL + + V+C VL
Sbjct: 1227 EVAMGRVVKV-TPKEGLTVSFPFGKIGKVSVFHVSDSYSETPLEDFVPQKIVRCYVLS-- 1283
Query: 1321 RTVRGTFHV-ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1379
T HV LSLRSS TN S D P + I+D+ +++GYVK+V
Sbjct: 1284 ----ATGHVLTLSLRSS-----RTNPETKSKITD-P--EINSIQDIQEGQLLRGYVKSVQ 1331
Query: 1380 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKLVAGRVLSVEPLSKRVE 1433
G L + V ++S Y SP K+ P GKL+ +VLS++ VE
Sbjct: 1332 PHGVLFGLGPSVVGLVQYPHVSQ-Y--SPSKKTLYNRYLPEGKLLTAKVLSLKCQKNLVE 1388
Query: 1434 VTLKTSDS 1441
++ +D+
Sbjct: 1389 LSFLPNDT 1396
|
|
| UNIPROTKB|Q14690 PDCD11 "Protein RRP5 homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 932 (333.1 bits), Expect = 3.5e-145, Sum P(3) = 3.5e-145
Identities = 348/1375 (25%), Positives = 598/1375 (43%)
Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILD--NEIEANEDNL- 182
++++++ GM++ G V EVNE +LVI NE E L
Sbjct: 75 LSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLK 134
Query: 183 ----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTA 238
LP +F G LV C+V L + GK+ + E ++ GM+LT
Sbjct: 135 DLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTG 192
Query: 239 YVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKV 293
V S+EDHGY++ G+ FLP E N G +K G L +V + V
Sbjct: 193 TVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGV 252
Query: 294 VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
V LS VS + + + +++ L+PG++V +VQ + G+ L+FLT+FTG VD H
Sbjct: 253 VSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMH 312
Query: 354 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDI 410
L T + N + V A IL V P +R V L+L P L P + + +G +
Sbjct: 313 LDPKKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAV 367
Query: 411 YDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
D + + AY +S +++ + + +K G+ + RI+ +
Sbjct: 368 LDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDY 424
Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
++ LA L+ S E + D++PG VVKG V+ + S+G +V+ ++ L P H
Sbjct: 425 SQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMH 484
Query: 531 MSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
+++ + P KK+ +G E+ RVL ++K++ +T KKTL++SKL +++ YA+A L
Sbjct: 485 LADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQ 544
Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
THG+I +++ +GC V+FYN VQG P+ EL + +P +++ GQVVK +++ P+
Sbjct: 545 THGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKE 604
Query: 649 RINLSFMM--------KPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYS-KGTI 699
R+ LSF + +P S+ ++ + +
Sbjct: 605 RMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNIRAFL 664
Query: 700 PTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDAS 757
PT HL+DH+ + ++ ++ G ++L L +LL K +L+++ + Q P + S
Sbjct: 665 PTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFS 724
Query: 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
IHP ++ G+V +I + G F++F L+G AP++ D S + GQ+V + +
Sbjct: 725 EIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVT 784
Query: 818 DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGF 872
+V+ E R+ LSL+ S C D + + LL + + LQ S + ++ +
Sbjct: 785 NVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSLMSNRDSVLIQTLAEM 843
Query: 873 IIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAE 931
G ++ V E D VV S D+ + + AG VESG + IL+V +
Sbjct: 844 TPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVDLLK 903
Query: 932 RLVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLP 991
V +SL ++R +A HQ AIV+ +++++ + SL
Sbjct: 904 LEVHVSLHQDLVNR--KARKLRKGSE-------------HQ---AIVQHLEKSFAIASLV 945
Query: 992 EYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLL----LKAIXX 1046
E H ++ S N T +F ++ GQ V T+ T G LL + K
Sbjct: 946 ETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVT-GLLLAVEGPAAKRTMR 1004
Query: 1047 XXXXXXXXXXXXXXYD--------------VGSLVQAEITEIKPLELRLKFGIGFHGRIH 1092
D +G +V + IKP + + G G IH
Sbjct: 1005 PTQKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIH 1064
Query: 1093 ITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGS 1152
+ + DD + K+G+TVTAR+I DMK +S + T+ E+
Sbjct: 1065 ASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DMKTFKYLPISHPRFVRTIPELSV 1120
Query: 1153 KLL-FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1211
+ E+ ++ + K+ A T++ LK + ++ E + + R
Sbjct: 1121 RPSELEDGHTALNTHSVSPMEKIKQYQAGQTVTCFLK-KYNVVKKWLEVEIAPDIRGRIP 1179
Query: 1212 IG-KAVTGHVLSINKEKKLLRLVLRPFQDGI-SDKTVDISNDNMQTFIHEGDIVGGRISK 1269
+ +++ VL +K + LR G S KT+ + + EG++ GR+ K
Sbjct: 1180 LLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTLLCLSLTGPHKLEEGEVAMGRVVK 1239
Query: 1270 ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1329
+ G L V G V + + PL + + V+C +L + V +
Sbjct: 1240 VTPNEG-LTVSFPFGKIGTVSIFHMSDSYSETPLEDFVPQKVVRCYILSTADNV-----L 1293
Query: 1330 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1389
LSLRSS TN + + V+ P + I+D+ +++GYV ++ G F L
Sbjct: 1294 TLSLRSS-----RTNP-ETKSKVEDP--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGP 1345
Query: 1390 KLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
+ S++S K P GKL+ RVL + VE++ D+
Sbjct: 1346 SVVGLARYSHVSQHSPSKKALYNKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT 1400
|
|
| UNIPROTKB|F1S842 LOC100157027 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 916 (327.5 bits), Expect = 1.4e-144, Sum P(3) = 1.4e-144
Identities = 370/1461 (25%), Positives = 634/1461 (43%)
Query: 54 FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHXXXXXXXXXTERKANETVDDLGSLFGD 113
FPRGG + + E+ + V+ + L +K+ + + L D
Sbjct: 8 FPRGGTRKIRKSEKT-LQQSVEQD------NLFDISTEEESTKRKKSQKEPATIKKLKTD 60
Query: 114 GI-SGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXIL 171
S K R +I +++ GM++ G V EVNE +LVI
Sbjct: 61 KRESSKFVREKFEILNEESLCEGMRILGCVKEVNELELVISLPNGLQGCVQVTEICDAYT 120
Query: 172 D--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXX 224
NE A E+ L LP +F G LV C+V L K GK+ +
Sbjct: 121 KKLNEQVAQEEPLQDLVGLPELFSPGMLVRCVVSSLGITKS--GKKDVKLSLNPKNVNKV 178
Query: 225 XXXETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLL 279
E ++ GM+LT V S+EDHGY++ G+ FLP E N +K G
Sbjct: 179 LNPEALKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKDAKLKVGQY 238
Query: 280 LQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVML 339
L +++ + + VV LS VS + + + +++ L+PG++V +VQ + G+ L
Sbjct: 239 LNCIIQEVKGSGGVVSLSIGNSEVSAAIATEEQNWTLNNLLPGLVVKAQVQKVTPLGLTL 298
Query: 340 SFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNR 399
FL++FTG VD HL T + N + V A +L V P +R V L+L P L
Sbjct: 299 KFLSFFTGLVDFMHLDPKKAGTYFSN-----QPVRACVLCVHPRTRDVRLSLRPTFLQPG 353
Query: 400 APPSHV---KVGDIYDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKK 456
P + + ++G + + + T AY + ++ + +
Sbjct: 354 RPLTGLSCQQLGAVLEDVPVQGFFGNAGATFRLKD---GTLAYARFNHLSNSKKAFKPET 410
Query: 457 YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 516
+K G+ + RI+ + ++ + L+ S E + D+KPG +VKGKV+ + +G +V
Sbjct: 411 FKPGNIHKCRIIDYSRMDEMVLLSLRTSVIEAQFLRYHDIKPGALVKGKVLTIKPYGMLV 470
Query: 517 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKL 574
++ L P H+++ + P KK+ VG E+ RVL ++KR+ +T KKTLV+SKL
Sbjct: 471 NMGREIRGLVPPMHLADILMKNPEKKYHVGDEVKCRVLLCDPEAKRLMMTLKKTLVESKL 530
Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
++ YA+A L THG+I +++ +GC V+FYN VQG P+ EL + +P S Q
Sbjct: 531 PAITCYADAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPESGVVSCQ 590
Query: 635 VVKCRIMSSIPASRRINLSFMMK--PTRVSEDXXXXXXXXXXXXXXXXXXXXXXXX---- 688
VVK +++ P+ ++ LSF + P + SE
Sbjct: 591 VVKVVVLNCEPSKEKMLLSFRLSSDPKKESEGHSQKKKRALTAGQLVDVKVLDKTKDGLE 650
Query: 689 -XIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVL-DNESSNLLLSAKYSLI 746
+ + +PT HL+DH+ ++ ++ ++ G ++L L + E N LL K +L+
Sbjct: 651 VAVLPHNIRAFLPTPHLSDHVANSPLLYHWLQAGDVLHRVLCLSETEERNELLCRKPALV 710
Query: 747 NSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 804
++ + Q P S IHP ++ G+V +I + G F++F L+G AP++ D S
Sbjct: 711 SAVEGGQDPKSFSEIHPGMLLIGFVRSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSD 770
Query: 805 TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD---ASFMQEHFLLEEKIAMLQSSKH 861
+ GQ+V + + +V+ E R+ LSL+ S C+ D S + LEE+ + +
Sbjct: 771 HFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCTLGDQATTSLLLLSQCLEEQQGVRSLMSN 830
Query: 862 NGSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESG 917
S L + + G V++ +V E + G V+ F E V G + + + AG VESG
Sbjct: 831 RDSVLIQTLAEMTPGMVLDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAGQEVESG 888
Query: 918 SVIQAAILDVAKAERLVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAI 977
+ IL+V + V +SL+ ++R + G +Q A+
Sbjct: 889 QKKKVVILNVDMLKLEVHVSLRRDLVNRRTKKLRKG---------------GEYQ---AV 930
Query: 978 VEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGR 1036
V+ ++E + V SL E H ++ S N T +F ++ GQ V T+ T G
Sbjct: 931 VQHLEETFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLSTTEPGVT-GL 989
Query: 1037 LLLL----LKAIXXXXXXXXXXXXXXXXYD--------------VGSLVQAEITEIKPLE 1078
LL + K D +G +V + IKP
Sbjct: 990 LLAVEGPAAKRTMRQTRKDSETVDEDEEVDPALVVGTVKKHTLSIGDMVTGTVKSIKPTH 1049
Query: 1079 LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWEL 1138
+ + G G IH + + DD V + + K+G+ VTAR+I DMK +
Sbjct: 1050 VVVTLEDGIVGCIHASHILDDVP-VGTSPTTKLKVGKKVTARVIGGR---DMKTFKFLPI 1105
Query: 1139 SIKPSMLTVSEIGSKL--LFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1196
S + T+ E+ + L E+ ++ + K+ A T++ LK + ++
Sbjct: 1106 SHPRFIRTIPELSVRPSELKEDGHTALNTHSVSPLEKIKQYKAGQTVTCFLK-KYNVVKK 1164
Query: 1197 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1256
E + + R + L ++ K+L+ + FQ G + K + D+ + F
Sbjct: 1165 WLEVEIAPDIRGRIPL--------LLMSLSFKVLKHPDKKFQIGQALKATVVGPDSSKAF 1216
Query: 1257 I-------HE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
+ H+ G++ GR+ K+ + GL+V G+V+ + + PL +
Sbjct: 1217 LCLSLIGPHKMEKGEVAMGRVVKV-TPKEGLMVSFPFGKIGKVNIFHVSDSFSETPLETF 1275
Query: 1307 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1366
+ + +C VL + V + LSLRSS TN S VD P + +D+
Sbjct: 1276 NLKKIERCYVLSNAGPV-----LTLSLRSS-----RTNPDTKSKIVD-P--EINSTQDIE 1322
Query: 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP------EKEFPIGKLVAG 1420
+++GYVK++ G + L + S++S SP +K P GKL+
Sbjct: 1323 EGQLLRGYVKSIQPSGVLLGLGPSVTGLARYSHVSQ---HSPTRNALYDKYLPEGKLLTA 1379
Query: 1421 RVLSVEPLSKRVEVTLKTSDS 1441
+VLS+ VE++ D+
Sbjct: 1380 KVLSLNRRENLVELSFLPGDT 1400
|
|
| UNIPROTKB|F1S843 LOC100157027 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 916 (327.5 bits), Expect = 1.5e-144, Sum P(3) = 1.5e-144
Identities = 368/1460 (25%), Positives = 632/1460 (43%)
Query: 54 FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHXXXXXXXXXTERKANETVDDLGSLFGD 113
FPRGG + + E+ + V+ + L +K+ + + L D
Sbjct: 8 FPRGGTRKIRKSEKT-LQQSVEQD------NLFDISTEEESTKRKKSQKEPATIKKLKTD 60
Query: 114 GI-SGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXIL 171
S K R +I +++ GM++ G V EVNE +LVI
Sbjct: 61 KRESSKFVREKFEILNEESLCEGMRILGCVKEVNELELVISLPNGLQGCVQVTEICDAYT 120
Query: 172 D--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXX 224
NE A E+ L LP +F G LV C+V L K GK+ +
Sbjct: 121 KKLNEQVAQEEPLQDLVGLPELFSPGMLVRCVVSSLGITKS--GKKDVKLSLNPKNVNKV 178
Query: 225 XXXETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLL 279
E ++ GM+LT V S+EDHGY++ G+ FLP E N +K G
Sbjct: 179 LNPEALKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKDAKLKVGQY 238
Query: 280 LQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVML 339
L +++ + + VV LS VS + + + +++ L+PG++V +VQ + G+ L
Sbjct: 239 LNCIIQEVKGSGGVVSLSIGNSEVSAAIATEEQNWTLNNLLPGLVVKAQVQKVTPLGLTL 298
Query: 340 SFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNR 399
FL++FTG VD HL T + N + V A +L V P +R V L+L P L
Sbjct: 299 KFLSFFTGLVDFMHLDPKKAGTYFSN-----QPVRACVLCVHPRTRDVRLSLRPTFLQPG 353
Query: 400 APPSHV---KVGDIYDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKK 456
P + + ++G + + + T AY + ++ + +
Sbjct: 354 RPLTGLSCQQLGAVLEDVPVQGFFGNAGATFRLKD---GTLAYARFNHLSNSKKAFKPET 410
Query: 457 YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 516
+K G+ + RI+ + ++ + L+ S E + D+KPG +VKGKV+ + +G +V
Sbjct: 411 FKPGNIHKCRIIDYSRMDEMVLLSLRTSVIEAQFLRYHDIKPGALVKGKVLTIKPYGMLV 470
Query: 517 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKL 574
++ L P H+++ + P KK+ VG E+ RVL ++KR+ +T KKTLV+SKL
Sbjct: 471 NMGREIRGLVPPMHLADILMKNPEKKYHVGDEVKCRVLLCDPEAKRLMMTLKKTLVESKL 530
Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
++ YA+A L THG+I +++ +GC V+FYN VQG P+ EL + +P S Q
Sbjct: 531 PAITCYADAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPESGVVSCQ 590
Query: 635 VVKCRIMSSIPASRRINLSFMMK--PTRVSEDXXXXXXXXXXXXXXXXXXXXXXXX---- 688
VVK +++ P+ ++ LSF + P + SE
Sbjct: 591 VVKVVVLNCEPSKEKMLLSFRLSSDPKKESEGHSQKKKRALTAGQLVDVKVLDKTKDGLE 650
Query: 689 -XIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN 747
+ + +PT HL+DH+ ++ ++ ++ G ++L L +LL K +L++
Sbjct: 651 VAVLPHNIRAFLPTPHLSDHVANSPLLYHWLQAGDVLHRVLCLSETEGRVLLCRKPALVS 710
Query: 748 SAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 805
+ + Q P S IHP ++ G+V +I + G F++F L+G AP++ D S
Sbjct: 711 AVEGGQDPKSFSEIHPGMLLIGFVRSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDH 770
Query: 806 YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD---ASFMQEHFLLEEKIAMLQSSKHN 862
+ GQ+V + + +V+ E R+ LSL+ S C+ D S + LEE+ + +
Sbjct: 771 FVEGQTVVAKVTNVDEEKQRMLLSLRLSDCTLGDQATTSLLLLSQCLEEQQGVRSLMSNR 830
Query: 863 GSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGS 918
S L + + G V++ +V E + G V+ F E V G + + + AG VESG
Sbjct: 831 DSVLIQTLAEMTPGMVLDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAGQEVESGQ 888
Query: 919 VIQAAILDVAKAERLVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIV 978
+ IL+V + V +SL+ ++R + G +Q A+V
Sbjct: 889 KKKVVILNVDMLKLEVHVSLRRDLVNRRTKKLRKG---------------GEYQ---AVV 930
Query: 979 EIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRL 1037
+ ++E + V SL E H ++ S N T +F ++ GQ V T+ T G L
Sbjct: 931 QHLEETFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLSTTEPGVT-GLL 989
Query: 1038 LLL----LKAIXXXXXXXXXXXXXXXXYD--------------VGSLVQAEITEIKPLEL 1079
L + K D +G +V + IKP +
Sbjct: 990 LAVEGPAAKRTMRQTRKDSETVDEDEEVDPALVVGTVKKHTLSIGDMVTGTVKSIKPTHV 1049
Query: 1080 RLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELS 1139
+ G G IH + + DD V + + K+G+ VTAR+I DMK +S
Sbjct: 1050 VVTLEDGIVGCIHASHILDDVP-VGTSPTTKLKVGKKVTARVIGGR---DMKTFKFLPIS 1105
Query: 1140 IKPSMLTVSEIGSKL--LFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSA 1197
+ T+ E+ + L E+ ++ + K+ A T++ LK + ++
Sbjct: 1106 HPRFIRTIPELSVRPSELKEDGHTALNTHSVSPLEKIKQYKAGQTVTCFLK-KYNVVKKW 1164
Query: 1198 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1257
E + + R + L ++ K+L+ + FQ G + K + D+ + F+
Sbjct: 1165 LEVEIAPDIRGRIPL--------LLMSLSFKVLKHPDKKFQIGQALKATVVGPDSSKAFL 1216
Query: 1258 -------HE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYD 1307
H+ G++ GR+ K+ + GL+V G+V+ + + PL ++
Sbjct: 1217 CLSLIGPHKMEKGEVAMGRVVKV-TPKEGLMVSFPFGKIGKVNIFHVSDSFSETPLETFN 1275
Query: 1308 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1367
+ +C VL + V + LSLRSS TN S VD P + +D+
Sbjct: 1276 LKKIERCYVLSNAGPV-----LTLSLRSS-----RTNPDTKSKIVD-P--EINSTQDIEE 1322
Query: 1368 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP------EKEFPIGKLVAGR 1421
+++GYVK++ G + L + S++S SP +K P GKL+ +
Sbjct: 1323 GQLLRGYVKSIQPSGVLLGLGPSVTGLARYSHVSQ---HSPTRNALYDKYLPEGKLLTAK 1379
Query: 1422 VLSVEPLSKRVEVTLKTSDS 1441
VLS+ VE++ D+
Sbjct: 1380 VLSLNRRENLVELSFLPGDT 1399
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1924 | |||
| cd05708 | 77 | cd05708, S1_Rrp5_repeat_sc12, S1_Rrp5_repeat_sc12: | 1e-29 | |
| COG0539 | 541 | COG0539, RpsA, Ribosomal protein S1 [Translation, | 7e-29 | |
| cd04461 | 83 | cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs | 5e-27 | |
| COG0539 | 541 | COG0539, RpsA, Ribosomal protein S1 [Translation, | 1e-26 | |
| COG0539 | 541 | COG0539, RpsA, Ribosomal protein S1 [Translation, | 3e-25 | |
| COG0539 | 541 | COG0539, RpsA, Ribosomal protein S1 [Translation, | 9e-25 | |
| TIGR00717 | 516 | TIGR00717, rpsA, ribosomal protein S1 | 4e-24 | |
| COG0539 | 541 | COG0539, RpsA, Ribosomal protein S1 [Translation, | 5e-24 | |
| cd05694 | 74 | cd05694, S1_Rrp5_repeat_hs2_sc2, S1_Rrp5_repeat_hs | 2e-23 | |
| cd05698 | 70 | cd05698, S1_Rrp5_repeat_hs6_sc5, S1_Rrp5_repeat_hs | 4e-23 | |
| PRK06299 | 565 | PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | 4e-23 | |
| PRK06676 | 390 | PRK06676, rpsA, 30S ribosomal protein S1; Reviewed | 8e-22 | |
| COG0539 | 541 | COG0539, RpsA, Ribosomal protein S1 [Translation, | 2e-21 | |
| cd05703 | 73 | cd05703, S1_Rrp5_repeat_hs12_sc9, S1_Rrp5_repeat_h | 2e-21 | |
| cd05695 | 66 | cd05695, S1_Rrp5_repeat_hs3, S1_Rrp5_repeat_hs3: R | 4e-21 | |
| TIGR00717 | 516 | TIGR00717, rpsA, ribosomal protein S1 | 2e-19 | |
| COG0539 | 541 | COG0539, RpsA, Ribosomal protein S1 [Translation, | 4e-19 | |
| TIGR00717 | 516 | TIGR00717, rpsA, ribosomal protein S1 | 4e-18 | |
| PRK00087 | 647 | PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl d | 5e-18 | |
| cd05702 | 70 | cd05702, S1_Rrp5_repeat_hs11_sc8, S1_Rrp5_repeat_h | 8e-18 | |
| PRK06299 | 565 | PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | 7e-17 | |
| smart00316 | 72 | smart00316, S1, Ribosomal protein S1-like RNA-bind | 7e-17 | |
| TIGR00717 | 516 | TIGR00717, rpsA, ribosomal protein S1 | 1e-16 | |
| cd05693 | 100 | cd05693, S1_Rrp5_repeat_hs1_sc1, S1_Rrp5_repeat_hs | 1e-16 | |
| PRK06676 | 390 | PRK06676, rpsA, 30S ribosomal protein S1; Reviewed | 2e-16 | |
| pfam00575 | 74 | pfam00575, S1, S1 RNA binding domain | 3e-16 | |
| cd05707 | 68 | cd05707, S1_Rrp5_repeat_sc11, S1_Rrp5_repeat_sc11: | 8e-15 | |
| cd05688 | 68 | cd05688, S1_RPS1_repeat_ec3, S1_RPS1_repeat_ec3: R | 1e-14 | |
| PRK06299 | 565 | PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | 3e-14 | |
| PRK06299 | 565 | PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | 4e-14 | |
| TIGR00717 | 516 | TIGR00717, rpsA, ribosomal protein S1 | 5e-14 | |
| COG0539 | 541 | COG0539, RpsA, Ribosomal protein S1 [Translation, | 7e-14 | |
| cd04461 | 83 | cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs | 1e-13 | |
| cd05692 | 69 | cd05692, S1_RPS1_repeat_hs4, S1_RPS1_repeat_hs4: R | 1e-13 | |
| PRK13806 | 491 | PRK13806, rpsA, 30S ribosomal protein S1; Provisio | 1e-13 | |
| PRK11824 | 693 | PRK11824, PRK11824, polynucleotide phosphorylase/p | 3e-13 | |
| COG0539 | 541 | COG0539, RpsA, Ribosomal protein S1 [Translation, | 5e-13 | |
| PRK07899 | 486 | PRK07899, rpsA, 30S ribosomal protein S1; Reviewed | 5e-13 | |
| PRK06299 | 565 | PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | 9e-13 | |
| smart00316 | 72 | smart00316, S1, Ribosomal protein S1-like RNA-bind | 2e-12 | |
| COG1098 | 129 | COG1098, VacB, Predicted RNA binding protein (cont | 5e-12 | |
| TIGR00717 | 516 | TIGR00717, rpsA, ribosomal protein S1 | 6e-12 | |
| PRK08059 | 123 | PRK08059, PRK08059, general stress protein 13; Val | 6e-12 | |
| cd05698 | 70 | cd05698, S1_Rrp5_repeat_hs6_sc5, S1_Rrp5_repeat_hs | 1e-11 | |
| PRK06299 | 565 | PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | 1e-11 | |
| cd00164 | 65 | cd00164, S1_like, S1_like: Ribosomal protein S1-li | 1e-11 | |
| cd00164 | 65 | cd00164, S1_like, S1_like: Ribosomal protein S1-li | 1e-11 | |
| cd05684 | 79 | cd05684, S1_DHX8_helicase, S1_DHX8_helicase: The N | 2e-11 | |
| PRK07400 | 318 | PRK07400, PRK07400, 30S ribosomal protein S1; Revi | 3e-11 | |
| smart00316 | 72 | smart00316, S1, Ribosomal protein S1-like RNA-bind | 8e-11 | |
| smart00316 | 72 | smart00316, S1, Ribosomal protein S1-like RNA-bind | 8e-11 | |
| PRK13806 | 491 | PRK13806, rpsA, 30S ribosomal protein S1; Provisio | 9e-11 | |
| cd04471 | 83 | cd04471, S1_RNase_R, S1_RNase_R: RNase R C-termina | 9e-11 | |
| PRK00087 | 647 | PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl d | 2e-10 | |
| smart00316 | 72 | smart00316, S1, Ribosomal protein S1-like RNA-bind | 2e-10 | |
| cd04461 | 83 | cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs | 3e-10 | |
| COG1093 | 269 | COG1093, SUI2, Translation initiation factor 2, al | 4e-10 | |
| cd04452 | 76 | cd04452, S1_IF2_alpha, S1_IF2_alpha: The alpha sub | 4e-10 | |
| PRK03987 | 262 | PRK03987, PRK03987, translation initiation factor | 4e-10 | |
| COG0539 | 541 | COG0539, RpsA, Ribosomal protein S1 [Translation, | 5e-10 | |
| TIGR00717 | 516 | TIGR00717, rpsA, ribosomal protein S1 | 6e-10 | |
| cd05690 | 69 | cd05690, S1_RPS1_repeat_ec5, S1_RPS1_repeat_ec5: R | 6e-10 | |
| COG1185 | 692 | COG1185, Pnp, Polyribonucleotide nucleotidyltransf | 6e-10 | |
| cd05697 | 69 | cd05697, S1_Rrp5_repeat_hs5, S1_Rrp5_repeat_hs5: R | 7e-10 | |
| PRK12269 | 863 | PRK12269, PRK12269, bifunctional cytidylate kinase | 8e-10 | |
| PRK12269 | 863 | PRK12269, PRK12269, bifunctional cytidylate kinase | 1e-09 | |
| cd04461 | 83 | cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs | 2e-09 | |
| COG2183 | 780 | COG2183, Tex, Transcriptional accessory protein [T | 2e-09 | |
| cd05697 | 69 | cd05697, S1_Rrp5_repeat_hs5, S1_Rrp5_repeat_hs5: R | 3e-09 | |
| cd05685 | 68 | cd05685, S1_Tex, S1_Tex: The C-terminal S1 domain | 3e-09 | |
| PRK06299 | 565 | PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | 4e-09 | |
| cd05708 | 77 | cd05708, S1_Rrp5_repeat_sc12, S1_Rrp5_repeat_sc12: | 5e-09 | |
| TIGR02063 | 709 | TIGR02063, RNase_R, ribonuclease R | 6e-09 | |
| TIGR03591 | 684 | TIGR03591, polynuc_phos, polyribonucleotide nucleo | 7e-09 | |
| pfam00575 | 74 | pfam00575, S1, S1 RNA binding domain | 9e-09 | |
| PRK12269 | 863 | PRK12269, PRK12269, bifunctional cytidylate kinase | 9e-09 | |
| PRK06299 | 565 | PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | 1e-08 | |
| PRK13806 | 491 | PRK13806, rpsA, 30S ribosomal protein S1; Provisio | 2e-08 | |
| PRK05807 | 136 | PRK05807, PRK05807, hypothetical protein; Provisio | 2e-08 | |
| cd05698 | 70 | cd05698, S1_Rrp5_repeat_hs6_sc5, S1_Rrp5_repeat_hs | 3e-08 | |
| PRK06676 | 390 | PRK06676, rpsA, 30S ribosomal protein S1; Reviewed | 3e-08 | |
| cd05691 | 73 | cd05691, S1_RPS1_repeat_ec6, S1_RPS1_repeat_ec6: R | 3e-08 | |
| cd00164 | 65 | cd00164, S1_like, S1_like: Ribosomal protein S1-li | 4e-08 | |
| COG2183 | 780 | COG2183, Tex, Transcriptional accessory protein [T | 6e-08 | |
| cd04472 | 68 | cd04472, S1_PNPase, S1_PNPase: Polynucleotide phos | 8e-08 | |
| COG0539 | 541 | COG0539, RpsA, Ribosomal protein S1 [Translation, | 9e-08 | |
| cd04461 | 83 | cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs | 1e-07 | |
| TIGR00717 | 516 | TIGR00717, rpsA, ribosomal protein S1 | 1e-07 | |
| cd05698 | 70 | cd05698, S1_Rrp5_repeat_hs6_sc5, S1_Rrp5_repeat_hs | 1e-07 | |
| PRK07252 | 120 | PRK07252, PRK07252, hypothetical protein; Provisio | 1e-07 | |
| PRK00087 | 647 | PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl d | 2e-07 | |
| PRK07899 | 486 | PRK07899, rpsA, 30S ribosomal protein S1; Reviewed | 2e-07 | |
| cd00164 | 65 | cd00164, S1_like, S1_like: Ribosomal protein S1-li | 2e-07 | |
| cd00164 | 65 | cd00164, S1_like, S1_like: Ribosomal protein S1-li | 2e-07 | |
| cd05696 | 71 | cd05696, S1_Rrp5_repeat_hs4, S1_Rrp5_repeat_hs4: R | 4e-07 | |
| cd05705 | 74 | cd05705, S1_Rrp5_repeat_hs14, S1_Rrp5_repeat_hs14: | 5e-07 | |
| PRK13806 | 491 | PRK13806, rpsA, 30S ribosomal protein S1; Provisio | 6e-07 | |
| COG0557 | 706 | COG0557, VacB, Exoribonuclease R [Transcription] | 6e-07 | |
| PRK00087 | 647 | PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl d | 7e-07 | |
| smart00316 | 72 | smart00316, S1, Ribosomal protein S1-like RNA-bind | 1e-06 | |
| smart00316 | 72 | smart00316, S1, Ribosomal protein S1-like RNA-bind | 2e-06 | |
| cd05693 | 100 | cd05693, S1_Rrp5_repeat_hs1_sc1, S1_Rrp5_repeat_hs | 2e-06 | |
| cd05704 | 72 | cd05704, S1_Rrp5_repeat_hs13, S1_Rrp5_repeat_hs13: | 2e-06 | |
| PRK06676 | 390 | PRK06676, rpsA, 30S ribosomal protein S1; Reviewed | 3e-06 | |
| PRK13806 | 491 | PRK13806, rpsA, 30S ribosomal protein S1; Provisio | 3e-06 | |
| PRK12269 | 863 | PRK12269, PRK12269, bifunctional cytidylate kinase | 3e-06 | |
| cd05686 | 73 | cd05686, S1_pNO40, S1_pNO40: pNO40 , S1-like RNA-b | 5e-06 | |
| PRK06299 | 565 | PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | 7e-06 | |
| COG5107 | 660 | COG5107, RNA14, Pre-mRNA 3'-end processing (cleava | 7e-06 | |
| PRK12269 | 863 | PRK12269, PRK12269, bifunctional cytidylate kinase | 8e-06 | |
| cd05689 | 72 | cd05689, S1_RPS1_repeat_ec4, S1_RPS1_repeat_ec4: R | 9e-06 | |
| PRK00087 | 647 | PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl d | 1e-05 | |
| pfam00575 | 74 | pfam00575, S1, S1 RNA binding domain | 1e-05 | |
| PLN00207 | 891 | PLN00207, PLN00207, polyribonucleotide nucleotidyl | 1e-05 | |
| TIGR00717 | 516 | TIGR00717, rpsA, ribosomal protein S1 | 2e-05 | |
| PRK06299 | 565 | PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | 2e-05 | |
| pfam00575 | 74 | pfam00575, S1, S1 RNA binding domain | 3e-05 | |
| PRK06676 | 390 | PRK06676, rpsA, 30S ribosomal protein S1; Reviewed | 4e-05 | |
| cd05691 | 73 | cd05691, S1_RPS1_repeat_ec6, S1_RPS1_repeat_ec6: R | 4e-05 | |
| cd05703 | 73 | cd05703, S1_Rrp5_repeat_hs12_sc9, S1_Rrp5_repeat_h | 5e-05 | |
| cd05685 | 68 | cd05685, S1_Tex, S1_Tex: The C-terminal S1 domain | 5e-05 | |
| pfam00575 | 74 | pfam00575, S1, S1 RNA binding domain | 7e-05 | |
| pfam00575 | 74 | pfam00575, S1, S1 RNA binding domain | 8e-05 | |
| PRK13806 | 491 | PRK13806, rpsA, 30S ribosomal protein S1; Provisio | 8e-05 | |
| cd05706 | 73 | cd05706, S1_Rrp5_repeat_sc10, S1_Rrp5_repeat_sc10: | 8e-05 | |
| cd05789 | 86 | cd05789, S1_Rrp4, S1_Rrp4: Rrp4 S1-like RNA-bindin | 9e-05 | |
| cd05697 | 69 | cd05697, S1_Rrp5_repeat_hs5, S1_Rrp5_repeat_hs5: R | 1e-04 | |
| PRK11642 | 813 | PRK11642, PRK11642, exoribonuclease R; Provisional | 1e-04 | |
| COG1098 | 129 | COG1098, VacB, Predicted RNA binding protein (cont | 2e-04 | |
| cd05698 | 70 | cd05698, S1_Rrp5_repeat_hs6_sc5, S1_Rrp5_repeat_hs | 3e-04 | |
| cd05707 | 68 | cd05707, S1_Rrp5_repeat_sc11, S1_Rrp5_repeat_sc11: | 3e-04 | |
| PRK08582 | 139 | PRK08582, PRK08582, hypothetical protein; Provisio | 3e-04 | |
| cd05692 | 69 | cd05692, S1_RPS1_repeat_hs4, S1_RPS1_repeat_hs4: R | 5e-04 | |
| cd05707 | 68 | cd05707, S1_Rrp5_repeat_sc11, S1_Rrp5_repeat_sc11: | 6e-04 | |
| cd05707 | 68 | cd05707, S1_Rrp5_repeat_sc11, S1_Rrp5_repeat_sc11: | 6e-04 | |
| TIGR00358 | 654 | TIGR00358, 3_prime_RNase, VacB and RNase II family | 6e-04 | |
| PRK07899 | 486 | PRK07899, rpsA, 30S ribosomal protein S1; Reviewed | 7e-04 | |
| cd04461 | 83 | cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs | 8e-04 | |
| PRK06299 | 565 | PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | 8e-04 | |
| cd05702 | 70 | cd05702, S1_Rrp5_repeat_hs11_sc8, S1_Rrp5_repeat_h | 9e-04 | |
| smart00316 | 72 | smart00316, S1, Ribosomal protein S1-like RNA-bind | 0.001 | |
| COG1185 | 692 | COG1185, Pnp, Polyribonucleotide nucleotidyltransf | 0.001 | |
| cd05697 | 69 | cd05697, S1_Rrp5_repeat_hs5, S1_Rrp5_repeat_hs5: R | 0.001 | |
| PRK12269 | 863 | PRK12269, PRK12269, bifunctional cytidylate kinase | 0.001 | |
| pfam05843 | 271 | pfam05843, Suf, Suppressor of forked protein (Suf) | 0.001 | |
| PRK04163 | 235 | PRK04163, PRK04163, exosome complex RNA-binding pr | 0.001 | |
| PRK06676 | 390 | PRK06676, rpsA, 30S ribosomal protein S1; Reviewed | 0.002 | |
| COG1098 | 129 | COG1098, VacB, Predicted RNA binding protein (cont | 0.002 | |
| cd05707 | 68 | cd05707, S1_Rrp5_repeat_sc11, S1_Rrp5_repeat_sc11: | 0.003 | |
| cd05706 | 73 | cd05706, S1_Rrp5_repeat_sc10, S1_Rrp5_repeat_sc10: | 0.003 | |
| cd05706 | 73 | cd05706, S1_Rrp5_repeat_sc10, S1_Rrp5_repeat_sc10: | 0.003 | |
| cd05706 | 73 | cd05706, S1_Rrp5_repeat_sc10, S1_Rrp5_repeat_sc10: | 0.003 | |
| cd04461 | 83 | cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs | 0.004 | |
| PRK06676 | 390 | PRK06676, rpsA, 30S ribosomal protein S1; Reviewed | 0.004 |
| >gnl|CDD|240213 cd05708, S1_Rrp5_repeat_sc12, S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 1e-29
Identities = 40/77 (51%), Positives = 59/77 (76%)
Query: 1456 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1515
VG + G ++RVE YG+FI I+ TN+ GLCH SE+S++ V + ++R G+KV+ K+LK
Sbjct: 1 KVGQKIDGTVRRVEDYGVFIDIDGTNVSGLCHKSEISDNRVADASKLFRVGDKVRAKVLK 60
Query: 1516 VDKEKRRISLGMKSSYF 1532
+D EK+RISLG+K+SYF
Sbjct: 61 IDAEKKRISLGLKASYF 77
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 12 (sc12). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 77 |
| >gnl|CDD|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 7e-29
Identities = 94/385 (24%), Positives = 168/385 (43%), Gaps = 57/385 (14%)
Query: 1153 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRR--- 1209
+ + + G V G V ++ + L+ I K++ I + EF
Sbjct: 11 ESDKSDEEFEPGDVVKGTVVSIEKDGVLVDIG--GKSEGVI--------PISEFSNEPVE 60
Query: 1210 --FHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRI 1267
+G V VL + + L L R + + + + ++ G+IV G+I
Sbjct: 61 DVVQVGDEVEVLVLRVEDGEGELVLSRRKAE-------RERAWEKLEEAFENGEIVEGKI 113
Query: 1268 SKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTF 1327
+ + G GL V I + + + + ++ L G+ ++ K+LE+ + R
Sbjct: 114 TGKVKG--GLTVDIEG-VRAFLPGSLV-DVRPVRDLDPL-IGKELEFKILELDKK-RNN- 166
Query: 1328 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
V LS R+ L+ + E + L +V+G VKN+T G F+ +
Sbjct: 167 -VVLSRRAVLE------EERSE-------QREELLNKLEVGEVVEGVVKNITDYGAFVDI 212
Query: 1388 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
+D + +S +S V+ P + +G V +V+S++ RV ++LK Q
Sbjct: 213 G-GVDGLLHISEISWKRVDHPSEVVKVGDEVKVKVISLDEERGRVSLSLK--------QL 263
Query: 1448 EINNLSN----LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1503
E + VGD V G++ + YG F+ IE + GL HVSE+S + +
Sbjct: 264 EEDPWEGIEKKYPVGDKVEGKVTNLTDYGAFVEIEEG-VEGLVHVSEISWTKKNVPSEVV 322
Query: 1504 RAGEKVKVKILKVDKEKRRISLGMK 1528
+ G++V+VK+L +D E+RRISLG+K
Sbjct: 323 KVGQEVEVKVLDIDPERRRISLGLK 347
|
Length = 541 |
| >gnl|CDD|239908 cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 5e-27
Identities = 37/80 (46%), Positives = 45/80 (56%)
Query: 751 QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 810
LP++ S + P VVHGYV NI G FV FLG LTG AP+S D D S + GQ
Sbjct: 4 TLPTNFSDLKPGMVVHGYVRNITPYGVFVEFLGGLTGLAPKSYISDEFVTDPSFGFKKGQ 63
Query: 811 SVRSNILDVNSETGRITLSL 830
SV + + V+ E R LSL
Sbjct: 64 SVTAKVTSVDEEKQRFLLSL 83
|
Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 83 |
| >gnl|CDD|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 1e-26
Identities = 107/474 (22%), Positives = 194/474 (40%), Gaps = 67/474 (14%)
Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
G +V+ + I+ + + G G I I+E +++ V ++G V ++
Sbjct: 21 PGDVVKGTVVSIEKDGVLVDIGGKSEGVIPISEFSNEPVEDV------VQVGDEVEVLVL 74
Query: 1123 AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKL----LFEECDVSIGQRVTGYV---YKVD 1175
+ E + S + FE + ++TG V VD
Sbjct: 75 RVEDG---------EGELVLSRRKAERERAWEKLEEAFEN-GEIVEGKITGKVKGGLTVD 124
Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
E ++A F+ S + +++ IGK + +L ++K++ + L R
Sbjct: 125 IE--------GVRA--FLPGSLVDVRPVRDLDP--LIGKELEFKILELDKKRNNVVLSRR 172
Query: 1236 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1295
+ + + + ++ G++V G + I G V IG + G +H +E+
Sbjct: 173 AVLEEERSEQREELLNKLE----VGEVVEGVVKNITDY--GAFVDIG-GVDGLLHISEIS 225
Query: 1296 NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1355
V P G VK KV+ + V LSL+ + P
Sbjct: 226 WKRVDHPSEVVKVGDEVKVKVISLDE---ERGRVSLSLKQLEED---------------P 267
Query: 1356 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1415
+ +EK V+G V N+T G F+ + ++ V +S +S P + +G
Sbjct: 268 WEGIEKK--YPVGDKVEGKVTNLTDYGAFVEIEEGVEGLVHVSEISWTKKNVPSEVVKVG 325
Query: 1416 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1475
+ V +VL ++P +R+ + LK + VGD+V G++K + +G F+
Sbjct: 326 QEVEVKVLDIDPERRRISLGLK----QLKENPWEEFADKHPVGDVVEGKVKSITDFGAFV 381
Query: 1476 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529
+E + GL H+S+LS D Y+ G++V+ K+L VDKEK RISLG+K
Sbjct: 382 ELEG-GIDGLVHLSDLSWDRPGEEAEKYKKGDEVEAKVLAVDKEKERISLGIKQ 434
|
Length = 541 |
| >gnl|CDD|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 3e-25
Identities = 109/474 (22%), Positives = 189/474 (39%), Gaps = 69/474 (14%)
Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKV 545
FE + + +PG VVKG V++++ G +V G + + P+ SEF +V
Sbjct: 9 FEESDKSDEEFEPGDVVKGTVVSIEKDGVLVDIGGKSEGVIPI---SEFSNEPVEDVVQV 65
Query: 546 GAELVFRVLGVKSKRITVT-HKKTLV--KSKLAILSSYAEATDRLITHGWITKIEKHGCF 602
G E+ VL V+ + ++ ++ + ++ I G IT K G
Sbjct: 66 GDEVEVLVLRVEDGEGELVLSRRKAERERAWEKLEEAFENGE---IVEGKITGKVKGGLT 122
Query: 603 VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTR 660
V GV+ F P S + + P + + +G+ ++ +I+ + LS +++ R
Sbjct: 123 VDI-EGVRAFLPGSLVDVRPVRDLDPL--IGKELEFKILELDKKRNNVVLSRRAVLEEER 179
Query: 661 VSEDDLV----KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMK 715
+ + + ++G +V GVV +T +V G G + ++ ++H
Sbjct: 180 SEQREELLNKLEVGEVVEGVVKNITDYG--AFVDIGGV-DGLLHISEISWKRVDH---PS 233
Query: 716 SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLP--SDASHIHPNSVVHGYVCNI 772
V+K G E +++ LD E + LS K ++ P V G V N+
Sbjct: 234 EVVKVGDEVKVKVISLDEERGRVSLSLK-----QLEEDPWEGIEKKYPVGDKVEGKVTNL 288
Query: 773 IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
+ G FV + G S+ ++ S+ VGQ V +LD++ E RI+L LKQ
Sbjct: 289 TDYGAFVEIEEGVEGLVHVSEISWTKKNVPSEVVKVGQEVEVKVLDIDPERRRISLGLKQ 348
Query: 833 SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV 892
L+E + KH +G V+EGKV DFG V
Sbjct: 349 ----------------LKENPWEEFADKHP-----------VGDVVEGKVKSITDFGAFV 381
Query: 893 SFEEHSDVYGFITHHQL-------AGATVESGSVIQAAILDVAKAERLVDLSLK 939
E D G + L + G ++A +L V K + + L +K
Sbjct: 382 ELEGGID--GLVHLSDLSWDRPGEEAEKYKKGDEVEAKVLAVDKEKERISLGIK 433
|
Length = 541 |
| >gnl|CDD|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 9e-25
Identities = 130/562 (23%), Positives = 221/562 (39%), Gaps = 69/562 (12%)
Query: 402 PSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGS 461
+ GD+ VV +++ G+L+DI + + IS E +E + G
Sbjct: 16 DEEFEPGDVVK-GTVVSIEKD-GVLVDIG---GKSEGVIPIS---EFSNEPVEDVVQVGD 67
Query: 462 CVRVRILGFRHLEGLAT-GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG 520
V V +L EG KA + G +V+GK+ G V
Sbjct: 68 EVEVLVLRVEDGEGELVLSRRKAERERAWEKLEEAFENGEIVEGKITGKVKGGLTVDI-E 126
Query: 521 GVKALCPLPHMSEFEIVKPGKKFK--VGAELVFRVLGV--KSKRITVTHKKTLVKSKLA- 575
GV+A P + V+P + +G EL F++L + K + ++ + L + +
Sbjct: 127 GVRAFLPGSLVD----VRPVRDLDPLIGKELEFKILELDKKRNNVVLSRRAVLEEERSEQ 182
Query: 576 ---ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 632
+L+ + G + I +G FV GV G SE+ PS + V
Sbjct: 183 REELLNKLEVGE---VVEGVVKNITDYGAFVDI-GGVDGLLHISEISWKRVDHPSEVVKV 238
Query: 633 GQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVY 688
G VK +++S R++LS +K + ++ +G V G V +T V
Sbjct: 239 GDEVKVKVISLDEERGRVSLS--LKQLEEDPWEGIEKKYPVGDKVEGKVTNLTDYGAFVE 296
Query: 689 VIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLIN 747
I +G G + ++ V V+K G E + ++L +D E + L K N
Sbjct: 297 -IEEGVE-GLVHVSEISW--TKKNVPSEVVKVGQEVEVKVLDIDPERRRISLGLKQLKEN 352
Query: 748 SAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY 807
++ VV G V +I + G FV G + G S + + ++ Y
Sbjct: 353 PWEEFADK---HPVGDVVEGKVKSITDFGAFVELEGGIDGLVHLSDLSWDRPGEEAEKYK 409
Query: 808 VGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELK 867
G V + +L V+ E RI+L +KQ LEE + E +
Sbjct: 410 KGDEVEAKVLAVDKEKERISLGIKQ----------------LEE----------SPWE-E 442
Query: 868 WVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDV 927
+ E + GSV++GKV D G V V G I +L+ ++ G ++A ++ +
Sbjct: 443 FSEKYKKGSVVKGKVKSVKDKGAFVELGGG--VEGLIRLSELSRDVLKVGDEVEAVVVSI 500
Query: 928 AKAERLVDLSLKTVFIDRFREA 949
K R + LS+K + +EA
Sbjct: 501 DKKNRKILLSIKALERKEEKEA 522
|
Length = 541 |
| >gnl|CDD|233102 TIGR00717, rpsA, ribosomal protein S1 | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 4e-24
Identities = 81/351 (23%), Positives = 139/351 (39%), Gaps = 30/351 (8%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
++K G VVKG V + FGA V GGV L + MS + P + KVG E+ +V
Sbjct: 183 ENLKEGDVVKGVVKNITDFGAFVDL-GGVDGLLHITDMSWKRVKHPSEYVKVGQEVKVKV 241
Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
+ + RI+++ K+ AI + G +T + +G FV G++G
Sbjct: 242 IKFDKEKGRISLSLKQLGEDPWEAIEKKFPVGD---KITGRVTNLTDYGVFVEIEEGIEG 298
Query: 612 FAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK-- 668
SE+ PS + G V+ I+ P RR++L E K
Sbjct: 299 LVHVSEMSWVKKNSHPSKVVKKGDEVEVMILDIDPERRRLSLGLKQCKANPWEQFEEKHP 358
Query: 669 LGSLVSGVVDVVTPNAVVVY-------VIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG 721
+G V+G + +T V +I + +++V+
Sbjct: 359 VGDRVTGKIKKITDFGAFVELEGGIDGLIHLSDISWDKDGREADHLYKKGDEIEAVV--- 415
Query: 722 YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVR 780
L +D E + L K N ++ + + SVV G V I + G FV
Sbjct: 416 ------LAVDKEKKRISLGVKQLTENPWEKF----AAKYKVGSVVKGKVTEIKDFGAFVE 465
Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
G + G S+ + + D + VG V + ++D++ + +++LS+K
Sbjct: 466 LPGGVEGLIRNSELSENRDEDKTDEIKVGDEVEAKVVDIDKKNRKVSLSVK 516
|
This model describes ribosomal protein S1, RpsA. This protein is found in most bacterial genomes in a single copy, but is not present in the Mycoplasmas. It is heterogeneous with respect to the number of repeats of the S1 RNA binding domain described by PFAM model pfam00575: six repeats in E. coli and most other bacteria, four in Bacillus subtilis and some other species. rpsA is an essential gene in E. coli but not in B. subtilis. It is associated with the cytidylate kinase gene cmk in many species, and fused to it in Treponema pallidum. RpsA is proposed (Medline:97323001) to assist in mRNA degradation. This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 516 |
| >gnl|CDD|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 5e-24
Identities = 96/412 (23%), Positives = 176/412 (42%), Gaps = 75/412 (18%)
Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKA 1215
+ +G+ V G V + + A + I + L I + +++ PSE+ +G
Sbjct: 189 KLEVGEVVEGVVKNITDYGAFVDIG-GVDGLLHISEISWKRVDHPSEV------VKVGDE 241
Query: 1216 VTGHVLSINKEKKLLRLVLRPFQ----DGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
V V+S+++E+ + L L+ + +GI K GD V G+++ +
Sbjct: 242 VKVKVISLDEERGRVSLSLKQLEEDPWEGIEKK------------YPVGDKVEGKVTNLT 289
Query: 1272 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1331
G V+I + G VH +E+ + P GQ V+ KVL+I R + L
Sbjct: 290 DY--GAFVEIEEGVEGLVHVSEISWTKKNVPSEVVKVGQEVEVKVLDIDPERR---RISL 344
Query: 1332 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1391
L+ + P + + +V+G VK++T G F+ L +
Sbjct: 345 GLKQLKE---------------NPWEEFA--DKHPVGDVVEGKVKSITDFGAFVELEGGI 387
Query: 1392 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1451
D V LS+LS +++ G V +VL+V+ +R+ + +K +S
Sbjct: 388 DGLVHLSDLSWDRPGEEAEKYKKGDEVEAKVLAVDKEKERISLGIKQ-----LEESPWEE 442
Query: 1452 LSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1510
S + G +V G++K V+ G F+ + + GL +SELS D + + G++V+
Sbjct: 443 FSEKYKKGSVVKGKVKSVKDKGAFVELGG-GVEGLIRLSELSRD-------VLKVGDEVE 494
Query: 1511 VKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSL 1562
++ +DK+ R+I L +K+ +E EA+E + SSL
Sbjct: 495 AVVVSIDKKNRKILLSIKALE------------RKEEKEALESYNKDDDSSL 534
|
Length = 541 |
| >gnl|CDD|240199 cd05694, S1_Rrp5_repeat_hs2_sc2, S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 2e-23
Identities = 36/75 (48%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR 289
+ EGMVL+ V S+EDHGYIL G+P TGFLP+ + S + K G LL VV +
Sbjct: 2 LVEGMVLSGCVSSVEDHGYILDIGIPGTTGFLPKKDAGNFSKL--KVGQLLLCVVEKVKD 59
Query: 290 TRKVVYLSSDPDTVS 304
+VV LS+DP VS
Sbjct: 60 DGRVVSLSADPSKVS 74
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 74 |
| >gnl|CDD|240203 cd05698, S1_Rrp5_repeat_hs6_sc5, S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 4e-23
Identities = 31/69 (44%), Positives = 43/69 (62%)
Query: 587 LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 646
L THG I K++ +GC V FYN V+GF P+SEL +P + VGQVVK +++S P
Sbjct: 2 LKTHGTIVKVKPNGCIVSFYNNVKGFLPKSELSEAFIKDPEEHFRVGQVVKVKVLSCDPE 61
Query: 647 SRRINLSFM 655
+R+ LS
Sbjct: 62 QQRLLLSCK 70
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 70 |
| >gnl|CDD|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 4e-23
Identities = 100/375 (26%), Positives = 158/375 (42%), Gaps = 77/375 (20%)
Query: 1200 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ----DGISDKTVDISNDNMQT 1255
PSE+ ++G V VL +KEKK + L L+ + I K
Sbjct: 241 PSEV------VNVGDEVKVKVLKFDKEKKRVSLGLKQLGEDPWEAIEKK----------- 283
Query: 1256 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL----KNICVSDPLSGYDEGQF 1311
G V G+++ I G V++ + G VH +E+ KN S +S GQ
Sbjct: 284 -YPVGSKVKGKVTNITDY--GAFVELEEGIEGLVHVSEMSWTKKNKHPSKVVS---VGQE 337
Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNS---SDLSTDVDTPGKHLEKIEDLSPN 1368
V+ VLEI R R SL G+ + + K+
Sbjct: 338 VEVMVLEIDEEKR---------RISL-GLKQCKENPWEEFAE------KY-------PVG 374
Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEP 1427
+V+G VKN+T G F+ L +D V LS++S D E + + G V VL V+
Sbjct: 375 DVVEGKVKNITDFGAFVGLEGGIDGLVHLSDISWDKKGEEAVELYKKGDEVEAVVLKVDV 434
Query: 1428 LSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLC 1486
+R+ + +K + + H G IV G + V+ G F+ +E+ + GL
Sbjct: 435 EKERISLGIKQ-----LEEDPFEEFAKKHKKGSIVTGTVTEVKDKGAFVELED-GVEGLI 488
Query: 1487 HVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE 1546
SELS D V++ + + G++V+ K++ +D++ RRISL +K+ E E
Sbjct: 489 RASELSRDRVEDATEVLKVGDEVEAKVINIDRKNRRISLSIKA------------LDEAE 536
Query: 1547 SDEAIEEVGSYNRSS 1561
EAI E S + S
Sbjct: 537 EKEAIAEYNSASDSK 551
|
Length = 565 |
| >gnl|CDD|235851 PRK06676, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 8e-22
Identities = 94/402 (23%), Positives = 185/402 (46%), Gaps = 55/402 (13%)
Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSEL-----QEFQRRFHIGK 1214
+V +G VTG V KV+++ + I + ++ SEL ++ +G
Sbjct: 14 EVEVGDVVTGEVLKVEDKQVFVNIEGY------KVEGVIPISELSNDHIEDINDVVKVGD 67
Query: 1215 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI--SNDNMQTFIHEGDIVGGRISKILS 1272
+ +VL + + L L S + ++ + D ++ EG++V ++++++
Sbjct: 68 ELEVYVLKVEDGEGNLLL---------SKRRLEAEKAWDKLEEKFEEGEVVEVKVTEVVK 118
Query: 1273 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
G GLVV + + G + + + V D S + G+ ++ K++E+ V LS
Sbjct: 119 G--GLVVDVE-GVRGFIPASLISTRFVED-FSDFK-GKTLEVKIIELDPEKN---RVILS 170
Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
R+ ++ + K E + L +V+G V +T G F+ + +D
Sbjct: 171 RRAVVEEERAA-------------KKEELLSSLKEGDVVEGTVARLTDFGAFVDIG-GVD 216
Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
V +S LS VE P + +G+ V +VLS++ ++R+ ++LK D+ +
Sbjct: 217 GLVHISELSHERVEKPSEVVSVGQEVEVKVLSIDWETERISLSLK--DTLPGPWEGV--E 272
Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
L GD++ G +KR+ +G F+ + + GL H+S++S H+ + G++VKVK
Sbjct: 273 EKLPEGDVIEGTVKRLTDFGAFVEVLP-GVEGLVHISQISHKHIATPSEVLEEGQEVKVK 331
Query: 1513 ILKVDKEKRRISLGMK------SSYFKNDADNLQMSSEEESD 1548
+L+V++E++RISL +K + + Q EE
Sbjct: 332 VLEVNEEEKRISLSIKALEEAPAEEEDRREEYRQYELPEEET 373
|
Length = 390 |
| >gnl|CDD|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-21
Identities = 116/575 (20%), Positives = 212/575 (36%), Gaps = 105/575 (18%)
Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
+ G + IEK G V +G P SE +P + VG V+ ++
Sbjct: 24 VVKGTVVSIEKDGVLVDIGGKSEGVIPISEFSNEPV---EDVVQVGDEVEVLVLRVEDGE 80
Query: 648 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
+ LS + + L + G +V G + + V + +G + +P +
Sbjct: 81 GELVLSRRKAERERAWEKLEEAFENGEIVEGKITGKVKGGLTVDI--EGV-RAFLPGSLV 137
Query: 705 -------ADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL-INSAQQLPSDA 756
D L + +++ LD + +N++LS + L ++Q
Sbjct: 138 DVRPVRDLDPLIGKELEFKILE----------LDKKRNNVVLSRRAVLEEERSEQREELL 187
Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
+ + VV G V NI + G FV +G + G S+ + S+ VG V+ +
Sbjct: 188 NKLEVGEVVEGVVKNITDYGAFVD-IGGVDGLLHISEISWKRVDHPSEVVKVGDEVKVKV 246
Query: 817 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
+ ++ E GR++LSLKQ L E+ ++ +G
Sbjct: 247 ISLDEERGRVSLSLKQ---------------LEEDPWEGIEKKYP------------VGD 279
Query: 877 VIEGKVHESNDFGVVVSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAK 929
+EGKV D+G V EE V G + T + V+ G ++ +LD+
Sbjct: 280 KVEGKVTNLTDYGAFVEIEE--GVEGLVHVSEISWTKKNVPSEVVKVGQEVEVKVLDIDP 337
Query: 930 AERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLS 989
R + L LK + N + + V V+ + + +
Sbjct: 338 ERRRISLGLK--------QLKENPWEEFADKHPVGDV-------VEGKVKSITDFGAFVE 382
Query: 990 LPEYNHSIGYASVSDY--NTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISET 1047
L G +SD + +++ G V A V+A+ R+ L +K + E+
Sbjct: 383 LEG--GIDGLVHLSDLSWDRPGEEAEKYKKGDEVEAKVLAVDKEKE--RISLGIKQLEES 438
Query: 1048 ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL 1107
+ Y GS+V+ ++ +K ++ G G G I ++E++ D
Sbjct: 439 PW-----EEFSEKYKKGSVVKGKVKSVKDKGAFVELGGGVEGLIRLSELSRDV------- 486
Query: 1108 FSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKP 1142
K+G V A +++ +K + K LSIK
Sbjct: 487 ---LKVGDEVEAVVVS-IDKKNRKIL----LSIKA 513
|
Length = 541 |
| >gnl|CDD|240208 cd05703, S1_Rrp5_repeat_hs12_sc9, S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 2e-21
Identities = 30/72 (41%), Positives = 47/72 (65%)
Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
GQ VTG+V V E+ LTIS +K ++ +LD + + S L+ +++F IG+A+ V+ +
Sbjct: 1 GQEVTGFVNNVSKEFVWLTISPDVKGRIPLLDLSDDVSVLEHPEKKFPIGQALKAKVVGV 60
Query: 1224 NKEKKLLRLVLR 1235
+KE KLLRL R
Sbjct: 61 DKEHKLLRLSAR 72
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 73 |
| >gnl|CDD|240200 cd05695, S1_Rrp5_repeat_hs3, S1_Rrp5_repeat_hs3: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 4e-21
Identities = 33/69 (47%), Positives = 49/69 (71%), Gaps = 3/69 (4%)
Query: 322 GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD 381
GM+V+ RV+ +L NG++L FL+ FTGTVD HL + K+ Y + +KV ARIL+VD
Sbjct: 1 GMLVNARVKKVLSNGLILDFLSSFTGTVDFLHLDPEKSS---KSTYKEGQKVRARILYVD 57
Query: 382 PTSRAVGLT 390
P+++ VGL+
Sbjct: 58 PSTKVVGLS 66
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 3 (hs3). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 66 |
| >gnl|CDD|233102 TIGR00717, rpsA, ribosomal protein S1 | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 2e-19
Identities = 85/378 (22%), Positives = 158/378 (41%), Gaps = 56/378 (14%)
Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY----EPSELQEFQRRFHIGKAV 1216
+ G V G V + ++ + L I D ++ PSE + G+ V
Sbjct: 185 LKEGDVVKGVVKNIT-DFGAFVDLGGVDGLLHITDMSWKRVKHPSEYVKV------GQEV 237
Query: 1217 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1276
V+ +KEK + L L+ D I GD + GR++ + G
Sbjct: 238 KVKVIKFDKEKGRISLSLKQLG---EDPWEAIEKK-----FPVGDKITGRVTNLTDY--G 287
Query: 1277 LVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1333
+ V+I + G VH +E+ K S P +G V+ +L+I R + L L
Sbjct: 288 VFVEIEEGIEGLVHVSEMSWVKK--NSHPSKVVKKGDEVEVMILDIDPERR---RLSLGL 342
Query: 1334 RSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP-NMIVQGYVKNVTSKGCFIMLSRKLD 1392
+ E+ E+ P V G +K +T G F+ L +D
Sbjct: 343 KQ------------------CKANPWEQFEEKHPVGDRVTGKIKKITDFGAFVELEGGID 384
Query: 1393 AKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1451
+ LS++S D + + G + VL+V+ KR+ + +K +++
Sbjct: 385 GLIHLSDISWDKDGREADHLYKKGDEIEAVVLAVDKEKKRISLGVKQ-----LTENPWEK 439
Query: 1452 LSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1510
+ + VG +V G++ ++ +G F+ + + GL SELSE+ ++ + G++V+
Sbjct: 440 FAAKYKVGSVVKGKVTEIKDFGAFVELPG-GVEGLIRNSELSENRDEDKTDEIKVGDEVE 498
Query: 1511 VKILKVDKEKRRISLGMK 1528
K++ +DK+ R++SL +K
Sbjct: 499 AKVVDIDKKNRKVSLSVK 516
|
This model describes ribosomal protein S1, RpsA. This protein is found in most bacterial genomes in a single copy, but is not present in the Mycoplasmas. It is heterogeneous with respect to the number of repeats of the S1 RNA binding domain described by PFAM model pfam00575: six repeats in E. coli and most other bacteria, four in Bacillus subtilis and some other species. rpsA is an essential gene in E. coli but not in B. subtilis. It is associated with the cytidylate kinase gene cmk in many species, and fused to it in Treponema pallidum. RpsA is proposed (Medline:97323001) to assist in mRNA degradation. This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 516 |
| >gnl|CDD|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 4e-19
Identities = 69/275 (25%), Positives = 119/275 (43%), Gaps = 31/275 (11%)
Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
GD+V G + I G++V IG G + +E N V D + DE
Sbjct: 19 FEPGDVVKGTVVSIEKD--GVLVDIGGKSEGVIPISEFSNEPVEDVVQVGDE-------- 68
Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM-IVQGYV 1375
VE+ + DG S + + EK+E+ N IV+G +
Sbjct: 69 ------------VEVLVLRVEDGEGELVLSRRKAERERA---WEKLEEAFENGEIVEGKI 113
Query: 1376 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435
KG + + A + S + V + IGK + ++L ++ V ++
Sbjct: 114 TGKV-KGGLTVDIEGVRAFLPGSLVDVRPVRDLDPL--IGKELEFKILELDKKRNNVVLS 170
Query: 1436 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH 1495
+ S+ L+ L VG++V G +K + YG F+ I + GL H+SE+S
Sbjct: 171 RRAVLEEERSEQREELLNKLEVGEVVEGVVKNITDYGAFVDIGGVD--GLLHISEISWKR 228
Query: 1496 VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
VD+ + + G++VKVK++ +D+E+ R+SL +K
Sbjct: 229 VDHPSEVVKVGDEVKVKVISLDEERGRVSLSLKQL 263
|
Length = 541 |
| >gnl|CDD|233102 TIGR00717, rpsA, ribosomal protein S1 | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 4e-18
Identities = 112/478 (23%), Positives = 176/478 (36%), Gaps = 93/478 (19%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 550
+ +PG +VKG V+A++ V + P EF +VG E+ +
Sbjct: 14 EETRPGSIVKGTVVAINKDTVFVDVGLKSEGRIP---KEEFLDAPLE--IQVGDEVEVYL 68
Query: 551 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
RV + + K + + + +Y E + I G I K G V NGV+
Sbjct: 69 DRVEDRFGETVLSREKAQRHELWIKLEKAYEEGS---IVEGKIVGKVKGGFIVDL-NGVE 124
Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS------SIPASRRINLSFMMKPTRVSED 664
F P S++ + P + S +G+ +K +I+ +I SRR L R
Sbjct: 125 AFLPGSQVDVKPIKDLDS--LIGKTLKFKIIKLDQKRNNIVVSRRAYLEEERSQAREELL 182
Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM--KSVIKPG- 721
+ +K G +V GVV +T +V G D L H T M K V P
Sbjct: 183 ENLKEGDVVKGVVKNITDFGA--FVDLGGV-----------DGLLHITDMSWKRVKHPSE 229
Query: 722 -YEFDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVC 770
+ Q ++ D E + LS K QL D + G V
Sbjct: 230 YVKVGQEVKVKVIKFDKEKGRISLSLK--------QLGEDPWEAIEKKFPVGDKITGRVT 281
Query: 771 NIIETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
N+ + G FV + G S+ + + + SK G V ILD++ E R++L
Sbjct: 282 NLTDYGVFVEIEEGIEGLVHVSEMSWVKKNSHPSKVVKKGDEVEVMILDIDPERRRLSLG 341
Query: 830 LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFG 889
LKQ + + E+ KH +G + GK+ + DFG
Sbjct: 342 LKQ----------CKANPW--EQFE----EKHP-----------VGDRVTGKIKKITDFG 374
Query: 890 VVVSFEEHSDVYGFITHHQL--------AGATVESGSVIQAAILDVAKAERLVDLSLK 939
V E D G I + A + G I+A +L V K ++ + L +K
Sbjct: 375 AFVELEGGID--GLIHLSDISWDKDGREADHLYKKGDEIEAVVLAVDKEKKRISLGVK 430
|
This model describes ribosomal protein S1, RpsA. This protein is found in most bacterial genomes in a single copy, but is not present in the Mycoplasmas. It is heterogeneous with respect to the number of repeats of the S1 RNA binding domain described by PFAM model pfam00575: six repeats in E. coli and most other bacteria, four in Bacillus subtilis and some other species. rpsA is an essential gene in E. coli but not in B. subtilis. It is associated with the cytidylate kinase gene cmk in many species, and fused to it in Treponema pallidum. RpsA is proposed (Medline:97323001) to assist in mRNA degradation. This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 516 |
| >gnl|CDD|234623 PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 5e-18
Identities = 52/172 (30%), Positives = 89/172 (51%), Gaps = 12/172 (6%)
Query: 1360 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1419
E L +V+G VK +T G F+ + +D + +S +S G VE P +G +
Sbjct: 470 ETWNSLEEGDVVEGEVKRLTDFGAFVDIG-GVDGLLHVSEISWGRVEKPSDVLKVGDEIK 528
Query: 1420 GRVLSVEPLSKRVEVTLKTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFIT 1476
+L ++ +K++ ++LK N VG IV+G++ R+ +G F+
Sbjct: 529 VYILDIDKENKKLSLSLK-------KLLPDPWENVEEKYPVGSIVLGKVVRIAPFGAFVE 581
Query: 1477 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
+E + GL H+S++S +D E + GE+VK KIL+VD E++RI L +K
Sbjct: 582 LE-PGVDGLVHISQISWKRIDKPEDVLSEGEEVKAKILEVDPEEKRIRLSIK 632
|
Length = 647 |
| >gnl|CDD|240207 cd05702, S1_Rrp5_repeat_hs11_sc8, S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 8e-18
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
G LV+A++ +KP +L ++ HGRIH++EV D+ + +N S FKIGQ + AR+I
Sbjct: 1 GDLVKAKVKSVKPTQLNVQLADNVHGRIHVSEVFDEWPD-GKNPLSKFKIGQKIKARVIG 59
Query: 1124 KSNKPDMKK 1132
D K
Sbjct: 60 ---GHDAKT 65
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 11 (hs11) and S. cerevisiae S1 repeat 8 (sc8). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 70 |
| >gnl|CDD|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 7e-17
Identities = 79/291 (27%), Positives = 132/291 (45%), Gaps = 64/291 (21%)
Query: 1257 IHEGDIVGGRISKI--------LSGVGGLVVQIGPHL----YGRV-HFTELKNICVSDPL 1303
+ EG +V G + I L GV GL+ H+ + RV H +E+
Sbjct: 199 LEEGQVVEGVVKNITDYGAFVDLGGVDGLL-----HITDISWKRVNHPSEV--------- 244
Query: 1304 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1363
+ G VK KVL+ + V L L+ L D P + +E +
Sbjct: 245 --VNVGDEVKVKVLKFDK---EKKRVSLGLKQ------------LGED---PWEAIE--K 282
Query: 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRV 1422
V+G V N+T G F+ L ++ V +S +S + P K +G+ V V
Sbjct: 283 KYPVGSKVKGKVTNITDYGAFVELEEGIEGLVHVSEMSWTKKNKHPSKVVSVGQEVEVMV 342
Query: 1423 LSVEPLSKRVEVTLKTSDSRTASQSEIN---NLSNLH-VGDIVIGQIKRVESYGLFITIE 1478
L ++ +R+ + LK Q + N + + VGD+V G++K + +G F+ +E
Sbjct: 343 LEIDEEKRRISLGLK--------QCKENPWEEFAEKYPVGDVVEGKVKNITDFGAFVGLE 394
Query: 1479 NTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
+ GL H+S++S + + +Y+ G++V+ +LKVD EK RISLG+K
Sbjct: 395 G-GIDGLVHLSDISWDKKGEEAVELYKKGDEVEAVVLKVDVEKERISLGIK 444
|
Length = 565 |
| >gnl|CDD|197648 smart00316, S1, Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 7e-17
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1516
VGD+V G + + G F+ + N + GL +SELS+ V + E + + G++VKVK+L V
Sbjct: 2 VGDVVEGTVTEITPGGAFVDLGN-GVEGLIPISELSDKRVKDPEEVLKVGDEVKVKVLSV 60
Query: 1517 DKEKRRISLGMK 1528
D+EK RI L +K
Sbjct: 61 DEEKGRIILSLK 72
|
Length = 72 |
| >gnl|CDD|233102 TIGR00717, rpsA, ribosomal protein S1 | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 1e-16
Identities = 52/170 (30%), Positives = 92/170 (54%), Gaps = 7/170 (4%)
Query: 1360 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1419
E +E+L +V+G VKN+T G F+ L +D + ++++S V+ P + +G+ V
Sbjct: 180 ELLENLKEGDVVKGVVKNITDFGAFVDLG-GVDGLLHITDMSWKRVKHPSEYVKVGQEVK 238
Query: 1420 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1479
+V+ + R+ ++LK I VGD + G++ + YG+F+ IE
Sbjct: 239 VKVIKFDKEKGRISLSLKQLGED--PWEAIEK--KFPVGDKITGRVTNLTDYGVFVEIEE 294
Query: 1480 TNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
+ GL HVSE+S + + + G++V+V IL +D E+RR+SLG+K
Sbjct: 295 -GIEGLVHVSEMSWVKKNSHPSKVVKKGDEVEVMILDIDPERRRLSLGLK 343
|
This model describes ribosomal protein S1, RpsA. This protein is found in most bacterial genomes in a single copy, but is not present in the Mycoplasmas. It is heterogeneous with respect to the number of repeats of the S1 RNA binding domain described by PFAM model pfam00575: six repeats in E. coli and most other bacteria, four in Bacillus subtilis and some other species. rpsA is an essential gene in E. coli but not in B. subtilis. It is associated with the cytidylate kinase gene cmk in many species, and fused to it in Treponema pallidum. RpsA is proposed (Medline:97323001) to assist in mRNA degradation. This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 516 |
| >gnl|CDD|240198 cd05693, S1_Rrp5_repeat_hs1_sc1, S1_Rrp5_repeat_hs1_sc1: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 1e-16
Identities = 40/101 (39%), Positives = 50/101 (49%), Gaps = 12/101 (11%)
Query: 131 ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI------LDNEIEA----NED 180
+S GM + G V E+ + DLVI LP GL G + D LD E E E
Sbjct: 1 LSEGMLVLGQVKEITKLDLVISLPNGLTGYVPITNISDAYTERLEELDEESEEEDDEEEL 60
Query: 181 NLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
L +F VGQLV C V+ LD K GK++I LSL L+
Sbjct: 61 PDLEDLFSVGQLVRCKVVSLDKSKS--GKKRIELSLEPELV 99
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 1 (hs1) and S. cerevisiae S1 repeat 1 (sc1). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 100 |
| >gnl|CDD|235851 PRK06676, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 2e-16
Identities = 75/290 (25%), Positives = 129/290 (44%), Gaps = 49/290 (16%)
Query: 1251 DNMQTFIHEGDIVGGRISKI-----LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSG 1305
N + GD+V G + K+ + G V+ G + +EL N + D
Sbjct: 9 LNSVKEVEVGDVVTGEVLKVEDKQVFVNIEGYKVE------GVIPISELSNDHIEDINDV 62
Query: 1306 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED- 1364
G ++ VL + G ++ LS R L+ K +K+E+
Sbjct: 63 VKVGDELEVYVL---KVEDGEGNLLLSKRR-LEAE----------------KAWDKLEEK 102
Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
+V+ V V KG ++ + + S +S +VE +F GK + +++
Sbjct: 103 FEEGEVVEVKVTEVV-KGGLVVDVEGVRGFIPASLISTRFVEDFS-DF-KGKTLEVKIIE 159
Query: 1425 VEP------LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1478
++P LS+R V + R A + E+ LS+L GD+V G + R+ +G F+ I
Sbjct: 160 LDPEKNRVILSRRAVVEEE----RAAKKEEL--LSSLKEGDVVEGTVARLTDFGAFVDIG 213
Query: 1479 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
+ GL H+SELS + V+ + G++V+VK+L +D E RISL +K
Sbjct: 214 GVD--GLVHISELSHERVEKPSEVVSVGQEVEVKVLSIDWETERISLSLK 261
|
Length = 390 |
| >gnl|CDD|216000 pfam00575, S1, S1 RNA binding domain | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 3e-16
Identities = 28/75 (37%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
GD+V G + RV G F+ + N + G +SE+S+D V++ + + + G++V+VK+
Sbjct: 1 KPEEGDVVKGTVTRVTKGGAFVDLGN-GVEGFIPISEISDDRVEDPDEVLKVGDEVEVKV 59
Query: 1514 LKVDKEKRRISLGMK 1528
LKVDKE+ RI L ++
Sbjct: 60 LKVDKERGRIILSIR 74
|
The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure. Length = 74 |
| >gnl|CDD|240212 cd05707, S1_Rrp5_repeat_sc11, S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 8e-15
Identities = 28/68 (41%), Positives = 50/68 (73%)
Query: 1368 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1427
+V+G+VKN+ + G F+ L R +DA+V +S LSD Y++ +K F +G+LV G+++S++P
Sbjct: 1 GDVVRGFVKNIANNGVFVTLGRGVDARVRVSELSDSYLKDWKKRFKVGQLVKGKIVSIDP 60
Query: 1428 LSKRVEVT 1435
+ R+E+T
Sbjct: 61 DNGRIEMT 68
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 68 |
| >gnl|CDD|240193 cd05688, S1_RPS1_repeat_ec3, S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 1e-14
Identities = 27/70 (38%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Query: 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1516
GD+V G +K + +G F+ + + GL H+S++S V + + G++V+VK+LK+
Sbjct: 1 EGDVVEGTVKSITDFGAFVDLGGVD--GLLHISDMSWGRVKHPSEVVNVGDEVEVKVLKI 58
Query: 1517 DKEKRRISLG 1526
DKE++RISLG
Sbjct: 59 DKERKRISLG 68
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 3 (ec3) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. Length = 68 |
| >gnl|CDD|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 77.5 bits (192), Expect = 3e-14
Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Query: 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1511
L NL G +V G +K + YG F+ + + GL H++++S V++ + G++VKV
Sbjct: 196 LENLEEGQVVEGVVKNITDYGAFVDLGG--VDGLLHITDISWKRVNHPSEVVNVGDEVKV 253
Query: 1512 KILKVDKEKRRISLGMK 1528
K+LK DKEK+R+SLG+K
Sbjct: 254 KVLKFDKEKKRVSLGLK 270
|
Length = 565 |
| >gnl|CDD|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 77.1 bits (191), Expect = 4e-14
Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 11/170 (6%)
Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
+E+L +V+G VKN+T G F+ L +D + ++++S V P + +G V +
Sbjct: 196 LENLEEGQVVEGVVKNITDYGAFVDLG-GVDGLLHITDISWKRVNHPSEVVNVGDEVKVK 254
Query: 1422 VLSVEPLSKRVEVTLK--TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1479
VL + KRV + LK D I VG V G++ + YG F+ +E
Sbjct: 255 VLKFDKEKKRVSLGLKQLGEDP----WEAIE--KKYPVGSKVKGKVTNITDYGAFVELEE 308
Query: 1480 TNLVGLCHVSELSED-HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
+ GL HVSE+S + + G++V+V +L++D+EKRRISLG+K
Sbjct: 309 -GIEGLVHVSEMSWTKKNKHPSKVVSVGQEVEVMVLEIDEEKRRISLGLK 357
|
Length = 565 |
| >gnl|CDD|233102 TIGR00717, rpsA, ribosomal protein S1 | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 5e-14
Identities = 133/574 (23%), Positives = 210/574 (36%), Gaps = 88/574 (15%)
Query: 393 PYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 452
LL + G I + VV +++ + +D+ + + +EE
Sbjct: 4 AQLLEESLKTEETRPGSIV-KGTVVAINKDT-VFVDV--------GLKSEGRIPKEEFLD 53
Query: 453 LEKKYKEGSCVRVRILGFRHLEGLAT-GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
+ + G V V + G KA E + + G +V+GK++
Sbjct: 54 APLEIQVGDEVEVYLDRVEDRFGETVLSREKAQRHELWIKLEKAYEEGSIVEGKIVGKVK 113
Query: 512 FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFK--VGAELVFRVLGVKSKR--ITVTHKK 567
G IV GV+A P + VKP K +G L F+++ + KR I V+ +
Sbjct: 114 GGFIVDL-NGVEAFLPGSQVD----VKPIKDLDSLIGKTLKFKIIKLDQKRNNIVVSRRA 168
Query: 568 TL---VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGC 624
L L + D + G + I G FV GV G +++
Sbjct: 169 YLEEERSQAREELLENLKEGDVV--KGVVKNITDFGAFVDL-GGVDGLLHITDMSWKRVK 225
Query: 625 EPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVT 681
PS VGQ VK +++ RI+LS P E +G ++G V +T
Sbjct: 226 HPSEYVKVGQEVKVKVIKFDKEKGRISLSLKQLGEDPWEAIEKKF-PVGDKITGRVTNLT 284
Query: 682 PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP------GYEFD-QLLVLDNES 734
V V I +G E L H+ + +K P G E + +L +D E
Sbjct: 285 DYGVFVE-IEEG-------IEGLV-HVSEMSWVKKNSHPSKVVKKGDEVEVMILDIDPER 335
Query: 735 SNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 793
L L K N +Q HP V G + I + G FV G + G S
Sbjct: 336 RRLSLGLKQCKANPWEQFEEK----HPVGDRVTGKIKKITDFGAFVELEGGIDGLIHLSD 391
Query: 794 AV-DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEK 852
D + Y G + + +L V+ E RI+L +KQ + +
Sbjct: 392 ISWDKDGREADHLYKKGDEIEAVVLAVDKEKKRISLGVKQLTENPWE------------- 438
Query: 853 IAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA 912
K+ + +GSV++GKV E DFG V V G I + +L+
Sbjct: 439 --------------KFAAKYKVGSVVKGKVTEIKDFGAFVELPG--GVEGLIRNSELSEN 482
Query: 913 TVES-------GSVIQAAILDVAKAERLVDLSLK 939
E G ++A ++D+ K R V LS+K
Sbjct: 483 RDEDKTDEIKVGDEVEAKVVDIDKKNRKVSLSVK 516
|
This model describes ribosomal protein S1, RpsA. This protein is found in most bacterial genomes in a single copy, but is not present in the Mycoplasmas. It is heterogeneous with respect to the number of repeats of the S1 RNA binding domain described by PFAM model pfam00575: six repeats in E. coli and most other bacteria, four in Bacillus subtilis and some other species. rpsA is an essential gene in E. coli but not in B. subtilis. It is associated with the cytidylate kinase gene cmk in many species, and fused to it in Treponema pallidum. RpsA is proposed (Medline:97323001) to assist in mRNA degradation. This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 516 |
| >gnl|CDD|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 7e-14
Identities = 112/573 (19%), Positives = 219/573 (38%), Gaps = 92/573 (16%)
Query: 875 GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQL----AGATVESGSVIQAAILDVAKA 930
G V++G V GV+V S+ G I + V+ G ++ +L V
Sbjct: 22 GDVVKGTVVSIEKDGVLVDIGGKSE--GVIPISEFSNEPVEDVVQVGDEVEVLVLRVEDG 79
Query: 931 ERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNA-IVEIVKENYLVLS 989
E + LS R +A +K + + + V I VK V
Sbjct: 80 EGELVLS---------RRKAERERAWEKLEEAFENG-----EIVEGKITGKVKGGLTV-- 123
Query: 990 LPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETET 1049
+ + S + + L G+ + ++ L ++L +A+ E E
Sbjct: 124 --DIEGVRAFLPGSLVDVRPVRDLDPLIGKELEFKILEL--DKKRNNVVLSRRAVLE-EE 178
Query: 1050 SSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFS 1109
S +R + + +VG +V+ + I + G G G +HI+E++ + V++
Sbjct: 179 RSEQREELLNKLEVGEVVEGVVKNITDYGAFVDIG-GVDGLLHISEISWKR---VDHPSE 234
Query: 1110 NFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSM-LTVSEIGSKLLFEECDVSIGQRVT 1168
K+G V ++I+ D ++ + LS+K I K +G +V
Sbjct: 235 VVKVGDEVKVKVISL----DEERGRV-SLSLKQLEEDPWEGIEKKYP-------VGDKVE 282
Query: 1169 GYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGHVLSIN 1224
G V + + A + I ++ + + + ++ PSE+ +G+ V VL I+
Sbjct: 283 GKVTNLTDYGAFVEIEEGVEGLVHVSEISWTKKNVPSEV------VKVGQEVEVKVLDID 336
Query: 1225 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1284
E++ + L L+ + + + GD+V G++ I G V++
Sbjct: 337 PERRRISLGLK--------QLKENPWEEFADKHPVGDVVEGKVKSITDF--GAFVELEGG 386
Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1344
+ G VH ++L + Y +G V+ KVL + + + L ++
Sbjct: 387 IDGLVHLSDLSWDRPGEEAEKYKKGDEVEAKVLAVDKEKE---RISLGIK---------- 433
Query: 1345 SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1404
L E E +V+G VK+V KG F+ L ++ + LS LS
Sbjct: 434 --QLEESPWE-----EFSEKYKKGSVVKGKVKSVKDKGAFVELGGGVEGLIRLSELSR-- 484
Query: 1405 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1437
+G V V+S++ ++++ +++K
Sbjct: 485 -----DVLKVGDEVEAVVVSIDKKNRKILLSIK 512
|
Length = 541 |
| >gnl|CDD|239908 cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 1e-13
Identities = 27/81 (33%), Positives = 39/81 (48%)
Query: 1356 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1415
G DL P M+V GYV+N+T G F+ L S +SD +V P F G
Sbjct: 3 GTLPTNFSDLKPGMVVHGYVRNITPYGVFVEFLGGLTGLAPKSYISDEFVTDPSFGFKKG 62
Query: 1416 KLVAGRVLSVEPLSKRVEVTL 1436
+ V +V SV+ +R ++L
Sbjct: 63 QSVTAKVTSVDEEKQRFLLSL 83
|
Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 83 |
| >gnl|CDD|240197 cd05692, S1_RPS1_repeat_hs4, S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 1e-13
Identities = 24/71 (33%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
G +V G + R++ +G F+ + + GL H+S+++ V +++ + + G+KVKVK+L +D
Sbjct: 1 GSVVEGTVTRLKPFGAFVELGG-GISGLVHISQIAHKRVKDVKDVLKEGDKVKVKVLSID 59
Query: 1518 KEKRRISLGMK 1528
RISL +K
Sbjct: 60 ARG-RISLSIK 69
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (hs4) of the H. sapiens RPS1 homolog. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. Length = 69 |
| >gnl|CDD|237516 PRK13806, rpsA, 30S ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 1e-13
Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 8/171 (4%)
Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
+E + +V+G V + G F+ L+ ++ V +S LS V+ ++ +G V +
Sbjct: 197 METVKEGDVVEGTVTRLAPFGAFVELAPGVEGMVHISELSWSRVQKADEAVSVGDTVRVK 256
Query: 1422 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN-LHVGDIVIGQIKRVESYGLFITIENT 1480
VL +E K + + S + A + + + L GD V G++ R+ +G F+ I
Sbjct: 257 VLGIERAKKGKGLRISLS-IKQAGGDPWDTVGDRLKAGDKVTGKVVRLAPFGAFVEIL-P 314
Query: 1481 NLVGLCHVSELSEDHVDNI---ETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
+ GL HVSE+S + E + G+ V VKI +D KRRISL ++
Sbjct: 315 GIEGLVHVSEMS--WTRRVNKPEDVVAPGDAVAVKIKDIDPAKRRISLSLR 363
|
Length = 491 |
| >gnl|CDD|236995 PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional | Back alignment and domain information |
|---|
Score = 74.7 bits (185), Expect = 3e-13
Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 1449 INNLSN-LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1507
I ++ VG+I G++ R+ +G F+ I GL H+SE++++ V+ +E + + G+
Sbjct: 612 IEGITAEPEVGEIYEGKVVRIVDFGAFVEILP-GKDGLVHISEIADERVEKVEDVLKEGD 670
Query: 1508 KVKVKILKVDKEKRRISLGMK 1528
+VKVK+L++DK + RI L K
Sbjct: 671 EVKVKVLEIDK-RGRIRLSRK 690
|
Length = 693 |
| >gnl|CDD|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 5e-13
Identities = 109/570 (19%), Positives = 204/570 (35%), Gaps = 89/570 (15%)
Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
P VV G V +I + G V G+ G P S+ + D+ + VG V +
Sbjct: 17 EEFEPGDVVKGTVVSIEKDGVLVDIGGKSEGVIPISEFSNEPVEDVVQ---VGDEVEVLV 73
Query: 817 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
L V G + LS ++ A + LEE G
Sbjct: 74 LRVEDGEGELVLSRRK-------AERERAWEKLEEAFE-------------------NGE 107
Query: 877 VIEGKVHESNDFGVVVSFEEHSDVYGFI-----THHQLAGATVESGSVIQAAILDVAKAE 931
++EGK+ G+ V E V F+ + G ++ IL++ K
Sbjct: 108 IVEGKITGKVKGGLTVDIEG---VRAFLPGSLVDVRPVRDLDPLIGKELEFKILELDKKR 164
Query: 932 RLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLP 991
V LS + V + ++ +++ E L V + V +V+ + + + +
Sbjct: 165 NNVVLSRRAVL-----------EEERSEQREELLNKLEVGEVVEGVVKNITDYGAFVDIG 213
Query: 992 EYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSS 1051
+ + + +S P + G V V + GR+ L LK
Sbjct: 214 GVDGLLHISEISWKRV-DHPSEVVKVGDEV--KVKVISLDEERGRVSLSLKQ-----LEE 265
Query: 1052 SKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNF 1111
+ Y VG V+ ++T + ++ G G +H++E++ K NV +
Sbjct: 266 DPWEGIEKKYPVGDKVEGKVTNLTDYGAFVEIEEGVEGLVHVSEISWTKKNVPSEVV--- 322
Query: 1112 KIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV 1171
K+GQ V +++ + + S L +K + F + +G V G V
Sbjct: 323 KVGQEVEVKVL-DIDPERRRIS----LGLK-----QLKENPWEEFAD-KHPVGDVVEGKV 371
Query: 1172 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1231
+ + A + + + + S E ++ G V VL+++KEK+ +
Sbjct: 372 KSITDFGAFVELEGGIDG--LVHLSDLSWDRPGEEAEKYKKGDEVEAKVLAVDKEKERIS 429
Query: 1232 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1291
L GI + + + +G +V G++ + G V++G + G +
Sbjct: 430 L-------GIKQLEESPWEEFSEKYK-KGSVVKGKVKSVKDK--GAFVELGGGVEGLIRL 479
Query: 1292 TELKNICVSDPLSGYDEGQFVKCKVLEISR 1321
+EL D L G V+ V+ I +
Sbjct: 480 SEL----SRDVLK---VGDEVEAVVVSIDK 502
|
Length = 541 |
| >gnl|CDD|236126 PRK07899, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 5e-13
Identities = 118/411 (28%), Positives = 192/411 (46%), Gaps = 83/411 (20%)
Query: 1144 MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTI---------SRHLK 1188
+ V++IGS F D +I G V G V KVD + LL I SR L
Sbjct: 10 QVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELS 69
Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTV-- 1246
+ +P+E+ E +G V VL KE K RL+L S K
Sbjct: 70 -----IKHDVDPNEVVE------VGDEVEALVLQ--KEDKEGRLIL-------SKKRAQY 109
Query: 1247 -----DISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVS 1300
I I E D +V G + +++ G GL++ IG + E++ V
Sbjct: 110 ERAWGTIEK------IKEKDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRR--VR 159
Query: 1301 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHL 1359
D L Y GQ ++ K++E+ + R +V LS R+ L+ S S L+ L
Sbjct: 160 D-LQPY-IGQEIEAKIIELDKN-RN--NVVLSRRAWLEQTQSEVRSEFLNQ--------L 206
Query: 1360 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1419
+K + +G V ++ + G F+ L +D V +S LS +++ P + +G+ V
Sbjct: 207 QK------GQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVT 259
Query: 1420 GRVLSVEPLSKRVEVTLKTSDSRTASQSE-INNLSNLH-VGDIVIGQIKRVESYGLFITI 1477
VL V+ +RV ++LK A+Q + + H +G IV G++ ++ +G F+ +
Sbjct: 260 VEVLDVDMDRERVSLSLK------ATQEDPWQQFARTHAIGQIVPGKVTKLVPFGAFVRV 313
Query: 1478 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
E + GL H+SEL+E HV+ E + + G++V VK++ +D E+RRISL +K
Sbjct: 314 EE-GIEGLVHISELAERHVEVPEQVVQVGDEVFVKVIDIDLERRRISLSLK 363
|
Length = 486 |
| >gnl|CDD|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 9e-13
Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 12/163 (7%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF----EIVKPGKKFKVGAELVFR 552
G VV+GKV + FGA V GG+ L H+S+ + + + +K G E+
Sbjct: 372 PVGDVVEGKVKNITDFGAFVGLEGGIDGLV---HLSDISWDKKGEEAVELYKKGDEVEAV 428
Query: 553 VLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
VL V + +RI++ K+ + + + I G +T+++ G FV +GV+
Sbjct: 429 VLKVDVEKERISLGIKQLEEDPFEEFAKKHKKGS---IVTGTVTEVKDKGAFVELEDGVE 485
Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
G SEL D + + + VG V+ ++++ +RRI+LS
Sbjct: 486 GLIRASELSRDRVEDATEVLKVGDEVEAKVINIDRKNRRISLS 528
|
Length = 565 |
| >gnl|CDD|197648 smart00316, S1, Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 2e-12
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
+ G VV+G V + GA V GV+ L P+ +S+ + P + KVG E+ +VL V
Sbjct: 1 EVGDVVEGTVTEITPGGAFVDLGNGVEGLIPISELSDKRVKDPEEVLKVGDEVKVKVLSV 60
Query: 557 --KSKRITVTHK 566
+ RI ++ K
Sbjct: 61 DEEKGRIILSLK 72
|
Length = 72 |
| >gnl|CDD|224023 COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 5e-12
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
++ VG + G+I + YG F+ +E GL H+SE+++ V +I + G++VKVK
Sbjct: 1 MSMKVGSKLKGKITGITPYGAFVELEGGK-TGLVHISEIADGFVKDIHDHLKVGQEVKVK 59
Query: 1513 ILKVDKEKRRISLGMKS 1529
+L +D E +ISL ++
Sbjct: 60 VLDID-ENGKISLSIRK 75
|
Length = 129 |
| >gnl|CDD|233102 TIGR00717, rpsA, ribosomal protein S1 | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 6e-12
Identities = 76/366 (20%), Positives = 147/366 (40%), Gaps = 59/366 (16%)
Query: 315 SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD-IFHLQNTFPTTNWKND------Y 367
++ L G +V V++I + G + G VD + H+ + +WK
Sbjct: 181 LLENLKEGDVVKGVVKNITDFGAFVDL-----GGVDGLLHITDM----SWKRVKHPSEYV 231
Query: 368 NQHKKVNARILFVDPTSRAVGLTL-----NPYL-LHNRAPPSHV---KVGDIYDQSKVVR 418
++V +++ D + L+L +P+ + + P +V ++ D V
Sbjct: 232 KVGQEVKVKVIKFDKEKGRISLSLKQLGEDPWEAIEKKFPVGDKITGRVTNLTDYGVFVE 291
Query: 419 VDRGL-GLL----LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 473
++ G+ GL+ + V D E + ++ + + R+ LG +
Sbjct: 292 IEEGIEGLVHVSEMSWVKKNSHPSKVVKKGDEVEVMILDIDPERR-----RLS-LGLKQC 345
Query: 474 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 533
KA+ +E H G V GK+ + FGA V+ GG+ L H+S+
Sbjct: 346 --------KANPWEQFEEKH---PVGDRVTGKIKKITDFGAFVELEGGIDGLI---HLSD 391
Query: 534 FEIVKPGK----KFKVGAEL--VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL 587
K G+ +K G E+ V + + KRI++ K+ + Y +
Sbjct: 392 ISWDKDGREADHLYKKGDEIEAVVLAVDKEKKRISLGVKQLTENPWEKFAAKYKVGS--- 448
Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
+ G +T+I+ G FV GV+G SEL + + + VG V+ +++ +
Sbjct: 449 VVKGKVTEIKDFGAFVELPGGVEGLIRNSELSENRDEDKTDEIKVGDEVEAKVVDIDKKN 508
Query: 648 RRINLS 653
R+++LS
Sbjct: 509 RKVSLS 514
|
This model describes ribosomal protein S1, RpsA. This protein is found in most bacterial genomes in a single copy, but is not present in the Mycoplasmas. It is heterogeneous with respect to the number of repeats of the S1 RNA binding domain described by PFAM model pfam00575: six repeats in E. coli and most other bacteria, four in Bacillus subtilis and some other species. rpsA is an essential gene in E. coli but not in B. subtilis. It is associated with the cytidylate kinase gene cmk in many species, and fused to it in Treponema pallidum. RpsA is proposed (Medline:97323001) to assist in mRNA degradation. This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 516 |
| >gnl|CDD|181215 PRK08059, PRK08059, general stress protein 13; Validated | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 6e-12
Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1511
+S VG +V G++ ++ YG F+ ++ GL H+SE++ V +I G++VKV
Sbjct: 2 MSQYEVGSVVTGKVTGIQPYGAFVALDEETQ-GLVHISEITHGFVKDIHDFLSVGDEVKV 60
Query: 1512 KILKVDKEKRRISLGMK 1528
K+L VD+EK +ISL ++
Sbjct: 61 KVLSVDEEKGKISLSIR 77
|
Length = 123 |
| >gnl|CDD|240203 cd05698, S1_Rrp5_repeat_hs6_sc5, S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 1e-11
Identities = 21/66 (31%), Positives = 33/66 (50%)
Query: 766 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
HG + + GC V F + GF P+S+ + D + + VGQ V+ +L + E R
Sbjct: 5 HGTIVKVKPNGCIVSFYNNVKGFLPKSELSEAFIKDPEEHFRVGQVVKVKVLSCDPEQQR 64
Query: 826 ITLSLK 831
+ LS K
Sbjct: 65 LLLSCK 70
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 70 |
| >gnl|CDD|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 69.0 bits (170), Expect = 1e-11
Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 9/153 (5%)
Query: 439 YVTISDVA-EEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGI--LKASAFEGLVFTHS 494
V +SD++ +++ + + YK+G V +L E ++ GI L+ FE
Sbjct: 400 LVHLSDISWDKKGEEAVELYKKGDEVEAVVLKVDVEKERISLGIKQLEEDPFEEFA---K 456
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
K G +V G V V GA V+ GV+ L +S + + KVG E+ +V+
Sbjct: 457 KHKKGSIVTGTVTEVKDKGAFVELEDGVEGLIRASELSRDRVEDATEVLKVGDEVEAKVI 516
Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATD 585
+ K++RI+++ K + ++ Y A+D
Sbjct: 517 NIDRKNRRISLSIKALDEAEEKEAIAEYNSASD 549
|
Length = 565 |
| >gnl|CDD|238094 cd00164, S1_like, S1_like: Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-11
Identities = 26/66 (39%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 1461 VIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEK 1520
V G++ + +G+F+ +E + GL H+SELS+ V + +++ G++V+VK+L+VD EK
Sbjct: 1 VTGKVVSITKFGVFVELE-DGVEGLVHISELSDKFVKDPSEVFKVGDEVEVKVLEVDPEK 59
Query: 1521 RRISLG 1526
RISL
Sbjct: 60 GRISLS 65
|
Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold. Length = 65 |
| >gnl|CDD|238094 cd00164, S1_like, S1_like: Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-11
Identities = 22/65 (33%), Positives = 37/65 (56%)
Query: 1371 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1430
V G V ++T G F+ L ++ V +S LSD +V+ P + F +G V +VL V+P
Sbjct: 1 VTGKVVSITKFGVFVELEDGVEGLVHISELSDKFVKDPSEVFKVGDEVEVKVLEVDPEKG 60
Query: 1431 RVEVT 1435
R+ ++
Sbjct: 61 RISLS 65
|
Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold. Length = 65 |
| >gnl|CDD|240189 cd05684, S1_DHX8_helicase, S1_DHX8_helicase: The N-terminal S1 domain of human ATP-dependent RNA helicase DHX8, a DEAH (Asp-Glu-Ala-His) box polypeptide | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 2e-11
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 1458 GDIVIGQIKRVESYGLFITIENT--NLVGLCHVSELSEDH-VDNIETIYRAGEKVKVKIL 1514
G I G++ + +G F+ +E GL H+S+LS + V N + + G+KVKVK++
Sbjct: 1 GKIYKGKVTSIMDFGCFVQLEGLKGRKEGLVHISQLSFEGRVANPSDVVKRGQKVKVKVI 60
Query: 1515 KVDKEKRRISLGMK 1528
+ K ISL MK
Sbjct: 61 SIQNGK--ISLSMK 72
|
The DEAH-box RNA helicases are thought to play key roles in pre-mRNA splicing and DHX8 facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome. DHX8 is also known as HRH1 (human RNA helicase 1) in Homo sapiens and PRP22 in Saccharomyces cerevisiae. Length = 79 |
| >gnl|CDD|180960 PRK07400, PRK07400, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 3e-11
Identities = 27/77 (35%), Positives = 51/77 (66%), Gaps = 2/77 (2%)
Query: 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1511
++ L VG++V+G ++ ++ YG FI I + GL H+SE+S +H++ +++ +++KV
Sbjct: 191 MNRLEVGEVVVGTVRGIKPYGAFIDIGGVS--GLLHISEISHEHIETPHSVFNVNDEMKV 248
Query: 1512 KILKVDKEKRRISLGMK 1528
I+ +D E+ RISL K
Sbjct: 249 MIIDLDAERGRISLSTK 265
|
Length = 318 |
| >gnl|CDD|197648 smart00316, S1, Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 8e-11
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1426
+V+G V +T G F+ L ++ + +S LSD V+ PE+ +G V +VLSV+
Sbjct: 2 VGDVVEGTVTEITPGGAFVDLGNGVEGLIPISELSDKRVKDPEEVLKVGDEVKVKVLSVD 61
Query: 1427 PLSKRVEVTLK 1437
R+ ++LK
Sbjct: 62 EEKGRIILSLK 72
|
Length = 72 |
| >gnl|CDD|197648 smart00316, S1, Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 8e-11
Identities = 26/71 (36%), Positives = 33/71 (46%)
Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
VV G V I G FV + G P S+ D + D + VG V+ +L V+
Sbjct: 2 VGDVVEGTVTEITPGGAFVDLGNGVEGLIPISELSDKRVKDPEEVLKVGDEVKVKVLSVD 61
Query: 821 SETGRITLSLK 831
E GRI LSLK
Sbjct: 62 EEKGRIILSLK 72
|
Length = 72 |
| >gnl|CDD|237516 PRK13806, rpsA, 30S ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 9e-11
Identities = 62/270 (22%), Positives = 112/270 (41%), Gaps = 26/270 (9%)
Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLE 1318
EGD+V G ++++ G V++ P + G VH +EL V G V+ KVL
Sbjct: 202 EGDVVEGTVTRLAP--FGAFVELAPGVEGMVHISELSWSRVQKADEAVSVGDTVRVKVLG 259
Query: 1319 ISRTVRGT-FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1377
I R +G + LS++ + D V + L V G V
Sbjct: 260 IERAKKGKGLRISLSIKQA--------GGDPWDTVG---------DRLKAGDKVTGKVVR 302
Query: 1378 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
+ G F+ + ++ V +S +S V PE G VA ++ ++P +R+ ++L
Sbjct: 303 LAPFGAFVEILPGIEGLVHVSEMSWTRRVNKPEDVVAPGDAVAVKIKDIDPAKRRISLSL 362
Query: 1437 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1496
+ ++ + G V G +++ +GLF+ + + GL S +S
Sbjct: 363 RDAEGDPWADVA----ERFAPGTTVTGTVEKRAQFGLFVNLA-PGVTGLLPASVISRAGK 417
Query: 1497 DNIETIYRAGEKVKVKILKVDKEKRRISLG 1526
+ G+ V + + ++D KR+ISL
Sbjct: 418 PATYEKLKPGDSVTLVVEEIDTAKRKISLA 447
|
Length = 491 |
| >gnl|CDD|239917 cd04471, S1_RNase_R, S1_RNase_R: RNase R C-terminal S1 domain | Back alignment and domain information |
|---|
Score = 59.3 bits (145), Expect = 9e-11
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 11/80 (13%)
Query: 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE-----------TIYRA 1505
VG+ G I V S+GLF+ ++N + GL HVS L +D+ + E ++R
Sbjct: 1 VGEEFDGVISGVTSFGLFVELDNLTVEGLVHVSTLGDDYYEFDEENHALVGERTGKVFRL 60
Query: 1506 GEKVKVKILKVDKEKRRISL 1525
G+KVKV++++VD ++R+I
Sbjct: 61 GDKVKVRVVRVDLDRRKIDF 80
|
RNase R is a processive 3' to 5' exoribonuclease, which is a homolog of RNase II. RNase R degrades RNA with secondary structure having a 3' overhang of at least 7 nucleotides. RNase R and PNPase play an important role in the degradation of RNA with extensive secondary structure, such as rRNA, tRNA, and certain mRNA which contains repetitive extragenic palindromic sequences. The C-terminal S1 domain binds ssRNA. Length = 83 |
| >gnl|CDD|234623 PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 2e-10
Identities = 80/361 (22%), Positives = 140/361 (38%), Gaps = 49/361 (13%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
++ G +VKG V++V+ V + + PL ++ EI + KVG E+ +VL
Sbjct: 299 QIRRGDIVKGTVVSVNENEVFVDVGYKSEGVIPLRELTLDEISSLKESVKVGDEIEVKVL 358
Query: 555 GVKSKRITVTHKKTLVKSKLA---ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
++ + V K + A + ++ G + ++ K G V Y GV+
Sbjct: 359 KLEDEDGYVVLSKKEADREKAWKELEEAFENGE---PVKGKVKEVVKGGLLVD-YGGVRA 414
Query: 612 FAPRSELGLDPGCEPSSMYHV-------GQVVKCRIMS-------SIPASRRINLSFMMK 657
F P S + +V GQ ++ +I+ + SR+ L +
Sbjct: 415 FLPASH---------VELGYVEDLSEYKGQELEVKIIEFNRKRRKKVVLSRKAILEEEKE 465
Query: 658 PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKS 716
+ + ++ G +V G V +T V + G G + ++ +E
Sbjct: 466 KKKEETWNSLEEGDVVEGEVKRLTDFGAFVDI---GGVDGLLHVSEISWGRVEKP---SD 519
Query: 717 VIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD----ASHIHPNSVVHGYVCN 771
V+K G E +L +D E+ L LS K + LP S+V G V
Sbjct: 520 VLKVGDEIKVYILDIDKENKKLSLSLK-------KLLPDPWENVEEKYPVGSIVLGKVVR 572
Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
I G FV + G S+ + G+ V++ IL+V+ E RI LS+K
Sbjct: 573 IAPFGAFVELEPGVDGLVHISQISWKRIDKPEDVLSEGEEVKAKILEVDPEEKRIRLSIK 632
Query: 832 Q 832
+
Sbjct: 633 E 633
|
Length = 647 |
| >gnl|CDD|197648 smart00316, S1, Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 2e-10
Identities = 24/67 (35%), Positives = 33/67 (49%)
Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
+ G +T+I G FV NGV+G P SEL +P + VG VK +++S
Sbjct: 5 VVEGTVTEITPGGAFVDLGNGVEGLIPISELSDKRVKDPEEVLKVGDEVKVKVLSVDEEK 64
Query: 648 RRINLSF 654
RI LS
Sbjct: 65 GRIILSL 71
|
Length = 72 |
| >gnl|CDD|239908 cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 3e-10
Identities = 21/79 (26%), Positives = 41/79 (51%)
Query: 576 ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 635
+ +++++ ++ HG++ I +G FV F G+ G AP+S + + +PS + GQ
Sbjct: 5 LPTNFSDLKPGMVVHGYVRNITPYGVFVEFLGGLTGLAPKSYISDEFVTDPSFGFKKGQS 64
Query: 636 VKCRIMSSIPASRRINLSF 654
V ++ S +R LS
Sbjct: 65 VTAKVTSVDEEKQRFLLSL 83
|
Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 83 |
| >gnl|CDD|224018 COG1093, SUI2, Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 4e-10
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 1457 VGDIVIGQIKRVESYGLFITI-ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1515
G+IV+G +K+V YG ++ + E G H+SE++ V NI + G+KV K+L+
Sbjct: 11 EGEIVVGTVKQVADYGAYVELDEYPGKEGFIHISEVASGWVKNIRDYVKEGQKVVAKVLR 70
Query: 1516 VDKEKRRISLGMK 1528
VD ++ I L +K
Sbjct: 71 VDPKRGHIDLSLK 83
|
Length = 269 |
| >gnl|CDD|239899 cd04452, S1_IF2_alpha, S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 4e-10
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 1457 VGDIVIGQIKRVESYGLFITI-ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1515
G++V+ +K + G ++++ E N+ G+ +SELS + +I + + G K VK+++
Sbjct: 3 EGELVVVTVKSIADMGAYVSLLEYGNIEGMILLSELSRRRIRSIRKLVKVGRKEVVKVIR 62
Query: 1516 VDKEKRRISLGMK 1528
VDKEK I L K
Sbjct: 63 VDKEKGYIDLSKK 75
|
S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Eukaryotic and archaeal Initiation Factor 2 (e- and aIF2, respectively) are heterotrimeric proteins with three subunits (alpha, beta, and gamma). IF2 plays a crucial role in the process of translation initiation. The IF2 gamma subunit contains a GTP-binding site. The IF2 beta and gamma subunits together are thought to be responsible for binding methionyl-initiator tRNA. The ternary complex consisting of IF2, GTP, and the methionyl-initiator tRNA binds to the small subunit of the ribosome, as part of a pre-initiation complex that scans the mRNA to find the AUG start codon. The IF2-bound GTP is hydrolyzed to GDP when the methionyl-initiator tRNA binds the AUG start codon, at which time the IF2 is released with its bound GDP. The large ribosomal subunit then joins with the small subunit to complete the initiation complex, which is competent to begin translation. The IF2a subunit is a major site of control of the translation initiation process, via phosphorylation of a specific serine residue. This alpha subunit is well conserved in eukaryotes and archaea but is not present in bacteria. IF2 is a cold-shock-inducible protein. Length = 76 |
| >gnl|CDD|235188 PRK03987, PRK03987, translation initiation factor IF-2 subunit alpha; Validated | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 4e-10
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 17/116 (14%)
Query: 1457 VGDIVIGQIKRVESYGLFITI-ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1515
G++V+G +K V+ +G F+T+ E G H+SE++ V NI + G+KV K+++
Sbjct: 8 EGELVVGTVKEVKDFGAFVTLDEYPGKEGFIHISEVASGWVKNIRDHVKEGQKVVCKVIR 67
Query: 1516 VDKEKRRISLGMKS----------SYFKND--ADN-LQMSSEE---ESDEAIEEVG 1555
VD K I L +K +KN+ AD L++++E+ +EA EEVG
Sbjct: 68 VDPRKGHIDLSLKRVNEHQRREKIQEWKNEQKADKWLELAAEKLGKSLEEAWEEVG 123
|
Length = 262 |
| >gnl|CDD|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 5e-10
Identities = 107/481 (22%), Positives = 179/481 (37%), Gaps = 82/481 (17%)
Query: 135 MKLWGVVAEVNEKDLVI------CLPGGLRGLARAADALDPI--LDNEIEANEDNLLPTI 186
+ W + E E ++ + GGL A P +D + D L
Sbjct: 93 ERAWEKLEEAFENGEIVEGKITGKVKGGLTVDIEGVRAFLPGSLVDVRPVRDLDPL---- 148
Query: 187 FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSL-----LYKGLSLETVQEGMVLTAYVK 241
+G+ + +L+LD + + LS R L + L ++ G V+ VK
Sbjct: 149 --IGKELEFKILELDKKR-----NNVVLSRRAVLEEERSEQREELLNKLEVGEVVEGVVK 201
Query: 242 SIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVVRSIDRTRKVVYL 296
+I D+G + G G L + ++ +D VK G ++ V S+D R V L
Sbjct: 202 NITDYGAFVDIG--GVDGLLHISEISWK-RVDHPSEVVKVGDEVKVKVISLDEERGRVSL 258
Query: 297 S---SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
S + D K G V +V ++ + G + G V +
Sbjct: 259 SLKQLEEDPWEGIEKKYP---------VGDKVEGKVTNLTDYGAFVEIEEGVEGLVHV-- 307
Query: 354 LQNTFPTTNWKNDYNQHK------KVNARILFVDPTSRAVGLTL-----NPYLLHNRAPP 402
+W + +V ++L +DP R + L L NP
Sbjct: 308 -----SEISWTKKNVPSEVVKVGQEVEVKVLDIDPERRRISLGLKQLKENP----WEEFA 358
Query: 403 SHVKVGDIYDQSKVVRV-DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGS 461
VGD+ + KV + D G + L+ V +SD++ + + +KYK+G
Sbjct: 359 DKHPVGDVV-EGKVKSITDFGAFVELEGGID-----GLVHLSDLSWDRPGEEAEKYKKGD 412
Query: 462 CVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG 521
V ++L + + +K K G VVKGKV +V GA V+ GG
Sbjct: 413 EVEAKVLAVDKEKERISLGIKQLEESPWEEFSEKYKKGSVVKGKVKSVKDKGAFVELGGG 472
Query: 522 VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSS 579
V+ L L +S KVG E+ V+ + K+++I ++ K K + L S
Sbjct: 473 VEGLIRLSELSR-------DVLKVGDEVEAVVVSIDKKNRKILLSIKALERKEEKEALES 525
Query: 580 Y 580
Y
Sbjct: 526 Y 526
|
Length = 541 |
| >gnl|CDD|233102 TIGR00717, rpsA, ribosomal protein S1 | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 6e-10
Identities = 88/406 (21%), Positives = 154/406 (37%), Gaps = 69/406 (16%)
Query: 730 LDNESSNLLLSAKYSL-INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
LD + +N+++S + L +Q ++ VV G V NI + G FV LG + G
Sbjct: 155 LDQKRNNIVVSRRAYLEEERSQAREELLENLKEGDVVKGVVKNITDFGAFVD-LGGVDGL 213
Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFL 848
+ + S+ VGQ V+ ++ + E GRI+LSLKQ
Sbjct: 214 LHITDMSWKRVKHPSEYVKVGQEVKVKVIKFDKEKGRISLSLKQL--------------- 258
Query: 849 LEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQ 908
+ E + F +G I G+V D+GV V EE + G + +
Sbjct: 259 -----------GEDPWE-AIEKKFPVGDKITGRVTNLTDYGVFVEIEE--GIEGLVHVSE 304
Query: 909 LA--------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQ-AQKKK 959
++ V+ G ++ ILD+ R + L LK + + + +
Sbjct: 305 MSWVKKNSHPSKVVKKGDEVEVMILDIDPERRRLSLGLKQCKANPWEQFEEKHPVGDRVT 364
Query: 960 RKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD--YNTQKFPQKQFLN 1017
K + D G A VE+ G +SD ++
Sbjct: 365 GKIKKITDFG------AFVEL------------EGGIDGLIHLSDISWDKDGREADHLYK 406
Query: 1018 GQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPL 1077
I + L R+ L +K ++E K + Y VGS+V+ ++TEIK
Sbjct: 407 KGDEIE-AVVLAVDKEKKRISLGVKQLTENPWE-----KFAAKYKVGSVVKGKVTEIKDF 460
Query: 1078 ELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
++ G G I +E+++++ E+ K+G V A+++
Sbjct: 461 GAFVELPGGVEGLIRNSELSENR---DEDKTDEIKVGDEVEAKVVD 503
|
This model describes ribosomal protein S1, RpsA. This protein is found in most bacterial genomes in a single copy, but is not present in the Mycoplasmas. It is heterogeneous with respect to the number of repeats of the S1 RNA binding domain described by PFAM model pfam00575: six repeats in E. coli and most other bacteria, four in Bacillus subtilis and some other species. rpsA is an essential gene in E. coli but not in B. subtilis. It is associated with the cytidylate kinase gene cmk in many species, and fused to it in Treponema pallidum. RpsA is proposed (Medline:97323001) to assist in mRNA degradation. This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 516 |
| >gnl|CDD|240195 cd05690, S1_RPS1_repeat_ec5, S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 6e-10
Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKV 1516
G +V G+IK + +G+F+ ++ + GL H+S++S V + IY+ G++V+ +L +
Sbjct: 1 GTVVSGKIKSITDFGIFVGLDG-GIDGLVHISDISWTQRVRHPSEIYKKGQEVEAVVLNI 59
Query: 1517 DKEKRRISLG 1526
D E+ RISLG
Sbjct: 60 DVERERISLG 69
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 5 (ec5) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. Length = 69 |
| >gnl|CDD|224106 COG1185, Pnp, Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 6e-10
Identities = 23/72 (31%), Positives = 48/72 (66%), Gaps = 2/72 (2%)
Query: 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1516
VG++ G + R+ +G F+ + GL H+S+L+++ V+ +E + + G++VKVK++++
Sbjct: 619 VGEVYEGTVVRIVDFGAFVELLP-GKDGLVHISQLAKERVEKVEDVLKEGDEVKVKVIEI 677
Query: 1517 DKEKRRISLGMK 1528
D ++ RI L +K
Sbjct: 678 D-KQGRIRLSIK 688
|
Length = 692 |
| >gnl|CDD|240202 cd05697, S1_Rrp5_repeat_hs5, S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 7e-10
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
G VVKG + + G V+ +K L P H+++ + P KKFK G ++ RVL V+
Sbjct: 1 GQVVKGTIRKLRPSGIFVKLSDHIKGLVPPMHLADVRLKHPEKKFKPGLKVKCRVLSVEP 60
Query: 559 --KRITVTH 565
KR+ +T
Sbjct: 61 ERKRLVLTL 69
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 5 (hs5) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 69 |
| >gnl|CDD|105491 PRK12269, PRK12269, bifunctional cytidylate kinase/ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (155), Expect = 8e-10
Identities = 81/349 (23%), Positives = 145/349 (41%), Gaps = 39/349 (11%)
Query: 502 VKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV--LGVKSK 559
V G V + SFGA + GG L + MS + +P + K G + +V L K
Sbjct: 497 VSGVVKSFTSFGAFIDL-GGFDGLLHVNDMSWGHVARPREFVKKGQTIELKVIRLDQAEK 555
Query: 560 RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 619
RI ++ K L + + D + G +TKI G F+ G++G A SE
Sbjct: 556 RINLSLKHFQPDPWLEFENKFG-VND--VVKGRVTKIADFGAFIELAEGIEGLAHISEFS 612
Query: 620 -LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSG 675
+ +PS M +G V+C I+ + R++L E+ +
Sbjct: 613 WVKKTSKPSDMVKIGDEVECMILGYDIQAGRVSLGLKQVTANPWEEIEARYPVGARFTRR 672
Query: 676 VVDVVTPNAVV---------VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
+V V A + ++V + K T P +H ++ G E +
Sbjct: 673 IVKVTNAGAFIEMEEGIDGFLHVDDLSWVKRTRPADH-------------ELEVGKEIEC 719
Query: 727 LLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 785
+++ D ++ + L K L ++ Q+ ++A + S V G V ++ + G FVR G +
Sbjct: 720 MVIECDPQARRIRLGVK-QLSDNPWQVFANAYGV--GSTVEGEVSSVTDFGIFVRVPGGV 776
Query: 786 TGFAPRSKAV---DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
G + V DG + + Y VG V++ I+D+N + ++ S++
Sbjct: 777 EGLVRKQHLVENRDGDPGEALRKYAVGDRVKAVIVDMNVKDRKVAFSVR 825
|
Length = 863 |
| >gnl|CDD|105491 PRK12269, PRK12269, bifunctional cytidylate kinase/ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (154), Expect = 1e-09
Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 25/220 (11%)
Query: 501 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV----KPGKKFKVGAELVFRVLG- 555
VVKG+V + FGA ++ G++ L H+SEF V KP K+G E+ +LG
Sbjct: 581 VVKGRVTKIADFGAFIELAEGIEGLA---HISEFSWVKKTSKPSDMVKIGDEVECMILGY 637
Query: 556 -VKSKRITVTHKKTLVKSKLAILSSY---AEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
+++ R+++ K+ I + Y A T R++ K+ G F+ G+ G
Sbjct: 638 DIQAGRVSLGLKQVTANPWEEIEARYPVGARFTRRIV------KVTNAGAFIEMEEGIDG 691
Query: 612 FAPRSELGLDPGCEPSSM-YHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLV 667
F +L P+ VG+ ++C ++ P +RRI L P +V +
Sbjct: 692 FLHVDDLSWVKRTRPADHELEVGKEIECMVIECDPQARRIRLGVKQLSDNPWQVFA-NAY 750
Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 707
+GS V G V VT + V V G +G + +HL ++
Sbjct: 751 GVGSTVEGEVSSVTDFGIFVRV--PGGVEGLVRKQHLVEN 788
|
Length = 863 |
| >gnl|CDD|239908 cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-09
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1510
N S+L G +V G ++ + YG+F+ L GL S +S++ V + ++ G+ V
Sbjct: 8 NFSDLKPGMVVHGYVRNITPYGVFVEFLG-GLTGLAPKSYISDEFVTDPSFGFKKGQSVT 66
Query: 1511 VKILKVDKEKRRISLGM 1527
K+ VD+EK+R L +
Sbjct: 67 AKVTSVDEEKQRFLLSL 83
|
Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 83 |
| >gnl|CDD|225094 COG2183, Tex, Transcriptional accessory protein [Transcription] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-09
Identities = 26/80 (32%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 1449 INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEK 1508
+ ++++L G I+ G ++ V +G F+ I + GL H+S+LS+ V + + + G+
Sbjct: 650 VESITDLKPGMILEGTVRNVVDFGAFVDI-GVHQDGLVHISQLSDKFVKDPNEVVKVGDI 708
Query: 1509 VKVKILKVDKEKRRISLGMK 1528
VKVK+++VD ++RI+L M+
Sbjct: 709 VKVKVIEVDTARKRIALSMR 728
|
Length = 780 |
| >gnl|CDD|240202 cd05697, S1_Rrp5_repeat_hs5, S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 3e-09
Identities = 26/68 (38%), Positives = 40/68 (58%)
Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
+V+G ++ + G F+ LS + V +L+D ++ PEK+F G V RVLSVEP
Sbjct: 2 QVVKGTIRKLRPSGIFVKLSDHIKGLVPPMHLADVRLKHPEKKFKPGLKVKCRVLSVEPE 61
Query: 1429 SKRVEVTL 1436
KR+ +TL
Sbjct: 62 RKRLVLTL 69
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 5 (hs5) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 69 |
| >gnl|CDD|240190 cd05685, S1_Tex, S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 3e-09
Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 1458 GDIVIGQIKRVESYGLFITI--ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1515
G ++ G + V +G F+ I + GL H+S++++ V + + G+ V+VK++
Sbjct: 1 GMVLEGVVTNVTDFGAFVDIGVKQD---GLIHISKMADRFVSHPSDVVSVGDIVEVKVIS 57
Query: 1516 VDKEKRRISL 1525
+D+E+ RISL
Sbjct: 58 IDEERGRISL 67
|
The tex gene is essential in Bortella pertusis and is named for its role in toxin expression. Tex has two functional domains, an N-terminal domain homologous to the Escherichia coli maltose repression protein, which is a poorly defined transcriptional factor, and a C-terminal S1 RNA-binding domain. Tex is found in prokaryotes, eukaryotes, and archaea. Length = 68 |
| >gnl|CDD|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 61.3 bits (150), Expect = 4e-09
Identities = 112/497 (22%), Positives = 185/497 (37%), Gaps = 121/497 (24%)
Query: 501 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFK--VGAELVFRVLGVKS 558
+V+G + G V GV+A P + V+P + G EL F+V+ +
Sbjct: 117 IVEGVINGKVKGGFTVDL-NGVEAFLPGSQVD----VRPVRDTDPLEGKELEFKVIKLDK 171
Query: 559 KR--ITVTHKKTLVKSKLA----ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
KR I V+ + L + + +L + E + G + I +G FV GV G
Sbjct: 172 KRNNIVVSRRAVLEEERAEEREELLENLEEGQ---VVEGVVKNITDYGAFVDLG-GVDGL 227
Query: 613 APRSEL---GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS-----ED 664
+++ ++ PS + +VG VK +++ +R++L +K E
Sbjct: 228 LHITDISWKRVNH---PSEVVNVGDEVKVKVLKFDKEKKRVSLG--LKQLGEDPWEAIEK 282
Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE---HATVM------- 714
+GS V G V +T V L + +E H + M
Sbjct: 283 KY-PVGSKVKGKVTNITDYGAFV---------------ELEEGIEGLVHVSEMSWTKKNK 326
Query: 715 --KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVC 770
V+ G E + +L +D E + L K N ++ +P VV G V
Sbjct: 327 HPSKVVSVGQEVEVMVLEIDEEKRRISLGLKQCKENPWEEFAEK----YPVGDVVEGKVK 382
Query: 771 NIIETGCFVRFLGRLTGFAPRSKAVDG-----------QRADLSKTYYVGQSVRSNILDV 819
NI + G FV G +DG + + + Y G V + +L V
Sbjct: 383 NITDFGAFVGLEG----------GIDGLVHLSDISWDKKGEEAVELYKKGDEVEAVVLKV 432
Query: 820 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 879
+ E RI+L +KQ LEE + KH GS++
Sbjct: 433 DVEKERISLGIKQ----------------LEEDPFEEFAKKHK-----------KGSIVT 465
Query: 880 GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAER 932
G V E D G V E+ V G I +L+ VE G ++A ++++ + R
Sbjct: 466 GTVTEVKDKGAFVELED--GVEGLIRASELSRDRVEDATEVLKVGDEVEAKVINIDRKNR 523
Query: 933 LVDLSLKTVFIDRFREA 949
+ LS+K + +EA
Sbjct: 524 RISLSIKALDEAEEKEA 540
|
Length = 565 |
| >gnl|CDD|240213 cd05708, S1_Rrp5_repeat_sc12, S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 5e-09
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 760 HPNSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
+ G V + + G F+ G ++G +S+ D + AD SK + VG VR+ +L
Sbjct: 1 KVGQKIDGTVRRVEDYGVFIDIDGTNVSGLCHKSEISDNRVADASKLFRVGDKVRAKVLK 60
Query: 819 VNSETGRITLSLKQS 833
+++E RI+L LK S
Sbjct: 61 IDAEKKRISLGLKAS 75
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 12 (sc12). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 77 |
| >gnl|CDD|233703 TIGR02063, RNase_R, ribonuclease R | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 6e-09
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 11/79 (13%)
Query: 1456 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET-----------IYR 1504
+G+ G I V S+GLF+ +EN + GL H+S L +D+ E ++R
Sbjct: 626 KIGEEFEGVISGVTSFGLFVELENNTIEGLVHISTLKDDYYVFDEKGLALVGERTGKVFR 685
Query: 1505 AGEKVKVKILKVDKEKRRI 1523
G++VKV+++K D + +I
Sbjct: 686 LGDRVKVRVVKADLDTGKI 704
|
This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans [Transcription, Degradation of RNA]. Length = 709 |
| >gnl|CDD|234271 TIGR03591, polynuc_phos, polyribonucleotide nucleotidyltransferase | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 7e-09
Identities = 29/96 (30%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 1431 RVEVTLKTSDSRTASQSEINNL-SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1489
V++ ++ A+ I + + VG I G++ R+ +G F+ I GL H+S
Sbjct: 591 TVKIAASDGEAAEAAIKMIEGITAEPEVGKIYEGKVVRIMDFGAFVEILP-GKDGLVHIS 649
Query: 1490 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1525
E++ + V+ +E + + G++VKVK+L++DK + RI L
Sbjct: 650 EIANERVEKVEDVLKEGDEVKVKVLEIDK-QGRIKL 684
|
Members of this protein family are polyribonucleotide nucleotidyltransferase, also called polynucleotide phosphorylase. Some members have been shown also to have additional functions as guanosine pentaphosphate synthetase and as poly(A) polymerase (see model TIGR02696 for an exception clade, within this family) [Transcription, Degradation of RNA]. Length = 684 |
| >gnl|CDD|216000 pfam00575, S1, S1 RNA binding domain | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 9e-09
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
+ G VVKG V V GA V GV+ P+ +S+ + P + KVG E+ +VL
Sbjct: 1 KPEEGDVVKGTVTRVTKGGAFVDLGNGVEGFIPISEISDDRVEDPDEVLKVGDEVEVKVL 60
Query: 555 GV--KSKRITVTHK 566
V + RI ++ +
Sbjct: 61 KVDKERGRIILSIR 74
|
The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure. Length = 74 |
| >gnl|CDD|105491 PRK12269, PRK12269, bifunctional cytidylate kinase/ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (146), Expect = 9e-09
Identities = 45/159 (28%), Positives = 81/159 (50%), Gaps = 7/159 (4%)
Query: 1371 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1430
V G VK+ TS G FI L D + ++++S G+V P + G+ + +V+ ++ K
Sbjct: 497 VSGVVKSFTSFGAFIDLG-GFDGLLHVNDMSWGHVARPREFVKKGQTIELKVIRLDQAEK 555
Query: 1431 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
R+ ++LK + E + V D+V G++ ++ +G FI + + GL H+SE
Sbjct: 556 RINLSLKHFQPDPWLEFE----NKFGVNDVVKGRVTKIADFGAFIELAE-GIEGLAHISE 610
Query: 1491 LS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
S + + G++V+ IL D + R+SLG+K
Sbjct: 611 FSWVKKTSKPSDMVKIGDEVECMILGYDIQAGRVSLGLK 649
|
Length = 863 |
| >gnl|CDD|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 1e-08
Identities = 64/260 (24%), Positives = 104/260 (40%), Gaps = 28/260 (10%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE----IVKPGKKFKVGAELVFR 552
G VKGKV + +GA V+ G++ L H+SE P K VG E+
Sbjct: 285 PVGSKVKGKVTNITDYGAFVELEEGIEGLV---HVSEMSWTKKNKHPSKVVSVGQEVEVM 341
Query: 553 VLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
VL + + +RI++ K+ Y + G + I G FV G+
Sbjct: 342 VLEIDEEKRRISLGLKQCKENPWEEFAEKYPVGD---VVEGKVKNITDFGAFVGLEGGID 398
Query: 611 GFAPRSELGLD-PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED----- 664
G S++ D G E +Y G V+ ++ RI+L +K ++ ED
Sbjct: 399 GLVHLSDISWDKKGEEAVELYKKGDEVEAVVLKVDVEKERISLG--IK--QLEEDPFEEF 454
Query: 665 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723
K GS+V+G V V V + +G I L+ + V+K G E
Sbjct: 455 AKKHKKGSIVTGTVTEVKDKGAFVELEDG--VEGLIRASELSR--DRVEDATEVLKVGDE 510
Query: 724 FDQLLV-LDNESSNLLLSAK 742
+ ++ +D ++ + LS K
Sbjct: 511 VEAKVINIDRKNRRISLSIK 530
|
Length = 565 |
| >gnl|CDD|237516 PRK13806, rpsA, 30S ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-08
Identities = 35/129 (27%), Positives = 65/129 (50%), Gaps = 7/129 (5%)
Query: 1404 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1463
YVE PE + +G+ + VE + + V+ + R ++ + + GD+V G
Sbjct: 151 YVEDPE-SY-VGQTFQFLITRVEENGRNIVVSRRALLEREQKEALEAFMETVKEGDVVEG 208
Query: 1464 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR-- 1521
+ R+ +G F+ + + G+ H+SELS V + G+ V+VK+L +++ K+
Sbjct: 209 TVTRLAPFGAFVELA-PGVEGMVHISELSWSRVQKADEAVSVGDTVRVKVLGIERAKKGK 267
Query: 1522 --RISLGMK 1528
RISL +K
Sbjct: 268 GLRISLSIK 276
|
Length = 491 |
| >gnl|CDD|235614 PRK05807, PRK05807, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 2e-08
Identities = 24/74 (32%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
L G I+ G + + ++G F+ +E GL H+SE+++ +V +I + +KVKVK++
Sbjct: 3 LKAGSILEGTVVNITNFGAFVEVEGKT--GLVHISEVADTYVKDIREHLKEQDKVKVKVI 60
Query: 1515 KVDKEKRRISLGMK 1528
+D + +ISL +K
Sbjct: 61 SID-DNGKISLSIK 73
|
Length = 136 |
| >gnl|CDD|240203 cd05698, S1_Rrp5_repeat_hs6_sc5, S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 3e-08
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
G G I +V+ G ++ N N+ G SELSE + + E +R G+ VKVK+L D
Sbjct: 1 GLKTHGTIVKVKPNGCIVSFYN-NVKGFLPKSELSEAFIKDPEEHFRVGQVVKVKVLSCD 59
Query: 1518 KEKRRISLGMK 1528
E++R+ L K
Sbjct: 60 PEQQRLLLSCK 70
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 70 |
| >gnl|CDD|235851 PRK06676, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 3e-08
Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 6/159 (3%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
K G VV+G V + FGA V GGV L + +S + KP + VG E+ +VL +
Sbjct: 191 KEGDVVEGTVARLTDFGAFVDI-GGVDGLVHISELSHERVEKPSEVVSVGQEVEVKVLSI 249
Query: 557 --KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
+++RI+++ K TL + E + G + ++ G FV GV+G
Sbjct: 250 DWETERISLSLKDTLPGPWEGVEEKLPEGD---VIEGTVKRLTDFGAFVEVLPGVEGLVH 306
Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
S++ PS + GQ VK +++ +RI+LS
Sbjct: 307 ISQISHKHIATPSEVLEEGQEVKVKVLEVNEEEKRISLS 345
|
Length = 390 |
| >gnl|CDD|240196 cd05691, S1_RPS1_repeat_ec6, S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 3e-08
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
G IV G++ V++ G + + + + G +ELS D V++ ++ G++V+ KI VD
Sbjct: 1 GSIVTGKVTEVDAKGATVKLGD-GVEGFLRAAELSRDRVEDATERFKVGDEVEAKITNVD 59
Query: 1518 KEKRRISLGMKS 1529
++ R+ISL +K+
Sbjct: 60 RKNRKISLSIKA 71
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 6 (ec6) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. Length = 73 |
| >gnl|CDD|238094 cd00164, S1_like, S1_like: Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 4e-08
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 502 VKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRI 561
V GKV+++ FG V+ GV+ L + +S+ + P + FKVG E+ +VL V ++
Sbjct: 1 VTGKVVSITKFGVFVELEDGVEGLVHISELSDKFVKDPSEVFKVGDEVEVKVLEVDPEKG 60
Query: 562 TV 563
+
Sbjct: 61 RI 62
|
Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold. Length = 65 |
| >gnl|CDD|225094 COG2183, Tex, Transcriptional accessory protein [Transcription] | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 6e-08
Identities = 28/88 (31%), Positives = 48/88 (54%)
Query: 1360 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1419
E I DL P MI++G V+NV G F+ + D V +S LSD +V+ P + +G +V
Sbjct: 651 ESITDLKPGMILEGTVRNVVDFGAFVDIGVHQDGLVHISQLSDKFVKDPNEVVKVGDIVK 710
Query: 1420 GRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
+V+ V+ KR+ ++++ + S
Sbjct: 711 VKVIEVDTARKRIALSMRLDEEEGKLNS 738
|
Length = 780 |
| >gnl|CDD|239918 cd04472, S1_PNPase, S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 8e-08
Identities = 26/72 (36%), Positives = 47/72 (65%), Gaps = 10/72 (13%)
Query: 1458 GDIVIGQIKRVESYGLFITI----ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
G I G++ +++ +G F+ I + GL H+SELS++ V+ +E + + G++VKVK+
Sbjct: 1 GKIYEGKVVKIKDFGAFVEILPGKD-----GLVHISELSDERVEKVEDVLKVGDEVKVKV 55
Query: 1514 LKVDKEKRRISL 1525
++VD + RISL
Sbjct: 56 IEVDD-RGRISL 66
|
PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA. This family is classified based on the S1 domain. PNPase nonspecifically removes the 3' nucleotides from mRNA, but is stalled by double-stranded RNA structures such as a stem-loop. Evidence shows that a minimum of 7-10 unpaired nucleotides at the 3' end, is required for PNPase degradation. It is suggested that PNPase also dephosphorylates the RNA 5' end. This additional activity may regulate the 5'-dependent activity of RNaseE in vivo. Length = 68 |
| >gnl|CDD|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 9e-08
Identities = 103/587 (17%), Positives = 212/587 (36%), Gaps = 97/587 (16%)
Query: 663 EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
D+ + G +V G V + + V+V + K S+G IP ++ + V++ G
Sbjct: 15 SDEEFEPGDVVKGTVVSIEKDGVLVDIGGK--SEGVIPISEFSNEPV-----EDVVQVGD 67
Query: 723 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
E + +L +++ L+LS + + +V G + ++ G V
Sbjct: 68 EVEVLVLRVEDGEGELVLSRR--KAERERAWEKLEEAFENGEIVEGKITGKVKGGLTVDI 125
Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
G + F P S VD + +G+ + IL+++ + + LS + + +
Sbjct: 126 EG-VRAFLPGSL-VDVRPVR-DLDPLIGKELEFKILELDKKRNNVVLSRR----AVLEEE 178
Query: 842 FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
++ L K+ +G V+EG V D+G V V
Sbjct: 179 RSEQREELLNKLE-------------------VGEVVEGVVKNITDYGAFVDIGG---VD 216
Query: 902 GFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQ 954
G + +++ V+ G ++ ++ + + V LSLK + D +
Sbjct: 217 GLLHISEISWKRVDHPSEVVKVGDEVKVKVISLDEERGRVSLSLKQLEEDPWEGI----- 271
Query: 955 AQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQKF--P 1011
K V V V + + + + G VS+ + K P
Sbjct: 272 ----------EKKYPVGDKVEGKVTNLTDYGAFVEIEEGVE---GLVHVSEISWTKKNVP 318
Query: 1012 QKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEI 1071
+ GQ V V L R+ L LK + E + + VG +V+ ++
Sbjct: 319 SEVVKVGQEVE--VKVLDIDPERRRISLGLKQLKENPWE-----EFADKHPVGDVVEGKV 371
Query: 1072 TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK 1131
I ++ G G +H+++++ D+ +K G V A+++A + +
Sbjct: 372 KSITDFGAFVELEGGIDGLVHLSDLSWDRPGEEA---EKYKKGDEVEAKVLAVDKEKERI 428
Query: 1132 KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQL 1191
+ +L P E K G V G V V ++ A + + ++ +
Sbjct: 429 SLGIKQLEESP----WEEFSEKY-------KKGSVVKGKVKSVKDKGAFVELGGGVEGLI 477
Query: 1192 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1238
+ + + + +G V V+SI+K+ + + L ++ +
Sbjct: 478 RLSELSRD---------VLKVGDEVEAVVVSIDKKNRKILLSIKALE 515
|
Length = 541 |
| >gnl|CDD|239908 cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 1e-07
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
SD+KPGMVV G V + +G V+F GG+ L P ++S+ + P FK G + +V
Sbjct: 10 SDLKPGMVVHGYVRNITPYGVFVEFLGGLTGLAPKSYISDEFVTDPSFGFKKGQSVTAKV 69
Query: 554 LGV--KSKRITVT 564
V + +R ++
Sbjct: 70 TSVDEEKQRFLLS 82
|
Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 83 |
| >gnl|CDD|233102 TIGR00717, rpsA, ribosomal protein S1 | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 1e-07
Identities = 84/360 (23%), Positives = 142/360 (39%), Gaps = 51/360 (14%)
Query: 226 SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQ 281
LE ++EG V+ VK+I D G + G G L +++ ++ VK G ++
Sbjct: 181 LLENLKEGDVVKGVVKNITDFGAFVDLG--GVDGLLHITDMSWKRVKHPSEYVKVGQEVK 238
Query: 282 GVVRSIDRTRKVVYLS---SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
V D+ + + LS D + K G ++ RV ++ + GV
Sbjct: 239 VKVIKFDKEKGRISLSLKQLGEDPWEA-IEKKFP--------VGDKITGRVTNLTDYGVF 289
Query: 339 LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NP 393
+ G V + + ++ + +V IL +DP R + L L NP
Sbjct: 290 VEIEEGIEGLVHVSEMSWVKKNSHPSKVVKKGDEVEVMILDIDPERRRLSLGLKQCKANP 349
Query: 394 YLL----HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLL---DIPSTPVSTPA--YVTISD 444
+ H K+ I D V ++ G+ L+ DI A D
Sbjct: 350 WEQFEEKHPVGDRVTGKIKKITDFGAFVELEGGIDGLIHLSDISWDKDGREADHLYKKGD 409
Query: 445 VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG 504
E V ++K+ K R+ LG + L + +E + K G VVKG
Sbjct: 410 EIEAVVLAVDKEKK-----RIS-LGVKQLT--------ENPWEKFAAKY---KVGSVVKG 452
Query: 505 KVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRIT 562
KV + FGA V+ PGGV+ L +SE + KVG E+ +V+ + K+++++
Sbjct: 453 KVTEIKDFGAFVELPGGVEGLIRNSELSENRDEDKTDEIKVGDEVEAKVVDIDKKNRKVS 512
|
This model describes ribosomal protein S1, RpsA. This protein is found in most bacterial genomes in a single copy, but is not present in the Mycoplasmas. It is heterogeneous with respect to the number of repeats of the S1 RNA binding domain described by PFAM model pfam00575: six repeats in E. coli and most other bacteria, four in Bacillus subtilis and some other species. rpsA is an essential gene in E. coli but not in B. subtilis. It is associated with the cytidylate kinase gene cmk in many species, and fused to it in Treponema pallidum. RpsA is proposed (Medline:97323001) to assist in mRNA degradation. This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 516 |
| >gnl|CDD|240203 cd05698, S1_Rrp5_repeat_hs6_sc5, S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 1e-07
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
G+ G ++ V G IV F VK P +SE I P + F+VG + +VL
Sbjct: 1 GLKTHGTIVKVKPNGCIVSFYNNVKGFLPKSELSEAFIKDPEEHFRVGQVVKVKVLSCDP 60
Query: 557 KSKRITVTHK 566
+ +R+ ++ K
Sbjct: 61 EQQRLLLSCK 70
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 70 |
| >gnl|CDD|180908 PRK07252, PRK07252, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-07
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1516
+GD + G I ++ YG F+ +EN GL H+SE+ +DNI + + GE+V V+++
Sbjct: 3 IGDKLKGTITGIKPYGAFVALEN-GTTGLIHISEIKTGFIDNIHQLLKVGEEVLVQVVDF 61
Query: 1517 DKEKRRISLGMKS 1529
D+ + SL +++
Sbjct: 62 DEYTGKASLSLRT 74
|
Length = 120 |
| >gnl|CDD|234623 PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-07
Identities = 75/288 (26%), Positives = 114/288 (39%), Gaps = 46/288 (15%)
Query: 662 SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG 721
+ ++ G +V G V V N V V V K S+G IP L + + +K +K G
Sbjct: 295 ELEKQIRRGDIVKGTVVSVNENEVFVDVGYK--SEGVIPLRELTL--DEISSLKESVKVG 350
Query: 722 YEFDQLLV-LDNESSNLLLSAK-YSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
E + ++ L++E ++LS K + ++L V G V +++ G V
Sbjct: 351 DEIEVKVLKLEDEDGYVVLSKKEADREKAWKEL---EEAFENGEPVKGKVKEVVKGGLLV 407
Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN-SETGRITLSLKQSCCSST 838
G + F P S G DLS+ Y GQ + I++ N ++ LS K
Sbjct: 408 D-YGGVRAFLPASHVELGYVEDLSE--YKGQELEVKIIEFNRKRRKKVVLSRKA------ 458
Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
L EEK E W G V+EG+V DFG V
Sbjct: 459 --------ILEEEKEKK--------KEETW-NSLEEGDVVEGEVKRLTDFGAFVDIG--- 498
Query: 899 DVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 939
V G + +++ VE G I+ ILD+ K + + LSLK
Sbjct: 499 GVDGLLHVSEISWGRVEKPSDVLKVGDEIKVYILDIDKENKKLSLSLK 546
|
Length = 647 |
| >gnl|CDD|236126 PRK07899, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 2e-07
Identities = 32/96 (33%), Positives = 56/96 (58%), Gaps = 8/96 (8%)
Query: 1441 SRTA----SQSEI--NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED 1494
SR A +QSE+ L+ L G + G + + ++G F+ + + GL HVSELS
Sbjct: 186 SRRAWLEQTQSEVRSEFLNQLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWK 243
Query: 1495 HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
H+D+ + G++V V++L VD ++ R+SL +K++
Sbjct: 244 HIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKAT 279
|
Length = 486 |
| >gnl|CDD|238094 cd00164, S1_like, S1_like: Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-07
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
G + I K G FV +GV+G SEL +PS ++ VG V+ +++ P R
Sbjct: 2 TGKVVSITKFGVFVELEDGVEGLVHISELSDKFVKDPSEVFKVGDEVEVKVLEVDPEKGR 61
Query: 650 INLS 653
I+LS
Sbjct: 62 ISLS 65
|
Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold. Length = 65 |
| >gnl|CDD|238094 cd00164, S1_like, S1_like: Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-07
Identities = 23/65 (35%), Positives = 33/65 (50%)
Query: 765 VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 824
V G V +I + G FV + G S+ D D S+ + VG V +L+V+ E G
Sbjct: 1 VTGKVVSITKFGVFVELEDGVEGLVHISELSDKFVKDPSEVFKVGDEVEVKVLEVDPEKG 60
Query: 825 RITLS 829
RI+LS
Sbjct: 61 RISLS 65
|
Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold. Length = 65 |
| >gnl|CDD|240201 cd05696, S1_Rrp5_repeat_hs4, S1_Rrp5_repeat_hs4: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 4e-07
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 408 GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI 467
G + D KV +V+ LG + + +V IS +++++V +K G+ + RI
Sbjct: 1 GAVVDSVKVTKVEPDLGAVFE---LKDGLLGFVHISHLSDDKVPSDTGPFKAGTTHKARI 57
Query: 468 LGFRHLEGL 476
+G+ ++GL
Sbjct: 58 IGYSPMDGL 66
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 4 (hs4). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 71 |
| >gnl|CDD|240210 cd05705, S1_Rrp5_repeat_hs14, S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 5e-07
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 1370 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVE 1426
+++GYV +VT +G F LS + +VL N++ +V P K P GKL+ +VLSV
Sbjct: 6 LLRGYVSSVTKQGVFFRLSSSIVGRVLFQNVTKYFVSDPSLYNKYLPEGKLLTAKVLSVN 65
Query: 1427 PLSKRVEVT 1435
VE++
Sbjct: 66 SEKNLVELS 74
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 74 |
| >gnl|CDD|237516 PRK13806, rpsA, 30S ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 6e-07
Identities = 50/221 (22%), Positives = 86/221 (38%), Gaps = 10/221 (4%)
Query: 440 VTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDV--- 496
V IS+++ V+K ++ G VRV++LG + + S + V
Sbjct: 230 VHISELSWSRVQKADEAVSVGDTVRVKVLGIERAKKGKGLRISLSIKQAGGDPWDTVGDR 289
Query: 497 -KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE-IVKPGKKFKVGAELVFRV- 553
K G V GKV+ + FGA V+ G++ L + MS + KP G + ++
Sbjct: 290 LKAGDKVTGKVVRLAPFGAFVEILPGIEGLVHVSEMSWTRRVNKPEDVVAPGDAVAVKIK 349
Query: 554 -LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
+ +RI+++ + + +A T G + K + G FV GV G
Sbjct: 350 DIDPAKRRISLSLRDAEGDPWADVAERFAPGT---TVTGTVEKRAQFGLFVNLAPGVTGL 406
Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
P S + G V + A R+I+L+
Sbjct: 407 LPASVISRAGKPATYEKLKPGDSVTLVVEEIDTAKRKISLA 447
|
Length = 491 |
| >gnl|CDD|223631 COG0557, VacB, Exoribonuclease R [Transcription] | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 6e-07
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------DNIETI 1502
VG+ G + V S+G F+ + L GL H+S L +D+ + +
Sbjct: 619 KKRVGEEFDGVVTGVTSFGFFVELPELGLEGLVHISSLPDDYYHFDERGQALVGEKSGKV 678
Query: 1503 YRAGEKVKVKILKVDKEKRRISLGM 1527
YR G++VKVK+ VD ++R+I +
Sbjct: 679 YRLGDEVKVKVTSVDLDERKIDFEL 703
|
Length = 706 |
| >gnl|CDD|234623 PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 7e-07
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 8/132 (6%)
Query: 442 ISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGI--LKASAFEGLVFTHSDVKP 498
+S+++ V K K G ++V IL + + L+ + L +E +
Sbjct: 506 VSEISWGRVEKPSDVLKVGDEIKVYILDIDKENKKLSLSLKKLLPDPWENVE---EKYPV 562
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 557
G +V GKV+ + FGA V+ GV L + +S I KP G E+ ++L V
Sbjct: 563 GSIVLGKVVRIAPFGAFVELEPGVDGLVHISQISWKRIDKPEDVLSEGEEVKAKILEVDP 622
Query: 558 -SKRITVTHKKT 568
KRI ++ K+
Sbjct: 623 EEKRIRLSIKEV 634
|
Length = 647 |
| >gnl|CDD|197648 smart00316, S1, Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 1e-06
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
VG +V+ +TEI P + G G G I I+E++D + V++ K+G V +++
Sbjct: 2 VGDVVEGTVTEITPGGAFVDLGNGVEGLIPISELSDKR---VKDPEEVLKVGDEVKVKVL 58
Query: 1123 AKSNK 1127
+ +
Sbjct: 59 SVDEE 63
|
Length = 72 |
| >gnl|CDD|197648 smart00316, S1, Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-06
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLE 1318
GD+V G +++I G G V +G + G + +EL + V DP G VK KVL
Sbjct: 2 VGDVVEGTVTEITPG--GAFVDLGNGVEGLIPISELSDKRVKDPEEVLKVGDEVKVKVLS 59
Query: 1319 ISRTVRGTFHVELSLR 1334
+ + LSL+
Sbjct: 60 VDEEKG---RIILSLK 72
|
Length = 72 |
| >gnl|CDD|240198 cd05693, S1_Rrp5_repeat_hs1_sc1, S1_Rrp5_repeat_hs1_sc1: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 2e-06
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 18/97 (18%)
Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSN------------ 1110
G LV ++ EI L+L + G G + IT ++D + +E L
Sbjct: 3 EGMLVLGQVKEITKLDLVISLPNGLTGYVPITNISDAYTERLEELDEESEEEDDEEELPD 62
Query: 1111 ----FKIGQTVTARIIAKSNKPDMKKSFLWELSIKPS 1143
F +GQ V ++++ KK ELS++P
Sbjct: 63 LEDLFSVGQLVRCKVVSLDKSKSGKKRI--ELSLEPE 97
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 1 (hs1) and S. cerevisiae S1 repeat 1 (sc1). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 100 |
| >gnl|CDD|240209 cd05704, S1_Rrp5_repeat_hs13, S1_Rrp5_repeat_hs13: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-06
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLE 1318
EG + G ++K++ G L VQ+ G V L + +PL G+ G+ V+C +L
Sbjct: 3 EGAVTLGMVTKVIPHSG-LTVQLPFGKTGLVSIFHLSDSYTENPLEGFKPGKIVRCCILS 61
Query: 1319 ISRTVRGTFHVELSLR 1334
+LSLR
Sbjct: 62 KKDG-----KYQLSLR 72
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 13 (hs13). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 72 |
| >gnl|CDD|235851 PRK06676, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 3e-06
Identities = 87/357 (24%), Positives = 148/357 (41%), Gaps = 39/357 (10%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
+V+ G VV G+V+ V+ V G V+ + P+ +S I KVG EL
Sbjct: 13 KEVEVGDVVTGEVLKVEDKQVFVNIEGYKVEGVIPISELSNDHIEDINDVVKVGDELEVY 72
Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
VL V+ + L K +L ++ + ++ + +T++ K G V G
Sbjct: 73 VLKVEDGEGNL----LLSKRRLEAEKAWDKLEEKFEEGEVVEVKVTEVVKGGLVVDV-EG 127
Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED---- 664
V+GF P S + E S + G+ ++ +I+ P R+ LS R +
Sbjct: 128 VRGFIPASLISTR-FVEDFSDF-KGKTLEVKIIELDPEKNRVILS-----RRAVVEEERA 180
Query: 665 -------DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKS 716
+K G +V G V +T V + G G + L+ + +E
Sbjct: 181 AKKEELLSSLKEGDVVEGTVARLTDFGAFVDI---GGVDGLVHISELSHERVEKP---SE 234
Query: 717 VIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIET 775
V+ G E + ++L +D E+ + LS K +L + + + V+ G V + +
Sbjct: 235 VVSVGQEVEVKVLSIDWETERISLSLKDTLPGPWEGV---EEKLPEGDVIEGTVKRLTDF 291
Query: 776 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
G FV L + G S+ A S+ GQ V+ +L+VN E RI+LS+K
Sbjct: 292 GAFVEVLPGVEGLVHISQISHKHIATPSEVLEEGQEVKVKVLEVNEEEKRISLSIKA 348
|
Length = 390 |
| >gnl|CDD|237516 PRK13806, rpsA, 30S ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 3e-06
Identities = 83/358 (23%), Positives = 139/358 (38%), Gaps = 53/358 (14%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
G+ V+GKV G V+ G +A CP+ + + P + VG F + V+
Sbjct: 116 GVPVEGKVTGTCKGGFNVEVLGR-RAFCPVSQIDLRYVEDP--ESYVGQTFQFLITRVEE 172
Query: 559 --KRITVTHKKTLVKSKLAILSSYAE-ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
+ I V+ + L + + L ++ E + + G +T++ G FV GV+G
Sbjct: 173 NGRNIVVSRRALLEREQKEALEAFMETVKEGDVVEGTVTRLAPFGAFVELAPGVEGMVHI 232
Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR----RINLSFMMKPTRVSED------D 665
SEL + VG V+ +++ A + RI+LS + D D
Sbjct: 233 SELSWSRVQKADEAVSVGDTVRVKVLGIERAKKGKGLRISLSI----KQAGGDPWDTVGD 288
Query: 666 LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF- 724
+K G V+G V + P V I G E L H+ + + V KP
Sbjct: 289 RLKAGDKVTGKVVRLAPFGAFVE-ILPG-------IEGLV-HVSEMSWTRRVNKPEDVVA 339
Query: 725 --DQLLV----LDNESSNLLLSAKYSL----INSAQQLPSDASHIHPNSVVHGYVCNIIE 774
D + V +D + LS + + + A++ P + V G V +
Sbjct: 340 PGDAVAVKIKDIDPAKRRISLSLRDAEGDPWADVAERFA-------PGTTVTGTVEKRAQ 392
Query: 775 TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTY---YVGQSVRSNILDVNSETGRITLS 829
G FV +TG P S RA TY G SV + ++++ +I+L+
Sbjct: 393 FGLFVNLAPGVTGLLPASVI---SRAGKPATYEKLKPGDSVTLVVEEIDTAKRKISLA 447
|
Length = 491 |
| >gnl|CDD|105491 PRK12269, PRK12269, bifunctional cytidylate kinase/ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (124), Expect = 3e-06
Identities = 78/371 (21%), Positives = 151/371 (40%), Gaps = 50/371 (13%)
Query: 1204 QEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIV 1263
+EF ++ G+ + V+ +++ +K + L L+ FQ D ++ N D+V
Sbjct: 534 REFVKK---GQTIELKVIRLDQAEKRINLSLKHFQ---PDPWLEFENK-----FGVNDVV 582
Query: 1264 GGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC-VSDPLSGYDEGQFVKCKVLEISRT 1322
GR++KI G +++ + G H +E + S P G V+C +L
Sbjct: 583 KGRVTKIADF--GAFIELAEGIEGLAHISEFSWVKKTSKPSDMVKIGDEVECMIL----- 635
Query: 1323 VRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKG 1382
D + S L P + +E + + + VT+ G
Sbjct: 636 -------------GYDIQAGRVSLGLKQVTANPWEEIEARYPVGARFTRR--IVKVTNAG 680
Query: 1383 CFIMLSRKLDAKVLLSNLSDGYVESP-EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
FI + +D + + +LS P + E +GK + V+ +P ++R+ + +K
Sbjct: 681 AFIEMEEGIDGFLHVDDLSWVKRTRPADHELEVGKEIECMVIECDPQARRIRLGVKQ--- 737
Query: 1442 RTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIEN--TNLVGLCHVSELSEDHVDN 1498
S + +N + VG V G++ V +G+F+ + LV H+ E +
Sbjct: 738 --LSDNPWQVFANAYGVGSTVEGEVSSVTDFGIFVRVPGGVEGLVRKQHLVENRDGDPGE 795
Query: 1499 IETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ--MSSEEESDEAIEEVGS 1556
Y G++VK I+ ++ + R+++ ++ K D L MS+ DE GS
Sbjct: 796 ALRKYAVGDRVKAVIVDMNVKDRKVAFSVRDYQRKVQRDELSRYMSAPRGEDE-----GS 850
Query: 1557 YNRSSLLENSS 1567
+ L+ +S
Sbjct: 851 FTLGDLMRQTS 861
|
Length = 863 |
| >gnl|CDD|240191 cd05686, S1_pNO40, S1_pNO40: pNO40 , S1-like RNA-binding domain | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 5e-06
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 1460 IVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKE 1519
I G++ V YG F+ I GL H S +S VD+ + GEKV VK++ +
Sbjct: 6 IFKGEVASVTEYGAFVKIPGCRKQGLVHKSHMSSCRVDDPSEVVDVGEKVWVKVIGRE-M 64
Query: 1520 KRRISLGMK 1528
K ++ L +
Sbjct: 65 KDKMKLSLS 73
|
pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was identified through a yeast two-hybrid interaction screen of a human kidney cDNA library using the pinin (pnn) protein as bait. pNO40 is thought to play a role in ribosome maturation and/or biogenesis. Length = 73 |
| >gnl|CDD|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 7e-06
Identities = 84/364 (23%), Positives = 142/364 (39%), Gaps = 62/364 (17%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
+ G VV+G V + +GA V GGV L + +S + P + VG E+ +VL
Sbjct: 200 EEGQVVEGVVKNITDYGAFVDL-GGVDGLLHITDISWKRVNHPSEVVNVGDEVKVKVLKF 258
Query: 557 --KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
+ KR+++ K+ AI Y + G +T I +G FV G++G
Sbjct: 259 DKEKKRVSLGLKQLGEDPWEAIEKKYPVGS---KVKGKVTNITDYGAFVELEEGIEGLVH 315
Query: 615 RSELGLD----PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED------ 664
SE+ PS + VGQ V+ ++ RRI+L +K + E+
Sbjct: 316 VSEMSWTKKNKH---PSKVVSVGQEVEVMVLEIDEEKRRISLG--LK--QCKENPWEEFA 368
Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKG------------TIPTEHLADHLEHAT 712
+ +G +V G V +T V G G E + +
Sbjct: 369 EKYPVGDVVEGKVKNITDFGAFV-----GLEGGIDGLVHLSDISWDKKGEEAVELYKKGD 423
Query: 713 VMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHG 767
+++V+ L +D E + L K QL D A S+V G
Sbjct: 424 EVEAVV---------LKVDVEKERISLGIK--------QLEEDPFEEFAKKHKKGSIVTG 466
Query: 768 YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 827
V + + G FV + G S+ + D ++ VG V + +++++ + RI+
Sbjct: 467 TVTEVKDKGAFVELEDGVEGLIRASELSRDRVEDATEVLKVGDEVEAKVINIDRKNRRIS 526
Query: 828 LSLK 831
LS+K
Sbjct: 527 LSIK 530
|
Length = 565 |
| >gnl|CDD|227438 COG5107, RNA14, Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 7e-06
Identities = 61/246 (24%), Positives = 102/246 (41%), Gaps = 26/246 (10%)
Query: 1664 FERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVA-YFN 1722
+++ + VW Y +++ ++D +KA ER + E + L ++++ Y+
Sbjct: 291 HNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGI------EMSPSLTMFLSEYYE 344
Query: 1723 LENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHS 1782
L N+ EEAV F + Q K + + + ELL K I K
Sbjct: 345 LVND-----EEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFV 399
Query: 1783 CKVWLRRVQRLLKQQQEGVQAVVQRALL----SLPRHKHIKFISQTAILEFKN-GVADRG 1837
V L V R + G++A R L H +I A +E+ G
Sbjct: 400 FCVHLNYVLR-----KRGLEAA--RKLFIKLRKEGIVGHHVYI-YCAFIEYYATGDRATA 451
Query: 1838 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLE 1897
++FE L ++P T YL IR+ D + R LFE ++ L ++K ++ K +E
Sbjct: 452 YNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVE-RLEKTQLKRIYDKMIE 510
Query: 1898 YEKSVG 1903
YE VG
Sbjct: 511 YESMVG 516
|
Length = 660 |
| >gnl|CDD|105491 PRK12269, PRK12269, bifunctional cytidylate kinase/ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (121), Expect = 8e-06
Identities = 27/92 (29%), Positives = 55/92 (59%), Gaps = 4/92 (4%)
Query: 1444 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1503
A Q+ +++H+ D V G +K S+G FI + + GL HV+++S HV
Sbjct: 480 ARQAREEFFNSVHIEDSVSGVVKSFTSFGAFIDLGGFD--GLLHVNDMSWGHVARPREFV 537
Query: 1504 RAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1535
+ G+ +++K++++D+ ++RI+L +K +F+ D
Sbjct: 538 KKGQTIELKVIRLDQAEKRINLSLK--HFQPD 567
|
Length = 863 |
| >gnl|CDD|240194 cd05689, S1_RPS1_repeat_ec4, S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 9e-06
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 1463 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-NIETIYRAGEKVKVKILKVDKEKR 1521
G++ + YG F+ +E + GL HVSE+ + + + + G++V+V +L +D+E+R
Sbjct: 9 GKVTNLTDYGCFVELEE-GVEGLVHVSEMDWTNKNIHPSKVVSLGDEVEVMVLDIDEERR 67
Query: 1522 RISLG 1526
RISLG
Sbjct: 68 RISLG 72
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (ec4) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. Length = 72 |
| >gnl|CDD|234623 PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 1e-05
Identities = 49/208 (23%), Positives = 80/208 (38%), Gaps = 51/208 (24%)
Query: 764 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
VV G V + + G FV +G + G S+ G+ S VG ++ ILD++ E
Sbjct: 480 VVEGEVKRLTDFGAFVD-IGGVDGLLHVSEISWGRVEKPSDVLKVGDEIKVYILDIDKEN 538
Query: 824 GRITLSLKQSCCSSTDASFMQEHFLLE---EKIAMLQSSKHNGSELKWVEGFIIGSVIEG 880
+++LSLK+ LL E + E + +GS++ G
Sbjct: 539 KKLSLSLKK---------------LLPDPWENVE---------------EKYPVGSIVLG 568
Query: 881 KVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERL 933
KV FG V E D G + Q++ ++ G ++A IL+V E+
Sbjct: 569 KVVRIAPFGAFVELEPGVD--GLVHISQISWKRIDKPEDVLSEGEEVKAKILEVDPEEKR 626
Query: 934 VDLSLKTVFIDRFREANSNRQAQKKKRK 961
+ LS+K E +K
Sbjct: 627 IRLSIK--------EVEEEPGDIEKVEL 646
|
Length = 647 |
| >gnl|CDD|216000 pfam00575, S1, S1 RNA binding domain | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
G +T++ K G FV NGV+GF P SE+ D +P + VG V+ +++ RI
Sbjct: 10 GTVTRVTKGGAFVDLGNGVEGFIPISEISDDRVEDPDEVLKVGDEVEVKVLKVDKERGRI 69
Query: 651 NLS 653
LS
Sbjct: 70 ILS 72
|
The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure. Length = 74 |
| >gnl|CDD|215104 PLN00207, PLN00207, polyribonucleotide nucleotidyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 1e-05
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 1432 VEVTLKTSDSRTASQSEINNLSNL-HVGDIVIG-QIKRVESYGLFITIENTNLVGLCHVS 1489
V++T K S S++ I++L+ + VGDI +IK + YG F+ I GLCH+S
Sbjct: 727 VKITAKDLSSLEKSKAIISSLTMVPTVGDIYRNCEIKSIAPYGAFVEIA-PGREGLCHIS 785
Query: 1490 ELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
ELS + + E ++ G+++ VK+++V+
Sbjct: 786 ELSSNWLAKPEDAFKVGDRIDVKLIEVND 814
|
Length = 891 |
| >gnl|CDD|233102 TIGR00717, rpsA, ribosomal protein S1 | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 2e-05
Identities = 116/582 (19%), Positives = 216/582 (37%), Gaps = 79/582 (13%)
Query: 755 DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRS 814
P S+V G V I + FV + G P+ + D VG V
Sbjct: 12 KTEETRPGSIVKGTVVAINKDTVFVDVGLKSEGRIPKE-----EFLDAPLEIQVGDEVEV 66
Query: 815 NILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII 874
+ V G LS +++ Q H L + L+ + GS VEG I+
Sbjct: 67 YLDRVEDRFGETVLSREKA----------QRHELWIK----LEKAYEEGSI---VEGKIV 109
Query: 875 GSVIEGKVHESNDFGVVVSF--EEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAER 932
G V G + D V +F DV L G T++ I+ + +
Sbjct: 110 GKVKGGFI---VDLNGVEAFLPGSQVDVKPIKDLDSLIGKTLK------FKIIKLDQKRN 160
Query: 933 LVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPE 992
+ +S + + ++ + + E ++L V +V+ + + + L
Sbjct: 161 NIVVSRRAYL-----------EEERSQAREELLENLKEGDVVKGVVKNITDFGAFVDLGG 209
Query: 993 YNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS 1052
+ + +S + K P + GQ V V + GR+ L LK +
Sbjct: 210 VDGLLHITDMS-WKRVKHPSEYVKVGQEV--KVKVIKFDKEKGRISLSLK-----QLGED 261
Query: 1053 KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFK 1112
+ + VG + +T + + ++ G G +H++E++ K N + K
Sbjct: 262 PWEAIEKKFPVGDKITGRVTNLTDYGVFVEIEEGIEGLVHVSEMSWVKKNSHPSKV--VK 319
Query: 1113 IGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVY 1172
G V I+ D ++ L L +K E FEE +G RVTG +
Sbjct: 320 KGDEVEVMIL----DIDPERRRL-SLGLKQCKANPWEQ-----FEE-KHPVGDRVTGKIK 368
Query: 1173 KVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1232
K+ + A + + + + + D +++ +E + G + VL+++KEKK + L
Sbjct: 369 KITDFGAFVELEGGIDGLIHLSDISWDKDG-READHLYKKGDEIEAVVLAVDKEKKRISL 427
Query: 1233 VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFT 1292
++ + +K G +V G++++I G V++ + G + +
Sbjct: 428 GVKQLTENPWEKFAAKYK--------VGSVVKGKVTEIKD--FGAFVELPGGVEGLIRNS 477
Query: 1293 ELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
EL D G V+ KV++I + R V LS++
Sbjct: 478 ELSENRDEDKTDEIKVGDEVEAKVVDIDKKNR---KVSLSVK 516
|
This model describes ribosomal protein S1, RpsA. This protein is found in most bacterial genomes in a single copy, but is not present in the Mycoplasmas. It is heterogeneous with respect to the number of repeats of the S1 RNA binding domain described by PFAM model pfam00575: six repeats in E. coli and most other bacteria, four in Bacillus subtilis and some other species. rpsA is an essential gene in E. coli but not in B. subtilis. It is associated with the cytidylate kinase gene cmk in many species, and fused to it in Treponema pallidum. RpsA is proposed (Medline:97323001) to assist in mRNA degradation. This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 516 |
| >gnl|CDD|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 2e-05
Identities = 116/506 (22%), Positives = 180/506 (35%), Gaps = 126/506 (24%)
Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
A FE S+ + G +VKG V+A+D +V + PL EF+ + +
Sbjct: 16 AELFEE-SLKESETREGSIVKGTVVAIDKDYVLVDVGLKSEGRIPL---EEFKNEQGELE 71
Query: 543 FKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
KVG E+ V ++ ++ +K L E + I G I K G
Sbjct: 72 VKVGDEVEVYVERIEDGFGETVLSREKAKRLEAWDKLEKAFE--NGEIVEGVINGKVKGG 129
Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSF 654
F NGV+ F P S++ + P + G+ ++ +++ ++I SRR L
Sbjct: 130 -FTVDLNGVEAFLPGSQVDVRPV--RDTDPLEGKELEFKVIKLDKKRNNIVVSRRAVLEE 186
Query: 655 MMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
R ++L++ G +V GVV +T V + G + D L H
Sbjct: 187 ERAEER---EELLENLEEGQVVEGVVKNITDYGAFVDL-------GGV------DGLLHI 230
Query: 712 TVM--------KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-----AS 757
T + V+ G E ++L D E + L K QL D
Sbjct: 231 TDISWKRVNHPSEVVNVGDEVKVKVLKFDKEKKRVSLGLK--------QLGEDPWEAIEK 282
Query: 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGF-------------APRSKAVDGQRADLSK 804
S V G V NI + G FV + G P SK
Sbjct: 283 KYPVGSKVKGKVTNITDYGAFVELEEGIEGLVHVSEMSWTKKNKHP------------SK 330
Query: 805 TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE---EKIAMLQSSKH 861
VGQ V +L+++ E RI+L LKQ E E+ A K+
Sbjct: 331 VVSVGQEVEVMVLEIDEEKRRISLGLKQ---------------CKENPWEEFA----EKY 371
Query: 862 NGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQL--------AGAT 913
+G V+EGKV DFG V E + G + + A
Sbjct: 372 P-----------VGDVVEGKVKNITDFGAFVGLEG--GIDGLVHLSDISWDKKGEEAVEL 418
Query: 914 VESGSVIQAAILDVAKAERLVDLSLK 939
+ G ++A +L V + + L +K
Sbjct: 419 YKKGDEVEAVVLKVDVEKERISLGIK 444
|
Length = 565 |
| >gnl|CDD|216000 pfam00575, S1, S1 RNA binding domain | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-05
Identities = 24/74 (32%), Positives = 34/74 (45%)
Query: 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
VV G V + + G FV + GF P S+ D + D + VG V +L
Sbjct: 1 KPEEGDVVKGTVTRVTKGGAFVDLGNGVEGFIPISEISDDRVEDPDEVLKVGDEVEVKVL 60
Query: 818 DVNSETGRITLSLK 831
V+ E GRI LS++
Sbjct: 61 KVDKERGRIILSIR 74
|
The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure. Length = 74 |
| >gnl|CDD|235851 PRK06676, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 4e-05
Identities = 24/73 (32%), Positives = 49/73 (67%)
Query: 1448 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1507
+N++ + VGD+V G++ +VE +F+ IE + G+ +SELS DH+++I + + G+
Sbjct: 8 SLNSVKEVEVGDVVTGEVLKVEDKQVFVNIEGYKVEGVIPISELSNDHIEDINDVVKVGD 67
Query: 1508 KVKVKILKVDKEK 1520
+++V +LKV+ +
Sbjct: 68 ELEVYVLKVEDGE 80
|
Length = 390 |
| >gnl|CDD|240196 cd05691, S1_RPS1_repeat_ec6, S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 4e-05
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
G +V GKV VD+ GA V+ GV+ +S + ++FKVG E+ ++ V
Sbjct: 1 GSIVTGKVTEVDAKGATVKLGDGVEGFLRAAELSRDRVEDATERFKVGDEVEAKITNVDR 60
Query: 557 KSKRITVTHK 566
K+++I+++ K
Sbjct: 61 KNRKISLSIK 70
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 6 (ec6) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. Length = 73 |
| >gnl|CDD|240208 cd05703, S1_Rrp5_repeat_hs12_sc9, S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 5e-05
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 1371 VQGYVKNVTSKGCFIM-LSRKLDAKVLLSNLSD--GYVESPEKEFPIGKLVAGRVLSVEP 1427
V G+V NV SK + +S + ++ L +LSD +E PEK+FPIG+ + +V+ V+
Sbjct: 4 VTGFVNNV-SKEFVWLTISPDVKGRIPLLDLSDDVSVLEHPEKKFPIGQALKAKVVGVDK 62
Query: 1428 LSKRVEVTL 1436
K + ++
Sbjct: 63 EHKLLRLSA 71
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 73 |
| >gnl|CDD|240190 cd05685, S1_Tex, S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 5e-05
Identities = 19/67 (28%), Positives = 38/67 (56%)
Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
M+++G V NVT G F+ + K D + +S ++D +V P +G +V +V+S++
Sbjct: 2 MVLEGVVTNVTDFGAFVDIGVKQDGLIHISKMADRFVSHPSDVVSVGDIVEVKVISIDEE 61
Query: 1429 SKRVEVT 1435
R+ ++
Sbjct: 62 RGRISLS 68
|
The tex gene is essential in Bortella pertusis and is named for its role in toxin expression. Tex has two functional domains, an N-terminal domain homologous to the Escherichia coli maltose repression protein, which is a poorly defined transcriptional factor, and a C-terminal S1 RNA-binding domain. Tex is found in prokaryotes, eukaryotes, and archaea. Length = 68 |
| >gnl|CDD|216000 pfam00575, S1, S1 RNA binding domain | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 7e-05
Identities = 20/71 (28%), Positives = 38/71 (53%)
Query: 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1426
+V+G V VT G F+ L ++ + +S +SD VE P++ +G V +VL V+
Sbjct: 4 EGDVVKGTVTRVTKGGAFVDLGNGVEGFIPISEISDDRVEDPDEVLKVGDEVEVKVLKVD 63
Query: 1427 PLSKRVEVTLK 1437
R+ ++++
Sbjct: 64 KERGRIILSIR 74
|
The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure. Length = 74 |
| >gnl|CDD|216000 pfam00575, S1, S1 RNA binding domain | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 8e-05
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 1258 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVL 1317
EGD+V G ++++ G G V +G + G + +E+ + V DP G V+ KVL
Sbjct: 3 EEGDVVKGTVTRVTKG--GAFVDLGNGVEGFIPISEISDDRVEDPDEVLKVGDEVEVKVL 60
Query: 1318 EISRTVRGTFHVELSLR 1334
++ + LS+R
Sbjct: 61 KVDKERGRII---LSIR 74
|
The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure. Length = 74 |
| >gnl|CDD|237516 PRK13806, rpsA, 30S ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 8e-05
Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 32/177 (18%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF---------EIVKPGKKFKV 545
VK G VV+G V + FGA V+ GV+ + H+SE E V G +V
Sbjct: 199 TVKEGDVVEGTVTRLAPFGAFVELAPGVEGMV---HISELSWSRVQKADEAVSVGDTVRV 255
Query: 546 GAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYA----EATDRL----ITHGWITKIE 597
+VLG I K ++ L+I + DRL G + ++
Sbjct: 256 ------KVLG-----IERAKKGKGLRISLSIKQAGGDPWDTVGDRLKAGDKVTGKVVRLA 304
Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLS 653
G FV G++G SE+ +P + G V +I PA RRI+LS
Sbjct: 305 PFGAFVEILPGIEGLVHVSEMSWTRRVNKPEDVVAPGDAVAVKIKDIDPAKRRISLS 361
|
Length = 491 |
| >gnl|CDD|240211 cd05706, S1_Rrp5_repeat_sc10, S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 8e-05
Identities = 16/71 (22%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
L VGDI+ G++ +V + + + N + G +++ +D+ + + ++ + V+ +L
Sbjct: 1 LKVGDILPGRVTKVNDRYVLVQLGN-KVTGPSFITDALDDYSEALPYKFKKNDIVRACVL 59
Query: 1515 KVDKEKRRISL 1525
VD ++I+L
Sbjct: 60 SVDVPNKKIAL 70
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 73 |
| >gnl|CDD|240215 cd05789, S1_Rrp4, S1_Rrp4: Rrp4 S1-like RNA-binding domain | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 9e-05
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE----TIYRAGEKVKVK 1512
VGD+VIG++ V + I N+ + +SE++ D E + G+ + +
Sbjct: 6 VGDVVIGRVTEVGFKRWKVDI-NSPYDAVLPLSEVNLPRTDEDELNMRSYLDEGDLIVAE 64
Query: 1513 ILKVDKEKRRISLGMKSS 1530
+ VD +SL +S
Sbjct: 65 VQSVD-SDGSVSLHTRSL 81
|
S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure". Length = 86 |
| >gnl|CDD|240202 cd05697, S1_Rrp5_repeat_hs5, S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 1e-04
Identities = 19/68 (27%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
G +V G I+++ G+F+ + + ++ GL L++ + + E ++ G KVK ++L V+
Sbjct: 1 GQVVKGTIRKLRPSGIFVKL-SDHIKGLVPPMHLADVRLKHPEKKFKPGLKVKCRVLSVE 59
Query: 1518 KEKRRISL 1525
E++R+ L
Sbjct: 60 PERKRLVL 67
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 5 (hs5) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 69 |
| >gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-04
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 11/86 (12%)
Query: 1456 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED--HVDNI------ET---IYR 1504
VG++ G I V +G F+ +++ + GL HVS L D D + E+ YR
Sbjct: 642 QVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESSGQTYR 701
Query: 1505 AGEKVKVKILKVDKEKRRISLGMKSS 1530
G++V+V++ V+ ++R+I + SS
Sbjct: 702 LGDRVEVRVEAVNMDERKIDFSLISS 727
|
Length = 813 |
| >gnl|CDD|224023 COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 13/85 (15%)
Query: 1059 SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVT 1118
S VGS ++ +IT I P ++ G G +HI+E+ D V+++ + K+GQ V
Sbjct: 1 MSMKVGSKLKGKITGITPYGAFVELEGGKTGLVHISEIAD---GFVKDIHDHLKVGQEVK 57
Query: 1119 ARI--IAKSNKPDMKKSFLWELSIK 1141
++ I ++ K LSI+
Sbjct: 58 VKVLDIDENGK--------ISLSIR 74
|
Length = 129 |
| >gnl|CDD|240203 cd05698, S1_Rrp5_repeat_hs6_sc5, S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 3e-04
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 1368 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1427
+ G + V GC + + + S LS+ +++ PE+ F +G++V +VLS +P
Sbjct: 1 GLKTHGTIVKVKPNGCIVSFYNNVKGFLPKSELSEAFIKDPEEHFRVGQVVKVKVLSCDP 60
Query: 1428 LSKRVEVTLK 1437
+R+ ++ K
Sbjct: 61 EQQRLLLSCK 70
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 70 |
| >gnl|CDD|240212 cd05707, S1_Rrp5_repeat_sc11, S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 3e-04
Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
G V G+V + N +T+ R + A++ + S S L+++++RF +G+ V G ++SI
Sbjct: 1 GDVVRGFVKNIANNGVFVTLGRGVDARVRV--SELSDSYLKDWKKRFKVGQLVKGKIVSI 58
Query: 1224 NKEKKLLRL 1232
+ + + +
Sbjct: 59 DPDNGRIEM 67
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 68 |
| >gnl|CDD|236305 PRK08582, PRK08582, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 21/72 (29%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1516
VG + G++ + ++G F+ + GL H+SE+++++V +I + G++V+VK+L V
Sbjct: 5 VGSKLQGKVTGITNFGAFVELPE-GKTGLVHISEVADNYVKDINDHLKVGDEVEVKVLNV 63
Query: 1517 DKEKRRISLGMK 1528
+ + +I L +K
Sbjct: 64 EDDG-KIGLSIK 74
|
Length = 139 |
| >gnl|CDD|240197 cd05692, S1_RPS1_repeat_hs4, S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 5e-04
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
G VV+G V + FGA V+ GG+ L + ++ + K G ++ +VL + +
Sbjct: 1 GSVVEGTVTRLKPFGAFVELGGGISGLVHISQIAHKRVKDVKDVLKEGDKVKVKVLSIDA 60
Query: 559 K-RITVTHK 566
+ RI+++ K
Sbjct: 61 RGRISLSIK 69
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (hs4) of the H. sapiens RPS1 homolog. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. Length = 69 |
| >gnl|CDD|240212 cd05707, S1_Rrp5_repeat_sc11, S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 6e-04
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 762 NSVVHGYVCNIIETGCFVRFLGR-LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
VV G+V NI G FV LGR + S+ D D K + VGQ V+ I+ ++
Sbjct: 1 GDVVRGFVKNIANNGVFVT-LGRGVDARVRVSELSDSYLKDWKKRFKVGQLVKGKIVSID 59
Query: 821 SETGRITLS 829
+ GRI ++
Sbjct: 60 PDNGRIEMT 68
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 68 |
| >gnl|CDD|240212 cd05707, S1_Rrp5_repeat_sc11, S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 6e-04
Identities = 21/68 (30%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
GD+V G +K + + G+F+T+ + VSELS+ ++ + + ++ G+ VK KI+ +D
Sbjct: 1 GDVVRGFVKNIANNGVFVTL-GRGVDARVRVSELSDSYLKDWKKRFKVGQLVKGKIVSID 59
Query: 1518 KEKRRISL 1525
+ RI +
Sbjct: 60 PDNGRIEM 67
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 68 |
| >gnl|CDD|232937 TIGR00358, 3_prime_RNase, VacB and RNase II family 3'-5' exoribonucleases | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 6e-04
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 1456 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------DNIETIYR 1504
VG G+I V +G+F+ +++ + GL H+S L D+ +YR
Sbjct: 571 KVGTEFSGEISSVTRFGMFVRLDDNGIDGLIHISTLHNDYYVFDQEKMALIGKGTGKVYR 630
Query: 1505 AGEKVKVKILKVDKEKRRI 1523
G++V VK+ +V+ E R I
Sbjct: 631 IGDRVTVKLTEVNMETRSI 649
|
This model is defined to identify a pair of paralogous 3-prime exoribonucleases in E. coli, plus the set of proteins apparently orthologous to one or the other in other eubacteria. VacB was characterized originally as required for the expression of virulence genes, but is now recognized as the exoribonuclease RNase R (Rnr). Its paralog in E. coli and H. influenzae is designated exoribonuclease II (Rnb). Both are involved in the degradation of mRNA, and consequently have strong pleiotropic effects that may be difficult to disentangle. Both these proteins share domain-level similarity (RNB, S1) with a considerable number of other proteins, and full-length similarity scoring below the trusted cutoff to proteins associated with various phenotypes but uncertain biochemistry; it may be that these latter proteins are also 3-prime exoribonucleases [Transcription, Degradation of RNA]. Length = 654 |
| >gnl|CDD|236126 PRK07899, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 7e-04
Identities = 53/169 (31%), Positives = 71/169 (42%), Gaps = 30/169 (17%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF---EIVKPGKKFKVGAELVFRVLG 555
G V KG V ++ +FGA V GGV L H+SE I P + +VG E+ VL
Sbjct: 209 GQVRKGVVSSIVNFGAFVDL-GGVDGLV---HVSELSWKHIDHPSEVVEVGQEVTVEVLD 264
Query: 556 VKSKRITVTHKKTLVKSKLAILSSYAEATD--RLI--TH-------GWITKIEKHGCFVR 604
V R V+ LS A D + TH G +TK+ G FVR
Sbjct: 265 VDMDRERVS------------LSLKATQEDPWQQFARTHAIGQIVPGKVTKLVPFGAFVR 312
Query: 605 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
G++G SEL P + VG V +++ RRI+LS
Sbjct: 313 VEEGIEGLVHISELAERHVEVPEQVVQVGDEVFVKVIDIDLERRRISLS 361
|
Length = 486 |
| >gnl|CDD|239908 cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 8e-04
Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 19/101 (18%)
Query: 116 SGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEI 175
G LP + + GM + G V + + + GGL GLA + +E
Sbjct: 2 EGTLPTNFSDLK-----PGMVVHGYVRNITPYGVFVEFLGGLTGLA-----PKSYISDEF 51
Query: 176 EANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSL 216
+ F GQ V+ V +D++K+ + LSL
Sbjct: 52 VTDPSFG----FKKGQSVTAKVTSVDEEKQ-----RFLLSL 83
|
Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 83 |
| >gnl|CDD|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 8e-04
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 1059 SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVT 1118
+ GS+V +TE+K ++ G G I +E++ D+ VE+ K+G V
Sbjct: 456 KKHKKGSIVTGTVTEVKDKGAFVELEDGVEGLIRASELSRDR---VEDATEVLKVGDEVE 512
Query: 1119 ARIIA--KSNK 1127
A++I + N+
Sbjct: 513 AKVINIDRKNR 523
|
Length = 565 |
| >gnl|CDD|240207 cd05702, S1_Rrp5_repeat_hs11_sc8, S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 9e-04
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL--KNICVSDPLSGYDEGQFVKCKVL 1317
GD+V ++ + L VQ+ +++GR+H +E+ + +PLS + GQ +K +V+
Sbjct: 1 GDLVKAKVKSVKPT--QLNVQLADNVHGRIHVSEVFDEWPDGKNPLSKFKIGQKIKARVI 58
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 11 (hs11) and S. cerevisiae S1 repeat 8 (sc8). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 70 |
| >gnl|CDD|197648 smart00316, S1, Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.001
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 231 QEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID----VKPGLLLQGVVRS 286
+ G V+ V I G + G G +P + L++ D +K G ++ V S
Sbjct: 1 EVGDVVEGTVTEITPGGAFVDLG-NGVEGLIPISELSDKRVKDPEEVLKVGDEVKVKVLS 59
Query: 287 IDRTRKVVYLS 297
+D + + LS
Sbjct: 60 VDEEKGRIILS 70
|
Length = 72 |
| >gnl|CDD|224106 COG1185, Pnp, Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 0.001
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
+V+ G V +G V+ + FGA V+ G L + +++ + K K G E+ +V
Sbjct: 615 REVEVGEVYEGTVVRIVDFGAFVELLPGKDGLVHISQLAKERVEKVEDVLKEGDEVKVKV 674
Query: 554 LGVKSK-RITVTHKKTL 569
+ + + RI ++ K L
Sbjct: 675 IEIDKQGRIRLSIKAVL 691
|
Length = 692 |
| >gnl|CDD|240202 cd05697, S1_Rrp5_repeat_hs5, S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.001
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
G I K+ G FV+ + ++G P L P + G VKCR++S P +R+
Sbjct: 6 GTIRKLRPSGIFVKLSDHIKGLVPPMHLADVRLKHPEKKFKPGLKVKCRVLSVEPERKRL 65
Query: 651 NL 652
L
Sbjct: 66 VL 67
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 5 (hs5) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 69 |
| >gnl|CDD|105491 PRK12269, PRK12269, bifunctional cytidylate kinase/ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (101), Expect = 0.001
Identities = 64/280 (22%), Positives = 111/280 (39%), Gaps = 42/280 (15%)
Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
+H D V G + S G + +G G +H ++ V+ P +GQ ++ KV
Sbjct: 491 VHIEDSVSGVVKSFTSF--GAFIDLG-GFDGLLHVNDMSWGHVARPREFVKKGQTIELKV 547
Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
+ + + + + LSL+ P LE N +V+G V
Sbjct: 548 IRLDQAEK---RINLSLKHF-----------------QPDPWLEFENKFGVNDVVKGRVT 587
Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435
+ G FI L+ ++ +S S P IG V +L + + RV +
Sbjct: 588 KIADFGAFIELAEGIEGLAHISEFSWVKKTSKPSDMVKIGDEVECMILGYDIQAGRVSLG 647
Query: 1436 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS--- 1492
LK + + E + VG +I +V + G FI +E + G HV +LS
Sbjct: 648 LKQVTANPWEEIE----ARYPVGARFTRRIVKVTNAGAFIEMEE-GIDGFLHVDDLSWVK 702
Query: 1493 ----EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
DH + G++++ +++ D + RRI LG+K
Sbjct: 703 RTRPADHELEV------GKEIECMVIECDPQARRIRLGVK 736
|
Length = 863 |
| >gnl|CDD|218774 pfam05843, Suf, Suppressor of forked protein (Suf) | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.001
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 1858 YLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGE 1904
YLD I L D R LFE ++ P ++K L+KK+++YE G+
Sbjct: 76 YLDYLISLNDDTNARVLFETVVTKLTPEPELKPLWKKFIKYESKFGD 122
|
This family consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster Suppressor of forked [Su(f)] protein shares homology with the yeast RNA14 protein and the 77-kDa subunit of human cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and an important role of the GU-rich sequence for this regulation to occur. Length = 271 |
| >gnl|CDD|235233 PRK04163, PRK04163, exosome complex RNA-binding protein Rrp4; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD----NIETIYRAGEKVKVK 1512
VGD+VIG++ V G + I N+ VSE+ V+ ++ G+ + K
Sbjct: 63 VGDLVIGKVTDVTFSGWEVDI-NSPYKAYLPVSEVLGRPVNVEGTDLRKYLDIGDYIIAK 121
Query: 1513 ILKVDKEKRRISLGMK 1528
+ VD R + L +K
Sbjct: 122 VKDVD-RTRDVVLTLK 136
|
Length = 235 |
| >gnl|CDD|235851 PRK06676, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.002
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 14/130 (10%)
Query: 440 VTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKA---SAFEGLVFTHSDV 496
V IS+++ E V K + G V V++L + LK +EG+ +
Sbjct: 219 VHISELSHERVEKPSEVVSVGQEVEVKVLSIDWETERISLSLKDTLPGPWEGV---EEKL 275
Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF---EIVKPGKKFKVGAELVFRV 553
G V++G V + FGA V+ GV+ L H+S+ I P + + G E+ +V
Sbjct: 276 PEGDVIEGTVKRLTDFGAFVEVLPGVEGLV---HISQISHKHIATPSEVLEEGQEVKVKV 332
Query: 554 LGV--KSKRI 561
L V + KRI
Sbjct: 333 LEVNEEEKRI 342
|
Length = 390 |
| >gnl|CDD|224023 COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
S + G + I G FV G TG S+ DG D+ VGQ V+ +LD++ E
Sbjct: 7 SKLKGKITGITPYGAFVELEGGKTGLVHISEIADGFVKDIHDHLKVGQEVKVKVLDID-E 65
Query: 823 TGRITLSLKQ 832
G+I+LS+++
Sbjct: 66 NGKISLSIRK 75
|
Length = 129 |
| >gnl|CDD|240212 cd05707, S1_Rrp5_repeat_sc11, S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.003
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
G++ I +G FV GV SEL + + VGQ+VK +I+S P + RI
Sbjct: 6 GFVKNIANNGVFVTLGRGVDARVRVSELSDSYLKDWKKRFKVGQLVKGKIVSIDPDNGRI 65
Query: 651 NLS 653
++
Sbjct: 66 EMT 68
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 68 |
| >gnl|CDD|240211 cd05706, S1_Rrp5_repeat_sc10, S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.003
Identities = 18/73 (24%), Positives = 35/73 (47%)
Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
L I+ G V V + + L K+ +++ D Y E+ +F +V VLS
Sbjct: 1 LKVGDILPGRVTKVNDRYVLVQLGNKVTGPSFITDALDDYSEALPYKFKKNDIVRACVLS 60
Query: 1425 VEPLSKRVEVTLK 1437
V+ +K++ ++L+
Sbjct: 61 VDVPNKKIALSLR 73
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 73 |
| >gnl|CDD|240211 cd05706, S1_Rrp5_repeat_sc10, S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.003
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 14/87 (16%)
Query: 131 ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVG 190
+ G L G V +VN++ +++ L + G + DALD + LP F
Sbjct: 1 LKVGDILPGRVTKVNDRYVLVQLGNKVTGPSFITDALD---------DYSEALPYKFKKN 51
Query: 191 QLVSCIVLQLDDDKKEIGKRKIWLSLR 217
+V VL +D K KI LSLR
Sbjct: 52 DIVRACVLSVDVPNK-----KIALSLR 73
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 73 |
| >gnl|CDD|240211 cd05706, S1_Rrp5_repeat_sc10, S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.003
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
+ +G + G V KV++ + L+ + + FI D+ + SE ++ F V V
Sbjct: 1 LKVGDILPGRVTKVNDRYVLVQLGNKVTGPSFITDALDDYSEALPYK--FKKNDIVRACV 58
Query: 1221 LSINKEKKLLRLVLR 1235
LS++ K + L LR
Sbjct: 59 LSVDVPNKKIALSLR 73
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 73 |
| >gnl|CDD|239908 cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.004
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 226 SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVR 285
+ ++ GMV+ YV++I +G + F L TG P++ +++ D G V
Sbjct: 8 NFSDLKPGMVVHGYVRNITPYGVFVEF-LGGLTGLAPKSYISDEFVTDPSFGFKKGQSVT 66
Query: 286 ----SIDRTRKVVYLS 297
S+D ++ LS
Sbjct: 67 AKVTSVDEEKQRFLLS 82
|
Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea. Length = 83 |
| >gnl|CDD|235851 PRK06676, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.004
Identities = 88/392 (22%), Positives = 154/392 (39%), Gaps = 60/392 (15%)
Query: 591 GWITKIEKHGCFVRFYN-GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
G + K+E FV V+G P SEL D + + + VG ++ ++
Sbjct: 23 GEVLKVEDKQVFVNIEGYKVEGVIPISELSNDHIEDINDVVKVGDELEVYVLKVEDGEGN 82
Query: 650 INLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 706
+ LS + D L + G +V V V +VV V +G IP ++
Sbjct: 83 LLLSKRRLEAEKAWDKLEEKFEEGEVVEVKVTEVVKGGLVVDV---EGVRGFIPASLIST 139
Query: 707 H-LEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPN 762
+E + K G + ++ LD E + ++LS + +++ + + S +
Sbjct: 140 RFVEDFSDFK-----GKTLEVKIIELDPEKNRVILSRR-AVVEEERAAKKEELLSSLKEG 193
Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
VV G V + + G FV +G + G S+ + S+ VGQ V +L ++ E
Sbjct: 194 DVVEGTVARLTDFGAFVD-IGGVDGLVHISELSHERVEKPSEVVSVGQEVEVKVLSIDWE 252
Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
T RI+LSLK + + +EEK+ G VIEG V
Sbjct: 253 TERISLSLKDTLPGPWE--------GVEEKLP-------------------EGDVIEGTV 285
Query: 883 HESNDFGVVVSFEEHSDVYGFITHHQLAGATV-------ESGSVIQAAILDVAKAERLVD 935
DFG V E V G + Q++ + E G ++ +L+V + E+ +
Sbjct: 286 KRLTDFGAFV--EVLPGVEGLVHISQISHKHIATPSEVLEEGQEVKVKVLEVNEEEKRIS 343
Query: 936 LSLKTVFIDRFREANSNRQAQKKKRKREASKD 967
LS+K + E + +++ R+
Sbjct: 344 LSIKAL------EEAPAEEEDRREEYRQYELP 369
|
Length = 390 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1924 | |||
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 100.0 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 100.0 | |
| COG0539 | 541 | RpsA Ribosomal protein S1 [Translation, ribosomal | 100.0 | |
| COG0539 | 541 | RpsA Ribosomal protein S1 [Translation, ribosomal | 100.0 | |
| PRK12269 | 863 | bifunctional cytidylate kinase/ribosomal protein S | 100.0 | |
| PRK06299 | 565 | rpsA 30S ribosomal protein S1; Reviewed | 100.0 | |
| TIGR00717 | 516 | rpsA ribosomal protein S1. This model provides tru | 100.0 | |
| PRK12269 | 863 | bifunctional cytidylate kinase/ribosomal protein S | 100.0 | |
| PRK06299 | 565 | rpsA 30S ribosomal protein S1; Reviewed | 100.0 | |
| TIGR00717 | 516 | rpsA ribosomal protein S1. This model provides tru | 100.0 | |
| PRK13806 | 491 | rpsA 30S ribosomal protein S1; Provisional | 100.0 | |
| PRK13806 | 491 | rpsA 30S ribosomal protein S1; Provisional | 100.0 | |
| PRK07899 | 486 | rpsA 30S ribosomal protein S1; Reviewed | 100.0 | |
| PRK07899 | 486 | rpsA 30S ribosomal protein S1; Reviewed | 100.0 | |
| PRK06676 | 390 | rpsA 30S ribosomal protein S1; Reviewed | 100.0 | |
| PRK06676 | 390 | rpsA 30S ribosomal protein S1; Reviewed | 100.0 | |
| PRK00087 | 647 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | 100.0 | |
| PRK00087 | 647 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | 100.0 | |
| PRK07400 | 318 | 30S ribosomal protein S1; Reviewed | 100.0 | |
| PRK07400 | 318 | 30S ribosomal protein S1; Reviewed | 99.97 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.91 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.91 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.85 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.82 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.73 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.69 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.64 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.63 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.63 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.62 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.62 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.61 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.61 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 99.59 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.57 | |
| PTZ00248 | 319 | eukaryotic translation initiation factor 2 subunit | 99.57 | |
| COG2996 | 287 | Predicted RNA-bindining protein (contains S1 and H | 99.55 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.55 | |
| COG1098 | 129 | VacB Predicted RNA binding protein (contains ribos | 99.55 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.54 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.53 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.53 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.51 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.49 | |
| COG2996 | 287 | Predicted RNA-bindining protein (contains S1 and H | 99.49 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.47 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.46 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.45 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.44 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.42 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.42 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 99.41 | |
| cd05693 | 100 | S1_Rrp5_repeat_hs1_sc1 S1_Rrp5_repeat_hs1_sc1: Rrp | 99.41 | |
| cd05705 | 74 | S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a | 99.4 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.4 | |
| COG1098 | 129 | VacB Predicted RNA binding protein (contains ribos | 99.39 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.38 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.38 | |
| cd05705 | 74 | S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a | 99.38 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.37 | |
| cd05694 | 74 | S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp | 99.37 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.36 | |
| cd05703 | 73 | S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: R | 99.34 | |
| cd05694 | 74 | S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp | 99.34 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.34 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.34 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 99.33 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.33 | |
| PTZ00248 | 319 | eukaryotic translation initiation factor 2 subunit | 99.32 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.31 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.31 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.31 | |
| cd05703 | 73 | S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: R | 99.29 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.28 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.28 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 99.28 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.26 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.26 | |
| cd04461 | 83 | S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp | 99.25 | |
| cd05704 | 72 | S1_Rrp5_repeat_hs13 S1_Rrp5_repeat_hs13: Rrp5 is a | 99.25 | |
| cd05686 | 73 | S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding dom | 99.25 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.25 | |
| PF00575 | 74 | S1: S1 RNA binding domain; InterPro: IPR003029 Rib | 99.23 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.23 | |
| cd05696 | 71 | S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a t | 99.22 | |
| cd05708 | 77 | S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a | 99.22 | |
| cd05706 | 73 | S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a | 99.22 | |
| cd05698 | 70 | S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp | 99.21 | |
| cd05698 | 70 | S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp | 99.2 | |
| PF00575 | 74 | S1: S1 RNA binding domain; InterPro: IPR003029 Rib | 99.2 | |
| cd05697 | 69 | S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a t | 99.19 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.18 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 99.18 | |
| cd04461 | 83 | S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp | 99.17 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.17 | |
| PRK08582 | 139 | hypothetical protein; Provisional | 99.17 | |
| cd05706 | 73 | S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a | 99.16 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.15 | |
| cd05704 | 72 | S1_Rrp5_repeat_hs13 S1_Rrp5_repeat_hs13: Rrp5 is a | 99.15 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 99.14 | |
| cd05707 | 68 | S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a | 99.14 | |
| cd04452 | 76 | S1_IF2_alpha S1_IF2_alpha: The alpha subunit of tr | 99.13 | |
| cd05693 | 100 | S1_Rrp5_repeat_hs1_sc1 S1_Rrp5_repeat_hs1_sc1: Rrp | 99.12 | |
| cd05707 | 68 | S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a | 99.12 | |
| cd05697 | 69 | S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a t | 99.11 | |
| PRK07252 | 120 | hypothetical protein; Provisional | 99.11 | |
| cd05690 | 69 | S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal p | 99.11 | |
| cd05696 | 71 | S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a t | 99.1 | |
| PRK08582 | 139 | hypothetical protein; Provisional | 99.1 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.09 | |
| cd05699 | 72 | S1_Rrp5_repeat_hs7 S1_Rrp5_repeat_hs7: Rrp5 is a t | 99.08 | |
| PRK05807 | 136 | hypothetical protein; Provisional | 99.07 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.07 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.06 | |
| cd05691 | 73 | S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal p | 99.06 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.05 | |
| cd05689 | 72 | S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal p | 99.05 | |
| PRK07252 | 120 | hypothetical protein; Provisional | 99.04 | |
| cd05695 | 66 | S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a t | 99.04 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.03 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.02 | |
| cd05708 | 77 | S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a | 99.01 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.0 | |
| cd05687 | 70 | S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Rib | 99.0 | |
| cd04452 | 76 | S1_IF2_alpha S1_IF2_alpha: The alpha subunit of tr | 99.0 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.99 | |
| cd05684 | 79 | S1_DHX8_helicase S1_DHX8_helicase: The N-terminal | 98.99 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 98.99 | |
| cd05690 | 69 | S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal p | 98.99 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.99 | |
| cd05695 | 66 | S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a t | 98.98 | |
| PRK08059 | 123 | general stress protein 13; Validated | 98.98 | |
| cd05691 | 73 | S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal p | 98.97 | |
| cd05692 | 69 | S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal p | 98.96 | |
| cd05686 | 73 | S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding dom | 98.95 | |
| PHA02945 | 88 | interferon resistance protein; Provisional | 98.95 | |
| cd05689 | 72 | S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal p | 98.94 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 98.94 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.93 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 98.93 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 98.93 | |
| cd05687 | 70 | S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Rib | 98.93 | |
| cd05685 | 68 | S1_Tex S1_Tex: The C-terminal S1 domain of a trans | 98.92 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.9 | |
| PRK08059 | 123 | general stress protein 13; Validated | 98.9 | |
| PRK05807 | 136 | hypothetical protein; Provisional | 98.9 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.86 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.85 | |
| cd04465 | 67 | S1_RPS1_repeat_ec2_hs2 S1_RPS1_repeat_ec2_hs2: Rib | 98.85 | |
| TIGR02696 | 719 | pppGpp_PNP guanosine pentaphosphate synthetase I/p | 98.85 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.84 | |
| cd04465 | 67 | S1_RPS1_repeat_ec2_hs2 S1_RPS1_repeat_ec2_hs2: Rib | 98.84 | |
| cd05789 | 86 | S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain. | 98.83 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.83 | |
| cd05692 | 69 | S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal p | 98.83 | |
| cd05688 | 68 | S1_RPS1_repeat_ec3 S1_RPS1_repeat_ec3: Ribosomal p | 98.83 | |
| COG1093 | 269 | SUI2 Translation initiation factor 2, alpha subuni | 98.82 | |
| cd05685 | 68 | S1_Tex S1_Tex: The C-terminal S1 domain of a trans | 98.81 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.81 | |
| cd04472 | 68 | S1_PNPase S1_PNPase: Polynucleotide phosphorylase | 98.81 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 98.81 | |
| cd04471 | 83 | S1_RNase_R S1_RNase_R: RNase R C-terminal S1 domai | 98.8 | |
| PLN00207 | 891 | polyribonucleotide nucleotidyltransferase; Provisi | 98.8 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.8 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.8 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.79 | |
| cd05684 | 79 | S1_DHX8_helicase S1_DHX8_helicase: The N-terminal | 98.77 | |
| PRK03987 | 262 | translation initiation factor IF-2 subunit alpha; | 98.77 | |
| smart00316 | 72 | S1 Ribosomal protein S1-like RNA-binding domain. | 98.76 | |
| cd04453 | 88 | S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-lik | 98.75 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 98.74 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.73 | |
| cd04472 | 68 | S1_PNPase S1_PNPase: Polynucleotide phosphorylase | 98.72 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.72 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.72 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.72 | |
| cd04473 | 77 | S1_RecJ_like S1_RecJ_like: The S1 domain of the ar | 98.72 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.71 | |
| smart00316 | 72 | S1 Ribosomal protein S1-like RNA-binding domain. | 98.71 | |
| COG2183 | 780 | Tex Transcriptional accessory protein [Transcripti | 98.7 | |
| PHA02945 | 88 | interferon resistance protein; Provisional | 98.7 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.69 | |
| cd05688 | 68 | S1_RPS1_repeat_ec3 S1_RPS1_repeat_ec3: Ribosomal p | 98.67 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.67 | |
| COG2183 | 780 | Tex Transcriptional accessory protein [Transcripti | 98.66 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.66 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.65 | |
| PRK09521 | 189 | exosome complex RNA-binding protein Csl4; Provisio | 98.65 | |
| cd05702 | 70 | S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: R | 98.65 | |
| cd05789 | 86 | S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain. | 98.65 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.64 | |
| PLN00207 | 891 | polyribonucleotide nucleotidyltransferase; Provisi | 98.64 | |
| cd04454 | 82 | S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA- | 98.64 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.63 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.63 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.62 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.6 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.59 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.59 | |
| PRK11824 | 693 | polynucleotide phosphorylase/polyadenylase; Provis | 98.59 | |
| COG1185 | 692 | Pnp Polyribonucleotide nucleotidyltransferase (pol | 98.58 | |
| cd04453 | 88 | S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-lik | 98.56 | |
| cd04471 | 83 | S1_RNase_R S1_RNase_R: RNase R C-terminal S1 domai | 98.56 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.56 | |
| COG1093 | 269 | SUI2 Translation initiation factor 2, alpha subuni | 98.55 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 98.54 | |
| cd05702 | 70 | S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: R | 98.54 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.53 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 98.53 | |
| PRK03987 | 262 | translation initiation factor IF-2 subunit alpha; | 98.52 | |
| cd04454 | 82 | S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA- | 98.52 | |
| cd04473 | 77 | S1_RecJ_like S1_RecJ_like: The S1 domain of the ar | 98.52 | |
| cd00164 | 65 | S1_like S1_like: Ribosomal protein S1-like RNA-bin | 98.5 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.49 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.47 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.47 | |
| TIGR02696 | 719 | pppGpp_PNP guanosine pentaphosphate synthetase I/p | 98.47 | |
| cd04460 | 99 | S1_RpoE S1_RpoE: RpoE, S1-like RNA-binding domain. | 98.45 | |
| cd00164 | 65 | S1_like S1_like: Ribosomal protein S1-like RNA-bin | 98.45 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.4 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.39 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 98.38 | |
| TIGR03591 | 684 | polynuc_phos polyribonucleotide nucleotidyltransfe | 98.36 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.36 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.35 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.33 | |
| PRK11824 | 693 | polynucleotide phosphorylase/polyadenylase; Provis | 98.32 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.3 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.3 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 98.3 | |
| PRK09521 | 189 | exosome complex RNA-binding protein Csl4; Provisio | 98.3 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.26 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.25 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.23 | |
| cd05699 | 72 | S1_Rrp5_repeat_hs7 S1_Rrp5_repeat_hs7: Rrp5 is a t | 98.21 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.2 | |
| PRK04163 | 235 | exosome complex RNA-binding protein Rrp4; Provisio | 98.17 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.17 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.16 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.15 | |
| cd04460 | 99 | S1_RpoE S1_RpoE: RpoE, S1-like RNA-binding domain. | 98.15 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.13 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.12 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.11 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.1 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.08 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.08 | |
| TIGR00448 | 179 | rpoE DNA-directed RNA polymerase (rpoE), archaeal | 98.07 | |
| TIGR03591 | 684 | polynuc_phos polyribonucleotide nucleotidyltransfe | 98.07 | |
| cd04455 | 67 | S1_NusA S1_NusA: N-utilizing substance A protein ( | 98.06 | |
| cd04455 | 67 | S1_NusA S1_NusA: N-utilizing substance A protein ( | 98.06 | |
| PRK04163 | 235 | exosome complex RNA-binding protein Rrp4; Provisio | 98.06 | |
| PRK09202 | 470 | nusA transcription elongation factor NusA; Validat | 98.05 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.04 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.04 | |
| TIGR02063 | 709 | RNase_R ribonuclease R. This family consists of an | 98.03 | |
| COG1095 | 183 | RPB7 DNA-directed RNA polymerase, subunit E' [Tran | 98.03 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 98.03 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.01 | |
| PRK09202 | 470 | nusA transcription elongation factor NusA; Validat | 98.01 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.0 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.99 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.99 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.95 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.95 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 97.94 | |
| PRK11642 | 813 | exoribonuclease R; Provisional | 97.93 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 97.92 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.9 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 97.89 | |
| cd05791 | 92 | S1_CSL4 S1_CSL4: CSL4, S1-like RNA-binding domain. | 97.87 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.86 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.83 | |
| TIGR00358 | 654 | 3_prime_RNase VacB and RNase II family 3'-5' exori | 97.83 | |
| COG1185 | 692 | Pnp Polyribonucleotide nucleotidyltransferase (pol | 97.81 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.81 | |
| TIGR01953 | 341 | NusA transcription termination factor NusA. This m | 97.76 | |
| cd05701 | 69 | S1_Rrp5_repeat_hs10 S1_Rrp5_repeat_hs10: Rrp5 is a | 97.76 | |
| TIGR00448 | 179 | rpoE DNA-directed RNA polymerase (rpoE), archaeal | 97.75 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 97.74 | |
| PRK08563 | 187 | DNA-directed RNA polymerase subunit E'; Provisiona | 97.74 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.73 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.73 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.73 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.72 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.72 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.72 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 97.7 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.7 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.7 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.69 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.68 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.68 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 97.67 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.65 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.64 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.63 | |
| cd05700 | 65 | S1_Rrp5_repeat_hs9 S1_Rrp5_repeat_hs9: Rrp5 is a t | 97.63 | |
| KOG1067 | 760 | consensus Predicted RNA-binding polyribonucleotide | 97.62 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.62 | |
| cd05791 | 92 | S1_CSL4 S1_CSL4: CSL4, S1-like RNA-binding domain. | 97.61 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.6 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.59 | |
| TIGR02063 | 709 | RNase_R ribonuclease R. This family consists of an | 97.58 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.57 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.57 | |
| KOG1067 | 760 | consensus Predicted RNA-binding polyribonucleotide | 97.56 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 97.56 | |
| TIGR01953 | 341 | NusA transcription termination factor NusA. This m | 97.55 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.54 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.53 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.53 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.5 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.49 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.49 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.47 | |
| COG1095 | 183 | RPB7 DNA-directed RNA polymerase, subunit E' [Tran | 97.47 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.47 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.46 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.45 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.45 | |
| PRK12327 | 362 | nusA transcription elongation factor NusA; Provisi | 97.44 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.42 | |
| PRK11642 | 813 | exoribonuclease R; Provisional | 97.37 | |
| PHA02858 | 86 | EIF2a-like PKR inhibitor; Provisional | 97.37 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.37 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 97.36 | |
| TIGR00358 | 654 | 3_prime_RNase VacB and RNase II family 3'-5' exori | 97.35 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.35 | |
| PRK08563 | 187 | DNA-directed RNA polymerase subunit E'; Provisiona | 97.34 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.34 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.3 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.28 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.26 | |
| PF08311 | 126 | Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro | 97.24 | |
| cd04462 | 88 | S1_RNAPII_Rpb7 S1_RNAPII_Rpb7: Eukaryotic RNA poly | 97.2 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 97.15 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 97.1 | |
| PRK12327 | 362 | nusA transcription elongation factor NusA; Provisi | 97.1 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.08 | |
| PRK05054 | 644 | exoribonuclease II; Provisional | 97.04 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.01 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.98 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.98 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.97 | |
| PHA02858 | 86 | EIF2a-like PKR inhibitor; Provisional | 96.93 | |
| PF08311 | 126 | Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro | 96.93 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 96.92 | |
| COG1096 | 188 | Predicted RNA-binding protein (consists of S1 doma | 96.88 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.85 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.84 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.81 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.8 | |
| PF10447 | 82 | EXOSC1: Exosome component EXOSC1/CSL4; InterPro: I | 96.79 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.79 | |
| cd04462 | 88 | S1_RNAPII_Rpb7 S1_RNAPII_Rpb7: Eukaryotic RNA poly | 96.66 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.63 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 96.62 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.6 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.57 | |
| COG1107 | 715 | Archaea-specific RecJ-like exonuclease, contains D | 96.53 | |
| PTZ00162 | 176 | DNA-directed RNA polymerase II subunit 7; Provisio | 96.51 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.48 | |
| KOG2916 | 304 | consensus Translation initiation factor 2, alpha s | 96.46 | |
| COG1107 | 715 | Archaea-specific RecJ-like exonuclease, contains D | 96.4 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.37 | |
| PF13509 | 61 | S1_2: S1 domain; PDB: 3GO5_A. | 96.34 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.32 | |
| TIGR02062 | 639 | RNase_B exoribonuclease II. This family consists o | 96.31 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.28 | |
| COG1097 | 239 | RRP4 RNA-binding protein Rrp4 and related proteins | 96.26 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.24 | |
| COG0557 | 706 | VacB Exoribonuclease R [Transcription] | 96.24 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.22 | |
| KOG1856 | 1299 | consensus Transcription elongation factor SPT6 [RN | 96.19 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.14 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.11 | |
| cd05790 | 86 | S1_Rrp40 S1_Rrp40: Rrp40 S1-like RNA-binding domai | 96.1 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.0 | |
| PF10447 | 82 | EXOSC1: Exosome component EXOSC1/CSL4; InterPro: I | 95.94 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 95.91 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.88 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 95.85 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.84 | |
| smart00777 | 125 | Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region | 95.83 | |
| TIGR00757 | 414 | RNaseEG ribonuclease, Rne/Rng family. The C-termin | 95.81 | |
| cd05790 | 86 | S1_Rrp40 S1_Rrp40: Rrp40 S1-like RNA-binding domai | 95.8 | |
| KOG2916 | 304 | consensus Translation initiation factor 2, alpha s | 95.78 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 95.77 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 95.73 | |
| PRK12328 | 374 | nusA transcription elongation factor NusA; Provisi | 95.71 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.69 | |
| PRK12328 | 374 | nusA transcription elongation factor NusA; Provisi | 95.64 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 95.57 | |
| COG1097 | 239 | RRP4 RNA-binding protein Rrp4 and related proteins | 95.55 | |
| PF13509 | 61 | S1_2: S1 domain; PDB: 3GO5_A. | 95.55 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.54 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 95.48 | |
| smart00777 | 125 | Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region | 95.46 | |
| KOG1856 | 1299 | consensus Transcription elongation factor SPT6 [RN | 95.45 | |
| TIGR00757 | 414 | RNaseEG ribonuclease, Rne/Rng family. The C-termin | 95.33 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.32 | |
| PRK05054 | 644 | exoribonuclease II; Provisional | 95.29 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 95.22 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 95.17 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.11 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.05 | |
| PTZ00162 | 176 | DNA-directed RNA polymerase II subunit 7; Provisio | 95.03 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.0 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.0 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 94.82 | |
| COG1096 | 188 | Predicted RNA-binding protein (consists of S1 doma | 94.81 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.8 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 94.72 | |
| PRK12329 | 449 | nusA transcription elongation factor NusA; Provisi | 94.69 | |
| PF02184 | 32 | HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 | 94.6 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.47 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.38 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.27 | |
| TIGR02062 | 639 | RNase_B exoribonuclease II. This family consists o | 94.25 | |
| PRK12329 | 449 | nusA transcription elongation factor NusA; Provisi | 94.23 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.08 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 94.02 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 93.98 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.95 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.87 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 93.87 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.86 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.72 | |
| COG0557 | 706 | VacB Exoribonuclease R [Transcription] | 93.71 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 93.67 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.62 | |
| PF02184 | 32 | HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 | 93.57 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.25 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.05 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 92.88 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 92.8 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 92.75 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 91.71 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 91.3 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 91.2 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 91.0 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 90.94 | |
| PRK10811 | 1068 | rne ribonuclease E; Reviewed | 90.85 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 90.79 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 90.6 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 90.55 | |
| PRK10811 | 1068 | rne ribonuclease E; Reviewed | 90.36 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 89.97 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 89.96 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.96 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 89.84 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 89.78 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 89.45 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 88.97 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 88.92 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 88.78 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 88.59 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 88.58 | |
| KOG3409 | 193 | consensus Exosomal 3'-5' exoribonuclease complex, | 88.42 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 87.64 | |
| PRK11712 | 489 | ribonuclease G; Provisional | 87.54 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.34 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 86.5 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 86.42 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 86.27 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 86.23 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 86.12 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 85.9 | |
| PF10246 | 104 | MRP-S35: Mitochondrial ribosomal protein MRP-S35; | 85.76 | |
| PRK11712 | 489 | ribonuclease G; Provisional | 85.68 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 85.67 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 85.5 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 85.49 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 85.42 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 84.94 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 84.93 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 84.9 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 84.84 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 84.82 | |
| KOG3409 | 193 | consensus Exosomal 3'-5' exoribonuclease complex, | 84.8 | |
| PF08292 | 122 | RNA_pol_Rbc25: RNA polymerase III subunit Rpc25; I | 84.7 | |
| KOG3298 | 170 | consensus DNA-directed RNA polymerase subunit E' [ | 84.25 | |
| PF08292 | 122 | RNA_pol_Rbc25: RNA polymerase III subunit Rpc25; I | 84.21 | |
| PRK12442 | 87 | translation initiation factor IF-1; Reviewed | 83.34 | |
| KOG0687 | 393 | consensus 26S proteasome regulatory complex, subun | 82.34 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 82.32 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 82.28 | |
| KOG3298 | 170 | consensus DNA-directed RNA polymerase subunit E' [ | 82.26 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 82.07 | |
| KOG0687 | 393 | consensus 26S proteasome regulatory complex, subun | 81.61 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 81.45 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 81.17 | |
| PF10246 | 104 | MRP-S35: Mitochondrial ribosomal protein MRP-S35; | 81.17 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 81.15 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 81.02 | |
| COG5187 | 412 | RPN7 26S proteasome regulatory complex component, | 80.87 | |
| TIGR00008 | 68 | infA translation initiation factor IF-1. This fami | 80.64 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 80.11 |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-200 Score=1857.82 Aligned_cols=1649 Identities=37% Similarity=0.554 Sum_probs=1329.0
Q ss_pred CCCCCcccchhccccccccCccccccccCCCCCCCCCcCCCCCCCCCCchhhhhhh--hccccccccccccc-----ccc
Q 000176 16 GPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRERDEIH--AEVDAEFEAVERGL-----HKK 88 (1924)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~fpRGg~~~lt~~e~~~~~--~~~d~lf~~~~~~~-----~k~ 88 (1924)
+++..+++.+|+++ ....+.++...+..++.+++|||||+|.|||+|+++.. +..|.+|+....+. .++
T Consensus 4 ~~k~~~d~~~p~sk----edS~~~~s~~~l~~~t~~~~fprgg~s~lt~~e~~kv~~E~~~e~l~~~~~vke~~~~~~~~ 79 (1710)
T KOG1070|consen 4 STKRKRDNPKPLSK----EDSTKVGSKSSLKRKTAAPDFPRGGASKLTPLEIEKVEEEAFIEGLTGFGVVKEVFDDGRPK 79 (1710)
T ss_pred cccCCCCCCCCCcc----cccccccccccccccccccccccccccccChHHHHHHHHHHHhhhhhcccceecccCCCCcc
Confidence 33444556666763 33333333344577788999999999999999999994 44555665332110 111
Q ss_pred cccccccccccccccccccCCccCCCcCCCCCceeeccccCCcCcccEEEEEEEEEecccEEEEcCCCcEEEEeccccCc
Q 000176 89 NKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168 (1924)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~k~l~~G~~~lg~V~~i~~~~l~vslp~~l~g~v~~~~is~ 168 (1924)
++..++...+-... . .+..++.+ +..+++++|++++|||++||+|++|+..|+.+|+|++|+|||+.|+||+
T Consensus 80 ~k~vk~~~s~~s~~--~---~~~~~~~k---~~~~~~~~~k~isPG~~llgvIs~i~~~Dl~isv~~~l~g~v~~t~lS~ 151 (1710)
T KOG1070|consen 80 KKTVKKSASKVSKK--F---TENFNEEK---PEIINAFQLKNISPGMLLLGVISKINGNDLKISVKGGLNGYVLNTHLSD 151 (1710)
T ss_pred ccccccchhhHHHh--h---hccccccc---hhhhhhccccccCCcceeeeeeeeccccceeEEccCcccccccccccCH
Confidence 11111111110000 0 00111111 5568999999999999999999999999999999999999999999998
Q ss_pred hhhccccccccCCCCCCcccCCCEEEEEEEEeecCccccceeEEEEEechhhhccCCCcccccCCcEEEEEEeeeeceeE
Q 000176 169 PILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 248 (1924)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~f~~Gq~v~~~V~~~~~~~~~~~~~~i~LSl~p~~vn~~l~~~~l~~g~~l~~~V~svedhG~ 248 (1924)
.+ +.+||.|.++|.|+||||+
T Consensus 152 ~~-----------------------------------------------------------~~~~~~l~~~v~S~ed~g~ 172 (1710)
T KOG1070|consen 152 EM-----------------------------------------------------------LAAGEVLDTAVVSIEDHGA 172 (1710)
T ss_pred hH-----------------------------------------------------------hhhhhhhcccccccccccc
Confidence 73 2358899999999999999
Q ss_pred EEEecCCcceeeccCCCCCCCCCCccCCCcEEEEEEEEEcCCCcEEEEccCccccccccccCcccccccccCCCceEEEE
Q 000176 249 ILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTR 328 (1924)
Q Consensus 249 ild~Gi~~~~gFl~~~~~~~~~~~~l~~G~~~~~~v~~~~~~~~~v~ls~~~~~~~~~~~~~~~~~~~~~l~pG~~v~~~ 328 (1924)
++|+|++..+||+.+.++++. +..|++||++.|+|++++. +.+++|..+..+.+..++..++++++.|+|||+|+|.
T Consensus 173 ~l~~g~~~~~~~~e~~q~pn~-~~~lKvGq~l~~~V~k~~s--~~v~ks~~~~~~~t~~~t~~~~~~~~~LvpGt~vqa~ 249 (1710)
T KOG1070|consen 173 ILDVGLDEITGFIEKSQFPNL-GAKLKVGQWLRVSVTKSTS--ERVVKSTKFVEVLTLNPTSCNGLALNDLVPGTMVQAE 249 (1710)
T ss_pred chhcCCccccchhhhccCchh-hhhcccCceEEEEEEeccC--ceEEecccceeeecccchhccccchhhcCCcceEEEE
Confidence 999999999999999887632 3479999999999999886 4888999888888888888899999999999999999
Q ss_pred EEEEecCeEEEEecCceEEEEeccccCCCCCCCCccccCCCCCEEEEEEEEEeCCCceEEEeeCccccccCCCCCCCCCC
Q 000176 329 VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVG 408 (1924)
Q Consensus 329 V~~v~~~Gl~v~~~~~~~g~v~~~hl~~~~~~~~~~~~~~~G~~v~arVl~~~~~~k~v~lSl~p~~~~~~~~~~~~~~G 408 (1924)
|++|++||+.++|+++|+|+++..||.+++ .|..||...|.|+ ++..| ...+
T Consensus 250 V~sv~~~Gi~~dil~~ftG~l~~~hl~~~~-------~~~~~~~~l~~vi--~~s~R-------------------v~~~ 301 (1710)
T KOG1070|consen 250 VQSVEDHGITLDILNGFTGFLDKKHLPPFL-------RYFENQEKLGKVI--HKSDR-------------------VFVV 301 (1710)
T ss_pred ecceecCcEEEEecccccceeehhhCCchh-------hccccHHHhhccc--chhhh-------------------eeee
Confidence 999999999999999999999999998764 4888998888863 22222 2224
Q ss_pred CeEEeeEEEEEeCCceEEEEcCCCCCccceEEeccchhhHHHHhhhhcccCCCEEEEEEEEEeecCCeEEEEeecccccc
Q 000176 409 DIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 488 (1924)
Q Consensus 409 ~iv~~~~V~~~~~~~G~~v~~~~~~~~~~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~~~d~~~~~s~k~~~~~~ 488 (1924)
+.++.+....+... |+..-++.. .+. +-. ...++.|..|+|||+++..+|.+...+++.+.++.
T Consensus 302 ~f~~ka~ki~~l~~-~v~ai~p~~-----------~~~---~~~-~e~~k~G~~~K~~vi~~~~~~~~~~~tl~~s~ie~ 365 (1710)
T KOG1070|consen 302 DFFDKASKILVLKA-GVDAIAPSR-----------IEK---VLS-FEIFKIGNKVKCRVIDVLQMDSLALFTLKESAIEG 365 (1710)
T ss_pred chhhccceEEEecC-ccceEccCC-----------ccc---ccc-hhhcccCceEEEEEEEEeeccceEEeecchhhccC
Confidence 44444444444443 444444321 111 011 12599999999999999999999999999999999
Q ss_pred cccccccCCCCCeEEEEEEEEecCceEEEeCCCeEEeecCCCcccccccCCCCCCCCCCEEEEEEEEEeCCeEEEEEccc
Q 000176 489 LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKT 568 (1924)
Q Consensus 489 ~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hlsd~~~~~p~~~f~vG~~vk~rVl~v~~~~l~lT~K~~ 568 (1924)
+++++.++.||.++.+.+ ++.++ ..|++|..|++++...+|+.+|..|..|.||||.+..+++.+|+| .
T Consensus 366 k~~~~s~V~~r~l~~~~~-svdt~---------~~~l~~L~hv~~f~~a~p~~~~~~~~di~~~vl~~~ak~~~vt~~-v 434 (1710)
T KOG1070|consen 366 KFSLVSDVSPRGLLKKPV-SVDTE---------EVGLSPLPHVLGFEYADPSKKISDGKDIGFRVLTCKAKCGSVTLK-V 434 (1710)
T ss_pred ceEEEeccCCceEEEecc-cCChh---------hhhccccchhhceeecCCCcccccccceeeEEeeccceeeeeeee-e
Confidence 999999999999999998 76664 679999999999999999999999999999999999899999999 9
Q ss_pred cccchhhHhhhhcccCCCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCCCCCCCCCCCCCCCEEEEEEEEEcCCCC
Q 000176 569 LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648 (1924)
Q Consensus 569 Lv~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~~ 648 (1924)
|..+++|.++.|.++.+ .++|+|.++. .|++|+-+++.....+|-..|.+|+++.|++.. .
T Consensus 435 ~~~sK~pvis~y~~~~~--~t~~~l~~v~------------q~~v~~~e~~te~~~rv~~v~~v~~v~~v~~~~-----s 495 (1710)
T KOG1070|consen 435 LCVSKLPVISMYADAVK--LTHGMLSKVP------------QGMVPIYEVGTEVKSRVWQVFYVGKVVIVSVRE-----S 495 (1710)
T ss_pred eEeecCcceEEEeeccc--cCcchhhccc------------cCCCCceecCCcccCccceecccCcEEEEEEeh-----H
Confidence 99999999999998877 7888888776 788888777777666777777777777776652 2
Q ss_pred EEEEEEeeCCCCcccccccCCCCEEEEEEEEEccCcEEEEEEecCceeEEEeCCcCCCCccchhhhccccCCCCeEeeEE
Q 000176 649 RINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 728 (1924)
Q Consensus 649 ri~lS~k~~~~~~~~~~~~~~G~iv~g~V~~~~~~g~~V~l~~~~~~~g~i~~~~Lsd~~~~~~~~~~~~~~G~~i~~vl 728 (1924)
.+.+.+ ....++++|++|+|+|.+++++|+.|.+. .+++.|+||..||+|++.+.+....++..|.++ |||
T Consensus 496 vl~lk~-------~~~nDI~iG~~V~~~I~~vt~~Gv~v~v~-~~ni~g~lp~~hlsd~~~~~p~~~f~v~~~~k~-RVl 566 (1710)
T KOG1070|consen 496 VLGLKF-------LRVNDIEIGQLVPGVIRKVTPQGVEVLVT-FGNIKGVLPKEHLSDHPLQPPLRDFKVGSGVKL-RVL 566 (1710)
T ss_pred hhcccc-------cccccccccceeeeEEEEecCCcEEEEEe-cCceeeecChHhhhhcccccccceeeeccccEE-EEE
Confidence 333333 23456999999999999999999999996 367999999999999999999988888888888 899
Q ss_pred EeecCCCeEEEEecccccchhccCCCCcCccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCC
Q 000176 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV 808 (1924)
Q Consensus 729 ~id~~~~~i~ls~K~sl~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~ 808 (1924)
+++.+.+++.||+|++|++-..++|.+|+++++|+++.|+|+++.++||||+|+||++||+|.+++++.|+.+++++|.+
T Consensus 567 ~~~~~~~~v~l~~K~slv~~~~plp~d~~~~~pg~~~~G~l~~~~~~g~~V~F~g~lsGf~p~s~~sd~~v~~~~ehf~v 646 (1710)
T KOG1070|consen 567 SVNRDRNRVALTLKKSLVNTQLPLPSDFEQAIPGKITKGTLCAIKENGAFVTFTGGLSGFAPVSEMSDDFVLSDSEHFPV 646 (1710)
T ss_pred EEEccCCeeEEEechhhhcccCCCccchhhcCCCceEEEEEeeeccCCeEEEecCccccccchhhhhhhhhcChhhhccc
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEEEeeCCCCeEEEeecccccCCCchhhHHHHHHHHHHHHHhhcccCCCccccccccccCccEEEEEEEEEecc
Q 000176 809 GQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDF 888 (1924)
Q Consensus 809 Gq~V~~~V~~id~~~~r~~lSlk~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~v~g~V~~i~~~ 888 (1924)
||||.|+|+++|++++||.|+++.+.|+.++..+..+| +..|.+..+.+.+++.+
T Consensus 647 GqTv~~~i~nvd~ek~rm~l~~r~s~~~~a~~~~~~e~-------------------------~~~g~v~s~~~~~~tkd 701 (1710)
T KOG1070|consen 647 GQTVRAKIVNVDDEKRRMPLGLRASSCARACVKRSVEN-------------------------FVKGGVKSLKSIDKTKD 701 (1710)
T ss_pred ccEEEEEEEecCchhceeehhhhhhhhHHHHHHHHHHH-------------------------hhccccccceeehhccc
Confidence 99999999999999999999999998865444333333 33455555566666666
Q ss_pred eeEEEeccCCceeEEEeeeecCCc-------------------ccccCCeEEEEEEEeeccccEEEEeechhhhhhhhhc
Q 000176 889 GVVVSFEEHSDVYGFITHHQLAGA-------------------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 949 (1924)
Q Consensus 889 g~~v~l~~~~~v~g~i~~~~l~~~-------------------~~~~G~~v~~~Vl~vd~~~~~v~ls~k~~l~~~~~~~ 949 (1924)
.++|.+.+. +++|++...||.|+ -+.+|+.+.++|+.++..++.|.+++++.|...+
T Consensus 702 ~viVei~~~-~~~~v~~~~~L~dg~v~~~~~~~~kl~~~t~~~~lv~gq~~~~~i~~isl~k~lv~~s~~~~L~~~~--- 777 (1710)
T KOG1070|consen 702 SVIVEIVDQ-GITGVGVFGELVDGSVVVNKVLENKLRKNTSLLHLVVGQVTVGVILSISLKKSLVLISLCTDLPNNA--- 777 (1710)
T ss_pred cEEEEccCc-ceEEEEEEEEEccCceEEccchhhhhhhcchhheeeecceeEEEEEEeehhhhhhhccccccccchH---
Confidence 666666654 56777777777652 2688999999999999999999999998887653
Q ss_pred chhhHHhHhhhhhccccccCCCcEEEEEEEEEeeeEEEEEecCCcceEEEEeeecCC-CCCCCcccccCCCeEEEEEecc
Q 000176 950 NSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMAL 1028 (1924)
Q Consensus 950 ~~~~~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~~v~vsl~~~~~~~g~~~~~~~~-~~~~~~~~f~~Gq~v~~~V~~~ 1028 (1924)
.+|..|....|+|++|..++.|++|. ++++++++.+|.+ ....+......||++.+.+..+
T Consensus 778 ----------------~~l~k~~~~~~~v~~is~~~~~~a~~--~~~i~~v~~s~~v~s~~~d~~~~~y~Q~v~~~~~st 839 (1710)
T KOG1070|consen 778 ----------------TKLLKGSYALALVRSISKEGKFVAFV--SNLIALVKVSHLVDSELDDLTKAEYGQSVTVKLLST 839 (1710)
T ss_pred ----------------HHHhcCchhHHHHHhhhhheeheeec--ccccceeeccccccccccccceeeeecccceEEEec
Confidence 24777888899999999999999995 5599999999986 5555677777889999999987
Q ss_pred CCCCccchhhhhhhh------------cc-ccccccccccccCCCCCCCCeEEEEEEEEeCCeEEEEeCCCeeEEEEccc
Q 000176 1029 PSSSTAGRLLLLLKA------------IS-ETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITE 1095 (1924)
Q Consensus 1029 ~~~~~~~~~~l~~~~------------~~-~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~l~V~l~~~~~G~i~~~e 1095 (1924)
+ +...+. ++.... .+ ..+-....+.+..+++.+|.++.|+|++|+++||+|.++.+.+||||++|
T Consensus 840 ~-~~~~~~-~~a~e~p~~K~~~~~~~~~~~~~d~~Vd~a~k~~~~~~igsiv~a~v~svKp~~L~v~l~~~~~gri~ise 917 (1710)
T KOG1070|consen 840 E-PKVVKD-LKAVEKPKKKKEKKFIKVSSNDSDNEVDLAIKSTEDLSIGSIVRAYVKSVKPDQLNVLLAANHHGRIHISE 917 (1710)
T ss_pred C-hhHHHH-HHhhcchhhccceeEEEeccccCCCccccccccccceeeeeEEEEEEeeecccceEEeccccccCceehHH
Confidence 6 222211 111100 00 11111223456678999999999999999999999999999999999999
Q ss_pred ccCCccccccccccccCCCCEEEEEEEeee-cC----C-CCccceeEEEeeccccccccccccccccccccCCCCCEEEE
Q 000176 1096 VNDDKSNVVENLFSNFKIGQTVTARIIAKS-NK----P-DMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTG 1169 (1924)
Q Consensus 1096 ~~d~~~~~~~~p~~~~~~G~~v~~~Vl~~~-~~----~-~~~~~~~~eLS~r~~~~~~~~~~~~~~~~~~~~~~G~~v~g 1169 (1924)
++|+..++ ..|+++|++|+.|.|||+|.| .+ + ...+..++|||+||+.++.... . +-+..+++.||.++|
T Consensus 918 v~d~~~ei-tDp~~k~~vG~~I~vrviG~~D~k~lpith~i~k~~v~ElSvkps~les~~~-~--t~s~~q~~~gq~vtG 993 (1710)
T KOG1070|consen 918 VLDNLHEI-TDPLDKFKVGDGIFVRVIGGHDVKDLPITHLISKEQVLELSVKPSELESDEF-N--TTSTKQFKAGQEVTG 993 (1710)
T ss_pred hhcccccc-CChhhhcccCCeEEEEEEcCCccccCccccccchhhhhhhccChhhhccccc-c--ccchhhhhcCCeEEE
Confidence 99988765 449999999999999999996 11 1 2234689999999999984431 1 111125799999999
Q ss_pred EEEEEECCeEEEEeCCCeEEEEEccccCCCCchhhhhccccCCCCEEEEEEEEEeCCCcEEEEEeccccccccccccccc
Q 000176 1170 YVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDIS 1249 (1924)
Q Consensus 1170 ~V~~v~~~~~~v~l~~~~~g~i~~~~~s~~~~~~~~~~~~f~vG~~v~~~V~~vd~~~~~l~LS~~~~~~~~~~~~~~~~ 1249 (1924)
||+++..+|+|+.++|.++||||+.+++.+...+++|+..|++|++++++|++.+...-...++.... .
T Consensus 994 fV~nv~ke~~w~~isp~v~~RIplld~s~~~~~le~~e~~F~~g~al~~~V~~~~~~~tv~~iG~~~~-----------~ 1062 (1710)
T KOG1070|consen 994 FVNNVSKEWLWVRISPFVDGRIPLLDTSLDLHVLELPESLFPLGKALDEYVVRNDKSKTVRAIGFSKS-----------D 1062 (1710)
T ss_pred EEEccccceeEEEccccccceeeeeeccchhhhhhCchhhcccccceeeEEecccceeEEEecccccC-----------C
Confidence 99999999999999999999999999998888899999999999999999999873222222222211 1
Q ss_pred ccccccccCCCCEEEEEEEEEecCcCeEEEEeCCceEEEEecc-cccccccCCCCCCCCCCCEEEEEEEEEecccCCceE
Q 000176 1250 NDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFT-ELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFH 1328 (1924)
Q Consensus 1250 ~~~~~~~i~~G~~v~g~V~~v~~~~~g~~V~l~~~~~G~v~~s-elsd~~~~~p~~~~~~G~~v~~~Vl~vd~~~~~~~~ 1328 (1924)
... .+|++..|+|.++.++ ++.++++++..|.++.. +++++|..+|...|..++.+.+++|.++.. ++.
T Consensus 1063 k~~-----s~G~~l~Grv~kv~~~--~~~l~~~~~~~G~~~~i~~~~d~~~~~P~~~f~~~~~v~~~~L~vs~~---n~~ 1132 (1710)
T KOG1070|consen 1063 KNP-----SPGDILFGRVSKVLPG--YLILQLPFKVFGRVSFIEDMSDSYSMTPVEHFTKIQIVYVCVLSVSAL---NKG 1132 (1710)
T ss_pred CCC-----Ccchhhcceeeeeccc--eeEEecCCccccceEEeeehhccccCChHHhcccccEEEEEEEEEecc---ccc
Confidence 111 2899999999999999 89999999999977755 999999999999999999999999999976 455
Q ss_pred EEEeeeccccCCCCCCCCCCCCCCCCCcchhhhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCC
Q 000176 1329 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP 1408 (1924)
Q Consensus 1329 i~LSlr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~ 1408 (1924)
+.||+|.++.++.+ ....++.+++++|+++|++++|||+++.+.|+|+.|++++.||++++++++.+.+.|
T Consensus 1133 leLslr~sr~~~t~---------~~~kd~~iks~eDlk~g~iv~G~V~nv~~~glfi~ls~~v~a~v~is~~~ds~~k~w 1203 (1710)
T KOG1070|consen 1133 LELSLRESRTKITP---------VDSKDGSIKSIEDLKIGDIVRGFVKNVETKGLFIALSRKVEAFVPISGLSDSFEKEW 1203 (1710)
T ss_pred ceeecccccccCcc---------ccccCCcccchhhcccCceeEEEEEEecCCcEEEEEccceEEEEEccccccchhhhh
Confidence 99999998843322 234677899999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCcEEEEEEEEEeCCCCEEEEEeecccccccchhccccccccCCCcEEEEEEEEeecceEEEEEecC-ceeEEee
Q 000176 1409 EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCH 1487 (1924)
Q Consensus 1409 ~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~-~v~gl~h 1487 (1924)
++.|++|++|.++|++++...+|++||||++....... ....+.++++||...|+|.++.+||+||+++++ ++.|+||
T Consensus 1204 ~k~~~~gklv~~rv~~ve~~s~riel~Lk~s~~~d~~~-~~~~~~~l~~gd~~~g~v~~~~~~G~fi~l~~tv~~~g~~~ 1282 (1710)
T KOG1070|consen 1204 EKHLPVGKLVTGRVLSVEEDSKRIELSLKNSDIKDTVK-LLKDSKDLKKGDREDGTVEVVDPFGLFIKLDVTVNMVGLCH 1282 (1710)
T ss_pred hccCCccceeeeEEEEeeccCceEEEEEeccccCCchh-hhhhhhhhhccccccceEEEecCCceEEEecCcceeccccc
Confidence 99999999999999999999999999999988753222 344578999999999999999999999999987 5899999
Q ss_pred ccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEeccccccCCCcccccCCcccchhHHHHhhcccCcccccccCc
Q 000176 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSS 1567 (1924)
Q Consensus 1488 ~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1567 (1924)
++++++.+.++....|..|+.|+|.+++++.+++||++++|.+|+..+++....+..++.-+. +.+..+.....+...
T Consensus 1283 ~~e~~d~~~e~it~~~~~~~~V~a~~lk~~~ek~rIsl~~k~s~~~~~dd~~~~~~~~e~v~~--~~~~~~d~~s~~~~~ 1360 (1710)
T KOG1070|consen 1283 ISEEADDRGENITALYYAGDRVKACVLKEDSEKKRISLGLKSSYLSSEDDARITSYGEEGVEM--EEESHSDPKSMEEVA 1360 (1710)
T ss_pred ceeecchhhhhcccceeccceeeeEeeeccchhhhhhhhhhhhccCChhhhhcccccccCcch--hcccccCccchhhhc
Confidence 999999999999999999999999999999999999999999999664422211100000000 000000000000000
Q ss_pred cccccccccccCC-C-cccccccccccCCCCc-cc-cCCCCCCCcCcCCCCCCCCccchhhhhhhhhhhhhhHHHHHHHH
Q 000176 1568 VAVQDMDMESEDG-G-SLVLAQIESRASVPPL-EV-NLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQ 1643 (1924)
Q Consensus 1568 ~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~e~ 1643 (1924)
.+|-+ .+ ++. . .-....++.....+++ +- .|++++.|+.-++.+ .++|+.+ ++++..+++.|.
T Consensus 1361 ~~d~g--~q-~~~~g~~~e~~~d~~~~~~p~~le~s~~td~e~d~~~~~~e--~~qde~d--------ee~e~~kee~e~ 1427 (1710)
T KOG1070|consen 1361 AEDPG--FQ-SSSGGFNLEDAVDEMSETLPDALEDSCETDSEVDEEVEDEE--LDQDEKD--------EEKEKDKEEREE 1427 (1710)
T ss_pred ccCCC--cc-ccccceehhhhhhhccccCCchhhhcccchhhhhhcccccc--ccccccc--------hhhhhhhhhccc
Confidence 00000 00 000 0 0000001111111221 11 255544332111111 1111000 111112223334
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHH
Q 000176 1644 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL 1723 (1924)
Q Consensus 1644 ~~~~~e~~~~~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~l 1723 (1924)
....+++.++. +.|++.++|+|+++.+||++.+|++||+|+++.+++++||++++|||.+|++||+.|++|+|+||+||
T Consensus 1428 ~~~~~e~~dl~-~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNl 1506 (1710)
T KOG1070|consen 1428 NRSDEEERDLS-RAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNL 1506 (1710)
T ss_pred cccchhhcccc-cCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhH
Confidence 44455555545 79999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHH
Q 000176 1724 ENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQ 1802 (1924)
Q Consensus 1724 e~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~ 1802 (1924)
|+.|| ++++..++|+||||+|++..+|.+|+.+|+..+++++|.++|+.|+++|++..++|..|++|++++ +.++|+
T Consensus 1507 En~yG--~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~ 1584 (1710)
T KOG1070|consen 1507 ENAYG--TEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAAR 1584 (1710)
T ss_pred HHhhC--cHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHH
Confidence 99999 789999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 000176 1803 AVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1882 (1924)
Q Consensus 1803 ~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~ 1882 (1924)
.+++|||+++|.++|++++.+||++||++||.||||++||..|..||+|.|+|+.|+++++++|+.+.+|.+|||+++++
T Consensus 1585 ~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1585 ELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 000176 1883 LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1923 (1924)
Q Consensus 1883 ~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~~~ 1923 (1924)
+++++|++||++|++||.++||.+.++.|++||++||++..
T Consensus 1665 l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EYv~s~~ 1705 (1710)
T KOG1070|consen 1665 LSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEYVESIK 1705 (1710)
T ss_pred CChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999853
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-108 Score=1028.65 Aligned_cols=1478 Identities=21% Similarity=0.240 Sum_probs=1102.3
Q ss_pred eeeccccCCcCcccEEEEEEEEEecccEEEEcC-CCcEEEEeccccCchhhccccccccCCCCCCcccCCCEEEEEEEEe
Q 000176 122 YANKITLKNISAGMKLWGVVAEVNEKDLVICLP-GGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQL 200 (1924)
Q Consensus 122 ~~e~l~~k~l~~G~~~lg~V~~i~~~~l~vslp-~~l~g~v~~~~is~~~~~~~~~~~~~~~l~~~f~~Gq~v~~~V~~~ 200 (1924)
...+||-..+.+||.+-+.|.++.+++.++..- ..++|++-. |+ ..+|.++|++||||||+|++.
T Consensus 145 ~~t~lS~~~~~~~~~l~~~v~S~ed~g~~l~~g~~~~~~~~e~---~q-----------~pn~~~~lKvGq~l~~~V~k~ 210 (1710)
T KOG1070|consen 145 LNTHLSDEMLAAGEVLDTAVVSIEDHGAILDVGLDEITGFIEK---SQ-----------FPNLGAKLKVGQWLRVSVTKS 210 (1710)
T ss_pred cccccCHhHhhhhhhhccccccccccccchhcCCccccchhhh---cc-----------CchhhhhcccCceEEEEEEec
Confidence 457899999999999999999999999887762 123333211 11 236778999999999999987
Q ss_pred ecCc-cccceeEEEEEechhhhccCCCcccccCCcEEEEEEeeeeceeEEEEecCCcceeeccCCCCCCCCCCccCCCcE
Q 000176 201 DDDK-KEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLL 279 (1924)
Q Consensus 201 ~~~~-~~~~~~~i~LSl~p~~vn~~l~~~~l~~g~~l~~~V~svedhG~ild~Gi~~~~gFl~~~~~~~~~~~~l~~G~~ 279 (1924)
.... .+..+++++++++|...| ++..++|.|||+++|.|+||||||+++|| +.+++|||+++++++.. .+.+||.
T Consensus 211 ~s~~v~ks~~~~~~~t~~~t~~~-~~~~~~LvpGt~vqa~V~sv~~~Gi~~di-l~~ftG~l~~~hl~~~~--~~~~~~~ 286 (1710)
T KOG1070|consen 211 TSERVVKSTKFVEVLTLNPTSCN-GLALNDLVPGTMVQAEVQSVEDHGITLDI-LNGFTGFLDKKHLPPFL--RYFENQE 286 (1710)
T ss_pred cCceEEecccceeeecccchhcc-ccchhhcCCcceEEEEecceecCcEEEEe-cccccceeehhhCCchh--hccccHH
Confidence 6521 111378999999999999 89999999999999999999999999999 79999999999998665 6889999
Q ss_pred EEEEEEEEcCCCcEEEEccCccccccccccCcccccccccCCCceEEEEEEEEecCeEEEEecCceEEEEeccccCCCCC
Q 000176 280 LQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 359 (1924)
Q Consensus 280 ~~~~v~~~~~~~~~v~ls~~~~~~~~~~~~~~~~~~~~~l~pG~~v~~~V~~v~~~Gl~v~~~~~~~g~v~~~hl~~~~~ 359 (1924)
++|.|+.. +.|++.+..-. -++ ++.. -..+++++.||..++..+..+.+.|..+++++.-.+..+..|+....+
T Consensus 287 ~l~~vi~~--s~Rv~~~~f~~--ka~-ki~~-l~~~v~ai~p~~~~~~~~~e~~k~G~~~K~~vi~~~~~~~~~~~tl~~ 360 (1710)
T KOG1070|consen 287 KLGKVIHK--SDRVFVVDFFD--KAS-KILV-LKAGVDAIAPSRIEKVLSFEIFKIGNKVKCRVIDVLQMDSLALFTLKE 360 (1710)
T ss_pred Hhhcccch--hhheeeechhh--ccc-eEEE-ecCccceEccCCcccccchhhcccCceEEEEEEEEeeccceEEeecch
Confidence 99998764 46777665421 111 1111 234789999999999999999999999999998899999999987654
Q ss_pred CCCccccCCCCCEEEEEEEEEeC--C-CceEEEeeCccccccCC--C----CCCCCCCCeEEeeEEEEEeCCceEEEEcC
Q 000176 360 TTNWKNDYNQHKKVNARILFVDP--T-SRAVGLTLNPYLLHNRA--P----PSHVKVGDIYDQSKVVRVDRGLGLLLDIP 430 (1924)
Q Consensus 360 ~~~~~~~~~~G~~v~arVl~~~~--~-~k~v~lSl~p~~~~~~~--~----~~~~~~G~iv~~~~V~~~~~~~G~~v~~~ 430 (1924)
.+++.+|..+.-|++|++..-| . +-.++++-+||+..+.. | .....+|..+-.|.+...+..+++++...
T Consensus 361 -s~ie~k~~~~s~V~~r~l~~~~~svdt~~~~l~~L~hv~~f~~a~p~~~~~~~~di~~~vl~~~ak~~~vt~~v~~~sK 439 (1710)
T KOG1070|consen 361 -SAIEGKFSLVSDVSPRGLLKKPVSVDTEEVGLSPLPHVLGFEYADPSKKISDGKDIGFRVLTCKAKCGSVTLKVLCVSK 439 (1710)
T ss_pred -hhccCceEEEeccCCceEEEecccCChhhhhccccchhhceeecCCCcccccccceeeEEeeccceeeeeeeeeeEeec
Confidence 4788999999999999999877 3 33799999999997543 2 24577788777788777776667666654
Q ss_pred CCCCccceEEeccchhhHHHHhhh----hcccCCCEEEEEEEEEeecCCeEEEEeecccccccccccccCCCCCeEEEEE
Q 000176 431 STPVSTPAYVTISDVAEEEVRKLE----KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV 506 (1924)
Q Consensus 431 ~~~~~~~gfv~~s~~~~~~~~~~~----~~~~vG~~~~~rV~~~~~~d~~~~~s~k~~~~~~~~~~~~~l~~G~~v~g~V 506 (1924)
. +.+.+|++...+.++.+.... ..|++|+++.|||.+|.+.+..++|++.++++..++++.+||+.|++|.|+|
T Consensus 440 ~--pvis~y~~~~~~t~~~l~~v~q~~v~~~e~~te~~~rv~~v~~v~~v~~v~~~~svl~lk~~~~nDI~iG~~V~~~I 517 (1710)
T KOG1070|consen 440 L--PVISMYADAVKLTHGMLSKVPQGMVPIYEVGTEVKSRVWQVFYVGKVVIVSVRESVLGLKFLRVNDIEIGQLVPGVI 517 (1710)
T ss_pred C--cceEEEeeccccCcchhhccccCCCCceecCCcccCccceecccCcEEEEEEehHhhcccccccccccccceeeeEE
Confidence 3 345799998877766665542 3599999999999999999999999999999999999999999999999999
Q ss_pred EEEecCceEEEeCCC-eEEeecCCCcccccccCCCCCCCCCCEEEEEEEEE--eCCeEEEEEccccccchhhHhhhhccc
Q 000176 507 IAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEA 583 (1924)
Q Consensus 507 ~~v~~~G~~V~l~~~-v~g~vp~~hlsd~~~~~p~~~f~vG~~vk~rVl~v--~~~~l~lT~K~~Lv~~~~~~~~~~~~~ 583 (1924)
.++++.|+.|.+..+ |.|++|..||+|.+...|+.+|++|..+++|||.+ +++++.||+|++|++...|...+|+++
T Consensus 518 ~~vt~~Gv~v~v~~~ni~g~lp~~hlsd~~~~~p~~~f~v~~~~k~RVl~~~~~~~~v~l~~K~slv~~~~plp~d~~~~ 597 (1710)
T KOG1070|consen 518 RKVTPQGVEVLVTFGNIKGVLPKEHLSDHPLQPPLRDFKVGSGVKLRVLSVNRDRNRVALTLKKSLVNTQLPLPSDFEQA 597 (1710)
T ss_pred EEecCCcEEEEEecCceeeecChHhhhhcccccccceeeeccccEEEEEEEEccCCeeEEEechhhhcccCCCccchhhc
Confidence 999999999998765 99999999999999999999999999999999999 589999999999999999999999999
Q ss_pred CCCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCCCCCCCCCCCCCCCEEEEEEEEEcCCCCEEEEEEeeCCCCc--
Q 000176 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV-- 661 (1924)
Q Consensus 584 ~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~~ri~lS~k~~~~~~-- 661 (1924)
++|++++|+|.++.++||||+|+|++.||+|.++|+..++.+++++|.+||+|.+.|+++|++++||.+||+++++..
T Consensus 598 ~pg~~~~G~l~~~~~~g~~V~F~g~lsGf~p~s~~sd~~v~~~~ehf~vGqTv~~~i~nvd~ek~rm~l~~r~s~~~~a~ 677 (1710)
T KOG1070|consen 598 IPGKITKGTLCAIKENGAFVTFTGGLSGFAPVSEMSDDFVLSDSEHFPVGQTVRAKIVNVDDEKRRMPLGLRASSCARAC 677 (1710)
T ss_pred CCCceEEEEEeeeccCCeEEEecCccccccchhhhhhhhhcChhhhcccccEEEEEEEecCchhceeehhhhhhhhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999887632
Q ss_pred --ccccccCCCCEEEEEEEEEccCcEEEEEEecCceeEEEeCCcCCCC-ccchhhhccccCCCCeEeeEEEeecCCC--e
Q 000176 662 --SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH-LEHATVMKSVIKPGYEFDQLLVLDNESS--N 736 (1924)
Q Consensus 662 --~~~~~~~~G~iv~g~V~~~~~~g~~V~l~~~~~~~g~i~~~~Lsd~-~~~~~~~~~~~~~G~~i~~vl~id~~~~--~ 736 (1924)
...+.+..|.+..+.+...+.+.+.|++. ..++.|++...||.|. ...+..+.+.++.+...-. |+++...+ -
T Consensus 678 ~~~~~e~~~~g~v~s~~~~~~tkd~viVei~-~~~~~~v~~~~~L~dg~v~~~~~~~~kl~~~t~~~~-lv~gq~~~~~i 755 (1710)
T KOG1070|consen 678 VKRSVENFVKGGVKSLKSIDKTKDSVIVEIV-DQGITGVGVFGELVDGSVVVNKVLENKLRKNTSLLH-LVVGQVTVGVI 755 (1710)
T ss_pred HHHHHHHhhccccccceeehhccccEEEEcc-CcceEEEEEEEEEccCceEEccchhhhhhhcchhhe-eeecceeEEEE
Confidence 23467788988899999999999999994 2479999999999983 3344444444443333332 23332222 2
Q ss_pred EEEEecccccchhc--cCCCCcCccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEE
Q 000176 737 LLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRS 814 (1924)
Q Consensus 737 i~ls~K~sl~~~~~--~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~ 814 (1924)
+.+++|.+++..+. .+|....++..|...+++|.+|...|.|+.|.+++.+|++.+++.+....+....++ ||.|.|
T Consensus 756 ~~isl~k~lv~~s~~~~L~~~~~~l~k~~~~~~~v~~is~~~~~~a~~~~~i~~v~~s~~v~s~~~d~~~~~y-~Q~v~~ 834 (1710)
T KOG1070|consen 756 LSISLKKSLVLISLCTDLPNNATKLLKGSYALALVRSISKEGKFVAFVSNLIALVKVSHLVDSELDDLTKAEY-GQSVTV 834 (1710)
T ss_pred EEeehhhhhhhccccccccchHHHHhcCchhHHHHHhhhhheeheeecccccceeeccccccccccccceeee-ecccce
Confidence 56666777765544 366667778889999999999999999999999999999999988776666554444 399999
Q ss_pred EEEEeeCCCCeEEEeecccccCCCchhhHHHHHHHHHHHHHhhcccCCCccccccccccCccEEEEEEEEEecceeEEEe
Q 000176 815 NILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894 (1924)
Q Consensus 815 ~V~~id~~~~r~~lSlk~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~v~g~V~~i~~~g~~v~l 894 (1924)
+++++++......++++......
T Consensus 835 ~~~st~~~~~~~~~a~e~p~~K~--------------------------------------------------------- 857 (1710)
T KOG1070|consen 835 KLLSTEPKVVKDLKAVEKPKKKK--------------------------------------------------------- 857 (1710)
T ss_pred EEEecChhHHHHHHhhcchhhcc---------------------------------------------------------
Confidence 99999887666665555432200
Q ss_pred ccCCceeEEEeeeecCCcccccCCeEEEEEEEeeccccEEEEeechhhhhhhhhcchhhHHhHhhhhhccccccCCCcEE
Q 000176 895 EEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 974 (1924)
Q Consensus 895 ~~~~~v~g~i~~~~l~~~~~~~G~~v~~~Vl~vd~~~~~v~ls~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v 974 (1924)
.+. ....+++.....|+.++ +...++..|+.+
T Consensus 858 -----------------------~~~-~~~~~~~~~d~~Vd~a~------------------------k~~~~~~igsiv 889 (1710)
T KOG1070|consen 858 -----------------------EKK-FIKVSSNDSDNEVDLAI------------------------KSTEDLSIGSIV 889 (1710)
T ss_pred -----------------------cee-EEEeccccCCCcccccc------------------------ccccceeeeeEE
Confidence 000 00000101111121211 123568999999
Q ss_pred EEEEEEEeeeEEEEEecCCcceEEEEeeecCC----CCCCCcccccCCCeEEEEEeccCCCCccchhhhhhhhccc--cc
Q 000176 975 NAIVEIVKENYLVLSLPEYNHSIGYASVSDYN----TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE--TE 1048 (1924)
Q Consensus 975 ~g~V~~i~~~~v~vsl~~~~~~~g~~~~~~~~----~~~~~~~~f~~Gq~v~~~V~~~~~~~~~~~~~l~~~~~~~--~~ 1048 (1924)
.|+|..|+++.+.|.| +.+..|.++++|.- .-..|..+|++|++|.|+|....+. ..+..+..-... .+
T Consensus 890 ~a~v~svKp~~L~v~l--~~~~~gri~isev~d~~~eitDp~~k~~vG~~I~vrviG~~D~---k~lpith~i~k~~v~E 964 (1710)
T KOG1070|consen 890 RAYVKSVKPDQLNVLL--AANHHGRIHISEVLDNLHEITDPLDKFKVGDGIFVRVIGGHDV---KDLPITHLISKEQVLE 964 (1710)
T ss_pred EEEEeeecccceEEec--cccccCceehHHhhccccccCChhhhcccCCeEEEEEEcCCcc---ccCccccccchhhhhh
Confidence 9999999999999999 68899999998873 2233888999999999999985321 111111110000 11
Q ss_pred ccccc--------ccccCCCCCCCCeEEEEEEEEeCCeEEEEeCCCeeEEEEcccccCCccccccccccccCCCCEEEEE
Q 000176 1049 TSSSK--------RAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 1120 (1924)
Q Consensus 1049 ~~~~~--------~~~~~~~~~~G~~v~g~V~~v~~~~l~V~l~~~~~G~i~~~e~~d~~~~~~~~p~~~~~~G~~v~~~ 1120 (1924)
.+..+ ..+....++.|+.|.|.|..+.+..+.|.+...+.|||++-.+..+. ...++|-+.|..|+.++++
T Consensus 965 lSvkps~les~~~~t~s~~q~~~gq~vtGfV~nv~ke~~w~~isp~v~~RIplld~s~~~-~~le~~e~~F~~g~al~~~ 1043 (1710)
T KOG1070|consen 965 LSVKPSELESDEFNTTSTKQFKAGQEVTGFVNNVSKEWLWVRISPFVDGRIPLLDTSLDL-HVLELPESLFPLGKALDEY 1043 (1710)
T ss_pred hccChhhhccccccccchhhhhcCCeEEEEEEccccceeEEEccccccceeeeeeccchh-hhhhCchhhcccccceeeE
Confidence 11111 11223578999999999999999999999999999999987765221 1237888999999999999
Q ss_pred EEeeecCCCCccceeEEEeeccccccccccccccccccccCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEEcc-ccCCC
Q 000176 1121 IIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFIL-DSAYE 1199 (1924)
Q Consensus 1121 Vl~~~~~~~~~~~~~~eLS~r~~~~~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~~~v~l~~~~~g~i~~~-~~s~~ 1199 (1924)
|.+.+.. .++..++ ++. .... ..+|++.-|.|.++..+++.|++....-|+++.. +++++
T Consensus 1044 V~~~~~~-----~tv~~iG--~~~----------~~k~--~s~G~~l~Grv~kv~~~~~~l~~~~~~~G~~~~i~~~~d~ 1104 (1710)
T KOG1070|consen 1044 VVRNDKS-----KTVRAIG--FSK----------SDKN--PSPGDILFGRVSKVLPGYLILQLPFKVFGRVSFIEDMSDS 1104 (1710)
T ss_pred Eecccce-----eEEEecc--ccc----------CCCC--CCcchhhcceeeeeccceeEEecCCccccceEEeeehhcc
Confidence 9887610 0111111 110 0111 2599999999999999999999999999977766 77766
Q ss_pred CchhhhhccccCCCCEEEEEEEEEeCCCcEEEEEecccccc-----cccccccccccccccccCCCCEEEEEEEEEecCc
Q 000176 1200 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG-----ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV 1274 (1924)
Q Consensus 1200 ~~~~~~~~~~f~vG~~v~~~V~~vd~~~~~l~LS~~~~~~~-----~~~~~~~~~~~~~~~~i~~G~~v~g~V~~v~~~~ 1274 (1924)
.+ .+|...|..++.+.++++.++..++.+.||++..... ..+....+.++++ .|+++.|.|..+.+.
T Consensus 1105 ~~--~~P~~~f~~~~~v~~~~L~vs~~n~~leLslr~sr~~~t~~~~kd~~iks~eDlk-----~g~iv~G~V~nv~~~- 1176 (1710)
T KOG1070|consen 1105 YS--MTPVEHFTKIQIVYVCVLSVSALNKGLELSLRESRTKITPVDSKDGSIKSIEDLK-----IGDIVRGFVKNVETK- 1176 (1710)
T ss_pred cc--CChHHhcccccEEEEEEEEEecccccceeecccccccCccccccCCcccchhhcc-----cCceeEEEEEEecCC-
Confidence 54 3577789999999999999998888899999954321 1123334455665 999999999999999
Q ss_pred CeEEEEeCCceEEEEecccccccccCCCCCCCCCCCEEEEEEEEEecccCCceEEEEeeeccccCCCCCCCCCCCCCCCC
Q 000176 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1354 (1924)
Q Consensus 1275 ~g~~V~l~~~~~G~v~~selsd~~~~~p~~~~~~G~~v~~~Vl~vd~~~~~~~~i~LSlr~~~~~~~~~~~~~~~~~~~~ 1354 (1924)
|+|+.|+.++.++++++++++.+...+...|++|+.+..+|+.++.. .+++.||++++..+. +
T Consensus 1177 -glfi~ls~~v~a~v~is~~~ds~~k~w~k~~~~gklv~~rv~~ve~~---s~riel~Lk~s~~~d----~--------- 1239 (1710)
T KOG1070|consen 1177 -GLFIALSRKVEAFVPISGLSDSFEKEWEKHLPVGKLVTGRVLSVEED---SKRIELSLKNSDIKD----T--------- 1239 (1710)
T ss_pred -cEEEEEccceEEEEEccccccchhhhhhccCCccceeeeEEEEeecc---CceEEEEEeccccCC----c---------
Confidence 99999999999999999999999999899999999999999999986 689999999986111 0
Q ss_pred CcchhhhhccCCCCCEEEEEEEEEeeceEEEEeCCCc--EEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEE
Q 000176 1355 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL--DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432 (1924)
Q Consensus 1355 ~~~~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v--~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri 1432 (1924)
........+++.|+...|+|.++.++|+|+.+++++ .|++|+++..+.+..+....|..|+.|.+.++.++.+.+||
T Consensus 1240 -~~~~~~~~~l~~gd~~~g~v~~~~~~G~fi~l~~tv~~~g~~~~~e~~d~~~e~it~~~~~~~~V~a~~lk~~~ek~rI 1318 (1710)
T KOG1070|consen 1240 -VKLLKDSKDLKKGDREDGTVEVVDPFGLFIKLDVTVNMVGLCHISEEADDRGENITALYYAGDRVKACVLKEDSEKKRI 1318 (1710)
T ss_pred -hhhhhhhhhhhccccccceEEEecCCceEEEecCcceecccccceeecchhhhhcccceeccceeeeEeeeccchhhhh
Confidence 112344567899999999999999999999999887 89999999999999998888999999999999999999999
Q ss_pred EEEeecccccccchhccccccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEE
Q 000176 1433 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512 (1924)
Q Consensus 1433 ~LSlk~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~ 1512 (1924)
.+.+|.+-.....+.. ++.-..-|+=-+.+ ...++ +.-+.+-+.
T Consensus 1319 sl~~k~s~~~~~dd~~----------------~~~~~~e~v~~~~~----------------~~~d~----~s~~~~~~~ 1362 (1710)
T KOG1070|consen 1319 SLGLKSSYLSSEDDAR----------------ITSYGEEGVEMEEE----------------SHSDP----KSMEEVAAE 1362 (1710)
T ss_pred hhhhhhhccCChhhhh----------------cccccccCcchhcc----------------cccCc----cchhhhccc
Confidence 9999987653211110 00000000000000 00000 000000000
Q ss_pred EEEEecCCCeeEEeccccccCCCcccccCCcccchhHHHHhhcccCcccccccCccccccccccccCCCccccccccccc
Q 000176 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRA 1592 (1924)
Q Consensus 1513 Vl~id~e~~ri~lslK~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1592 (1924)
.-....+-+ .| ..++.. ..++....... +++++.+...++..
T Consensus 1363 -------d~g~q~~~~--g~------------~~e~~~--d~~~~~~p~~l------------e~s~~td~e~d~~~--- 1404 (1710)
T KOG1070|consen 1363 -------DPGFQSSSG--GF------------NLEDAV--DEMSETLPDAL------------EDSCETDSEVDEEV--- 1404 (1710)
T ss_pred -------CCCcccccc--ce------------ehhhhh--hhccccCCchh------------hhcccchhhhhhcc---
Confidence 000000000 00 000000 00000000000 00000000000000
Q ss_pred CCCCccccCCCCCCCcCcCCCCC---CCCccch--hhhhhhhhhhhhhHHHHHHHHH----------H-HHHHHHHhcCC
Q 000176 1593 SVPPLEVNLDDEQPDMDNGISQN---QGHTDEA--KTIDEKNNRHAKKKEKEEREQE----------I-RAAEERLLEKD 1656 (1924)
Q Consensus 1593 ~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~k~~~k~~~e~~----------~-~~~e~~~~~~~ 1656 (1924)
.+.+.++++.+.+- -++.+++ ++......+ .+...++.+.. | +-+.-.+.-.+
T Consensus 1405 ---------~~~e~~qde~dee~e~~kee~e~~~~~~e~~dl~~--~pesaeDferlvrssPNSSi~WI~YMaf~LelsE 1473 (1710)
T KOG1070|consen 1405 ---------EDEELDQDEKDEEKEKDKEEREENRSDEEERDLSR--APESAEDFERLVRSSPNSSILWIRYMAFHLELSE 1473 (1710)
T ss_pred ---------ccccccccccchhhhhhhhhccccccchhhccccc--CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhh
Confidence 00000000000000 0000000 000000000 00000111111 1 11111122345
Q ss_pred CCchHHHHHHHHH-hCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCC
Q 000176 1657 APRTPDEFERLVR-SSP----NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1731 (1924)
Q Consensus 1657 ~p~a~~~ferll~-~~P----~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~ 1731 (1924)
.+.|++.+||+|. .|+ .--.+|++|..++..-|.-+...++|+||-+.++. +.++.+++.++...+.+
T Consensus 1474 iekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~------~~V~~~L~~iy~k~ek~- 1546 (1710)
T KOG1070|consen 1474 IEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDA------YTVHLKLLGIYEKSEKN- 1546 (1710)
T ss_pred hHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcch------HHHHHHHHHHHHHhhcc-
Confidence 7889999999995 555 35779999999999999999999999999987663 56888899998888855
Q ss_pred HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhc-CHHHHHHHHHH
Q 000176 1732 EEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKH--SCKVWLRRVQRLLKQ-QQEGVQAVVQR 1807 (1924)
Q Consensus 1732 ~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~--~~~vw~~~a~~l~~~-~~~~A~~l~~r 1807 (1924)
+.|.++|++.++.... ..+|..|+.++.+..+-++|++++++|++-.|. ...+....|++.++. +.+++|.+|+-
T Consensus 1547 -~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEg 1625 (1710)
T KOG1070|consen 1547 -DEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEG 1625 (1710)
T ss_pred -hhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHH
Confidence 8999999999998774 599999999999999999999999999987765 788888999999999 99999999999
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1808 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE--YPKRTD-LWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1808 al~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~--~Pk~~d-lw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
.|..+|++. ++|+-|+.++.++|+.+.+|.+|||++.. .|++.. ++..|+++|-..||-..+..+=.||+.
T Consensus 1626 ll~ayPKRt--DlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1626 LLSAYPKRT--DLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKE 1699 (1710)
T ss_pred HHhhCccch--hHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 999999995 89999999999999999999999999875 466554 678899999999998887777777665
|
|
| >COG0539 RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-60 Score=573.18 Aligned_cols=492 Identities=23% Similarity=0.278 Sum_probs=434.8
Q ss_pred ccccccCCCceEEEEEEEEecCeEEEEecCceEEEEeccccCCCCCCCCccccCCCCCEEEEEEEEEeCCCceEEEeeCc
Q 000176 314 ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNP 393 (1924)
Q Consensus 314 ~~~~~l~pG~~v~~~V~~v~~~Gl~v~~~~~~~g~v~~~hl~~~~~~~~~~~~~~~G~~v~arVl~~~~~~k~v~lSl~p 393 (1924)
.+...+.||+.|.|+|.+|.++++.|.+++...|+|+...++..... ..|++|+.+.+.|+.+.+....+.||.+.
T Consensus 14 ~~~~~~~~G~vV~G~Vv~i~~~~v~Vdig~Kseg~ip~~E~~~~~~~----~~~~~gd~v~v~v~~~e~~~g~~~lS~~k 89 (541)
T COG0539 14 KSDEEFEPGDVVKGTVVSIEKDGVLVDIGGKSEGVIPISEFSNEPVE----DVVQVGDEVEVLVLRVEDGEGELVLSRRK 89 (541)
T ss_pred cchhccCCCCEEEEEEEEEeCCeEEEEecCccccEeEHHHhcccccc----ceecCCCEEEEEEEEEecCCceEEeeHHH
Confidence 46788999999999999999999999999999999999998865432 27999999999999998887788888765
Q ss_pred cccc--cCCCCCCCCCCCeEEeeEEEEEeCCceEEEEcCCCCCccceEEeccchhhHHHHhhhhcccCCCEEEEEEEEEe
Q 000176 394 YLLH--NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR 471 (1924)
Q Consensus 394 ~~~~--~~~~~~~~~~G~iv~~~~V~~~~~~~G~~v~~~~~~~~~~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~ 471 (1924)
.-.. |..-...+..|.+|+ ++|.....+ |+.|++. +++||+|.|+++..++.+.. -.+|.++.+.|+.++
T Consensus 90 ~~~~~~w~~l~~~~e~~~~V~-~~v~~~vKG-G~~Vdi~----gvr~FlP~S~v~~r~v~d~~--~~~Gk~~~~kiie~d 161 (541)
T COG0539 90 AERERAWEKLEEAFENGEIVE-GKITGKVKG-GLTVDIE----GVRAFLPGSLVDVRPVRDLD--PLIGKELEFKILELD 161 (541)
T ss_pred HHHHHhHHHHHHHHhcCCeEE-EEEEEEecC-cEEEEEC----CEEEeccHHHhccccccccc--ccCCceEEEEEEEEc
Confidence 4332 333345788899998 778877788 9999996 25999999999877665543 578999999999999
Q ss_pred ecCCeEEEEeecc----cccccccccccCCCCCeEEEEEEEEecCceEEEeCCCeEEeecCCCcccccccCCCCCCCCCC
Q 000176 472 HLEGLATGILKAS----AFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 547 (1924)
Q Consensus 472 ~~d~~~~~s~k~~----~~~~~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hlsd~~~~~p~~~f~vG~ 547 (1924)
..++.+++|.+.. ..+++...++.+++|++|+|+|++++++|+||+|+ |++|+||.+||||.++.+|++.|++||
T Consensus 162 ~~~n~vv~SrR~~~e~~~~~~r~e~~~~l~~G~vV~G~V~~It~~GafVdig-GvdGLlHiseiS~~rv~~P~~vvkvGd 240 (541)
T COG0539 162 KKRNNVVLSRRAVLEEERSEQREELLNKLEVGEVVEGVVKNITDYGAFVDIG-GVDGLLHISEISWKRVDHPSEVVKVGD 240 (541)
T ss_pred cccCcEEEEhHHHhhHHHHHHHHHHHhcCCCCceEEEEEEEeecCcEEEEec-CeeeEEehhhccccccCCHHHhcccCC
Confidence 9999999987643 33556788999999999999999999999999999 599999999999999999999999999
Q ss_pred EEEEEEEEE--eCCeEEEEEccccccchhhHhhhhcccCCCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCCCCCC
Q 000176 548 ELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 625 (1924)
Q Consensus 548 ~vk~rVl~v--~~~~l~lT~K~~Lv~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~~~~~ 625 (1924)
+|+|+||++ +++|+.||+|+++.+++..+- ....+|+.+.|+|+++.+|||||++++|+.||+|.|||+|.....
T Consensus 241 ~VkvkVi~~D~e~~RVsLSlK~l~~dPw~~i~---~~~~~g~~v~G~Vt~i~~~GafVei~~GvEGlvhvSEisw~~~~~ 317 (541)
T COG0539 241 EVKVKVISLDEERGRVSLSLKQLEEDPWEGIE---KKYPVGDKVEGKVTNLTDYGAFVEIEEGVEGLVHVSEISWTKKNV 317 (541)
T ss_pred EEEEEEEEEccCCCeEEEEehhcccCcHHHHh---hhcCCCCEEEEEEEEeecCcEEEEecCCccceeechhhcccccCC
Confidence 999999999 589999999999887554332 345789999999999999999999999999999999999998888
Q ss_pred CCCCCCCCCEEEEEEEEEcCCCCEEEEEEeeCCC-Ccc-cccccCCCCEEEEEEEEEccCcEEEEEEecCceeEEEeCCc
Q 000176 626 PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT-RVS-EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703 (1924)
Q Consensus 626 ~~~~~~vGq~v~~rVl~vd~~~~ri~lS~k~~~~-~~~-~~~~~~~G~iv~g~V~~~~~~g~~V~l~~~~~~~g~i~~~~ 703 (1924)
|++++++||+|.|+||+||++++||+||||+... ||. ..+.+++|+.++|.|.+++++|+||.+ .++++|+++.++
T Consensus 318 P~evv~~Gq~V~V~Vl~id~e~rRIsL~iKq~~~~pw~~~~~~~~~g~~v~g~v~~~t~~g~fv~l--e~gidG~vh~~d 395 (541)
T COG0539 318 PSEVVKVGQEVEVKVLDIDPERRRISLGLKQLKENPWEEFADKHPVGDVVEGKVKSITDFGAFVEL--EGGIDGLVHLSD 395 (541)
T ss_pred HHHhcccCCEEEEEEEeeCchhceEEeeehhhhcChhhhhhhhcCCCCeEEEEEeeecccceEEcc--CCCccceEEHHh
Confidence 9999999999999999999999999999998744 554 345589999999999999999999999 788999999999
Q ss_pred CCCCccchhhhccccCCCCeEe-eEEEeecCCCeEEEEecccccchhccCCCCcCccCCCCEEEEEEEEEecCeEEEEEC
Q 000176 704 LADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 782 (1924)
Q Consensus 704 Lsd~~~~~~~~~~~~~~G~~i~-~vl~id~~~~~i~ls~K~sl~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~ 782 (1924)
|+|.....+.. .|+.|++++ .+|.+|++++++.|+.|+...++|.... ..++.|++++|+|+++.++|+||+|.
T Consensus 396 ~sw~~~~~~~~--~~k~Gd~v~~~vl~vd~~~~~isLgiKql~~~p~~~~~---~~~~~~~~v~~~v~~i~~~G~~v~l~ 470 (541)
T COG0539 396 LSWDRPGEEAE--KYKKGDEVEAKVLAVDKEKERISLGIKQLEESPWEEFS---EKYKKGSVVKGKVKSVKDKGAFVELG 470 (541)
T ss_pred cCccccCcHHH--hhccCcEEEEEEEEEecccceeeeehhhhccCchhhhH---hhccCCCeEEEEEEEEccCceEEEec
Confidence 99866554433 899999999 8999999999999999999988877643 34889999999999999999999999
Q ss_pred CCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000176 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1924)
Q Consensus 783 ~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~~ 835 (1924)
+++.||++.+++++. .|++||+|+|+|+++|+.++++.||+|....
T Consensus 471 ~~v~G~i~~~~~~~~-------~~~~gd~v~a~v~~id~k~~ki~lSik~~~~ 516 (541)
T COG0539 471 GGVEGLIRLSELSRD-------VLKVGDEVEAVVVSIDKKNRKILLSIKALER 516 (541)
T ss_pred Cceeeeeecchhhhh-------hccCCCEEEEEEEEEcCCCCEEEEEechhhh
Confidence 999999999999876 7999999999999999999999999997753
|
|
| >COG0539 RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-58 Score=557.96 Aligned_cols=496 Identities=23% Similarity=0.321 Sum_probs=440.6
Q ss_pred CCCCCCCCeEEeeEEEEEeCCceEEEEcCCCCCccceEEeccchhhHHHHhhhhcccCCCEEEEEEEEEeecCCeEEEEe
Q 000176 402 PSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGIL 481 (1924)
Q Consensus 402 ~~~~~~G~iv~~~~V~~~~~~~G~~v~~~~~~~~~~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~~~d~~~~~s~ 481 (1924)
...+.+|+++. ++|+.++.+ +++|+++.+. .|++|+++++..+... .|++|+.+.+.|+.....++.+++|.
T Consensus 16 ~~~~~~G~vV~-G~Vv~i~~~-~v~Vdig~Ks---eg~ip~~E~~~~~~~~---~~~~gd~v~v~v~~~e~~~g~~~lS~ 87 (541)
T COG0539 16 DEEFEPGDVVK-GTVVSIEKD-GVLVDIGGKS---EGVIPISEFSNEPVED---VVQVGDEVEVLVLRVEDGEGELVLSR 87 (541)
T ss_pred hhccCCCCEEE-EEEEEEeCC-eEEEEecCcc---ccEeEHHHhccccccc---eecCCCEEEEEEEEEecCCceEEeeH
Confidence 46789999997 799999998 8999998653 8999999998665333 59999999999999998889999998
Q ss_pred ecccccccc-cccccCCCCCeEEEEEEEEecCceEEEeCCCeEEeecCCCcccccccCCCCCCCCCCEEEEEEEEE--eC
Q 000176 482 KASAFEGLV-FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KS 558 (1924)
Q Consensus 482 k~~~~~~~~-~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hlsd~~~~~p~~~f~vG~~vk~rVl~v--~~ 558 (1924)
++....+.+ -....+..|.+|+|+|+...+.|++|++. |+.||+|.+|++..++.++ .-.+|.+++++|+.+ .+
T Consensus 88 ~k~~~~~~w~~l~~~~e~~~~V~~~v~~~vKGG~~Vdi~-gvr~FlP~S~v~~r~v~d~--~~~~Gk~~~~kiie~d~~~ 164 (541)
T COG0539 88 RKAERERAWEKLEEAFENGEIVEGKITGKVKGGLTVDIE-GVRAFLPGSLVDVRPVRDL--DPLIGKELEFKILELDKKR 164 (541)
T ss_pred HHHHHHHhHHHHHHHHhcCCeEEEEEEEEecCcEEEEEC-CEEEeccHHHhcccccccc--cccCCceEEEEEEEEcccc
Confidence 766555443 33556788999999999999999999998 5999999999986444332 245999999999999 57
Q ss_pred CeEEEEEccccccchhhHhh-hhcccCCCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCCCCCCCCCCCCCCCEEE
Q 000176 559 KRITVTHKKTLVKSKLAILS-SYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 637 (1924)
Q Consensus 559 ~~l~lT~K~~Lv~~~~~~~~-~~~~~~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~~~~~~~~~~~vGq~v~ 637 (1924)
+++.+|+|..+..+....-. -++++++|+++.|+|+++++|||||+++ |++||||+++|+|.++.+|++.|++||+|+
T Consensus 165 n~vv~SrR~~~e~~~~~~r~e~~~~l~~G~vV~G~V~~It~~GafVdig-GvdGLlHiseiS~~rv~~P~~vvkvGd~Vk 243 (541)
T COG0539 165 NNVVLSRRAVLEEERSEQREELLNKLEVGEVVEGVVKNITDYGAFVDIG-GVDGLLHISEISWKRVDHPSEVVKVGDEVK 243 (541)
T ss_pred CcEEEEhHHHhhHHHHHHHHHHHhcCCCCceEEEEEEEeecCcEEEEec-CeeeEEehhhccccccCCHHHhcccCCEEE
Confidence 89999999988865553322 3678899999999999999999999995 599999999999999999999999999999
Q ss_pred EEEEEEcCCCCEEEEEEeeC-CCCccc-ccccCCCCEEEEEEEEEccCcEEEEEEecCceeEEEeCCcCCCCccchhhhc
Q 000176 638 CRIMSSIPASRRINLSFMMK-PTRVSE-DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK 715 (1924)
Q Consensus 638 ~rVl~vd~~~~ri~lS~k~~-~~~~~~-~~~~~~G~iv~g~V~~~~~~g~~V~l~~~~~~~g~i~~~~Lsd~~~~~~~~~ 715 (1924)
|+|+++|++++|+.||+|+. ..||.. ...+++|+.+.|+|++++++|+||++ .++++|++|.+++|+..... ..
T Consensus 244 vkVi~~D~e~~RVsLSlK~l~~dPw~~i~~~~~~g~~v~G~Vt~i~~~GafVei--~~GvEGlvhvSEisw~~~~~--P~ 319 (541)
T COG0539 244 VKVISLDEERGRVSLSLKQLEEDPWEGIEKKYPVGDKVEGKVTNLTDYGAFVEI--EEGVEGLVHVSEISWTKKNV--PS 319 (541)
T ss_pred EEEEEEccCCCeEEEEehhcccCcHHHHhhhcCCCCEEEEEEEEeecCcEEEEe--cCCccceeechhhcccccCC--HH
Confidence 99999999999999999986 446653 47799999999999999999999999 88999999999999844332 46
Q ss_pred cccCCCCeEe-eEEEeecCCCeEEEEecccccchhccCCCCcCccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCcc
Q 000176 716 SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 794 (1924)
Q Consensus 716 ~~~~~G~~i~-~vl~id~~~~~i~ls~K~sl~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~ 794 (1924)
+.+++||+++ .+|.+|+++++|+||+|+..-+||+..... +++|+++.|.|.++|++|+||.+.+|+.||+|.+++
T Consensus 320 evv~~Gq~V~V~Vl~id~e~rRIsL~iKq~~~~pw~~~~~~---~~~g~~v~g~v~~~t~~g~fv~le~gidG~vh~~d~ 396 (541)
T COG0539 320 EVVKVGQEVEVKVLDIDPERRRISLGLKQLKENPWEEFADK---HPVGDVVEGKVKSITDFGAFVELEGGIDGLVHLSDL 396 (541)
T ss_pred HhcccCCEEEEEEEeeCchhceEEeeehhhhcChhhhhhhh---cCCCCeEEEEEeeecccceEEccCCCccceEEHHhc
Confidence 7899999999 899999999999999999999999876533 889999999999999999999999999999999999
Q ss_pred CcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeecccccCCCchhhHHHHHHHHHHHHHhhcccCCCccccccccccC
Q 000176 795 VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII 874 (1924)
Q Consensus 795 s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 874 (1924)
+|.....+...|+.|+.|.|.|+.+|++++|++|++|+... +||..+...++.
T Consensus 397 sw~~~~~~~~~~k~Gd~v~~~vl~vd~~~~~isLgiKql~~---------------------------~p~~~~~~~~~~ 449 (541)
T COG0539 397 SWDRPGEEAEKYKKGDEVEAKVLAVDKEKERISLGIKQLEE---------------------------SPWEEFSEKYKK 449 (541)
T ss_pred CccccCcHHHhhccCcEEEEEEEEEecccceeeeehhhhcc---------------------------CchhhhHhhccC
Confidence 99887777779999999999999999999999999998754 357777888999
Q ss_pred ccEEEEEEEEEecceeEEEeccCCceeEEEeeeecCCcccccCCeEEEEEEEeeccccEEEEeechhhhhh
Q 000176 875 GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDR 945 (1924)
Q Consensus 875 G~~v~g~V~~i~~~g~~v~l~~~~~v~g~i~~~~l~~~~~~~G~~v~~~Vl~vd~~~~~v~ls~k~~l~~~ 945 (1924)
|+.|+|+|++++++|+++.+.+ ++.|+++.++++...+++||+++|+|+.+|+.++.+.||+|+...+.
T Consensus 450 ~~~v~~~v~~i~~~G~~v~l~~--~v~G~i~~~~~~~~~~~~gd~v~a~v~~id~k~~ki~lSik~~~~~e 518 (541)
T COG0539 450 GSVVKGKVKSVKDKGAFVELGG--GVEGLIRLSELSRDVLKVGDEVEAVVVSIDKKNRKILLSIKALERKE 518 (541)
T ss_pred CCeEEEEEEEEccCceEEEecC--ceeeeeecchhhhhhccCCCEEEEEEEEEcCCCCEEEEEechhhhhh
Confidence 9999999999999999999986 57999999999999999999999999999999999999999987764
|
|
| >PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-56 Score=581.09 Aligned_cols=506 Identities=19% Similarity=0.257 Sum_probs=418.2
Q ss_pred cccccCCCcEEEEEEEEEeeeEEEEEecCCcceEEEEeeecCCCCCCCcccccCCCeEEEEEeccCCCCccchhhhhhhh
Q 000176 964 ASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA 1043 (1924)
Q Consensus 964 ~~~~l~~G~~v~g~V~~i~~~~v~vsl~~~~~~~g~~~~~~~~~~~~~~~~f~~Gq~v~~~V~~~~~~~~~~~~~l~~~~ 1043 (1924)
.+..++.|+.|+|+|..++++|+||++ |++..|++|..+|. ..+++|++|.|.|..++ + .+ ..|....
T Consensus 315 ~~~~~~~G~iV~G~Vv~i~~~~v~Vdi--G~K~eGiI~~~E~~------~~~kvGd~i~~~V~~~~--~-~~-~~LS~~~ 382 (863)
T PRK12269 315 SFEAPEPGSVRMGTVVQVNAGTVFVDI--GGKSEGRVPVEEFE------APPKAGDGVRVYVERVT--P-YG-PELSKTK 382 (863)
T ss_pred ccccCCCCCEEEEEEEEEECCEEEEEe--CCCceEEeEHHHhc------cCCCCCCEEEEEEEEEc--C-Cc-eEEEehH
Confidence 356799999999999999999999999 89999999999984 23689999999999875 2 23 3332221
Q ss_pred ccccccccccccccCCCCCCCCeEEEEEEEEe--CCeEEEEeCCCeeEEEEcccccCCccccccccccccCCCCEEEEEE
Q 000176 1044 ISETETSSSKRAKKKSSYDVGSLVQAEITEIK--PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 1121 (1924)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~--~~~l~V~l~~~~~G~i~~~e~~d~~~~~~~~p~~~~~~G~~v~~~V 1121 (1924)
... ...+.+....++.|++|+|+|.++. +.|+.|+++.+.+|++|.+|+..... ..+ ...+|++++++|
T Consensus 383 ~~~----~~~~~~l~~a~~~g~~V~G~Vv~v~~~kgG~~Vdig~~~~gfiP~se~~~~~~----~~~-~~~vG~~ie~~V 453 (863)
T PRK12269 383 ADR----LGLKVKLRDAERDGTPVEGRIVRLTEKKSGFEVDLGAGMMAFLPISQSDCQKV----DAP-ESLIGLTSKFYI 453 (863)
T ss_pred hhh----hHHHHHHHHHHhCCCeEEEEEEEEEeecCEEEEEECCCcEEEEEHHHhccccc----cch-HHhCCCeEEEEE
Confidence 100 0112223357789999999999984 47999999989999999999854321 112 225899999999
Q ss_pred EeeecCCCCccceeEEEeeccccccccccccccccccccCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEEccccCCCCc
Q 000176 1122 IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPS 1201 (1924)
Q Consensus 1122 l~~~~~~~~~~~~~~eLS~r~~~~~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~~~v~l~~~~~g~i~~~~~s~~~~ 1201 (1924)
+.++....+...+.+.||+|...-..........+++ +++|+.|+|+|.++.++|++|+++ +++|++|.++++|..
T Consensus 454 ~~~~~~~~~~~~~~iVlSrr~~l~e~~~~~~ee~~~~--l~~G~~V~G~Vk~i~~~G~fVdl~-Gv~Gfvp~SeiS~~~- 529 (863)
T PRK12269 454 ERISQSKQHRGNDNIVINRRRYLEERARQAREEFFNS--VHIEDSVSGVVKSFTSFGAFIDLG-GFDGLLHVNDMSWGH- 529 (863)
T ss_pred EEEecccccCCCCeEEEEHHHHHHHHHHHHHHHHHhc--CCCCCEEEEEEEEEeCCcEEEEEC-CEEEEEEchhccccc-
Confidence 9986321111234699999875432221000112444 589999999999999999999996 899999999999874
Q ss_pred hhhhhccccCCCCEEEEEEEEEeCCCcEEEEEecccccccccccccccccccccccCCCCEEEEEEEEEecCcCeEEEEe
Q 000176 1202 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1281 (1924)
Q Consensus 1202 ~~~~~~~~f~vG~~v~~~V~~vd~~~~~l~LS~~~~~~~~~~~~~~~~~~~~~~~i~~G~~v~g~V~~v~~~~~g~~V~l 1281 (1924)
+.++.+.|++||.++|+|+++|.+++++.||++... .++|....+.++ +|+++.|+|+++.++ |+||+|
T Consensus 530 -v~~~~~~~kvGq~v~vkVi~iD~e~~rI~LSlK~l~---~~p~~~~~~~~~-----vG~iV~G~V~~I~~f--G~fVeL 598 (863)
T PRK12269 530 -VARPREFVKKGQTIELKVIRLDQAEKRINLSLKHFQ---PDPWLEFENKFG-----VNDVVKGRVTKIADF--GAFIEL 598 (863)
T ss_pred -cCCHHHhccCCCEEEEEEEEEecCCCeEEEEEeccc---cchhhhhhccCC-----CCCEEEEEEEEEeCC--eEEEEe
Confidence 456777899999999999999999999999999864 577876666666 999999999999999 999999
Q ss_pred CCceEEEEecccccc-cccCCCCCCCCCCCEEEEEEEEEecccCCceEEEEeeeccccCCCCCCCCCCCCCCCCCcchhh
Q 000176 1282 GPHLYGRVHFTELKN-ICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1360 (1924)
Q Consensus 1282 ~~~~~G~v~~selsd-~~~~~p~~~~~~G~~v~~~Vl~vd~~~~~~~~i~LSlr~~~~~~~~~~~~~~~~~~~~~~~~~~ 1360 (1924)
++++.|++|++|++| ....+|.+.|++|+.|+|+|+++|.+ ++++.||+|... .+|| ..
T Consensus 599 ~~gveGLvhiSEls~~~~~~~p~~~~kvGd~V~vkVl~iD~e---~~rIsLS~K~l~-----~~Pw------------~~ 658 (863)
T PRK12269 599 AEGIEGLAHISEFSWVKKTSKPSDMVKIGDEVECMILGYDIQ---AGRVSLGLKQVT-----ANPW------------EE 658 (863)
T ss_pred cCCceeeeEHHHhcCccccCCHHHcCCCCCEEEEEEEEEecc---cCceEEEehhcc-----cCch------------HH
Confidence 999999999999987 45678889999999999999999986 689999999886 4554 23
Q ss_pred hhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccC-CCCccCCCCcEEEEEEEEEeCCCCEEEEEeecc
Q 000176 1361 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE-SPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439 (1924)
Q Consensus 1361 ~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~-~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~ 1439 (1924)
..+++++|+++.|+|++++++|+||+|+++++|+||+++++|.+.. .+...|++||.|+|+|+++|++++||.||+|+.
T Consensus 659 ~~~~~~vG~~v~G~V~~i~~~G~fV~l~~gV~GlIh~sels~~~~~~~~~~~~kvGq~VkvkVl~ID~e~rrI~LS~K~l 738 (863)
T PRK12269 659 IEARYPVGARFTRRIVKVTNAGAFIEMEEGIDGFLHVDDLSWVKRTRPADHELEVGKEIECMVIECDPQARRIRLGVKQL 738 (863)
T ss_pred HHHhCCCCCEEEEEEEEEecceEEEEeCCCcEEEEEhHHhhccccccchhhccCCCCEEEEEEEEEeccCCEEEEEeccc
Confidence 3457999999999999999999999999999999999999997654 445689999999999999999999999999998
Q ss_pred cccccchhccccccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCc---ccccCCCcEEEEEEEEE
Q 000176 1440 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI---ETIYRAGEKVKVKILKV 1516 (1924)
Q Consensus 1440 ~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~---~~~~~~Gd~Vk~~Vl~i 1516 (1924)
..+||.. ...++++|+++.|+|+++.+||+||+|.+ +++||+|+++++|++..+. .+.|++||.|+++|+++
T Consensus 739 ~~dpw~~----~~~~~~vG~iV~GkV~~v~~~GvFVeL~~-gVeGlI~~s~lsdd~~~~~~~~~~~f~vGD~V~v~Vl~i 813 (863)
T PRK12269 739 SDNPWQV----FANAYGVGSTVEGEVSSVTDFGIFVRVPG-GVEGLVRKQHLVENRDGDPGEALRKYAVGDRVKAVIVDM 813 (863)
T ss_pred ccChHHH----HHhhCCCCCEEEEEEEEEecCeEEEEcCC-CeEEEEEHHHcCCcccccchhhccccCCCCEEEEEEEEE
Confidence 8877654 24568999999999999999999999987 8999999999999875443 35699999999999999
Q ss_pred ecCCCeeEEecccc
Q 000176 1517 DKEKRRISLGMKSS 1530 (1924)
Q Consensus 1517 d~e~~ri~lslK~s 1530 (1924)
|+++++|.||+|++
T Consensus 814 D~~~rkI~LSlk~~ 827 (863)
T PRK12269 814 NVKDRKVAFSVRDY 827 (863)
T ss_pred EcCCCEEEEEEech
Confidence 99999999999985
|
|
| >PRK06299 rpsA 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-55 Score=571.18 Aligned_cols=507 Identities=22% Similarity=0.306 Sum_probs=428.3
Q ss_pred cccCCCcEEEEEEEEEeeeEEEEEecCCcceEEEEeeecCCCCCCCcccccCCCeEEEEEeccCCCCccchhhhhhhhcc
Q 000176 966 KDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS 1045 (1924)
Q Consensus 966 ~~l~~G~~v~g~V~~i~~~~v~vsl~~~~~~~g~~~~~~~~~~~~~~~~f~~Gq~v~~~V~~~~~~~~~~~~~l~~~~~~ 1045 (1924)
.+++.|+.++|+|..+++++++|++ +++..|++|.+++.. ..+...|.+|+.+.+.|..++ +..++++|+.+...
T Consensus 26 ~~~~~G~~v~G~V~~v~~~~~~Vdi--g~k~~g~lp~~e~~~-~~~~~~~~vG~~i~~~V~~~~--~~~~~i~lS~k~~~ 100 (565)
T PRK06299 26 SETREGSIVKGTVVAIDKDYVLVDV--GLKSEGRIPLEEFKN-EQGELEVKVGDEVEVYVERIE--DGFGETVLSREKAK 100 (565)
T ss_pred ccCCCCCEEEEEEEEEECCEEEEEe--CCCeEEEEEHHHhcC-ccccccCCCCCEEEEEEEEEE--CCCCcEEEechHHH
Confidence 4578999999999999999999999 788999999999962 223457999999999999986 44566655443211
Q ss_pred ccccccccccccCCCCCCCCeEEEEEEEEeCCeEEEEeCCCeeEEEEcccccCCccccccccccccCCCCEEEEEEEeee
Q 000176 1046 ETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 1125 (1924)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~l~V~l~~~~~G~i~~~e~~d~~~~~~~~p~~~~~~G~~v~~~Vl~~~ 1125 (1924)
. ...+......++.|++|+|+|+++.+.|+.|+++ +++|++|.+++.+... .++ .+.+|++++|+|+.++
T Consensus 101 ~----~~~~~~l~~~~~~g~~v~g~V~~~~~~G~~V~~~-g~~gfip~s~~~~~~~---~~~--~~~vG~~i~~~V~~~d 170 (565)
T PRK06299 101 R----LEAWDKLEKAFENGEIVEGVINGKVKGGFTVDLN-GVEAFLPGSQVDVRPV---RDT--DPLEGKELEFKVIKLD 170 (565)
T ss_pred H----HHHHHHHHHHhhCCCEEEEEEEEEECCEEEEEEC-CEEEEEEHHHccCcCC---CCh--HHhCCCEEEEEEEEEE
Confidence 0 0111222346778999999999999999999998 8999999999965431 222 2569999999999998
Q ss_pred cCCCCccceeEEEeeccccccccccccccccccccCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEEccccCCCCchhhh
Q 000176 1126 NKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1205 (1924)
Q Consensus 1126 ~~~~~~~~~~~eLS~r~~~~~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~~~v~l~~~~~g~i~~~~~s~~~~~~~~ 1205 (1924)
.. ...+.||+|+..-..........+.+ +++|+.+.|+|.++.++|++|+++ ++.|++|.++++|+. +.+
T Consensus 171 ~~-----~~~i~lS~k~~~~~~~~~~~~~~~~~--l~~G~iv~g~V~~v~~~G~~V~i~-g~~glv~~se~s~~~--~~~ 240 (565)
T PRK06299 171 KK-----RNNIVVSRRAVLEEERAEEREELLEN--LEEGQVVEGVVKNITDYGAFVDLG-GVDGLLHITDISWKR--VNH 240 (565)
T ss_pred CC-----CCEEEEEhHHhhhhhhhhHHHHHHhc--CCCCCEEEEEEEEEeCCeEEEEEC-CEEEEEEHHHhcccc--cCC
Confidence 32 23588999986532111000112333 699999999999999999999998 999999999999863 457
Q ss_pred hccccCCCCEEEEEEEEEeCCCcEEEEEecccccccccccccccccccccccCCCCEEEEEEEEEecCcCeEEEEeCCce
Q 000176 1206 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHL 1285 (1924)
Q Consensus 1206 ~~~~f~vG~~v~~~V~~vd~~~~~l~LS~~~~~~~~~~~~~~~~~~~~~~~i~~G~~v~g~V~~v~~~~~g~~V~l~~~~ 1285 (1924)
+.+.|++||.|.|+|+.+|.+++++.||++... .++|......++ +|+++.|+|+++.++ |+||+|++++
T Consensus 241 ~~~~~kvG~~v~v~V~~~d~~~~~i~lS~k~~~---~~p~~~~~~~~~-----~G~~v~g~V~~i~~~--G~fV~l~~~v 310 (565)
T PRK06299 241 PSEVVNVGDEVKVKVLKFDKEKKRVSLGLKQLG---EDPWEAIEKKYP-----VGSKVKGKVTNITDY--GAFVELEEGI 310 (565)
T ss_pred HhhcCCCCCEEEEEEEEEeCCCCeEEEEEEecc---cChhHHHHhhCC-----CCCEEEEEEEEEeCC--eEEEEeCCCC
Confidence 778899999999999999999999999999864 467876555666 999999999999999 9999999999
Q ss_pred EEEEecccccccc-cCCCCCCCCCCCEEEEEEEEEecccCCceEEEEeeeccccCCCCCCCCCCCCCCCCCcchhhhhcc
Q 000176 1286 YGRVHFTELKNIC-VSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364 (1924)
Q Consensus 1286 ~G~v~~selsd~~-~~~p~~~~~~G~~v~~~Vl~vd~~~~~~~~i~LSlr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1364 (1924)
.|++|++|++|+. ..+|...|++|+.|.|+|+++|.+ ++++.||+|++. .+|| .....+
T Consensus 311 ~Glv~~sel~~~~~~~~~~~~~~~G~~v~v~V~~id~~---~~~i~ls~k~~~-----~~p~------------~~~~~~ 370 (565)
T PRK06299 311 EGLVHVSEMSWTKKNKHPSKVVSVGQEVEVMVLEIDEE---KRRISLGLKQCK-----ENPW------------EEFAEK 370 (565)
T ss_pred EEEEEHHHcCccccccCHHHhcCCCCEEEEEEEEEcCC---CCEEEEehHHhc-----cchh------------hhHHHh
Confidence 9999999998753 456777899999999999999986 689999999886 3333 344567
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCccc-CCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecccccc
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1443 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~-~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~~ 1443 (1924)
+++|++|.|+|++++++|+||+|+.+++|++|+++++|.+. .+|.+.|++||.|+|+|+++|+++++|.||+|+...+|
T Consensus 371 ~~~G~~v~g~V~~v~~~G~fV~l~~~v~g~i~~s~l~~~~~~~~~~~~~~~Gd~v~v~Il~vd~~~~~i~ls~k~~~~~p 450 (565)
T PRK06299 371 YPVGDVVEGKVKNITDFGAFVGLEGGIDGLVHLSDISWDKKGEEAVELYKKGDEVEAVVLKVDVEKERISLGIKQLEEDP 450 (565)
T ss_pred CCCCCEEEEEEEEEecceEEEECCCCCEEEEEHHHcCccccccChHhhCCCCCEEEEEEEEEeCCCCEEEEEEehhhcCc
Confidence 89999999999999999999999999999999999999887 88999999999999999999999999999999998877
Q ss_pred cchhccccccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCee
Q 000176 1444 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1523 (1924)
Q Consensus 1444 ~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri 1523 (1924)
|.. ...++++|++|.|+|+++.++|+||.+.+ ++.||||.|++++.++.++.+.|++||.|+|+|+++|++++||
T Consensus 451 ~~~----~~~~~~~G~vV~G~V~~v~~~G~fV~l~~-gi~g~i~~se~s~~~~~~~~~~~~~Gd~v~~~V~~vd~~~~~i 525 (565)
T PRK06299 451 FEE----FAKKHKKGSIVTGTVTEVKDKGAFVELED-GVEGLIRASELSRDRVEDATEVLKVGDEVEAKVINIDRKNRRI 525 (565)
T ss_pred hhH----HHhhcCCCCEEEEEEEEEecCceEEecCC-CcEEEEEHHHhcchhccCccccCCCCCEEEEEEEEEccccCEE
Confidence 643 35679999999999999999999999986 8999999999999999999999999999999999999999999
Q ss_pred EEecccccc
Q 000176 1524 SLGMKSSYF 1532 (1924)
Q Consensus 1524 ~lslK~s~~ 1532 (1924)
+||+|++..
T Consensus 526 ~LS~k~~~~ 534 (565)
T PRK06299 526 SLSIKALDE 534 (565)
T ss_pred EEEeeehhh
Confidence 999999754
|
|
| >TIGR00717 rpsA ribosomal protein S1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-54 Score=558.76 Aligned_cols=501 Identities=21% Similarity=0.303 Sum_probs=420.4
Q ss_pred cccCCCcEEEEEEEEEeeeEEEEEecCCcceEEEEeeecCCCCCCCcccccCCCeEEEEEeccCCCCccchhhhhhhhcc
Q 000176 966 KDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS 1045 (1924)
Q Consensus 966 ~~l~~G~~v~g~V~~i~~~~v~vsl~~~~~~~g~~~~~~~~~~~~~~~~f~~Gq~v~~~V~~~~~~~~~~~~~l~~~~~~ 1045 (1924)
..+++|+.+.|+|..+++++++|++ +++..|++|.+++.. +...|++||.+.+.|..++ +..+++.|......
T Consensus 14 ~~~~~G~~v~g~V~~i~~~~~~v~~--g~k~~g~i~~~E~~~---~~~~~~vGd~i~~~V~~~~--~~~g~i~lS~~~~~ 86 (516)
T TIGR00717 14 EETRPGSIVKGTVVAINKDTVFVDV--GLKSEGRIPKEEFLD---APLEIQVGDEVEVYLDRVE--DRFGETVLSREKAQ 86 (516)
T ss_pred ccCCCCCEEEEEEEEEECCEEEEEc--CCCcEEEEEHHHhcC---CccCCCCCCEEEEEEEEEe--CCCCcEEEEHHHhh
Confidence 3588999999999999999999999 899999999999852 2257999999999999875 45667666444221
Q ss_pred ccccccccccccCCCCCCCCeEEEEEEEEeCCeEEEEeCCCeeEEEEcccccCCccccccccccccCCCCEEEEEEEeee
Q 000176 1046 ETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 1125 (1924)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~l~V~l~~~~~G~i~~~e~~d~~~~~~~~p~~~~~~G~~v~~~Vl~~~ 1125 (1924)
. ...+......+..|++++|+|.++.+.|+.|+++ +++|++|.+++.+... .+ ....+|++++|+|+.++
T Consensus 87 ~----~~~~~~l~~a~~~g~~v~g~V~~~~~~g~~V~i~-g~~~flP~s~~~~~~~---~~--~~~~vG~~i~~~v~~~~ 156 (516)
T TIGR00717 87 R----HELWIKLEKAYEEGSIVEGKIVGKVKGGFIVDLN-GVEAFLPGSQVDVKPI---KD--LDSLIGKTLKFKIIKLD 156 (516)
T ss_pred h----hHHHHHHHHHhhCCCeEEEEEEEEECCEEEEEEC-CEEEEEeHHHhcCccc---Cc--hhhhCCCEEEEEEEEEE
Confidence 1 0112222356789999999999999999999998 8999999999854321 11 24579999999999998
Q ss_pred cCCCCccceeEEEeeccccccccccccccccccccCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEEccccCCCCchhhh
Q 000176 1126 NKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1205 (1924)
Q Consensus 1126 ~~~~~~~~~~~eLS~r~~~~~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~~~v~l~~~~~g~i~~~~~s~~~~~~~~ 1205 (1924)
.+ ...+.||+|+.+...........++. +++|+.++|+|.++.++|+||+++ +++|++|.+++++.. ..+
T Consensus 157 ~~-----~~~iv~Srk~~l~~~~~~~~~~~~~~--l~~G~~v~g~V~~i~~~G~~V~l~-g~~g~lp~~e~s~~~--~~~ 226 (516)
T TIGR00717 157 QK-----RNNIVVSRRAYLEEERSQAREELLEN--LKEGDVVKGVVKNITDFGAFVDLG-GVDGLLHITDMSWKR--VKH 226 (516)
T ss_pred CC-----CCcEEEEHHHHHHHHHHHHHHHHHHh--ccCCCEEEEEEEEEECCeEEEEEC-CEEEEEEHHHcCCCC--CCC
Confidence 43 23588999986433211000112333 699999999999999999999996 799999999999864 356
Q ss_pred hccccCCCCEEEEEEEEEeCCCcEEEEEecccccccccccccccccccccccCCCCEEEEEEEEEecCcCeEEEEeCCce
Q 000176 1206 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHL 1285 (1924)
Q Consensus 1206 ~~~~f~vG~~v~~~V~~vd~~~~~l~LS~~~~~~~~~~~~~~~~~~~~~~~i~~G~~v~g~V~~v~~~~~g~~V~l~~~~ 1285 (1924)
+...|++|+.+.|+|+.+|.+++++.||++... .++|......++ +|+++.|+|+++.++ |+||++++++
T Consensus 227 ~~~~~~vG~~v~v~Vl~~d~~~~~i~lS~k~~~---~~p~~~~~~~~~-----~G~i~~g~V~~v~~~--G~fV~l~~~v 296 (516)
T TIGR00717 227 PSEYVKVGQEVKVKVIKFDKEKGRISLSLKQLG---EDPWEAIEKKFP-----VGDKITGRVTNLTDY--GVFVEIEEGI 296 (516)
T ss_pred HHHhccCCCEEEEEEEEEECCCCcEEEEEEecc---hhHHHHHHhhcc-----CCCEEEEEEEEeeCC--cEEEEeCCCC
Confidence 777899999999999999999999999999763 356765555565 999999999999999 9999999999
Q ss_pred EEEEecccccccc-cCCCCCCCCCCCEEEEEEEEEecccCCceEEEEeeeccccCCCCCCCCCCCCCCCCCcchhhhhcc
Q 000176 1286 YGRVHFTELKNIC-VSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364 (1924)
Q Consensus 1286 ~G~v~~selsd~~-~~~p~~~~~~G~~v~~~Vl~vd~~~~~~~~i~LSlr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1364 (1924)
.|++|++|+++++ ..+|...|++|+.++|+|+++|.+ ++++.||+|++. .+| +....++
T Consensus 297 ~g~v~~sels~~~~~~~~~~~~~vG~~v~v~V~~id~~---~~~i~lS~k~~~-----~~p------------~~~~~~~ 356 (516)
T TIGR00717 297 EGLVHVSEMSWVKKNSHPSKVVKKGDEVEVMILDIDPE---RRRLSLGLKQCK-----ANP------------WEQFEEK 356 (516)
T ss_pred EEEEEHHHcCCccccCCHHHhccCCCEEEEEEEEEcCC---CCEEEEEehhcc-----cCc------------HHHHHHh
Confidence 9999999998753 455667799999999999999986 679999999876 333 3444567
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCccc-CCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecccccc
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1443 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~-~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~~ 1443 (1924)
+++|++++|+|++++++|+||+|+++++|+||+++++|.+. .++...|++||.|.|+|+++|+++++|.||+|++..+|
T Consensus 357 ~~~G~~v~g~V~~v~~~G~fV~l~~~v~glv~~s~ls~~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~i~ls~K~~~~~p 436 (516)
T TIGR00717 357 HPVGDRVTGKIKKITDFGAFVELEGGIDGLIHLSDISWDKDGREADHLYKKGDEIEAVVLAVDKEKKRISLGVKQLTENP 436 (516)
T ss_pred CCCCCEEEEEEEEEecceEEEECCCCCEEEEEHHHCcCcccCCCHhHccCCCCEEEEEEEEEeCcCCEEEEeeccccCCc
Confidence 89999999999999999999999999999999999999865 46778899999999999999999999999999988877
Q ss_pred cchhccccccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCee
Q 000176 1444 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1523 (1924)
Q Consensus 1444 ~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri 1523 (1924)
|.. ...++++|+++.|+|+++++||+||+|++ ++.||||+|+++++++.++.+.|++||.|+++|+++|++++||
T Consensus 437 ~~~----~~~~~~~G~~v~g~V~~v~~~G~fV~l~~-~~~Glv~~s~l~~~~~~~~~~~~~~Gd~v~~~V~~id~~~~~i 511 (516)
T TIGR00717 437 WEK----FAAKYKVGSVVKGKVTEIKDFGAFVELPG-GVEGLIRNSELSENRDEDKTDEIKVGDEVEAKVVDIDKKNRKV 511 (516)
T ss_pred hhh----hhhccCcceEEEEEEEEEecceEEEEcCC-CeEEEEEHHHcCccccccccccCCCCCEEEEEEEEEeCCCCEE
Confidence 643 25679999999999999999999999986 7999999999999999999999999999999999999999999
Q ss_pred EEecc
Q 000176 1524 SLGMK 1528 (1924)
Q Consensus 1524 ~lslK 1528 (1924)
+||+|
T Consensus 512 ~ls~k 516 (516)
T TIGR00717 512 SLSVK 516 (516)
T ss_pred EEEEC
Confidence 99987
|
This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned. |
| >PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-54 Score=558.73 Aligned_cols=489 Identities=18% Similarity=0.270 Sum_probs=414.0
Q ss_pred CCCCCCCCeEEeeEEEEEeCCceEEEEcCCCCCccceEEeccchhhHHHHhhhhcccCCCEEEEEEEEEeecCCeEEEEe
Q 000176 402 PSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGIL 481 (1924)
Q Consensus 402 ~~~~~~G~iv~~~~V~~~~~~~G~~v~~~~~~~~~~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~~~d~~~~~s~ 481 (1924)
...+..|++++ ++|.+++.+ ++||+++.+. .|+++.+++. ..+++|++++|.|+..+. ++ +.||.
T Consensus 316 ~~~~~~G~iV~-G~Vv~i~~~-~v~VdiG~K~---eGiI~~~E~~--------~~~kvGd~i~~~V~~~~~-~~-~~LS~ 380 (863)
T PRK12269 316 FEAPEPGSVRM-GTVVQVNAG-TVFVDIGGKS---EGRVPVEEFE--------APPKAGDGVRVYVERVTP-YG-PELSK 380 (863)
T ss_pred cccCCCCCEEE-EEEEEEECC-EEEEEeCCCc---eEEeEHHHhc--------cCCCCCCEEEEEEEEEcC-Cc-eEEEe
Confidence 45688999998 799999998 8999998652 8999998773 237999999999999886 45 67886
Q ss_pred ecccccc-cccccccCCCCCeEEEEEEEEe--cCceEEEeCCCeEEeecCCCcccccccCCCCCCCCCCEEEEEEEEEeC
Q 000176 482 KASAFEG-LVFTHSDVKPGMVVKGKVIAVD--SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558 (1924)
Q Consensus 482 k~~~~~~-~~~~~~~l~~G~~v~g~V~~v~--~~G~~V~l~~~v~g~vp~~hlsd~~~~~p~~~f~vG~~vk~rVl~v~~ 558 (1924)
+...... +.--.+.+..|++|+|+|++++ +.|++|+++.+++||||.+|++.-...++. ..+|++++++|+.++.
T Consensus 381 ~~~~~~~~~~~l~~a~~~g~~V~G~Vv~v~~~kgG~~Vdig~~~~gfiP~se~~~~~~~~~~--~~vG~~ie~~V~~~~~ 458 (863)
T PRK12269 381 TKADRLGLKVKLRDAERDGTPVEGRIVRLTEKKSGFEVDLGAGMMAFLPISQSDCQKVDAPE--SLIGLTSKFYIERISQ 458 (863)
T ss_pred hHhhhhHHHHHHHHHHhCCCeEEEEEEEEEeecCEEEEEECCCcEEEEEHHHhccccccchH--HhCCCeEEEEEEEEec
Confidence 6443222 2222456789999999999985 469999998789999999998642222222 3499999999998832
Q ss_pred -------CeEEEEEccccccchhhHhh-hhcccCCCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCCCCCCCCCCC
Q 000176 559 -------KRITVTHKKTLVKSKLAILS-SYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY 630 (1924)
Q Consensus 559 -------~~l~lT~K~~Lv~~~~~~~~-~~~~~~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~~~~~~~~~~ 630 (1924)
++++||+|+.+.......+. .|+++++|+++.|+|.++.++|+||+| +|++||+|.|+++|.++.+|.+.|
T Consensus 459 ~~~~~~~~~iVlSrr~~l~e~~~~~~ee~~~~l~~G~~V~G~Vk~i~~~G~fVdl-~Gv~Gfvp~SeiS~~~v~~~~~~~ 537 (863)
T PRK12269 459 SKQHRGNDNIVINRRRYLEERARQAREEFFNSVHIEDSVSGVVKSFTSFGAFIDL-GGFDGLLHVNDMSWGHVARPREFV 537 (863)
T ss_pred ccccCCCCeEEEEHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEEEEeCCcEEEEE-CCEEEEEEchhccccccCCHHHhc
Confidence 48999999987654443333 367788999999999999999999999 789999999999999888999999
Q ss_pred CCCCEEEEEEEEEcCCCCEEEEEEeeCC-CCccc-ccccCCCCEEEEEEEEEccCcEEEEEEecCceeEEEeCCcCCCC-
Q 000176 631 HVGQVVKCRIMSSIPASRRINLSFMMKP-TRVSE-DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH- 707 (1924)
Q Consensus 631 ~vGq~v~~rVl~vd~~~~ri~lS~k~~~-~~~~~-~~~~~~G~iv~g~V~~~~~~g~~V~l~~~~~~~g~i~~~~Lsd~- 707 (1924)
++||+|+|+|+++|++++++.||+|+.. .+|.. .+.+++|++|+|+|++++++|++|++ .++++|+||.+++|+.
T Consensus 538 kvGq~v~vkVi~iD~e~~rI~LSlK~l~~~p~~~~~~~~~vG~iV~G~V~~I~~fG~fVeL--~~gveGLvhiSEls~~~ 615 (863)
T PRK12269 538 KKGQTIELKVIRLDQAEKRINLSLKHFQPDPWLEFENKFGVNDVVKGRVTKIADFGAFIEL--AEGIEGLAHISEFSWVK 615 (863)
T ss_pred cCCCEEEEEEEEEecCCCeEEEEEeccccchhhhhhccCCCCCEEEEEEEEEeCCeEEEEe--cCCceeeeEHHHhcCcc
Confidence 9999999999999999999999999753 34433 35689999999999999999999999 7799999999999862
Q ss_pred ccchhhhccccCCCCeEe-eEEEeecCCCeEEEEecccccchhccCCCCcCccCCCCEEEEEEEEEecCeEEEEECCCeE
Q 000176 708 LEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786 (1924)
Q Consensus 708 ~~~~~~~~~~~~~G~~i~-~vl~id~~~~~i~ls~K~sl~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~ 786 (1924)
...+ ..+.|++||+|+ +++.+|.+++++.||+|+...++|..+. +.+++|++++|+|++++++|+||++.+|+.
T Consensus 616 ~~~~--p~~~~kvGd~V~vkVl~iD~e~~rIsLS~K~l~~~Pw~~~~---~~~~vG~~v~G~V~~i~~~G~fV~l~~gV~ 690 (863)
T PRK12269 616 KTSK--PSDMVKIGDEVECMILGYDIQAGRVSLGLKQVTANPWEEIE---ARYPVGARFTRRIVKVTNAGAFIEMEEGID 690 (863)
T ss_pred ccCC--HHHcCCCCCEEEEEEEEEecccCceEEEehhcccCchHHHH---HhCCCCCEEEEEEEEEecceEEEEeCCCcE
Confidence 2122 345799999999 8999999999999999999999888753 457899999999999999999999999999
Q ss_pred EEecCCccCcccccC-cccCCCCCCEEEEEEEEeeCCCCeEEEeecccccCCCchhhHHHHHHHHHHHHHhhcccCCCcc
Q 000176 787 GFAPRSKAVDGQRAD-LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSE 865 (1924)
Q Consensus 787 Glv~~s~~s~~~~~~-~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1924)
||+|.++++|..... +...|++||.|+|+|+++|++++|+.||+|+... .||
T Consensus 691 GlIh~sels~~~~~~~~~~~~kvGq~VkvkVl~ID~e~rrI~LS~K~l~~---------------------------dpw 743 (863)
T PRK12269 691 GFLHVDDLSWVKRTRPADHELEVGKEIECMVIECDPQARRIRLGVKQLSD---------------------------NPW 743 (863)
T ss_pred EEEEhHHhhccccccchhhccCCCCEEEEEEEEEeccCCEEEEEeccccc---------------------------ChH
Confidence 999999999876544 4568999999999999999999999999997643 246
Q ss_pred ccccccccCccEEEEEEEEEecceeEEEeccCCceeEEEeeeecCCc----------ccccCCeEEEEEEEeeccccEEE
Q 000176 866 LKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA----------TVESGSVIQAAILDVAKAERLVD 935 (1924)
Q Consensus 866 ~~~~~~~~vG~~v~g~V~~i~~~g~~v~l~~~~~v~g~i~~~~l~~~----------~~~~G~~v~~~Vl~vd~~~~~v~ 935 (1924)
..+...+++|+.++|+|.++.++|++|++++ ++.|++|.+|+++. .+++||++++.|+.+|..++.+.
T Consensus 744 ~~~~~~~~vG~iV~GkV~~v~~~GvFVeL~~--gVeGlI~~s~lsdd~~~~~~~~~~~f~vGD~V~v~Vl~iD~~~rkI~ 821 (863)
T PRK12269 744 QVFANAYGVGSTVEGEVSSVTDFGIFVRVPG--GVEGLVRKQHLVENRDGDPGEALRKYAVGDRVKAVIVDMNVKDRKVA 821 (863)
T ss_pred HHHHhhCCCCCEEEEEEEEEecCeEEEEcCC--CeEEEEEHHHcCCcccccchhhccccCCCCEEEEEEEEEEcCCCEEE
Confidence 6667779999999999999999999999976 69999999999853 37899999999999999999999
Q ss_pred Eeechhhhh
Q 000176 936 LSLKTVFID 944 (1924)
Q Consensus 936 ls~k~~l~~ 944 (1924)
||+|+.-..
T Consensus 822 LSlk~~~~~ 830 (863)
T PRK12269 822 FSVRDYQRK 830 (863)
T ss_pred EEEechhhH
Confidence 999976654
|
|
| >PRK06299 rpsA 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-53 Score=548.84 Aligned_cols=496 Identities=22% Similarity=0.301 Sum_probs=425.4
Q ss_pred CCCCCCCeEEeeEEEEEeCCceEEEEcCCCCCccceEEeccchhhHHHHhhhhcccCCCEEEEEEEEEeecCCeEEEEee
Q 000176 403 SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILK 482 (1924)
Q Consensus 403 ~~~~~G~iv~~~~V~~~~~~~G~~v~~~~~~~~~~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~~~d~~~~~s~k 482 (1924)
..+..|++++ ++|.+++.+ |++|+++.+ +.||+|.+++++.+ ....|++|++++|+|+.++..++.+++|.+
T Consensus 26 ~~~~~G~~v~-G~V~~v~~~-~~~Vdig~k---~~g~lp~~e~~~~~---~~~~~~vG~~i~~~V~~~~~~~~~i~lS~k 97 (565)
T PRK06299 26 SETREGSIVK-GTVVAIDKD-YVLVDVGLK---SEGRIPLEEFKNEQ---GELEVKVGDEVEVYVERIEDGFGETVLSRE 97 (565)
T ss_pred ccCCCCCEEE-EEEEEEECC-EEEEEeCCC---eEEEEEHHHhcCcc---ccccCCCCCEEEEEEEEEECCCCcEEEech
Confidence 3467899997 899999998 999999743 38999999987532 123599999999999999998899999988
Q ss_pred cccccccccc-cccCCCCCeEEEEEEEEecCceEEEeCCCeEEeecCCCcccccccCCCCCCCCCCEEEEEEEEE--eCC
Q 000176 483 ASAFEGLVFT-HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSK 559 (1924)
Q Consensus 483 ~~~~~~~~~~-~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hlsd~~~~~p~~~f~vG~~vk~rVl~v--~~~ 559 (1924)
+.......-. .+.+++|++|+|+|+++.++|++|+++ ++.||+|.+|+++....++. +.+|++++|+|+.+ +++
T Consensus 98 ~~~~~~~~~~l~~~~~~g~~v~g~V~~~~~~G~~V~~~-g~~gfip~s~~~~~~~~~~~--~~vG~~i~~~V~~~d~~~~ 174 (565)
T PRK06299 98 KAKRLEAWDKLEKAFENGEIVEGVINGKVKGGFTVDLN-GVEAFLPGSQVDVRPVRDTD--PLEGKELEFKVIKLDKKRN 174 (565)
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEEEEEECCEEEEEEC-CEEEEEEHHHccCcCCCChH--HhCCCEEEEEEEEEECCCC
Confidence 6644332222 346788999999999999999999998 89999999999985444443 56999999999999 468
Q ss_pred eEEEEEccccccchhhHh-hhhcccCCCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCCCCCCCCCCCCCCCEEEE
Q 000176 560 RITVTHKKTLVKSKLAIL-SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC 638 (1924)
Q Consensus 560 ~l~lT~K~~Lv~~~~~~~-~~~~~~~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~~~~~~~~~~~vGq~v~~ 638 (1924)
++.||+|..+.......+ ..+.++++|+++.|+|+++.++|+||+++ |+.||+|.++++|.+..+|.+.|++||+|+|
T Consensus 175 ~i~lS~k~~~~~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~G~~V~i~-g~~glv~~se~s~~~~~~~~~~~kvG~~v~v 253 (565)
T PRK06299 175 NIVVSRRAVLEEERAEEREELLENLEEGQVVEGVVKNITDYGAFVDLG-GVDGLLHITDISWKRVNHPSEVVNVGDEVKV 253 (565)
T ss_pred EEEEEhHHhhhhhhhhHHHHHHhcCCCCCEEEEEEEEEeCCeEEEEEC-CEEEEEEHHHhcccccCCHhhcCCCCCEEEE
Confidence 999999998755433222 33567899999999999999999999995 8999999999999988899999999999999
Q ss_pred EEEEEcCCCCEEEEEEeeC-CCCccc-ccccCCCCEEEEEEEEEccCcEEEEEEecCceeEEEeCCcCCCCccchhhhcc
Q 000176 639 RIMSSIPASRRINLSFMMK-PTRVSE-DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKS 716 (1924)
Q Consensus 639 rVl~vd~~~~ri~lS~k~~-~~~~~~-~~~~~~G~iv~g~V~~~~~~g~~V~l~~~~~~~g~i~~~~Lsd~~~~~~~~~~ 716 (1924)
+|+++|++++++.||+++. ..+|.. .+.+++|+++.|+|++++++|++|.+ .+++.|+||..+|++.... .....
T Consensus 254 ~V~~~d~~~~~i~lS~k~~~~~p~~~~~~~~~~G~~v~g~V~~i~~~G~fV~l--~~~v~Glv~~sel~~~~~~-~~~~~ 330 (565)
T PRK06299 254 KVLKFDKEKKRVSLGLKQLGEDPWEAIEKKYPVGSKVKGKVTNITDYGAFVEL--EEGIEGLVHVSEMSWTKKN-KHPSK 330 (565)
T ss_pred EEEEEeCCCCeEEEEEEecccChhHHHHhhCCCCCEEEEEEEEEeCCeEEEEe--CCCCEEEEEHHHcCccccc-cCHHH
Confidence 9999999999999999975 335543 35789999999999999999999999 6789999999999863211 11234
Q ss_pred ccCCCCeEe-eEEEeecCCCeEEEEecccccchhccCCCCcCccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccC
Q 000176 717 VIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV 795 (1924)
Q Consensus 717 ~~~~G~~i~-~vl~id~~~~~i~ls~K~sl~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s 795 (1924)
.+++|+.++ +++.+|.+++++.||+|+++.++|.... .++++|+++.|.|++++++|+||++.+++.||+|.++++
T Consensus 331 ~~~~G~~v~v~V~~id~~~~~i~ls~k~~~~~p~~~~~---~~~~~G~~v~g~V~~v~~~G~fV~l~~~v~g~i~~s~l~ 407 (565)
T PRK06299 331 VVSVGQEVEVMVLEIDEEKRRISLGLKQCKENPWEEFA---EKYPVGDVVEGKVKNITDFGAFVGLEGGIDGLVHLSDIS 407 (565)
T ss_pred hcCCCCEEEEEEEEEcCCCCEEEEehHHhccchhhhHH---HhCCCCCEEEEEEEEEecceEEEECCCCCEEEEEHHHcC
Confidence 689999999 7889999999999999999888776533 447889999999999999999999998999999999999
Q ss_pred cccc-cCcccCCCCCCEEEEEEEEeeCCCCeEEEeecccccCCCchhhHHHHHHHHHHHHHhhcccCCCccccccccccC
Q 000176 796 DGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII 874 (1924)
Q Consensus 796 ~~~~-~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 874 (1924)
+.+. .++.+.|++||.|+|+|+++|++++|+.||+|++.. +||..+...+++
T Consensus 408 ~~~~~~~~~~~~~~Gd~v~v~Il~vd~~~~~i~ls~k~~~~---------------------------~p~~~~~~~~~~ 460 (565)
T PRK06299 408 WDKKGEEAVELYKKGDEVEAVVLKVDVEKERISLGIKQLEE---------------------------DPFEEFAKKHKK 460 (565)
T ss_pred ccccccChHhhCCCCCEEEEEEEEEeCCCCEEEEEEehhhc---------------------------CchhHHHhhcCC
Confidence 8776 788899999999999999999999999999997743 345566778999
Q ss_pred ccEEEEEEEEEecceeEEEeccCCceeEEEeeeecCCc-------ccccCCeEEEEEEEeeccccEEEEeechhhhhh
Q 000176 875 GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA-------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDR 945 (1924)
Q Consensus 875 G~~v~g~V~~i~~~g~~v~l~~~~~v~g~i~~~~l~~~-------~~~~G~~v~~~Vl~vd~~~~~v~ls~k~~l~~~ 945 (1924)
|+.|.|+|..+.++|++|.+.+ ++.|++|.+++++. .+++||.++|+|+.+|..++.+.||+|+.....
T Consensus 461 G~vV~G~V~~v~~~G~fV~l~~--gi~g~i~~se~s~~~~~~~~~~~~~Gd~v~~~V~~vd~~~~~i~LS~k~~~~~~ 536 (565)
T PRK06299 461 GSIVTGTVTEVKDKGAFVELED--GVEGLIRASELSRDRVEDATEVLKVGDEVEAKVINIDRKNRRISLSIKALDEAE 536 (565)
T ss_pred CCEEEEEEEEEecCceEEecCC--CcEEEEEHHHhcchhccCccccCCCCCEEEEEEEEEccccCEEEEEeeehhhhh
Confidence 9999999999999999999974 79999999999753 579999999999999999999999999876644
|
|
| >TIGR00717 rpsA ribosomal protein S1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-52 Score=538.46 Aligned_cols=490 Identities=22% Similarity=0.292 Sum_probs=419.9
Q ss_pred cccCCCceEEEEEEEEecCeEEEEecCceEEEEeccccCCCCCCCCccccCCCCCEEEEEEEEEeCCCceEEEeeCcccc
Q 000176 317 DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396 (1924)
Q Consensus 317 ~~l~pG~~v~~~V~~v~~~Gl~v~~~~~~~g~v~~~hl~~~~~~~~~~~~~~~G~~v~arVl~~~~~~k~v~lSl~p~~~ 396 (1924)
..+.||++|.|+|.+|.++|+.|+|++..+|+++..+++... ..|++|+.+.++|+.+.+...++.||+.+...
T Consensus 14 ~~~~~G~~v~g~V~~i~~~~~~v~~g~k~~g~i~~~E~~~~~------~~~~vGd~i~~~V~~~~~~~g~i~lS~~~~~~ 87 (516)
T TIGR00717 14 EETRPGSIVKGTVVAINKDTVFVDVGLKSEGRIPKEEFLDAP------LEIQVGDEVEVYLDRVEDRFGETVLSREKAQR 87 (516)
T ss_pred ccCCCCCEEEEEEEEEECCEEEEEcCCCcEEEEEHHHhcCCc------cCCCCCCEEEEEEEEEeCCCCcEEEEHHHhhh
Confidence 458999999999999999999999999999999999887532 46999999999999998888899999986542
Q ss_pred c--cCCCCCCCCCCCeEEeeEEEEEeCCceEEEEcCCCCCccceEEeccchhhHHHHhhhhcccCCCEEEEEEEEEeecC
Q 000176 397 H--NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 474 (1924)
Q Consensus 397 ~--~~~~~~~~~~G~iv~~~~V~~~~~~~G~~v~~~~~~~~~~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~~~d 474 (1924)
. |.....++..|.+++ ++|.++..+ |++|+++ .++||+|.+++........ .+.+|++++|+|+.++...
T Consensus 88 ~~~~~~l~~a~~~g~~v~-g~V~~~~~~-g~~V~i~----g~~~flP~s~~~~~~~~~~--~~~vG~~i~~~v~~~~~~~ 159 (516)
T TIGR00717 88 HELWIKLEKAYEEGSIVE-GKIVGKVKG-GFIVDLN----GVEAFLPGSQVDVKPIKDL--DSLIGKTLKFKIIKLDQKR 159 (516)
T ss_pred hHHHHHHHHHhhCCCeEE-EEEEEEECC-EEEEEEC----CEEEEEeHHHhcCcccCch--hhhCCCEEEEEEEEEECCC
Confidence 2 222234678999998 789999988 9999997 2489999999864322222 3679999999999999988
Q ss_pred CeEEEEeecccccc----cccccccCCCCCeEEEEEEEEecCceEEEeCCCeEEeecCCCcccccccCCCCCCCCCCEEE
Q 000176 475 GLATGILKASAFEG----LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550 (1924)
Q Consensus 475 ~~~~~s~k~~~~~~----~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hlsd~~~~~p~~~f~vG~~vk 550 (1924)
+.+++|.++..-+. ....+.++++|++|+|+|+++.++|++|+++ +++||+|.+++++.+..+|...|++|++|+
T Consensus 160 ~~iv~Srk~~l~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~G~~V~l~-g~~g~lp~~e~s~~~~~~~~~~~~vG~~v~ 238 (516)
T TIGR00717 160 NNIVVSRRAYLEEERSQAREELLENLKEGDVVKGVVKNITDFGAFVDLG-GVDGLLHITDMSWKRVKHPSEYVKVGQEVK 238 (516)
T ss_pred CcEEEEHHHHHHHHHHHHHHHHHHhccCCCEEEEEEEEEECCeEEEEEC-CEEEEEEHHHcCCCCCCCHHHhccCCCEEE
Confidence 99999977543221 1234678999999999999999999999996 799999999999988888888999999999
Q ss_pred EEEEEE--eCCeEEEEEccccccchhhHhhhh-cccCCCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCC-CCCCC
Q 000176 551 FRVLGV--KSKRITVTHKKTLVKSKLAILSSY-AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD-PGCEP 626 (1924)
Q Consensus 551 ~rVl~v--~~~~l~lT~K~~Lv~~~~~~~~~~-~~~~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~-~~~~~ 626 (1924)
|+|+++ +++++.||+|....+ +|..+ +.+++|+++.|+|+++.++|+||++.+++.||+|.+++++. ...+|
T Consensus 239 v~Vl~~d~~~~~i~lS~k~~~~~----p~~~~~~~~~~G~i~~g~V~~v~~~G~fV~l~~~v~g~v~~sels~~~~~~~~ 314 (516)
T TIGR00717 239 VKVIKFDKEKGRISLSLKQLGED----PWEAIEKKFPVGDKITGRVTNLTDYGVFVEIEEGIEGLVHVSEMSWVKKNSHP 314 (516)
T ss_pred EEEEEEECCCCcEEEEEEecchh----HHHHHHhhccCCCEEEEEEEEeeCCcEEEEeCCCCEEEEEHHHcCCccccCCH
Confidence 999999 467899999987544 23443 35789999999999999999999999999999999999875 34566
Q ss_pred CCCCCCCCEEEEEEEEEcCCCCEEEEEEeeCC-CCcc-cccccCCCCEEEEEEEEEccCcEEEEEEecCceeEEEeCCcC
Q 000176 627 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKP-TRVS-EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704 (1924)
Q Consensus 627 ~~~~~vGq~v~~rVl~vd~~~~ri~lS~k~~~-~~~~-~~~~~~~G~iv~g~V~~~~~~g~~V~l~~~~~~~g~i~~~~L 704 (1924)
.+.|++||.|+|+|+++|++++++.||+++.. .++. ..+.+++|++++|+|++++++|++|.+ .+++.|+||..+|
T Consensus 315 ~~~~~vG~~v~v~V~~id~~~~~i~lS~k~~~~~p~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l--~~~v~glv~~s~l 392 (516)
T TIGR00717 315 SKVVKKGDEVEVMILDIDPERRRLSLGLKQCKANPWEQFEEKHPVGDRVTGKIKKITDFGAFVEL--EGGIDGLIHLSDI 392 (516)
T ss_pred HHhccCCCEEEEEEEEEcCCCCEEEEEehhcccCcHHHHHHhCCCCCEEEEEEEEEecceEEEEC--CCCCEEEEEHHHC
Confidence 67899999999999999999999999998753 3443 224688999999999999999999999 6799999999999
Q ss_pred CCCccchhhhccccCCCCeEe-eEEEeecCCCeEEEEecccccchhccCCCCcCccCCCCEEEEEEEEEecCeEEEEECC
Q 000176 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 783 (1924)
Q Consensus 705 sd~~~~~~~~~~~~~~G~~i~-~vl~id~~~~~i~ls~K~sl~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~ 783 (1924)
++.... ....+.+++|+.+. +++.+|++++++.||+|+++.++|... .+++++|+++.|+|++++++|+||++.+
T Consensus 393 s~~~~~-~~~~~~~~~G~~V~~~Vl~vd~~~~~i~ls~K~~~~~p~~~~---~~~~~~G~~v~g~V~~v~~~G~fV~l~~ 468 (516)
T TIGR00717 393 SWDKDG-READHLYKKGDEIEAVVLAVDKEKKRISLGVKQLTENPWEKF---AAKYKVGSVVKGKVTEIKDFGAFVELPG 468 (516)
T ss_pred cCcccC-CCHhHccCCCCEEEEEEEEEeCcCCEEEEeeccccCCchhhh---hhccCcceEEEEEEEEEecceEEEEcCC
Confidence 974321 11346899999999 789999999999999999988887543 3568899999999999999999999999
Q ss_pred CeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeec
Q 000176 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831 (1924)
Q Consensus 784 ~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk 831 (1924)
++.||+|.+++++++..++.+.|++||.|+|+|+++|.+++|+.||+|
T Consensus 469 ~~~Glv~~s~l~~~~~~~~~~~~~~Gd~v~~~V~~id~~~~~i~ls~k 516 (516)
T TIGR00717 469 GVEGLIRNSELSENRDEDKTDEIKVGDEVEAKVVDIDKKNRKVSLSVK 516 (516)
T ss_pred CeEEEEEHHHcCccccccccccCCCCCEEEEEEEEEeCCCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999986
|
This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned. |
| >PRK13806 rpsA 30S ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-51 Score=519.01 Aligned_cols=419 Identities=19% Similarity=0.284 Sum_probs=360.3
Q ss_pred CCCCCCCeEEEEEEEEeCCeEEEEeCCCeeEEEEcccccCCccccccccccccCCCCEEEEEEEeeecCCCCccceeEEE
Q 000176 1059 SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWEL 1138 (1924)
Q Consensus 1059 ~~~~~G~~v~g~V~~v~~~~l~V~l~~~~~G~i~~~e~~d~~~~~~~~p~~~~~~G~~v~~~Vl~~~~~~~~~~~~~~eL 1138 (1924)
..+.+|++|+|+|++|.+++++|+++.+.+|+|+.+|+.+.+.+ ..+++|++|+|+|++++. ..+.|
T Consensus 30 ~~~~~G~~v~G~V~~v~~~~v~Vdig~k~eg~ip~~e~~~~~~~------~~~~~G~~i~~~Vi~~~~-------~~~~l 96 (491)
T PRK13806 30 TELRVGDKITGTVIAITEDSVFVDTGSKVDGVVDRAELLDADGE------LTVAVGDEVELYVVSVNG-------QEIRL 96 (491)
T ss_pred ccCCCCCEEEEEEEEEECCEEEEEECCCcEEEEEHHHhcCcccc------ccccCCCEEEEEEEEEcC-------CEEEE
Confidence 34889999999999999999999999999999999999754321 357999999999999861 24788
Q ss_pred eeccccccccccccccccccccCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEEccccCCCCchhhhhccccCCCCEEEE
Q 000176 1139 SIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG 1218 (1924)
Q Consensus 1139 S~r~~~~~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~~~v~l~~~~~g~i~~~~~s~~~~~~~~~~~~f~vG~~v~~ 1218 (1924)
|++... ...+ ..+.+ .++.|+.++|+|.++.++|++|++. +++|++|.+++++.. ..++.. + +|+.++|
T Consensus 97 S~~~~~-~~~~----~~l~~-~~~~g~~v~g~V~~~~~~G~~V~i~-g~~~flP~s~~~~~~--~~~~~~-~-vG~~i~~ 165 (491)
T PRK13806 97 SKALSG-QGGA----AMLEE-AYENGVPVEGKVTGTCKGGFNVEVL-GRRAFCPVSQIDLRY--VEDPES-Y-VGQTFQF 165 (491)
T ss_pred EhHHhh-hhhH----HHHHH-HHhCCCEEEEEEEEEEcCCEEEEEC-CEEEEEEHHHhcccc--CCChHH-c-CCCeEEE
Confidence 966431 1111 11222 2689999999999999999999998 899999999988753 223332 3 9999999
Q ss_pred EEEEEeCCCcEEEEEeccccccc-ccccccccccccccccCCCCEEEEEEEEEecCcCeEEEEeCCceEEEEeccccccc
Q 000176 1219 HVLSINKEKKLLRLVLRPFQDGI-SDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1297 (1924)
Q Consensus 1219 ~V~~vd~~~~~l~LS~~~~~~~~-~~~~~~~~~~~~~~~i~~G~~v~g~V~~v~~~~~g~~V~l~~~~~G~v~~selsd~ 1297 (1924)
+|+.+|.+++++.||++...... ...|...+.+++ +|+++.|+|+++.++ |+||+|++++.|+||++|++|+
T Consensus 166 ~V~~id~~~~~v~lSrk~~~~~~~~~~~~~~~~~l~-----~G~iv~G~V~~v~~~--G~fV~l~~gv~g~v~~sels~~ 238 (491)
T PRK13806 166 LITRVEENGRNIVVSRRALLEREQKEALEAFMETVK-----EGDVVEGTVTRLAPF--GAFVELAPGVEGMVHISELSWS 238 (491)
T ss_pred EEEEEECCCCeEEEEeehhhhhhhHHHHHHHHhhCC-----CCCEEEEEEEEEeCC--eEEEEcCCCcEEEEEHHHCCCc
Confidence 99999999999999998875332 244544444555 999999999999999 9999999899999999999999
Q ss_pred ccCCCCCCCCCCCEEEEEEEEEecccCC-ceEEEEeeeccccCCCCCCCCCCCCCCCCCcchhhhhccCCCCCEEEEEEE
Q 000176 1298 CVSDPLSGYDEGQFVKCKVLEISRTVRG-TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376 (1924)
Q Consensus 1298 ~~~~p~~~~~~G~~v~~~Vl~vd~~~~~-~~~i~LSlr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~G~~v~G~V~ 1376 (1924)
+..+|...|++|+.|+|+|+++|.+.++ .+++.||+|+.. .+|| .....++++|+++.|+|+
T Consensus 239 ~~~~~~~~~~vGd~i~vkVl~id~~~~~~~~ri~lS~K~~~-----~~p~------------~~~~~~~~~G~~v~G~V~ 301 (491)
T PRK13806 239 RVQKADEAVSVGDTVRVKVLGIERAKKGKGLRISLSIKQAG-----GDPW------------DTVGDRLKAGDKVTGKVV 301 (491)
T ss_pred cccChhHhcCCCCEEEEEEEEEecccCCcceEEEEEehhhh-----cccc------------hhhhccCCCCCEEEEEEE
Confidence 9999999999999999999999976210 158999999986 4443 444568999999999999
Q ss_pred EEeeceEEEEeCCCcEEEEECccCCC-cccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecccccccchhcccccccc
Q 000176 1377 NVTSKGCFIMLSRKLDAKVLLSNLSD-GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1455 (1924)
Q Consensus 1377 ~v~~~G~fV~l~~~v~g~v~~selsd-~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~~~~~~~~~~~~~l 1455 (1924)
++.++|+||+|+++++|+||+++|+| .++.+|.+.|++||.|+++|+++|+++++|.||+|+...+||... ..++
T Consensus 302 ~v~~~G~fV~l~~gv~Glvh~sels~~~~~~~~~~~~~~Gd~v~vkVl~iD~e~~ri~Ls~K~~~~~p~~~~----~~~~ 377 (491)
T PRK13806 302 RLAPFGAFVEILPGIEGLVHVSEMSWTRRVNKPEDVVAPGDAVAVKIKDIDPAKRRISLSLRDAEGDPWADV----AERF 377 (491)
T ss_pred EEeCceEEEEeCCCcEEEEEHHHcCcccccCCHHHcCCCCCEEEEEEEEEEccCCEEEEEEeecccChhHHh----hhhC
Confidence 99999999999999999999999999 467889999999999999999999999999999999988887543 5689
Q ss_pred CCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
++|++|+|+|+++.+||+||+|.+ ++.||||+|+++|.+..++.+.|++||.|+|+|+++|++++||+||+|..
T Consensus 378 ~vG~~v~G~V~~i~~~G~FV~l~~-gv~Gli~~se~s~~~~~~~~~~~~~Gd~v~~~V~~id~e~~ri~Ls~~~~ 451 (491)
T PRK13806 378 APGTTVTGTVEKRAQFGLFVNLAP-GVTGLLPASVISRAGKPATYEKLKPGDSVTLVVEEIDTAKRKISLAPAGA 451 (491)
T ss_pred CCCCEEEEEEEEEecCceEEEcCC-CcEEEEEHHHcCcccccchhhcCCCCCEEEEEEEEEeCCCCEEEEEeehh
Confidence 999999999999999999999987 89999999999999998899999999999999999999999999999963
|
|
| >PRK13806 rpsA 30S ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-46 Score=473.46 Aligned_cols=411 Identities=20% Similarity=0.284 Sum_probs=351.2
Q ss_pred CCCCCCeEEeeEEEEEeCCceEEEEcCCCCCccceEEeccchhhHHHHhhhhcccCCCEEEEEEEEEeecCCeEEEEeec
Q 000176 404 HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKA 483 (1924)
Q Consensus 404 ~~~~G~iv~~~~V~~~~~~~G~~v~~~~~~~~~~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~~~d~~~~~s~k~ 483 (1924)
.+.+|++++ ++|++++.+ |++|+++.+. .||+|.+++.+.. ....|++|++++|+|++++. +.+.+|.+.
T Consensus 31 ~~~~G~~v~-G~V~~v~~~-~v~Vdig~k~---eg~ip~~e~~~~~---~~~~~~~G~~i~~~Vi~~~~--~~~~lS~~~ 100 (491)
T PRK13806 31 ELRVGDKIT-GTVIAITED-SVFVDTGSKV---DGVVDRAELLDAD---GELTVAVGDEVELYVVSVNG--QEIRLSKAL 100 (491)
T ss_pred cCCCCCEEE-EEEEEEECC-EEEEEECCCc---EEEEEHHHhcCcc---ccccccCCCEEEEEEEEEcC--CEEEEEhHH
Confidence 378999998 789999998 9999998542 8999998886431 12349999999999999874 457777543
Q ss_pred ccccccccccccCCCCCeEEEEEEEEecCceEEEeCCCeEEeecCCCcccccccCCCCCCCCCCEEEEEEEEE--eCCeE
Q 000176 484 SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRI 561 (1924)
Q Consensus 484 ~~~~~~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hlsd~~~~~p~~~f~vG~~vk~rVl~v--~~~~l 561 (1924)
.....+..-.+.+.+|++|+|+|+++.++|++|++. ++.||+|.+|+++....+|.. | +|++++|+|+.+ +++++
T Consensus 101 ~~~~~~~~l~~~~~~g~~v~g~V~~~~~~G~~V~i~-g~~~flP~s~~~~~~~~~~~~-~-vG~~i~~~V~~id~~~~~v 177 (491)
T PRK13806 101 SGQGGAAMLEEAYENGVPVEGKVTGTCKGGFNVEVL-GRRAFCPVSQIDLRYVEDPES-Y-VGQTFQFLITRVEENGRNI 177 (491)
T ss_pred hhhhhHHHHHHHHhCCCEEEEEEEEEEcCCEEEEEC-CEEEEEEHHHhccccCCChHH-c-CCCeEEEEEEEEECCCCeE
Confidence 221222223567889999999999999999999997 799999999998866666664 4 999999999999 35799
Q ss_pred EEEEccccccchhhHhhh-hcccCCCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCCCCCCCCCCCCCCCEEEEEE
Q 000176 562 TVTHKKTLVKSKLAILSS-YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI 640 (1924)
Q Consensus 562 ~lT~K~~Lv~~~~~~~~~-~~~~~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~~~~~~~~~~~vGq~v~~rV 640 (1924)
.||+|..+.......+.. +..+++|+++.|+|+++.++|+||++++++.||+|.+++++....+|.+.|++||.|+|+|
T Consensus 178 ~lSrk~~~~~~~~~~~~~~~~~l~~G~iv~G~V~~v~~~G~fV~l~~gv~g~v~~sels~~~~~~~~~~~~vGd~i~vkV 257 (491)
T PRK13806 178 VVSRRALLEREQKEALEAFMETVKEGDVVEGTVTRLAPFGAFVELAPGVEGMVHISELSWSRVQKADEAVSVGDTVRVKV 257 (491)
T ss_pred EEEeehhhhhhhHHHHHHHHhhCCCCCEEEEEEEEEeCCeEEEEcCCCcEEEEEHHHCCCccccChhHhcCCCCEEEEEE
Confidence 999998776544444444 4467899999999999999999999988999999999999998889999999999999999
Q ss_pred EEEcCCC----CEEEEEEeeCC-CCccc-ccccCCCCEEEEEEEEEccCcEEEEEEecCceeEEEeCCcCCCCccchhhh
Q 000176 641 MSSIPAS----RRINLSFMMKP-TRVSE-DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714 (1924)
Q Consensus 641 l~vd~~~----~ri~lS~k~~~-~~~~~-~~~~~~G~iv~g~V~~~~~~g~~V~l~~~~~~~g~i~~~~Lsd~~~~~~~~ 714 (1924)
+++|+++ +|+.||+|+.. .+|.. .+.+++|++++|+|+.++++|+||++ .++++|+||.++|++.... ...
T Consensus 258 l~id~~~~~~~~ri~lS~K~~~~~p~~~~~~~~~~G~~v~G~V~~v~~~G~fV~l--~~gv~Glvh~sels~~~~~-~~~ 334 (491)
T PRK13806 258 LGIERAKKGKGLRISLSIKQAGGDPWDTVGDRLKAGDKVTGKVVRLAPFGAFVEI--LPGIEGLVHVSEMSWTRRV-NKP 334 (491)
T ss_pred EEEecccCCcceEEEEEehhhhcccchhhhccCCCCCEEEEEEEEEeCceEEEEe--CCCcEEEEEHHHcCccccc-CCH
Confidence 9999886 48999998763 34543 36789999999999999999999999 7789999999999863211 223
Q ss_pred ccccCCCCeEe-eEEEeecCCCeEEEEecccccchhccCCCCcCccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCc
Q 000176 715 KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 793 (1924)
Q Consensus 715 ~~~~~~G~~i~-~vl~id~~~~~i~ls~K~sl~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~ 793 (1924)
.+.+++||.++ +++.+|++++++.||+|+...++|.... +++++|++++|+|+++++||+||++.+|+.||||+|+
T Consensus 335 ~~~~~~Gd~v~vkVl~iD~e~~ri~Ls~K~~~~~p~~~~~---~~~~vG~~v~G~V~~i~~~G~FV~l~~gv~Gli~~se 411 (491)
T PRK13806 335 EDVVAPGDAVAVKIKDIDPAKRRISLSLRDAEGDPWADVA---ERFAPGTTVTGTVEKRAQFGLFVNLAPGVTGLLPASV 411 (491)
T ss_pred HHcCCCCCEEEEEEEEEEccCCEEEEEEeecccChhHHhh---hhCCCCCEEEEEEEEEecCceEEEcCCCcEEEEEHHH
Confidence 56799999999 8889999999999999999999888754 4688999999999999999999999999999999999
Q ss_pred cCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeeccc
Q 000176 794 AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833 (1924)
Q Consensus 794 ~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~ 833 (1924)
+++++..++.+.|++||.|+|+|+++|++++|++||++..
T Consensus 412 ~s~~~~~~~~~~~~~Gd~v~~~V~~id~e~~ri~Ls~~~~ 451 (491)
T PRK13806 412 ISRAGKPATYEKLKPGDSVTLVVEEIDTAKRKISLAPAGA 451 (491)
T ss_pred cCcccccchhhcCCCCCEEEEEEEEEeCCCCEEEEEeehh
Confidence 9999999999999999999999999999999999999965
|
|
| >PRK07899 rpsA 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=438.74 Aligned_cols=333 Identities=27% Similarity=0.392 Sum_probs=294.0
Q ss_pred CCCCCEEEEEEEEEECCeEEEEeCCCeEEEEEccccCCCCchhhhhccccCCCCEEEEEEEEEeCCCcEEEEEecccccc
Q 000176 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1240 (1924)
Q Consensus 1161 ~~~G~~v~g~V~~v~~~~~~v~l~~~~~g~i~~~~~s~~~~~~~~~~~~f~vG~~v~~~V~~vd~~~~~l~LS~~~~~~~ 1240 (1924)
++.|++|+|+|.++.++++||++++.++|+||..++++.. ..++...|++|+.|+|+|+++++.++++.||++....
T Consensus 33 ~~~GdiV~G~V~~v~~~gv~VdIg~k~eG~Ip~~Els~~~--~~~~~~~~~vGd~Ie~~V~~~~~~~g~liLS~k~~~~- 109 (486)
T PRK07899 33 FNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKH--DVDPNEVVEVGDEVEALVLQKEDKEGRLILSKKRAQY- 109 (486)
T ss_pred CCCCCEEEEEEEEEECCcEEEEECCCcEEEEEHHHhcccc--cCChhhcCCCCCEEEEEEEEEECCCCeEEEEehhhcc-
Confidence 6999999999999999999999999999999999999854 3467778999999999999999999999999998642
Q ss_pred cccccccccccccccccCCCCEEEEEEEEEecCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCEEEEEEEEEe
Q 000176 1241 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEIS 1320 (1924)
Q Consensus 1241 ~~~~~~~~~~~~~~~~i~~G~~v~g~V~~v~~~~~g~~V~l~~~~~G~v~~selsd~~~~~p~~~~~~G~~v~~~Vl~vd 1320 (1924)
..+|....+.++ .|+++.|+|+++.++ |++|++ |+.|++|.+++++.+..++.. | +|+.|+|+|+++|
T Consensus 110 -~~~w~~ie~~~e-----~g~~V~G~V~~v~k~--G~~Vdl--Gi~gflP~Sel~~~~~~~~~~-~-vGq~V~vkVleid 177 (486)
T PRK07899 110 -ERAWGTIEKIKE-----KDGVVTGTVIEVVKG--GLILDI--GLRGFLPASLVEMRRVRDLQP-Y-IGQEIEAKIIELD 177 (486)
T ss_pred -cchHHHHHHHhc-----CCCEEEEEEEEEECC--eEEEEE--CCEEEEEhhHhcccccCChhh-c-CCCEEEEEEEEEE
Confidence 345654444444 899999999999998 999999 589999999998876666543 3 8999999999999
Q ss_pred cccCCceEEEEeeeccccCCCCCCCCCCCCCCCCCcchhhhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccC
Q 000176 1321 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1400 (1924)
Q Consensus 1321 ~~~~~~~~i~LSlr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~sel 1400 (1924)
.+ ++++.||+|... .... ..++...+.++++|+++.|+|++++++|+||+|+ +++||||+++|
T Consensus 178 ~~---~~~ivLSrr~~l-----~~~~--------~~~~~~~~~~lk~G~iv~G~V~~i~~~G~FVdlg-gv~Glv~~Sel 240 (486)
T PRK07899 178 KN---RNNVVLSRRAWL-----EQTQ--------SEVRSEFLNQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSEL 240 (486)
T ss_pred CC---CCEEEEEhHHHH-----Hhhh--------HHHHHHHHHhccCCCEEEEEEEEEECCeEEEEEC-CEEEEEEHHHC
Confidence 86 679999999754 1000 1223455678999999999999999999999997 79999999999
Q ss_pred CCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecccccccchhccccccccCCCcEEEEEEEEeecceEEEEEecC
Q 000176 1401 SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1480 (1924)
Q Consensus 1401 sd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~ 1480 (1924)
+|.++.+|.+.|++||.|+++|+++|++++||.||+|+...+||.. ....+++|+++.|+|+++.+||+||+|.+
T Consensus 241 s~~~v~~~~~~~kvGd~V~vkVl~iD~e~~rI~LSlK~~~~dPw~~----~~~~~~vG~vv~G~V~~I~~fGvFVeL~~- 315 (486)
T PRK07899 241 SWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ----FARTHAIGQIVPGKVTKLVPFGAFVRVEE- 315 (486)
T ss_pred CCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeeccccchhh----hHHhcCCCCEEEEEEEEEeccEEEEEeCC-
Confidence 9999999999999999999999999999999999999998888743 24568899999999999999999999986
Q ss_pred ceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1481 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1481 ~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
++.||||+|++++.++.++.+.|++||.|+|+|+++|++++||+||+|+.
T Consensus 316 gieGLvh~SeLs~~~v~~~~~~~kvGd~V~VkIi~ID~e~rrI~LSlK~~ 365 (486)
T PRK07899 316 GIEGLVHISELAERHVEVPEQVVQVGDEVFVKVIDIDLERRRISLSLKQA 365 (486)
T ss_pred CcEEEEEHHHcCcccccCccceeCCCCEEEEEEEEEECCCCEEEEEEEEc
Confidence 89999999999999998899999999999999999999999999999985
|
|
| >PRK07899 rpsA 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=413.77 Aligned_cols=328 Identities=21% Similarity=0.265 Sum_probs=289.1
Q ss_pred cccCCCCCeEEEEEEEEecCceEEEeCCCeEEeecCCCcccccccCCCCCCCCCCEEEEEEEEE--eCCeEEEEEccccc
Q 000176 493 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLV 570 (1924)
Q Consensus 493 ~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hlsd~~~~~p~~~f~vG~~vk~rVl~v--~~~~l~lT~K~~Lv 570 (1924)
+..+++|++|+|+|++++++|++|+|+.+++|+||..|+++.+..+|++.|++|++|+|.|+.+ ..+++.||+|+...
T Consensus 30 ~~~~~~GdiV~G~V~~v~~~gv~VdIg~k~eG~Ip~~Els~~~~~~~~~~~~vGd~Ie~~V~~~~~~~g~liLS~k~~~~ 109 (486)
T PRK07899 30 IKYFNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVEVGDEVEALVLQKEDKEGRLILSKKRAQY 109 (486)
T ss_pred HhcCCCCCEEEEEEEEEECCcEEEEECCCcEEEEEHHHhcccccCChhhcCCCCCEEEEEEEEEECCCCeEEEEehhhcc
Confidence 4568999999999999999999999988899999999999988889999999999999999999 35799999998654
Q ss_pred cchhhHhhhhcccC-CCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCCCCCCCCCCCCCCCEEEEEEEEEcCCCCE
Q 000176 571 KSKLAILSSYAEAT-DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649 (1924)
Q Consensus 571 ~~~~~~~~~~~~~~-~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~~r 649 (1924)
. ..|..++++. .|+++.|+|+++.++|+||+| |++||+|.|++++.+..++.. .+||+|+|+|+++|+++++
T Consensus 110 ~---~~w~~ie~~~e~g~~V~G~V~~v~k~G~~Vdl--Gi~gflP~Sel~~~~~~~~~~--~vGq~V~vkVleid~~~~~ 182 (486)
T PRK07899 110 E---RAWGTIEKIKEKDGVVTGTVIEVVKGGLILDI--GLRGFLPASLVEMRRVRDLQP--YIGQEIEAKIIELDKNRNN 182 (486)
T ss_pred c---chHHHHHHHhcCCCEEEEEEEEEECCeEEEEE--CCEEEEEhhHhcccccCChhh--cCCCEEEEEEEEEECCCCE
Confidence 4 3466776664 799999999999999999999 699999999998876666654 4999999999999999999
Q ss_pred EEEEEeeCCC-----Cc-ccccccCCCCEEEEEEEEEccCcEEEEEEecCceeEEEeCCcCCCCccchhhhccccCCCCe
Q 000176 650 INLSFMMKPT-----RV-SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723 (1924)
Q Consensus 650 i~lS~k~~~~-----~~-~~~~~~~~G~iv~g~V~~~~~~g~~V~l~~~~~~~g~i~~~~Lsd~~~~~~~~~~~~~~G~~ 723 (1924)
+.||+|.... ++ .....+++|++++|+|++++++|++|.+ ++++|+||.++||+....+ ..+.+++|++
T Consensus 183 ivLSrr~~l~~~~~~~~~~~~~~lk~G~iv~G~V~~i~~~G~FVdl---ggv~Glv~~Sels~~~v~~--~~~~~kvGd~ 257 (486)
T PRK07899 183 VVLSRRAWLEQTQSEVRSEFLNQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDH--PSEVVEVGQE 257 (486)
T ss_pred EEEEhHHHHHhhhHHHHHHHHHhccCCCEEEEEEEEEECCeEEEEE---CCEEEEEEHHHCCCcccCC--HHHhcCCCCE
Confidence 9999984311 11 1235788999999999999999999999 4699999999999854332 3457999999
Q ss_pred Ee-eEEEeecCCCeEEEEecccccchhccCCCCcCccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCc
Q 000176 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802 (1924)
Q Consensus 724 i~-~vl~id~~~~~i~ls~K~sl~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~ 802 (1924)
|+ +++.+|+++++|.||+|+.+.++|.... ..+++|+++.|+|++++++|+||++.+|+.||+|.+++++.++..+
T Consensus 258 V~vkVl~iD~e~~rI~LSlK~~~~dPw~~~~---~~~~vG~vv~G~V~~I~~fGvFVeL~~gieGLvh~SeLs~~~v~~~ 334 (486)
T PRK07899 258 VTVEVLDVDMDRERVSLSLKATQEDPWQQFA---RTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVP 334 (486)
T ss_pred EEEEEEEEECCCCEEEEEEeeccccchhhhH---HhcCCCCEEEEEEEEEeccEEEEEeCCCcEEEEEHHHcCcccccCc
Confidence 99 7899999999999999999988886533 3367899999999999999999999999999999999999888889
Q ss_pred ccCCCCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000176 803 SKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1924)
Q Consensus 803 ~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~~ 835 (1924)
...|++||+|.|+|+++|++++|+.||+|+...
T Consensus 335 ~~~~kvGd~V~VkIi~ID~e~rrI~LSlK~~~~ 367 (486)
T PRK07899 335 EQVVQVGDEVFVKVIDIDLERRRISLSLKQANE 367 (486)
T ss_pred cceeCCCCEEEEEEEEEECCCCEEEEEEEEccc
Confidence 999999999999999999999999999998865
|
|
| >PRK06676 rpsA 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=410.33 Aligned_cols=336 Identities=26% Similarity=0.426 Sum_probs=295.5
Q ss_pred CCCCCEEEEEEEEEECCeEEEEe-CCCeEEEEEccccCCCCchhhhhccccCCCCEEEEEEEEEeCCCcEEEEEeccccc
Q 000176 1161 VSIGQRVTGYVYKVDNEWALLTI-SRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1239 (1924)
Q Consensus 1161 ~~~G~~v~g~V~~v~~~~~~v~l-~~~~~g~i~~~~~s~~~~~~~~~~~~f~vG~~v~~~V~~vd~~~~~l~LS~~~~~~ 1239 (1924)
+++|++++|+|.++.++++||++ ++++.|++|..++++.. ..++...|++|+.++|+|+.++.+++++.||++...
T Consensus 15 ~~~G~iv~G~V~~i~~~g~~V~i~~~~~~g~lp~~e~~~~~--~~~~~~~~~vGd~v~~~V~~v~~~~~~i~lS~k~~~- 91 (390)
T PRK06676 15 VEVGDVVTGEVLKVEDKQVFVNIEGYKVEGVIPISELSNDH--IEDINDVVKVGDELEVYVLKVEDGEGNLLLSKRRLE- 91 (390)
T ss_pred ccCCCEEEEEEEEEECCeEEEEEecCCcEEEEEHHHhcccc--ccCcccccCCCCEEEEEEEEEECCCCCEEEEHHHhh-
Confidence 59999999999999999999999 88999999999998753 356777899999999999999999999999999863
Q ss_pred ccccccccccccccccccCCCCEEEEEEEEEecCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCEEEEEEEEE
Q 000176 1240 GISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319 (1924)
Q Consensus 1240 ~~~~~~~~~~~~~~~~~i~~G~~v~g~V~~v~~~~~g~~V~l~~~~~G~v~~selsd~~~~~p~~~~~~G~~v~~~Vl~v 1319 (1924)
....|......++ +|+++.|+|+++.++ |++|+++ |+.|+||++|+++.+..+|.. + +|+.+.|+|+++
T Consensus 92 -~~~~~~~~~~~~~-----~G~~v~g~V~~v~~~--G~~V~~~-G~~gflp~~el~~~~~~~~~~-~-vG~~v~~~Vl~~ 160 (390)
T PRK06676 92 -AEKAWDKLEEKFE-----EGEVVEVKVTEVVKG--GLVVDVE-GVRGFIPASLISTRFVEDFSD-F-KGKTLEVKIIEL 160 (390)
T ss_pred -hhhhHHHHHHhcc-----CCCEEEEEEEEEECC--eEEEEEC-CEEEEEEHHHcCCccCCChHH-c-CCCEEEEEEEEE
Confidence 2345654444444 999999999999998 9999995 679999999999988777654 3 899999999999
Q ss_pred ecccCCceEEEEeeeccccCCCCCCCCCCCCCCCCCcchhhhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECcc
Q 000176 1320 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399 (1924)
Q Consensus 1320 d~~~~~~~~i~LSlr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~se 1399 (1924)
|++ ++++.||+|... .... ..++...+.++++|++|.|+|+++.++|+||.++ +++|+||+++
T Consensus 161 d~~---~~~i~lS~k~~~-----~~~~--------~~~~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l~-~v~g~v~~se 223 (390)
T PRK06676 161 DPE---KNRVILSRRAVV-----EEER--------AAKKEELLSSLKEGDVVEGTVARLTDFGAFVDIG-GVDGLVHISE 223 (390)
T ss_pred ECC---CCEEEEEeHHHh-----hhhh--------hhHHHHHHhhCCCCCEEEEEEEEEecceEEEEeC-CeEEEEEHHH
Confidence 986 679999999874 1100 1123344567999999999999999999999996 7999999999
Q ss_pred CCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecccccccchhccccccccCCCcEEEEEEEEeecceEEEEEec
Q 000176 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1479 (1924)
Q Consensus 1400 lsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~ 1479 (1924)
++|.++.+|.+.|++|+.|+++|+++|+++++|.||+|+...+||.. ...++++|+++.|+|+++.+||+||++.+
T Consensus 224 ls~~~~~~~~~~~~vGd~i~~~Vl~vd~~~~~i~lS~k~~~~~~~~~----~~~~~~~G~~v~g~V~~i~~~G~fV~l~~ 299 (390)
T PRK06676 224 LSHERVEKPSEVVSVGQEVEVKVLSIDWETERISLSLKDTLPGPWEG----VEEKLPEGDVIEGTVKRLTDFGAFVEVLP 299 (390)
T ss_pred cCccccCCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEeecccCcccc----chhhhcCCcEEEEEEEEEeCceEEEEECC
Confidence 99999999999999999999999999999999999999988777643 35689999999999999999999999976
Q ss_pred CceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccccc
Q 000176 1480 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1532 (1924)
Q Consensus 1480 ~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s~~ 1532 (1924)
++.||||+|++++.++.++.+.|++||.|+|+|+++|++++||.||+|+...
T Consensus 300 -gi~Glv~~se~~~~~~~~~~~~~~~Gd~v~v~V~~id~e~~~i~ls~k~~~~ 351 (390)
T PRK06676 300 -GVEGLVHISQISHKHIATPSEVLEEGQEVKVKVLEVNEEEKRISLSIKALEE 351 (390)
T ss_pred -CCeEEEEhHHcCccccCChhhccCCCCEEEEEEEEEECCCCEEEEEEEeccc
Confidence 8999999999999998888899999999999999999999999999998644
|
|
| >PRK06676 rpsA 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=401.62 Aligned_cols=335 Identities=24% Similarity=0.306 Sum_probs=292.2
Q ss_pred cccccccccCCCCCeEEEEEEEEecCceEEEe-CCCeEEeecCCCcccccccCCCCCCCCCCEEEEEEEEE--eCCeEEE
Q 000176 487 EGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF-PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITV 563 (1924)
Q Consensus 487 ~~~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l-~~~v~g~vp~~hlsd~~~~~p~~~f~vG~~vk~rVl~v--~~~~l~l 563 (1924)
++...++.++++|++|+|+|++++++|++|++ +++++|++|..|+++.+..+|...|++|++|+|+|+.+ +++++.|
T Consensus 6 ~~~~~~~~~~~~G~iv~G~V~~i~~~g~~V~i~~~~~~g~lp~~e~~~~~~~~~~~~~~vGd~v~~~V~~v~~~~~~i~l 85 (390)
T PRK06676 6 EESLNSVKEVEVGDVVTGEVLKVEDKQVFVNIEGYKVEGVIPISELSNDHIEDINDVVKVGDELEVYVLKVEDGEGNLLL 85 (390)
T ss_pred HHHhhhhhcccCCCEEEEEEEEEECCeEEEEEecCCcEEEEEHHHhccccccCcccccCCCCEEEEEEEEEECCCCCEEE
Confidence 34455788999999999999999999999999 77899999999999988889999999999999999999 4567999
Q ss_pred EEccccccchhhHhhhhcc-cCCCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCCCCCCCCCCCCCCCEEEEEEEE
Q 000176 564 THKKTLVKSKLAILSSYAE-ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 642 (1924)
Q Consensus 564 T~K~~Lv~~~~~~~~~~~~-~~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~~~~~~~~~~~vGq~v~~rVl~ 642 (1924)
|+|+.... +.|..+.+ .++|++++|+|+++.++||||+| +|++||+|.+++++....++.. + +||++.|+|++
T Consensus 86 S~k~~~~~---~~~~~~~~~~~~G~~v~g~V~~v~~~G~~V~~-~G~~gflp~~el~~~~~~~~~~-~-vG~~v~~~Vl~ 159 (390)
T PRK06676 86 SKRRLEAE---KAWDKLEEKFEEGEVVEVKVTEVVKGGLVVDV-EGVRGFIPASLISTRFVEDFSD-F-KGKTLEVKIIE 159 (390)
T ss_pred EHHHhhhh---hhHHHHHHhccCCCEEEEEEEEEECCeEEEEE-CCEEEEEEHHHcCCccCCChHH-c-CCCEEEEEEEE
Confidence 99986432 34555443 47899999999999999999999 6789999999999876666654 3 99999999999
Q ss_pred EcCCCCEEEEEEeeCCCC-----c-ccccccCCCCEEEEEEEEEccCcEEEEEEecCceeEEEeCCcCCCCccchhhhcc
Q 000176 643 SIPASRRINLSFMMKPTR-----V-SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKS 716 (1924)
Q Consensus 643 vd~~~~ri~lS~k~~~~~-----~-~~~~~~~~G~iv~g~V~~~~~~g~~V~l~~~~~~~g~i~~~~Lsd~~~~~~~~~~ 716 (1924)
+|++++++.||++..... + .....+.+|++|.|+|+++++.|++|.+ ++++|+||.+|+++.... ...+
T Consensus 160 ~d~~~~~i~lS~k~~~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l---~~v~g~v~~sels~~~~~--~~~~ 234 (390)
T PRK06676 160 LDPEKNRVILSRRAVVEEERAAKKEELLSSLKEGDVVEGTVARLTDFGAFVDI---GGVDGLVHISELSHERVE--KPSE 234 (390)
T ss_pred EECCCCEEEEEeHHHhhhhhhhHHHHHHhhCCCCCEEEEEEEEEecceEEEEe---CCeEEEEEHHHcCccccC--CHHH
Confidence 999999999999864221 1 1235688999999999999999999999 469999999999974322 2345
Q ss_pred ccCCCCeEe-eEEEeecCCCeEEEEecccccchhccCCCCcCccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccC
Q 000176 717 VIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV 795 (1924)
Q Consensus 717 ~~~~G~~i~-~vl~id~~~~~i~ls~K~sl~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s 795 (1924)
.+++|+.|+ +++.+|++.+++.||+|+.+.++|..+ ++++++|+++.|+|++++++|+||++.+++.||+|.++++
T Consensus 235 ~~~vGd~i~~~Vl~vd~~~~~i~lS~k~~~~~~~~~~---~~~~~~G~~v~g~V~~i~~~G~fV~l~~gi~Glv~~se~~ 311 (390)
T PRK06676 235 VVSVGQEVEVKVLSIDWETERISLSLKDTLPGPWEGV---EEKLPEGDVIEGTVKRLTDFGAFVEVLPGVEGLVHISQIS 311 (390)
T ss_pred hcCCCCEEEEEEEEEeCCCCEEEEEEeecccCccccc---hhhhcCCcEEEEEEEEEeCceEEEEECCCCeEEEEhHHcC
Confidence 789999999 788999999999999999998877654 4568999999999999999999999999999999999999
Q ss_pred cccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000176 796 DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1924)
Q Consensus 796 ~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~~ 835 (1924)
+.+..++.+.|++||.|.|+|+++|++++|+.||+|....
T Consensus 312 ~~~~~~~~~~~~~Gd~v~v~V~~id~e~~~i~ls~k~~~~ 351 (390)
T PRK06676 312 HKHIATPSEVLEEGQEVKVKVLEVNEEEKRISLSIKALEE 351 (390)
T ss_pred ccccCChhhccCCCCEEEEEEEEEECCCCEEEEEEEeccc
Confidence 9888888899999999999999999999999999998765
|
|
| >PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=410.50 Aligned_cols=335 Identities=24% Similarity=0.410 Sum_probs=296.6
Q ss_pred cCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEEccccCCCCchhhhhccccCCCCEEEEEEEEEeCCCcEEEEEeccccc
Q 000176 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1239 (1924)
Q Consensus 1160 ~~~~G~~v~g~V~~v~~~~~~v~l~~~~~g~i~~~~~s~~~~~~~~~~~~f~vG~~v~~~V~~vd~~~~~l~LS~~~~~~ 1239 (1924)
.+++|+.|+|+|.++.++++||++++...|+||..+++++. ..++.+.|++|+.++|+|++++.+++++.||++.+..
T Consensus 299 ~l~~G~iV~G~V~~v~~~gv~Vdig~~~~G~lp~~els~~~--~~~~~~~~~vGd~V~v~V~~vd~~~g~i~LS~k~~~~ 376 (647)
T PRK00087 299 QIRRGDIVKGTVVSVNENEVFVDVGYKSEGVIPLRELTLDE--ISSLKESVKVGDEIEVKVLKLEDEDGYVVLSKKEADR 376 (647)
T ss_pred hccCCCEEEEEEEEEECCEEEEEECCCeEEEEEHHHhcccc--cCChhhccCCCCEEEEEEEEEECCCCcEEEEeehhcc
Confidence 36999999999999999999999999999999999999763 4567788999999999999999999999999998742
Q ss_pred ccccccccccccccccccCCCCEEEEEEEEEecCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCEEEEEEEEE
Q 000176 1240 GISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319 (1924)
Q Consensus 1240 ~~~~~~~~~~~~~~~~~i~~G~~v~g~V~~v~~~~~g~~V~l~~~~~G~v~~selsd~~~~~p~~~~~~G~~v~~~Vl~v 1319 (1924)
...|....+.++ +|+++.|+|+++.++ |++|++++ ++|++|.+|+++.+..+|.. + +|+.+.|+|+++
T Consensus 377 --~~~~~~l~~~~~-----~G~iv~g~V~~v~~~--G~~V~lgg-i~gfiP~sel~~~~~~d~~~-~-vG~~v~v~Vl~v 444 (647)
T PRK00087 377 --EKAWKELEEAFE-----NGEPVKGKVKEVVKG--GLLVDYGG-VRAFLPASHVELGYVEDLSE-Y-KGQELEVKIIEF 444 (647)
T ss_pred --hhHHHHHHHHhh-----CCCEEEEEEEEEECC--eEEEEECC-EEEEEEHHHhCccccCCHHH-h-CCCEEEEEEEEE
Confidence 244554444445 999999999999998 99999984 99999999999988877654 3 899999999999
Q ss_pred ecccCCceE-EEEeeeccccCCCCCCCCCCCCCCCCCcchhhhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECc
Q 000176 1320 SRTVRGTFH-VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398 (1924)
Q Consensus 1320 d~~~~~~~~-i~LSlr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s 1398 (1924)
|++ +++ +.+|+|... ... ...+....++++++|+++.|+|+++.++|+||.+ ++++|++|++
T Consensus 445 d~e---~~~~l~lS~k~~~-----~~~--------~~~~~~~~~~~l~~G~iV~g~V~~v~~~G~fV~l-~gv~Gll~~s 507 (647)
T PRK00087 445 NRK---RRKKVVLSRKAIL-----EEE--------KEKKKEETWNSLEEGDVVEGEVKRLTDFGAFVDI-GGVDGLLHVS 507 (647)
T ss_pred EcC---CCcEEEEEeHHHh-----hhh--------hhhHHHHHHHhCCCCCEEEEEEEEEeCCcEEEEE-CCEEEEEEHH
Confidence 986 556 999998874 100 0123445567799999999999999999999999 6899999999
Q ss_pred cCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecccccccchhccccccccCCCcEEEEEEEEeecceEEEEEe
Q 000176 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1478 (1924)
Q Consensus 1399 elsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~ 1478 (1924)
+++|.++.+|.+.|++||.|.++|+++|+++++|.||+|+...+||.. ...++++|+++.|+|+++.+||+||+|.
T Consensus 508 els~~~~~~~~~~~~vGd~V~vkV~~id~~~~~I~lS~K~~~~~p~~~----~~~~~~~G~~v~g~V~~i~~~G~fV~l~ 583 (647)
T PRK00087 508 EISWGRVEKPSDVLKVGDEIKVYILDIDKENKKLSLSLKKLLPDPWEN----VEEKYPVGSIVLGKVVRIAPFGAFVELE 583 (647)
T ss_pred HcCccccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEeeccccChhhh----hhhhccCCeEEEEEEEEEECCeEEEEEC
Confidence 999999999999999999999999999999999999999998877654 2567899999999999999999999997
Q ss_pred cCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1479 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1479 ~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
+ ++.||||++++++.++.++.+.|++||.|+|+|+++|++++||.||+|..
T Consensus 584 ~-~i~Gli~~sel~~~~~~~~~~~~kvGd~V~vkV~~id~e~~rI~lslk~~ 634 (647)
T PRK00087 584 P-GVDGLVHISQISWKRIDKPEDVLSEGEEVKAKILEVDPEEKRIRLSIKEV 634 (647)
T ss_pred C-CCEEEEEhhhcCccccCCHhhcCCCCCEEEEEEEEEeCCCCEEEEEEeec
Confidence 6 89999999999999999999999999999999999999999999999985
|
|
| >PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=388.60 Aligned_cols=332 Identities=23% Similarity=0.285 Sum_probs=290.9
Q ss_pred ccccccCCCCCeEEEEEEEEecCceEEEeCCCeEEeecCCCcccccccCCCCCCCCCCEEEEEEEEE--eCCeEEEEEcc
Q 000176 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKK 567 (1924)
Q Consensus 490 ~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hlsd~~~~~p~~~f~vG~~vk~rVl~v--~~~~l~lT~K~ 567 (1924)
.....++++|++|+|+|.+++++|++|++++.++|++|..|+++....+|.+.|++|++|+|+|+.+ ..+++.||+|+
T Consensus 294 ~~~~~~l~~G~iV~G~V~~v~~~gv~Vdig~~~~G~lp~~els~~~~~~~~~~~~vGd~V~v~V~~vd~~~g~i~LS~k~ 373 (647)
T PRK00087 294 NELEKQIRRGDIVKGTVVSVNENEVFVDVGYKSEGVIPLRELTLDEISSLKESVKVGDEIEVKVLKLEDEDGYVVLSKKE 373 (647)
T ss_pred HHHHhhccCCCEEEEEEEEEECCEEEEEECCCeEEEEEHHHhcccccCChhhccCCCCEEEEEEEEEECCCCcEEEEeeh
Confidence 3457789999999999999999999999998899999999999888889999999999999999999 46799999998
Q ss_pred ccccchhhHhhhhcc-cCCCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCCCCCCCCCCCCCCCEEEEEEEEEcCC
Q 000176 568 TLVKSKLAILSSYAE-ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 646 (1924)
Q Consensus 568 ~Lv~~~~~~~~~~~~-~~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~ 646 (1924)
..... .|..+.+ .++|+++.|+|+++.++|+||+++ +++||+|.+++++....++.. + +|+++.|+|+++|++
T Consensus 374 ~~~~~---~~~~l~~~~~~G~iv~g~V~~v~~~G~~V~lg-gi~gfiP~sel~~~~~~d~~~-~-vG~~v~v~Vl~vd~e 447 (647)
T PRK00087 374 ADREK---AWKELEEAFENGEPVKGKVKEVVKGGLLVDYG-GVRAFLPASHVELGYVEDLSE-Y-KGQELEVKIIEFNRK 447 (647)
T ss_pred hcchh---HHHHHHHHhhCCCEEEEEEEEEECCeEEEEEC-CEEEEEEHHHhCccccCCHHH-h-CCCEEEEEEEEEEcC
Confidence 76543 2333332 478999999999999999999995 599999999998876666654 3 999999999999999
Q ss_pred CCE-EEEEEeeCCC-----C-cccccccCCCCEEEEEEEEEccCcEEEEEEecCceeEEEeCCcCCCCccchhhhccccC
Q 000176 647 SRR-INLSFMMKPT-----R-VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 719 (1924)
Q Consensus 647 ~~r-i~lS~k~~~~-----~-~~~~~~~~~G~iv~g~V~~~~~~g~~V~l~~~~~~~g~i~~~~Lsd~~~~~~~~~~~~~ 719 (1924)
+++ +.+|++.... + ....+.+++|+++.|+|++++++|++|.+ ++++|+||.+++++..... ..+.|+
T Consensus 448 ~~~~l~lS~k~~~~~~~~~~~~~~~~~l~~G~iV~g~V~~v~~~G~fV~l---~gv~Gll~~sels~~~~~~--~~~~~~ 522 (647)
T PRK00087 448 RRKKVVLSRKAILEEEKEKKKEETWNSLEEGDVVEGEVKRLTDFGAFVDI---GGVDGLLHVSEISWGRVEK--PSDVLK 522 (647)
T ss_pred CCcEEEEEeHHHhhhhhhhHHHHHHHhCCCCCEEEEEEEEEeCCcEEEEE---CCEEEEEEHHHcCccccCC--HHHhcC
Confidence 998 9999986421 0 11235678999999999999999999999 5799999999999755332 356799
Q ss_pred CCCeEe-eEEEeecCCCeEEEEecccccchhccCCCCcCccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCccc
Q 000176 720 PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 798 (1924)
Q Consensus 720 ~G~~i~-~vl~id~~~~~i~ls~K~sl~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~ 798 (1924)
+|+.++ +++.+|++++++.||+|+.+.++|..+. +++++|+.+.|.|++++++|+||++.+++.||+|.+++++.+
T Consensus 523 vGd~V~vkV~~id~~~~~I~lS~K~~~~~p~~~~~---~~~~~G~~v~g~V~~i~~~G~fV~l~~~i~Gli~~sel~~~~ 599 (647)
T PRK00087 523 VGDEIKVYILDIDKENKKLSLSLKKLLPDPWENVE---EKYPVGSIVLGKVVRIAPFGAFVELEPGVDGLVHISQISWKR 599 (647)
T ss_pred CCCEEEEEEEEEECCCCEEEEEeeccccChhhhhh---hhccCCeEEEEEEEEEECCeEEEEECCCCEEEEEhhhcCccc
Confidence 999999 7889999999999999999999887654 457899999999999999999999999999999999999999
Q ss_pred ccCcccCCCCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000176 799 RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1924)
Q Consensus 799 ~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~~ 835 (1924)
..++...|++||.|+|+|+++|++++|+.||+|....
T Consensus 600 ~~~~~~~~kvGd~V~vkV~~id~e~~rI~lslk~~~~ 636 (647)
T PRK00087 600 IDKPEDVLSEGEEVKAKILEVDPEEKRIRLSIKEVEE 636 (647)
T ss_pred cCCHhhcCCCCCEEEEEEEEEeCCCCEEEEEEeeccc
Confidence 9999999999999999999999999999999997754
|
|
| >PRK07400 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=328.80 Aligned_cols=240 Identities=23% Similarity=0.386 Sum_probs=215.6
Q ss_pred cCCCCEEEEEEEEEecCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCEEEEEEEEEecccCCceEEEEeeecc
Q 000176 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1336 (1924)
Q Consensus 1257 i~~G~~v~g~V~~v~~~~~g~~V~l~~~~~G~v~~selsd~~~~~p~~~~~~G~~v~~~Vl~vd~~~~~~~~i~LSlr~~ 1336 (1924)
+++|+++.|+|+++.++ |++|+||.+..|++|++|+++++..+|.+.|++|+.++|+|++++.+ ++++.||+|+.
T Consensus 29 ~~~G~iv~G~V~~i~~~--g~~Vdig~k~~g~lp~sEis~~~~~~~~~~~~~G~~v~~~Vi~~~~~---~~~i~lS~k~~ 103 (318)
T PRK07400 29 FKPGDIVNGTVFSLEPR--GALIDIGAKTAAFMPIQEMSINRVEGPEEVLQPNETREFFILSDENE---DGQLTLSIRRI 103 (318)
T ss_pred cCCCCEEEEEEEEEECC--EEEEEECCCeEEEEEHHHhccccccCHHHccCCCCEEEEEEEEEeCC---CCeEEEehhhh
Confidence 55999999999999998 99999999999999999999999999999999999999999999876 67999999987
Q ss_pred ccCCCCCCCCCCCCCCCCCcchhhhhccC-CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCC
Q 000176 1337 LDGMSSTNSSDLSTDVDTPGKHLEKIEDL-SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1415 (1924)
Q Consensus 1337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-k~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G 1415 (1924)
. . ...|..+.++ +.|++|+|+|++++++|+||.++ |++||||+++++|.+.. +.+ +|
T Consensus 104 ~-----~------------~~~w~~l~~~~~~~~~V~g~V~~~~~~G~~V~l~-Gv~gfip~s~ls~~~~~---~~~-vG 161 (318)
T PRK07400 104 E-----Y------------MRAWERVRQLQKEDATVRSEVFATNRGGALVRIE-GLRGFIPGSHISTRKPK---EEL-VG 161 (318)
T ss_pred h-----h------------hhHHHHHHHhccCCCEEEEEEEEEECCeEEEEEC-CEEEEEEHHHcCccCCc---ccc-CC
Confidence 5 1 1235566555 46999999999999999999996 99999999999996543 334 99
Q ss_pred cEEEEEEEEEeCCCCEEEEEeecccccccchhccccccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCccc
Q 000176 1416 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH 1495 (1924)
Q Consensus 1416 ~~V~~kVl~vd~e~~ri~LSlk~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~ 1495 (1924)
+.+.++|+++|+++++|.||+|+..... .+.++++|+++.|+|++|.+||+||++. ++.||||+++++|.+
T Consensus 162 ~~i~~kVl~id~~~~~i~lS~K~~~~~~-------~~~~~k~G~vv~G~V~~I~~~G~fV~i~--gv~Gllhisels~~~ 232 (318)
T PRK07400 162 EELPLKFLEVDEERNRLVLSHRRALVER-------KMNRLEVGEVVVGTVRGIKPYGAFIDIG--GVSGLLHISEISHEH 232 (318)
T ss_pred CEEEEEEEEEEcccCEEEEEhhHhhhhh-------hhccCCCCCEEEEEEEEEECCeEEEEEC--CEEEEEEHHHccccc
Confidence 9999999999999999999999766431 3678999999999999999999999994 799999999999999
Q ss_pred ccCcccccCCCcEEEEEEEEEecCCCeeEEecccccc
Q 000176 1496 VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1532 (1924)
Q Consensus 1496 ~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s~~ 1532 (1924)
+.++.+.|++||.|+|+|+++|.+++||.||+|...-
T Consensus 233 ~~~~~~~~~vGd~VkvkVl~iD~e~~rI~LS~K~l~~ 269 (318)
T PRK07400 233 IETPHSVFNVNDEMKVMIIDLDAERGRISLSTKQLEP 269 (318)
T ss_pred ccChhhccCCCCEEEEEEEEEeCCCCEEEEEEecccc
Confidence 9999999999999999999999999999999999643
|
|
| >PRK07400 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=310.34 Aligned_cols=243 Identities=22% Similarity=0.301 Sum_probs=215.9
Q ss_pred hhhhc-ccCCCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCCCCCCCCCCCCCCCEEEEEEEEEcCCCCEEEEEEe
Q 000176 577 LSSYA-EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655 (1924)
Q Consensus 577 ~~~~~-~~~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~~ri~lS~k 655 (1924)
+.+|. .+++|+++.|+|+++.++||||+|++...||+|.+|+++..+.+|.+.|++||+++|+|+++|++++++.||++
T Consensus 22 le~~~~~~~~G~iv~G~V~~i~~~g~~Vdig~k~~g~lp~sEis~~~~~~~~~~~~~G~~v~~~Vi~~~~~~~~i~lS~k 101 (318)
T PRK07400 22 LDKYDYHFKPGDIVNGTVFSLEPRGALIDIGAKTAAFMPIQEMSINRVEGPEEVLQPNETREFFILSDENEDGQLTLSIR 101 (318)
T ss_pred HHhhHhhcCCCCEEEEEEEEEECCEEEEEECCCeEEEEEHHHhccccccCHHHccCCCCEEEEEEEEEeCCCCeEEEehh
Confidence 33443 37899999999999999999999988899999999999988889999999999999999999999999999999
Q ss_pred eCC--CCccccc-ccCCCCEEEEEEEEEccCcEEEEEEecCceeEEEeCCcCCCCccchhhhccccCCCCeEe-eEEEee
Q 000176 656 MKP--TRVSEDD-LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 731 (1924)
Q Consensus 656 ~~~--~~~~~~~-~~~~G~iv~g~V~~~~~~g~~V~l~~~~~~~g~i~~~~Lsd~~~~~~~~~~~~~~G~~i~-~vl~id 731 (1924)
... .+|.... ....|++|+|+|+.+.+.|++|.+ ++++||||.+|||++... +. .+|+.|+ +++.+|
T Consensus 102 ~~~~~~~w~~l~~~~~~~~~V~g~V~~~~~~G~~V~l---~Gv~gfip~s~ls~~~~~-----~~-~vG~~i~~kVl~id 172 (318)
T PRK07400 102 RIEYMRAWERVRQLQKEDATVRSEVFATNRGGALVRI---EGLRGFIPGSHISTRKPK-----EE-LVGEELPLKFLEVD 172 (318)
T ss_pred hhhhhhHHHHHHHhccCCCEEEEEEEEEECCeEEEEE---CCEEEEEEHHHcCccCCc-----cc-cCCCEEEEEEEEEE
Confidence 752 2344333 344689999999999999999999 589999999999985321 23 4999999 899999
Q ss_pred cCCCeEEEEecccccchhccCCCCcCccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCE
Q 000176 732 NESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQS 811 (1924)
Q Consensus 732 ~~~~~i~ls~K~sl~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~ 811 (1924)
++++++.||+|+.+.+. .+.++++|+++.|+|++|+++|+||++ +|+.||+|.+++++.++.++.+.|++||.
T Consensus 173 ~~~~~i~lS~K~~~~~~------~~~~~k~G~vv~G~V~~I~~~G~fV~i-~gv~Gllhisels~~~~~~~~~~~~vGd~ 245 (318)
T PRK07400 173 EERNRLVLSHRRALVER------KMNRLEVGEVVVGTVRGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHSVFNVNDE 245 (318)
T ss_pred cccCEEEEEhhHhhhhh------hhccCCCCCEEEEEEEEEECCeEEEEE-CCEEEEEEHHHcccccccChhhccCCCCE
Confidence 99999999999888643 356789999999999999999999999 58999999999999999999999999999
Q ss_pred EEEEEEEeeCCCCeEEEeeccccc
Q 000176 812 VRSNILDVNSETGRITLSLKQSCC 835 (1924)
Q Consensus 812 V~~~V~~id~~~~r~~lSlk~~~~ 835 (1924)
|+|+|+++|.+++|+.||+|....
T Consensus 246 VkvkVl~iD~e~~rI~LS~K~l~~ 269 (318)
T PRK07400 246 MKVMIIDLDAERGRISLSTKQLEP 269 (318)
T ss_pred EEEEEEEEeCCCCEEEEEEecccc
Confidence 999999999999999999999865
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.8e-23 Score=236.24 Aligned_cols=257 Identities=27% Similarity=0.444 Sum_probs=219.2
Q ss_pred CCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHH---------------------
Q 000176 1656 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL--------------------- 1714 (1924)
Q Consensus 1656 ~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl--------------------- 1714 (1924)
+...++..|+|.+..+|+ ...|++|+.|.+..|.+.-||.+|+||+..+...++.|.+
T Consensus 189 eieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iy 267 (677)
T KOG1915|consen 189 EIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIY 267 (677)
T ss_pred HHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999988887 6789999999999999999999999988755543222211
Q ss_pred -------------------------------------------------------HHHHHHHHHHHHcCCCCHHHHHHHH
Q 000176 1715 -------------------------------------------------------NIWVAYFNLENEYGNPPEEAVVKVF 1739 (1924)
Q Consensus 1715 -------------------------------------------------------~lWiayl~le~~~g~~~~e~a~~vf 1739 (1924)
.-|..|+.|+...| +.+..+++|
T Consensus 268 kyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g--~~~~Ire~y 345 (677)
T KOG1915|consen 268 KYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVG--DKDRIRETY 345 (677)
T ss_pred HHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcC--CHHHHHHHH
Confidence 66888888888888 569999999
Q ss_pred HHHHhcCCCH---H-------HHHHHHHHH-HHhCChHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHhc-CHHHHHH
Q 000176 1740 QRALQYCDPK---K-------VHLALLGLY-ERTEQNKLADELLYKMIKKFKH----SCKVWLRRVQRLLKQ-QQEGVQA 1803 (1924)
Q Consensus 1740 erAl~~~~~~---~-------i~~~l~~i~-~~~gk~e~A~~~fe~~lk~~~~----~~~vw~~~a~~l~~~-~~~~A~~ 1803 (1924)
+||+...|+. . +|+.|+-+. ....+.+.++++|+++++..|+ ..++|+.||+|.+++ +...||.
T Consensus 346 ErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARk 425 (677)
T KOG1915|consen 346 ERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARK 425 (677)
T ss_pred HHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHH
Confidence 9999998873 3 444444433 3568899999999999997764 489999999999999 9999999
Q ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 000176 1804 VVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL 1883 (1924)
Q Consensus 1804 l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~ 1883 (1924)
++..||-.+|.. +++..|..++.+.+++||.|.+|++-|...|.+...|..|+.++...|+.++||.+|+-|+++..
T Consensus 426 iLG~AIG~cPK~---KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 426 ILGNAIGKCPKD---KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHHHhccCCch---hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 999999999987 79999999999999999999999999999999999999999999999999999999999998422
Q ss_pred CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000176 1884 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919 (1924)
Q Consensus 1884 ~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v 1919 (1924)
- +-...+|+.|++||...|..+.++.+|+|-|+.-
T Consensus 503 l-dmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 503 L-DMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred c-ccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 1 2233689999999999999999999999988754
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=234.16 Aligned_cols=256 Identities=23% Similarity=0.385 Sum_probs=218.6
Q ss_pred CCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000176 1656 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1735 (1924)
Q Consensus 1656 ~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a 1735 (1924)
+...|++.|||+|..+..+..+|++|+.+.+....+..||.+++||+.+.|- - -.+|..|+.+|..+|| ..-|
T Consensus 88 e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-V----dqlWyKY~ymEE~LgN--i~ga 160 (677)
T KOG1915|consen 88 EIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-V----DQLWYKYIYMEEMLGN--IAGA 160 (677)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-H----HHHHHHHHHHHHHhcc--cHHH
Confidence 3667899999999999999999999999999999999999999999988773 2 2589999999999995 4889
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC
Q 000176 1736 VKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1814 (1924)
Q Consensus 1736 ~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~ 1814 (1924)
+++|+|-+...|+.+.|..++++..+....+.|+.+|++.+-.. ...+.|+.|+.|..+. +..-|+.+|++|+..+.+
T Consensus 161 RqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H-P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 161 RQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH-PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999888655 5678899999988888 888888888888888765
Q ss_pred CC-hHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------------------------------------HHhCC
Q 000176 1815 HK-HIKFISQTAILEFKNGVADRGRSMFEGI--------------------------------------------LSEYP 1849 (1924)
Q Consensus 1815 ~~-~~~~~~~~A~le~~~g~~e~Ar~lfe~a--------------------------------------------L~~~P 1849 (1924)
.. .-.++..||.|+..+..+||||.+|.-+ ++.+|
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 42 2357888888888888888888888777 56667
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHH-------H-HHHcCCHHHHHHHHHHHHHHHH
Q 000176 1850 KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLE-------Y-EKSVGEEERIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1850 k~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~-------~-E~~~G~~~~~~~v~~rAle~v~ 1920 (1924)
-+.|.|..|++++...|+.+++|.+|||||. +.||-.-+..|++|+. | |....|.+..+.||+.|++.+-
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIa-nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIP 397 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIA-NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIP 397 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHc-cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcC
Confidence 7889999999999999999999999999999 7888777777777764 3 5556899999999999998653
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=215.84 Aligned_cols=262 Identities=18% Similarity=0.242 Sum_probs=238.2
Q ss_pred HHHHHHHHHhcCC-CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Q 000176 1644 EIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN 1722 (1924)
Q Consensus 1644 ~~~~~e~~~~~~~-~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~ 1722 (1924)
.|..+.+...... ..-++..|..+|...|..-.+|.+.+.|...-|..+....++++|+..+|..+ .+|+.|..
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae-----~lwlM~ak 592 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAE-----ILWLMYAK 592 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcch-----hHHHHHHH
Confidence 4655555544433 66788899999999999999999999999999999999999999999999655 49999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHH
Q 000176 1723 LENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEG 1800 (1924)
Q Consensus 1723 le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~ 1800 (1924)
.....| +...|+.++.+|++++|.. ++|++...+...+.++++|+.+|.++... .....+|+.++.|...+ ..++
T Consensus 593 e~w~ag--dv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~-sgTeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 593 EKWKAG--DVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI-SGTERVWMKSANLERYLDNVEE 669 (913)
T ss_pred HHHhcC--CcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc-CCcchhhHHHhHHHHHhhhHHH
Confidence 988889 6799999999999999875 99999999999999999999999999875 45789999999999999 9999
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1801 VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1801 A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
|+.++++||+.+|.. .++|+..||+|.++++.+.||..|-..++..|....+|..++.++.+.|..-+||.+|+|+.-
T Consensus 670 A~rllEe~lk~fp~f--~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 670 ALRLLEEALKSFPDF--HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred HHHHHHHHHHhCCch--HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 999999999999987 499999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1881 LSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1881 ~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
-.|++. .||..-+.+|.++|+.+.|+.+..+|++-
T Consensus 748 --kNPk~~-~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 748 --KNPKNA-LLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred --cCCCcc-hhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567888 79999999999999999999999999874
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-18 Score=206.70 Aligned_cols=251 Identities=23% Similarity=0.337 Sum_probs=202.3
Q ss_pred hcCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCH
Q 000176 1653 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE 1732 (1924)
Q Consensus 1653 ~~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~ 1732 (1924)
..++.|+++....+++..+|||-++|+.-...+....++|+||.++.+|-...+. + .+|+.|++||.-+++ .
T Consensus 596 ~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-e-----Rv~mKs~~~er~ld~--~ 667 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-E-----RVWMKSANLERYLDN--V 667 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-c-----hhhHHHhHHHHHhhh--H
Confidence 4567888888888888888888888888888888888888888888888754332 2 478888888888884 4
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Q 000176 1733 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1810 (1924)
Q Consensus 1733 e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~ 1810 (1924)
++|..++++|++..|.. ++|+.++++|++.++.+.|++.|...+++.|.+..+|+.++.+..+. +.-+||.+|+|+..
T Consensus 668 eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 668 EEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 88888888888888775 88888888888888888888888888888888888888888887777 88888888888888
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------------------
Q 000176 1811 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR-------------------------- 1864 (1924)
Q Consensus 1811 ~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k-------------------------- 1864 (1924)
.+|+.. .+|+...++|++.|+.+.|+.++-+||+.+|++.-+|..-+.|+-+
T Consensus 748 kNPk~~--~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~ 825 (913)
T KOG0495|consen 748 KNPKNA--LLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAK 825 (913)
T ss_pred cCCCcc--hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHH
Confidence 888774 7888888888888888888888888888888888788776666542
Q ss_pred ----cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1865 ----LGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916 (1924)
Q Consensus 1865 ----~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAl 1916 (1924)
...+++||..|+||+. ..|+.- +.|--+..||..||+.+....|+.++.
T Consensus 826 lfw~e~k~~kar~Wf~Ravk--~d~d~G-D~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 826 LFWSEKKIEKAREWFERAVK--KDPDNG-DAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHc--cCCccc-hHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 1347788999999998 666666 789999999999999999999988875
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-16 Score=190.60 Aligned_cols=255 Identities=19% Similarity=0.328 Sum_probs=210.0
Q ss_pred cCCCCchHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchh--------------hHHH
Q 000176 1654 EKDAPRTPDEFERLVRSS-PN---SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREEN--------------EKLN 1715 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~-P~---s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~--------------ekl~ 1715 (1924)
+++...|+..|++++..+ |. -...|.+++..++...+++.|+.+.++|. ..|.+.+- ..+.
T Consensus 400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~-~vP~~~~~~~yd~~~pvQ~rlhrSlk 478 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT-HVPTNPELEYYDNSEPVQARLHRSLK 478 (835)
T ss_pred cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh-cCCCchhhhhhcCCCcHHHHHHHhHH
Confidence 344888999999998765 32 37899999999999999999999999999 56654221 1348
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHHhc--CCCHHHHHHHHHH
Q 000176 1716 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCD-PKKVHLALLGLYERTEQNKLADELLYKMIKKF--KHSCKVWLRRVQR 1792 (1924)
Q Consensus 1716 lWiayl~le~~~g~~~~e~a~~vferAl~~~~-~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~--~~~~~vw~~~a~~ 1792 (1924)
+|..|+.+|..+| +.++.+.+|+|.+...= .-.+-..|+.+++.+.-++++.++|++.+..| |...++|..|..-
T Consensus 479 iWs~y~DleEs~g--tfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk 556 (835)
T KOG2047|consen 479 IWSMYADLEESLG--TFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK 556 (835)
T ss_pred HHHHHHHHHHHhc--cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH
Confidence 9999999999999 77999999999997643 34888999999999999999999999999877 5778999999988
Q ss_pred HHhc----CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHH-------------------------------
Q 000176 1793 LLKQ----QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRG------------------------------- 1837 (1924)
Q Consensus 1793 l~~~----~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~A------------------------------- 1837 (1924)
+.++ +.+.||.+|++||+.+|....-.+++.||+||.+.|-.-+|
T Consensus 557 fi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~y 636 (835)
T KOG2047|consen 557 FIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIY 636 (835)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Confidence 8776 99999999999999998543336899999999998864444
Q ss_pred -----HHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 000176 1838 -----RSMFEGILSEYPKR--TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEY 1910 (1924)
Q Consensus 1838 -----r~lfe~aL~~~Pk~--~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~ 1910 (1924)
|.+||+|+...|+. .+.-..|++||.+.|.+++||.+|--+-+ -++|+..-.||..|=+||.+|||.+..+.
T Consensus 637 Gv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq-~~dPr~~~~fW~twk~FEvrHGnedT~ke 715 (835)
T KOG2047|consen 637 GVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ-ICDPRVTTEFWDTWKEFEVRHGNEDTYKE 715 (835)
T ss_pred CCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh-cCCCcCChHHHHHHHHHHHhcCCHHHHHH
Confidence 45556667777764 34678899999999999999999988776 46666666899999999999999777665
Q ss_pred HH
Q 000176 1911 VK 1912 (1924)
Q Consensus 1911 v~ 1912 (1924)
.+
T Consensus 716 ML 717 (835)
T KOG2047|consen 716 ML 717 (835)
T ss_pred HH
Confidence 54
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.3e-15 Score=178.65 Aligned_cols=261 Identities=19% Similarity=0.288 Sum_probs=211.8
Q ss_pred cCCCCchHHHHHHHHH-hCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHc
Q 000176 1654 EKDAPRTPDEFERLVR-SSPN-----SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEY 1727 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~-~~P~-----s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~ 1727 (1924)
.++..+....|..++. .+|. -..+|..|+.||...++++.||.+|++|+ ..|+..-.+-.++|++|+.+|+.+
T Consensus 360 e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~-~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT-KVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh-cCCccchHHHHHHHHHHHHHHHhh
Confidence 4456677778888885 4553 46899999999999999999999999999 467764444558999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCC-------------------CHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHH
Q 000176 1728 GNPPEEAVVKVFQRALQYCD-------------------PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLR 1788 (1924)
Q Consensus 1728 g~~~~e~a~~vferAl~~~~-------------------~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~ 1788 (1924)
.+ .+.|..+.++|+...- +..+|..|+.+.+..|-++....+|++++..--..|.+-.+
T Consensus 439 ~~--~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N 516 (835)
T KOG2047|consen 439 EN--FEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN 516 (835)
T ss_pred hh--HHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 94 5999999999986531 12899999999999999999999999999877789999999
Q ss_pred HHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH-HcC--CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Q 000176 1789 RVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEF-KNG--VADRGRSMFEGILSEYPKR--TDLWSIYLDQE 1862 (1924)
Q Consensus 1789 ~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~-~~g--~~e~Ar~lfe~aL~~~Pk~--~dlw~~y~~le 1862 (1924)
||.||... -++++.++|+|.+..++.....++|..|..-.. ++| .+|+||.+||+||..+|.. ..++..|+++|
T Consensus 517 yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 517 YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999987766789998877544 555 7999999999999998842 23899999999
Q ss_pred HHcCCHHHHHHHHHH------------------------------------HHhcCCCchhHHHHHHHHHHHHHHcCCHH
Q 000176 1863 IRLGDVDLIRGLFER------------------------------------AISLSLPPKKMKFLFKKYLEYEKSVGEEE 1906 (1924)
Q Consensus 1863 ~k~gd~~~ar~lfer------------------------------------al~~~~~pk~~k~lw~~yl~~E~~~G~~~ 1906 (1924)
.+.|-..+|..+|+| ||. .+|.++++.+-.+|.+||.+.|.++
T Consensus 597 Ee~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe-~Lp~~~~r~mclrFAdlEtklGEid 675 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE-SLPDSKAREMCLRFADLETKLGEID 675 (835)
T ss_pred HHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH-hCChHHHHHHHHHHHHHhhhhhhHH
Confidence 987765555555544 444 4666667777777777888888888
Q ss_pred HHHHHHHHHHHH
Q 000176 1907 RIEYVKQKAMEY 1918 (1924)
Q Consensus 1907 ~~~~v~~rAle~ 1918 (1924)
+|+.+|.-+-++
T Consensus 676 RARaIya~~sq~ 687 (835)
T KOG2047|consen 676 RARAIYAHGSQI 687 (835)
T ss_pred HHHHHHHhhhhc
Confidence 888877766554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.4e-14 Score=186.55 Aligned_cols=252 Identities=12% Similarity=0.041 Sum_probs=204.2
Q ss_pred CCchHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1657 APRTPDEFERLVRS---SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1657 ~p~a~~~ferll~~---~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
..++...|++++.. .|+...+|..++.++...|++++|...|++++...|.. ...|+.+..+....+ +.+
T Consensus 310 y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~-----~~~~~~la~~~~~~g--~~~ 382 (615)
T TIGR00990 310 YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV-----TQSYIKRASMNLELG--DPD 382 (615)
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHCC--CHH
Confidence 55677788888865 47788888888889999999999999999999766632 346777777777888 458
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 000176 1734 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1811 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~ 1811 (1924)
+|...|++|++..|.. .+|..++.+|...|++++|...|++++...|++...|+.++..+.+. ++++|...|+++++.
T Consensus 383 eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 383 KAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8999999999888764 88999999999999999999999999998888888999999988888 999999999999998
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 000176 1812 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLW-------SIYLDQEIRLGDVDLIRGLFERAISLSLP 1884 (1924)
Q Consensus 1812 ~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw-------~~y~~le~k~gd~~~ar~lferal~~~~~ 1884 (1924)
+|.. ..+|..+|.++...|++++|+..|++++...|+....| ...+.++...|++++|..+|++++. +.
T Consensus 463 ~P~~--~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~--l~ 538 (615)
T TIGR00990 463 FPEA--PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI--ID 538 (615)
T ss_pred CCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cC
Confidence 8876 47888899999999999999999999998888643322 2222233346889999999999988 56
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000176 1885 PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1885 pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~ 1920 (1924)
|... ..|..+.......|+.++|...|++|++..+
T Consensus 539 p~~~-~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 539 PECD-IAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred CCcH-HHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 6665 4677778888888999999999999887654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-13 Score=184.11 Aligned_cols=146 Identities=14% Similarity=0.153 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Q 000176 1733 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1810 (1924)
Q Consensus 1733 e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~ 1810 (1924)
+.|...|++|+...|.. ..|+.++.++...|++++|...|++++...|.++.+|+.++.+++.. ++++|...|++++.
T Consensus 348 ~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~ 427 (615)
T TIGR00990 348 LEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID 427 (615)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444455554444432 44555555555555555555555555555555555555555555544 55555555555555
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1811 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1811 ~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
..|.. ...|..+|.++++.|++++|...|++++..+|+..++|..++.++...|++++|+..|++++.
T Consensus 428 l~P~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 428 LDPDF--IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred cCccC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 55443 244455555555555555555555555555555555555555555555555555555555554
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-14 Score=172.34 Aligned_cols=246 Identities=18% Similarity=0.096 Sum_probs=156.7
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHH---HHHcCCCCHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL---ENEYGNPPEE 1733 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~l---e~~~g~~~~e 1733 (1924)
.-.++..|++++..+|+..++++++...+...+.+|+|...|+||+..-|.. -.+|.|+ +...| ..+
T Consensus 234 i~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~--------A~a~gNla~iYyeqG--~ld 303 (966)
T KOG4626|consen 234 IWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH--------AVAHGNLACIYYEQG--LLD 303 (966)
T ss_pred HHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc--------hhhccceEEEEeccc--cHH
Confidence 3345556666666666666666666666666666666666666666544422 2233333 22334 456
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 000176 1734 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1811 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~ 1811 (1924)
-|...|+||+...|.. ..|..|++.+...|+..+|.+.|.+++...+..++...+++..+..+ .++.|..+|..|+..
T Consensus 304 lAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v 383 (966)
T KOG4626|consen 304 LAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV 383 (966)
T ss_pred HHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 6666666666666654 66666666666666666666666666666666666666666666666 666666666666666
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHH
Q 000176 1812 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFL 1891 (1924)
Q Consensus 1812 ~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~l 1891 (1924)
+|... .....+|.++.++|+++.|..-|..+|+..|...|.++.+...+-..|+...|...|+|||. ..|.-+ ..
T Consensus 384 ~p~~a--aa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~A-eA 458 (966)
T KOG4626|consen 384 FPEFA--AAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFA-EA 458 (966)
T ss_pred Chhhh--hhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHH-HH
Confidence 66552 56666666666666677777777777666666666666666666666666667777777766 555555 45
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1892 FKKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1892 w~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
+.......+..|++.+|..-|+.|+.
T Consensus 459 hsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 459 HSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 66666666666666666666666654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-13 Score=183.18 Aligned_cols=251 Identities=10% Similarity=0.014 Sum_probs=193.5
Q ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000176 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1734 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~ 1734 (1924)
++.++|...|++++..+|++..+|..++..+.+.|++++|...+++++...|...+ .|...+. ....| +.++
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-----a~~~~~~-l~~~g--~~~e 195 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-----MIATCLS-FLNKS--RLPE 195 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-----HHHHHHH-HHHcC--CHHH
Confidence 33556666666666666666666666666666666666666666666655543221 2222222 34456 4477
Q ss_pred HHHHHHHHHhcCCC--HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHH----HHHHHHH
Q 000176 1735 VVKVFQRALQYCDP--KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEG----VQAVVQR 1807 (1924)
Q Consensus 1735 a~~vferAl~~~~~--~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~----A~~l~~r 1807 (1924)
|...|+++++..+. ...+..++..+.+.|++++|...|++++...++++.+|..++..+... ++++ |...|++
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 77777777776542 244455567788899999999999999999999999999999999998 7775 8999999
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 000176 1808 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1887 (1924)
Q Consensus 1808 al~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~ 1887 (1924)
++...|.+ ..++..+|.++...|++++|...|++++...|++..+|..++..+.+.|+++.|...|++++. ..|..
T Consensus 276 Al~l~P~~--~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~--~~P~~ 351 (656)
T PRK15174 276 ALQFNSDN--VRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAR--EKGVT 351 (656)
T ss_pred HHhhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCccc
Confidence 99999976 589999999999999999999999999999999999999999999999999999999999998 56665
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1888 MKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1888 ~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
. .++..........|+.++|...|++|++.
T Consensus 352 ~-~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 352 S-KWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred h-HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5 33433455567789999999999998765
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-14 Score=171.90 Aligned_cols=252 Identities=12% Similarity=0.104 Sum_probs=188.2
Q ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000176 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1734 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~ 1734 (1924)
++..++...|-+++..+|.-..+|.+++-.+..+|++-.|...|++|++..|.-. ..++.+.+.+...+ ..++
T Consensus 198 Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~-----dAYiNLGnV~ke~~--~~d~ 270 (966)
T KOG4626|consen 198 GRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFL-----DAYINLGNVYKEAR--IFDR 270 (966)
T ss_pred cccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcch-----HHHhhHHHHHHHHh--cchH
Confidence 3456666677777777777777777777777777777777777777776555211 22333333333334 3477
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC
Q 000176 1735 VVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1812 (1924)
Q Consensus 1735 a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~ 1812 (1924)
|...|+||+...|.. .+|-.++.+|...|..+-|...|++++..-|..+.+|.+++..+... +..+|.+.|.+||..+
T Consensus 271 Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 271 AVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 777777777777765 66777777788888888888888888888888888888888888888 8888888888888888
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHH
Q 000176 1813 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1892 (1924)
Q Consensus 1813 p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw 1892 (1924)
|.+ .+....+|..+.++|.+|.|..+|+.+|..+|......+.++-++-++|+.+.|...|..||. +.|.-+ +.+
T Consensus 351 p~h--adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fA-da~ 425 (966)
T KOG4626|consen 351 PNH--ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFA-DAL 425 (966)
T ss_pred Ccc--HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHH-HHH
Confidence 776 478888888888888888888888888888888888888888888888888888888888888 777555 345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1893 KKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1893 ~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
...-.-....|+...|...|.||++.
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 55555567778888888888888764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.3e-13 Score=170.59 Aligned_cols=257 Identities=14% Similarity=0.148 Sum_probs=217.5
Q ss_pred hcCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCH
Q 000176 1653 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE 1732 (1924)
Q Consensus 1653 ~~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~ 1732 (1924)
..++..++...|++++..+|++..+|..++.++...|++++|..++++++.. +..........|..++..+...| +.
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~La~~~~~~g--~~ 123 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDLTREQRLLALQELGQDYLKAG--LL 123 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHCC--CH
Confidence 3456788999999999999999999999999999999999999999999964 32222233457888888888889 55
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHhc-CHHHHHHHH
Q 000176 1733 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHS-----CKVWLRRVQRLLKQ-QQEGVQAVV 1805 (1924)
Q Consensus 1733 e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~-----~~vw~~~a~~l~~~-~~~~A~~l~ 1805 (1924)
+.|...|+++++..+.. ..|..++.+|.+.|++++|.+.|+++++..+.. ...|..++..+... ++++|..+|
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999877654 789999999999999999999999999876543 23566788888888 999999999
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 000176 1806 QRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR-TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP 1884 (1924)
Q Consensus 1806 ~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~-~dlw~~y~~le~k~gd~~~ar~lferal~~~~~ 1884 (1924)
+++++..|.. ...+..+|.++.+.|++++|..+|++++...|.. ..+|..++..+.+.|+++.|...|++++. ..
T Consensus 204 ~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~--~~ 279 (389)
T PRK11788 204 KKALAADPQC--VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE--EY 279 (389)
T ss_pred HHHHhHCcCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC
Confidence 9999988775 5788999999999999999999999999988876 35788888999999999999999999998 55
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1885 PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1885 pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
|+.. .+..++.+..+.|+.+.|..+++++++.
T Consensus 280 p~~~--~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 280 PGAD--LLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred CCch--HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 5544 3467778888899999999999988764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.3e-13 Score=179.93 Aligned_cols=251 Identities=11% Similarity=0.074 Sum_probs=204.5
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
.++..++...|++++..+|+++.+|..++..+.+.|++++|...|+++++..|.. ...|..+.+++...| +.+
T Consensus 89 ~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~-----~~a~~~la~~l~~~g--~~~ 161 (656)
T PRK15174 89 SSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGN-----SQIFALHLRTLVLMD--KEL 161 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHCC--ChH
Confidence 3456778888888888888888888888888888888888888888888765542 247777788878888 448
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Q 000176 1734 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFK-HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1810 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~-~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~ 1810 (1924)
.|...|++++...|.. ..|..+ ..+.+.|++++|...|++++..++ .....+...+..+... ++++|...|++++.
T Consensus 162 eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~ 240 (656)
T PRK15174 162 QAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA 240 (656)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 8888888887777654 444443 346778888888888888887764 3334445556677777 99999999999999
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 000176 1811 SLPRHKHIKFISQTAILEFKNGVADR----GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1886 (1924)
Q Consensus 1811 ~~p~~~~~~~~~~~A~le~~~g~~e~----Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk 1886 (1924)
..|.. ..++..+|.+++..|+++. |...|++++...|++..+|..++.++.+.|+++.|...|++++. +.|.
T Consensus 241 ~~p~~--~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~ 316 (656)
T PRK15174 241 RGLDG--AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPD 316 (656)
T ss_pred cCCCC--HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCC
Confidence 88876 5899999999999999885 89999999999999999999999999999999999999999998 7777
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1887 KMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1887 ~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
.. .+|..+.......|+++.+...|+++++
T Consensus 317 ~~-~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 317 LP-YVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred CH-HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77 5788888888889999999999998875
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.2e-15 Score=175.30 Aligned_cols=135 Identities=33% Similarity=0.551 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000176 1784 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK-NGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1861 (1924)
Q Consensus 1784 ~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~-~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~l 1861 (1924)
-+|+.|+.|..+. ..+.||.+|++|++..+. +..+|..+|.+|+. .++.+.|+.+||++++.+|.+.++|..|+++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~--~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC--TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3799999999999 999999999999954332 35899999999998 5678889999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCchh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000176 1862 EIRLGDVDLIRGLFERAISLSLPPKK-MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921 (1924)
Q Consensus 1862 e~k~gd~~~ar~lferal~~~~~pk~-~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~ 1921 (1924)
+++.++.+.||.+|||+++ .++++. ++.+|.+|++||.++|+.+.+..|++|+.+++..
T Consensus 80 l~~~~d~~~aR~lfer~i~-~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 80 LIKLNDINNARALFERAIS-SLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCC-TSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHhCcHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 9999999999999999998 577777 8899999999999999999999999999998754
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.57 E-value=9e-15 Score=175.99 Aligned_cols=255 Identities=19% Similarity=0.274 Sum_probs=121.2
Q ss_pred hcCCCCchHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCC
Q 000176 1653 LEKDAPRTPDEFERLVRS--SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP 1730 (1924)
Q Consensus 1653 ~~~~~p~a~~~ferll~~--~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~ 1730 (1924)
..++.++|.+.+.+.+.. .|++...|..++......++.+.|+..|++++..-+.+. .....++.+ ...++
T Consensus 20 ~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~-----~~~~~l~~l-~~~~~- 92 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANP-----QDYERLIQL-LQDGD- 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----ccccccccc-ccccc-
Confidence 345678888888776654 489999999999999999999999999999997654322 356667777 56674
Q ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHhc-CHHHHHHHHHH
Q 000176 1731 PEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF--KHSCKVWLRRVQRLLKQ-QQEGVQAVVQR 1807 (1924)
Q Consensus 1731 ~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~--~~~~~vw~~~a~~l~~~-~~~~A~~l~~r 1807 (1924)
.++|.++++++.+..+....|..++.++.+.++++++.++++++.... +.++.+|..++.++.+. +.++|...|++
T Consensus 93 -~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 93 -PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred -ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 488999999999877777888999999999999999999999977543 67899999999999999 99999999999
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 000176 1808 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1887 (1924)
Q Consensus 1808 al~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~ 1887 (1924)
|++..|.+ ..++..++.++...|+.++++.+++......|.+..+|..|+..+...|++++|..+|++++. ..|++
T Consensus 172 al~~~P~~--~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~~p~d 247 (280)
T PF13429_consen 172 ALELDPDD--PDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK--LNPDD 247 (280)
T ss_dssp HHHH-TT---HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--HSTT-
T ss_pred HHHcCCCC--HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc--ccccc
Confidence 99999987 488999999999999999999999999999999999999999999999999999999999998 77777
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000176 1888 MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1888 ~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~ 1920 (1924)
. .++..|.+.....|..+.|..++.+|++.++
T Consensus 248 ~-~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l~ 279 (280)
T PF13429_consen 248 P-LWLLAYADALEQAGRKDEALRLRRQALRLLR 279 (280)
T ss_dssp H-HHHHHHHHHHT--------------------
T ss_pred c-ccccccccccccccccccccccccccccccC
Confidence 7 6888999999999999999999999998765
|
|
| >PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.9e-16 Score=180.32 Aligned_cols=148 Identities=17% Similarity=0.256 Sum_probs=128.5
Q ss_pred ccCC-CCCEEEEEEEEEeeceEEEEeC--CCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecc
Q 000176 1363 EDLS-PNMIVQGYVKNVTSKGCFIMLS--RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439 (1924)
Q Consensus 1363 ~~lk-~G~~v~G~V~~v~~~G~fV~l~--~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~ 1439 (1924)
..++ +|++|.|.|++|.++|+||.|. ++++|+||+|+|||.++.++.+.+++||.|.|+|++||+++++|.||+|..
T Consensus 12 ~~~P~~GdvV~g~V~~I~d~GafV~L~EY~gvEGlIhiSElS~~ri~~i~d~vkvGd~v~vkVl~VD~ekg~IdLS~K~v 91 (319)
T PTZ00248 12 QKFPEEDDLVMVKVVRITEMGAYVSLLEYDDIEGMILMSELSKRRIRSINKLIRVGRHEVVVVLRVDKEKGYIDLSKKRV 91 (319)
T ss_pred hhCCCCCCEEEEEEEEEeCCeEEEEecCCCCcEEEEEHHHhcccccCCHHHhcCCCCEEEEEEEEEeCCCCEEEEEeeec
Confidence 3566 8999999999999999999996 589999999999999999999999999999999999999999999999999
Q ss_pred cccccchhccccccccCCCcEEEEEEEEeec-ceEEEE------EecCceeEEeeccccCcccccCcccccC---CCcEE
Q 000176 1440 DSRTASQSEINNLSNLHVGDIVIGQIKRVES-YGLFIT------IENTNLVGLCHVSELSEDHVDNIETIYR---AGEKV 1509 (1924)
Q Consensus 1440 ~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~-~GvFV~------l~~~~v~gl~h~sels~~~~~~~~~~~~---~Gd~V 1509 (1924)
..+||... ...++.|+++.|.|+++.+ ||+|++ .-+ ...++.|.++.+...+.++.+.|. +++.+
T Consensus 92 ~~~pw~~~----~e~~~~g~~v~~~V~~ia~~~g~~~eely~~i~~p-l~~~~gh~y~af~~~v~~~~evl~~l~i~~ev 166 (319)
T PTZ00248 92 SPEDIEAC----EEKFSKSKKVHSIMRHIAQKHGMSVEELYTKIIWP-LYKKYGHALDALKEALTNPDNVFEGLDIPEEV 166 (319)
T ss_pred ccchHHHH----HHhCcCCCEEEEEEEEchhhcCCCHHHHHHHHHHH-HHHhcCCHHHHHHHHhcCchhhhccCCCCHHH
Confidence 98887653 6789999999999999954 999997 334 788999999998887777665666 66655
Q ss_pred EEEEEE
Q 000176 1510 KVKILK 1515 (1924)
Q Consensus 1510 k~~Vl~ 1515 (1924)
+..++.
T Consensus 167 ~~~l~~ 172 (319)
T PTZ00248 167 KESLLQ 172 (319)
T ss_pred HHHHHH
Confidence 554443
|
|
| >COG2996 Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.9e-13 Score=147.10 Aligned_cols=231 Identities=17% Similarity=0.158 Sum_probs=181.2
Q ss_pred cCCCcEEEEEEEEEEcceEEEEEcCC-eEEEeeCcccCCCCCCCCCCCCCCCCEEEEEEEEEcCCCCEEEEEEeeCCCCc
Q 000176 583 ATDRLITHGWITKIEKHGCFVRFYNG-VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV 661 (1924)
Q Consensus 583 ~~~G~~~~G~V~~i~~~G~~V~f~~~-v~g~lp~sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~~ri~lS~k~~~~~~ 661 (1924)
..+|++..+.|....++|+|++=.++ -.-++|+++... +...+|++|++.|.- |. ++|+.++++
T Consensus 3 ~~iG~~~~l~V~~~~~~g~fL~~~~~~~~ilL~k~~~~~-------~e~evGdev~vFiY~-D~-~~rl~aTt~------ 67 (287)
T COG2996 3 IKIGQINSLEVVEFSDFGYFLDAGEDGTTILLPKSEPEE-------DELEVGDEVTVFIYV-DS-EDRLIATTR------ 67 (287)
T ss_pred ccccceEEEEEEEeeceeEEEecCCCceEEeccccCCcC-------CccccCcEEEEEEEE-CC-CCceeheee------
Confidence 45899999999999999999976433 267888887642 247899999999884 64 577788874
Q ss_pred ccccccCCCCEEEEEEEEEc-cCcEEEEEEecCceeEEEeCCcCCCCccchhhhccccCCCCeEeeEEEeecCCCeEEEE
Q 000176 662 SEDDLVKLGSLVSGVVDVVT-PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLS 740 (1924)
Q Consensus 662 ~~~~~~~~G~iv~g~V~~~~-~~g~~V~l~~~~~~~g~i~~~~Lsd~~~~~~~~~~~~~~G~~i~~vl~id~~~~~i~ls 740 (1924)
.+.+++|+.-.++|+++. ..|+||.. +=.-+-+||..+|+-... -|+++||++-.-|.+|+.+ |+ +
T Consensus 68 --~p~~tvg~~g~~~Vv~v~~~lGaFlD~--Gl~KDl~vp~~elp~~~~------~wpq~Gd~l~v~l~~Dkk~-Ri--~ 134 (287)
T COG2996 68 --EPKATVGEYGWLKVVEVNKDLGAFLDW--GLPKDLLVPLDELPTLKS------LWPQKGDKLLVYLYVDKKG-RI--W 134 (287)
T ss_pred --cceEeecceeEEEEEEEcCCcceEEec--CCCcceeeehhhcccccc------cCCCCCCEEEEEEEEccCC-cE--E
Confidence 356789999999999998 67999988 335788999999975322 2789999999888888877 33 3
Q ss_pred ecccccchhccCCCCcCccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEee
Q 000176 741 AKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820 (1924)
Q Consensus 741 ~K~sl~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id 820 (1924)
.+...-+..++++....+--.|+.++|+|.++...|.||-..++.-||+|+|+.-.. .+.||.+++||+.+.
T Consensus 135 g~~a~~~~l~~l~~~~~~~l~nq~v~~tVYr~~~~G~fv~~e~~~~GfIh~sEr~~~--------prlG~~l~~rVi~~r 206 (287)
T COG2996 135 GTLAIEKILENLATPAYNNLKNQEVDATVYRLLESGTFVITENGYLGFIHKSERFAE--------PRLGERLTARVIGVR 206 (287)
T ss_pred EEecchhHHHhcCCccchhhhcCeeeeEEEEEeccceEEEEcCCeEEEEcchhhccc--------ccCCceEEEEEEEEc
Confidence 333333444444443322223999999999999999999999999999999987543 489999999999998
Q ss_pred CCCCeEEEeecccccCC--CchhhHHHHHHHH
Q 000176 821 SETGRITLSLKQSCCSS--TDASFMQEHFLLE 850 (1924)
Q Consensus 821 ~~~~r~~lSlk~~~~~~--~d~~~~~~~~~~~ 850 (1924)
+ ++++.||+++..... .|+++|..||...
T Consensus 207 e-Dg~lnLSl~p~~~E~l~~daq~Il~yL~~~ 237 (287)
T COG2996 207 E-DGKLNLSLRPRAHEMLDEDAQMILTYLESN 237 (287)
T ss_pred c-CCeeecccccccHHhhhhhHHHHHHHHHHc
Confidence 7 999999999986432 7788888888854
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-12 Score=183.61 Aligned_cols=248 Identities=13% Similarity=0.088 Sum_probs=196.7
Q ss_pred CCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000176 1656 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1735 (1924)
Q Consensus 1656 ~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a 1735 (1924)
+.+++...|++++..+|++...|..++..+...+++++|..+++++....|.. ...|..+..+....| +.+.|
T Consensus 650 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g--~~~~A 722 (899)
T TIGR02917 650 NYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKA-----ALGFELEGDLYLRQK--DYPAA 722 (899)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC-----hHHHHHHHHHHHHCC--CHHHH
Confidence 35566666666666666666666666666666666666666666666554432 235666666666777 44888
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC
Q 000176 1736 VKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1814 (1924)
Q Consensus 1736 ~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~ 1814 (1924)
.+.|+++++..|....+..++.++...|++++|.+.++++++..|.+..+++.++..+... ++++|..+|+++++..|.
T Consensus 723 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 802 (899)
T TIGR02917 723 IQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD 802 (899)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC
Confidence 8888888888887788888888888889999999999998888888888888888888888 999999999999988886
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000176 1815 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1894 (1924)
Q Consensus 1815 ~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~ 1894 (1924)
+ ..++..++.++...|+ ++|+.+|++++...|++..+|..++.++...|+++.|..+|++++. ..|.+. .++..
T Consensus 803 ~--~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~~~~~-~~~~~ 876 (899)
T TIGR02917 803 N--AVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVN--IAPEAA-AIRYH 876 (899)
T ss_pred C--HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCh-HHHHH
Confidence 5 5788888888888888 7799999999998898888898899999999999999999999998 555555 57888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 000176 1895 YLEYEKSVGEEERIEYVKQKAM 1916 (1924)
Q Consensus 1895 yl~~E~~~G~~~~~~~v~~rAl 1916 (1924)
+.....+.|+.++|+.++++++
T Consensus 877 l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 877 LALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHh
Confidence 8888888899999988888876
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.5e-15 Score=144.13 Aligned_cols=75 Identities=33% Similarity=0.685 Sum_probs=71.8
Q ss_pred ccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
.+++|+++.|+|++|++||+||+|++ +-+||+||||+++.+++|+.+.+++||.|+|+|++||. +++|+||||..
T Consensus 2 ~~kvG~~l~GkItgI~~yGAFV~l~~-g~tGLVHISEIa~~fVkdI~d~L~vG~eV~vKVl~ide-~GKisLSIr~~ 76 (129)
T COG1098 2 SMKVGSKLKGKITGITPYGAFVELEG-GKTGLVHISEIADGFVKDIHDHLKVGQEVKVKVLDIDE-NGKISLSIRKL 76 (129)
T ss_pred CccccceEEEEEEeeEecceEEEecC-CCcceEEehHhhhhhHHhHHHHhcCCCEEEEEEEeecc-CCCcceehHHh
Confidence 57899999999999999999999987 78999999999999999999999999999999999995 99999999984
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-12 Score=181.67 Aligned_cols=251 Identities=15% Similarity=0.068 Sum_probs=166.8
Q ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000176 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1734 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~ 1734 (1924)
++..++...|++++..+|++...|..++..+...|++++|...|++++...|.. ...|..+..+....+ +.++
T Consensus 479 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~--~~~~ 551 (899)
T TIGR02917 479 GDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKN-----LRAILALAGLYLRTG--NEEE 551 (899)
T ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc-----HHHHHHHHHHHHHcC--CHHH
Confidence 345566677777777777777777777777777777777777777777655532 235666666666666 3477
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC
Q 000176 1735 VVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1812 (1924)
Q Consensus 1735 a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~ 1812 (1924)
|...|+++++..|.. ..|..++.+|...|++++|.++|++++..++.++.+|..++..+... ++++|...|+++++..
T Consensus 552 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 631 (899)
T TIGR02917 552 AVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631 (899)
T ss_pred HHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 777777777666553 66667777777777777777777777766666777777777777766 7777777777777666
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHH
Q 000176 1813 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1892 (1924)
Q Consensus 1813 p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw 1892 (1924)
|.+ ...|..+|.++...|++++|...|++++...|++...|..++.++...|+++.|..+|+++.. ..|... ..|
T Consensus 632 ~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~-~~~ 706 (899)
T TIGR02917 632 PDS--ALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK--QHPKAA-LGF 706 (899)
T ss_pred CCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCh-HHH
Confidence 654 356667777777777777777777777777777666777666666666666666666666665 333333 345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1893 KKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1893 ~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
..........|+.+.|...|.++++
T Consensus 707 ~~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 707 ELEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4455555556666666666666554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.7e-12 Score=182.55 Aligned_cols=258 Identities=10% Similarity=0.076 Sum_probs=195.0
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhH--------------------
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEK-------------------- 1713 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ek-------------------- 1713 (1924)
.++.++|...|++++..+|++..+|..++..+...|++++|++.|+++++..|.....-.
T Consensus 364 ~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~ 443 (1157)
T PRK11447 364 ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIAS 443 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 456889999999999999999999999999999999999999999999987665321100
Q ss_pred -----------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHH
Q 000176 1714 -----------------LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKM 1775 (1924)
Q Consensus 1714 -----------------l~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~ 1775 (1924)
...|..........+ +.++|.+.|++|++..|.. .+|+.++.+|.+.|++++|...|+++
T Consensus 444 l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g--~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~a 521 (1157)
T PRK11447 444 LSASQRRSIDDIERSLQNDRLAQQAEALENQG--KWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRL 521 (1157)
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 001112223334456 4599999999999999875 88999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHH----------------------------------------HHhCCC
Q 000176 1776 IKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRA----------------------------------------LLSLPR 1814 (1924)
Q Consensus 1776 lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ra----------------------------------------l~~~p~ 1814 (1924)
+...|.++..|+.++.++... +.++|...|+++ +...|.
T Consensus 522 l~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~ 601 (1157)
T PRK11447 522 AQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPP 601 (1157)
T ss_pred HHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 998888888888777766655 666666555432 112333
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000176 1815 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1894 (1924)
Q Consensus 1815 ~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~ 1894 (1924)
+ ..++..+|.++.+.|++++|+..|+++++..|++.++|..++.++...|++++|+..|++++. ..|... .++..
T Consensus 602 ~--~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~-~~~~~ 676 (1157)
T PRK11447 602 S--TRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSL-NTQRR 676 (1157)
T ss_pred C--chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCCh-HHHHH
Confidence 3 356677778888888888888888888888888888888888888888888888888887776 555555 45555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1895 YLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1895 yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
+.......|+.++|..+++++++.
T Consensus 677 la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 677 VALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhh
Confidence 566666677777777777777654
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.1e-12 Score=181.99 Aligned_cols=203 Identities=13% Similarity=0.073 Sum_probs=165.3
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHH-------HHHHH--HHHHH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL-------NIWVA--YFNLE 1724 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl-------~lWia--yl~le 1724 (1924)
.++.+++...|++++..+|++..+|..++..+.+.+++++|+..|+++++..|......+. ..|.. .....
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 4557899999999999999999999999999999999999999999999877743321110 12322 23344
Q ss_pred HHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHH-----------
Q 000176 1725 NEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR----------- 1792 (1924)
Q Consensus 1725 ~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~----------- 1792 (1924)
...+ +.++|...|++|++..|.. ..|..++.+|...|++++|.+.|+++++..|.+..+|..++.+
T Consensus 362 ~~~g--~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~ 439 (1157)
T PRK11447 362 LKAN--NLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALA 439 (1157)
T ss_pred HHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHH
Confidence 5667 4599999999999998875 7899999999999999999999999999988888777655443
Q ss_pred -------------------------------HHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 000176 1793 -------------------------------LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1840 (1924)
Q Consensus 1793 -------------------------------l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~l 1840 (1924)
+... ++++|.+.|+++++..|.+ ..++..+|.++++.|++++|...
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~--~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS--VWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Confidence 2345 8899999999999999987 47889999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHH
Q 000176 1841 FEGILSEYPKRTDLWSIYLD 1860 (1924)
Q Consensus 1841 fe~aL~~~Pk~~dlw~~y~~ 1860 (1924)
|++++...|.+.+.+..++.
T Consensus 518 l~~al~~~P~~~~~~~a~al 537 (1157)
T PRK11447 518 MRRLAQQKPNDPEQVYAYGL 537 (1157)
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 99999888877665544433
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4e-12 Score=172.86 Aligned_cols=248 Identities=13% Similarity=0.010 Sum_probs=204.3
Q ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000176 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1734 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~ 1734 (1924)
+...++...|.+++...|++. .++.++..+.+.|++++|...|++++...|. . ..|..+..+....| +.++
T Consensus 490 ~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~-----~a~~~la~all~~G--d~~e 560 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS-N-----EDLLAAANTAQAAG--NGAA 560 (987)
T ss_pred CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-c-----HHHHHHHHHHHHCC--CHHH
Confidence 345568888999999999754 3555566667899999999999998755332 2 24777788888888 5699
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC
Q 000176 1735 VVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1812 (1924)
Q Consensus 1735 a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~ 1812 (1924)
|...|++|++..|.. ..+..++..+...|++++|...|++++...|. ..+|..++..+.+. ++++|...|++++...
T Consensus 561 A~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~ 639 (987)
T PRK09782 561 RDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELE 639 (987)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999999988764 55555555556679999999999999999885 89999999999999 9999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHH
Q 000176 1813 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1892 (1924)
Q Consensus 1813 p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw 1892 (1924)
|.+ ..++..+|.++...|++++|+..|+++++..|.+.++|..++..+...|+++.|+..|++++. +.|..+ .+-
T Consensus 640 Pd~--~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a-~i~ 714 (987)
T PRK09782 640 PNN--SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQA-LIT 714 (987)
T ss_pred CCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCc-hhh
Confidence 987 589999999999999999999999999999999999999999999999999999999999998 777776 466
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1893 KKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1893 ~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
..|..++....+++++.+-+.|+..
T Consensus 715 ~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 715 PLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 6666666666666666666655543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.3e-12 Score=151.15 Aligned_cols=237 Identities=19% Similarity=0.279 Sum_probs=196.1
Q ss_pred CHHHHHHHHHHHHHcC------CH--HHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCC-------C-----CHH
Q 000176 1674 SSFVWIKYMAFMLSMA------DV--EKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN-------P-----PEE 1733 (1924)
Q Consensus 1674 s~~~W~~y~~~~~~~~------e~--dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~-------~-----~~e 1733 (1924)
...+|.+++.++.... .+ .+..=+|+++|...++.++ +|..|..+....+. . -.+
T Consensus 236 qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~pe-----iWy~~s~yl~~~s~l~~~~~d~~~a~~~t~ 310 (656)
T KOG1914|consen 236 QVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPE-----IWYDYSMYLIEISDLLTEKGDVPDAKSLTD 310 (656)
T ss_pred HHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHhhHHHHHhcccccchhhHH
Confidence 3578999999987543 22 2334567999988887664 99988777666551 0 158
Q ss_pred HHHHHHHHHHhcCCC--HHHHHHHHHHHHHhCC---hHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHhc-CHHHHHHHHH
Q 000176 1734 AVVKVFQRALQYCDP--KKVHLALLGLYERTEQ---NKLADELLYKMIKKFKHSC-KVWLRRVQRLLKQ-QQEGVQAVVQ 1806 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~--~~i~~~l~~i~~~~gk---~e~A~~~fe~~lk~~~~~~-~vw~~~a~~l~~~-~~~~A~~l~~ 1806 (1924)
++..+|+|++..-.. .-+|++|+...+..-+ ++..-++|+++++++...+ -+|..|..|..+. -...||.+|.
T Consensus 311 e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~ 390 (656)
T KOG1914|consen 311 EAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFK 390 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHH
Confidence 899999999987654 3788888888776655 8999999999999885444 4699999999999 9999999999
Q ss_pred HHHHhCCCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 000176 1807 RALLSLPRHKHIKFISQTAILEF-KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPP 1885 (1924)
Q Consensus 1807 ral~~~p~~~~~~~~~~~A~le~-~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~p 1885 (1924)
+|-+.--... .++..-|.+|+ -.+|.+-|..+|+-.|+.+++....-..|++++...++-..||.+|||++...+++
T Consensus 391 kaR~~~r~~h--hVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~ 468 (656)
T KOG1914|consen 391 KAREDKRTRH--HVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA 468 (656)
T ss_pred HHhhccCCcc--hhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh
Confidence 9987654442 67888888877 46799999999999999999999999999999999999999999999999966899
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1886 KKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1886 k~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
++.+.+|.+|++||...||.+.+.++-+|-..
T Consensus 469 ~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 469 DKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999999999999888766543
|
|
| >COG2996 Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.3e-12 Score=141.28 Aligned_cols=216 Identities=19% Similarity=0.155 Sum_probs=169.1
Q ss_pred cCCCCEEEEEEEEEecCcCeEEEEeCCce-EEEEecccccccccCCCCCCCCCCCEEEEEEEEEecccCCceEEEEeeec
Q 000176 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHL-YGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335 (1924)
Q Consensus 1257 i~~G~~v~g~V~~v~~~~~g~~V~l~~~~-~G~v~~selsd~~~~~p~~~~~~G~~v~~~Vl~vd~~~~~~~~i~LSlr~ 1335 (1924)
+.+|++..+.|.+.+.+ |+|++=+.+- .-++|.++.. .....+|+.|.+.|+- |. .+++.++++.
T Consensus 3 ~~iG~~~~l~V~~~~~~--g~fL~~~~~~~~ilL~k~~~~-------~~e~evGdev~vFiY~-D~----~~rl~aTt~~ 68 (287)
T COG2996 3 IKIGQINSLEVVEFSDF--GYFLDAGEDGTTILLPKSEPE-------EDELEVGDEVTVFIYV-DS----EDRLIATTRE 68 (287)
T ss_pred ccccceEEEEEEEeece--eEEEecCCCceEEeccccCCc-------CCccccCcEEEEEEEE-CC----CCceeheeec
Confidence 34999999999999999 9999987543 5566666542 2345699999999776 43 3578877766
Q ss_pred cccCCCCCCCCCCCCCCCCCcchhhhhccCCCCCEEEEEEEEEe-eceEEEEeCCCcEEEEECccCCCcccCCCCccCCC
Q 000176 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI 1414 (1924)
Q Consensus 1336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~G~~v~G~V~~v~-~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~ 1414 (1924)
+. ..+|+.-.+.|+.+. +-|+|++.|-.-+.+|++++++....-+| ++
T Consensus 69 p~---------------------------~tvg~~g~~~Vv~v~~~lGaFlD~Gl~KDl~vp~~elp~~~~~wp----q~ 117 (287)
T COG2996 69 PK---------------------------ATVGEYGWLKVVEVNKDLGAFLDWGLPKDLLVPLDELPTLKSLWP----QK 117 (287)
T ss_pred ce---------------------------EeecceeEEEEEEEcCCcceEEecCCCcceeeehhhcccccccCC----CC
Confidence 54 568999999999998 89999999988999999999986433334 48
Q ss_pred CcEEEEEEEEEeCCCCEEEEEeecccccccchhccccccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcc
Q 000176 1415 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED 1494 (1924)
Q Consensus 1415 G~~V~~kVl~vd~e~~ri~LSlk~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~ 1494 (1924)
|+.+-++ +.+|. .+||.-+++.-..-. ........+ -.+|.+.|+|.+....|.||-+++ +.-|++|.||....
T Consensus 118 Gd~l~v~-l~~Dk-k~Ri~g~~a~~~~l~--~l~~~~~~~-l~nq~v~~tVYr~~~~G~fv~~e~-~~~GfIh~sEr~~~ 191 (287)
T COG2996 118 GDKLLVY-LYVDK-KGRIWGTLAIEKILE--NLATPAYNN-LKNQEVDATVYRLLESGTFVITEN-GYLGFIHKSERFAE 191 (287)
T ss_pred CCEEEEE-EEEcc-CCcEEEEecchhHHH--hcCCccchh-hhcCeeeeEEEEEeccceEEEEcC-CeEEEEcchhhccc
Confidence 9999988 56785 559998887644311 110001112 259999999999999999999976 99999999996554
Q ss_pred cccCcccccCCCcEEEEEEEEEecCCCeeEEecccccc
Q 000176 1495 HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1532 (1924)
Q Consensus 1495 ~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s~~ 1532 (1924)
.+.|++++++|+.+.. +++|.||+++.-+
T Consensus 192 --------prlG~~l~~rVi~~re-Dg~lnLSl~p~~~ 220 (287)
T COG2996 192 --------PRLGERLTARVIGVRE-DGKLNLSLRPRAH 220 (287)
T ss_pred --------ccCCceEEEEEEEEcc-CCeeecccccccH
Confidence 5899999999999995 9999999999644
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-11 Score=166.80 Aligned_cols=245 Identities=12% Similarity=0.000 Sum_probs=212.4
Q ss_pred hHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHH
Q 000176 1660 TPDEFERLVRSSPN--SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1737 (1924)
Q Consensus 1660 a~~~ferll~~~P~--s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~ 1737 (1924)
+-..+.+++..+|. ++.+|..++.++.. ++.++|...+.+++...|... .++.+.......| +.++|..
T Consensus 460 ~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~------~~L~lA~al~~~G--r~eeAi~ 530 (987)
T PRK09782 460 NCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW------QHRAVAYQAYQVE--DYATALA 530 (987)
T ss_pred hHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH------HHHHHHHHHHHCC--CHHHHHH
Confidence 34456666677788 99999999999987 799999999999998887411 1333344445678 5699999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC
Q 000176 1738 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1816 (1924)
Q Consensus 1738 vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~ 1816 (1924)
.|++++...+....|..++.++.+.|++++|...|+++++..+....++..++..+... ++++|...|+++++..|.
T Consensus 531 ~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-- 608 (987)
T PRK09782 531 AWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-- 608 (987)
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--
Confidence 99999887777778999999999999999999999999998888877777776666666 999999999999999994
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000176 1817 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1896 (1924)
Q Consensus 1817 ~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl 1896 (1924)
..+|..+|.++.+.|++++|...|++++...|++..+|..++..+...|+++.|+.+|++++. +.|... .+|....
T Consensus 609 -~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~-~a~~nLA 684 (987)
T PRK09782 609 -ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDP-ALIRQLA 684 (987)
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCH-HHHHHHH
Confidence 489999999999999999999999999999999999999999999999999999999999999 888888 5788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHH
Q 000176 1897 EYEKSVGEEERIEYVKQKAMEYV 1919 (1924)
Q Consensus 1897 ~~E~~~G~~~~~~~v~~rAle~v 1919 (1924)
......|+.+.|+..+++|++.-
T Consensus 685 ~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 685 YVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC
Confidence 88888999999999999998753
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-12 Score=158.50 Aligned_cols=254 Identities=17% Similarity=0.105 Sum_probs=220.7
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchh-------------------------
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREEN------------------------- 1711 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~------------------------- 1711 (1924)
-.+|...|+++-...+|......+.+..|..++++++|+++|+++-+.-|++-+.
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li 414 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLI 414 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4567888999556778888777899999999999999999999999888876211
Q ss_pred ----hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHH
Q 000176 1712 ----EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVW 1786 (1924)
Q Consensus 1712 ----ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw 1786 (1924)
.+.+-|.+..|++..+++ -++|.+.|+||+|.+|.. =.|..++.=+.....++.|...|..++...+....+|
T Consensus 415 ~~~~~sPesWca~GNcfSLQkd--h~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAw 492 (638)
T KOG1126|consen 415 DTDPNSPESWCALGNCFSLQKD--HDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAW 492 (638)
T ss_pred hhCCCCcHHHHHhcchhhhhhH--HHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHH
Confidence 122789999999999994 499999999999999965 5677777777888999999999999999999999999
Q ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 000176 1787 LRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1865 (1924)
Q Consensus 1787 ~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~ 1865 (1924)
+-++..++++ +++.|.-.|++|+..+|.+ ..+...++.++.+.|+.|+|..+|++|+..+|++..-.+..+.+++..
T Consensus 493 YGlG~vy~Kqek~e~Ae~~fqkA~~INP~n--svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~ 570 (638)
T KOG1126|consen 493 YGLGTVYLKQEKLEFAEFHFQKAVEINPSN--SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSL 570 (638)
T ss_pred HhhhhheeccchhhHHHHHHHhhhcCCccc--hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhh
Confidence 9999999999 9999999999999999988 478889999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1866 GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1866 gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
+++++|...||.+-. +.|+.. ..+........+.|..+-|..-|--|++
T Consensus 571 ~~~~eal~~LEeLk~--~vP~es-~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 571 GRYVEALQELEELKE--LVPQES-SVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred cchHHHHHHHHHHHH--hCcchH-HHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 999999999999887 888888 6777777778888888777666655543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.4e-11 Score=153.67 Aligned_cols=252 Identities=12% Similarity=0.066 Sum_probs=207.8
Q ss_pred cCCCCchHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCC
Q 000176 1654 EKDAPRTPDEFERLVRSSPNS----SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN 1729 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s----~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~ 1729 (1924)
.++.+++...|++++...+.. ...|..++..+...|++++|..+|+++++..|.. ...|..++.+....+
T Consensus 82 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~-----~~~~~~la~~~~~~g- 155 (389)
T PRK11788 82 RGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFA-----EGALQQLLEIYQQEK- 155 (389)
T ss_pred cCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcch-----HHHHHHHHHHHHHhc-
Confidence 345778888898887643322 3678899999999999999999999999764432 347888888888889
Q ss_pred CCHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHH
Q 000176 1730 PPEEAVVKVFQRALQYCDPK------KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQ 1802 (1924)
Q Consensus 1730 ~~~e~a~~vferAl~~~~~~------~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~ 1802 (1924)
+.++|.+.|+++++..+.. ..|..++.++.+.+++++|...|+++++..+.....|+.++..+.+. ++++|.
T Consensus 156 -~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 234 (389)
T PRK11788 156 -DWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAI 234 (389)
T ss_pred -hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4599999999999876542 35678888999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 000176 1803 AVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1882 (1924)
Q Consensus 1803 ~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~ 1882 (1924)
++|++++...|... ..++..++..+...|++++|...|++++...|+. ..+..++.++.+.|++++|..+|++++.
T Consensus 235 ~~~~~~~~~~p~~~-~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~-- 310 (389)
T PRK11788 235 EALERVEEQDPEYL-SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA-DLLLALAQLLEEQEGPEAAQALLREQLR-- 310 (389)
T ss_pred HHHHHHHHHChhhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHH--
Confidence 99999998877542 4678889999999999999999999999999986 4558899999999999999999999998
Q ss_pred CCchhHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHH
Q 000176 1883 LPPKKMKFLFKKYLEYEKS---VGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1883 ~~pk~~k~lw~~yl~~E~~---~G~~~~~~~v~~rAle~ 1918 (1924)
..|+.. .|..++..... +|...++..++++.++.
T Consensus 311 ~~P~~~--~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 311 RHPSLR--GFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred hCcCHH--HHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 566655 34444544332 56778888888877753
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-11 Score=145.85 Aligned_cols=240 Identities=16% Similarity=0.161 Sum_probs=200.5
Q ss_pred HhcCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCC
Q 000176 1652 LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1731 (1924)
Q Consensus 1652 ~~~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~ 1731 (1924)
++.++.-.+..+|+.+|..+|....++|..+..+++..+.++-...|..|....|... .++.....+....+ +
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~-----dvYyHRgQm~flL~--q 409 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENP-----DVYYHRGQMRFLLQ--Q 409 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC-----chhHhHHHHHHHHH--H
Confidence 3467788999999999999999888899999999999999999999999998766544 36666666655666 4
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHH
Q 000176 1732 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1809 (1924)
Q Consensus 1732 ~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral 1809 (1924)
.+.|..-|++|+...|.. -.|++++-...+.++++++...|+.+.++||..+.+|..+++.|..+ ++++|.+.|..|+
T Consensus 410 ~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 410 YEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 499999999999999987 67888998888999999999999999999999999999999999999 9999999999999
Q ss_pred HhCCCCCh----HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 000176 1810 LSLPRHKH----IKFISQTAILEF-KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP 1884 (1924)
Q Consensus 1810 ~~~p~~~~----~~~~~~~A~le~-~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~ 1884 (1924)
..-|.... +..+..-|.+.+ -.+++.+|..++++++..+|+....+..+++++.++|++++|.++||.++. +.
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~--lA 567 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ--LA 567 (606)
T ss_pred hhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HH
Confidence 99887211 122333333333 348999999999999999999999999999999999999999999999997 55
Q ss_pred chhHHHHHHHHHHHHHH
Q 000176 1885 PKKMKFLFKKYLEYEKS 1901 (1924)
Q Consensus 1885 pk~~k~lw~~yl~~E~~ 1901 (1924)
...+ .....|---|.-
T Consensus 568 rt~~-E~~~a~s~aeAA 583 (606)
T KOG0547|consen 568 RTES-EMVHAYSLAEAA 583 (606)
T ss_pred HhHH-HHHHHHHHHHHH
Confidence 4433 455555544443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-11 Score=132.44 Aligned_cols=193 Identities=17% Similarity=0.111 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000176 1715 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1793 (1924)
Q Consensus 1715 ~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l 1793 (1924)
+..+.+.--+++.| +...|+.-+++|++..|.. ..|..++.+|.+.|..+.|.+.|+++++..|.+.++..+|+.||
T Consensus 36 ~arlqLal~YL~~g--d~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQG--DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHH
Confidence 44445444456678 5699999999999999986 99999999999999999999999999999999999999999999
Q ss_pred Hhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 000176 1794 LKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR 1872 (1924)
Q Consensus 1794 ~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar 1872 (1924)
-.+ ++++|...|++|+..---..+...|.+.+..-++.|+.+.|+.+|+++|..+|++......+++++++.|++-.||
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 999 9999999999999753333456899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000176 1873 GLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVK 1912 (1924)
Q Consensus 1873 ~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~ 1912 (1924)
..|++... ... -.+..+|..| .+++..||...+.+.-
T Consensus 194 ~~~~~~~~-~~~-~~A~sL~L~i-riak~~gd~~~a~~Y~ 230 (250)
T COG3063 194 LYLERYQQ-RGG-AQAESLLLGI-RIAKRLGDRAAAQRYQ 230 (250)
T ss_pred HHHHHHHh-ccc-ccHHHHHHHH-HHHHHhccHHHHHHHH
Confidence 99999888 333 4455677765 7899999988766543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-12 Score=158.01 Aligned_cols=215 Identities=16% Similarity=0.152 Sum_probs=120.2
Q ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000176 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1734 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~ 1734 (1924)
++.+++...|++++..+|.++..+.+++.+ ...+++++|..+++++.+..+. ...|..++.+....+ +.+.
T Consensus 58 ~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~------~~~l~~~l~~~~~~~--~~~~ 128 (280)
T PF13429_consen 58 GDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGD------PRYLLSALQLYYRLG--DYDE 128 (280)
T ss_dssp -------------------------------------------------------------------H-HHHTT---HHH
T ss_pred cccccccccccccccccccccccccccccc-cccccccccccccccccccccc------cchhhHHHHHHHHHh--HHHH
Confidence 457788999999999999999999999998 7999999999999998865442 246888888888888 5699
Q ss_pred HHHHHHHHHhcC--C-CHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Q 000176 1735 VVKVFQRALQYC--D-PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1810 (1924)
Q Consensus 1735 a~~vferAl~~~--~-~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~ 1810 (1924)
+..+++++.+.. + +..+|..++.++.+.|+.++|...|+++++..|++..++..++.++... +.+++++++.+..+
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~ 208 (280)
T PF13429_consen 129 AEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLK 208 (280)
T ss_dssp HHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 999999988655 2 2489999999999999999999999999999999999999999999988 99999999999998
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1811 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1811 ~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
..|.+. .+|..+|..++..|++++|..+|+++++..|++..++..|++.+...|+.++|..++.+++.
T Consensus 209 ~~~~~~--~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 209 AAPDDP--DLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp H-HTSC--CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HCcCHH--HHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 887664 78999999999999999999999999999999999999999999999999999999999876
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.2e-11 Score=146.07 Aligned_cols=250 Identities=17% Similarity=0.264 Sum_probs=195.4
Q ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 000176 1660 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVF 1739 (1924)
Q Consensus 1660 a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vf 1739 (1924)
.+..|...|...|.+...|.+||.++.+.|..+.+.++|+|++..+|.+ +.+|+.|+++...... +++..+..|
T Consensus 64 ~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~S-----vdlW~~Y~~f~~n~~~-d~~~lr~~f 137 (577)
T KOG1258|consen 64 LREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLS-----VDLWLSYLAFLKNNNG-DPETLRDLF 137 (577)
T ss_pred HHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhH-----HHHHHHHHHHHhccCC-CHHHHHHHH
Confidence 4567888999999999999999999999999999999999999999974 4699999999775432 678899999
Q ss_pred HHHHhcCCCH----HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHhc------CH----------
Q 000176 1740 QRALQYCDPK----KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCK-VWLRRVQRLLKQ------QQ---------- 1798 (1924)
Q Consensus 1740 erAl~~~~~~----~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~-vw~~~a~~l~~~------~~---------- 1798 (1924)
+||..++... .+|-.|+.+.....+......+|++.+........ .+.+|-+++-+. ..
T Consensus 138 e~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~ 217 (577)
T KOG1258|consen 138 ERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDV 217 (577)
T ss_pred HHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhH
Confidence 9999998753 99999999998888999999999998876432222 222333333221 11
Q ss_pred ------------------------------HHHHHHHHH------------------------HHHhC-----CC-CChH
Q 000176 1799 ------------------------------EGVQAVVQR------------------------ALLSL-----PR-HKHI 1818 (1924)
Q Consensus 1799 ------------------------------~~A~~l~~r------------------------al~~~-----p~-~~~~ 1818 (1924)
+.+...+.+ .++.- |- ....
T Consensus 218 ~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql 297 (577)
T KOG1258|consen 218 AERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQL 297 (577)
T ss_pred HhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHH
Confidence 111111111 11110 00 1225
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000176 1819 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1898 (1924)
Q Consensus 1819 ~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~ 1898 (1924)
..|..|+.++...|++++..-+|++++-.+.....+|..|+.+....|+.+-|..++.++.. ..-++...+-..|..|
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~--i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACK--IHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhh--hcCCCCcHHHHHHHHH
Confidence 78999999999999999999999999988888888999999999999999999999999988 3333333789999999
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 000176 1899 EKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1899 E~~~G~~~~~~~v~~rAle 1917 (1924)
|+..|++..|+.++++..+
T Consensus 376 ~e~~~n~~~A~~~lq~i~~ 394 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIES 394 (577)
T ss_pred HHhhccHHHHHHHHHHHHh
Confidence 9999999999999988754
|
|
| >cd05693 S1_Rrp5_repeat_hs1_sc1 S1_Rrp5_repeat_hs1_sc1: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.6e-13 Score=132.59 Aligned_cols=90 Identities=40% Similarity=0.590 Sum_probs=74.8
Q ss_pred cCcccEEEEEEEEEecccEEEEcCCCcEEEEeccccCchhhcc---c-------cccccCCCCCCcccCCCEEEEEEEEe
Q 000176 131 ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDN---E-------IEANEDNLLPTIFHVGQLVSCIVLQL 200 (1924)
Q Consensus 131 l~~G~~~lg~V~~i~~~~l~vslp~~l~g~v~~~~is~~~~~~---~-------~~~~~~~~l~~~f~~Gq~v~~~V~~~ 200 (1924)
|++||.|+|+|.+|++.++.|+||+++.|||++++||+.|... . ..+.+...+.++|++||.|+|+|+++
T Consensus 1 L~~G~vV~G~V~~v~~~gl~v~L~~g~~G~v~~seis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~vGd~V~~kVi~~ 80 (100)
T cd05693 1 LSEGMLVLGQVKEITKLDLVISLPNGLTGYVPITNISDAYTERLEELDEESEEEDDEEELPDLEDLFSVGQLVRCKVVSL 80 (100)
T ss_pred CCCCCEEEEEEEEEcCCCEEEECCCCcEEEEEHHHhhHHHHHHHHHhhhhccccccccccCCHHHhccCCCEEEEEEEEc
Confidence 6799999999999999999999999999999999999976211 0 01122346889999999999999999
Q ss_pred ecCccccceeEEEEEechhhhc
Q 000176 201 DDDKKEIGKRKIWLSLRLSLLY 222 (1924)
Q Consensus 201 ~~~~~~~~~~~i~LSl~p~~vn 222 (1924)
++.++ ++++|.|||+|++||
T Consensus 81 d~~~~--~~~~i~LSlr~~~vn 100 (100)
T cd05693 81 DKSKS--GKKRIELSLEPELVN 100 (100)
T ss_pred cCCcC--CCcEEEEEecHHHCC
Confidence 87532 157999999999998
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 1 (hs1) and S. cerevisiae S1 repeat 1 (sc1). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.5e-13 Score=124.24 Aligned_cols=71 Identities=21% Similarity=0.445 Sum_probs=66.3
Q ss_pred cCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccC---cccccCCCcEEEEEEEEEecCCCeeEEe
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN---IETIYRAGEKVKVKILKVDKEKRRISLG 1526 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~---~~~~~~~Gd~Vk~~Vl~id~e~~ri~ls 1526 (1924)
+++|++|.|+|+++++||+||.|++ ++.|++|++|++|.++.+ +.+.|++||.|+|+|+++|++++||.||
T Consensus 1 ~k~G~~V~g~V~~i~~~G~fV~l~~-~v~G~v~~~~ls~~~~~~~~~~~~~~~~G~~v~~kVl~id~~~~~i~LS 74 (74)
T cd05705 1 IKEGQLLRGYVSSVTKQGVFFRLSS-SIVGRVLFQNVTKYFVSDPSLYNKYLPEGKLLTAKVLSVNSEKNLVELS 74 (74)
T ss_pred CCCCCEEEEEEEEEeCCcEEEEeCC-CCEEEEEHHHccCccccChhhHhcccCCCCEEEEEEEEEECCCCEEecC
Confidence 5799999999999999999999986 899999999999998766 4589999999999999999999999886
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.9e-11 Score=157.66 Aligned_cols=244 Identities=10% Similarity=-0.063 Sum_probs=195.2
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHc
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSM---------ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEY 1727 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~---------~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~ 1727 (1924)
..+|...|++++..+|++..+|..++.++... +++++|...+++|++..|... ..|..+..+....
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~-----~a~~~lg~~~~~~ 351 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNP-----QALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHc
Confidence 45788899999999999999998888776532 358999999999998777533 4788888888888
Q ss_pred CCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHH
Q 000176 1728 GNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVV 1805 (1924)
Q Consensus 1728 g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~ 1805 (1924)
+ +.++|...|++|++.+|.. ..|+.++.+|...|++++|...|++++...|..+..++.++..++.. ++++|...+
T Consensus 352 g--~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 S--EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred c--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 8 4599999999999999985 89999999999999999999999999999998877766666556667 999999999
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-C
Q 000176 1806 QRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL-P 1884 (1924)
Q Consensus 1806 ~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~-~ 1884 (1924)
++++...|... +..+..+|.++...|++++|+..|++++...|.....|...+..+...|+ +|+..+++++.... .
T Consensus 430 ~~~l~~~~p~~-~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 430 DELRSQHLQDN-PILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRI 506 (553)
T ss_pred HHHHHhccccC-HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHh
Confidence 99998864332 57888999999999999999999999999999888888888888888774 78887877665211 1
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000176 1885 PKKMKFLFKKYLEYEKSVGEEERIEYVKQKA 1915 (1924)
Q Consensus 1885 pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rA 1915 (1924)
+.. ..| +..++.-+|+.+.+... +++
T Consensus 507 ~~~--~~~--~~~~~~~~g~~~~~~~~-~~~ 532 (553)
T PRK12370 507 DNN--PGL--LPLVLVAHGEAIAEKMW-NKF 532 (553)
T ss_pred hcC--chH--HHHHHHHHhhhHHHHHH-HHh
Confidence 111 122 44566667777665554 443
|
|
| >COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.4e-13 Score=132.26 Aligned_cols=77 Identities=30% Similarity=0.486 Sum_probs=73.7
Q ss_pred ccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000176 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1924)
Q Consensus 758 ~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~~ 835 (1924)
.+++|++++|.|+.|++||+||+|++|=+||+|+|++.++|+.++.+++++||.|.|+|+++|. ++++.||+|....
T Consensus 2 ~~kvG~~l~GkItgI~~yGAFV~l~~g~tGLVHISEIa~~fVkdI~d~L~vG~eV~vKVl~ide-~GKisLSIr~~~e 78 (129)
T COG1098 2 SMKVGSKLKGKITGITPYGAFVELEGGKTGLVHISEIADGFVKDIHDHLKVGQEVKVKVLDIDE-NGKISLSIRKLEE 78 (129)
T ss_pred CccccceEEEEEEeeEecceEEEecCCCcceEEehHhhhhhHHhHHHHhcCCCEEEEEEEeecc-CCCcceehHHhhh
Confidence 3678999999999999999999999999999999999999999999999999999999999998 9999999998754
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.8e-11 Score=139.00 Aligned_cols=248 Identities=13% Similarity=0.110 Sum_probs=198.2
Q ss_pred CchHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000176 1658 PRTPDEFERLVRS-SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1736 (1924)
Q Consensus 1658 p~a~~~ferll~~-~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~ 1736 (1924)
.++...+++++.. .|++..+=...+.....+.++|+|..+|+..++..|+|-+ .+.++-..+.. .. +..+.-
T Consensus 244 ~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~--dmdlySN~LYv---~~--~~skLs 316 (559)
T KOG1155|consen 244 EEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLD--DMDLYSNVLYV---KN--DKSKLS 316 (559)
T ss_pred HHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcch--hHHHHhHHHHH---Hh--hhHHHH
Confidence 4566778888865 8999888888888888999999999999999999998643 22233322222 11 112333
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC
Q 000176 1737 KVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1814 (1924)
Q Consensus 1737 ~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~ 1814 (1924)
-+.+.+++.+... +.-.-.+++|...+++++|...|+++++.+|....+|..+++=++.. +...|.+.|.||++.+|.
T Consensus 317 ~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~ 396 (559)
T KOG1155|consen 317 YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR 396 (559)
T ss_pred HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch
Confidence 3344444444332 55556778888889999999999999999999999999999999999 999999999999999988
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000176 1815 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1894 (1924)
Q Consensus 1815 ~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~ 1894 (1924)
+ ..+|+.+||.|.-++.+.=|.-.|++|+..-|.+..+|..+++.|.+.++++.|...|.||+. ...-.. ..+.+
T Consensus 397 D--yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~--~~dte~-~~l~~ 471 (559)
T KOG1155|consen 397 D--YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL--LGDTEG-SALVR 471 (559)
T ss_pred h--HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh--ccccch-HHHHH
Confidence 7 489999999999999999999999999999999999999999999999999999999999998 433222 45667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1895 YLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1895 yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
..++.++.++.++|...|++.++
T Consensus 472 LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 77888888888999888888877
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.9e-10 Score=142.16 Aligned_cols=267 Identities=12% Similarity=0.082 Sum_probs=203.8
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHH
Q 000176 1645 IRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLE 1724 (1924)
Q Consensus 1645 ~~~~e~~~~~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le 1724 (1924)
+...-.....++.+.+.+...+.....|+....++-.+....++|+.+.|...++++.+..|... +.+.+.+..+.
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~----l~~~~~~a~l~ 163 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN----ILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc----hHHHHHHHHHH
Confidence 33444445566777888888888777787777777777778888888888888888887665322 33556667777
Q ss_pred HHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHh-------------------------
Q 000176 1725 NEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKK------------------------- 1778 (1924)
Q Consensus 1725 ~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~------------------------- 1778 (1924)
...+ +.+.|.+.++++.+..|.. .++..++.+|.+.|++++|.+++.++.+.
T Consensus 164 l~~~--~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~ 241 (409)
T TIGR00540 164 LAQN--ELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMA 241 (409)
T ss_pred HHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7777 4588888888888887764 67777777777777777666655554422
Q ss_pred -------------cC----CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHH--HHHHHHHHHHHcCCHHHHH
Q 000176 1779 -------------FK----HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIK--FISQTAILEFKNGVADRGR 1838 (1924)
Q Consensus 1779 -------------~~----~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~--~~~~~A~le~~~g~~e~Ar 1838 (1924)
.| +++.+|+.++..+... ++++|.++++++++..|++.... .+..+.. ...++.+.++
T Consensus 242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~--l~~~~~~~~~ 319 (409)
T TIGR00540 242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPR--LKPEDNEKLE 319 (409)
T ss_pred hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhh--cCCCChHHHH
Confidence 22 3778889999988888 99999999999999999875322 2333332 3457889999
Q ss_pred HHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1839 SMFEGILSEYPKRT--DLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916 (1924)
Q Consensus 1839 ~lfe~aL~~~Pk~~--dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAl 1916 (1924)
..++++++..|++. .+...|+.++++.|++++|+..|+++......|+.. .+..+.....+.|+.+.+.+++++|+
T Consensus 320 ~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~--~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 320 KLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN--DLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999 889999999999999999999999533323666655 35588999999999999999999999
Q ss_pred HHHHh
Q 000176 1917 EYVES 1921 (1924)
Q Consensus 1917 e~v~~ 1921 (1924)
..+-+
T Consensus 398 ~~~~~ 402 (409)
T TIGR00540 398 GLMLA 402 (409)
T ss_pred HHHhc
Confidence 87754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-12 Score=122.50 Aligned_cols=71 Identities=35% Similarity=0.632 Sum_probs=66.8
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCC---CccCCCCcEEEEEEEEEeCCCCEEEEE
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEPLSKRVEVT 1435 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~---~~~f~~G~~V~~kVl~vd~e~~ri~LS 1435 (1924)
+++|++|.|+|++++++|+||+|+++++|+||++++||.++.+| .+.|++||.|+|+|+++|+++++|.||
T Consensus 1 ~k~G~~V~g~V~~i~~~G~fV~l~~~v~G~v~~~~ls~~~~~~~~~~~~~~~~G~~v~~kVl~id~~~~~i~LS 74 (74)
T cd05705 1 IKEGQLLRGYVSSVTKQGVFFRLSSSIVGRVLFQNVTKYFVSDPSLYNKYLPEGKLLTAKVLSVNSEKNLVELS 74 (74)
T ss_pred CCCCCEEEEEEEEEeCCcEEEEeCCCCEEEEEHHHccCccccChhhHhcccCCCCEEEEEEEEEECCCCEEecC
Confidence 57999999999999999999999999999999999999997764 589999999999999999999999886
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-10 Score=134.80 Aligned_cols=199 Identities=14% Similarity=0.071 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000176 1714 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1792 (1924)
Q Consensus 1714 l~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~ 1792 (1924)
...|..+.......+ +.++|.+.|+++++..|.. ..|..++.+|...|++++|.+.|++++...+....+|..++.+
T Consensus 31 ~~~~~~la~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQG--DLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 356777777778888 5599999999999988764 8999999999999999999999999999999999999999999
Q ss_pred HHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 000176 1793 LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1871 (1924)
Q Consensus 1793 l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~a 1871 (1924)
+... ++++|...|++++...+.......|..+|..++..|++++|...|++++...|.+...|..++.++...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 9999 999999999999986543344578999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1872 RGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1872 r~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
..+|++++. ..|... ..|.....+....|+.+.++.+.+.+..
T Consensus 189 ~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQ--TYNQTA-ESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHH--hCCCCH-HHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999998 455555 3455667788888999999888776654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-12 Score=121.90 Aligned_cols=71 Identities=48% Similarity=0.793 Sum_probs=65.4
Q ss_pred cccCCcEEEEEEeeeeceeEEEEecCCcceeeccCCCCCCCCCCccCCCcEEEEEEEEEcCCCcEEEEccCcc
Q 000176 229 TVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 301 (1924)
Q Consensus 229 ~l~~g~~l~~~V~svedhG~ild~Gi~~~~gFl~~~~~~~~~~~~l~~G~~~~~~v~~~~~~~~~v~ls~~~~ 301 (1924)
||.+|++++|+|+|||||||+||||+.+++||||+++++... .+++||.+.|.|++++.+++.+.||+.+.
T Consensus 1 dl~~G~~v~g~V~si~d~G~~v~~g~~gv~Gfl~~~~~~~~~--~~~~Gq~v~~~V~~vd~~~~~v~ls~k~~ 71 (74)
T cd05694 1 DLVEGMVLSGCVSSVEDHGYILDIGIPGTTGFLPKKDAGNFS--KLKVGQLLLCVVEKVKDDGRVVSLSADPS 71 (74)
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEeCCCCcEEEEEHHHCCccc--ccCCCCEEEEEEEEEECCCCEEEEEEeec
Confidence 688999999999999999999999999999999999986433 79999999999999999999999998653
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-10 Score=133.30 Aligned_cols=199 Identities=16% Similarity=0.117 Sum_probs=176.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HH
Q 000176 1673 NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KV 1751 (1924)
Q Consensus 1673 ~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i 1751 (1924)
.....|..++..+...+++++|...++++++..|.. ...|..+..++...+ +.+.|.+.|+++++..|.. ..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~ 101 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDD-----YLAYLALALYYQQLG--ELEKAEDSFRRALTLNPNNGDV 101 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHH
Confidence 347788999999999999999999999999876642 347777778888888 5599999999999988764 88
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1752 HLALLGLYERTEQNKLADELLYKMIKKF--KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1752 ~~~l~~i~~~~gk~e~A~~~fe~~lk~~--~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
|..++.+|...|++++|.+.|++++... +.....|..++..+... ++++|...|.+++...|.+ ...|..+|.++
T Consensus 102 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~ 179 (234)
T TIGR02521 102 LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR--PESLLELAELY 179 (234)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC--hHHHHHHHHHH
Confidence 9999999999999999999999999753 45678899999999999 9999999999999998876 57899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
+..|++++|...|++++...|.....|...+.++...|+.+.|+.+++.+..
T Consensus 180 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 180 YLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999999999999898888888899999999999999999888765
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.9e-12 Score=119.71 Aligned_cols=70 Identities=27% Similarity=0.464 Sum_probs=66.6
Q ss_pred CcEEEEEEEEeecceEEEEEecCceeEEeeccccCccc--ccCcccccCCCcEEEEEEEEEecCCCeeEEecc
Q 000176 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH--VDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528 (1924)
Q Consensus 1458 G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~--~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK 1528 (1924)
|+++.|+|+++.++|+||+|.+ +++|+||++++++.. .+++.+.|++||.|+|+|+++|++++||.||+|
T Consensus 1 G~~V~g~V~~i~~~g~~V~l~~-~i~G~i~~~~ls~~~~~~~~~~~~~~vG~~v~~kV~~id~~~~~i~Ls~k 72 (73)
T cd05703 1 GQEVTGFVNNVSKEFVWLTISP-DVKGRIPLLDLSDDVSVLEHPEKKFPIGQALKAKVVGVDKEHKLLRLSAR 72 (73)
T ss_pred CCEEEEEEEEEeCCEEEEEeCC-CcEEEEEHHHcCCccccccCHHHhCCCCCEEEEEEEEEeCCCCEEEEEec
Confidence 7999999999999999999987 899999999999864 788999999999999999999999999999986
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.3e-12 Score=118.53 Aligned_cols=71 Identities=23% Similarity=0.287 Sum_probs=66.2
Q ss_pred ccCCCCEEEEEEEEEecCeEEEEEC-CCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeecccc
Q 000176 758 HIHPNSVVHGYVCNIIETGCFVRFL-GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834 (1924)
Q Consensus 758 ~~~~G~~~~G~V~~i~~~G~fV~f~-~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~ 834 (1924)
|+++|++++|+|++|+++|+||+|. ++++||+|++++++. ..|++||.+.|+|+++|++++++.||+|++.
T Consensus 1 dl~~G~~v~g~V~si~d~G~~v~~g~~gv~Gfl~~~~~~~~------~~~~~Gq~v~~~V~~vd~~~~~v~ls~k~~~ 72 (74)
T cd05694 1 DLVEGMVLSGCVSSVEDHGYILDIGIPGTTGFLPKKDAGNF------SKLKVGQLLLCVVEKVKDDGRVVSLSADPSK 72 (74)
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEeCCCCcEEEEEHHHCCcc------cccCCCCEEEEEEEEEECCCCEEEEEEeecc
Confidence 4788999999999999999999995 699999999999875 6799999999999999999999999999764
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.1e-10 Score=134.98 Aligned_cols=252 Identities=15% Similarity=0.089 Sum_probs=203.4
Q ss_pred CCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000176 1656 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1735 (1924)
Q Consensus 1656 ~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a 1735 (1924)
+..++...||.++..+|...+----|...+.-..+-.+.--+++.+.....+|.|.-. -..|.+...+ +-|+|
T Consensus 277 DfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCC-----iIaNYYSlr~--eHEKA 349 (559)
T KOG1155|consen 277 DFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCC-----IIANYYSLRS--EHEKA 349 (559)
T ss_pred hHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCcccee-----eehhHHHHHH--hHHHH
Confidence 3889999999999999975444444444444444445555667777777777765332 2335555555 34899
Q ss_pred HHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCC
Q 000176 1736 VKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1813 (1924)
Q Consensus 1736 ~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p 1813 (1924)
...|+||++.+|.. .+|..++.-|....+...|.+.|.+|+...|.+...|+.+++.+.-. -+.-|.-.|++|++.-|
T Consensus 350 v~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP 429 (559)
T KOG1155|consen 350 VMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP 429 (559)
T ss_pred HHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC
Confidence 99999999999985 99999999999999999999999999999999999999999999888 88999999999999999
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCchhH
Q 000176 1814 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS-----LPPKKM 1888 (1924)
Q Consensus 1814 ~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~-----~~pk~~ 1888 (1924)
.+ ..+|..+|+.|.+.+++++|...|.+++........++..+++++.+.++.++|-..|++.+... ..++-.
T Consensus 430 nD--sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ 507 (559)
T KOG1155|consen 430 ND--SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETI 507 (559)
T ss_pred Cc--hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHH
Confidence 87 48999999999999999999999999999888888899999999999999999999999998721 233222
Q ss_pred H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1889 K-FLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1889 k-~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
+ .+| ...++.+++++++|.....+++.+
T Consensus 508 ka~~f--LA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 508 KARLF--LAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHH--HHHHHHhhcchHHHHHHHHHHhcC
Confidence 1 234 567899999999988776666543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.2e-10 Score=153.51 Aligned_cols=260 Identities=10% Similarity=0.023 Sum_probs=200.9
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------------------
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERAL------------------------------- 1702 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL------------------------------- 1702 (1924)
.++..++...|++++..+|++..+|+.|+..+...+..++|...+++++
T Consensus 129 ~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r 208 (765)
T PRK10049 129 AGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKER 208 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHH
Confidence 3557888999999999999999999999888877777666655555332
Q ss_pred ---------------HhcCCcchh--hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhC
Q 000176 1703 ---------------QTINIREEN--EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD--PKKVHLALLGLYERTE 1763 (1924)
Q Consensus 1703 ---------------~~i~~~ee~--ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~--~~~i~~~l~~i~~~~g 1763 (1924)
+..+...+. .....++.++......+ +.+.|+..|+++++..+ +......++.+|...+
T Consensus 209 ~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g--~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g 286 (765)
T PRK10049 209 YAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD--RYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLH 286 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh--hHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcC
Confidence 221111000 00111222122234556 45889999999998863 2333344688999999
Q ss_pred ChHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC-------------CChHHHHHHHH
Q 000176 1764 QNKLADELLYKMIKKFKHS----CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR-------------HKHIKFISQTA 1825 (1924)
Q Consensus 1764 k~e~A~~~fe~~lk~~~~~----~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~-------------~~~~~~~~~~A 1825 (1924)
++++|...|++++...+.. ...+..++..++++ ++++|.++|++++...|. .....++..+|
T Consensus 287 ~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a 366 (765)
T PRK10049 287 QPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLS 366 (765)
T ss_pred CcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHH
Confidence 9999999999998766543 45667777777788 999999999999998763 22346788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCH
Q 000176 1826 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEE 1905 (1924)
Q Consensus 1826 ~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~ 1905 (1924)
.++...|++++|..+|++++...|.+..+|..++.++...|++++|..+|++++. +.|+.. .++...+......|++
T Consensus 367 ~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~-~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 367 QVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNI-NLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCh-HHHHHHHHHHHHhCCH
Confidence 9999999999999999999999999999999999999999999999999999999 778887 4777777788889999
Q ss_pred HHHHHHHHHHHHH
Q 000176 1906 ERIEYVKQKAMEY 1918 (1924)
Q Consensus 1906 ~~~~~v~~rAle~ 1918 (1924)
+.++.+++++++.
T Consensus 444 ~~A~~~~~~ll~~ 456 (765)
T PRK10049 444 RQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-11 Score=147.54 Aligned_cols=139 Identities=24% Similarity=0.302 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHh-CChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000176 1716 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERT-EQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1793 (1924)
Q Consensus 1716 lWiayl~le~~~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~-gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l 1793 (1924)
+|++||++..+.+ ..+.||.+|++|++..+. ..+|.++|.++.+. ++.+.|..+|+++++.|+.+..+|+.|++|+
T Consensus 3 v~i~~m~~~~r~~--g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTE--GIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--ChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 7999999999998 679999999999976554 49999999998885 4555599999999999999999999999999
Q ss_pred Hhc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000176 1794 LKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1856 (1924)
Q Consensus 1794 ~~~-~~~~A~~l~~ral~~~p~~~-~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~ 1856 (1924)
+.. +.+.||.+|+|++..++... .-.+|..|.+||.++|+.+..+.+++++...+|....++.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 999 99999999999999998876 5679999999999999999999999999999998655544
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.5e-10 Score=148.80 Aligned_cols=238 Identities=12% Similarity=-0.038 Sum_probs=179.0
Q ss_pred hCCCCHHHHHHHHHHH--HH---cCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHH-HcCC----CCHHHHHHHH
Q 000176 1670 SSPNSSFVWIKYMAFM--LS---MADVEKARSIAERALQTINIREENEKLNIWVAYFNLEN-EYGN----PPEEAVVKVF 1739 (1924)
Q Consensus 1670 ~~P~s~~~W~~y~~~~--~~---~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~-~~g~----~~~e~a~~vf 1739 (1924)
..|.+.+.|..|+.-. +. ...+++|...|++|++..|... ....+++++.+.. ..+. .+.++|...+
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a---~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~ 327 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSI---APYCALAECYLSMAQMGIFDKQNAMIKAKEHA 327 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccH---HHHHHHHHHHHHHHHcCCcccchHHHHHHHHH
Confidence 3456666666665542 21 2357899999999998877432 1222333222211 1111 0258899999
Q ss_pred HHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh
Q 000176 1740 QRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH 1817 (1924)
Q Consensus 1740 erAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~ 1817 (1924)
++|++..|.. ..|..++.++...|++++|...|+++++..|.++.+|+.++..+... ++++|...|++++...|.+.
T Consensus 328 ~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~- 406 (553)
T PRK12370 328 IKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA- 406 (553)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh-
Confidence 9999999875 89999999999999999999999999999999999999999999999 99999999999999999874
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000176 1818 IKFISQTAILEFKNGVADRGRSMFEGILSEY-PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1896 (1924)
Q Consensus 1818 ~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~-Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl 1896 (1924)
..+..++..++..|++++|...|++++... |.....|..++.++...|++++|+..|+++.. .+|... ..+....
T Consensus 407 -~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~~-~~~~~l~ 482 (553)
T PRK12370 407 -AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITGL-IAVNLLY 482 (553)
T ss_pred -hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchhH-HHHHHHH
Confidence 444455666777899999999999999875 77888899999999999999999999999877 455433 2343333
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 000176 1897 EYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1897 ~~E~~~G~~~~~~~v~~rAle 1917 (1924)
......| +.+...+++.++
T Consensus 483 ~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 483 AEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHhccH--HHHHHHHHHHHH
Confidence 3334444 355555555443
|
|
| >PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-12 Score=153.26 Aligned_cols=133 Identities=15% Similarity=0.148 Sum_probs=116.2
Q ss_pred CCCEEEEEEEEEecCcCeEEEEeC--CceEEEEecccccccccCCCCCCCCCCCEEEEEEEEEecccCCceEEEEeeecc
Q 000176 1259 EGDIVGGRISKILSGVGGLVVQIG--PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1336 (1924)
Q Consensus 1259 ~G~~v~g~V~~v~~~~~g~~V~l~--~~~~G~v~~selsd~~~~~p~~~~~~G~~v~~~Vl~vd~~~~~~~~i~LSlr~~ 1336 (1924)
+|++|.|+|++|.++ |+||+|. +++.|+||++|+++.|..+|.+.+++|+.+.|+||.+|++ +++|.||+|..
T Consensus 17 ~GdvV~g~V~~I~d~--GafV~L~EY~gvEGlIhiSElS~~ri~~i~d~vkvGd~v~vkVl~VD~e---kg~IdLS~K~v 91 (319)
T PTZ00248 17 EDDLVMVKVVRITEM--GAYVSLLEYDDIEGMILMSELSKRRIRSINKLIRVGRHEVVVVLRVDKE---KGYIDLSKKRV 91 (319)
T ss_pred CCCEEEEEEEEEeCC--eEEEEecCCCCcEEEEEHHHhcccccCCHHHhcCCCCEEEEEEEEEeCC---CCEEEEEeeec
Confidence 799999999999999 9999996 5899999999999999999999999999999999999987 68999999998
Q ss_pred ccCCCCCCCCCCCCCCCCCcchhhhhccCCCCCEEEEEEEEEee-ceEEEE------eCCCcEEEEECccCCCcccCCCC
Q 000176 1337 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS-KGCFIM------LSRKLDAKVLLSNLSDGYVESPE 1409 (1924)
Q Consensus 1337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~G~~v~G~V~~v~~-~G~fV~------l~~~v~g~v~~selsd~~~~~~~ 1409 (1924)
. .+| +......++.|+++.|.|.++.+ +|+|++ .-+..+++.|+.+.+...+.+|.
T Consensus 92 ~-----~~p------------w~~~~e~~~~g~~v~~~V~~ia~~~g~~~eely~~i~~pl~~~~gh~y~af~~~v~~~~ 154 (319)
T PTZ00248 92 S-----PED------------IEACEEKFSKSKKVHSIMRHIAQKHGMSVEELYTKIIWPLYKKYGHALDALKEALTNPD 154 (319)
T ss_pred c-----cch------------HHHHHHhCcCCCEEEEEEEEchhhcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCch
Confidence 7 333 45556689999999999999955 999997 55678899999888877677776
Q ss_pred ccCC
Q 000176 1410 KEFP 1413 (1924)
Q Consensus 1410 ~~f~ 1413 (1924)
..|.
T Consensus 155 evl~ 158 (319)
T PTZ00248 155 NVFE 158 (319)
T ss_pred hhhc
Confidence 5554
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.5e-10 Score=151.49 Aligned_cols=250 Identities=12% Similarity=0.025 Sum_probs=133.2
Q ss_pred CCchHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000176 1657 APRTPDEFERLVRSSP-NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1735 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P-~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a 1735 (1924)
..++...|+++..... -+...|..++..+.+.|++++|..+|+++... ....+ ...|..+++.+.+.| ..+.|
T Consensus 488 vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~-Gv~PD---~vTYnsLI~a~~k~G--~~deA 561 (1060)
T PLN03218 488 VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK-NVKPD---RVVFNALISACGQSG--AVDRA 561 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHHHHCC--CHHHH
Confidence 4445555555554321 24556666666666666666666666665532 11111 234555555555555 34666
Q ss_pred HHHHHHHHhc----CCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHH
Q 000176 1736 VKVFQRALQY----CDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1809 (1924)
Q Consensus 1736 ~~vferAl~~----~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~-~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral 1809 (1924)
.++|+++... .|+...|..++..|.+.|++++|.++|+.|.+.. +.+...|..++..+.+. ++++|..+|.++.
T Consensus 562 ~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~ 641 (1060)
T PLN03218 562 FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641 (1060)
T ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6666665431 2344556666666666666666666666665543 34555566666655555 6666666666655
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1810 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY-PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1810 ~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~-Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
+..-. ....+|..+...+.+.|++++|..+|+.+.+.. +-+...|+.++..+.+.|+++.|..+|+.+....+.|+.
T Consensus 642 ~~Gv~-PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdv- 719 (1060)
T PLN03218 642 KKGVK-PDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV- 719 (1060)
T ss_pred HcCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-
Confidence 44211 112455555555555555666666655555432 223445555555555555555555555555543344432
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000176 1889 KFLFKKYLEYEKSVGEEERIEYVKQKA 1915 (1924)
Q Consensus 1889 k~lw~~yl~~E~~~G~~~~~~~v~~rA 1915 (1924)
..|+..+....+.|+.++|..+|+++
T Consensus 720 -vtyN~LI~gy~k~G~~eeAlelf~eM 745 (1060)
T PLN03218 720 -STMNALITALCEGNQLPKALEVLSEM 745 (1060)
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 24555555555555555555555544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.8e-10 Score=153.89 Aligned_cols=253 Identities=10% Similarity=0.002 Sum_probs=177.7
Q ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCC---
Q 000176 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP--- 1731 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~--- 1731 (1924)
++.+++...+++++..+|++.. |..++..+...++.++|...++++++..|... .+|..|..+....+.+.
T Consensus 97 g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~-----~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 97 GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQ-----QYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCCChHHHH
Confidence 4477777788888888888888 88888888888888888888888887766432 35555555544433210
Q ss_pred -----------------------------------------HHHHHHHHHHHHhcC---CCH-----HHHHHHHHHHHHh
Q 000176 1732 -----------------------------------------EEAVVKVFQRALQYC---DPK-----KVHLALLGLYERT 1762 (1924)
Q Consensus 1732 -----------------------------------------~e~a~~vferAl~~~---~~~-----~i~~~l~~i~~~~ 1762 (1924)
.+.|.+.|+++++.. |.. ..++..+..+...
T Consensus 171 ~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 171 GAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 022334444444331 111 1222212233455
Q ss_pred CChHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC--hHHHHHHHHHHHHHcCCHHH
Q 000176 1763 EQNKLADELLYKMIKKF---KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK--HIKFISQTAILEFKNGVADR 1836 (1924)
Q Consensus 1763 gk~e~A~~~fe~~lk~~---~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~--~~~~~~~~A~le~~~g~~e~ 1836 (1924)
+++++|...|+++++.. |.....| ++..++.. ++++|..+|+++++..|... ....+..++..+.+.|++++
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 78888888888888764 3334455 47777777 88999999988887766541 23566677777788899999
Q ss_pred HHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000176 1837 GRSMFEGILSEYPK---------------RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1901 (1924)
Q Consensus 1837 Ar~lfe~aL~~~Pk---------------~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~ 1901 (1924)
|..+|++++...|. ...++..++.++...|+.++|+.+|++++. ..|.+. .+|...+.....
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~-~l~~~lA~l~~~ 405 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQ-GLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHh
Confidence 99999998887763 234667788888889999999999999988 677776 689999999999
Q ss_pred cCCHHHHHHHHHHHHHH
Q 000176 1902 VGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1902 ~G~~~~~~~v~~rAle~ 1918 (1924)
.|+.+.|..++++|++.
T Consensus 406 ~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 406 RGWPRAAENELKKAEVL 422 (765)
T ss_pred cCCHHHHHHHHHHHHhh
Confidence 99999999999998874
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-09 Score=136.55 Aligned_cols=224 Identities=13% Similarity=0.125 Sum_probs=173.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHH
Q 000176 1682 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYE 1760 (1924)
Q Consensus 1682 ~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~ 1760 (1924)
+....+.|+++.|...+++|.+..|... +...+....+....+ +.+.|.+.++++.+..|.. .++..++.+|.
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~----~~~~l~~a~l~l~~g--~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~ 198 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAELADNDQ----LPVEITRVRIQLARN--ENHAARHGVDKLLEVAPRHPEVLRLAEQAYI 198 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCcch----HHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4444777888888888888876554311 122223345666667 4477888888888777764 67777777777
Q ss_pred HhCChHHHHHHHHHHHH------------------------------------------hcCCCHHHHHHHHHHHHhc-C
Q 000176 1761 RTEQNKLADELLYKMIK------------------------------------------KFKHSCKVWLRRVQRLLKQ-Q 1797 (1924)
Q Consensus 1761 ~~gk~e~A~~~fe~~lk------------------------------------------~~~~~~~vw~~~a~~l~~~-~ 1797 (1924)
+.|++++|.+++.++.+ ..++++.++..|+..+... +
T Consensus 199 ~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~ 278 (398)
T PRK10747 199 RTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDD 278 (398)
T ss_pred HHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCC
Confidence 77777777755555442 3345788889999999999 9
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000176 1798 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1877 (1924)
Q Consensus 1798 ~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lfer 1877 (1924)
.++|..+++++++..+ + ..+...|+++. .++++++...+++.++.+|++.+++..++.+..+.+++++|+..|++
T Consensus 279 ~~~A~~~L~~~l~~~~-~--~~l~~l~~~l~--~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~ 353 (398)
T PRK10747 279 HDTAQQIILDGLKRQY-D--ERLVLLIPRLK--TNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRA 353 (398)
T ss_pred HHHHHHHHHHHHhcCC-C--HHHHHHHhhcc--CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999998543 3 36677777653 48999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000176 1878 AISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1878 al~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~ 1920 (1924)
++. ..|+.. .+..+...+...|+.+.+..+|.+++..+.
T Consensus 354 al~--~~P~~~--~~~~La~~~~~~g~~~~A~~~~~~~l~~~~ 392 (398)
T PRK10747 354 ALK--QRPDAY--DYAWLADALDRLHKPEEAAAMRRDGLMLTL 392 (398)
T ss_pred HHh--cCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 999 666655 466788889999999999999999998764
|
|
| >cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.1e-12 Score=116.76 Aligned_cols=70 Identities=30% Similarity=0.565 Sum_probs=67.2
Q ss_pred CCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcc--cCCCCccCCCCcEEEEEEEEEeCCCCEEEEEee
Q 000176 1368 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY--VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1437 (1924)
Q Consensus 1368 G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~--~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk 1437 (1924)
|++|.|+|+++.++|+||+|+++++|++|+++++|.. .++|.+.|++||.|+|+|+++|+++++|.||+|
T Consensus 1 G~~V~g~V~~i~~~g~~V~l~~~i~G~i~~~~ls~~~~~~~~~~~~~~vG~~v~~kV~~id~~~~~i~Ls~k 72 (73)
T cd05703 1 GQEVTGFVNNVSKEFVWLTISPDVKGRIPLLDLSDDVSVLEHPEKKFPIGQALKAKVVGVDKEHKLLRLSAR 72 (73)
T ss_pred CCEEEEEEEEEeCCEEEEEeCCCcEEEEEHHHcCCccccccCHHHhCCCCCEEEEEEEEEeCCCCEEEEEec
Confidence 7899999999999999999999999999999999864 789999999999999999999999999999986
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-09 Score=137.82 Aligned_cols=258 Identities=16% Similarity=0.171 Sum_probs=184.9
Q ss_pred HhcCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCC
Q 000176 1652 LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1731 (1924)
Q Consensus 1652 ~~~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~ 1731 (1924)
...++..+|...+...+..+|.++.+|..++..+.++|+++++...+--|--..|..- .+|..+..+-.++|++
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~-----e~W~~ladls~~~~~i- 223 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY-----ELWKRLADLSEQLGNI- 223 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh-----HHHHHHHHHHHhcccH-
Confidence 3457789999999999999999999999999999999999999988877775555422 4899999999999954
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHhc-CHHHHHHH
Q 000176 1732 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSC-----KVWLRRVQRLLKQ-QQEGVQAV 1804 (1924)
Q Consensus 1732 ~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~-----~vw~~~a~~l~~~-~~~~A~~l 1804 (1924)
+.|+-.|.||++.+|.. +.....+.+|.++|++..|.+.|.+++...|+.. ..-..+++++... +-+.|.+.
T Consensus 224 -~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 -NQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred -HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999986 8999999999999999999999999998776322 2223556666666 55888888
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHH--------------------------------------------
Q 000176 1805 VQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM-------------------------------------------- 1840 (1924)
Q Consensus 1805 ~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~l-------------------------------------------- 1840 (1924)
++.++..........-+.-+|.++.+...++.|...
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 888887433322222333333333333322222111
Q ss_pred -------------HHHHHHh----C--C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 000176 1841 -------------FEGILSE----Y--P-KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1900 (1924)
Q Consensus 1841 -------------fe~aL~~----~--P-k~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~ 1900 (1924)
.+-++.. . | ...+++...++.+...|.+..|..+|-.++. .++.+..++|.+....+.
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~--~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN--REGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc--CccccchhhhHHHHHHHH
Confidence 1111111 1 1 2345666777777777777778887777776 444333467777777777
Q ss_pred HcCCHHHHHHHHHHHHHH
Q 000176 1901 SVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1901 ~~G~~~~~~~v~~rAle~ 1918 (1924)
..|.++.|...|++++..
T Consensus 461 ~l~e~e~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLIL 478 (895)
T ss_pred HHhhHHHHHHHHHHHHhc
Confidence 777777777777777653
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.8e-10 Score=133.42 Aligned_cols=232 Identities=13% Similarity=0.079 Sum_probs=195.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHH
Q 000176 1678 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALL 1756 (1924)
Q Consensus 1678 W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~ 1756 (1924)
...-+-|++-.|+.-.|...++.+++..|-.. +++|.+..++.... +.++....|..|...+|.+ .+|+..+
T Consensus 329 l~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-----~lyI~~a~~y~d~~--~~~~~~~~F~~A~~ldp~n~dvYyHRg 401 (606)
T KOG0547|consen 329 LLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-----SLYIKRAAAYADEN--QSEKMWKDFNKAEDLDPENPDVYYHRG 401 (606)
T ss_pred HHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-----hHHHHHHHHHhhhh--ccHHHHHHHHHHHhcCCCCCchhHhHH
Confidence 33445567778999999999999998666322 34555555555555 3488999999999999986 9999999
Q ss_pred HHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHH
Q 000176 1757 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1835 (1924)
Q Consensus 1757 ~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e 1835 (1924)
.++.-.+++++|..-|++++...|.+.-.+..++-.++++ +++++...|+.+.+.+|.. ++++..||+.+..+++++
T Consensus 402 Qm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~--~Evy~~fAeiLtDqqqFd 479 (606)
T KOG0547|consen 402 QMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC--PEVYNLFAEILTDQQQFD 479 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--chHHHHHHHHHhhHHhHH
Confidence 9999999999999999999999999999999999999999 9999999999999999998 599999999999999999
Q ss_pred HHHHHHHHHHHhCCC------CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000176 1836 RGRSMFEGILSEYPK------RTDLWSIYLDQEIR-LGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1908 (1924)
Q Consensus 1836 ~Ar~lfe~aL~~~Pk------~~dlw~~y~~le~k-~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~ 1908 (1924)
.|...|..++...|. +...+..-+-+..+ .+++.+|..|+++|+. +.|+-- ..+.-...||.+.|++++|
T Consensus 480 ~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e--~Dpkce-~A~~tlaq~~lQ~~~i~eA 556 (606)
T KOG0547|consen 480 KAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE--LDPKCE-QAYETLAQFELQRGKIDEA 556 (606)
T ss_pred HHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc--cCchHH-HHHHHHHHHHHHHhhHHHH
Confidence 999999999999998 43322222222222 3899999999999999 777655 6788999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 000176 1909 EYVKQKAMEYVES 1921 (1924)
Q Consensus 1909 ~~v~~rAle~v~~ 1921 (1924)
..+|++++.+.++
T Consensus 557 ielFEksa~lArt 569 (606)
T KOG0547|consen 557 IELFEKSAQLART 569 (606)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998876
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.4e-10 Score=132.53 Aligned_cols=257 Identities=18% Similarity=0.282 Sum_probs=185.7
Q ss_pred CchHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCC------
Q 000176 1658 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA-DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP------ 1730 (1924)
Q Consensus 1658 p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~-e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~------ 1730 (1924)
-+-...|..+|..+|+++++|+.-|.+++.-+ .++.||+++.|+|+..|..+ .+|..|+.+|+.+-+-
T Consensus 122 ~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp-----~Lw~eyfrmEL~~~~Kl~~rr~ 196 (568)
T KOG2396|consen 122 GEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSP-----KLWKEYFRMELMYAEKLRNRRE 196 (568)
T ss_pred hHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCCh-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 34556899999999999999999999987765 49999999999998777443 4899999998876420
Q ss_pred ----C---------------------------------------------------------------------------
Q 000176 1731 ----P--------------------------------------------------------------------------- 1731 (1924)
Q Consensus 1731 ----~--------------------------------------------------------------------------- 1731 (1924)
+
T Consensus 197 ~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~~~~~np~~~~~laqr~l~i 276 (568)
T KOG2396|consen 197 ELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQSKAPDNPLLWDDLAQRELEI 276 (568)
T ss_pred HhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHH
Confidence 0
Q ss_pred ---------------------HHHHHHHHHHHHhcCCCHHHHHHHHHHH-------------------------------
Q 000176 1732 ---------------------EEAVVKVFQRALQYCDPKKVHLALLGLY------------------------------- 1759 (1924)
Q Consensus 1732 ---------------------~e~a~~vferAl~~~~~~~i~~~l~~i~------------------------------- 1759 (1924)
.+...++|+.|+++-+...+|..|+.++
T Consensus 277 ~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~ 356 (568)
T KOG2396|consen 277 LSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSEC 356 (568)
T ss_pred HHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccc
Confidence 3344556666666666666666665532
Q ss_pred ---------HHhCChHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCCCh----------
Q 000176 1760 ---------ERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPRHKH---------- 1817 (1924)
Q Consensus 1760 ---------~~~gk~e~A~~~fe~~l-k~~~~~~~vw~~~a~~l~~~--~~~~A~~l~~ral~~~p~~~~---------- 1817 (1924)
........|++.-.+++ ..|.++.++|..+.+.+... +++--...+-..++..+...+
T Consensus 357 ~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~ 436 (568)
T KOG2396|consen 357 LYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEG 436 (568)
T ss_pred hHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhc
Confidence 11122344555555555 45678899999888877743 222211111122222222222
Q ss_pred -----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHH
Q 000176 1818 -----------------------IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL--GDVDLIR 1872 (1924)
Q Consensus 1818 -----------------------~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~--gd~~~ar 1872 (1924)
..+-..|-.++++.|-+..||..|.++...-|-..+++..++++|..+ -+...+|
T Consensus 437 dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r 516 (568)
T KOG2396|consen 437 DSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIR 516 (568)
T ss_pred cchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHH
Confidence 344555566677888899999999999999999999999999999754 3588999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 000176 1873 GLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1922 (1924)
Q Consensus 1873 ~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~~ 1922 (1924)
.+|++|+. ..-.+. .+|..|+.+|..+|..+.+-.+|+||+..++-.
T Consensus 517 ~~yd~a~~--~fg~d~-~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 517 EYYDRALR--EFGADS-DLWMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHHHHHHH--HhCCCh-HHHHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 99999998 333555 799999999999999999999999999988753
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-09 Score=130.79 Aligned_cols=265 Identities=18% Similarity=0.238 Sum_probs=203.1
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHH
Q 000176 1645 IRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLE 1724 (1924)
Q Consensus 1645 ~~~~e~~~~~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le 1724 (1924)
|...-.+.......+.++.||+++...|.++.+|..|+..++...+++....+|.|||...-. +.+|.-|+..-
T Consensus 23 w~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn------lDLW~lYl~YV 96 (656)
T KOG1914|consen 23 WSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN------LDLWKLYLSYV 96 (656)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh------HhHHHHHHHHH
Confidence 655555554455889999999999999999999999999999999999999999999976542 67999999885
Q ss_pred HHcCC-CC--HHHHHHHHHHHHhcCC----CHHHHHHHHHHH---------HHhCChHHHHHHHHHHHHhc-CCCHHHHH
Q 000176 1725 NEYGN-PP--EEAVVKVFQRALQYCD----PKKVHLALLGLY---------ERTEQNKLADELLYKMIKKF-KHSCKVWL 1787 (1924)
Q Consensus 1725 ~~~g~-~~--~e~a~~vferAl~~~~----~~~i~~~l~~i~---------~~~gk~e~A~~~fe~~lk~~-~~~~~vw~ 1787 (1924)
.+... .+ .+...+.|+-|+..+. ...+|..|++++ +...+++..+.+|++|+... ..-.++|.
T Consensus 97 R~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~ 176 (656)
T KOG1914|consen 97 RETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWK 176 (656)
T ss_pred HHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHH
Confidence 55432 11 2445566777777664 248999999965 45568889999999999765 44578999
Q ss_pred HHHHHHHhc--------------CHHHHHHHHHHHHHhC----------CC------CChHHHHHHHHHHHHHcCC----
Q 000176 1788 RRVQRLLKQ--------------QQEGVQAVVQRALLSL----------PR------HKHIKFISQTAILEFKNGV---- 1833 (1924)
Q Consensus 1788 ~~a~~l~~~--------------~~~~A~~l~~ral~~~----------p~------~~~~~~~~~~A~le~~~g~---- 1833 (1924)
.|..|...- .+..||++++.....- |. ...+++|.+|..+|..++-
T Consensus 177 DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~ 256 (656)
T KOG1914|consen 177 DYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLD 256 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccccc
Confidence 999998743 4666787777654321 11 1236789999999986653
Q ss_pred ----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 000176 1834 ----ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD--------------VDLIRGLFERAISLSLPPKKMKFLFKKY 1895 (1924)
Q Consensus 1834 ----~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd--------------~~~ar~lferal~~~~~pk~~k~lw~~y 1895 (1924)
-.|..-.|+++|...+-..++|..|..+....++ .++++.+|||++. ...+..+.++..|
T Consensus 257 ~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~--~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 257 GTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIE--GLLKENKLLYFAL 334 (656)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 2356667999999999999999999998887766 7889999999998 3333445789999
Q ss_pred HHHHHHcCC---HHHHHHHHHHHHH
Q 000176 1896 LEYEKSVGE---EERIEYVKQKAME 1917 (1924)
Q Consensus 1896 l~~E~~~G~---~~~~~~v~~rAle 1917 (1924)
.++|+..-+ .+.+...+++++.
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~ 359 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLK 359 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHh
Confidence 999887755 6666667766654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-09 Score=119.83 Aligned_cols=196 Identities=15% Similarity=0.095 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHH
Q 000176 1675 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHL 1753 (1924)
Q Consensus 1675 ~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~ 1753 (1924)
....+.++--|++.|+...|+.-+++||+..|... ..|..+...+...| ..+.|.+.|++|++..|.. ++..
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~-----~a~~~~A~~Yq~~G--e~~~A~e~YrkAlsl~p~~GdVLN 107 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY-----LAHLVRAHYYQKLG--ENDLADESYRKALSLAPNNGDVLN 107 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH-----HHHHHHHHHHHHcC--ChhhHHHHHHHHHhcCCCccchhh
Confidence 34567777888899999999999999998877533 47888888888889 4599999999999999886 9999
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 000176 1754 ALLGLYERTEQNKLADELLYKMIKK--FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1830 (1924)
Q Consensus 1754 ~l~~i~~~~gk~e~A~~~fe~~lk~--~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~ 1830 (1924)
.|+.++...|++++|...|++++.. |+.....|.+.+-+.++. +++.|+..|+|+|..+|... ......|+.++.
T Consensus 108 NYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~--~~~l~~a~~~~~ 185 (250)
T COG3063 108 NYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP--PALLELARLHYK 185 (250)
T ss_pred hhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC--hHHHHHHHHHHh
Confidence 9999999999999999999999984 578899999999999999 99999999999999999885 789999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1831 NGVADRGRSMFEGILSEYPKRTD-LWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1831 ~g~~e~Ar~lfe~aL~~~Pk~~d-lw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
.|++-.||..|++.....+-..+ +|. -+.++-..||.+.+-..=.+.-.
T Consensus 186 ~~~y~~Ar~~~~~~~~~~~~~A~sL~L-~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 186 AGDYAPARLYLERYQQRGGAQAESLLL-GIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred cccchHHHHHHHHHHhcccccHHHHHH-HHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999888775555 565 47888889998877665444443
|
|
| >cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-11 Score=119.12 Aligned_cols=79 Identities=47% Similarity=0.685 Sum_probs=75.6
Q ss_pred CCCCcCccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEee
Q 000176 752 LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830 (1924)
Q Consensus 752 ~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSl 830 (1924)
++..++++++|+++.|.|++++++|+||++.+++.||+|.+++++.+..++.+.|++||+|+|+|+++|.+++++.|||
T Consensus 5 l~~~~~~~~~G~i~~g~V~~v~~~G~fv~l~~~~~g~v~~~el~~~~~~~~~~~~~~Gd~v~vkV~~id~~~~~i~lsl 83 (83)
T cd04461 5 LPTNFSDLKPGMVVHGYVRNITPYGVFVEFLGGLTGLAPKSYISDEFVTDPSFGFKKGQSVTAKVTSVDEEKQRFLLSL 83 (83)
T ss_pred chhhHHhCCCCCEEEEEEEEEeeceEEEEcCCCCEEEEEHHHCCcccccCHHHhcCCCCEEEEEEEEEcCCCCEEEEeC
Confidence 5677888999999999999999999999999999999999999999999999999999999999999999999999996
|
Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >cd05704 S1_Rrp5_repeat_hs13 S1_Rrp5_repeat_hs13: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-11 Score=115.08 Aligned_cols=71 Identities=23% Similarity=0.399 Sum_probs=66.3
Q ss_pred cCCCcEEEEEEEEeec-ceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecc
Q 000176 1455 LHVGDIVIGQIKRVES-YGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~-~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK 1528 (1924)
+++|++|.|+|+++.+ ||+||+|.+ +.+|++|+|+++|+++.++.+.|++||.|+|+|+++|. +||.||+|
T Consensus 1 l~~G~iv~G~V~~i~~~~g~~v~l~~-~~~Glvhis~~s~~~~~~~~~~~~~Gd~v~~kV~~~~~--~~i~LSl~ 72 (72)
T cd05704 1 LEEGAVTLGMVTKVIPHSGLTVQLPF-GKTGLVSIFHLSDSYTENPLEGFKPGKIVRCCILSKKD--GKYQLSLR 72 (72)
T ss_pred CCCCCEEEEEEEEeeCCcEEEEECCC-CCEEEEEHHHhcCcccCCHHHhCCCCCEEEEEEEEecC--CEEEEEeC
Confidence 4789999999999986 899999976 89999999999999999999999999999999999984 99999986
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 13 (hs13). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >cd05686 S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=99.25 E-value=2e-11 Score=114.48 Aligned_cols=71 Identities=30% Similarity=0.497 Sum_probs=65.6
Q ss_pred CCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEec
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lsl 1527 (1924)
.+|++++|+|+++.+||+||+|.+.+.+||||+|++++.++.++.+.|++||.|+++|+++|.++ ||+||+
T Consensus 2 ~~g~~~~g~V~~i~~fG~fv~l~~~~~eGlvh~sel~~~~~~~~~~~~~~Gd~v~vkv~~vd~~~-ki~ls~ 72 (73)
T cd05686 2 ALYQIFKGEVASVTEYGAFVKIPGCRKQGLVHKSHMSSCRVDDPSEVVDVGEKVWVKVIGREMKD-KMKLSL 72 (73)
T ss_pred cCCCEEEEEEEEEEeeeEEEEECCCCeEEEEEchhhCCCcccCHhhEECCCCEEEEEEEEECCCC-cEEEEe
Confidence 58999999999999999999995434799999999999999999999999999999999999876 999986
|
pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was identified through a yeast two-hybrid interaction screen of a human kidney cDNA library using the pinin (pnn) protein as bait. pNO40 is thought to play a role in ribosome maturation and/or biogenesis. |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.3e-09 Score=145.78 Aligned_cols=253 Identities=9% Similarity=0.027 Sum_probs=205.7
Q ss_pred CCCCchHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1655 KDAPRTPDEFERLVRSS-PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~-P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
++..++...|+++.... +.+...|..++..+.+.|+++.|+.+|+++.+.-.. .+ ...|-.++..+.+.| ..+
T Consensus 451 g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~-Pd---vvTynaLI~gy~k~G--~~e 524 (1060)
T PLN03218 451 QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE-AN---VHTFGALIDGCARAG--QVA 524 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHHHHCc--CHH
Confidence 34667777888877644 346888999999999999999999999998864211 11 457889999989999 569
Q ss_pred HHHHHHHHHHhc--CCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHhc-CHHHHHHHHHH
Q 000176 1734 AVVKVFQRALQY--CDPKKVHLALLGLYERTEQNKLADELLYKMIKK---FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQR 1807 (1924)
Q Consensus 1734 ~a~~vferAl~~--~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~---~~~~~~vw~~~a~~l~~~-~~~~A~~l~~r 1807 (1924)
+|.++|+++.+. .|+...|..++..|.+.|++++|.++|+.|... ...+...|..++..+.+. ++++|.++|++
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999998764 466788999999999999999999999999763 245677888888888888 99999999999
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 000176 1808 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE--YPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPP 1885 (1924)
Q Consensus 1808 al~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~--~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~p 1885 (1924)
+.+..... ...+|..+...+.+.|++++|..+|+..... .|+ ...|..+++.+.+.|+++.|..+|+.+......|
T Consensus 605 M~e~gi~p-~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 605 IHEYNIKG-TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 98875332 3578899999999999999999999998876 344 5688999999999999999999999999866666
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1886 KKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1886 k~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
... .|...+....+.|+.+.|..+|++..+
T Consensus 683 d~~--tynsLI~ay~k~G~~eeA~~lf~eM~~ 712 (1060)
T PLN03218 683 GTV--SYSSLMGACSNAKNWKKALELYEDIKS 712 (1060)
T ss_pred CHH--HHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 544 799999999999999999999987643
|
|
| >PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.1e-11 Score=113.06 Aligned_cols=74 Identities=43% Similarity=0.817 Sum_probs=70.4
Q ss_pred ccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecc
Q 000176 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK 1528 (1924)
.+++|+++.|+|+++.++|+||+|. .+++|+||++++++.+..++...|++||.|+|+|+++|+++++|.||+|
T Consensus 1 k~~~G~iv~g~V~~v~~~g~~V~l~-~~~~g~ip~~~l~~~~~~~~~~~~~~G~~v~v~v~~vd~~~~~i~lS~k 74 (74)
T PF00575_consen 1 KLKEGDIVEGKVTSVEDFGVFVDLG-NGIEGFIPISELSDDRIDDPSEVYKIGQTVRVKVIKVDKEKGRIRLSLK 74 (74)
T ss_dssp -SSTTSEEEEEEEEEETTEEEEEES-TSSEEEEEGGGSSSSEESSSHGTCETTCEEEEEEEEEETTTTEEEEEST
T ss_pred CCCCCCEEEEEEEEEECCEEEEEEC-CcEEEEEEeehhcCccccccccccCCCCEEEEEEEEEECCCCeEEEEEC
Confidence 3689999999999999999999998 4899999999999999999999999999999999999999999999987
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A .... |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.2e-09 Score=129.94 Aligned_cols=207 Identities=13% Similarity=0.050 Sum_probs=161.3
Q ss_pred hHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000176 1660 TPDEFERLVRSSP----NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1735 (1924)
Q Consensus 1660 a~~~ferll~~~P----~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a 1735 (1924)
++..|.++|...| +.+..|...+..+...|+.+.|+..|++|++..|.. ...|..+.......| +.+.|
T Consensus 45 ~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~-----~~a~~~lg~~~~~~g--~~~~A 117 (296)
T PRK11189 45 ILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM-----ADAYNYLGIYLTQAG--NFDAA 117 (296)
T ss_pred HHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHCC--CHHHH
Confidence 3445566664333 457889999999999999999999999999877743 358888888889999 56999
Q ss_pred HHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCC
Q 000176 1736 VKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1813 (1924)
Q Consensus 1736 ~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p 1813 (1924)
.+.|++|++..|.. ..|..++.+|...|++++|.+.|++++...|.++.. ..+..+.... ++++|...|++++...+
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~-~~~~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYR-ALWLYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHccCCHHHHHHHHHHHHhhCC
Confidence 99999999999875 899999999999999999999999999999887631 1122222334 89999999988876553
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1814 RHKHIKFISQTAILEFKNGVADRGRSMFEGIL-------SEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1814 ~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL-------~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
.. .|. ++...+..|+...+ ..|+.++ ...|+..+.|..++..+.+.|+++.|+..|++|+.
T Consensus 197 ~~----~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 197 KE----QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred cc----ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 32 333 45555566766444 2444444 34455667899999999999999999999999999
|
|
| >cd05696 S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.22 E-value=3e-11 Score=112.41 Aligned_cols=69 Identities=25% Similarity=0.468 Sum_probs=65.5
Q ss_pred CcEEE-EEEEEe-ecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEec
Q 000176 1458 GDIVI-GQIKRV-ESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527 (1924)
Q Consensus 1458 G~~v~-G~V~~v-~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lsl 1527 (1924)
|++|+ |+|+++ .+||+||+|.+ +++||+|+|++++.+++++.+.|++||.++++|+++|+++++|.||+
T Consensus 1 G~v~~~g~V~~v~~~~G~~V~l~~-gv~G~i~~s~l~~~~~~~~~~~~~vG~~v~~kV~~id~~~~~i~lS~ 71 (71)
T cd05696 1 GAVVDSVKVTKVEPDLGAVFELKD-GLLGFVHISHLSDDKVPSDTGPFKAGTTHKARIIGYSPMDGLLQLSL 71 (71)
T ss_pred CcEeeeeEEEEEccCceEEEEeCC-CCEEEEEHHHCCcchhcCcccccCCCCEEEEEEEEEeCCCCEEEEeC
Confidence 78899 999999 69999999987 79999999999999999899999999999999999999999999986
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 4 (hs4). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >cd05708 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.8e-11 Score=114.30 Aligned_cols=77 Identities=52% Similarity=0.993 Sum_probs=72.1
Q ss_pred CCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccccc
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1532 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s~~ 1532 (1924)
++|+++.|+|+++.++|+||+|.+.++.|++|++++++.+..++.+.|++||.|+|+|+++|++++++.||+|+++|
T Consensus 1 ~~g~~v~g~V~~i~~~g~~v~l~~~~~~g~i~~~~l~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls~k~~~~ 77 (77)
T cd05708 1 KVGQKIDGTVRRVEDYGVFIDIDGTNVSGLCHKSEISDNRVADASKLFRVGDKVRAKVLKIDAEKKRISLGLKASYF 77 (77)
T ss_pred CCCCEEEEEEEEEEcceEEEEECCCCeEEEEEHHHCCCCccCCHhHeecCCCEEEEEEEEEeCCCCEEEEEEEeecC
Confidence 46999999999999999999997557999999999999988888899999999999999999999999999999865
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 12 (sc12). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.7e-11 Score=112.28 Aligned_cols=73 Identities=22% Similarity=0.504 Sum_probs=68.8
Q ss_pred cCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecc
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK 1528 (1924)
+++|+++.|+|+++.++|+||+|++ +++|++|++++++++..++.+.|++||.|+++|+++|+++++|.||+|
T Consensus 1 ~~~G~iv~g~V~~v~~~gi~v~l~~-~~~g~v~~s~l~~~~~~~~~~~~~~Gd~v~~~V~~~d~~~~~i~ls~~ 73 (73)
T cd05706 1 LKVGDILPGRVTKVNDRYVLVQLGN-KVTGPSFITDALDDYSEALPYKFKKNDIVRACVLSVDVPNKKIALSLR 73 (73)
T ss_pred CCCCCEEEEEEEEEeCCeEEEEeCC-CcEEEEEhhhccCccccccccccCCCCEEEEEEEEEeCCCCEEEEEEC
Confidence 4789999999999999999999987 799999999999998878889999999999999999999999999975
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.7e-11 Score=112.03 Aligned_cols=70 Identities=30% Similarity=0.558 Sum_probs=67.4
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeec
Q 000176 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831 (1924)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk 831 (1924)
|+++.|+|.+++++|+||+|++++.||+|.+++++++..++.+.|++||.++|+|+++|++++++.||+|
T Consensus 1 g~~~~g~V~~v~~~G~~V~l~~~~~gli~~s~l~~~~~~~~~~~~~~G~~i~v~v~~~d~~~~~i~ls~k 70 (70)
T cd05698 1 GLKTHGTIVKVKPNGCIVSFYNNVKGFLPKSELSEAFIKDPEEHFRVGQVVKVKVLSCDPEQQRLLLSCK 70 (70)
T ss_pred CCEEEEEEEEEecCcEEEEECCCCEEEEEHHHcChhhcCCHHHcccCCCEEEEEEEEEcCCCCEEEEEeC
Confidence 7899999999999999999999999999999999888889999999999999999999999999999986
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.9e-11 Score=111.82 Aligned_cols=70 Identities=37% Similarity=0.543 Sum_probs=66.9
Q ss_pred CcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecc
Q 000176 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528 (1924)
Q Consensus 1458 G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK 1528 (1924)
|+++.|+|+++.++|+||+|.+ ++.||+|+|+++++++.++.+.|++||.++++|+++|++++++.||+|
T Consensus 1 g~~~~g~V~~v~~~G~~V~l~~-~~~gli~~s~l~~~~~~~~~~~~~~G~~i~v~v~~~d~~~~~i~ls~k 70 (70)
T cd05698 1 GLKTHGTIVKVKPNGCIVSFYN-NVKGFLPKSELSEAFIKDPEEHFRVGQVVKVKVLSCDPEQQRLLLSCK 70 (70)
T ss_pred CCEEEEEEEEEecCcEEEEECC-CCEEEEEHHHcChhhcCCHHHcccCCCEEEEEEEEEcCCCCEEEEEeC
Confidence 7899999999999999999976 799999999999998889999999999999999999999999999986
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.8e-11 Score=111.15 Aligned_cols=73 Identities=37% Similarity=0.625 Sum_probs=70.8
Q ss_pred cCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeec
Q 000176 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831 (1924)
Q Consensus 759 ~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk 831 (1924)
+++|+++.|+|.++.++|+||++.+++.||+|.+++++.+..++...|++||+|.|+|+++|++++++.||+|
T Consensus 2 ~~~G~iv~g~V~~v~~~g~~V~l~~~~~g~ip~~~l~~~~~~~~~~~~~~G~~v~v~v~~vd~~~~~i~lS~k 74 (74)
T PF00575_consen 2 LKEGDIVEGKVTSVEDFGVFVDLGNGIEGFIPISELSDDRIDDPSEVYKIGQTVRVKVIKVDKEKGRIRLSLK 74 (74)
T ss_dssp SSTTSEEEEEEEEEETTEEEEEESTSSEEEEEGGGSSSSEESSSHGTCETTCEEEEEEEEEETTTTEEEEEST
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCcEEEEEEeehhcCccccccccccCCCCEEEEEEEEEECCCCeEEEEEC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999986
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A .... |
| >cd05697 S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.19 E-value=6e-11 Score=110.16 Aligned_cols=69 Identities=28% Similarity=0.622 Sum_probs=65.9
Q ss_pred CcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEec
Q 000176 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527 (1924)
Q Consensus 1458 G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lsl 1527 (1924)
|+++.|+|++|.++|+||+|++ ++.|++|++++++.+..++.+.|++||.++++|+++|+++++|.||+
T Consensus 1 G~~v~g~V~~v~~~Gv~V~l~~-~v~g~i~~~~l~~~~~~~~~~~~~~Gd~i~~~V~~id~~~~~i~ls~ 69 (69)
T cd05697 1 GQVVKGTIRKLRPSGIFVKLSD-HIKGLVPPMHLADVRLKHPEKKFKPGLKVKCRVLSVEPERKRLVLTL 69 (69)
T ss_pred CCEEEEEEEEEeccEEEEEecC-CcEEEEEHHHCCCccccCHHHcCCCCCEEEEEEEEEECCCCEEEEEC
Confidence 7899999999999999999986 79999999999999888888999999999999999999999999985
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 5 (hs5) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.6e-09 Score=134.24 Aligned_cols=226 Identities=12% Similarity=0.101 Sum_probs=179.0
Q ss_pred HHHHHhcCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCc-chhhH--HHHHHHHHHHH
Q 000176 1648 AEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIR-EENEK--LNIWVAYFNLE 1724 (1924)
Q Consensus 1648 ~e~~~~~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~-ee~ek--l~lWiayl~le 1724 (1924)
.+..+..++.+++...+++++..+|+++.++..++..+++.++++.|.+.+++.++.-... ++... ...|..++...
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4444445668889999999999999999999999999999999999999999999863322 21111 14454444321
Q ss_pred HHcCCCCHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH--Hhc-
Q 000176 1725 NEYGNPPEEAVVKVFQRALQYCD-----PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL--LKQ- 1796 (1924)
Q Consensus 1725 ~~~g~~~~e~a~~vferAl~~~~-----~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l--~~~- 1796 (1924)
. .+...+.+.++.+..| ...++..++..+...|++++|.+.+++++++++++....+.....+ +..
T Consensus 240 ~------~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~ 313 (409)
T TIGR00540 240 M------ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPE 313 (409)
T ss_pred H------HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCC
Confidence 1 1334556777777666 4599999999999999999999999999999988876432222222 223
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 000176 1797 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFE--GILSEYPKRTDLWSIYLDQEIRLGDVDLIRGL 1874 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe--~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~l 1874 (1924)
+.+.+...++++++..|.+.++.+...+|+++++.|++++|+..|+ .+++..|+..+ +..++.++.+.|+.+.|+.+
T Consensus 314 ~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 314 DNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHH
Confidence 7899999999999999998544788899999999999999999999 57778898766 44999999999999999999
Q ss_pred HHHHHh
Q 000176 1875 FERAIS 1880 (1924)
Q Consensus 1875 feral~ 1880 (1924)
|++++.
T Consensus 393 ~~~~l~ 398 (409)
T TIGR00540 393 RQDSLG 398 (409)
T ss_pred HHHHHH
Confidence 999876
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.3e-09 Score=128.76 Aligned_cols=86 Identities=28% Similarity=0.478 Sum_probs=71.5
Q ss_pred CCCchHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000176 1656 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLS-MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1734 (1924)
Q Consensus 1656 ~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~-~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~ 1734 (1924)
....+.+.|||.+.+-|-+..+|+.|.+++.. .++.+..|..|+||+..+.. ++-.-.+|-.|+.+++...++ ..
T Consensus 94 ~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~--dF~S~~lWdkyie~en~qks~--k~ 169 (577)
T KOG1258|consen 94 NAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGL--DFLSDPLWDKYIEFENGQKSW--KR 169 (577)
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhccc--chhccHHHHHHHHHHhccccH--HH
Confidence 36678899999999999999999999999975 56888899999999987765 444457999999999888854 77
Q ss_pred HHHHHHHHHhc
Q 000176 1735 VVKVFQRALQY 1745 (1924)
Q Consensus 1735 a~~vferAl~~ 1745 (1924)
...+|+|.+..
T Consensus 170 v~~iyeRilei 180 (577)
T KOG1258|consen 170 VANIYERILEI 180 (577)
T ss_pred HHHHHHHHHhh
Confidence 77777777754
|
|
| >cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.8e-11 Score=113.66 Aligned_cols=79 Identities=33% Similarity=0.520 Sum_probs=74.7
Q ss_pred hhhhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEe
Q 000176 1358 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436 (1924)
Q Consensus 1358 ~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSl 1436 (1924)
.+..+.++++|+++.|+|+++.++|+||+|+++++|++|++++++.+..++.+.|++||.|+|+|+++|.++++|.|||
T Consensus 5 l~~~~~~~~~G~i~~g~V~~v~~~G~fv~l~~~~~g~v~~~el~~~~~~~~~~~~~~Gd~v~vkV~~id~~~~~i~lsl 83 (83)
T cd04461 5 LPTNFSDLKPGMVVHGYVRNITPYGVFVEFLGGLTGLAPKSYISDEFVTDPSFGFKKGQSVTAKVTSVDEEKQRFLLSL 83 (83)
T ss_pred chhhHHhCCCCCEEEEEEEEEeeceEEEEcCCCCEEEEEHHHCCcccccCHHHhcCCCCEEEEEEEEEcCCCCEEEEeC
Confidence 4556778999999999999999999999999999999999999999999999999999999999999999999999986
|
Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.6e-10 Score=138.57 Aligned_cols=210 Identities=19% Similarity=0.192 Sum_probs=185.3
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHH--HH-HcCCCCHHHHHHHHHH
Q 000176 1665 ERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL--EN-EYGNPPEEAVVKVFQR 1741 (1924)
Q Consensus 1665 erll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~l--e~-~~g~~~~e~a~~vfer 1741 (1924)
+.++..+|+++..|-..+.++--+++.+.|.+.|+||++..|. .=.+|--+ |. ... ..|.|...|+.
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~--------faYayTLlGhE~~~~e--e~d~a~~~fr~ 480 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR--------FAYAYTLLGHESIATE--EFDKAMKSFRK 480 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc--------cchhhhhcCChhhhhH--HHHhHHHHHHh
Confidence 4566788999999999999999999999999999999976652 11233222 11 122 34889999999
Q ss_pred HHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHH
Q 000176 1742 ALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIK 1819 (1924)
Q Consensus 1742 Al~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~ 1819 (1924)
|+...+.. ++|+-++.+|.+.++++.|.-.|++|+.++|.+.-+...++.++.+. +.|+|..+|++|+...|.+. -
T Consensus 481 Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~--l 558 (638)
T KOG1126|consen 481 ALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP--L 558 (638)
T ss_pred hhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc--h
Confidence 99999875 99999999999999999999999999999999999999999999999 99999999999999999884 5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1820 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1820 ~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
..+..|.+++..+++++|...||.+-...|+..-+....+..+.+.|..+.|..-|--|.. +.|+..
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~--ldpkg~ 625 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD--LDPKGA 625 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc--CCCccc
Confidence 7788899999999999999999999999999999999999999999999999999999888 777655
|
|
| >PRK08582 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.5e-11 Score=123.90 Aligned_cols=75 Identities=28% Similarity=0.647 Sum_probs=70.6
Q ss_pred ccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
.+++|++|.|+|++|++||+||+|++ +++||+|+|++++.++.++.+.|++||.|+|+|+++|. +++|.||+|+.
T Consensus 2 ~~kvG~iv~G~V~~I~~fG~fV~L~~-~~~GlVhiSels~~~v~~~~~~l~vGD~VkvkV~~id~-~gkI~LSlk~~ 76 (139)
T PRK08582 2 SIEVGSKLQGKVTGITNFGAFVELPE-GKTGLVHISEVADNYVKDINDHLKVGDEVEVKVLNVED-DGKIGLSIKKA 76 (139)
T ss_pred CCcCCCEEEEEEEEEECCeEEEEECC-CCEEEEEeeccCcccccccccccCCCCEEEEEEEEECC-CCcEEEEEEec
Confidence 37899999999999999999999986 79999999999999999999999999999999999996 59999999985
|
|
| >cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.7e-10 Score=108.57 Aligned_cols=73 Identities=25% Similarity=0.406 Sum_probs=69.7
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEee
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1437 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk 1437 (1924)
+++|+++.|+|+++.++|+||+|+.+++|++|+++++|++..++.+.|++||.|+++|+++|++++++.||+|
T Consensus 1 ~~~G~iv~g~V~~v~~~gi~v~l~~~~~g~v~~s~l~~~~~~~~~~~~~~Gd~v~~~V~~~d~~~~~i~ls~~ 73 (73)
T cd05706 1 LKVGDILPGRVTKVNDRYVLVQLGNKVTGPSFITDALDDYSEALPYKFKKNDIVRACVLSVDVPNKKIALSLR 73 (73)
T ss_pred CCCCCEEEEEEEEEeCCeEEEEeCCCcEEEEEhhhccCccccccccccCCCCEEEEEEEEEeCCCCEEEEEEC
Confidence 4689999999999999999999999999999999999999888889999999999999999999999999985
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.3e-08 Score=113.63 Aligned_cols=225 Identities=15% Similarity=0.198 Sum_probs=187.4
Q ss_pred HhcCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCC
Q 000176 1652 LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1731 (1924)
Q Consensus 1652 ~~~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~ 1731 (1924)
+++.....|++.|-.++..+|...++.+.+...+-+.|+.|+|..+.+..+.+.+...+ .++..-.++..-+..-|-
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~-qr~lAl~qL~~Dym~aGl-- 122 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFE-QRLLALQQLGRDYMAAGL-- 122 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHHHHHHhhh--
Confidence 44556889999999999999999999999999999999999999999999876655433 334444455555556673
Q ss_pred HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHhc-CHHHHHHH
Q 000176 1732 EEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHS-----CKVWLRRVQRLLKQ-QQEGVQAV 1804 (1924)
Q Consensus 1732 ~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~-----~~vw~~~a~~l~~~-~~~~A~~l 1804 (1924)
.+.|+++|...+..... .+....++.||.....+++|.+.-+++.+.-++. ...|..+++-++.. +.++|+.+
T Consensus 123 ~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 123 LDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 49999999988764433 4899999999999999999999999999876544 33455666666666 99999999
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 000176 1805 VQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD-LWSIYLDQEIRLGDVDLIRGLFERAISL 1881 (1924)
Q Consensus 1805 ~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d-lw~~y~~le~k~gd~~~ar~lferal~~ 1881 (1924)
+++|++.+|++ +.+-+..|.++...|+++.|...++++++.+|.... +...+...|.+.|+.+..+..+.+++..
T Consensus 203 l~kAlqa~~~c--vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 203 LKKALQADKKC--VRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHhhCccc--eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 99999999988 588899999999999999999999999999998654 5677777888999999999999999983
|
|
| >cd05704 S1_Rrp5_repeat_hs13 S1_Rrp5_repeat_hs13: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-10 Score=108.94 Aligned_cols=71 Identities=28% Similarity=0.409 Sum_probs=67.1
Q ss_pred CCCCCEEEEEEEEEee-ceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEee
Q 000176 1365 LSPNMIVQGYVKNVTS-KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1437 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~-~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk 1437 (1924)
+++|+++.|.|+++.+ +|+|++|+++.+|++|+++++|.|+.++.+.|++||.|+|+|++++. +++.||+|
T Consensus 1 l~~G~iv~G~V~~i~~~~g~~v~l~~~~~Glvhis~~s~~~~~~~~~~~~~Gd~v~~kV~~~~~--~~i~LSl~ 72 (72)
T cd05704 1 LEEGAVTLGMVTKVIPHSGLTVQLPFGKTGLVSIFHLSDSYTENPLEGFKPGKIVRCCILSKKD--GKYQLSLR 72 (72)
T ss_pred CCCCCEEEEEEEEeeCCcEEEEECCCCCEEEEEHHHhcCcccCCHHHhCCCCCEEEEEEEEecC--CEEEEEeC
Confidence 4689999999999986 89999999999999999999999999999999999999999999983 99999986
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 13 (hs13). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.2e-09 Score=125.25 Aligned_cols=233 Identities=19% Similarity=0.302 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHHcC-----C--HHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC
Q 000176 1675 SFVWIKYMAFMLSMA-----D--VEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD 1747 (1924)
Q Consensus 1675 ~~~W~~y~~~~~~~~-----e--~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~ 1747 (1924)
..-|++++.+++..+ + ..+..-++++++...++.++ +|..|.......+ +.+.|..+.+|+..++|
T Consensus 261 ~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~e-----vw~dys~Y~~~is--d~q~al~tv~rg~~~sp 333 (660)
T COG5107 261 DSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEE-----VWFDYSEYLIGIS--DKQKALKTVERGIEMSP 333 (660)
T ss_pred cchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHhhcc--HHHHHHHHHHhcccCCC
Confidence 334999999987543 2 23445677899988888664 9999999888888 77999999999999998
Q ss_pred CHHHHHHHHHHHHHhCChHHHHHHHHHHHH----hcC--------------------------CCHHHHHHHHHHHHhc-
Q 000176 1748 PKKVHLALLGLYERTEQNKLADELLYKMIK----KFK--------------------------HSCKVWLRRVQRLLKQ- 1796 (1924)
Q Consensus 1748 ~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk----~~~--------------------------~~~~vw~~~a~~l~~~- 1796 (1924)
. +++.|+..|+-..+-+.....|+++.. +++ +-.-+|.-+.++..+.
T Consensus 334 s--L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~ 411 (660)
T COG5107 334 S--LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKR 411 (660)
T ss_pred c--hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 7 566666777666666666666665442 121 1123677788887887
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 000176 1797 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEF-KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLF 1875 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~-~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lf 1875 (1924)
..+.||.+|-++-+.--... .++..-|.+|+ ..|++.-|-.+|+-.|..+|+.......|..+++..++-..||++|
T Consensus 412 Gl~aaR~~F~k~rk~~~~~h--~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLF 489 (660)
T COG5107 412 GLEAARKLFIKLRKEGIVGH--HVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALF 489 (660)
T ss_pred hHHHHHHHHHHHhccCCCCc--ceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHH
Confidence 99999999999876531222 56777777766 5689999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000176 1876 ERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919 (1924)
Q Consensus 1876 eral~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v 1919 (1924)
|.++. .+...+.+.+|.+|+++|...|+...+-.+-+|..+.+
T Consensus 490 etsv~-r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~ 532 (660)
T COG5107 490 ETSVE-RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELV 532 (660)
T ss_pred HHhHH-HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc
Confidence 98887 45556778899999999999999988887777766554
|
|
| >cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-10 Score=108.04 Aligned_cols=68 Identities=31% Similarity=0.564 Sum_probs=65.0
Q ss_pred CcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEe
Q 000176 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1526 (1924)
Q Consensus 1458 G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~ls 1526 (1924)
|+++.|+|+++.++|+||+|.+ ++.||+|++++++.+..++.+.|++||.|+|+|+++|++++||.||
T Consensus 1 G~~v~g~V~~v~~~Gv~V~l~~-~~~G~v~~s~l~~~~~~~~~~~~~~Gd~v~~~v~~~d~~~~~i~ls 68 (68)
T cd05707 1 GDVVRGFVKNIANNGVFVTLGR-GVDARVRVSELSDSYLKDWKKRFKVGQLVKGKIVSIDPDNGRIEMT 68 (68)
T ss_pred CCEEEEEEEEEECccEEEEeCC-CCEEEEEHHHCCchhhcCHhhccCCCCEEEEEEEEEeCCCCEEecC
Confidence 7899999999999999999986 7999999999999999999999999999999999999999999886
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >cd04452 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.1e-10 Score=108.80 Aligned_cols=74 Identities=31% Similarity=0.556 Sum_probs=69.4
Q ss_pred CCCcEEEEEEEEeecceEEEEEecC-ceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEeccc
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~~-~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~ 1529 (1924)
++|+++.|+|.++.++|+||+|.+. ++.||+|+|++++.++.++.+.|++||.|+++|+++|.+++++.||+|+
T Consensus 2 ~~G~~~~g~V~~v~~~g~~v~l~~~~~~~gll~~s~l~~~~~~~~~~~~~~Gd~v~vkv~~~d~~~~~i~ls~k~ 76 (76)
T cd04452 2 EEGELVVVTVKSIADMGAYVSLLEYGNIEGMILLSELSRRRIRSIRKLVKVGRKEVVKVIRVDKEKGYIDLSKKR 76 (76)
T ss_pred CCCCEEEEEEEEEEccEEEEEEcCCCCeEEEEEhHHcCCcccCCHHHeeCCCCEEEEEEEEEECCCCEEEEEEcC
Confidence 5799999999999999999999753 5999999999999999999999999999999999999999999999874
|
S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Eukaryotic and archaeal Initiation Factor 2 (e- and aIF2, respectively) are heterotrimeric proteins with three subunits (alpha, beta, and gamma). IF2 plays a crucial role in the process of translation initiation. The IF2 gamma subunit contains a GTP-binding site. The IF2 beta and gamma subunits together are thought to be responsible for binding methionyl-initiator tRNA. The ternary complex consisting of IF2, GTP, and the methionyl-initiator tRNA binds to the small subunit of the ribosome, as part of a pre-initiation complex that scans the mRNA to find the AUG start codon. The IF2-bound GTP is hydrolyzed to GDP when the methionyl-initiator tRNA binds the AUG start codon, at which time the IF2 is released with its bound GDP. The large ribosomal subunit then joins with the small subunit to c |
| >cd05693 S1_Rrp5_repeat_hs1_sc1 S1_Rrp5_repeat_hs1_sc1: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.12 E-value=9e-11 Score=116.35 Aligned_cols=77 Identities=29% Similarity=0.607 Sum_probs=69.5
Q ss_pred cCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccc-------------------cCcccccCCCcEEEEEEEE
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-------------------DNIETIYRAGEKVKVKILK 1515 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~-------------------~~~~~~~~~Gd~Vk~~Vl~ 1515 (1924)
|++|++|.|+|++|.++|+||.|.+ ++.|++|+++++|.+. .++.+.|++||.|+|+|++
T Consensus 1 L~~G~vV~G~V~~v~~~gl~v~L~~-g~~G~v~~seis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~vGd~V~~kVi~ 79 (100)
T cd05693 1 LSEGMLVLGQVKEITKLDLVISLPN-GLTGYVPITNISDAYTERLEELDEESEEEDDEEELPDLEDLFSVGQLVRCKVVS 79 (100)
T ss_pred CCCCCEEEEEEEEEcCCCEEEECCC-CcEEEEEHHHhhHHHHHHHHHhhhhccccccccccCCHHHhccCCCEEEEEEEE
Confidence 5789999999999999999999976 8999999999998752 3477899999999999999
Q ss_pred EecC---CCeeEEecccccc
Q 000176 1516 VDKE---KRRISLGMKSSYF 1532 (1924)
Q Consensus 1516 id~e---~~ri~lslK~s~~ 1532 (1924)
+|++ ++||.||+|++..
T Consensus 80 ~d~~~~~~~~i~LSlr~~~v 99 (100)
T cd05693 80 LDKSKSGKKRIELSLEPELV 99 (100)
T ss_pred ccCCcCCCcEEEEEecHHHC
Confidence 9987 7999999999743
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 1 (hs1) and S. cerevisiae S1 repeat 1 (sc1). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-10 Score=107.34 Aligned_cols=68 Identities=31% Similarity=0.503 Sum_probs=65.5
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEe
Q 000176 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829 (1924)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lS 829 (1924)
|+++.|+|++++++|+||+|.+++.||+|.+++++.+..++.+.|++||.|+|+|+++|++++|+.||
T Consensus 1 G~~v~g~V~~v~~~Gv~V~l~~~~~G~v~~s~l~~~~~~~~~~~~~~Gd~v~~~v~~~d~~~~~i~ls 68 (68)
T cd05707 1 GDVVRGFVKNIANNGVFVTLGRGVDARVRVSELSDSYLKDWKKRFKVGQLVKGKIVSIDPDNGRIEMT 68 (68)
T ss_pred CCEEEEEEEEEECccEEEEeCCCCEEEEEHHHCCchhhcCHhhccCCCCEEEEEEEEEeCCCCEEecC
Confidence 78899999999999999999999999999999999999999999999999999999999999999886
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >cd05697 S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.11 E-value=2e-10 Score=106.69 Aligned_cols=69 Identities=26% Similarity=0.473 Sum_probs=66.2
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEee
Q 000176 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830 (1924)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSl 830 (1924)
|+++.|+|+++.++|+||++.+++.||+|.+++++.+..++...|++||.++|+|+++|++++++.|||
T Consensus 1 G~~v~g~V~~v~~~Gv~V~l~~~v~g~i~~~~l~~~~~~~~~~~~~~Gd~i~~~V~~id~~~~~i~ls~ 69 (69)
T cd05697 1 GQVVKGTIRKLRPSGIFVKLSDHIKGLVPPMHLADVRLKHPEKKFKPGLKVKCRVLSVEPERKRLVLTL 69 (69)
T ss_pred CCEEEEEEEEEeccEEEEEecCCcEEEEEHHHCCCccccCHHHcCCCCCEEEEEEEEEECCCCEEEEEC
Confidence 789999999999999999999999999999999998888888999999999999999999999999985
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 5 (hs5) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >PRK07252 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.6e-10 Score=116.59 Aligned_cols=75 Identities=32% Similarity=0.645 Sum_probs=70.8
Q ss_pred CCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEeccccc
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1531 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s~ 1531 (1924)
++|+++.|+|++|.++|+||+|.+ ++.||+|++++++.++.++.+.|++||.|+|+|+++|+++++|.||+|...
T Consensus 2 kvG~iv~G~V~~V~~~G~fVei~~-~~~GllhiseLs~~~~~~~~~~~~vGD~V~VkI~~iD~~~~ri~lSlk~~~ 76 (120)
T PRK07252 2 KIGDKLKGTITGIKPYGAFVALEN-GTTGLIHISEIKTGFIDNIHQLLKVGEEVLVQVVDFDEYTGKASLSLRTLE 76 (120)
T ss_pred CCCCEEEEEEEEEeCcEEEEEECC-CCEEEEEHHHcCCccccChhhccCCCCEEEEEEEEEeCCCCEEEEEEeecc
Confidence 579999999999999999999976 799999999999999988889999999999999999999999999998853
|
|
| >cd05690 S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-10 Score=106.97 Aligned_cols=68 Identities=37% Similarity=0.770 Sum_probs=63.2
Q ss_pred CcEEEEEEEEeecceEEEEEecCceeEEeeccccCc-ccccCcccccCCCcEEEEEEEEEecCCCeeEEe
Q 000176 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE-DHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1526 (1924)
Q Consensus 1458 G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~-~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~ls 1526 (1924)
|+++.|+|+++.+||+||+|++ +++||+|+++++| .+..++.+.|++||.|+|+|+++|.+++||+||
T Consensus 1 G~~~~g~V~~i~~~G~fv~l~~-~~~Glv~~~~l~~~~~~~~~~~~~~~G~~v~v~v~~id~~~~~i~l~ 69 (69)
T cd05690 1 GTVVSGKIKSITDFGIFVGLDG-GIDGLVHISDISWTQRVRHPSEIYKKGQEVEAVVLNIDVERERISLG 69 (69)
T ss_pred CCEEEEEEEEEEeeeEEEEeCC-CCEEEEEHHHCCCccccCChhhEECCCCEEEEEEEEEECCcCEEeCC
Confidence 7899999999999999999986 8999999999996 567778889999999999999999999999875
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 5 (ec5) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. |
| >cd05696 S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.5e-10 Score=106.31 Aligned_cols=69 Identities=22% Similarity=0.323 Sum_probs=65.5
Q ss_pred CCEEE-EEEEEE-ecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEee
Q 000176 762 NSVVH-GYVCNI-IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830 (1924)
Q Consensus 762 G~~~~-G~V~~i-~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSl 830 (1924)
|+++. |.|+++ .++|+||++.+++.||+|.|+++++....+...|++||.|.|+|+++|+.++++.|||
T Consensus 1 G~v~~~g~V~~v~~~~G~~V~l~~gv~G~i~~s~l~~~~~~~~~~~~~vG~~v~~kV~~id~~~~~i~lS~ 71 (71)
T cd05696 1 GAVVDSVKVTKVEPDLGAVFELKDGLLGFVHISHLSDDKVPSDTGPFKAGTTHKARIIGYSPMDGLLQLSL 71 (71)
T ss_pred CcEeeeeEEEEEccCceEEEEeCCCCEEEEEHHHCCcchhcCcccccCCCCEEEEEEEEEeCCCCEEEEeC
Confidence 67788 999998 7999999999999999999999998888899999999999999999999999999996
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 4 (hs4). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >PRK08582 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.6e-10 Score=118.79 Aligned_cols=79 Identities=25% Similarity=0.437 Sum_probs=74.6
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeeccccccc
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1444 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~~~ 1444 (1924)
+++|++|.|+|++|+++|+||.|+++++|+||+++++|.|+.++.+.|++||.|+|+|+++|. +++|.||+++....||
T Consensus 3 ~kvG~iv~G~V~~I~~fG~fV~L~~~~~GlVhiSels~~~v~~~~~~l~vGD~VkvkV~~id~-~gkI~LSlk~~~~~~~ 81 (139)
T PRK08582 3 IEVGSKLQGKVTGITNFGAFVELPEGKTGLVHISEVADNYVKDINDHLKVGDEVEVKVLNVED-DGKIGLSIKKAKDRPK 81 (139)
T ss_pred CcCCCEEEEEEEEEECCeEEEEECCCCEEEEEeeccCcccccccccccCCCCEEEEEEEEECC-CCcEEEEEEecccCch
Confidence 689999999999999999999999999999999999999999999999999999999999996 5999999999877664
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.2e-09 Score=140.35 Aligned_cols=248 Identities=16% Similarity=0.132 Sum_probs=160.6
Q ss_pred CCCchHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000176 1656 DAPRTPDEFERLVRSS-PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1734 (1924)
Q Consensus 1656 ~~p~a~~~ferll~~~-P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~ 1734 (1924)
+..+|...|+++.... .-+...|...+..+.+.+.+++|+++++.+++.-- ..+ ..++.++++++...| ..+.
T Consensus 305 ~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~-~~d---~~~~~~Li~~y~k~G--~~~~ 378 (697)
T PLN03081 305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF-PLD---IVANTALVDLYSKWG--RMED 378 (697)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCC-CCC---eeehHHHHHHHHHCC--CHHH
Confidence 3556666666665432 22345566666666666677777777666665321 111 235666777777777 4577
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC
Q 000176 1735 VVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK-FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1812 (1924)
Q Consensus 1735 a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~-~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~ 1812 (1924)
|.++|+++.+ ++...|..++..|.+.|+.++|.++|++|... ...+...|..++..+... ..++|.++|+.+.+..
T Consensus 379 A~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~ 456 (697)
T PLN03081 379 ARNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENH 456 (697)
T ss_pred HHHHHHhCCC--CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Confidence 7777776643 33466777777777777777777777777754 345566666777766666 7777777777777654
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHH
Q 000176 1813 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1892 (1924)
Q Consensus 1813 p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw 1892 (1924)
+-......|..+..++.+.|++++|..+|++.- ..| +...|..++..+..+|+.+.|+.++++++. +.|... ..|
T Consensus 457 g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~-~~y 531 (697)
T PLN03081 457 RIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKL-NNY 531 (697)
T ss_pred CCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCC-cch
Confidence 333334566777777777777777777776531 122 345677777777777777777777777766 555554 356
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1893 KKYLEYEKSVGEEERIEYVKQKAM 1916 (1924)
Q Consensus 1893 ~~yl~~E~~~G~~~~~~~v~~rAl 1916 (1924)
...++...+.|+.++|.++++...
T Consensus 532 ~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 532 VVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHH
Confidence 666777777777777777776654
|
|
| >cd05699 S1_Rrp5_repeat_hs7 S1_Rrp5_repeat_hs7: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.1e-10 Score=102.25 Aligned_cols=71 Identities=27% Similarity=0.394 Sum_probs=66.3
Q ss_pred CCEEEEEEEEEccCcEEEEEEecC-ceeEEEeCCcCCCCccchhhhccccCCCCeEeeEEEeecCCCeEEEEec
Q 000176 670 GSLVSGVVDVVTPNAVVVYVIAKG-YSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAK 742 (1924)
Q Consensus 670 G~iv~g~V~~~~~~g~~V~l~~~~-~~~g~i~~~~Lsd~~~~~~~~~~~~~~G~~i~~vl~id~~~~~i~ls~K 742 (1924)
|++|+|+|.++++++++|++ .+ +++|+||.+||||+.++++.+++++++||++..+++++...+.+.+|+|
T Consensus 1 G~lV~~~V~EKt~D~l~v~l--~~~~l~a~l~~~HLsD~~~k~~~~~~klrvG~~L~~~lvL~~~~r~i~lt~K 72 (72)
T cd05699 1 GKLVDARVLKKTLNGLEVAI--LPEEIRAFLPTMHLSDHVSNCPLLWHCLQEGDTIPNLMCLSNYKGRIILTKK 72 (72)
T ss_pred CceEEEEEEEEcCCcEEEEe--cCCCcEEEEEccccCCchhhCHHHHhhhhcCCCccceEEEeccccEEEEecC
Confidence 78999999999999999999 45 9999999999999999999999999999999888888888888999986
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 7 (hs7). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >PRK05807 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.1e-10 Score=118.05 Aligned_cols=74 Identities=31% Similarity=0.643 Sum_probs=69.6
Q ss_pred ccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
.+++|++|.|+|+.|.+||+||.| + +..||+|+|++++.++.++...|++||.|+|+|+++|. +++|.||+|+.
T Consensus 2 ~~~vG~vv~G~Vt~i~~~GafV~L-~-~~~Glvhiseis~~~v~~~~~~~kvGd~V~VkV~~id~-~gkI~LSlk~~ 75 (136)
T PRK05807 2 TLKAGSILEGTVVNITNFGAFVEV-E-GKTGLVHISEVADTYVKDIREHLKEQDKVKVKVISIDD-NGKISLSIKQA 75 (136)
T ss_pred CccCCCEEEEEEEEEECCeEEEEE-C-CEEEEEEhhhcccccccCccccCCCCCEEEEEEEEECC-CCcEEEEEEec
Confidence 468999999999999999999999 4 68999999999999999999999999999999999997 79999999984
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-08 Score=122.13 Aligned_cols=219 Identities=15% Similarity=0.071 Sum_probs=168.8
Q ss_pred CCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHH
Q 000176 1689 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKL 1767 (1924)
Q Consensus 1689 ~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~ 1767 (1924)
.+.+.+..-+.++|...+...+ .+...|.....++...| ..+.|...|++|++..|.. ..|..++.+|...|++++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~-~~a~~~~~~g~~~~~~g--~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDE-ERAQLHYERGVLYDSLG--LRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcH-hhHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHH
Confidence 4667788888888865554332 23467888888888889 5599999999999999875 999999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1768 ADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILS 1846 (1924)
Q Consensus 1768 A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~ 1846 (1924)
|.+.|+++++..|.+..+|..++..+... ++++|.+.|+++++..|.+....+| ..+....+++++|...|++++.
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~---~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW---LYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHccCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999 9999999999999999987422333 3334457899999999988776
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1847 EYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL-----SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1847 ~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~-----~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
..+. +.|. +.......|+...+ ..|+.+... .+.|+.. ..|..........|+.++|...|++|++.
T Consensus 194 ~~~~--~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~-ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 194 KLDK--EQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLC-ETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred hCCc--cccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5443 3343 23444456665544 355555531 1333334 46777777788999999999999999763
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-08 Score=123.12 Aligned_cols=230 Identities=17% Similarity=0.132 Sum_probs=188.0
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 000176 1666 RLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY 1745 (1924)
Q Consensus 1666 rll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~ 1745 (1924)
+++...|+++..|+..+-|++..+.+.+||..|.+|....|.-. ..|++|.......++. |.|...|-+|-+.
T Consensus 303 ~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fg-----paWl~fghsfa~e~Eh--dQAmaaY~tAarl 375 (611)
T KOG1173|consen 303 KLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFG-----PAWLAFGHSFAGEGEH--DQAMAAYFTAARL 375 (611)
T ss_pred HHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcccc-----HHHHHHhHHhhhcchH--HHHHHHHHHHHHh
Confidence 66677899999999999999999999999999999986544322 3799999888877854 8899999999998
Q ss_pred CCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC----C-ChH
Q 000176 1746 CDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR----H-KHI 1818 (1924)
Q Consensus 1746 ~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~----~-~~~ 1818 (1924)
.+.- .-++-++--|.++++++.|...|..++.++|.++-+....+-..+.. .+.+|...|+.++...+. . .+.
T Consensus 376 ~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~ 455 (611)
T KOG1173|consen 376 MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWE 455 (611)
T ss_pred ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchh
Confidence 8764 34444555677899999999999999999999999888888888877 999999999999843322 1 234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh--HHHHHHHHH
Q 000176 1819 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK--MKFLFKKYL 1896 (1924)
Q Consensus 1819 ~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~--~k~lw~~yl 1896 (1924)
.+|..+|..+.+.+.++.|...|+++|...|++.+.+...+-.+...|+++.|.+.|.+++. +.|.+ +..+.+.++
T Consensus 456 p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 456 PTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999888889999999999999999999 66655 334566666
Q ss_pred HH-HHHcCC
Q 000176 1897 EY-EKSVGE 1904 (1924)
Q Consensus 1897 ~~-E~~~G~ 1904 (1924)
+- +...|.
T Consensus 534 e~~~~~~~~ 542 (611)
T KOG1173|consen 534 EDSECKSGV 542 (611)
T ss_pred Hhhhhhccc
Confidence 54 444443
|
|
| >cd05691 S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Probab=99.06 E-value=5e-10 Score=105.36 Aligned_cols=71 Identities=32% Similarity=0.650 Sum_probs=67.9
Q ss_pred CcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEeccc
Q 000176 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529 (1924)
Q Consensus 1458 G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~ 1529 (1924)
|+++.|+|+++.++|+||+|.+ +++|+||++++++.++.++.+.|++||.++++|+++|++++++.||+|.
T Consensus 1 G~~v~g~V~~v~~~g~~v~l~~-~~~g~i~~~~~~~~~~~~~~~~~~~Gd~v~~~v~~~d~~~~~i~ls~k~ 71 (73)
T cd05691 1 GSIVTGKVTEVDAKGATVKLGD-GVEGFLRAAELSRDRVEDATERFKVGDEVEAKITNVDRKNRKISLSIKA 71 (73)
T ss_pred CCEEEEEEEEEECCeEEEEeCC-CCEEEEEHHHCCCccccCHHHccCCCCEEEEEEEEEeCCCCEEEEEEEE
Confidence 7899999999999999999986 7999999999999999899999999999999999999999999999986
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 6 (ec6) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.7e-08 Score=126.97 Aligned_cols=256 Identities=14% Similarity=0.092 Sum_probs=162.3
Q ss_pred CCchHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCC-CHHH
Q 000176 1657 APRTPDEFERLVRSSPN-SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP-PEEA 1734 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~-s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~-~~e~ 1734 (1924)
.-.|...|.++|..+|. -++..+-..-+..+++..+.|+..|+||++..|. .+...+++..+...+.+. ....
T Consensus 180 Y~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~-----~v~alv~L~~~~l~~~d~~s~~~ 254 (1018)
T KOG2002|consen 180 YRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPT-----CVSALVALGEVDLNFNDSDSYKK 254 (1018)
T ss_pred HHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChh-----hHHHHHHHHHHHHHccchHHHHH
Confidence 44445555555555543 2233333333344455555555555555544442 122333333333333311 1234
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhc-CHHHHHHHHHHHH
Q 000176 1735 VVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1809 (1924)
Q Consensus 1735 a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~---~~vw~~~a~~l~~~-~~~~A~~l~~ral 1809 (1924)
+...+.+|...++.+ .+...+++.|.-.++|+.+..+++.+++.-... ..-++.+|..+..+ ++++|..+|..++
T Consensus 255 ~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~ 334 (1018)
T KOG2002|consen 255 GVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL 334 (1018)
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 555555555555544 555666667777788888888888877654222 33477778888888 8888888888888
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhcCCCc
Q 000176 1810 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG----DVDLIRGLFERAISLSLPP 1885 (1924)
Q Consensus 1810 ~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~g----d~~~ar~lferal~~~~~p 1885 (1924)
+..+.+ ++-....+||++...|+++.|...||+++..+|++......++.+|...+ ..++|..+...++. ..|
T Consensus 335 k~~~d~-~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~--~~~ 411 (1018)
T KOG2002|consen 335 KADNDN-FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE--QTP 411 (1018)
T ss_pred ccCCCC-ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh--ccc
Confidence 888766 45667778888888888888888888888888888888777777777654 45678888888887 556
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 000176 1886 KKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1922 (1924)
Q Consensus 1886 k~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~~ 1922 (1924)
... ..|.....+.+ .+|......+|.+|++.+.+.
T Consensus 412 ~d~-~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~ 446 (1018)
T KOG2002|consen 412 VDS-EAWLELAQLLE-QTDPWASLDAYGNALDILESK 446 (1018)
T ss_pred ccH-HHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHc
Confidence 555 46666666544 456666688999998777653
|
|
| >cd05689 S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.8e-10 Score=104.56 Aligned_cols=71 Identities=34% Similarity=0.627 Sum_probs=64.1
Q ss_pred cCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcc-cccCcccccCCCcEEEEEEEEEecCCCeeEEe
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED-HVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1526 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~-~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~ls 1526 (1924)
|++|+++.|+|+++.+||+||+|.+ +++||+|+++++|. +..+..+.|++||.|+++|+++|.++++|.||
T Consensus 1 ~~~g~~~~g~V~~i~~~G~fv~l~~-~~~Gl~~~~~l~~~~~~~~~~~~~~~Gd~v~v~v~~id~~~~~i~~~ 72 (72)
T cd05689 1 YPEGTRLFGKVTNLTDYGCFVELEE-GVEGLVHVSEMDWTNKNIHPSKVVSLGDEVEVMVLDIDEERRRISLG 72 (72)
T ss_pred CcCCCEEEEEEEEEEeeEEEEEcCC-CCEEEEEEEeccCcccccCcccEeCCCCEEEEEEEEeeCCcCEEeCC
Confidence 5789999999999999999999987 79999999999865 44466788999999999999999999999875
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (ec4) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. |
| >PRK07252 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.5e-10 Score=113.20 Aligned_cols=76 Identities=24% Similarity=0.319 Sum_probs=72.3
Q ss_pred CCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000176 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1924)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~~ 835 (1924)
++|+++.|.|++|+++|+||++.+++.||+|.+++++.+..++...|++||.|.|+|+++|++++++.||++....
T Consensus 2 kvG~iv~G~V~~V~~~G~fVei~~~~~GllhiseLs~~~~~~~~~~~~vGD~V~VkI~~iD~~~~ri~lSlk~~~~ 77 (120)
T PRK07252 2 KIGDKLKGTITGIKPYGAFVALENGTTGLIHISEIKTGFIDNIHQLLKVGEEVLVQVVDFDEYTGKASLSLRTLEE 77 (120)
T ss_pred CCCCEEEEEEEEEeCcEEEEEECCCCEEEEEHHHcCCccccChhhccCCCCEEEEEEEEEeCCCCEEEEEEeeccc
Confidence 5799999999999999999999999999999999999998889899999999999999999999999999998754
|
|
| >cd05695 S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.3e-10 Score=101.93 Aligned_cols=66 Identities=27% Similarity=0.516 Sum_probs=60.7
Q ss_pred CcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEe
Q 000176 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1526 (1924)
Q Consensus 1458 G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~ls 1526 (1924)
|+++.|+|+++.++|+||+|.+ +++|++|.+++++.+.. .+.|++||.|+|+|+.+|++++||.||
T Consensus 1 G~~V~g~V~~i~~~G~~v~l~~-~v~g~v~~~~l~~~~~~--~~~~~~G~~i~~kVi~id~~~~~i~LS 66 (66)
T cd05695 1 GMLVNARVKKVLSNGLILDFLS-SFTGTVDFLHLDPEKSS--KSTYKEGQKVRARILYVDPSTKVVGLS 66 (66)
T ss_pred CCEEEEEEEEEeCCcEEEEEcC-CceEEEEHHHcCCccCc--ccCcCCCCEEEEEEEEEeCCCCEEecC
Confidence 7899999999999999999976 79999999999876544 778999999999999999999999886
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 3 (hs3). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.6e-08 Score=135.56 Aligned_cols=223 Identities=13% Similarity=0.085 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc--CCCHHHH
Q 000176 1675 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY--CDPKKVH 1752 (1924)
Q Consensus 1675 ~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~--~~~~~i~ 1752 (1924)
...|..++..|.+.|++++|+++|++.... ....|-.++..+.+.| ..++|.++|+++.+. .|+...|
T Consensus 259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~--------~~vt~n~li~~y~~~g--~~~eA~~lf~~M~~~g~~pd~~t~ 328 (697)
T PLN03081 259 TFVSCALIDMYSKCGDIEDARCVFDGMPEK--------TTVAWNSMLAGYALHG--YSEEALCLYYEMRDSGVSIDQFTF 328 (697)
T ss_pred ceeHHHHHHHHHHCCCHHHHHHHHHhCCCC--------ChhHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCCHHHH
Confidence 344455555555555555555555544321 0234555555555555 335555555555432 2334555
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 000176 1753 LALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1830 (1924)
Q Consensus 1753 ~~l~~i~~~~gk~e~A~~~fe~~lk~~-~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~ 1830 (1924)
..++..|.+.|++++|.++|+.+++.. +.+..+|..++..|.+. ++++|+.+|+++.+. .+..|..++..|.+
T Consensus 329 ~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~-----d~~t~n~lI~~y~~ 403 (697)
T PLN03081 329 SIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK-----NLISWNALIAGYGN 403 (697)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC-----CeeeHHHHHHHHHH
Confidence 555555555555555555555555442 44445555555555555 555555555554321 12445555555555
Q ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000176 1831 NGVADRGRSMFEGILSEY-PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERI 1908 (1924)
Q Consensus 1831 ~g~~e~Ar~lfe~aL~~~-Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~-~~~pk~~k~lw~~yl~~E~~~G~~~~~ 1908 (1924)
.|+.++|..+|++.+... .-+...|..++..+.+.|..++|+.+|+.+... .+.|+. ..|...++...+.|..++|
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~--~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA--MHYACMIELLGREGLLDEA 481 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc--cchHhHHHHHHhcCCHHHH
Confidence 555555555555554431 112233445555555555555555555555431 233322 2355555555555555555
Q ss_pred HHHHHH
Q 000176 1909 EYVKQK 1914 (1924)
Q Consensus 1909 ~~v~~r 1914 (1924)
.+++++
T Consensus 482 ~~~~~~ 487 (697)
T PLN03081 482 YAMIRR 487 (697)
T ss_pred HHHHHH
Confidence 555543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.2e-08 Score=119.01 Aligned_cols=252 Identities=11% Similarity=0.049 Sum_probs=214.2
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
..+..+.-+.++.++..+|-+.....-+++++..+++-.+--.+..+..+..|..+ --|++..-.+...+++ .
T Consensus 257 ~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a-----~sW~aVg~YYl~i~k~--s 329 (611)
T KOG1173|consen 257 GCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKA-----LSWFAVGCYYLMIGKY--S 329 (611)
T ss_pred cChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCC-----cchhhHHHHHHHhcCc--H
Confidence 45577778888899999999888888888899999998888888889998888654 4699999999999966 9
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 000176 1734 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1811 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~ 1811 (1924)
+||..|-+|....+.. ..|+.++..|.-.+..++|...|.+|-+.++..-.-.+-.+.=+.+. .++.|...|.+|+..
T Consensus 330 eARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai 409 (611)
T KOG1173|consen 330 EARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI 409 (611)
T ss_pred HHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 9999999999999886 99999999999999999999999999999976644444455556666 999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 000176 1812 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE----YPK---RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP 1884 (1924)
Q Consensus 1812 ~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~----~Pk---~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~ 1884 (1924)
+|.+. -+....|-+.|..+.+..|..+|+.+|.- .++ -..+|+.++..+.+.+.++.|...|+++|. +.
T Consensus 410 ~P~Dp--lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~ 485 (611)
T KOG1173|consen 410 APSDP--LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LS 485 (611)
T ss_pred CCCcc--hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cC
Confidence 99984 78888999999999999999999999832 222 234799999999999999999999999999 78
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1885 PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1885 pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
|+.. ..+....-.....|+.+.|...|.+|+-
T Consensus 486 ~k~~-~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 486 PKDA-STHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred CCch-hHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 7766 4555555556778999999999998874
|
|
| >cd05708 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-09 Score=104.25 Aligned_cols=74 Identities=32% Similarity=0.558 Sum_probs=69.8
Q ss_pred CCCCEEEEEEEEEecCeEEEEECC-CeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeeccc
Q 000176 760 HPNSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833 (1924)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~~-~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~ 833 (1924)
++|+++.|+|.+++++|+||++.+ ++.||+|.+++++++..++.+.|++||.|+|+|+++|++++++.||+|.+
T Consensus 1 ~~g~~v~g~V~~i~~~g~~v~l~~~~~~g~i~~~~l~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls~k~~ 75 (77)
T cd05708 1 KVGQKIDGTVRRVEDYGVFIDIDGTNVSGLCHKSEISDNRVADASKLFRVGDKVRAKVLKIDAEKKRISLGLKAS 75 (77)
T ss_pred CCCCEEEEEEEEEEcceEEEEECCCCeEEEEEHHHCCCCccCCHhHeecCCCEEEEEEEEEeCCCCEEEEEEEee
Confidence 369999999999999999999985 89999999999998888888999999999999999999999999999975
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 12 (sc12). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.9e-08 Score=123.36 Aligned_cols=227 Identities=12% Similarity=0.125 Sum_probs=180.2
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcch-hhHH--HHHHHHHH
Q 000176 1646 RAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREE-NEKL--NIWVAYFN 1722 (1924)
Q Consensus 1646 ~~~e~~~~~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee-~ekl--~lWiayl~ 1722 (1924)
+..+.....++.+++...+++++..+|+++.+....+..+++.|+++.|.+++.+..+......+ ..++ ..|..++.
T Consensus 158 ~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~ 237 (398)
T PRK10747 158 TRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMD 237 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 43445555677889999999999999999999999999999999999999999999987665322 1211 23444333
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHH
Q 000176 1723 LENEYGNPPEEAVVKVFQRALQYCD-PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEG 1800 (1924)
Q Consensus 1723 le~~~g~~~~e~a~~vferAl~~~~-~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~ 1800 (1924)
...... +.+.+.++++..-...+ .-.++..++..+...|+.++|..+++++++ .+.++.+...|+.. .. ++++
T Consensus 238 ~~~~~~--~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l--~~~~~~~ 312 (398)
T PRK10747 238 QAMADQ--GSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRL--KTNNPEQ 312 (398)
T ss_pred HHHHhc--CHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc--cCCChHH
Confidence 322222 23444444444333223 248999999999999999999999999998 45577777777664 34 8999
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1801 VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1801 A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
+.+.+++.++..|++ ..++..+|+++...+++++|+..|++++...|+..+ +..++.++.+.|+.+.|..+|++++.
T Consensus 313 al~~~e~~lk~~P~~--~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 313 LEKVLRQQIKQHGDT--PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHhhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999987 589999999999999999999999999999998654 55789999999999999999999987
|
|
| >cd05687 S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-09 Score=101.73 Aligned_cols=70 Identities=30% Similarity=0.534 Sum_probs=66.5
Q ss_pred CcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecc
Q 000176 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528 (1924)
Q Consensus 1458 G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK 1528 (1924)
|++|.|+|.++.++|+||+|.. +..|++|.+|+++.+..++.+.|++||.++|+|+++|+++++|.||+|
T Consensus 1 G~iv~g~V~~i~~~~~~v~l~~-~~~g~l~~~e~~~~~~~~~~~~~~~Gd~i~~~i~~~~~~~~~i~lS~~ 70 (70)
T cd05687 1 GDIVKGTVVSVDDDEVLVDIGY-KSEGIIPISEFSDDPIENGEDEVKVGDEVEVYVLRVEDEEGNVVLSKR 70 (70)
T ss_pred CCEEEEEEEEEeCCEEEEEeCC-CceEEEEHHHhCccccCCHhHcCCCCCEEEEEEEEEECCCCeEEEEeC
Confidence 7899999999999999999965 799999999999999999999999999999999999998999999985
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 1 of the Escherichia coli and Homo sapiens RPS1 (ec1 and hs1, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. |
| >cd04452 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-09 Score=102.97 Aligned_cols=73 Identities=25% Similarity=0.331 Sum_probs=68.7
Q ss_pred CCCCEEEEEEEEEecCeEEEEECC--CeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeecc
Q 000176 760 HPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832 (1924)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~~--~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~ 832 (1924)
+.|+++.|.|.++.++|+||++.+ ++.||+|.+++++.+..++.+.|++||.|+|+|+++|.+++++.||+|.
T Consensus 2 ~~G~~~~g~V~~v~~~g~~v~l~~~~~~~gll~~s~l~~~~~~~~~~~~~~Gd~v~vkv~~~d~~~~~i~ls~k~ 76 (76)
T cd04452 2 EEGELVVVTVKSIADMGAYVSLLEYGNIEGMILLSELSRRRIRSIRKLVKVGRKEVVKVIRVDKEKGYIDLSKKR 76 (76)
T ss_pred CCCCEEEEEEEEEEccEEEEEEcCCCCeEEEEEhHHcCCcccCCHHHeeCCCCEEEEEEEEEECCCCEEEEEEcC
Confidence 469999999999999999999974 6999999999999999999999999999999999999999999999874
|
S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Eukaryotic and archaeal Initiation Factor 2 (e- and aIF2, respectively) are heterotrimeric proteins with three subunits (alpha, beta, and gamma). IF2 plays a crucial role in the process of translation initiation. The IF2 gamma subunit contains a GTP-binding site. The IF2 beta and gamma subunits together are thought to be responsible for binding methionyl-initiator tRNA. The ternary complex consisting of IF2, GTP, and the methionyl-initiator tRNA binds to the small subunit of the ribosome, as part of a pre-initiation complex that scans the mRNA to find the AUG start codon. The IF2-bound GTP is hydrolyzed to GDP when the methionyl-initiator tRNA binds the AUG start codon, at which time the IF2 is released with its bound GDP. The large ribosomal subunit then joins with the small subunit to c |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.7e-09 Score=125.17 Aligned_cols=214 Identities=18% Similarity=0.186 Sum_probs=138.5
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhh------------------HHH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE------------------KLN 1715 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~e------------------kl~ 1715 (1924)
+++.++|+-.||.++..+|.+..+|..++-.+.+.+.-..|..+++||++..|..-+.- .|.
T Consensus 298 nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~ 377 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLD 377 (579)
T ss_pred cCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 56799999999999999999999999999999999999999999999998777532100 011
Q ss_pred HHHHH----HHHHH-----HcCC----C---CHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 000176 1716 IWVAY----FNLEN-----EYGN----P---PEEAVVKVFQRALQYCDP---KKVHLALLGLYERTEQNKLADELLYKMI 1776 (1924)
Q Consensus 1716 lWiay----l~le~-----~~g~----~---~~e~a~~vferAl~~~~~---~~i~~~l~~i~~~~gk~e~A~~~fe~~l 1776 (1924)
=|+.+ ..+-. ..+. . ......+.|-.|....+. -+++..|+-+|..+++|++|.+.|+.++
T Consensus 378 ~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL 457 (579)
T KOG1125|consen 378 KWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAAL 457 (579)
T ss_pred HHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHH
Confidence 22210 00000 0000 0 012334445555544442 2666666667777777777777777777
Q ss_pred HhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q 000176 1777 KKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR---- 1851 (1924)
Q Consensus 1777 k~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~---- 1851 (1924)
...|.+..+|.+|+..+... +.++|.+.|.|||+.-|.. +.+|+.+|.-++..|.|.+|...|=.+|...++.
T Consensus 458 ~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y--VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~ 535 (579)
T KOG1125|consen 458 QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY--VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHN 535 (579)
T ss_pred hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe--eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccc
Confidence 76677777777777766666 7777777777777776666 4677777777777777777777777776654441
Q ss_pred ------HHHHHHHHHHHHHcCCHH
Q 000176 1852 ------TDLWSIYLDQEIRLGDVD 1869 (1924)
Q Consensus 1852 ------~dlw~~y~~le~k~gd~~ 1869 (1924)
..+|..+-...+-.+..|
T Consensus 536 ~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 536 KAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred cCCcchHHHHHHHHHHHHHcCCch
Confidence 136665554444444444
|
|
| >cd05684 S1_DHX8_helicase S1_DHX8_helicase: The N-terminal S1 domain of human ATP-dependent RNA helicase DHX8, a DEAH (Asp-Glu-Ala-His) box polypeptide | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-09 Score=103.73 Aligned_cols=71 Identities=34% Similarity=0.601 Sum_probs=65.8
Q ss_pred CcEEEEEEEEeecceEEEEEecC--ceeEEeeccccCcccc-cCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1458 GDIVIGQIKRVESYGLFITIENT--NLVGLCHVSELSEDHV-DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1458 G~~v~G~V~~v~~~GvFV~l~~~--~v~gl~h~sels~~~~-~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
|+++.|+|+++.+||+||+|++. +++||+|++++++.+. .++.+.|++||.|+++|+++| ++++.||+|..
T Consensus 1 G~~~~g~V~~v~~~G~fv~l~~~~~~~~gll~~s~l~~~~~~~~~~~~~~~Gd~v~v~v~~vd--~~~i~~s~k~~ 74 (79)
T cd05684 1 GKIYKGKVTSIMDFGCFVQLEGLKGRKEGLVHISQLSFEGRVANPSDVVKRGQKVKVKVISIQ--NGKISLSMKDV 74 (79)
T ss_pred CCEEEEEEEEEEeeeEEEEEeCCCCCcEEEEEhHhccCCCCcCChhheeCCCCEEEEEEEEEe--CCEEEEEEEec
Confidence 78999999999999999999853 6999999999999886 888899999999999999999 89999999874
|
The DEAH-box RNA helicases are thought to play key roles in pre-mRNA splicing and DHX8 facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome. DHX8 is also known as HRH1 (human RNA helicase 1) in Homo sapiens and PRP22 in Saccharomyces cerevisiae. |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.9e-08 Score=123.41 Aligned_cols=224 Identities=16% Similarity=0.148 Sum_probs=187.4
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1736 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~ 1736 (1924)
...+...|...+..+|++....+--|.+.+..+++-.|..+|.+||.+.|.....-++-+|.-+. ..+ ..+.|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~----kl~--~~~~a~ 219 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFW----KLG--MSEKAL 219 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHH----hcc--chhhHH
Confidence 45778899999999999999999999999999999999999999998777543333444554433 345 348899
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHH---hCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 000176 1737 KVFQRALQYCDPK-KVHLALLGLYER---TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1811 (1924)
Q Consensus 1737 ~vferAl~~~~~~-~i~~~l~~i~~~---~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~ 1811 (1924)
..|+||++.+|.. ..+..|+.+-.. ...+..+..++.++.+.++.+|.+...++.+++-. ++..+..+...|+..
T Consensus 220 ~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 220 LAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 9999999999965 777777776544 35578899999999999999999999999999888 999999999999987
Q ss_pred CCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1812 LPRHKHI--KFISQTAILEFKNGVADRGRSMFEGILSEYPKR-TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1812 ~p~~~~~--~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~-~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
. .+.++ ..++.+|..++.+|++|.|..+|..+++..|++ .--..-.++++++.|+.+.+...||+++. ..|..+
T Consensus 300 t-~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k--~~p~~~ 376 (1018)
T KOG2002|consen 300 T-ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLK--QLPNNY 376 (1018)
T ss_pred h-hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHH--hCcchH
Confidence 6 33333 468999999999999999999999999999998 44467789999999999999999999998 556665
Q ss_pred H
Q 000176 1889 K 1889 (1924)
Q Consensus 1889 k 1889 (1924)
+
T Consensus 377 e 377 (1018)
T KOG2002|consen 377 E 377 (1018)
T ss_pred H
Confidence 3
|
|
| >cd05690 S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.6e-10 Score=102.17 Aligned_cols=68 Identities=29% Similarity=0.423 Sum_probs=63.3
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEecCCccCc-ccccCcccCCCCCCEEEEEEEEeeCCCCeEEEe
Q 000176 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD-GQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829 (1924)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~-~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lS 829 (1924)
|+++.|.|++|+++|+||++.+++.||+|.+++++ ....++.+.|++||.|+|+|+++|.+++|+.||
T Consensus 1 G~~~~g~V~~i~~~G~fv~l~~~~~Glv~~~~l~~~~~~~~~~~~~~~G~~v~v~v~~id~~~~~i~l~ 69 (69)
T cd05690 1 GTVVSGKIKSITDFGIFVGLDGGIDGLVHISDISWTQRVRHPSEIYKKGQEVEAVVLNIDVERERISLG 69 (69)
T ss_pred CCEEEEEEEEEEeeeEEEEeCCCCEEEEEHHHCCCccccCChhhEECCCCEEEEEEEEEECCcCEEeCC
Confidence 67899999999999999999999999999999986 567788889999999999999999999999875
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 5 (ec5) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.6e-08 Score=112.80 Aligned_cols=241 Identities=15% Similarity=0.209 Sum_probs=147.8
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Q 000176 1667 LVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1746 (1924)
Q Consensus 1667 ll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~ 1746 (1924)
.+..||++...|.++++++..++..++.|++|++.+..+|+-+ ..|..||.-|+... +..+.+.+|-|++.-.
T Consensus 34 rIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~-----~aw~ly~s~ELA~~--df~svE~lf~rCL~k~ 106 (660)
T COG5107 34 RIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIME-----HAWRLYMSGELARK--DFRSVESLFGRCLKKS 106 (660)
T ss_pred HhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCcccc-----HHHHHHhcchhhhh--hHHHHHHHHHHHHhhh
Confidence 4577888888899999988888888999999998888887644 37888888888887 4588888888888766
Q ss_pred CCHHHHHHHHHHHHHhCC------hHHHHHHHHHHHH--hc-CCCHHHHHHHHHHHHh---------c-CHHHHHHHHHH
Q 000176 1747 DPKKVHLALLGLYERTEQ------NKLADELLYKMIK--KF-KHSCKVWLRRVQRLLK---------Q-QQEGVQAVVQR 1807 (1924)
Q Consensus 1747 ~~~~i~~~l~~i~~~~gk------~e~A~~~fe~~lk--~~-~~~~~vw~~~a~~l~~---------~-~~~~A~~l~~r 1807 (1924)
-...+|..|+.+..+-.. .-...+.|+-.+. .| +.+..+|..|+.|+.. + ++|..|..|.|
T Consensus 107 l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~r 186 (660)
T COG5107 107 LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMR 186 (660)
T ss_pred ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 667777777776554431 1222333333332 23 5677777777777653 2 56777777777
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHh-------CC----------C-CHHHHH
Q 000176 1808 ALLSLPRHKHIKFISQTAILEFKNGV-------------ADRGRSMFEGILSE-------YP----------K-RTDLWS 1856 (1924)
Q Consensus 1808 al~~~p~~~~~~~~~~~A~le~~~g~-------------~e~Ar~lfe~aL~~-------~P----------k-~~dlw~ 1856 (1924)
||.. |-+.--++|..|-+||...+. +-.||+.|+..... +| . ...-|.
T Consensus 187 al~t-P~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~Wl 265 (660)
T COG5107 187 ALQT-PMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWL 265 (660)
T ss_pred HHcC-ccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhh
Confidence 7754 344334677777777764332 34566666655321 11 1 011366
Q ss_pred HHHHHHHHcC-----C--HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1857 IYLDQEIRLG-----D--VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1857 ~y~~le~k~g-----d--~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
.++.+|...| + -.+.--+|+.++. ..+=.. .+|..|-.+-...+|.+.|...-.|++++
T Consensus 266 NwIkwE~en~l~L~~~~~~qRi~y~~~q~~~--y~~~~~-evw~dys~Y~~~isd~q~al~tv~rg~~~ 331 (660)
T COG5107 266 NWIKWEMENGLKLGGRPHEQRIHYIHNQILD--YFYYAE-EVWFDYSEYLIGISDKQKALKTVERGIEM 331 (660)
T ss_pred hHhhHhhcCCcccCCCcHHHHHHHHHHHHHH--HhhhhH-HHHHHHHHHHhhccHHHHHHHHHHhcccC
Confidence 6666665321 1 1234455566555 222222 45655555555555555555555555443
|
|
| >cd05695 S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-09 Score=99.57 Aligned_cols=66 Identities=29% Similarity=0.384 Sum_probs=60.8
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEe
Q 000176 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829 (1924)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lS 829 (1924)
|+++.|.|++++++|+||++.+++.||+|.++++..... .+.|++||.|.|+|+++|++++|+.||
T Consensus 1 G~~V~g~V~~i~~~G~~v~l~~~v~g~v~~~~l~~~~~~--~~~~~~G~~i~~kVi~id~~~~~i~LS 66 (66)
T cd05695 1 GMLVNARVKKVLSNGLILDFLSSFTGTVDFLHLDPEKSS--KSTYKEGQKVRARILYVDPSTKVVGLS 66 (66)
T ss_pred CCEEEEEEEEEeCCcEEEEEcCCceEEEEHHHcCCccCc--ccCcCCCCEEEEEEEEEeCCCCEEecC
Confidence 789999999999999999999999999999999865544 778999999999999999999999886
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 3 (hs3). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >PRK08059 general stress protein 13; Validated | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.5e-09 Score=112.35 Aligned_cols=78 Identities=36% Similarity=0.748 Sum_probs=73.4
Q ss_pred ccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1452 ~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
+.++++|++|.|+|.++.++|+||+|.+ ++.|++|++++++.++.++.+.|++||.|+|+|+++|.+++++.||+|+.
T Consensus 2 ~~~~k~G~iv~G~V~~i~~~G~fV~i~~-~~~Gli~~sel~~~~~~~~~~~~~vGD~I~vkI~~id~~~~~i~lslk~~ 79 (123)
T PRK08059 2 MSQYEVGSVVTGKVTGIQPYGAFVALDE-ETQGLVHISEITHGFVKDIHDFLSVGDEVKVKVLSVDEEKGKISLSIRAT 79 (123)
T ss_pred cccCCCCCEEEEEEEEEecceEEEEECC-CCEEEEEHHHCCcccccCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEEc
Confidence 4568999999999999999999999986 79999999999999988888999999999999999999999999999986
|
|
| >cd05691 S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.2e-09 Score=101.00 Aligned_cols=72 Identities=24% Similarity=0.436 Sum_probs=69.0
Q ss_pred CCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecc
Q 000176 1368 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439 (1924)
Q Consensus 1368 G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~ 1439 (1924)
|+++.|+|+++.++|+||+|.++++|++|++++++.+..++.+.|++||.++++|+++|++++++.||+|..
T Consensus 1 G~~v~g~V~~v~~~g~~v~l~~~~~g~i~~~~~~~~~~~~~~~~~~~Gd~v~~~v~~~d~~~~~i~ls~k~~ 72 (73)
T cd05691 1 GSIVTGKVTEVDAKGATVKLGDGVEGFLRAAELSRDRVEDATERFKVGDEVEAKITNVDRKNRKISLSIKAK 72 (73)
T ss_pred CCEEEEEEEEEECCeEEEEeCCCCEEEEEHHHCCCccccCHHHccCCCCEEEEEEEEEeCCCCEEEEEEEEc
Confidence 789999999999999999999999999999999999999999999999999999999999999999999864
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 6 (ec6) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. |
| >cd05692 S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Probab=98.96 E-value=2e-09 Score=99.91 Aligned_cols=69 Identities=35% Similarity=0.783 Sum_probs=65.3
Q ss_pred CcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecc
Q 000176 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528 (1924)
Q Consensus 1458 G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK 1528 (1924)
|+++.|+|+++.++|+||.+.+ ++.|++|++++++.++.++.+.|++||.|+++|+++|+ ++++.||+|
T Consensus 1 G~~~~g~V~~i~~~g~~v~i~~-~~~g~l~~~~l~~~~~~~~~~~~~~Gd~v~v~v~~~~~-~~~i~ls~k 69 (69)
T cd05692 1 GSVVEGTVTRLKPFGAFVELGG-GISGLVHISQIAHKRVKDVKDVLKEGDKVKVKVLSIDA-RGRISLSIK 69 (69)
T ss_pred CCEEEEEEEEEEeeeEEEEECC-CCEEEEEhHHcCCcccCCHHHccCCCCEEEEEEEEECC-CCcEEEEEC
Confidence 7899999999999999999976 79999999999999988888999999999999999998 899999986
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (hs4) of the H. sapiens RPS1 homolog. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. |
| >cd05686 S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.2e-09 Score=99.62 Aligned_cols=70 Identities=24% Similarity=0.355 Sum_probs=64.5
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCC-CcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEe
Q 000176 1366 SPNMIVQGYVKNVTSKGCFIMLSR-KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~fV~l~~-~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSl 1436 (1924)
+.|+++.|.|+++.++|+||+|.. ..+|++|+++++|.++.++.+.|++||.|+++|+++|.++ ++.||+
T Consensus 2 ~~g~~~~g~V~~i~~fG~fv~l~~~~~eGlvh~sel~~~~~~~~~~~~~~Gd~v~vkv~~vd~~~-ki~ls~ 72 (73)
T cd05686 2 ALYQIFKGEVASVTEYGAFVKIPGCRKQGLVHKSHMSSCRVDDPSEVVDVGEKVWVKVIGREMKD-KMKLSL 72 (73)
T ss_pred cCCCEEEEEEEEEEeeeEEEEECCCCeEEEEEchhhCCCcccCHhhEECCCCEEEEEEEEECCCC-cEEEEe
Confidence 479999999999999999999953 2699999999999999999999999999999999999865 999987
|
pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was identified through a yeast two-hybrid interaction screen of a human kidney cDNA library using the pinin (pnn) protein as bait. pNO40 is thought to play a role in ribosome maturation and/or biogenesis. |
| >PHA02945 interferon resistance protein; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.5e-09 Score=98.86 Aligned_cols=73 Identities=25% Similarity=0.373 Sum_probs=67.8
Q ss_pred cCCCcEEEEEEEEeecceEEEEEecC-ceeEEeecccc--CcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSEL--SEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~~~-~v~gl~h~sel--s~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
-.+|+++-|+|+. .+||+||.|+.- +..||+|+||+ +..++++ .+.+ +||+|.|+|+.+|+.++.|-||||.-
T Consensus 9 P~~GelvigtV~~-~d~ga~v~L~EY~g~eg~i~~seveva~~wvK~-rd~l-~GqkvV~KVirVd~~kg~IDlSlK~V 84 (88)
T PHA02945 9 PNVGDVLKGKVYE-NGYALYIDLFDYPHSEAILAESVQMHMNRYFKY-RDKL-VGKTVKVKVIRVDYTKGYIDVNYKRM 84 (88)
T ss_pred CCCCcEEEEEEEe-cCceEEEEecccCCcEEEEEeehhhhccceEee-eeEe-cCCEEEEEEEEECCCCCEEEeEeeEc
Confidence 3689999999999 999999999865 89999999955 9999999 8888 99999999999999999999999973
|
|
| >cd05689 S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.7e-09 Score=100.10 Aligned_cols=71 Identities=27% Similarity=0.407 Sum_probs=64.2
Q ss_pred cCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcc-cccCcccCCCCCCEEEEEEEEeeCCCCeEEEe
Q 000176 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG-QRADLSKTYYVGQSVRSNILDVNSETGRITLS 829 (1924)
Q Consensus 759 ~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~-~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lS 829 (1924)
+++|+.+.|.|++|+++|+||++.+++.||+|.+++++. ...++...|++||.|+|+|+++|.+++++.|+
T Consensus 1 ~~~g~~~~g~V~~i~~~G~fv~l~~~~~Gl~~~~~l~~~~~~~~~~~~~~~Gd~v~v~v~~id~~~~~i~~~ 72 (72)
T cd05689 1 YPEGTRLFGKVTNLTDYGCFVELEEGVEGLVHVSEMDWTNKNIHPSKVVSLGDEVEVMVLDIDEERRRISLG 72 (72)
T ss_pred CcCCCEEEEEEEEEEeeEEEEEcCCCCEEEEEEEeccCcccccCcccEeCCCCEEEEEEEEeeCCcCEEeCC
Confidence 467999999999999999999999999999999999864 44467788999999999999999999999875
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (ec4) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. |
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.4e-08 Score=122.50 Aligned_cols=268 Identities=17% Similarity=0.253 Sum_probs=184.9
Q ss_pred HHHHHHHHHhcCC-CCchHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhcCCcchhhHHH
Q 000176 1644 EIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLS-------MADVEKARSIAERALQTINIREENEKLN 1715 (1924)
Q Consensus 1644 ~~~~~e~~~~~~~-~p~a~~~ferll~~~P~s~~~W~~y~~~~~~-------~~e~dkAr~v~eraL~~i~~~ee~ekl~ 1715 (1924)
+|..++.-+..+. .++....|+++| .+-++..+|..|+.|... .++++.-|.+|+|||+...++-. +-..
T Consensus 152 ~Wl~d~~~mt~s~~~~~v~~~~ekal-~dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t-~G~~ 229 (881)
T KOG0128|consen 152 EWLKDELSMTQSEERKEVEELFEKAL-GDYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT-EGAA 229 (881)
T ss_pred HHHHHHHhhccCcchhHHHHHHHHHh-cccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc-ccHH
Confidence 4666666554333 777778899985 567899999999999863 35799999999999997776533 4467
Q ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHHHhc-----------------------------------------------CC
Q 000176 1716 IWVAYFNLENEYGNP-PEEAVVKVFQRALQY-----------------------------------------------CD 1747 (1924)
Q Consensus 1716 lWiayl~le~~~g~~-~~e~a~~vferAl~~-----------------------------------------------~~ 1747 (1924)
+|..|..++..+-.. ..+.....|.+.+.. .+
T Consensus 230 ~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~ 309 (881)
T KOG0128|consen 230 IWEMYREFEVTYLCNVEQRQVIALFVRELKQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEP 309 (881)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhH
Confidence 899998887765311 112234444444432 22
Q ss_pred C-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc--CH--------------------------
Q 000176 1748 P-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ--QQ-------------------------- 1798 (1924)
Q Consensus 1748 ~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~--~~-------------------------- 1798 (1924)
. ...|..|++....+|..-....+|++++..+......|+.|+.++-.. -.
T Consensus 310 ~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rall 389 (881)
T KOG0128|consen 310 IKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALL 389 (881)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHH
Confidence 2 266888888888899999999999999988888888888887755433 11
Q ss_pred ----------------------------------------------HHHHHHHHHHHHhCC------CCChHHHHHHHHH
Q 000176 1799 ----------------------------------------------EGVQAVVQRALLSLP------RHKHIKFISQTAI 1826 (1924)
Q Consensus 1799 ----------------------------------------------~~A~~l~~ral~~~p------~~~~~~~~~~~A~ 1826 (1924)
+..++.|.+|...+. ......+...||+
T Consensus 390 AleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~ 469 (881)
T KOG0128|consen 390 ALERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQ 469 (881)
T ss_pred HHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 112223333322211 0111345666677
Q ss_pred HHH-HcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCC
Q 000176 1827 LEF-KNGVADRGRSMFEGILSEYPKRTD-LWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGE 1904 (1924)
Q Consensus 1827 le~-~~g~~e~Ar~lfe~aL~~~Pk~~d-lw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~ 1904 (1924)
+|. .+++++.||.+....+...--+.. .|..|++++...|+...+|.++.+|+.....|..+..+...|..||..+|+
T Consensus 470 ~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gt 549 (881)
T KOG0128|consen 470 VEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGT 549 (881)
T ss_pred HHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhcccc
Confidence 776 345778888888777765555555 899999999999999999998888888666666666788888899999999
Q ss_pred HHHHHHHHH
Q 000176 1905 EERIEYVKQ 1913 (1924)
Q Consensus 1905 ~~~~~~v~~ 1913 (1924)
++....+-+
T Consensus 550 l~~~~~~~~ 558 (881)
T KOG0128|consen 550 LESFDLCPE 558 (881)
T ss_pred HHHHhhhHH
Confidence 877554433
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.1e-08 Score=110.97 Aligned_cols=227 Identities=13% Similarity=0.080 Sum_probs=186.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHH
Q 000176 1679 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLG 1757 (1924)
Q Consensus 1679 ~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~ 1757 (1924)
.+.+.+++.+|-+.+|...++.+|+..+.-+ -++-+-..+.+.. +.+.|..+|...+...|.+ .+...++.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~d------TfllLskvY~rid--QP~~AL~~~~~gld~fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPD------TFLLLSKVYQRID--QPERALLVIGEGLDSFPFDVTYLLGQAR 298 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchh------HHHHHHHHHHHhc--cHHHHHHHHhhhhhcCCchhhhhhhhHH
Confidence 5677888999999999999999998877533 3444445566667 5699999999999998887 78888999
Q ss_pred HHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHH
Q 000176 1758 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1836 (1924)
Q Consensus 1758 i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~ 1836 (1924)
+++..+++++|.++|+.+++..+.+.+..-..+.-++.. +++-|..+|.|.|+.--.+ ++++.+.|...+--+++|-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s--peLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS--PELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC--hHHHhhHHHHHHhhcchhh
Confidence 999999999999999999998887777666666656666 8999999999999876544 5899999988888889999
Q ss_pred HHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000176 1837 GRSMFEGILSEY--PK-RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQ 1913 (1924)
Q Consensus 1837 Ar~lfe~aL~~~--Pk-~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~ 1913 (1924)
+..-|++++... |. ..|+|+.+.......||+.-|...|.-++. ..+... .-++...-++.+.|+++.|+.++.
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~-ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHG-EALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchH-HHHHhHHHHHhhcCchHHHHHHHH
Confidence 999999998764 33 578999999888889999999999999998 566666 577888888999999999999988
Q ss_pred HHHHH
Q 000176 1914 KAMEY 1918 (1924)
Q Consensus 1914 rAle~ 1918 (1924)
.|...
T Consensus 454 ~A~s~ 458 (478)
T KOG1129|consen 454 AAKSV 458 (478)
T ss_pred Hhhhh
Confidence 87653
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.7e-08 Score=133.11 Aligned_cols=190 Identities=12% Similarity=0.061 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 000176 1716 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK 1795 (1924)
Q Consensus 1716 lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~ 1795 (1924)
+|.++++.+.+.| ..++|.++|++..+ ++...|..++..|.+.|+.++|.++|++|......+...|......+.+
T Consensus 426 ~~n~Li~~y~k~g--~~~~A~~vf~~m~~--~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~ 501 (857)
T PLN03077 426 VANALIEMYSKCK--CIDKALEVFHNIPE--KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACAR 501 (857)
T ss_pred HHHHHHHHHHHcC--CHHHHHHHHHhCCC--CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhh
Confidence 3444444444444 33444444444321 1223444444444444444445554444444333333333333333333
Q ss_pred c-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 000176 1796 Q-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGL 1874 (1924)
Q Consensus 1796 ~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~l 1874 (1924)
. ..+.+++++..+++.--.. ...++..+..+|.+.|+++.|+.+|+.. +.+...|+.++..+.++|+.++|..+
T Consensus 502 ~g~l~~~~~i~~~~~~~g~~~-~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~l 576 (857)
T PLN03077 502 IGALMCGKEIHAHVLRTGIGF-DGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVEL 576 (857)
T ss_pred hchHHHhHHHHHHHHHhCCCc-cceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHH
Confidence 3 3333333333333221111 0122233334455555555555555553 33445566666655566666666666
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1875 FERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916 (1924)
Q Consensus 1875 feral~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAl 1916 (1924)
|++.......|+.. .|...+......|..+++..+|+.+.
T Consensus 577 f~~M~~~g~~Pd~~--T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 577 FNRMVESGVNPDEV--TFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred HHHHHHcCCCCCcc--cHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 66555544444433 34444444444555555555555544
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.6e-07 Score=130.93 Aligned_cols=246 Identities=12% Similarity=0.066 Sum_probs=172.0
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1736 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~ 1736 (1924)
..+|...|++++...+-+...|...+..+.+.|.++.+++++..+++.-- ..+ ..+.-++++++.+.| +.+.|.
T Consensus 471 ~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~-~~~---~~~~naLi~~y~k~G--~~~~A~ 544 (857)
T PLN03077 471 CFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI-GFD---GFLPNALLDLYVRCG--RMNYAW 544 (857)
T ss_pred HHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC-Ccc---ceechHHHHHHHHcC--CHHHHH
Confidence 45566666666544444455566666666666666666666666664321 111 124456777777788 568888
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC
Q 000176 1737 KVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK-FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1814 (1924)
Q Consensus 1737 ~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~-~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~ 1814 (1924)
.+|++. .++...|..++..|.+.|+.++|.++|++|... ...+...|..+...+.+. ..++|.++|+++....+-
T Consensus 545 ~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi 621 (857)
T PLN03077 545 NQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI 621 (857)
T ss_pred HHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC
Confidence 888876 455678888888888888888888888888764 234555566666666666 888888888888865544
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000176 1815 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1894 (1924)
Q Consensus 1815 ~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~ 1894 (1924)
......|..+..++.+.|++++|..+|+.. ...|+ ..+|..++..+..+++.+.++...++++. +.|.+. ..|..
T Consensus 622 ~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~-~~y~l 696 (857)
T PLN03077 622 TPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSV-GYYIL 696 (857)
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCc-chHHH
Confidence 444577888888888888888888888875 23333 56788888888788888888888888887 677666 56666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 000176 1895 YLEYEKSVGEEERIEYVKQKAM 1916 (1924)
Q Consensus 1895 yl~~E~~~G~~~~~~~v~~rAl 1916 (1924)
........|+.+++.++.....
T Consensus 697 l~n~ya~~g~~~~a~~vr~~M~ 718 (857)
T PLN03077 697 LCNLYADAGKWDEVARVRKTMR 718 (857)
T ss_pred HHHHHHHCCChHHHHHHHHHHH
Confidence 6677777888888887776654
|
|
| >cd05687 S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.8e-09 Score=98.46 Aligned_cols=70 Identities=27% Similarity=0.334 Sum_probs=67.4
Q ss_pred CCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEee
Q 000176 1368 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1437 (1924)
Q Consensus 1368 G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk 1437 (1924)
|++|.|+|.++.++|+||+|+.+.+|++|++++++.+..++.+.|++||.++++|+++|++++++.||+|
T Consensus 1 G~iv~g~V~~i~~~~~~v~l~~~~~g~l~~~e~~~~~~~~~~~~~~~Gd~i~~~i~~~~~~~~~i~lS~~ 70 (70)
T cd05687 1 GDIVKGTVVSVDDDEVLVDIGYKSEGIIPISEFSDDPIENGEDEVKVGDEVEVYVLRVEDEEGNVVLSKR 70 (70)
T ss_pred CCEEEEEEEEEeCCEEEEEeCCCceEEEEHHHhCccccCCHhHcCCCCCEEEEEEEEEECCCCeEEEEeC
Confidence 7899999999999999999998999999999999999999999999999999999999988999999985
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 1 of the Escherichia coli and Homo sapiens RPS1 (ec1 and hs1, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. |
| >cd05685 S1_Tex S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.6e-09 Score=98.86 Aligned_cols=68 Identities=31% Similarity=0.603 Sum_probs=64.1
Q ss_pred CcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEe
Q 000176 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1526 (1924)
Q Consensus 1458 G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~ls 1526 (1924)
|+++.|+|+++.++|+||++.+ +..|+||.+++++.++.++.+.|++||.|+|+|+++|++++++.||
T Consensus 1 g~~~~g~V~~i~~~G~fv~l~~-~~~g~~~~~~l~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls 68 (68)
T cd05685 1 GMVLEGVVTNVTDFGAFVDIGV-KQDGLIHISKMADRFVSHPSDVVSVGDIVEVKVISIDEERGRISLS 68 (68)
T ss_pred CCEEEEEEEEEecccEEEEcCC-CCEEEEEHHHCCCccccCHHHhcCCCCEEEEEEEEEECCCCEEecC
Confidence 7899999999999999999976 7999999999999988888889999999999999999999999876
|
The tex gene is essential in Bortella pertusis and is named for its role in toxin expression. Tex has two functional domains, an N-terminal domain homologous to the Escherichia coli maltose repression protein, which is a poorly defined transcriptional factor, and a C-terminal S1 RNA-binding domain. Tex is found in prokaryotes, eukaryotes, and archaea. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.3e-08 Score=111.74 Aligned_cols=215 Identities=13% Similarity=0.119 Sum_probs=183.2
Q ss_pred CchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHH
Q 000176 1658 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1737 (1924)
Q Consensus 1658 p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~ 1737 (1924)
-++...|+..|...|. ++.+.-+...|.+..+.+.|..+|...+...|+. ..+......++...++ .+.|.+
T Consensus 240 r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~-----VT~l~g~ARi~eam~~--~~~a~~ 311 (478)
T KOG1129|consen 240 RRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFD-----VTYLLGQARIHEAMEQ--QEDALQ 311 (478)
T ss_pred hhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCch-----hhhhhhhHHHHHHHHh--HHHHHH
Confidence 3455566666665554 6677778888899999999999999999999963 2345556667777774 489999
Q ss_pred HHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC-
Q 000176 1738 VFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR- 1814 (1924)
Q Consensus 1738 vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~- 1814 (1924)
+|+++++..+.+ +.-...+.-|.-.++.+-|...|.+++.---.++.++.+.+...+.. ++|-+...|+||+....+
T Consensus 312 lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~ 391 (478)
T KOG1129|consen 312 LYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQP 391 (478)
T ss_pred HHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCc
Confidence 999999998875 55555556667789999999999999998889999999999999988 999999999999987642
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1815 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1815 ~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
....++|++++......||..-|...|+-+|.++|++...++.++-++.+.|+++.||.++.-|-+
T Consensus 392 ~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 392 GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred chhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 234689999999999999999999999999999999999999999999999999999999999887
|
|
| >PRK08059 general stress protein 13; Validated | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.4e-09 Score=107.76 Aligned_cols=81 Identities=20% Similarity=0.419 Sum_probs=76.1
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeeccccc
Q 000176 1363 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1442 (1924)
Q Consensus 1363 ~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~ 1442 (1924)
.++++|+++.|.|.++.++|+||.++.+++|++|++++++.++.++.+.|++||.|.|+|+++|++++++.||+|....+
T Consensus 3 ~~~k~G~iv~G~V~~i~~~G~fV~i~~~~~Gli~~sel~~~~~~~~~~~~~vGD~I~vkI~~id~~~~~i~lslk~~~~~ 82 (123)
T PRK08059 3 SQYEVGSVVTGKVTGIQPYGAFVALDEETQGLVHISEITHGFVKDIHDFLSVGDEVKVKVLSVDEEKGKISLSIRATEEA 82 (123)
T ss_pred ccCCCCCEEEEEEEEEecceEEEEECCCCEEEEEHHHCCcccccCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEEcccC
Confidence 45889999999999999999999999999999999999999998888899999999999999999999999999998765
Q ss_pred c
Q 000176 1443 T 1443 (1924)
Q Consensus 1443 ~ 1443 (1924)
|
T Consensus 83 ~ 83 (123)
T PRK08059 83 P 83 (123)
T ss_pred c
Confidence 4
|
|
| >PRK05807 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.3e-09 Score=109.16 Aligned_cols=74 Identities=23% Similarity=0.399 Sum_probs=70.3
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeeccc
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~ 1440 (1924)
+++|++|.|.|+.++++|+||.| .+..|+||++++++.|+.++...|++||.|+++|+++|. +++|.||+|...
T Consensus 3 ~~vG~vv~G~Vt~i~~~GafV~L-~~~~Glvhiseis~~~v~~~~~~~kvGd~V~VkV~~id~-~gkI~LSlk~~~ 76 (136)
T PRK05807 3 LKAGSILEGTVVNITNFGAFVEV-EGKTGLVHISEVADTYVKDIREHLKEQDKVKVKVISIDD-NGKISLSIKQAM 76 (136)
T ss_pred ccCCCEEEEEEEEEECCeEEEEE-CCEEEEEEhhhcccccccCccccCCCCCEEEEEEEEECC-CCcEEEEEEecc
Confidence 67899999999999999999999 578999999999999999999999999999999999997 799999999865
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.2e-07 Score=109.30 Aligned_cols=229 Identities=14% Similarity=0.107 Sum_probs=184.8
Q ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA-DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~-e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
+..++|...++++|..+|++..+|.....++..++ .+++|...++++++..|.. ..+|.....+....+....+
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn-----yqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN-----YQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc-----hHHhHHHHHHHHHcCchhhH
Confidence 44889999999999999999999999988888888 6899999999999876643 35788766666666631126
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc--------CHHHHHHH
Q 000176 1734 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ--------QQEGVQAV 1804 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~--------~~~~A~~l 1804 (1924)
++.+.+++|++.+|.+ .+|...+.++...+++++|++.++++++..+.+..+|...+..+... ..+++.+.
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 6788999999999875 99999999999999999999999999999999999999888665432 23577888
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------------
Q 000176 1805 VQRALLSLPRHKHIKFISQTAILEFKN----GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG-------------- 1866 (1924)
Q Consensus 1805 ~~ral~~~p~~~~~~~~~~~A~le~~~----g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~g-------------- 1866 (1924)
..++|...|.+. .+|..+..++... +...+|...+.+++...|++..+...+++++....
T Consensus 206 ~~~aI~~~P~N~--SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~ 283 (320)
T PLN02789 206 TIDAILANPRNE--SPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLA 283 (320)
T ss_pred HHHHHHhCCCCc--CHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccc
Confidence 889999999885 7998888888773 45577999999999999999999888888887532
Q ss_pred ----CHHHHHHHHHHHHhcCCCchhHHHHHH
Q 000176 1867 ----DVDLIRGLFERAISLSLPPKKMKFLFK 1893 (1924)
Q Consensus 1867 ----d~~~ar~lferal~~~~~pk~~k~lw~ 1893 (1924)
..++|..+++.+ . +..|=+. -+|.
T Consensus 284 ~~~~~~~~a~~~~~~l-~-~~d~ir~-~yw~ 311 (320)
T PLN02789 284 EELSDSTLAQAVCSEL-E-VADPMRR-NYWA 311 (320)
T ss_pred cccccHHHHHHHHHHH-H-hhCcHHH-HHHH
Confidence 236688888876 3 3555444 2444
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.4e-07 Score=115.39 Aligned_cols=230 Identities=18% Similarity=0.126 Sum_probs=184.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHH
Q 000176 1680 KYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGL 1758 (1924)
Q Consensus 1680 ~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i 1758 (1924)
.-+.-+++.|++-+|.-+||.|++.-|. ....|..+.-.....+ .+..|...++||++..|.+ ++.++|+--
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqdP~-----haeAW~~LG~~qaENE--~E~~ai~AL~rcl~LdP~NleaLmaLAVS 362 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQDPQ-----HAEAWQKLGITQAENE--NEQNAISALRRCLELDPTNLEALMALAVS 362 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhChH-----HHHHHHHhhhHhhhcc--chHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 3445567889999999999999998774 3468988877766667 5688999999999999986 999999999
Q ss_pred HHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHH----HH-----Hhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1759 YERTEQNKLADELLYKMIKKFKHSCKVWLRRVQ----RL-----LKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1759 ~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~----~l-----~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
|...|--..|..++..-+...+ +..|+..+. +. ... .+....++|-.|-..+|....+++...++-+|
T Consensus 363 ytNeg~q~~Al~~L~~Wi~~~p--~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 363 YTNEGLQNQALKMLDKWIRNKP--KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLY 440 (579)
T ss_pred HhhhhhHHHHHHHHHHHHHhCc--cchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence 9999999999999888765431 222332220 00 111 45666778888888888755679999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1908 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~ 1908 (1924)
+-.|+++||...|+.||+..|.+.-+|+.|+..+......+.|...|.||+. +.|.-. ..|....--.+..|.+++|
T Consensus 441 ~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yV-R~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYV-RVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred hcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCee-eeehhhhhhhhhhhhHHHH
Confidence 9999999999999999999999999999999999888899999999999999 888766 3444444456668999999
Q ss_pred HHHHHHHHHHHHh
Q 000176 1909 EYVKQKAMEYVES 1921 (1924)
Q Consensus 1909 ~~v~~rAle~v~~ 1921 (1924)
...|-.|+.+-+.
T Consensus 518 ~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 518 VKHLLEALSMQRK 530 (579)
T ss_pred HHHHHHHHHhhhc
Confidence 9999999887654
|
|
| >cd04465 S1_RPS1_repeat_ec2_hs2 S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.4e-09 Score=94.85 Aligned_cols=67 Identities=27% Similarity=0.477 Sum_probs=61.5
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeec
Q 000176 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831 (1924)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk 831 (1924)
|+.+.|.|.++.++|+||+| +++.||+|.+++++.+..++.. .+||.+.|+|+++|.+++++.||.|
T Consensus 1 G~iv~g~V~~v~~~G~~v~l-~g~~gfip~s~~~~~~~~~~~~--~vG~~i~~~i~~vd~~~~~i~lS~k 67 (67)
T cd04465 1 GEIVEGKVTEKVKGGLIVDI-EGVRAFLPASQVDLRPVEDLDE--YVGKELKFKIIEIDRERNNIVLSRR 67 (67)
T ss_pred CCEEEEEEEEEECCeEEEEE-CCEEEEEEHHHCCCcccCChHH--hCCCEEEEEEEEEeCCCCEEEEEcC
Confidence 78899999999999999999 8899999999999887776655 4999999999999999999999975
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain.While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 2 of the Escherichia coli and Homo sapiens RPS1 (ec2 and hs2, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. |
| >TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.7e-09 Score=134.01 Aligned_cols=101 Identities=26% Similarity=0.486 Sum_probs=77.9
Q ss_pred EEEeCCCCEEEEEeecccccccchhcccc-cc--ccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccC----ccc
Q 000176 1423 LSVEPLSKRVEVTLKTSDSRTASQSEINN-LS--NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS----EDH 1495 (1924)
Q Consensus 1423 l~vd~e~~ri~LSlk~~~~~~~~~~~~~~-~~--~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels----~~~ 1495 (1924)
++++ +++.|.++-............+.. .. .+++|++|.|+|++|.+||+||+|.+ +++||+|+|||+ +.+
T Consensus 611 Idi~-d~G~V~I~a~d~~~~~~A~~~I~~i~~~~~~~vG~i~~GkV~~I~dfGaFVel~~-G~eGLvHISeisdls~~~r 688 (719)
T TIGR02696 611 ISIE-DDGTVYIGAADGPSAEAARAMINAIANPTMPEVGERFLGTVVKTTAFGAFVSLLP-GKDGLLHISQIRKLAGGKR 688 (719)
T ss_pred EEEe-cCcEEEEEeCCHHHHHHHHHHHHHhhCcCcCCCCCEEEEEEEEEECceEEEEecC-CceEEEEhhhccccccccC
Confidence 4555 467777776543321100011111 12 47999999999999999999999986 899999999996 468
Q ss_pred ccCcccccCCCcEEEEEEEEEecCCCeeEEe
Q 000176 1496 VDNIETIYRAGEKVKVKILKVDKEKRRISLG 1526 (1924)
Q Consensus 1496 ~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~ls 1526 (1924)
+.++.+.|++||.|+|+|++|| +++||+|+
T Consensus 689 v~~~~dv~kvGd~V~VKVl~ID-~~gKI~L~ 718 (719)
T TIGR02696 689 VENVEDVLSVGQKIQVEIADID-DRGKLSLV 718 (719)
T ss_pred cCCHHHcCCCCCEEEEEEEEEC-CCCCeeec
Confidence 8999999999999999999999 58899986
|
Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase. |
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-06 Score=118.20 Aligned_cols=252 Identities=11% Similarity=0.018 Sum_probs=150.2
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
.++..+|.+.|++++..+|+++.++..++..+.+.++.++|.+.++++.+..|... ..++.+.+....+. ..
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~------~~l~layL~~~~~~--~~ 186 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQ------NYMTLSYLNRATDR--NY 186 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchH------HHHHHHHHHHhcch--HH
Confidence 35677999999999999999999999888888999999999999999997766311 12233333322332 23
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHH-------------------------------------------------------
Q 000176 1734 AVVKVFQRALQYCDPK-KVHLALLG------------------------------------------------------- 1757 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~-~i~~~l~~------------------------------------------------------- 1757 (1924)
.|.+.|++++...|.+ +++..+..
T Consensus 187 ~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 187 DALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 4677777777666432 22222211
Q ss_pred ---------------------------------------------------------------------HHHHhCChHHH
Q 000176 1758 ---------------------------------------------------------------------LYERTEQNKLA 1768 (1924)
Q Consensus 1758 ---------------------------------------------------------------------i~~~~gk~e~A 1768 (1924)
.|...++.++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 23344445555
Q ss_pred HHHHHHHHHhcC----CCHHH--HHHHHHHHHhc-CHHHHHHHHHHHHHhCC-------------CCChHHHHHHHHHHH
Q 000176 1769 DELLYKMIKKFK----HSCKV--WLRRVQRLLKQ-QQEGVQAVVQRALLSLP-------------RHKHIKFISQTAILE 1828 (1924)
Q Consensus 1769 ~~~fe~~lk~~~----~~~~v--w~~~a~~l~~~-~~~~A~~l~~ral~~~p-------------~~~~~~~~~~~A~le 1828 (1924)
..+|.+++...+ ....+ ...+.-.++.+ ++++|+.++++..+..| .....+.....|+.+
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 555555544221 11111 12222233444 66666666666665433 112234555556666
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1908 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~ 1908 (1924)
.-.|+...|..+++.++...|.+..+|..+++++...|.+.+|+.+++++.. +.|+.. .+-...+.--...|+...+
T Consensus 427 ~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~-~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSL-ILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccH-HHHHHHHHHHHhhhhHHHH
Confidence 6677777777777777777777777777777777777777777777766666 555544 2222222233334666666
Q ss_pred HHHHHHHH
Q 000176 1909 EYVKQKAM 1916 (1924)
Q Consensus 1909 ~~v~~rAl 1916 (1924)
+.+.+..+
T Consensus 504 ~~~~~~l~ 511 (822)
T PRK14574 504 ELLTDDVI 511 (822)
T ss_pred HHHHHHHH
Confidence 55554443
|
|
| >cd04465 S1_RPS1_repeat_ec2_hs2 S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-08 Score=94.11 Aligned_cols=67 Identities=25% Similarity=0.514 Sum_probs=61.5
Q ss_pred CcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecc
Q 000176 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528 (1924)
Q Consensus 1458 G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK 1528 (1924)
|+++.|+|+++.++|+||++ + ++.||+|.|++++.+..++.. .+||.++++|+++|.++++|.||.|
T Consensus 1 G~iv~g~V~~v~~~G~~v~l-~-g~~gfip~s~~~~~~~~~~~~--~vG~~i~~~i~~vd~~~~~i~lS~k 67 (67)
T cd04465 1 GEIVEGKVTEKVKGGLIVDI-E-GVRAFLPASQVDLRPVEDLDE--YVGKELKFKIIEIDRERNNIVLSRR 67 (67)
T ss_pred CCEEEEEEEEEECCeEEEEE-C-CEEEEEEHHHCCCcccCChHH--hCCCEEEEEEEEEeCCCCEEEEEcC
Confidence 78999999999999999999 5 799999999999988777655 3899999999999999999999975
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain.While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 2 of the Escherichia coli and Homo sapiens RPS1 (ec2 and hs2, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. |
| >cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.2e-09 Score=100.41 Aligned_cols=76 Identities=22% Similarity=0.347 Sum_probs=67.6
Q ss_pred cCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCc----ccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE----DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~----~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
.++|++|.|+|+++.++|+||.|.+ ++.|++|++++++ .+..+..+.|++||.++|+|+++|++ +++.||+|..
T Consensus 4 p~~GdiV~g~V~~i~~~g~~v~i~~-~~~G~l~~se~~~~~~~~~~~~~~~~l~vGd~i~~~V~~~~~~-~~i~LS~~~~ 81 (86)
T cd05789 4 PEVGDVVIGRVTEVGFKRWKVDINS-PYDAVLPLSEVNLPRTDEDELNMRSYLDEGDLIVAEVQSVDSD-GSVSLHTRSL 81 (86)
T ss_pred CCCCCEEEEEEEEECCCEEEEECCC-CeEEEEEHHHccCCCCccchHHHHhhCCCCCEEEEEEEEECCC-CCEEEEeCcc
Confidence 4799999999999999999999976 7999999999996 44566778899999999999999976 9999999885
Q ss_pred cc
Q 000176 1531 YF 1532 (1924)
Q Consensus 1531 ~~ 1532 (1924)
.+
T Consensus 82 ~~ 83 (86)
T cd05789 82 KY 83 (86)
T ss_pred cc
Confidence 43
|
S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure". |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=9e-07 Score=101.01 Aligned_cols=222 Identities=16% Similarity=0.127 Sum_probs=180.9
Q ss_pred HcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHH
Q 000176 1687 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-----KKVHLALLGLYER 1761 (1924)
Q Consensus 1687 ~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~-----~~i~~~l~~i~~~ 1761 (1924)
-..+.|+|.+.|-..++..| +....-+++.||..+-| ..+.|..+-+-.+...+- .-....++.=|..
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~-----~t~e~~ltLGnLfRsRG--EvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDP-----ETFEAHLTLGNLFRSRG--EVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred hhcCcchHHHHHHHHHhcCc-----hhhHHHHHHHHHHHhcc--hHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence 34678999999999997544 34557899999999999 559999888877765543 1567888899999
Q ss_pred hCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChH---HHHHHHHHHHHHcCCHHHH
Q 000176 1762 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI---KFISQTAILEFKNGVADRG 1837 (1924)
Q Consensus 1762 ~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~---~~~~~~A~le~~~g~~e~A 1837 (1924)
+|-++.|.++|..+.....-...+...+..+|-.. ++++|.+.-++..+.-++...+ .++..+|+-+....+.++|
T Consensus 120 aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 99999999999999875444566777788877777 9999999999998888776443 4677788888888899999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1838 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1838 r~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
+.++.++++.+|++..+-..+++++...|+++.|...+++++. -.|.-...+-.+....+...|+.++......++.+
T Consensus 200 ~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e--Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 200 RELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLE--QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 44444444556666666777888887777777765
|
|
| >cd05692 S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-08 Score=95.03 Aligned_cols=69 Identities=30% Similarity=0.518 Sum_probs=65.7
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeec
Q 000176 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831 (1924)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk 831 (1924)
|+++.|.|.+++++|+||++.+++.||+|.+++++.+..++.+.|++||.|+|+|+++|+ ++++.||+|
T Consensus 1 G~~~~g~V~~i~~~g~~v~i~~~~~g~l~~~~l~~~~~~~~~~~~~~Gd~v~v~v~~~~~-~~~i~ls~k 69 (69)
T cd05692 1 GSVVEGTVTRLKPFGAFVELGGGISGLVHISQIAHKRVKDVKDVLKEGDKVKVKVLSIDA-RGRISLSIK 69 (69)
T ss_pred CCEEEEEEEEEEeeeEEEEECCCCEEEEEhHHcCCcccCCHHHccCCCCEEEEEEEEECC-CCcEEEEEC
Confidence 688999999999999999999999999999999998888888999999999999999999 899999986
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (hs4) of the H. sapiens RPS1 homolog. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. |
| >cd05688 S1_RPS1_repeat_ec3 S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-08 Score=94.58 Aligned_cols=68 Identities=40% Similarity=0.756 Sum_probs=63.8
Q ss_pred CCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEe
Q 000176 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1526 (1924)
Q Consensus 1457 ~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~ls 1526 (1924)
+|+++.|+|.++.++|+||+|. ++.|++|.+++++.++.++.+.|++||.|+|+|+++|++++++.||
T Consensus 1 ~g~~~~g~V~~v~~~g~~v~l~--~~~g~l~~~e~~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls 68 (68)
T cd05688 1 EGDVVEGTVKSITDFGAFVDLG--GVDGLLHISDMSWGRVKHPSEVVNVGDEVEVKVLKIDKERKRISLG 68 (68)
T ss_pred CCCEEEEEEEEEEeeeEEEEEC--CeEEEEEhHHCCCccccCHhHEECCCCEEEEEEEEEECCCCEEecC
Confidence 5899999999999999999995 6999999999999888888899999999999999999999999876
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 3 (ec3) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. |
| >COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4e-09 Score=116.87 Aligned_cols=74 Identities=34% Similarity=0.670 Sum_probs=71.2
Q ss_pred CCCcEEEEEEEEeecceEEEEEecC-ceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEeccc
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~~-~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~ 1529 (1924)
.+|++|-|+|++|.+||+||.|+.- |+.||+|+||++..++.++.+..++||.|-|+|+.+|++++.|.||||.
T Consensus 10 eeGEiVv~tV~~V~~~GAyv~L~EY~g~Eg~ihiSEvas~wVknIrd~vkegqkvV~kVlrVd~~rg~IDLSlkr 84 (269)
T COG1093 10 EEGEIVVGTVKQVADYGAYVELDEYPGKEGFIHISEVASGWVKNIRDYVKEGQKVVAKVLRVDPKRGHIDLSLKR 84 (269)
T ss_pred CCCcEEEEEEEEeeccccEEEeeccCCeeeeEEHHHHHHHHHHHHHHHhhcCCeEEEEEEEEcCCCCeEeeehhh
Confidence 5899999999999999999999854 8999999999999999999999999999999999999999999999988
|
|
| >cd05685 S1_Tex S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.8e-09 Score=95.01 Aligned_cols=68 Identities=31% Similarity=0.440 Sum_probs=64.4
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEe
Q 000176 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829 (1924)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lS 829 (1924)
|+.+.|+|++++++|+||++.+++.||+|.+++++.+..++...|++||.|+|+|+++|++++++.||
T Consensus 1 g~~~~g~V~~i~~~G~fv~l~~~~~g~~~~~~l~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls 68 (68)
T cd05685 1 GMVLEGVVTNVTDFGAFVDIGVKQDGLIHISKMADRFVSHPSDVVSVGDIVEVKVISIDEERGRISLS 68 (68)
T ss_pred CCEEEEEEEEEecccEEEEcCCCCEEEEEHHHCCCccccCHHHhcCCCCEEEEEEEEEECCCCEEecC
Confidence 67899999999999999999999999999999998888888889999999999999999999999876
|
The tex gene is essential in Bortella pertusis and is named for its role in toxin expression. Tex has two functional domains, an N-terminal domain homologous to the Escherichia coli maltose repression protein, which is a poorly defined transcriptional factor, and a C-terminal S1 RNA-binding domain. Tex is found in prokaryotes, eukaryotes, and archaea. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.8e-07 Score=112.18 Aligned_cols=247 Identities=16% Similarity=0.189 Sum_probs=180.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHH---HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Q 000176 1672 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL---NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1748 (1924)
Q Consensus 1672 P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl---~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~ 1748 (1924)
|.-...-..++..+..+|++++|...+++|++.+-.+-.-..+ ..-..|..++...+++ .+|..+|++|++....
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~--~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKY--DEAVNLYEEALTIREE 273 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHHHH
Confidence 4444444557888899999999999999999873111000001 1112345566677744 9999999999986431
Q ss_pred ---------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcC-----CCHH---HHHHHHHHHHhc-CHHHHHHHHHHHHH
Q 000176 1749 ---------KKVHLALLGLYERTEQNKLADELLYKMIKKFK-----HSCK---VWLRRVQRLLKQ-QQEGVQAVVQRALL 1810 (1924)
Q Consensus 1749 ---------~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~-----~~~~---vw~~~a~~l~~~-~~~~A~~l~~ral~ 1810 (1924)
-.++..|+.+|...|++.+|...+++++.++. ..+. .....+..+... ++++|..+|+++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 18899999999999999999999999998763 2333 344444444444 99999999999988
Q ss_pred hC---CCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC-C----HHHHHHHHHHHHHcCCHHHHHHHH
Q 000176 1811 SL---PRHKH---IKFISQTAILEFKNGVADRGRSMFEGILSEY----PK-R----TDLWSIYLDQEIRLGDVDLIRGLF 1875 (1924)
Q Consensus 1811 ~~---p~~~~---~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~----Pk-~----~dlw~~y~~le~k~gd~~~ar~lf 1875 (1924)
.. |...| ..++.++|.+++..|++++|+++|++|++.. -+ + ..+|. ++..+.+.+.+..|-.+|
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~-la~~~~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQ-LAEAYEELKKYEEAEQLF 432 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHH-HHHHHHHhcccchHHHHH
Confidence 65 33333 3689999999999999999999999999865 22 2 23454 455667888999999999
Q ss_pred HHHHhc-----CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 000176 1876 ERAISL-----SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1922 (1924)
Q Consensus 1876 eral~~-----~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~~ 1922 (1924)
++++.. ...|.-. ..+..........|+++.|..+-++++.+-+..
T Consensus 433 ~~~~~i~~~~g~~~~~~~-~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~ 483 (508)
T KOG1840|consen 433 EEAKDIMKLCGPDHPDVT-YTYLNLAALYRAQGNYEAAEELEEKVLNAREQR 483 (508)
T ss_pred HHHHHHHHHhCCCCCchH-HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHc
Confidence 998862 1233333 567778888999999999999999988775543
|
|
| >cd04472 S1_PNPase S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-08 Score=94.16 Aligned_cols=68 Identities=38% Similarity=0.747 Sum_probs=63.6
Q ss_pred CcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEec
Q 000176 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527 (1924)
Q Consensus 1458 G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lsl 1527 (1924)
|+++.|+|.++.+||+||+|.+ +..|++|++++++.++.++.+.|++||.|+++|+++|+ .+++.||+
T Consensus 1 g~~~~g~V~~v~~~G~~v~l~~-~~~g~l~~~~l~~~~~~~~~~~~~~Gd~v~v~v~~~d~-~~~i~ls~ 68 (68)
T cd04472 1 GKIYEGKVVKIKDFGAFVEILP-GKDGLVHISELSDERVEKVEDVLKVGDEVKVKVIEVDD-RGRISLSR 68 (68)
T ss_pred CCEEEEEEEEEEEeEEEEEeCC-CCEEEEEhHHcCCccccCHHHccCCCCEEEEEEEEECC-CCcEEeeC
Confidence 7899999999999999999976 79999999999999888888899999999999999998 99999884
|
PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA. This family is classified based on the S1 domain. PNPase nonspecifically removes the 3' nucleotides from mRNA, but is stalled by double-stranded RNA structures such as a stem-loop. Evidence shows that a minimum of 7-10 unpaired nucleotides at the 3' end, is required for PNPase degradation. It is suggested that PNPase also dephosphorylates the RNA 5' end. This additional activity may regulate the 5'-dependent activity of RNaseE in vivo. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.6e-06 Score=110.79 Aligned_cols=230 Identities=14% Similarity=0.125 Sum_probs=164.6
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Q 000176 1669 RSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1748 (1924)
Q Consensus 1669 ~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~ 1748 (1924)
..+|++...|..++....++|.++.||-.|.||++.-|.. ..+...++.|+.+.| +...|.+.|.++++.+|+
T Consensus 201 HL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n-----~~~~~ers~L~~~~G--~~~~Am~~f~~l~~~~p~ 273 (895)
T KOG2076|consen 201 HLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSN-----WELIYERSSLYQKTG--DLKRAMETFLQLLQLDPP 273 (895)
T ss_pred hcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc-----hHHHHHHHHHHHHhC--hHHHHHHHHHHHHhhCCc
Confidence 4578888889888888888888888988888888876642 345557777878888 458888888888888873
Q ss_pred H-------HHHH-----------------------------------HHHHHHHHhCChHHHHHHHHHHHH---------
Q 000176 1749 K-------KVHL-----------------------------------ALLGLYERTEQNKLADELLYKMIK--------- 1777 (1924)
Q Consensus 1749 ~-------~i~~-----------------------------------~l~~i~~~~gk~e~A~~~fe~~lk--------- 1777 (1924)
. .+|. -++.+|....+++.|.......+.
T Consensus 274 ~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e 353 (895)
T KOG2076|consen 274 VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSE 353 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhh
Confidence 1 1111 111233333333333333322222
Q ss_pred ----------------------------------------------------h---cCCCHHHHHHHHHHHHhc-CHHHH
Q 000176 1778 ----------------------------------------------------K---FKHSCKVWLRRVQRLLKQ-QQEGV 1801 (1924)
Q Consensus 1778 ----------------------------------------------------~---~~~~~~vw~~~a~~l~~~-~~~~A 1801 (1924)
. ..+...+++..+..|+.. ++..|
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~A 433 (895)
T KOG2076|consen 354 WDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEA 433 (895)
T ss_pred hhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 0 013355667777777777 88999
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 000176 1802 QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1881 (1924)
Q Consensus 1802 ~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~ 1881 (1924)
..+|..++...+... .-+|...|.+|...|.+++|...|+++|...|.+.|+...++.++.++|++++|-..+++...-
T Consensus 434 l~~l~~i~~~~~~~~-~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~ 512 (895)
T KOG2076|consen 434 LRLLSPITNREGYQN-AFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINP 512 (895)
T ss_pred HHHHHHHhcCccccc-hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCC
Confidence 999999887766554 6799999999999999999999999999999999999999999999999999999999885531
Q ss_pred C-------CCchhHHHHHHHHHHHHHHcCCHHH
Q 000176 1882 S-------LPPKKMKFLFKKYLEYEKSVGEEER 1907 (1924)
Q Consensus 1882 ~-------~~pk~~k~lw~~yl~~E~~~G~~~~ 1907 (1924)
+ -.+..+ .+-..+.+...+.|+.+.
T Consensus 513 D~~~~e~~a~~~e~-ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 513 DGRNAEACAWEPER-RILAHRCDILFQVGKREE 544 (895)
T ss_pred CccchhhccccHHH-HHHHHHHHHHHHhhhHHH
Confidence 1 122333 345666677777787765
|
|
| >cd04471 S1_RNase_R S1_RNase_R: RNase R C-terminal S1 domain | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.8e-08 Score=97.44 Aligned_cols=71 Identities=38% Similarity=0.743 Sum_probs=62.6
Q ss_pred CCcEEEEEEEEeecceEEEEEecCceeEEeeccccCccccc-----------CcccccCCCcEEEEEEEEEecCCCeeEE
Q 000176 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-----------NIETIYRAGEKVKVKILKVDKEKRRISL 1525 (1924)
Q Consensus 1457 ~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~-----------~~~~~~~~Gd~Vk~~Vl~id~e~~ri~l 1525 (1924)
+|+++.|+|++|.++|+||+|.+.+++|++|.+++++++.. .....|++||.|+++|+++|.++++|.|
T Consensus 1 ~g~~~~g~V~~v~~~G~fv~l~~~~~~G~v~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~gd~v~v~v~~vd~~~~~i~~ 80 (83)
T cd04471 1 VGEEFDGVISGVTSFGLFVELDNLTVEGLVHVSTLGDDYYEFDEENHALVGERTGKVFRLGDKVKVRVVRVDLDRRKIDF 80 (83)
T ss_pred CCCEEEEEEEeEEeeeEEEEecCCCEEEEEEEEecCCCcEEEcccceEEEeccCCCEEcCCCEEEEEEEEeccccCEEEE
Confidence 48999999999999999999986579999999999876422 3457899999999999999999999999
Q ss_pred ec
Q 000176 1526 GM 1527 (1924)
Q Consensus 1526 sl 1527 (1924)
++
T Consensus 81 ~l 82 (83)
T cd04471 81 EL 82 (83)
T ss_pred EE
Confidence 86
|
RNase R is a processive 3' to 5' exoribonuclease, which is a homolog of RNase II. RNase R degrades RNA with secondary structure having a 3' overhang of at least 7 nucleotides. RNase R and PNPase play an important role in the degradation of RNA with extensive secondary structure, such as rRNA, tRNA, and certain mRNA which contains repetitive extragenic palindromic sequences. The C-terminal S1 domain binds ssRNA. |
| >PLN00207 polyribonucleotide nucleotidyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.8e-09 Score=135.48 Aligned_cols=79 Identities=32% Similarity=0.582 Sum_probs=72.5
Q ss_pred ccccCCCcEEE-EEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1452 LSNLHVGDIVI-GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1452 ~~~l~~G~~v~-G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
+.+.++|+++. |+|++|.+||+||+|.+ +++||||+|+|+|+++.++.+.|++||.|+|+|+++|. ++||.||+|..
T Consensus 748 ~~~~~vG~iy~~g~V~~I~~FGaFVeL~~-g~EGLVHISeLs~~rv~~~~dv~kvGD~V~VkVi~ID~-~grI~LSlK~l 825 (891)
T PLN00207 748 TMVPTVGDIYRNCEIKSIAPYGAFVEIAP-GREGLCHISELSSNWLAKPEDAFKVGDRIDVKLIEVND-KGQLRLSRRAL 825 (891)
T ss_pred hcCcCCCcEEECcEEEEEeccEEEEEeCC-CCEEEEEhhhcCCccccCHHHhcCCCCEEEEEEEEECC-CCcEEEEEecc
Confidence 34678999995 69999999999999987 79999999999999999999999999999999999996 89999999986
Q ss_pred cc
Q 000176 1531 YF 1532 (1924)
Q Consensus 1531 ~~ 1532 (1924)
..
T Consensus 826 ~~ 827 (891)
T PLN00207 826 LP 827 (891)
T ss_pred cc
Confidence 33
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.9e-07 Score=106.01 Aligned_cols=188 Identities=11% Similarity=-0.005 Sum_probs=143.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-
Q 000176 1671 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK- 1749 (1924)
Q Consensus 1671 ~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~- 1749 (1924)
++.....|+..+..+++.++++.|...+++++...|.... ....|......+...+ +.+.|...|+++++..|..
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~--~~~a~~~la~~~~~~~--~~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY--AEQAQLDLAYAYYKSG--DYAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh--HHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHCcCCC
Confidence 3567778888888888999999999999999887764321 1235777777777778 4588999999999888753
Q ss_pred ---HHHHHHHHHHHHh--------CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCChH
Q 000176 1750 ---KVHLALLGLYERT--------EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHI 1818 (1924)
Q Consensus 1750 ---~i~~~l~~i~~~~--------gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~~~~~A~~l~~ral~~~p~~~~~ 1818 (1924)
..|+.++.++.+. +++++|.+.|++++..+|.+...|..+..... +...+ .
T Consensus 105 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~------~~~~~------------~ 166 (235)
T TIGR03302 105 DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY------LRNRL------------A 166 (235)
T ss_pred chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH------HHHHH------------H
Confidence 3577777777665 77889999999999998888776654433211 11100 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1819 KFISQTAILEFKNGVADRGRSMFEGILSEYPKR---TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1819 ~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~---~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
......|.+++..|++++|...|++++..+|+. ..+|...+..+.+.|++++|..+|+.+..
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 223467888999999999999999999998864 46899999999999999999999888765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.3e-07 Score=101.52 Aligned_cols=124 Identities=11% Similarity=-0.027 Sum_probs=111.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC
Q 000176 1736 VKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1814 (1924)
Q Consensus 1736 ~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~ 1814 (1924)
+..|++|++..|.. |..++..+.+.|++++|...|++++...|.+..+|..++..+... ++++|...|++++...|.
T Consensus 13 ~~~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 13 EDILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 56899999998864 677888999999999999999999999999999999999999999 999999999999999988
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000176 1815 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1863 (1924)
Q Consensus 1815 ~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~ 1863 (1924)
+ ...|..+|..+...|++++|+..|++++...|++...|........
T Consensus 91 ~--~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 91 H--PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred C--cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 7 4899999999999999999999999999999999999877665543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.3e-07 Score=121.08 Aligned_cols=135 Identities=12% Similarity=0.121 Sum_probs=128.8
Q ss_pred cCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHH
Q 000176 1745 YCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQ 1823 (1924)
Q Consensus 1745 ~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~ 1823 (1924)
|...-..+..++.+..+.|.+++|..++++++...|++..+|..++..+.+. ++++|...+++++...|.+ ......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~--~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS--AREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC--HHHHHH
Confidence 3344589999999999999999999999999999999999999999999999 9999999999999999988 589999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 000176 1824 TAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1881 (1924)
Q Consensus 1824 ~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~ 1881 (1924)
+|..+.+.|++++|..+|+++++..|+...+|..|+..+...|+.+.|...|++|+..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999984
|
|
| >cd05684 S1_DHX8_helicase S1_DHX8_helicase: The N-terminal S1 domain of human ATP-dependent RNA helicase DHX8, a DEAH (Asp-Glu-Ala-His) box polypeptide | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.3e-08 Score=94.45 Aligned_cols=72 Identities=25% Similarity=0.423 Sum_probs=66.8
Q ss_pred CCEEEEEEEEEeeceEEEEeC---CCcEEEEECccCCCccc-CCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecccc
Q 000176 1368 NMIVQGYVKNVTSKGCFIMLS---RKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441 (1924)
Q Consensus 1368 G~~v~G~V~~v~~~G~fV~l~---~~v~g~v~~selsd~~~-~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~ 1441 (1924)
|+++.|.|+++.++|+||+|+ .+++|++|+++++|.+. .++.+.|++||.|+++|+++| ++++.+|+|....
T Consensus 1 G~~~~g~V~~v~~~G~fv~l~~~~~~~~gll~~s~l~~~~~~~~~~~~~~~Gd~v~v~v~~vd--~~~i~~s~k~~~~ 76 (79)
T cd05684 1 GKIYKGKVTSIMDFGCFVQLEGLKGRKEGLVHISQLSFEGRVANPSDVVKRGQKVKVKVISIQ--NGKISLSMKDVDQ 76 (79)
T ss_pred CCEEEEEEEEEEeeeEEEEEeCCCCCcEEEEEhHhccCCCCcCChhheeCCCCEEEEEEEEEe--CCEEEEEEEeccc
Confidence 789999999999999999998 46999999999999986 889899999999999999999 8999999998654
|
The DEAH-box RNA helicases are thought to play key roles in pre-mRNA splicing and DHX8 facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome. DHX8 is also known as HRH1 (human RNA helicase 1) in Homo sapiens and PRP22 in Saccharomyces cerevisiae. |
| >PRK03987 translation initiation factor IF-2 subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.6e-08 Score=117.47 Aligned_cols=75 Identities=33% Similarity=0.640 Sum_probs=70.9
Q ss_pred cCCCcEEEEEEEEeecceEEEEEecC-ceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEeccc
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~~~-~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~ 1529 (1924)
.++|++|.|+|++|.+||+||+|.+. ++.||+|+|++++.++.++.+.|++||.|.|+|+++|+++++|.||+|.
T Consensus 6 P~~GdiV~G~V~~I~~~G~fV~L~e~~gieGlI~iSEls~~~i~~i~~~~kvGd~V~vkVi~VD~~k~~I~LSlK~ 81 (262)
T PRK03987 6 PEEGELVVGTVKEVKDFGAFVTLDEYPGKEGFIHISEVASGWVKNIRDHVKEGQKVVCKVIRVDPRKGHIDLSLKR 81 (262)
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCCCCcEEEEEHHHcCcccccCHHHhCCCCCEEEEEEEEEecccCeEEEEEEe
Confidence 36899999999999999999999753 7999999999999999999999999999999999999999999999987
|
|
| >smart00316 S1 Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.8e-08 Score=92.77 Aligned_cols=72 Identities=42% Similarity=0.753 Sum_probs=67.2
Q ss_pred CCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecc
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK 1528 (1924)
++|+++.|+|.++.++|+||++.+ ++.|++|.+++++.+..++...|++||.|+++|++++++++++.||++
T Consensus 1 ~~G~~v~g~V~~v~~~g~~v~i~~-~~~g~l~~~~~~~~~~~~~~~~~~~G~~v~~~V~~~~~~~~~i~ls~~ 72 (72)
T smart00316 1 EVGDVVEGTVTEITPFGAFVDLGN-GVEGLIPISELSDKRVKDPEEVLKVGDEVKVKVLSVDEEKGRIILSLK 72 (72)
T ss_pred CCCCEEEEEEEEEEccEEEEEeCC-CCEEEEEHHHCCccccCCHHHeecCCCEEEEEEEEEeCCCCEEEEEeC
Confidence 369999999999999999999976 799999999999988888888999999999999999999999999875
|
|
| >cd04453 S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.6e-08 Score=96.55 Aligned_cols=74 Identities=20% Similarity=0.383 Sum_probs=65.0
Q ss_pred ccCCCcEEEEEEEEeecc--eEEEEEecCceeEEeeccccCc---ccccCcccccCCCcEEEEEEEEEecCCCeeEEecc
Q 000176 1454 NLHVGDIVIGQIKRVESY--GLFITIENTNLVGLCHVSELSE---DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~--GvFV~l~~~~v~gl~h~sels~---~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK 1528 (1924)
.+++|+++.|+|+++.+| |+||+|.+ +.+||+|+||++| .++.++.+.+++||.|.|+|++.....+...|+.+
T Consensus 4 ~~~~G~iy~g~V~~i~~~~~GaFV~l~~-g~~Gllh~seis~~~~~~v~~~~~~~~~Gd~v~VqV~~~~~~~K~~~lt~~ 82 (88)
T cd04453 4 EPIVGNIYLGRVKKIVPGLQAAFVDIGL-GKNGFLHLSDILPAYFKKHKKIAKLLKEGQEILVQVVKEPIGTKGPRLTTN 82 (88)
T ss_pred cCCCCCEEEEEEEEeccCCcEEEEEeCC-CCEEEEEhHHcCchhccccCCHHHcCCCCCEEEEEEEEecCCCCCceEEEE
Confidence 567999999999999997 99999986 7999999999999 66778889999999999999998776666666554
|
RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and the maturation of tRNA, 10Sa RNA and the M1 precursor of RNase P. RNase E associates with PNPase (3' to 5' exonuclease), Rhl B (DEAD-box RNA helicase) and enolase (glycolytic enzyme) to form the RNA degradosome. RNase E tends to cut mRNA within single-stranded regions that are rich in A/U nucleotides. The N-terminal region of RNase E contains the catalytic site. Within the conserved N-terminal domain of RNAse E and RNase G, there is an S1-like subdomain, which is an ancient single-stranded RNA-binding domain. S1 domain is an RNA-binding module originally identified in the ribosomal protein S1. The S1 domain is required for RNA cleavage by RNase E. RNase G is paralogous to RNase E with an N-terminal catalytic domain th |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-06 Score=102.05 Aligned_cols=259 Identities=14% Similarity=0.079 Sum_probs=187.7
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhC-CCCHHHHHHHHHHH-HHcC-CHHHHHHHHHHHHHhcCCcchhhHHHHHHH
Q 000176 1643 QEIRAAEERLLEKDAPRTPDEFERLVRSS-PNSSFVWIKYMAFM-LSMA-DVEKARSIAERALQTINIREENEKLNIWVA 1719 (1924)
Q Consensus 1643 ~~~~~~e~~~~~~~~p~a~~~ferll~~~-P~s~~~W~~y~~~~-~~~~-e~dkAr~v~eraL~~i~~~ee~ekl~lWia 1719 (1924)
.++...-+-+-+++.+.+++.+.-+-..+ ...+.+-.++...+ +|-| ++..|...++.|+...-+... ....
T Consensus 421 lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~-----a~~n 495 (840)
T KOG2003|consen 421 LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAA-----ALTN 495 (840)
T ss_pred hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHH-----Hhhc
Confidence 34444444444566666666554333222 22233333444333 4444 788888888888864443221 1111
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-C
Q 000176 1720 YFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q 1797 (1924)
Q Consensus 1720 yl~le~~~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~ 1797 (1924)
-.|.....| +.++|.+.|++|+..... .+..+..+..++..|+.++|++.|-++-.....+..+.+..+.+|.-. +
T Consensus 496 kgn~~f~ng--d~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led 573 (840)
T KOG2003|consen 496 KGNIAFANG--DLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLED 573 (840)
T ss_pred CCceeeecC--cHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhC
Confidence 222333446 669999999999876544 377788888889999999999999988887778999999999998888 9
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000176 1798 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1877 (1924)
Q Consensus 1798 ~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lfer 1877 (1924)
...|.++|-++....|.+ +.+++++|.+|-+.|+-.+|...+=..-+.+|-+......++.+|+...-.+++...||+
T Consensus 574 ~aqaie~~~q~~slip~d--p~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ek 651 (840)
T KOG2003|consen 574 PAQAIELLMQANSLIPND--PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEK 651 (840)
T ss_pred HHHHHHHHHHhcccCCCC--HHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999887 589999999999999999998888888888898888766566777777778889999999
Q ss_pred HHhcCCCchhHHHHHHHHHH-HHHHcCCHHHHHHHHHH
Q 000176 1878 AISLSLPPKKMKFLFKKYLE-YEKSVGEEERIEYVKQK 1914 (1924)
Q Consensus 1878 al~~~~~pk~~k~lw~~yl~-~E~~~G~~~~~~~v~~r 1914 (1924)
|-- +.|...+ |...+. ..++.|+++.+..+|..
T Consensus 652 aal--iqp~~~k--wqlmiasc~rrsgnyqka~d~yk~ 685 (840)
T KOG2003|consen 652 AAL--IQPNQSK--WQLMIASCFRRSGNYQKAFDLYKD 685 (840)
T ss_pred HHh--cCccHHH--HHHHHHHHHHhcccHHHHHHHHHH
Confidence 887 7777775 766654 46778898888877754
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.73 E-value=9e-07 Score=103.75 Aligned_cols=164 Identities=11% Similarity=0.044 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChH-HHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSC---KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI-KFISQT 1824 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~---~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~-~~~~~~ 1824 (1924)
..++.++..+...++++.|...|++++..+|.++ ..|+..+..+... ++++|...|++++...|.+... .+|...
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~ 113 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLR 113 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHH
Confidence 6788888888888899999999998888887664 5788888888888 8999999999999888876532 357777
Q ss_pred HHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHH-----------------HHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1825 AILEFKN--------GVADRGRSMFEGILSEYPKRTDLWS-----------------IYLDQEIRLGDVDLIRGLFERAI 1879 (1924)
Q Consensus 1825 A~le~~~--------g~~e~Ar~lfe~aL~~~Pk~~dlw~-----------------~y~~le~k~gd~~~ar~lferal 1879 (1924)
|..++.. |+++.|...|++++..+|++...|. ..++++++.|++..|...|++++
T Consensus 114 g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al 193 (235)
T TIGR03302 114 GLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVV 193 (235)
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 7777765 7788899999999999988765542 34677888999999999999999
Q ss_pred hcCCCch---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1880 SLSLPPK---KMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916 (1924)
Q Consensus 1880 ~~~~~pk---~~k~lw~~yl~~E~~~G~~~~~~~v~~rAl 1916 (1924)
. ..|+ .. ..|..........|+.+++..+++...
T Consensus 194 ~--~~p~~~~~~-~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 194 E--NYPDTPATE-EALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred H--HCCCCcchH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8 3332 23 567778888888999999888776543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >cd04472 S1_PNPase S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.6e-08 Score=91.26 Aligned_cols=68 Identities=28% Similarity=0.468 Sum_probs=64.2
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEee
Q 000176 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830 (1924)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSl 830 (1924)
|+++.|.|.+++++|+||++.++..||+|.+++++.+...+...|++||.|.|+|+++|+ ++++.||+
T Consensus 1 g~~~~g~V~~v~~~G~~v~l~~~~~g~l~~~~l~~~~~~~~~~~~~~Gd~v~v~v~~~d~-~~~i~ls~ 68 (68)
T cd04472 1 GKIYEGKVVKIKDFGAFVEILPGKDGLVHISELSDERVEKVEDVLKVGDEVKVKVIEVDD-RGRISLSR 68 (68)
T ss_pred CCEEEEEEEEEEEeEEEEEeCCCCEEEEEhHHcCCccccCHHHccCCCCEEEEEEEEECC-CCcEEeeC
Confidence 678999999999999999999999999999999988888888899999999999999999 99999985
|
PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA. This family is classified based on the S1 domain. PNPase nonspecifically removes the 3' nucleotides from mRNA, but is stalled by double-stranded RNA structures such as a stem-loop. Evidence shows that a minimum of 7-10 unpaired nucleotides at the 3' end, is required for PNPase degradation. It is suggested that PNPase also dephosphorylates the RNA 5' end. This additional activity may regulate the 5'-dependent activity of RNaseE in vivo. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.1e-07 Score=114.55 Aligned_cols=214 Identities=14% Similarity=0.101 Sum_probs=143.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000176 1679 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGL 1758 (1924)
Q Consensus 1679 ~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i 1758 (1924)
..|+..+++.|-...|..+|+|.- .|-..+..+...| +..+|..+..+-++..|....|..++++
T Consensus 402 ~~laell~slGitksAl~I~Erle-------------mw~~vi~CY~~lg--~~~kaeei~~q~lek~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE-------------MWDPVILCYLLLG--QHGKAEEINRQELEKDPDPRLYCLLGDV 466 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH-------------HHHHHHHHHHHhc--ccchHHHHHHHHhcCCCcchhHHHhhhh
Confidence 567777777777777777766543 6777777777777 4577777777777744444666667776
Q ss_pred HHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHH
Q 000176 1759 YERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1837 (1924)
Q Consensus 1759 ~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~A 1837 (1924)
..+..-|++|.++++..-.+ +...++...+.+ +++++...|++++..+|-. +..|+.++....+.+++..|
T Consensus 467 ~~d~s~yEkawElsn~~sar------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq--~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR------AQRSLALLILSNKDFSEADKHLERSLEINPLQ--LGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH------HHHhhccccccchhHHHHHHHHHHHhhcCccc--hhHHHhccHHHHHHhhhHHH
Confidence 65555555555555443322 333344444445 7777777777777777666 46777777777777777777
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1838 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1838 r~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
...|-+++...|++...|+.+.-.+++.++..+|+..+.+|+. ...+.. .+|..|+-.-.+.|.++.|..+|.|-++
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK--cn~~~w-~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK--CNYQHW-QIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh--cCCCCC-eeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777776 443333 4677777777777777777777776655
Q ss_pred H
Q 000176 1918 Y 1918 (1924)
Q Consensus 1918 ~ 1918 (1924)
.
T Consensus 616 ~ 616 (777)
T KOG1128|consen 616 L 616 (777)
T ss_pred h
Confidence 4
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.2e-07 Score=110.51 Aligned_cols=186 Identities=11% Similarity=-0.036 Sum_probs=96.4
Q ss_pred CCchHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHH---HHHHHHHHcCCC
Q 000176 1657 APRTPDEFERLVRSSPNS---SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV---AYFNLENEYGNP 1730 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s---~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWi---ayl~le~~~g~~ 1730 (1924)
.+.+...|.+.....|.+ ...+.-.+..+...+++++|...+++++...|... ..|. .|..+....+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~-----~a~~~~~~~~~~~~~~~-- 94 (355)
T cd05804 22 RPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL-----LALKLHLGAFGLGDFSG-- 94 (355)
T ss_pred cchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-----HHHHHhHHHHHhccccc--
Confidence 444455666655554432 33444445555566666666666666666555322 1222 1222211122
Q ss_pred CHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHH
Q 000176 1731 PEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRA 1808 (1924)
Q Consensus 1731 ~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ra 1808 (1924)
....+.+.++.+....+.. ..+..++.++...|++++|...|++++...|.+..+|..++..+... ++++|...|+++
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~ 174 (355)
T cd05804 95 MRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESW 174 (355)
T ss_pred CchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 1233333333311222221 33334455666666666666666666666666666666666666666 666666666666
Q ss_pred HHhCCCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 000176 1809 LLSLPRHK--HIKFISQTAILEFKNGVADRGRSMFEGILSEYP 1849 (1924)
Q Consensus 1809 l~~~p~~~--~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~P 1849 (1924)
+...|... ....|..+|.++...|++++|..+|++++...|
T Consensus 175 l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 175 RDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred hhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 66554321 123455566666666666666666666654444
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.2e-06 Score=103.89 Aligned_cols=200 Identities=11% Similarity=0.006 Sum_probs=162.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HH
Q 000176 1673 NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KV 1751 (1924)
Q Consensus 1673 ~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i 1751 (1924)
+...+|--+.+.+...+..++|...++++++..|.. ..+|.....+....+. ..+++...++++++.+|.. .+
T Consensus 35 ~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~-----ytaW~~R~~iL~~L~~-~l~eeL~~~~~~i~~npknyqa 108 (320)
T PLN02789 35 EFREAMDYFRAVYASDERSPRALDLTADVIRLNPGN-----YTVWHFRRLCLEALDA-DLEEELDFAEDVAEDNPKNYQI 108 (320)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchh-----HHHHHHHHHHHHHcch-hHHHHHHHHHHHHHHCCcchHH
Confidence 333444444444556678899999999999876632 3588877776666663 2488999999999999875 89
Q ss_pred HHHHHHHHHHhCCh--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1752 HLALLGLYERTEQN--KLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1752 ~~~l~~i~~~~gk~--e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
|.....++.+.++. +++.+.+++++...+.+..+|...+-.+... ++++|.+.+.++|+..|.+. .+|...+.+.
T Consensus 109 W~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~--sAW~~R~~vl 186 (320)
T PLN02789 109 WHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN--SAWNQRYFVI 186 (320)
T ss_pred hHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch--hHHHHHHHHH
Confidence 99999988888874 7889999999999999999999999888888 99999999999999998885 7888888776
Q ss_pred HHc---CC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHh
Q 000176 1829 FKN---GV----ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL----GDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1829 ~~~---g~----~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~----gd~~~ar~lferal~ 1880 (1924)
... |. .+++.....+++...|++..+|..+..++... +....|...+++++.
T Consensus 187 ~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 187 TRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 655 22 35788888899999999999999998888773 445668889999887
|
|
| >cd04473 S1_RecJ_like S1_RecJ_like: The S1 domain of the archaea-specific RecJ-like exonuclease | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.1e-08 Score=92.46 Aligned_cols=67 Identities=30% Similarity=0.585 Sum_probs=61.1
Q ss_pred cccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEec
Q 000176 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527 (1924)
Q Consensus 1451 ~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lsl 1527 (1924)
.+.++++|+++.|+|+++.+||+||++++ +..||+|.+++. +.|++||.++++|.++ .+++||.|++
T Consensus 10 ~~~~~~~G~~~~g~V~~i~~~G~fV~l~~-~~~Glv~~se~~--------~~~~iGd~v~v~I~~i-~e~~~i~l~~ 76 (77)
T cd04473 10 TMEDLEVGKLYKGKVNGVAKYGVFVDLND-HVRGLIHRSNLL--------RDYEVGDEVIVQVTDI-PENGNIDLIP 76 (77)
T ss_pred chhhCCCCCEEEEEEEeEecceEEEEECC-CcEEEEEchhcc--------CcCCCCCEEEEEEEEE-CCCCcEEEEE
Confidence 46789999999999999999999999987 699999999963 4589999999999999 7999999875
|
The function of this family is not fully understood. In Escherichia coli, RecJ degrades single-stranded DNA in the 5'-3' direction and participates in homologous recombination and mismatch repair. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.2e-06 Score=94.34 Aligned_cols=195 Identities=12% Similarity=0.057 Sum_probs=157.3
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
.+....|...|..++..+|+++.+.++-+..|+..|.-.-|..-++|.|+.-| ++- -.-++..++.+..| ..+
T Consensus 51 ~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKp---DF~--~ARiQRg~vllK~G--ele 123 (504)
T KOG0624|consen 51 RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKP---DFM--AARIQRGVVLLKQG--ELE 123 (504)
T ss_pred hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCc---cHH--HHHHHhchhhhhcc--cHH
Confidence 44477788899999999999999999999999999999999999999998766 322 34567778888899 459
Q ss_pred HHHHHHHHHHhcCCCH----HHHHHHHH------------HHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-
Q 000176 1734 AVVKVFQRALQYCDPK----KVHLALLG------------LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ- 1796 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~----~i~~~l~~------------i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~- 1796 (1924)
.|..-|...++..|+. +.+..++. -+.-+|++..|.++...++...+-...++...+..|...
T Consensus 124 ~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~ 203 (504)
T KOG0624|consen 124 QAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEG 203 (504)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcC
Confidence 9999999999998852 33333332 234568899999999999998888899999999999888
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 000176 1797 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSI 1857 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~ 1857 (1924)
.+..|..-+..+-+...++ ...++..++++|..|+.+.+....+.+|+.+|+...-+..
T Consensus 204 e~k~AI~Dlk~askLs~Dn--Te~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~ 262 (504)
T KOG0624|consen 204 EPKKAIHDLKQASKLSQDN--TEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPF 262 (504)
T ss_pred cHHHHHHHHHHHHhccccc--hHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHH
Confidence 9999998888887766554 4889999999999999999999999999998886544333
|
|
| >smart00316 S1 Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.1e-08 Score=91.04 Aligned_cols=72 Identities=32% Similarity=0.487 Sum_probs=67.9
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEee
Q 000176 1366 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1437 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk 1437 (1924)
++|+++.|+|.++++.|+||.++.++.|++|.+++++.+..++...|++||.+.++|++++++++++.+|++
T Consensus 1 ~~G~~v~g~V~~v~~~g~~v~i~~~~~g~l~~~~~~~~~~~~~~~~~~~G~~v~~~V~~~~~~~~~i~ls~~ 72 (72)
T smart00316 1 EVGDVVEGTVTEITPFGAFVDLGNGVEGLIPISELSDKRVKDPEEVLKVGDEVKVKVLSVDEEKGRIILSLK 72 (72)
T ss_pred CCCCEEEEEEEEEEccEEEEEeCCCCEEEEEHHHCCccccCCHHHeecCCCEEEEEEEEEeCCCCEEEEEeC
Confidence 369999999999999999999999999999999999998888888899999999999999998899999985
|
|
| >COG2183 Tex Transcriptional accessory protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.8e-08 Score=127.98 Aligned_cols=79 Identities=33% Similarity=0.653 Sum_probs=75.2
Q ss_pred cccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1451 ~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
.+.+|++|+++.|+|++|.+||+||.|+ ...+||+|+|++|+.++.++.+.+++||.|+++|++||..++||+|||+..
T Consensus 652 ~i~dLk~Gm~leg~Vrnv~~fgafVdIg-v~qDglvHis~ls~~fv~~P~~vv~vGdiV~v~V~~vD~~r~rI~Lsmr~~ 730 (780)
T COG2183 652 SITDLKPGMILEGTVRNVVDFGAFVDIG-VHQDGLVHISQLSDKFVKDPNEVVKVGDIVKVKVIEVDTARKRIALSMRLD 730 (780)
T ss_pred hHhhccCCCEEEEEEEEeeeccceEEec-cccceeeeHHHhhhhhcCChHHhcccCCEEEEEEEEEecccCeeeeEeecc
Confidence 4679999999999999999999999996 488999999999999999999999999999999999999999999999874
|
|
| >PHA02945 interferon resistance protein; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.2e-08 Score=89.78 Aligned_cols=72 Identities=19% Similarity=0.234 Sum_probs=66.7
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCC--CcEEEEECccC--CCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeeccc
Q 000176 1366 SPNMIVQGYVKNVTSKGCFIMLSR--KLDAKVLLSNL--SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~fV~l~~--~v~g~v~~sel--sd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~ 1440 (1924)
.+|+++-|+|+. .++|+||.|.. +.+||+|+|+. +..++++ ++.+ .||.+.|+|+.+|+.++.|.||||.-.
T Consensus 10 ~~GelvigtV~~-~d~ga~v~L~EY~g~eg~i~~seveva~~wvK~-rd~l-~GqkvV~KVirVd~~kg~IDlSlK~V~ 85 (88)
T PHA02945 10 NVGDVLKGKVYE-NGYALYIDLFDYPHSEAILAESVQMHMNRYFKY-RDKL-VGKTVKVKVIRVDYTKGYIDVNYKRMC 85 (88)
T ss_pred CCCcEEEEEEEe-cCceEEEEecccCCcEEEEEeehhhhccceEee-eeEe-cCCEEEEEEEEECCCCCEEEeEeeEcc
Confidence 589999999999 99999999964 79999999965 9999999 8888 999999999999999999999999754
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.3e-07 Score=118.46 Aligned_cols=164 Identities=13% Similarity=0.050 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHhCChHHHHHHH---HHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 000176 1751 VHLALLGLYERTEQNKLADELL---YKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAI 1826 (1924)
Q Consensus 1751 i~~~l~~i~~~~gk~e~A~~~f---e~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~ 1826 (1924)
++.++-.+..+++....+.+.+ ......|++..+++..++....+. .+++|..+++++++..|++ ..++..||.
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~--~~a~~~~a~ 128 (694)
T PRK15179 51 LLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS--SEAFILMLR 128 (694)
T ss_pred HHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc--HHHHHHHHH
Confidence 3344444555555544444444 445567899999999999999999 9999999999999999988 599999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHH
Q 000176 1827 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE 1906 (1924)
Q Consensus 1827 le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~ 1906 (1924)
.+.+.+.+|+|+..++++|...|++......++..+.+.|++++|..+|++++. ..|+.. ..|..|....+..|+.+
T Consensus 129 ~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~-~~~~~~a~~l~~~G~~~ 205 (694)
T PRK15179 129 GVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSR--QHPEFE-NGYVGWAQSLTRRGALW 205 (694)
T ss_pred HHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--cCCCcH-HHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999999999999999999999998 555656 58999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 000176 1907 RIEYVKQKAMEYV 1919 (1924)
Q Consensus 1907 ~~~~v~~rAle~v 1919 (1924)
+|...|++|++..
T Consensus 206 ~A~~~~~~a~~~~ 218 (694)
T PRK15179 206 RARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998754
|
|
| >cd05688 S1_RPS1_repeat_ec3 S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.4e-08 Score=89.58 Aligned_cols=68 Identities=29% Similarity=0.475 Sum_probs=64.3
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEE
Q 000176 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435 (1924)
Q Consensus 1367 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LS 1435 (1924)
+|+++.|.|.++.++|+||+++ +++|++|.+++++.+..++.+.|++||.|+++|+++|++++++.||
T Consensus 1 ~g~~~~g~V~~v~~~g~~v~l~-~~~g~l~~~e~~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls 68 (68)
T cd05688 1 EGDVVEGTVKSITDFGAFVDLG-GVDGLLHISDMSWGRVKHPSEVVNVGDEVEVKVLKIDKERKRISLG 68 (68)
T ss_pred CCCEEEEEEEEEEeeeEEEEEC-CeEEEEEhHHCCCccccCHhHEECCCCEEEEEEEEEECCCCEEecC
Confidence 4899999999999999999998 7999999999999888889899999999999999999999999876
|
RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 3 (ec3) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.9e-07 Score=116.45 Aligned_cols=199 Identities=13% Similarity=0.167 Sum_probs=168.7
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1736 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~ 1736 (1924)
.-+|...|||+ .+|-..+.||...|+..+|..+..|-++.-|. ..+|..++++-.. .
T Consensus 414 tksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d------~~lyc~LGDv~~d---------~ 470 (777)
T KOG1128|consen 414 TKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEKDPD------PRLYCLLGDVLHD---------P 470 (777)
T ss_pred HHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCc------chhHHHhhhhccC---------h
Confidence 44566677775 78999999999999999999999999974442 2356666555322 2
Q ss_pred HHHHHHHhcCCCH--HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCC
Q 000176 1737 KVFQRALQYCDPK--KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1813 (1924)
Q Consensus 1737 ~vferAl~~~~~~--~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p 1813 (1924)
..|++|..+-+.. .....++....+.++++++...|++.++.++-....|+.++...++. +++.|-..|.+++...|
T Consensus 471 s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~P 550 (777)
T KOG1128|consen 471 SLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEP 550 (777)
T ss_pred HHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 3456666555443 34456666666789999999999999999999999999999999999 99999999999999999
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1814 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1814 ~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
.+. ..|.+++..|.+.++-.+|+..+..+++.+-+++.+|.+|+-+..+.|.++.|...|.|.+.
T Consensus 551 d~~--eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 551 DNA--EAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred Cch--hhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 884 99999999999999999999999999999988899999999999999999999999999987
|
|
| >COG2183 Tex Transcriptional accessory protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.1e-08 Score=125.83 Aligned_cols=86 Identities=31% Similarity=0.596 Sum_probs=81.1
Q ss_pred cchhhhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEE
Q 000176 1356 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435 (1924)
Q Consensus 1356 ~~~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LS 1435 (1924)
+.....+.+|++|+++.|.|.++.++|+||.||-+.+|+||+|.+++.|+++|.+.+++||.|+++|+++|...+||.||
T Consensus 647 ~~~v~~i~dLk~Gm~leg~Vrnv~~fgafVdIgv~qDglvHis~ls~~fv~~P~~vv~vGdiV~v~V~~vD~~r~rI~Ls 726 (780)
T COG2183 647 DEGVESITDLKPGMILEGTVRNVVDFGAFVDIGVHQDGLVHISQLSDKFVKDPNEVVKVGDIVKVKVIEVDTARKRIALS 726 (780)
T ss_pred hhhhhhHhhccCCCEEEEEEEEeeeccceEEeccccceeeeHHHhhhhhcCChHHhcccCCEEEEEEEEEecccCeeeeE
Confidence 34466778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccc
Q 000176 1436 LKTSDS 1441 (1924)
Q Consensus 1436 lk~~~~ 1441 (1924)
||....
T Consensus 727 mr~~~~ 732 (780)
T COG2183 727 MRLDEE 732 (780)
T ss_pred eeccCC
Confidence 998665
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.5e-07 Score=103.62 Aligned_cols=117 Identities=11% Similarity=0.142 Sum_probs=77.1
Q ss_pred hCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHH-HHHcCC--HHHH
Q 000176 1762 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL-EFKNGV--ADRG 1837 (1924)
Q Consensus 1762 ~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~l-e~~~g~--~e~A 1837 (1924)
.++.+++...|++++...|++...|..++..+... ++++|...|++|+...|.+ ..++..+|.. ++..|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~--~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN--AELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCCCcHHH
Confidence 34445666666666666666666666666666666 6666666677666666655 4666666664 345555 4667
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1838 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1838 r~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
+.+|+++++..|++...|+.++..++..|++++|...|++++.
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777777777776666666666666666777777777777666
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.6e-07 Score=103.61 Aligned_cols=121 Identities=12% Similarity=0.093 Sum_probs=111.0
Q ss_pred CHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH-Hhc-C--HHHHHHHH
Q 000176 1731 PEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL-LKQ-Q--QEGVQAVV 1805 (1924)
Q Consensus 1731 ~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l-~~~-~--~~~A~~l~ 1805 (1924)
+.+.+...++++++.+|.+ +.|..++.+|...|++++|...|+++++..|++..+|..|+..+ ... + .++|+++|
T Consensus 54 ~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l 133 (198)
T PRK10370 54 TPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMI 133 (198)
T ss_pred hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 4577888999999999875 99999999999999999999999999999999999999999976 454 4 69999999
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000176 1806 QRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1853 (1924)
Q Consensus 1806 ~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d 1853 (1924)
+++++..|.+ +.++..+|..+++.|++++|...|+++++..|.+.+
T Consensus 134 ~~al~~dP~~--~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 134 DKALALDANE--VTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHhCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 9999999987 589999999999999999999999999999987543
|
|
| >PRK09521 exosome complex RNA-binding protein Csl4; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-07 Score=106.64 Aligned_cols=96 Identities=20% Similarity=0.415 Sum_probs=79.1
Q ss_pred EEEeCCCCEEEEEeecccccccchhccccccccCCCcEEEEEEEEeecceEEEEEec---------CceeEEeeccccCc
Q 000176 1423 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN---------TNLVGLCHVSELSE 1493 (1924)
Q Consensus 1423 l~vd~e~~ri~LSlk~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~---------~~v~gl~h~sels~ 1493 (1924)
+++|.++++|.+. ||.. ....+++|++|.|+|+++.++|+||+|.. .++.|++|++++++
T Consensus 41 ~~id~~~~~Isv~-------P~~~----~~~~~~~GdiV~GkV~~i~~~g~~V~I~~~~~~~~~l~~~~~G~l~~s~i~~ 109 (189)
T PRK09521 41 VFIDDINRKISVI-------PFKK----TPPLLKKGDIVYGRVVDVKEQRALVRIVSIEGSERELATSKLAYIHISQVSD 109 (189)
T ss_pred EEEcCCCCEEEEe-------cCcC----CCCCCCCCCEEEEEEEEEcCCeEEEEEEEecccccccCCCceeeEEhhHcCh
Confidence 3557677777762 3322 13467899999999999999999999952 26889999999999
Q ss_pred ccccCcccccCCCcEEEEEEEEEecCCCeeEEecccccc
Q 000176 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1532 (1924)
Q Consensus 1494 ~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s~~ 1532 (1924)
.+..++.+.|++||.|+|+|++++ +++.||+|...+
T Consensus 110 ~~~~~~~~~~~~GD~V~akV~~i~---~~i~LS~k~~~l 145 (189)
T PRK09521 110 GYVESLTDAFKIGDIVRAKVISYT---DPLQLSTKGKDL 145 (189)
T ss_pred hhhhhHHhccCCCCEEEEEEEecC---CcEEEEEecCCc
Confidence 988889999999999999999998 799999987533
|
|
| >cd05702 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.7e-08 Score=89.97 Aligned_cols=63 Identities=27% Similarity=0.468 Sum_probs=57.8
Q ss_pred CcEEEEEEEEeecceEEEEEecCceeEEeeccccCccc--ccCcccccCCCcEEEEEEEEEecCCC
Q 000176 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH--VDNIETIYRAGEKVKVKILKVDKEKR 1521 (1924)
Q Consensus 1458 G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~--~~~~~~~~~~Gd~Vk~~Vl~id~e~~ 1521 (1924)
|++|.|+|+++.++|+||+|.+ +++|++|++++++.+ ..++.+.|++||.|+|+|+++|.++.
T Consensus 1 G~iV~g~V~~i~~~gi~v~l~~-~i~g~i~~~~i~~~~~~~~~~~~~~~~Gd~i~~kVl~~d~~~~ 65 (70)
T cd05702 1 GDLVKAKVKSVKPTQLNVQLAD-NVHGRIHVSEVFDEWPDGKNPLSKFKIGQKIKARVIGGHDAKT 65 (70)
T ss_pred CCEEEEEEEEEECCcEEEEeCC-CcEEEEEHHHhccccccccChhHhCCCCCEEEEEEEEEeCccc
Confidence 7899999999999999999976 899999999999884 77888999999999999999997554
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 11 (hs11) and S. cerevisiae S1 repeat 8 (sc8). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.8e-08 Score=94.00 Aligned_cols=75 Identities=20% Similarity=0.143 Sum_probs=67.3
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCC----cccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeeccc
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD----GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd----~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~ 1440 (1924)
.++|++|.|.|.++.++|+||.++.+.+|++|++++++ .+..+..+.|++||.+.|+|++++++ +++.||++...
T Consensus 4 p~~GdiV~g~V~~i~~~g~~v~i~~~~~G~l~~se~~~~~~~~~~~~~~~~l~vGd~i~~~V~~~~~~-~~i~LS~~~~~ 82 (86)
T cd05789 4 PEVGDVVIGRVTEVGFKRWKVDINSPYDAVLPLSEVNLPRTDEDELNMRSYLDEGDLIVAEVQSVDSD-GSVSLHTRSLK 82 (86)
T ss_pred CCCCCEEEEEEEEECCCEEEEECCCCeEEEEEHHHccCCCCccchHHHHhhCCCCCEEEEEEEEECCC-CCEEEEeCccc
Confidence 46999999999999999999999999999999999996 44566677899999999999999975 99999998743
|
S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure". |
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.3e-06 Score=115.28 Aligned_cols=198 Identities=10% Similarity=0.005 Sum_probs=161.4
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-
Q 000176 1670 SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP- 1748 (1924)
Q Consensus 1670 ~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~- 1748 (1924)
..|+.+..-...+-...+.|+++.|+..++++++..|.... .++ .|+.+....| ..++|...+++|+...+.
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~----av~-dll~l~~~~G--~~~~A~~~~eka~~p~n~~ 101 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSG----QVD-DWLQIAGWAG--RDQEVIDVYERYQSSMNIS 101 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchh----hHH-HHHHHHHHcC--CcHHHHHHHHHhccCCCCC
Confidence 45777777777777778999999999999999988774310 123 6666666778 459999999999932221
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000176 1749 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1827 (1924)
Q Consensus 1749 ~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~l 1827 (1924)
......++.+|...|++++|.++|+++++..|+++.++..++..+.+. +.++|.+.+++++...|... .+...+.+
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~---~~l~layL 178 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQ---NYMTLSYL 178 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchH---HHHHHHHH
Confidence 355556688999999999999999999999999999999888888888 99999999999999998752 33555666
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000176 1828 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1877 (1924)
Q Consensus 1828 e~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lfer 1877 (1924)
+...++..+|...|++++...|.+.+++..|...+.+.|-...|..+..+
T Consensus 179 ~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 179 NRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred HHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 66677776799999999999999999999999999999988887776664
|
|
| >PLN00207 polyribonucleotide nucleotidyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.2e-08 Score=127.90 Aligned_cols=82 Identities=16% Similarity=0.313 Sum_probs=76.9
Q ss_pred cCCCCCEEE-EEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeeccccc
Q 000176 1364 DLSPNMIVQ-GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1442 (1924)
Q Consensus 1364 ~lk~G~~v~-G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~ 1442 (1924)
+.++|+++. |.|++|.++|+||+|.++++|+||+|+|+|.++.++.+.|++||.|+++|+++|+ .+||.||+|....+
T Consensus 750 ~~~vG~iy~~g~V~~I~~FGaFVeL~~g~EGLVHISeLs~~rv~~~~dv~kvGD~V~VkVi~ID~-~grI~LSlK~l~~~ 828 (891)
T PLN00207 750 VPTVGDIYRNCEIKSIAPYGAFVEIAPGREGLCHISELSSNWLAKPEDAFKVGDRIDVKLIEVND-KGQLRLSRRALLPE 828 (891)
T ss_pred CcCCCcEEECcEEEEEeccEEEEEeCCCCEEEEEhhhcCCccccCHHHhcCCCCEEEEEEEEECC-CCcEEEEEeccccC
Confidence 468999996 6999999999999999999999999999999999999999999999999999996 89999999999888
Q ss_pred ccch
Q 000176 1443 TASQ 1446 (1924)
Q Consensus 1443 ~~~~ 1446 (1924)
||..
T Consensus 829 Pw~~ 832 (891)
T PLN00207 829 ANSE 832 (891)
T ss_pred chhh
Confidence 8764
|
|
| >cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.4e-08 Score=92.05 Aligned_cols=75 Identities=21% Similarity=0.277 Sum_probs=69.0
Q ss_pred CCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccccc
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1532 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s~~ 1532 (1924)
++||+|.|+|+++.+.|++|.+.. ...|++|.++++..+..++.+.|++||.+.|+|+++|.+ +++.||++...+
T Consensus 5 ~~GdiV~G~V~~v~~~~~~V~i~~-~~~g~l~~~~~~~~~~~~~~~~~~~GD~i~~~V~~~~~~-~~i~LS~~~~~~ 79 (82)
T cd04454 5 DVGDIVIGIVTEVNSRFWKVDILS-RGTARLEDSSATEKDKKEIRKSLQPGDLILAKVISLGDD-MNVLLTTADNEL 79 (82)
T ss_pred CCCCEEEEEEEEEcCCEEEEEeCC-CceEEeechhccCcchHHHHhcCCCCCEEEEEEEEeCCC-CCEEEEECCCCC
Confidence 789999999999999999999964 899999999999888888899999999999999999986 999999987543
|
S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein, and Rrp40 and Csl4 proteins, also represented in this group, are subunits of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure". |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.1e-06 Score=97.22 Aligned_cols=229 Identities=14% Similarity=0.113 Sum_probs=143.9
Q ss_pred hcCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcch----------------------
Q 000176 1653 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREE---------------------- 1710 (1924)
Q Consensus 1653 ~~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee---------------------- 1710 (1924)
..++..++..-||+....+|.....--.|+-.+-+.|+++....+-.+.+....+..+
T Consensus 244 ~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~ 323 (564)
T KOG1174|consen 244 YNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFV 323 (564)
T ss_pred hhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 4677888888888888888887777777777666666666655555555433222110
Q ss_pred -------hhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC
Q 000176 1711 -------NEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHS 1782 (1924)
Q Consensus 1711 -------~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~ 1782 (1924)
.....-++.-.++..+.+ +.++|.-.|+.|....|.. ..|.-+...|...+++.+|.-+-..+.+.++++
T Consensus 324 eK~I~~~~r~~~alilKG~lL~~~~--R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s 401 (564)
T KOG1174|consen 324 EKCIDSEPRNHEALILKGRLLIALE--RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS 401 (564)
T ss_pred HHHhccCcccchHHHhccHHHHhcc--chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc
Confidence 000123344445555555 3366666666666666543 666666666666666666666666666666666
Q ss_pred HHHHHHHH-HHHHhc--CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 000176 1783 CKVWLRRV-QRLLKQ--QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYL 1859 (1924)
Q Consensus 1783 ~~vw~~~a-~~l~~~--~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~ 1859 (1924)
......++ ..++.. --++|..+++++|...|.. +.+....|.+....|.++.+..++|+.|..+|+. .+...++
T Consensus 402 A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y--~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lg 478 (564)
T KOG1174|consen 402 ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY--TPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLG 478 (564)
T ss_pred hhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc--HHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHH
Confidence 66665553 333333 5566777777777777666 4666677777777777777777777777777664 4566667
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1860 DQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1860 ~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
++....+.++.|...|..|+. +.|++-
T Consensus 479 d~~~A~Ne~Q~am~~y~~ALr--~dP~~~ 505 (564)
T KOG1174|consen 479 DIMRAQNEPQKAMEYYYKALR--QDPKSK 505 (564)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCccch
Confidence 777777777777777777776 444443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.1e-05 Score=100.70 Aligned_cols=203 Identities=13% Similarity=0.041 Sum_probs=95.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-
Q 000176 1671 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK- 1749 (1924)
Q Consensus 1671 ~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~- 1749 (1924)
+|++...|...+.++...++.+.|...+.++.+..+.+.+ ....+.-........+ +.++|.+.+++++...|..
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~P~~~ 77 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARAT--ERERAHVEALSAWIAG--DLPKALALLEQLLDDYPRDL 77 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCCcH
Confidence 4555555555555555555555555555555544442211 1112222223333444 3355555555555555543
Q ss_pred HHHH---HHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 000176 1750 KVHL---ALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1825 (1924)
Q Consensus 1750 ~i~~---~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A 1825 (1924)
..|. .+.......+....+.+.+......++.....+..++..+..+ ++++|...|++++...|.+. .++..+|
T Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~--~~~~~la 155 (355)
T cd05804 78 LALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDA--WAVHAVA 155 (355)
T ss_pred HHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc--HHHHHHH
Confidence 2222 1111112223333333333332222233333334444455555 55555555555555555542 4455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1826 ILEFKNGVADRGRSMFEGILSEYPKR----TDLWSIYLDQEIRLGDVDLIRGLFERAI 1879 (1924)
Q Consensus 1826 ~le~~~g~~e~Ar~lfe~aL~~~Pk~----~dlw~~y~~le~k~gd~~~ar~lferal 1879 (1924)
.+++..|++++|+..|++++...|.. .+.|..++.++...|++++|..+|++++
T Consensus 156 ~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 156 HVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 55555555555555555555554422 1234455555555555555555555554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-06 Score=109.14 Aligned_cols=225 Identities=15% Similarity=0.110 Sum_probs=174.2
Q ss_pred cCCCCchHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--CcchhhH-HHHHHHHHH
Q 000176 1654 EKDAPRTPDEFERLVRS--------SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTIN--IREENEK-LNIWVAYFN 1722 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~--------~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~--~~ee~ek-l~lWiayl~ 1722 (1924)
.++.+.|...|++++.. .|.-...-..++.+|..++++++|..+|++||...- +.++.+. ......+..
T Consensus 212 ~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ 291 (508)
T KOG1840|consen 212 QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAV 291 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 35588899999999876 566556666789999999999999999999996321 1111111 134444555
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCCC------H---HHHHHHHHHHHHhCChHHHHHHHHHHHHhcC--------CCHHH
Q 000176 1723 LENEYGNPPEEAVVKVFQRALQYCDP------K---KVHLALLGLYERTEQNKLADELLYKMIKKFK--------HSCKV 1785 (1924)
Q Consensus 1723 le~~~g~~~~e~a~~vferAl~~~~~------~---~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~--------~~~~v 1785 (1924)
++...| ..++|+..++||+..... . ..+..++.++...+++++|..+|+++++.+. .-..+
T Consensus 292 ly~~~G--Kf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~ 369 (508)
T KOG1840|consen 292 LYYKQG--KFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKI 369 (508)
T ss_pred HHhccC--ChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 556677 459999999999976422 1 6677778889999999999999999998763 23678
Q ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHhCCC---CCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC
Q 000176 1786 WLRRVQRLLKQ-QQEGVQAVVQRALLSLPR---HKH---IKFISQTAILEFKNGVADRGRSMFEGILSE-------YPKR 1851 (1924)
Q Consensus 1786 w~~~a~~l~~~-~~~~A~~l~~ral~~~p~---~~~---~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~-------~Pk~ 1851 (1924)
+.+++..++.+ ++++|+++|+.|++.... ..+ -..+..+|..+.+.+.++.|-.+|+.+... +|+-
T Consensus 370 ~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~ 449 (508)
T KOG1840|consen 370 YANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDV 449 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCch
Confidence 89999999999 999999999999987622 111 145667788888999999899999888654 3555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1852 TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1852 ~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
...+..++.+|.+.|+++.|.++.++++.
T Consensus 450 ~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 450 TYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 66788999999999999999999999985
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.60 E-value=1e-06 Score=93.62 Aligned_cols=117 Identities=10% Similarity=-0.029 Sum_probs=88.2
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC
Q 000176 1737 KVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1814 (1924)
Q Consensus 1737 ~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~ 1814 (1924)
+.|++++...|.. ...+.++..+...+++++|.+.|++++..++.++.+|..++.++... ++++|...|++++...|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3567777777654 66777777777778888888888887777777778888888777777 777888888887777766
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 000176 1815 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLW 1855 (1924)
Q Consensus 1815 ~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw 1855 (1924)
. ...|..+|.++...|++++|...|+++++..|++...+
T Consensus 84 ~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 D--PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred C--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 5 47777777777777888888888888887777766644
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=7e-06 Score=91.35 Aligned_cols=159 Identities=13% Similarity=0.124 Sum_probs=105.5
Q ss_pred HHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCH
Q 000176 1756 LGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1834 (1924)
Q Consensus 1756 ~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~ 1834 (1924)
+-.....++...|...++++...||.+..+-..+|.++... .+++|.++|++.|.-+|.+. -++.+-..+...+|..
T Consensus 59 ~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~--v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 59 FIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDT--VIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchh--HHHHHHHHHHHHcCCc
Confidence 33444567777777777777777777777777777766666 77777777777777777664 3333444444456666
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcC---CHHHHHHH
Q 000176 1835 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVG---EEERIEYV 1911 (1924)
Q Consensus 1835 e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G---~~~~~~~v 1911 (1924)
-.|...+...|..+|.+.++|..++.+|+..|++++|.-+||.++- ..|-.. .+|.+|.+..--.| +.+.++.+
T Consensus 137 l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll--~~P~n~-l~f~rlae~~Yt~gg~eN~~~arky 213 (289)
T KOG3060|consen 137 LEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL--IQPFNP-LYFQRLAEVLYTQGGAENLELARKY 213 (289)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--cCCCcH-HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 6777777777777777777777777777777777777777777776 555555 56777776533333 45566777
Q ss_pred HHHHHHHH
Q 000176 1912 KQKAMEYV 1919 (1924)
Q Consensus 1912 ~~rAle~v 1919 (1924)
|++|++.-
T Consensus 214 y~~alkl~ 221 (289)
T KOG3060|consen 214 YERALKLN 221 (289)
T ss_pred HHHHHHhC
Confidence 77776643
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1e-06 Score=94.76 Aligned_cols=117 Identities=9% Similarity=-0.054 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1768 ADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILS 1846 (1924)
Q Consensus 1768 A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~ 1846 (1924)
-..+|++++... +..|..++..+... ++++|...|++++...|.+ ..+|..+|..+...|++++|...|++++.
T Consensus 12 ~~~~~~~al~~~---p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 12 PEDILKQLLSVD---PETVYASGYASWQEGDYSRAVIDFSWLVMAQPWS--WRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHcC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 357888888864 44577888888888 9999999999999999987 59999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHH
Q 000176 1847 EYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1892 (1924)
Q Consensus 1847 ~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw 1892 (1924)
..|.+.+.|..++..+...|+++.|+..|++++. +.|... ..|
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~-~~~ 129 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADA-SWS 129 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCh-HHH
Confidence 9999999999999999999999999999999999 778777 345
|
|
| >PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.3e-08 Score=126.80 Aligned_cols=76 Identities=36% Similarity=0.687 Sum_probs=71.8
Q ss_pred ccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEeccc
Q 000176 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529 (1924)
Q Consensus 1452 ~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~ 1529 (1924)
..++++|+++.|+|++|.+||+||+|.+ +.+||+|+|++++.++.++.+.|++||.|+|+|+++|++ +||.||+|.
T Consensus 616 ~~~~~vG~v~~G~V~~I~~fGafVei~~-~~~GllhiSels~~~v~~~~~v~kvGD~V~VkV~~iD~~-grI~LS~k~ 691 (693)
T PRK11824 616 TAEPEVGEIYEGKVVRIVDFGAFVEILP-GKDGLVHISEIADERVEKVEDVLKEGDEVKVKVLEIDKR-GRIRLSRKA 691 (693)
T ss_pred cccCcCCeEEEEEEEEEECCeEEEEECC-CCEEEEEeeeccCccccCccceeCCCCEEEEEEEEECCC-CcEEEEEEe
Confidence 3568999999999999999999999986 899999999999999999999999999999999999987 999999986
|
|
| >COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.2e-08 Score=120.51 Aligned_cols=104 Identities=25% Similarity=0.534 Sum_probs=85.4
Q ss_pred EEEeCCCCEEEEEeecccccccch-hccccccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCccc
Q 000176 1423 LSVEPLSKRVEVTLKTSDSRTASQ-SEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1501 (1924)
Q Consensus 1423 l~vd~e~~ri~LSlk~~~~~~~~~-~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~ 1501 (1924)
+.++ +++.+.++-.......... ........+.+|+++.|+|+++.+||+||+|.+ +-.||||+|++++.+++...+
T Consensus 585 Idie-ddGtv~i~~s~~~~~~~ak~~I~~i~~e~evg~iy~G~V~ri~~fGaFv~l~~-gkdgl~hiS~~~~~rv~kv~d 662 (692)
T COG1185 585 IDIE-DDGTVKIAASDGESAKKAKERIEAITREVEVGEVYEGTVVRIVDFGAFVELLP-GKDGLVHISQLAKERVEKVED 662 (692)
T ss_pred EEec-CCCcEEEEecchHHHHHHHHHHHHHHhhcccccEEEEEEEEEeecceEEEecC-CcceeEEehhhhhhhhhcccc
Confidence 4555 6777777776543211111 111125789999999999999999999999988 899999999999999999999
Q ss_pred ccCCCcEEEEEEEEEecCCCeeEEeccc
Q 000176 1502 IYRAGEKVKVKILKVDKEKRRISLGMKS 1529 (1924)
Q Consensus 1502 ~~~~Gd~Vk~~Vl~id~e~~ri~lslK~ 1529 (1924)
.+++||.|+++|+.+| +++|+.||+|.
T Consensus 663 vlk~Gd~v~Vkv~~iD-~~Gri~ls~~~ 689 (692)
T COG1185 663 VLKEGDEVKVKVIEID-KQGRIRLSIKA 689 (692)
T ss_pred eeecCceEEEEEeeec-ccCCccceehh
Confidence 9999999999999999 68999999986
|
|
| >cd04453 S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.1e-07 Score=90.20 Aligned_cols=75 Identities=16% Similarity=0.108 Sum_probs=66.1
Q ss_pred cCCCCCEEEEEEEEEeec--eEEEEeCCCcEEEEECccCCC---cccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeec
Q 000176 1364 DLSPNMIVQGYVKNVTSK--GCFIMLSRKLDAKVLLSNLSD---GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438 (1924)
Q Consensus 1364 ~lk~G~~v~G~V~~v~~~--G~fV~l~~~v~g~v~~selsd---~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~ 1438 (1924)
.+++|+++.|.|+++.++ |+||+|+++.+||+|+++++| .++.++.+.|++||.|.|+|+......+...||.+-
T Consensus 4 ~~~~G~iy~g~V~~i~~~~~GaFV~l~~g~~Gllh~seis~~~~~~v~~~~~~~~~Gd~v~VqV~~~~~~~K~~~lt~~~ 83 (88)
T cd04453 4 EPIVGNIYLGRVKKIVPGLQAAFVDIGLGKNGFLHLSDILPAYFKKHKKIAKLLKEGQEILVQVVKEPIGTKGPRLTTNI 83 (88)
T ss_pred cCCCCCEEEEEEEEeccCCcEEEEEeCCCCEEEEEhHHcCchhccccCCHHHcCCCCCEEEEEEEEecCCCCCceEEEEE
Confidence 367999999999999996 999999999999999999999 567788889999999999999987767766666654
|
RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and the maturation of tRNA, 10Sa RNA and the M1 precursor of RNase P. RNase E associates with PNPase (3' to 5' exonuclease), Rhl B (DEAD-box RNA helicase) and enolase (glycolytic enzyme) to form the RNA degradosome. RNase E tends to cut mRNA within single-stranded regions that are rich in A/U nucleotides. The N-terminal region of RNase E contains the catalytic site. Within the conserved N-terminal domain of RNAse E and RNase G, there is an S1-like subdomain, which is an ancient single-stranded RNA-binding domain. S1 domain is an RNA-binding module originally identified in the ribosomal protein S1. The S1 domain is required for RNA cleavage by RNase E. RNase G is paralogous to RNase E with an N-terminal catalytic domain th |
| >cd04471 S1_RNase_R S1_RNase_R: RNase R C-terminal S1 domain | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.7e-07 Score=89.18 Aligned_cols=70 Identities=30% Similarity=0.448 Sum_probs=62.3
Q ss_pred CCCEEEEEEEEEeeceEEEEeCC-CcEEEEECccCCCcccC-----------CCCccCCCCcEEEEEEEEEeCCCCEEEE
Q 000176 1367 PNMIVQGYVKNVTSKGCFIMLSR-KLDAKVLLSNLSDGYVE-----------SPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434 (1924)
Q Consensus 1367 ~G~~v~G~V~~v~~~G~fV~l~~-~v~g~v~~selsd~~~~-----------~~~~~f~~G~~V~~kVl~vd~e~~ri~L 1434 (1924)
+|+++.|.|++++++|+||+|++ +++|++|++++++.+.. .+...|++||.|+++|+++|.+++++.+
T Consensus 1 ~g~~~~g~V~~v~~~G~fv~l~~~~~~G~v~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~gd~v~v~v~~vd~~~~~i~~ 80 (83)
T cd04471 1 VGEEFDGVISGVTSFGLFVELDNLTVEGLVHVSTLGDDYYEFDEENHALVGERTGKVFRLGDKVKVRVVRVDLDRRKIDF 80 (83)
T ss_pred CCCEEEEEEEeEEeeeEEEEecCCCEEEEEEEEecCCCcEEEcccceEEEeccCCCEEcCCCEEEEEEEEeccccCEEEE
Confidence 38899999999999999999998 89999999999976421 3457899999999999999999999999
Q ss_pred Ee
Q 000176 1435 TL 1436 (1924)
Q Consensus 1435 Sl 1436 (1924)
++
T Consensus 81 ~l 82 (83)
T cd04471 81 EL 82 (83)
T ss_pred EE
Confidence 86
|
RNase R is a processive 3' to 5' exoribonuclease, which is a homolog of RNase II. RNase R degrades RNA with secondary structure having a 3' overhang of at least 7 nucleotides. RNase R and PNPase play an important role in the degradation of RNA with extensive secondary structure, such as rRNA, tRNA, and certain mRNA which contains repetitive extragenic palindromic sequences. The C-terminal S1 domain binds ssRNA. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.2e-05 Score=89.53 Aligned_cols=192 Identities=15% Similarity=0.159 Sum_probs=156.9
Q ss_pred CCchHHHHHHHHHhCCC---CHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCC
Q 000176 1657 APRTPDEFERLVRSSPN---SSFVWIKYMAFM---LSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP 1730 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~---s~~~W~~y~~~~---~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~ 1730 (1924)
.++-...++..+...+. -.+.|.-|=+.. +..++.+-|...+.+....+|.+. .+-.-+.-+....+.+
T Consensus 28 seevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~-----RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 28 SEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSK-----RVGKLKAMLLEATGNY 102 (289)
T ss_pred HHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh-----hHHHHHHHHHHHhhch
Confidence 55666677777755543 356776665444 567899999999999999998654 2444455555666744
Q ss_pred CHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHH
Q 000176 1731 PEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRA 1808 (1924)
Q Consensus 1731 ~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ra 1808 (1924)
+.|.++|++.++-+|.+ -+|-.-+.+....|+.-+|.+.....+++|..+.++|..++.+|+.. ++++|.-.|+++
T Consensus 103 --~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 --KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred --hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 88999999999998876 67778888888899999999999999999999999999999999999 999999999999
Q ss_pred HHhCCCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHH
Q 000176 1809 LLSLPRHKHIKFISQTAILEFKNG---VADRGRSMFEGILSEYPKRTDLWSI 1857 (1924)
Q Consensus 1809 l~~~p~~~~~~~~~~~A~le~~~g---~~e~Ar~lfe~aL~~~Pk~~dlw~~ 1857 (1924)
+-..|.. +-.+.+||.++|..| +++-||++|+++|+..|++...|+-
T Consensus 181 ll~~P~n--~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 181 LLIQPFN--PLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFG 230 (289)
T ss_pred HHcCCCc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHH
Confidence 9998877 478899999998776 6789999999999999988887764
|
|
| >COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.4e-08 Score=107.55 Aligned_cols=75 Identities=27% Similarity=0.393 Sum_probs=71.5
Q ss_pred CCCEEEEEEEEEecCeEEEEE--CCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000176 761 PNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1924)
Q Consensus 761 ~G~~~~G~V~~i~~~G~fV~f--~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~~ 835 (1924)
+|+.+.|+|++|.+||+||.+ |+|+.||+|.|+++...+.++.+++++||.|.|+|+++|+.++-+-||||....
T Consensus 11 eGEiVv~tV~~V~~~GAyv~L~EY~g~Eg~ihiSEvas~wVknIrd~vkegqkvV~kVlrVd~~rg~IDLSlkrV~~ 87 (269)
T COG1093 11 EGEIVVGTVKQVADYGAYVELDEYPGKEGFIHISEVASGWVKNIRDYVKEGQKVVAKVLRVDPKRGHIDLSLKRVTE 87 (269)
T ss_pred CCcEEEEEEEEeeccccEEEeeccCCeeeeEEHHHHHHHHHHHHHHHhhcCCeEEEEEEEEcCCCCeEeeehhhCCH
Confidence 599999999999999999999 689999999999999999999999999999999999999999999999998753
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.3e-06 Score=102.95 Aligned_cols=75 Identities=21% Similarity=0.047 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000176 1819 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI-RLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1896 (1924)
Q Consensus 1819 ~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~-k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl 1896 (1924)
.-|..|..+++..|++-+-..++++++..++-..++|..|..+.- .++-.+++-..+-|++. .+|.-. .+|++|+
T Consensus 313 q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R--~cp~tg-dL~~ral 388 (881)
T KOG0128|consen 313 QEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVR--SCPWTG-DLWKRAL 388 (881)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhc--CCchHH-HHHHHHH
Confidence 455555555555555555555555555555555555555544332 22333444455555554 344333 5777776
|
|
| >cd05702 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.3e-07 Score=86.34 Aligned_cols=63 Identities=21% Similarity=0.355 Sum_probs=58.5
Q ss_pred CCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcc--cCCCCccCCCCcEEEEEEEEEeCCCC
Q 000176 1368 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY--VESPEKEFPIGKLVAGRVLSVEPLSK 1430 (1924)
Q Consensus 1368 G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~--~~~~~~~f~~G~~V~~kVl~vd~e~~ 1430 (1924)
|++|.|.|+++.++|+||.|+.+++|++|++++++.| ..++.+.|++||.|+|+|+++|.++.
T Consensus 1 G~iV~g~V~~i~~~gi~v~l~~~i~g~i~~~~i~~~~~~~~~~~~~~~~Gd~i~~kVl~~d~~~~ 65 (70)
T cd05702 1 GDLVKAKVKSVKPTQLNVQLADNVHGRIHVSEVFDEWPDGKNPLSKFKIGQKIKARVIGGHDAKT 65 (70)
T ss_pred CCEEEEEEEEEECCcEEEEeCCCcEEEEEHHHhccccccccChhHhCCCCCEEEEEEEEEeCccc
Confidence 7899999999999999999999999999999999986 78888899999999999999996543
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 11 (hs11) and S. cerevisiae S1 repeat 8 (sc8). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.6e-05 Score=100.40 Aligned_cols=250 Identities=16% Similarity=0.114 Sum_probs=175.9
Q ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 000176 1660 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVF 1739 (1924)
Q Consensus 1660 a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vf 1739 (1924)
+...+|+++..+|+|+.+-+.++-.|..+.+++.|.....++++..+-. ....|.-+.-+...++ +...|..+.
T Consensus 463 slqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~----~~~~whLLALvlSa~k--r~~~Al~vv 536 (799)
T KOG4162|consen 463 SLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGD----SAKAWHLLALVLSAQK--RLKEALDVV 536 (799)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCc----cHHHHHHHHHHHhhhh--hhHHHHHHH
Confidence 4567888888899999888888888888889999999999999754432 2456877777666666 447777777
Q ss_pred HHHHhcCCCH----------------------------HHHHHHHHHH----------------HHhCChHHHHHHHHHH
Q 000176 1740 QRALQYCDPK----------------------------KVHLALLGLY----------------ERTEQNKLADELLYKM 1775 (1924)
Q Consensus 1740 erAl~~~~~~----------------------------~i~~~l~~i~----------------~~~gk~e~A~~~fe~~ 1775 (1924)
.-|+...+.+ .+|.+.-.+. ....+.-+|...+.++
T Consensus 537 d~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l 616 (799)
T KOG4162|consen 537 DAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL 616 (799)
T ss_pred HHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHH
Confidence 7777665441 1122000000 0011222333333322
Q ss_pred HHh-------c------C-------------CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1776 IKK-------F------K-------------HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1776 lk~-------~------~-------------~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
.+. + | ...++|+..+..+... ..++|+..+.+|-+.+|.. ...|..-|..+
T Consensus 617 s~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~--~~~~~~~G~~~ 694 (799)
T KOG4162|consen 617 SSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS--ASVYYLRGLLL 694 (799)
T ss_pred HHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh--HHHHHHhhHHH
Confidence 211 0 0 0145788888888877 8888888888888887766 47888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH--HHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHH
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR--GLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE 1906 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar--~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~ 1906 (1924)
...|..++|...|-.++..+|+........+.++.+.|+..-|. .++..|+. +.|.+. ..|.......++.|+.+
T Consensus 695 ~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~-eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 695 EVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNH-EAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCH-HHHHHHHHHHHHccchH
Confidence 88888888888888888888888888888888888888655444 48888888 777777 58888888888888888
Q ss_pred HHHHHHHHHHHHHH
Q 000176 1907 RIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1907 ~~~~v~~rAle~v~ 1920 (1924)
.|-.+|+-|+++=.
T Consensus 772 ~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 772 QAAECFQAALQLEE 785 (799)
T ss_pred HHHHHHHHHHhhcc
Confidence 88888888887643
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.4e-06 Score=96.42 Aligned_cols=211 Identities=14% Similarity=0.131 Sum_probs=128.8
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHH---HcCCCCHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLEN---EYGNPPEE 1733 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~---~~g~~~~e 1733 (1924)
..++...-+.++..+..++.+..+-.......|++++|.+.|..||..... --.++.|+-+ .+| ..+
T Consensus 472 ~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas--------c~ealfniglt~e~~~--~ld 541 (840)
T KOG2003|consen 472 FADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS--------CTEALFNIGLTAEALG--NLD 541 (840)
T ss_pred hhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH--------HHHHHHHhcccHHHhc--CHH
Confidence 555555566666666666666666666666677777777777777743221 1223333322 334 346
Q ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 000176 1734 AVVKVFQRALQYC-DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1811 (1924)
Q Consensus 1734 ~a~~vferAl~~~-~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~ 1811 (1924)
+|.+.|-+.-... +.-++...++++|+...+...|.++|.++....|.++.+...++.+|-+. +-..|.+.+-..-..
T Consensus 542 eald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry 621 (840)
T KOG2003|consen 542 EALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY 621 (840)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc
Confidence 6666665543332 22367777777777777777777777777777777777777777766666 666666666666666
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHh
Q 000176 1812 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY-LDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1812 ~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y-~~le~k~gd~~~ar~lferal~ 1880 (1924)
+|.+ +.+.--+|.+|....-.|.|..+||++--..|+.. -|..+ +....+.|++.+|..+|...-.
T Consensus 622 fp~n--ie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~-kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 622 FPCN--IETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS-KWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred cCcc--hHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH-HHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6665 34544455555555556777777777766666543 34333 3344566777777777766544
|
|
| >PRK03987 translation initiation factor IF-2 subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.6e-07 Score=107.56 Aligned_cols=77 Identities=23% Similarity=0.428 Sum_probs=72.1
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCC--CcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecccc
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSR--KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~--~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~ 1441 (1924)
.++|++|.|.|+++.++|+||+|.. +++|++|++++++.++.++.+.|++||.|.|+|+++|+++++|.||+|....
T Consensus 6 P~~GdiV~G~V~~I~~~G~fV~L~e~~gieGlI~iSEls~~~i~~i~~~~kvGd~V~vkVi~VD~~k~~I~LSlK~v~~ 84 (262)
T PRK03987 6 PEEGELVVGTVKEVKDFGAFVTLDEYPGKEGFIHISEVASGWVKNIRDHVKEGQKVVCKVIRVDPRKGHIDLSLKRVNE 84 (262)
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCCCCcEEEEEHHHcCcccccCHHHhCCCCCEEEEEEEEEecccCeEEEEEEeccc
Confidence 3689999999999999999999975 7999999999999999999999999999999999999999999999997654
|
|
| >cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.3e-07 Score=88.27 Aligned_cols=74 Identities=20% Similarity=0.178 Sum_probs=69.2
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeeccc
Q 000176 1366 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~ 1440 (1924)
++|++|.|+|+++.+.|++|+++...+|++|+++++..+..++.+.|++||.+.|+|++++.+ +++.||++...
T Consensus 5 ~~GdiV~G~V~~v~~~~~~V~i~~~~~g~l~~~~~~~~~~~~~~~~~~~GD~i~~~V~~~~~~-~~i~LS~~~~~ 78 (82)
T cd04454 5 DVGDIVIGIVTEVNSRFWKVDILSRGTARLEDSSATEKDKKEIRKSLQPGDLILAKVISLGDD-MNVLLTTADNE 78 (82)
T ss_pred CCCCEEEEEEEEEcCCEEEEEeCCCceEEeechhccCcchHHHHhcCCCCCEEEEEEEEeCCC-CCEEEEECCCC
Confidence 689999999999999999999999999999999999888888888999999999999999976 89999998743
|
S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein, and Rrp40 and Csl4 proteins, also represented in this group, are subunits of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure". |
| >cd04473 S1_RecJ_like S1_RecJ_like: The S1 domain of the archaea-specific RecJ-like exonuclease | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.7e-07 Score=85.91 Aligned_cols=71 Identities=24% Similarity=0.337 Sum_probs=63.7
Q ss_pred hHhhhhcccCCCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCCCCCCCCCCCCCCCEEEEEEEEEcCCCCEEEEEE
Q 000176 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654 (1924)
Q Consensus 575 ~~~~~~~~~~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~~ri~lS~ 654 (1924)
|++..+.+.+.|+.+.|+|+++.++|+||++.++..||+|.+++. ..|++||.++|+|.++ .+++++.+|+
T Consensus 6 ~~~~~~~~~~~G~~~~g~V~~i~~~G~fV~l~~~~~Glv~~se~~--------~~~~iGd~v~v~I~~i-~e~~~i~l~~ 76 (77)
T cd04473 6 DPACTMEDLEVGKLYKGKVNGVAKYGVFVDLNDHVRGLIHRSNLL--------RDYEVGDEVIVQVTDI-PENGNIDLIP 76 (77)
T ss_pred ccccchhhCCCCCEEEEEEEeEecceEEEEECCCcEEEEEchhcc--------CcCCCCCEEEEEEEEE-CCCCcEEEEE
Confidence 455667778899999999999999999999999999999999974 4599999999999999 8899999875
|
The function of this family is not fully understood. In Escherichia coli, RecJ degrades single-stranded DNA in the 5'-3' direction and participates in homologous recombination and mismatch repair. |
| >cd00164 S1_like S1_like: Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.4e-07 Score=84.52 Aligned_cols=65 Identities=40% Similarity=0.798 Sum_probs=60.0
Q ss_pred EEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEe
Q 000176 1461 VIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1526 (1924)
Q Consensus 1461 v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~ls 1526 (1924)
+.|+|+++.++|+||.+.+ ++.|++|.+++++.+..++...|++||.|+|+|+++|++++++.||
T Consensus 1 v~g~V~~v~~~g~~v~l~~-~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~v~~~d~~~~~i~ls 65 (65)
T cd00164 1 VTGKVVSITKFGVFVELED-GVEGLVHISELSDKFVKDPSEVFKVGDEVEVKVLEVDPEKGRISLS 65 (65)
T ss_pred CEEEEEEEEeeeEEEEecC-CCEEEEEHHHCCCccccCHhhEeCCCCEEEEEEEEEcCCcCEEecC
Confidence 4799999999999999975 7999999999999888788889999999999999999999998875
|
Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.5e-05 Score=93.40 Aligned_cols=196 Identities=10% Similarity=0.043 Sum_probs=161.9
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1736 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~ 1736 (1924)
+..|-..-++.+..+|++...++.-+..+.+.+..+.|.-.|+.|...-|+ ++..+..++.-++.++ ...+|.
T Consensus 316 ~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-----rL~~Y~GL~hsYLA~~--~~kEA~ 388 (564)
T KOG1174|consen 316 FERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY-----RLEIYRGLFHSYLAQK--RFKEAN 388 (564)
T ss_pred HHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchh-----hHHHHHHHHHHHHhhc--hHHHHH
Confidence 444555556777889999999999999999999999999999999987776 4668888888889999 568888
Q ss_pred HHHHHHHhcCCCH-HHHHHHH-H-HHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC
Q 000176 1737 KVFQRALQYCDPK-KVHLALL-G-LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1812 (1924)
Q Consensus 1737 ~vferAl~~~~~~-~i~~~l~-~-i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~ 1812 (1924)
.....+.+..+.. .....++ . .+...--.++|...|++.++..|....+-...+..+... .+..+..+++++|..+
T Consensus 389 ~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~ 468 (564)
T KOG1174|consen 389 ALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF 468 (564)
T ss_pred HHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc
Confidence 8888888887764 3333332 2 223344468999999999999999999999999999888 9999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000176 1813 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1862 (1924)
Q Consensus 1813 p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le 1862 (1924)
|+. .+...+|++....+.+..|.+.|..+|+.+|++.....-+-.+|
T Consensus 469 ~D~---~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lE 515 (564)
T KOG1174|consen 469 PDV---NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLE 515 (564)
T ss_pred ccc---HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 876 78999999999999999999999999999999866554443333
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.7e-06 Score=90.29 Aligned_cols=115 Identities=10% Similarity=-0.015 Sum_probs=106.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 000176 1770 ELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY 1848 (1924)
Q Consensus 1770 ~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~ 1848 (1924)
+.|++++...|.+....+.++..++.. ++++|...|++++...|.. ..+|..+|.+++..|++++|..+|++++...
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN--SRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 468889988888888899999999999 9999999999999999876 5899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1849 PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1849 Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
|++.+.|..++.++...|++++|...|++++. +.|+..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~ 119 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIE--ICGENP 119 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccc
Confidence 99999999999999999999999999999999 555544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00024 Score=84.36 Aligned_cols=253 Identities=16% Similarity=0.126 Sum_probs=178.9
Q ss_pred HhcCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCC
Q 000176 1652 LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1731 (1924)
Q Consensus 1652 ~~~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~ 1731 (1924)
+..++.+++.....|.=...+.....++--+...-+.|+.++|-....++-+.-+... +-+-+....+....+++
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~----l~v~ltrarlll~~~d~- 169 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT----LAVELTRARLLLNRRDY- 169 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCch----HHHHHHHHHHHHhCCCc-
Confidence 4455666664433333223344445555555556688999999999999986544322 55677777888888844
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhc-------------------------------
Q 000176 1732 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKF------------------------------- 1779 (1924)
Q Consensus 1732 ~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~------------------------------- 1779 (1924)
+.|+....+++...|.. .+..-...+|.+.|.+.....+..++.+..
T Consensus 170 -~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL 248 (400)
T COG3071 170 -PAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGL 248 (400)
T ss_pred -hhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 89999999999988864 555555666777776666655555544321
Q ss_pred -----------CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 000176 1780 -----------KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE 1847 (1924)
Q Consensus 1780 -----------~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~ 1847 (1924)
+.++.+-..|+..+.+. ..++|.++.+.+++..-+. .+...+..+ +-++++.-....|+.++.
T Consensus 249 ~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~---~L~~~~~~l--~~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 249 KTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP---RLCRLIPRL--RPGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred HHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh---hHHHHHhhc--CCCCchHHHHHHHHHHHh
Confidence 13455666777777777 8888888888888765332 333333322 456777778888888999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000176 1848 YPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919 (1924)
Q Consensus 1848 ~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v 1919 (1924)
.|.+..+|+.++.++++++.+.+|...|+.++. ..|... -|....+...+.|+.+.+..+++.|+-..
T Consensus 324 h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~--~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 324 HPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSAS--DYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChh--hHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998 444433 35556666677999999999999998544
|
|
| >TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.5e-07 Score=119.18 Aligned_cols=71 Identities=21% Similarity=0.324 Sum_probs=66.0
Q ss_pred ccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccC----cccccCcccCCCCCCEEEEEEEEeeCCCCeEEEe
Q 000176 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV----DGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829 (1924)
Q Consensus 758 ~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s----~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lS 829 (1924)
+.++|+++.|.|++|++||+||++.+|+.||+|.|+++ +.++.++.+.|++||.|+|+|+++|. ++|+.|+
T Consensus 644 ~~~vG~i~~GkV~~I~dfGaFVel~~G~eGLvHISeisdls~~~rv~~~~dv~kvGd~V~VKVl~ID~-~gKI~L~ 718 (719)
T TIGR02696 644 MPEVGERFLGTVVKTTAFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLSVGQKIQVEIADIDD-RGKLSLV 718 (719)
T ss_pred cCCCCCEEEEEEEEEECceEEEEecCCceEEEEhhhccccccccCcCCHHHcCCCCCEEEEEEEEECC-CCCeeec
Confidence 47899999999999999999999999999999999995 47889999999999999999999995 7899886
|
Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase. |
| >cd04460 S1_RpoE S1_RpoE: RpoE, S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.8e-07 Score=90.42 Aligned_cols=72 Identities=25% Similarity=0.551 Sum_probs=63.1
Q ss_pred cEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccC-----------cccccCCCcEEEEEEEEEecCC-----Ce
Q 000176 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN-----------IETIYRAGEKVKVKILKVDKEK-----RR 1522 (1924)
Q Consensus 1459 ~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~-----------~~~~~~~Gd~Vk~~Vl~id~e~-----~r 1522 (1924)
+++.|+|+++.++|+||+|. +++|++|++++++++... ....|++||.|+++|.++|.+. ++
T Consensus 1 ~vv~g~V~~i~~~GifV~l~--~v~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Gd~v~vkI~~vd~~~~~~~~~~ 78 (99)
T cd04460 1 EVVEGEVVEVVDFGAFVRIG--PVDGLLHISQIMDDYISYDPKNKRLIGEETKRVLKVGDVVRARIVAVSLKERRPRESK 78 (99)
T ss_pred CEEEEEEEEEEeccEEEEEc--CeEEEEEEEEccCCceEechhheeecccCcCCEECCCCEEEEEEEEEeHHHCcCCCce
Confidence 47899999999999999996 499999999999876543 3478999999999999999874 58
Q ss_pred eEEecccccc
Q 000176 1523 ISLGMKSSYF 1532 (1924)
Q Consensus 1523 i~lslK~s~~ 1532 (1924)
|.||+|..++
T Consensus 79 i~ls~k~~~~ 88 (99)
T cd04460 79 IGLTMRQPGL 88 (99)
T ss_pred EEEEEecCCC
Confidence 9999999776
|
S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. RpoE is subunit E of archaeal RNA polymerase. Archaeal cells contain a single RNA polymerase made up of 12 subunits, which are homologous to the 12 subunits (RPB1-12) of eukaryotic RNA polymerase II. RpoE is homologous to Rpa43 of eukaryotic RNA polymerase I, RPB7 of eukaryotic RNA polymerase II, and Rpc25 of eukaryotic RNA polymerase III. RpoE is composed of two domains, the N-terminal RNP (ribonucleoprotein) domain and the C-terminal S1 domain. This S1 domain binds ssRNA and ssDNA. This family is classified based on the C-terminal S1 domain. The function of RpoE is not fully understood. In eukaryotes, RPB7 and RPB4 form a heterodimer that reversibly associates with the RNA polymerase II core. |
| >cd00164 S1_like S1_like: Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.1e-07 Score=83.02 Aligned_cols=65 Identities=34% Similarity=0.581 Sum_probs=61.0
Q ss_pred EEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEE
Q 000176 1371 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435 (1924)
Q Consensus 1371 v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LS 1435 (1924)
+.|+|.++.+.|+||+++.+.+|++|.+++++.+..++.+.|++||.|+|+|+++|++++++.||
T Consensus 1 v~g~V~~v~~~g~~v~l~~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~v~~~d~~~~~i~ls 65 (65)
T cd00164 1 VTGKVVSITKFGVFVELEDGVEGLVHISELSDKFVKDPSEVFKVGDEVEVKVLEVDPEKGRISLS 65 (65)
T ss_pred CEEEEEEEEeeeEEEEecCCCEEEEEHHHCCCccccCHhhEeCCCCEEEEEEEEEcCCcCEEecC
Confidence 47999999999999999999999999999999988888889999999999999999999998875
|
Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.2e-05 Score=103.02 Aligned_cols=210 Identities=13% Similarity=0.059 Sum_probs=140.9
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHH----------
Q 000176 1669 RSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKV---------- 1738 (1924)
Q Consensus 1669 ~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~v---------- 1738 (1924)
..+|.+..+|.+++..+...+++++|..+.+.+++..|.+- .+|....-+..+.+.+ ..+.-+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i-----~~yy~~G~l~~q~~~~--~~~~lv~~l~~~~~~~ 97 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSI-----SALYISGILSLSRRPL--NDSNLLNLIDSFSQNL 97 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcce-----ehHHHHHHHHHhhcch--hhhhhhhhhhhccccc
Confidence 34689999999999999999999999999999998877533 3455444454444422 222222
Q ss_pred --------HHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 000176 1739 --------FQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALL 1810 (1924)
Q Consensus 1739 --------ferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~~~~~A~~l~~ral~ 1810 (1924)
+.+.+.+.....+++.++.+|.+.|++++|.++|+++++..++++.+..+||.++...+.++|++++.+|+.
T Consensus 98 ~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~ 177 (906)
T PRK14720 98 KWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEEDKEKAITYLKKAIY 177 (906)
T ss_pred chhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 222222222236788888999999999999999999999999999999999988877799999999999988
Q ss_pred hCCCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 000176 1811 SLPRHKH----IKFISQTAILEFKNGVADRGRSMFEGILSEYP--KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP 1884 (1924)
Q Consensus 1811 ~~p~~~~----~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~P--k~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~ 1884 (1924)
.+-..++ ..+|..+.... .-+.+.=..+.++++...- +-.++|...-..|....+++++..+|.+++. ..
T Consensus 178 ~~i~~kq~~~~~e~W~k~~~~~--~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~--~~ 253 (906)
T PRK14720 178 RFIKKKQYVGIEEIWSKLVHYN--SDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE--HD 253 (906)
T ss_pred HHHhhhcchHHHHHHHHHHhcC--cccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh--cC
Confidence 7532211 13344443322 1233333334444444322 2233444444455566788888888888888 66
Q ss_pred chhHH
Q 000176 1885 PKKMK 1889 (1924)
Q Consensus 1885 pk~~k 1889 (1924)
|++.+
T Consensus 254 ~~n~~ 258 (906)
T PRK14720 254 NKNNK 258 (906)
T ss_pred Ccchh
Confidence 66553
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.7e-05 Score=89.23 Aligned_cols=260 Identities=15% Similarity=0.090 Sum_probs=184.2
Q ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCc----chhhHH----HHHHHHHHHHHH
Q 000176 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIR----EENEKL----NIWVAYFNLENE 1726 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~----ee~ekl----~lWiayl~le~~ 1726 (1924)
+..--+..+++|.|...|+-.-+.++-+..++.+|+++.|..-|...|+..|.. +-++++ ..|...-.+-..
T Consensus 86 Gksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~ 165 (504)
T KOG0624|consen 86 GKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSA 165 (504)
T ss_pred cCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHH
Confidence 446667889999999999999999999999999999999999999999877743 223333 334433333333
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHH
Q 000176 1727 YGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAV 1804 (1924)
Q Consensus 1727 ~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l 1804 (1924)
+++-+-..|.+.....+...|=. .+|...+..|...|+...|..-+..+-+.-.++...++...+.+++. +.+.+...
T Consensus 166 ~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 166 SGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred hcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHH
Confidence 33224588888889999888864 88888999999999999999999888888888899999999998888 99999999
Q ss_pred HHHHHHhCCCCChHHHHHHHHHH------------HHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCH
Q 000176 1805 VQRALLSLPRHKHIKFISQTAIL------------EFKNGVADRGRSMFEGILSEYPKRTD----LWSIYLDQEIRLGDV 1868 (1924)
Q Consensus 1805 ~~ral~~~p~~~~~~~~~~~A~l------------e~~~g~~e~Ar~lfe~aL~~~Pk~~d----lw~~y~~le~k~gd~ 1868 (1924)
...+|+.+|.++. .+-.|-++ ....+++-.+.+-.|+.|+..|.-+. ........+...+++
T Consensus 246 iRECLKldpdHK~--Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~ 323 (504)
T KOG0624|consen 246 IRECLKLDPDHKL--CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF 323 (504)
T ss_pred HHHHHccCcchhh--HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH
Confidence 9999999998753 22222211 12455667777777777777776333 333444445556677
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000176 1869 DLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919 (1924)
Q Consensus 1869 ~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v 1919 (1924)
-+|.....+++. +.|+++ ..+..-++-......++.|..-|++|+++-
T Consensus 324 ~eAiqqC~evL~--~d~~dv-~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 324 GEAIQQCKEVLD--IDPDDV-QVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHh--cCchHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 777777777776 666655 333333333333334566666666666553
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.38 E-value=9.1e-06 Score=99.32 Aligned_cols=159 Identities=16% Similarity=0.237 Sum_probs=100.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 000176 1661 PDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1740 (1924)
Q Consensus 1661 ~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vfe 1740 (1924)
...|++.+..+|++..+|++|+.++...-........ .... ..+.-..+|+
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~---------------------------~~~a--~~E~klsile 55 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKA---------------------------ERRA--LAERKLSILE 55 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchh---------------------------hHHH--HHHHHHHHHH
Confidence 3468899999999999999999998654321110000 0000 0123344455
Q ss_pred HHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc----CHHHHHHHHHHHHHhCCCC
Q 000176 1741 RALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ----QQEGVQAVVQRALLSLPRH 1815 (1924)
Q Consensus 1741 rAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~----~~~~A~~l~~ral~~~p~~ 1815 (1924)
||++.+|.. .++..|+..+.+....++..+.+++++..++.++.+|..|..|.... .++..+.+|.++|..+...
T Consensus 56 rAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~ 135 (321)
T PF08424_consen 56 RALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRR 135 (321)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHh
Confidence 555544432 45555555555545555555556666666666666666666666653 5666666666666654321
Q ss_pred ----------------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 000176 1816 ----------------KHIKFISQTAILEFKNGVADRGRSMFEGILSEY 1848 (1924)
Q Consensus 1816 ----------------~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~ 1848 (1924)
..+.++.+++.|+.+.|-.|+|.++++-++..+
T Consensus 136 ~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 136 RSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred hccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 125788999999999999999999999999863
|
|
| >TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.2e-07 Score=119.46 Aligned_cols=72 Identities=36% Similarity=0.698 Sum_probs=66.7
Q ss_pred ccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEE
Q 000176 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1525 (1924)
Q Consensus 1452 ~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~l 1525 (1924)
...+++|++|.|+|++|.+||+||+|.+ +++||+|+|++++.++.++.+.|++||.|+|+|+++|. ++||+|
T Consensus 613 ~~~~~~G~i~~G~V~~I~~~GafVei~~-g~~GllHiSei~~~~v~~~~~~~kvGD~V~VkVi~id~-~gki~L 684 (684)
T TIGR03591 613 TAEPEVGKIYEGKVVRIMDFGAFVEILP-GKDGLVHISEIANERVEKVEDVLKEGDEVKVKVLEIDK-QGRIKL 684 (684)
T ss_pred hcccccCcEEEEEEEEEeCCEEEEEECC-CcEEEEEHHHcCCCcccChhhccCCCCEEEEEEEEECC-CCCccC
Confidence 3467899999999999999999999987 79999999999999999999999999999999999997 788764
|
Members of this protein family are polyribonucleotide nucleotidyltransferase, also called polynucleotide phosphorylase. Some members have been shown also to have additional functions as guanosine pentaphosphate synthetase and as poly(A) polymerase (see model TIGR02696 for an exception clade, within this family). |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00014 Score=90.51 Aligned_cols=131 Identities=9% Similarity=0.082 Sum_probs=99.4
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1736 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~ 1736 (1924)
..+|++.|..+|...|+|..+|..++-.+.|.++++-....-.+.++..|.. ..-|+.|+--....|++ ..|.
T Consensus 91 Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~-----ra~w~~~Avs~~L~g~y--~~A~ 163 (700)
T KOG1156|consen 91 YDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ-----RASWIGFAVAQHLLGEY--KMAL 163 (700)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh-----HHHHHHHHHHHHHHHHH--HHHH
Confidence 6678999999999999999999999999999999999999999999877642 34799888877777754 5565
Q ss_pred HHHHHHHhcC---CCH----------------------------------------HHHHHHHHHHHHhCChHHHHHHHH
Q 000176 1737 KVFQRALQYC---DPK----------------------------------------KVHLALLGLYERTEQNKLADELLY 1773 (1924)
Q Consensus 1737 ~vferAl~~~---~~~----------------------------------------~i~~~l~~i~~~~gk~e~A~~~fe 1773 (1924)
.+.+.-.+.+ ++. ..-...+.++.+.+++++|..+|.
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 5555544443 221 111122336788899999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHH
Q 000176 1774 KMIKKFKHSCKVWLRRVQRLL 1794 (1924)
Q Consensus 1774 ~~lk~~~~~~~vw~~~a~~l~ 1794 (1924)
+++.++|++...+..+-..+.
T Consensus 244 ~Ll~rnPdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 244 RLLERNPDNLDYYEGLEKALG 264 (700)
T ss_pred HHHhhCchhHHHHHHHHHHHH
Confidence 999999988877776666554
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.3e-05 Score=96.63 Aligned_cols=222 Identities=18% Similarity=0.213 Sum_probs=172.1
Q ss_pred CchHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcc--------------hh-h-------HH
Q 000176 1658 PRTPDEFERLVRSSP-NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE--------------EN-E-------KL 1714 (1924)
Q Consensus 1658 p~a~~~ferll~~~P-~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~e--------------e~-e-------kl 1714 (1924)
..|.+...++|..+| ++...|.-++-..-.++++..|..+-+-++...+.+. +. | ++
T Consensus 495 ~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L 574 (799)
T KOG4162|consen 495 TSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKL 574 (799)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHH
Confidence 344555667777754 6899999999999999999999999999998766410 00 1 23
Q ss_pred HHHHHHHHHHHHcCCC--------------CHHHHHHHHHHHHhc--------C-----C--------C------HHHHH
Q 000176 1715 NIWVAYFNLENEYGNP--------------PEEAVVKVFQRALQY--------C-----D--------P------KKVHL 1753 (1924)
Q Consensus 1715 ~lWiayl~le~~~g~~--------------~~e~a~~vferAl~~--------~-----~--------~------~~i~~ 1753 (1924)
.+|-+--.++...++. +.-.+...+.++... + | . ..+|.
T Consensus 575 ~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwl 654 (799)
T KOG4162|consen 575 ALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWL 654 (799)
T ss_pred HHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHH
Confidence 4565222221111100 111222333333221 1 1 1 27899
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC
Q 000176 1754 ALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1832 (1924)
Q Consensus 1754 ~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g 1832 (1924)
..+..+...++.++|.-....+-+.++....+|+..+..+... +.++|.+.|.-|+..+|.+ +......|.++.+.|
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h--v~s~~Ala~~lle~G 732 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH--VPSMTALAELLLELG 732 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999 9999999999999999987 689999999999999
Q ss_pred CHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 000176 1833 VAD--RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1881 (1924)
Q Consensus 1833 ~~e--~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~ 1881 (1924)
+.- .+|.++..+++.+|.+.++|+.++....+.|+.++|-..|.-|+..
T Consensus 733 ~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 733 SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 754 4555999999999999999999999999999999999999999983
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.4e-05 Score=94.95 Aligned_cols=130 Identities=14% Similarity=0.037 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000176 1749 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1827 (1924)
Q Consensus 1749 ~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~l 1827 (1924)
...|+-.+.-+.+.++++.|+..+..+++..|+++-+|...++.+++. +..+|.+.|++++...|.. .-+|+.||+.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~--~~l~~~~a~a 383 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS--PLLQLNLAQA 383 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc--cHHHHHHHHH
Confidence 478888888999999999999999999999999999999999999999 9999999999999999987 4899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1828 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1828 e~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
+++.|++.+|..++.+.+..+|.+...|..+++.+..+|+..++..-+-....
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888877766665
|
|
| >PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.4e-06 Score=115.66 Aligned_cols=76 Identities=24% Similarity=0.315 Sum_probs=72.0
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecc
Q 000176 1363 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439 (1924)
Q Consensus 1363 ~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~ 1439 (1924)
.++++|+++.|.|+++.++|+||+|.++.+|++|+++++|.++.++.+.|++||.|+++|+++|++ ++|.||+|..
T Consensus 617 ~~~~vG~v~~G~V~~I~~fGafVei~~~~~GllhiSels~~~v~~~~~v~kvGD~V~VkV~~iD~~-grI~LS~k~~ 692 (693)
T PRK11824 617 AEPEVGEIYEGKVVRIVDFGAFVEILPGKDGLVHISEIADERVEKVEDVLKEGDEVKVKVLEIDKR-GRIRLSRKAV 692 (693)
T ss_pred ccCcCCeEEEEEEEEEECCeEEEEECCCCEEEEEeeeccCccccCccceeCCCCEEEEEEEEECCC-CcEEEEEEec
Confidence 357899999999999999999999999999999999999999999999999999999999999986 9999999863
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00029 Score=90.43 Aligned_cols=89 Identities=10% Similarity=0.003 Sum_probs=50.4
Q ss_pred HHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 000176 1790 VQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV 1868 (1924)
Q Consensus 1790 a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~ 1868 (1924)
++.+-.. ++++|.++.++||...|.. +++++.-|.++-..|+++.|...++.+-..++.+--+=...+..+++.|++
T Consensus 201 Aqhyd~~g~~~~Al~~Id~aI~htPt~--~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~ 278 (517)
T PF12569_consen 201 AQHYDYLGDYEKALEYIDKAIEHTPTL--VELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRI 278 (517)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCH
Confidence 4444444 5566666666666555554 455555566666666666666666665555555545555555555566666
Q ss_pred HHHHHHHHHHHh
Q 000176 1869 DLIRGLFERAIS 1880 (1924)
Q Consensus 1869 ~~ar~lferal~ 1880 (1924)
+.|..++..-..
T Consensus 279 e~A~~~~~~Ftr 290 (517)
T PF12569_consen 279 EEAEKTASLFTR 290 (517)
T ss_pred HHHHHHHHhhcC
Confidence 665555555444
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.5e-05 Score=103.93 Aligned_cols=197 Identities=11% Similarity=0.114 Sum_probs=119.3
Q ss_pred hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCH-------
Q 000176 1712 EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSC------- 1783 (1924)
Q Consensus 1712 ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~------- 1783 (1924)
.....|.++++++...+ ..++|.++++++++..|.. ..|+.++.+|.+.+++.+|.-+ +++..++...
T Consensus 29 ~n~~a~~~Li~~~~~~~--~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 29 SKFKELDDLIDAYKSEN--LTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH 104 (906)
T ss_pred chHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence 34678999999988888 4599999999999999986 8888888899999888877776 6666665444
Q ss_pred ------------HHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000176 1784 ------------KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1850 (1924)
Q Consensus 1784 ------------~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk 1850 (1924)
.+.+.+|.+|-+. +.++|.++|+++|+..|.+ +.+..+||.++... +.++|++++.+|+..+=+
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n--~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~ 181 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN--PEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK 181 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh
Confidence 4555556555555 6666666666666666554 45666666666655 666666666666654321
Q ss_pred ------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1851 ------RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1851 ------~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
-.++|..|+..... +.+---.+.++++. ..-..++-.+|.-.-+...+..+++.+..++.+++++
T Consensus 182 ~kq~~~~~e~W~k~~~~~~~--d~d~f~~i~~ki~~-~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHYNSD--DFDFFLRIERKVLG-HREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH 252 (906)
T ss_pred hhcchHHHHHHHHHHhcCcc--cchHHHHHHHHHHh-hhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence 12345555443222 22222222222222 1111222223333333334444555666666666654
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.1e-05 Score=97.36 Aligned_cols=98 Identities=20% Similarity=0.312 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC-HHHHHHHHHH
Q 000176 1766 KLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV-ADRGRSMFEG 1843 (1924)
Q Consensus 1766 e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~-~e~Ar~lfe~ 1843 (1924)
.+...+|++++.+|+.+.++|..|+.|..+. .+.+...+|..||...|.+ +.+|...|.++|..+. .+.||.+|.+
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~--~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNN--PDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC--chhHHhhhhhHHhhccchHHHHHHHHH
Confidence 4667889999999999999999999999988 7999999999999999998 5999999999998774 9999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHc
Q 000176 1844 ILSEYPKRTDLWSIYLDQEIRL 1865 (1924)
Q Consensus 1844 aL~~~Pk~~dlw~~y~~le~k~ 1865 (1924)
+|+.+|++..+|..|.+||...
T Consensus 166 gLR~npdsp~Lw~eyfrmEL~~ 187 (568)
T KOG2396|consen 166 GLRFNPDSPKLWKEYFRMELMY 187 (568)
T ss_pred HhhcCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999864
|
|
| >PRK09521 exosome complex RNA-binding protein Csl4; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.8e-06 Score=94.24 Aligned_cols=75 Identities=31% Similarity=0.435 Sum_probs=67.8
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEeC----------CCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEE
Q 000176 1363 EDLSPNMIVQGYVKNVTSKGCFIMLS----------RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432 (1924)
Q Consensus 1363 ~~lk~G~~v~G~V~~v~~~G~fV~l~----------~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri 1432 (1924)
..+++|++|.|+|+++.++|+||+|. .+..|++|++++++.+..++.+.|++||.|.|+|++++ +++
T Consensus 60 ~~~~~GdiV~GkV~~i~~~g~~V~I~~~~~~~~~l~~~~~G~l~~s~i~~~~~~~~~~~~~~GD~V~akV~~i~---~~i 136 (189)
T PRK09521 60 PLLKKGDIVYGRVVDVKEQRALVRIVSIEGSERELATSKLAYIHISQVSDGYVESLTDAFKIGDIVRAKVISYT---DPL 136 (189)
T ss_pred CCCCCCCEEEEEEEEEcCCeEEEEEEEecccccccCCCceeeEEhhHcChhhhhhHHhccCCCCEEEEEEEecC---CcE
Confidence 34689999999999999999999984 46899999999999988888999999999999999998 789
Q ss_pred EEEeeccc
Q 000176 1433 EVTLKTSD 1440 (1924)
Q Consensus 1433 ~LSlk~~~ 1440 (1924)
.||+|...
T Consensus 137 ~LS~k~~~ 144 (189)
T PRK09521 137 QLSTKGKD 144 (189)
T ss_pred EEEEecCC
Confidence 99998643
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.4e-05 Score=84.51 Aligned_cols=158 Identities=11% Similarity=0.047 Sum_probs=131.9
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 000176 1718 VAYFNLENEYGNPPEEAVVKVFQR-ALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ 1796 (1924)
Q Consensus 1718 iayl~le~~~g~~~~e~a~~vfer-Al~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~ 1796 (1924)
..+.+.+...|. .+....+... ++.+..+..+...++....+.|++..|...|.++....|++..+|...+-.|.+.
T Consensus 70 ~~~a~a~~~~G~--a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGD--ADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhccc--ccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 555666666663 2444444444 4444444577777999999999999999999999999999999999999999999
Q ss_pred -CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 000176 1797 -QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLF 1875 (1924)
Q Consensus 1797 -~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lf 1875 (1924)
+++.|+..|.++++..|... .+..++|..++-.|+++.|++++..+-..-+.+..+-..++......|+++.|+.+-
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p--~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEP--SIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccCCc--hhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 99999999999999999885 899999999999999999999999998888888899999999999999999999887
Q ss_pred HHHH
Q 000176 1876 ERAI 1879 (1924)
Q Consensus 1876 eral 1879 (1924)
..-+
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 6533
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00021 Score=91.79 Aligned_cols=224 Identities=14% Similarity=0.139 Sum_probs=156.7
Q ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhcCCcchhhH-----------HHHHH
Q 000176 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSM-----ADVEKARSIAERALQTINIREENEK-----------LNIWV 1718 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~-----~e~dkAr~v~eraL~~i~~~ee~ek-----------l~lWi 1718 (1924)
++..+|...|..+|..||++...+..|..+.... .+.+...++|+......|...-..+ ...--
T Consensus 52 g~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~ 131 (517)
T PF12569_consen 52 GRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLD 131 (517)
T ss_pred CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHH
Confidence 5678899999999999999999999998887322 3577778888877655543221111 12333
Q ss_pred HHHHHHHHcCCC-----------CHHH---HHHHHHHHH---hcC------------CC-HHHH--HHHHHHHHHhCChH
Q 000176 1719 AYFNLENEYGNP-----------PEEA---VVKVFQRAL---QYC------------DP-KKVH--LALLGLYERTEQNK 1766 (1924)
Q Consensus 1719 ayl~le~~~g~~-----------~~e~---a~~vferAl---~~~------------~~-~~i~--~~l~~i~~~~gk~e 1766 (1924)
.|+.-.+.-|-| +.++ ..++++.-+ +.+ ++ .-+| +-++..|...|+++
T Consensus 132 ~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~ 211 (517)
T PF12569_consen 132 EYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYE 211 (517)
T ss_pred HHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHH
Confidence 455444444432 1122 222222222 111 11 2356 55688999999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1767 LADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGIL 1845 (1924)
Q Consensus 1767 ~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL 1845 (1924)
+|.+..++++..-|..+++|+..|.++... ++.+|.+.++.|-...+.+. -+=.+.+...++.|+++.|..++....
T Consensus 212 ~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR--yiNsK~aKy~LRa~~~e~A~~~~~~Ft 289 (517)
T PF12569_consen 212 KALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR--YINSKCAKYLLRAGRIEEAEKTASLFT 289 (517)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH--HHHHHHHHHHHHCCCHHHHHHHHHhhc
Confidence 999999999999999999999999999999 99999999999999987774 577888889999999999999998876
Q ss_pred HhC--CC-CHH----HHHHHHHHHH--HcCCHHHHHHHHHHHHh
Q 000176 1846 SEY--PK-RTD----LWSIYLDQEI--RLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1846 ~~~--Pk-~~d----lw~~y~~le~--k~gd~~~ar~lferal~ 1880 (1924)
+.. |. +.. +|+..-.-+. +.|++..|...|..+..
T Consensus 290 r~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 290 REDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 654 21 111 4554444443 56777777777766554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.4e-05 Score=84.07 Aligned_cols=171 Identities=11% Similarity=0.028 Sum_probs=143.0
Q ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC
Q 000176 1735 VVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1812 (1924)
Q Consensus 1735 a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~ 1812 (1924)
+...+-++...+|. ..+ ..+...|...|+-+.+..+.....-.++.+..+...++..+++. ++..|...|.++....
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 44444455555554 477 88889999999998888888888888888888888899999999 9999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHH
Q 000176 1813 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1892 (1924)
Q Consensus 1813 p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw 1892 (1924)
|.+ ..+|...|-.+.+.|+.+.||.-|.++++..|....+.+.++..+.-.|+++.|+.++.++.. .++.+. .+-
T Consensus 131 p~d--~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l--~~~ad~-~v~ 205 (257)
T COG5010 131 PTD--WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL--SPAADS-RVR 205 (257)
T ss_pred CCC--hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh--CCCCch-HHH
Confidence 887 599999999999999999999999999999999999999999999999999999999999998 555444 344
Q ss_pred HHHHHHHHHcCCHHHHHHH
Q 000176 1893 KKYLEYEKSVGEEERIEYV 1911 (1924)
Q Consensus 1893 ~~yl~~E~~~G~~~~~~~v 1911 (1924)
....-.-..+|++..++.+
T Consensus 206 ~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 206 QNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHhhcCChHHHHhh
Confidence 4444444556777776654
|
|
| >cd05699 S1_Rrp5_repeat_hs7 S1_Rrp5_repeat_hs7: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=98.21 E-value=4e-06 Score=76.09 Aligned_cols=62 Identities=18% Similarity=0.328 Sum_probs=56.6
Q ss_pred ccEEEEEEEEEecceeEEEeccCCceeEEEeeeecCCc---------ccccCCeE-EEEEEEeeccccEEEEeec
Q 000176 875 GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA---------TVESGSVI-QAAILDVAKAERLVDLSLK 939 (1924)
Q Consensus 875 G~~v~g~V~~i~~~g~~v~l~~~~~v~g~i~~~~l~~~---------~~~~G~~v-~~~Vl~vd~~~~~v~ls~k 939 (1924)
|++|+|+|.++++++++|+++++ ++.|++|..||+|+ ++++||++ .++|| +...+.+.+|.|
T Consensus 1 G~lV~~~V~EKt~D~l~v~l~~~-~l~a~l~~~HLsD~~~k~~~~~~klrvG~~L~~~lvL--~~~~r~i~lt~K 72 (72)
T cd05699 1 GKLVDARVLKKTLNGLEVAILPE-EIRAFLPTMHLSDHVSNCPLLWHCLQEGDTIPNLMCL--SNYKGRIILTKK 72 (72)
T ss_pred CceEEEEEEEEcCCcEEEEecCC-CcEEEEEccccCCchhhCHHHHhhhhcCCCccceEEE--eccccEEEEecC
Confidence 78999999999999999999987 89999999999983 79999999 77788 889999988865
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 7 (hs7). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.3e-05 Score=89.48 Aligned_cols=118 Identities=18% Similarity=0.143 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc----CHHHHHHHHH
Q 000176 1732 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ----QQEGVQAVVQ 1806 (1924)
Q Consensus 1732 ~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~----~~~~A~~l~~ 1806 (1924)
.+....-++.-++.+|.+ +-|..|+.+|...+++..|...|.++.+.-++++.+|..|++.++.+ ...+++.+|.
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 577778889999999987 99999999999999999999999999999999999999999999887 6788999999
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000176 1807 RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1851 (1924)
Q Consensus 1807 ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~ 1851 (1924)
++++..|.+ +...+.+|.-+|+.|++.+|...++..|...|.+
T Consensus 218 ~al~~D~~~--iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 218 QALALDPAN--IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHhcCCcc--HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 999998877 7899999999999999999999999999999876
|
|
| >PRK04163 exosome complex RNA-binding protein Rrp4; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.2e-06 Score=96.82 Aligned_cols=77 Identities=26% Similarity=0.388 Sum_probs=68.9
Q ss_pred cCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccc----cCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV----DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~----~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
.++||+|.|+|+++.++|+||.|.. ...|++|++++++.++ .+....|++||.|+|+|++++++ +++.||+|..
T Consensus 61 P~vGDiViG~V~~i~~~~~~vdI~~-~~~g~L~~s~i~~~~~~~d~~~~~~~~~~GDlV~akV~~i~~~-~~~~LS~k~~ 138 (235)
T PRK04163 61 PKVGDLVIGKVTDVTFSGWEVDINS-PYKAYLPVSEVLGRPVNVEGTDLRKYLDIGDYIIAKVKDVDRT-RDVVLTLKGK 138 (235)
T ss_pred CCCCCEEEEEEEEEeCceEEEEeCC-CceeEEEHHHcCCCccccchhhhHhhCCCCCEEEEEEEEECCC-CcEEEEEcCC
Confidence 4799999999999999999999975 7999999999999876 67888999999999999999964 4599999987
Q ss_pred ccC
Q 000176 1531 YFK 1533 (1924)
Q Consensus 1531 ~~~ 1533 (1924)
++.
T Consensus 139 ~lG 141 (235)
T PRK04163 139 GLG 141 (235)
T ss_pred CCC
Confidence 663
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00014 Score=88.38 Aligned_cols=131 Identities=9% Similarity=0.062 Sum_probs=117.0
Q ss_pred CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 000176 1780 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY 1858 (1924)
Q Consensus 1780 ~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y 1858 (1924)
+.....|+-.+.-.+.. ++++|+..+...++..|++ +-+|...++++++.++.++|.+.|++++..+|...-+|..|
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N--~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~ 380 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN--PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNL 380 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHH
Confidence 56788899888888888 9999999999999999987 58899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000176 1859 LDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKA 1915 (1924)
Q Consensus 1859 ~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rA 1915 (1924)
++.+++.|++.+|..++.+.+. ..|.++ ..|....+-+...|+..++...+..+
T Consensus 381 a~all~~g~~~eai~~L~~~~~--~~p~dp-~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLF--NDPEDP-NGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhh--cCCCCc-hHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 9999999999999999999998 666777 68999998888899877766554433
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00074 Score=80.38 Aligned_cols=225 Identities=15% Similarity=0.156 Sum_probs=171.2
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCc-chhhHHHHHHHHHH
Q 000176 1644 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIR-EENEKLNIWVAYFN 1722 (1924)
Q Consensus 1644 ~~~~~e~~~~~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~-ee~ekl~lWiayl~ 1722 (1924)
+++..+.-+...+.|.+..-.+.++...|.+..+-.--.++|.+.|++...-.+....-+.--.+ +|..++.-| +|..
T Consensus 156 ~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~-a~~g 234 (400)
T COG3071 156 ELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQ-AWEG 234 (400)
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHH-HHHH
Confidence 56777776667779999999999999999999999999999999999999988887776643332 344444333 3333
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-
Q 000176 1723 LENEYGNPPEEAVVKVFQRALQYCDP-----KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ- 1796 (1924)
Q Consensus 1723 le~~~g~~~~e~a~~vferAl~~~~~-----~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~- 1796 (1924)
+..+..+ .+-+.. +..-.+..|. -++-..|+.-+.+.|.+++|.++.+.++++.-+. . +..++-..
T Consensus 235 lL~q~~~--~~~~~g-L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-~----L~~~~~~l~ 306 (400)
T COG3071 235 LLQQARD--DNGSEG-LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP-R----LCRLIPRLR 306 (400)
T ss_pred HHHHHhc--cccchH-HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh-h----HHHHHhhcC
Confidence 3333331 111111 2222333332 2788899999999999999999999999875333 2 22333222
Q ss_pred --CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 000176 1797 --QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGL 1874 (1924)
Q Consensus 1797 --~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~l 1874 (1924)
++..-.+..++.++..|.+. .+++.+|+++++++.+.+|.+.|+.+++.-|.- .-|...++.+.+.|+...|.++
T Consensus 307 ~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~ 383 (400)
T COG3071 307 PGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQV 383 (400)
T ss_pred CCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHH
Confidence 78888889999999999884 899999999999999999999999999877764 5677788999999999999999
Q ss_pred HHHHHh
Q 000176 1875 FERAIS 1880 (1924)
Q Consensus 1875 feral~ 1880 (1924)
++.++.
T Consensus 384 r~e~L~ 389 (400)
T COG3071 384 RREALL 389 (400)
T ss_pred HHHHHH
Confidence 999986
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.8e-05 Score=88.12 Aligned_cols=260 Identities=14% Similarity=0.100 Sum_probs=167.6
Q ss_pred CCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcch--hhHHHHHHHHHHH---HHHcCCC
Q 000176 1656 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREE--NEKLNIWVAYFNL---ENEYGNP 1730 (1924)
Q Consensus 1656 ~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee--~ekl~lWiayl~l---e~~~g~~ 1730 (1924)
...++...|..++...|+++..|..-++.++..++++.|.--++..++.-+.+.- .+--+...+..++ +..+.++
T Consensus 64 ~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~ 143 (486)
T KOG0550|consen 64 TYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSK 143 (486)
T ss_pred hHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhhh
Confidence 3567888999999999999999999999999999999999999888865553210 0001122222221 1111111
Q ss_pred CHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHH
Q 000176 1731 PEEAVVKVFQRALQYCDP-------KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQ 1802 (1924)
Q Consensus 1731 ~~e~a~~vferAl~~~~~-------~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~ 1802 (1924)
+.-.+...|.+.-...+. ...-+.-+..+...+.+..|.+.--..++..+.+....+..+..+... +.+.|.
T Consensus 144 ~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~ 223 (486)
T KOG0550|consen 144 QAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAI 223 (486)
T ss_pred hhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHH
Confidence 101111111111111111 133333444667778888888888888877777777666666666666 888888
Q ss_pred HHHHHHHHhCCCCCh----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCH
Q 000176 1803 AVVQRALLSLPRHKH----------IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD----LWSIYLDQEIRLGDV 1868 (1924)
Q Consensus 1803 ~l~~ral~~~p~~~~----------~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d----lw~~y~~le~k~gd~ 1868 (1924)
..|+++|...|.+.. +..|..-|.-.|+.|++-.|.+.|-.+|..+|.+.. ++...+....+.|+.
T Consensus 224 ~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl 303 (486)
T KOG0550|consen 224 NHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRL 303 (486)
T ss_pred HHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCc
Confidence 888888888877533 356777777788888888888888888888887543 566666777788888
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1869 DLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1869 ~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
..|..-.++|+. +.+.-.+.+ .+-.....-.++++++.+-|++|++.
T Consensus 304 ~eaisdc~~Al~--iD~syikal-l~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 304 REAISDCNEALK--IDSSYIKAL-LRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hhhhhhhhhhhh--cCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888888887 666544322 22222233334566666666666653
|
|
| >cd04460 S1_RpoE S1_RpoE: RpoE, S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.4e-06 Score=82.38 Aligned_cols=76 Identities=20% Similarity=0.429 Sum_probs=65.4
Q ss_pred CEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCC-----------CCccCCCCcEEEEEEEEEeCCC-----CEE
Q 000176 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES-----------PEKEFPIGKLVAGRVLSVEPLS-----KRV 1432 (1924)
Q Consensus 1369 ~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~-----------~~~~f~~G~~V~~kVl~vd~e~-----~ri 1432 (1924)
+++.|.|+.+.++|+||+|. +++|++|++++++.+... +...|++||.|+++|.++|.+. +++
T Consensus 1 ~vv~g~V~~i~~~GifV~l~-~v~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Gd~v~vkI~~vd~~~~~~~~~~i 79 (99)
T cd04460 1 EVVEGEVVEVVDFGAFVRIG-PVDGLLHISQIMDDYISYDPKNKRLIGEETKRVLKVGDVVRARIVAVSLKERRPRESKI 79 (99)
T ss_pred CEEEEEEEEEEeccEEEEEc-CeEEEEEEEEccCCceEechhheeecccCcCCEECCCCEEEEEEEEEeHHHCcCCCceE
Confidence 47899999999999999998 599999999999876432 3578999999999999999764 589
Q ss_pred EEEeecccccccc
Q 000176 1433 EVTLKTSDSRTAS 1445 (1924)
Q Consensus 1433 ~LSlk~~~~~~~~ 1445 (1924)
.||++.....|+.
T Consensus 80 ~ls~k~~~~g~~~ 92 (99)
T cd04460 80 GLTMRQPGLGKLE 92 (99)
T ss_pred EEEEecCCCCcHH
Confidence 9999998876654
|
S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. RpoE is subunit E of archaeal RNA polymerase. Archaeal cells contain a single RNA polymerase made up of 12 subunits, which are homologous to the 12 subunits (RPB1-12) of eukaryotic RNA polymerase II. RpoE is homologous to Rpa43 of eukaryotic RNA polymerase I, RPB7 of eukaryotic RNA polymerase II, and Rpc25 of eukaryotic RNA polymerase III. RpoE is composed of two domains, the N-terminal RNP (ribonucleoprotein) domain and the C-terminal S1 domain. This S1 domain binds ssRNA and ssDNA. This family is classified based on the C-terminal S1 domain. The function of RpoE is not fully understood. In eukaryotes, RPB7 and RPB4 form a heterodimer that reversibly associates with the RNA polymerase II core. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00019 Score=76.33 Aligned_cols=141 Identities=14% Similarity=0.082 Sum_probs=122.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC
Q 000176 1739 FQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK-KFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1816 (1924)
Q Consensus 1739 ferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk-~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~ 1816 (1924)
..+++...|...-.+.+++.+...|++.+|...|+.++. .|.+++.+.+.+++..+.. ++..|...++......|...
T Consensus 79 a~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r 158 (251)
T COG4700 79 ATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR 158 (251)
T ss_pred HHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC
Confidence 334444456667788999999999999999999999886 6889999999999999999 99999999999999999887
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH----HHHHHHHHHHh
Q 000176 1817 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD----LIRGLFERAIS 1880 (1924)
Q Consensus 1817 ~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~----~ar~lferal~ 1880 (1924)
.++-...||..+...|.++.|++-||.++..+|. ......|+.|+.++|..+ +++++++++..
T Consensus 159 ~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 159 SPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 7889999999999999999999999999999997 467788999999999654 45677777776
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=4e-05 Score=95.23 Aligned_cols=107 Identities=14% Similarity=0.013 Sum_probs=91.7
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc
Q 000176 1753 LALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1831 (1924)
Q Consensus 1753 ~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~ 1831 (1924)
...+..+...+++++|.+.|++++...+.+..+|+.++..++.. ++++|...|++|+...|.+ ..+|..+|.+++..
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~--~~a~~~lg~~~~~l 83 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL--AKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHh
Confidence 34456667889999999999999999999999999999999999 9999999999999998876 58899999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000176 1832 GVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1861 (1924)
Q Consensus 1832 g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~l 1861 (1924)
|+++.|...|++++...|++..++......
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999987764444433
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.7e-05 Score=75.19 Aligned_cols=96 Identities=19% Similarity=0.137 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 000176 1752 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1830 (1924)
Q Consensus 1752 ~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~ 1830 (1924)
|+.++.++...+++++|...|+++++..+....+|..++..+... ++++|...|++++...|... .+|..+|.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA--KAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch--hHHHHHHHHHHH
Confidence 444555555555555555555555555544445555555555555 55555555555555544432 445555555555
Q ss_pred cCCHHHHHHHHHHHHHhCC
Q 000176 1831 NGVADRGRSMFEGILSEYP 1849 (1924)
Q Consensus 1831 ~g~~e~Ar~lfe~aL~~~P 1849 (1924)
.|+++.|...|++++...|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 5555555555555554443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00036 Score=81.74 Aligned_cols=184 Identities=11% Similarity=-0.010 Sum_probs=132.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH----
Q 000176 1674 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK---- 1749 (1924)
Q Consensus 1674 s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~---- 1749 (1924)
+...|..-+.-+++.|++++|.+.|++++...|.+...+...+|++|+.+ ..+ +.+.|...|++.++..|..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy--~~~--~y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYY--KNA--DLPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHHhCcCCCchH
Confidence 55666677777788899999999999999988887665666677777665 456 3488999999999988863
Q ss_pred HHHHHHHHHHHHhC------------------ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 000176 1750 KVHLALLGLYERTE------------------QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLS 1811 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~g------------------k~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~~~~~A~~l~~ral~~ 1811 (1924)
.+++.++..+...+ ...+|...|++.++.||++.- ..+|+..+..+-..
T Consensus 107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y-------------a~~A~~rl~~l~~~ 173 (243)
T PRK10866 107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY-------------TTDATKRLVFLKDR 173 (243)
T ss_pred HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh-------------HHHHHHHHHHHHHH
Confidence 55666655432221 134677889999999987754 34444333333322
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1812 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT---DLWSIYLDQEIRLGDVDLIRGLFERAI 1879 (1924)
Q Consensus 1812 ~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~---dlw~~y~~le~k~gd~~~ar~lferal 1879 (1924)
+. .--...|.+|++.|.+..|..-|+.++..+|... +.....+..+.+.|..+.|........
T Consensus 174 la-----~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 LA-----KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HH-----HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 21 1233678899999999999999999999999854 456667788889999999988776544
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.1e-05 Score=77.61 Aligned_cols=103 Identities=10% Similarity=0.105 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHH
Q 000176 1751 VHLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTA 1825 (1924)
Q Consensus 1751 i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~---~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~-~~~~~~~~A 1825 (1924)
+++..+..+.+.+++++|.+.|++++..++++ ..+++.++..+.+. +++.|..+|++++...|.+. ...++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 45555666666666666666666666655443 44566666666666 66666666666666655542 134566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000176 1826 ILEFKNGVADRGRSMFEGILSEYPKRTD 1853 (1924)
Q Consensus 1826 ~le~~~g~~e~Ar~lfe~aL~~~Pk~~d 1853 (1924)
.++.+.|+++.|...|++++..+|++..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 6666666666666666666666665543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.08 E-value=8.5e-05 Score=80.08 Aligned_cols=118 Identities=16% Similarity=0.189 Sum_probs=93.0
Q ss_pred HhCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHH
Q 000176 1761 RTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVAD 1835 (1924)
Q Consensus 1761 ~~gk~e~A~~~fe~~lk~~~~~---~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~-~~~~~~~~A~le~~~g~~e 1835 (1924)
..++...+.+.++.+.+.++.+ ...++.++..++.. ++++|...|+.++...|... ...++..+|.+++..|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4778888888888988888877 56677788888888 99999999999988775432 1346778888889999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1836 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1879 (1924)
Q Consensus 1836 ~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal 1879 (1924)
.|...++.. ...+-....|...++++.+.|+++.|+..|++||
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999998763 3334455678888889999999999999998874
|
|
| >TIGR00448 rpoE DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.2e-05 Score=89.47 Aligned_cols=77 Identities=26% Similarity=0.576 Sum_probs=66.3
Q ss_pred CCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCccccc-----------CcccccCCCcEEEEEEEEEe-----cC
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-----------NIETIYRAGEKVKVKILKVD-----KE 1519 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~-----------~~~~~~~~Gd~Vk~~Vl~id-----~e 1519 (1924)
.+|+++.|+|++++++|+||+|+ .++|++|.+++.+++.. +....|+.||.|+++|+++| ++
T Consensus 80 ~~gEvv~G~V~~v~~~GifV~lg--~~~gi~~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~~~ 157 (179)
T TIGR00448 80 ELGEIVEGEVIEIVEFGAFVSLG--PFDGLFHVSQVTDDYCYYDPKESALIGKETKKVLDEGDKVRARIVALSLKDRRPE 157 (179)
T ss_pred cCCCEEEEEEEEEEeeEEEEEeC--CceEEEEcHHhCCCceEEccccceEEEccCCeEEcCCCEEEEEEEEEEccCCCCC
Confidence 46999999999999999999995 59999999999876532 12367999999999999998 67
Q ss_pred CCeeEEeccccccCC
Q 000176 1520 KRRISLGMKSSYFKN 1534 (1924)
Q Consensus 1520 ~~ri~lslK~s~~~~ 1534 (1924)
..+|.+|||+.|...
T Consensus 158 ~~~I~lt~k~~~LG~ 172 (179)
T TIGR00448 158 GSKIGLTMRQPLLGK 172 (179)
T ss_pred cceEEEEeccCcCCc
Confidence 889999999988744
|
This family seems to be confined to the archea and eukaryotic taxa and are quite dissimilar to E.coli rpoE. |
| >TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.3e-06 Score=110.06 Aligned_cols=71 Identities=23% Similarity=0.423 Sum_probs=66.0
Q ss_pred CccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEE
Q 000176 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828 (1924)
Q Consensus 757 ~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~l 828 (1924)
.+.++|+++.|.|++|+++|+||++++++.||+|.|++++.++.++.+.|++||.|+|+|+++|. ++|+.|
T Consensus 614 ~~~~~G~i~~G~V~~I~~~GafVei~~g~~GllHiSei~~~~v~~~~~~~kvGD~V~VkVi~id~-~gki~L 684 (684)
T TIGR03591 614 AEPEVGKIYEGKVVRIMDFGAFVEILPGKDGLVHISEIANERVEKVEDVLKEGDEVKVKVLEIDK-QGRIKL 684 (684)
T ss_pred cccccCcEEEEEEEEEeCCEEEEEECCCcEEEEEHHHcCCCcccChhhccCCCCEEEEEEEEECC-CCCccC
Confidence 35788999999999999999999999999999999999999999999999999999999999998 677654
|
Members of this protein family are polyribonucleotide nucleotidyltransferase, also called polynucleotide phosphorylase. Some members have been shown also to have additional functions as guanosine pentaphosphate synthetase and as poly(A) polymerase (see model TIGR02696 for an exception clade, within this family). |
| >cd04455 S1_NusA S1_NusA: N-utilizing substance A protein (NusA), S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.7e-05 Score=73.01 Aligned_cols=63 Identities=21% Similarity=0.279 Sum_probs=54.6
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCC--CEEEEE
Q 000176 1366 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS--KRVEVT 1435 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~--~ri~LS 1435 (1924)
+.|++|+|+|.++++.|+||+++. .+|++|.++++. .+.|++|+.|++.|++++.++ .+|.||
T Consensus 2 ~~g~iV~G~V~~~~~~~~~vdig~-~eg~lp~~e~~~------~~~~~~Gd~v~v~v~~v~~~~~~~~i~lS 66 (67)
T cd04455 2 REGEIVTGIVKRVDRGNVIVDLGK-VEAILPKKEQIP------GESYRPGDRIKAYVLEVRKTSKGPQIILS 66 (67)
T ss_pred CCCCEEEEEEEEEcCCCEEEEcCC-eEEEeeHHHCCC------CCcCCCCCEEEEEEEEEecCCCCCEEEEe
Confidence 479999999999999999999985 999999999873 456899999999999999654 357766
|
S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. NusA is a transcription elongation factor containing an N-terminal catalytic domain and three RNA binding domains (RBD's). The RBD's include one S1 domain and two KH domains that form an RNA binding surface. DNA transcription by RNA polymerase (RNAP) includes three phases - initiation, elongation, and termination. During initiation, sigma factors bind RNAP and target RNAP to specific promoters. During elongation, N-utilization substances (NusA, B, E, and G) replace sigma factors and regulate pausing, termination, and antitermination. NusA is cold-shock-inducible. |
| >cd04455 S1_NusA S1_NusA: N-utilizing substance A protein (NusA), S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.5e-05 Score=73.47 Aligned_cols=63 Identities=19% Similarity=0.403 Sum_probs=54.6
Q ss_pred CCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCC--CeEEEe
Q 000176 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET--GRITLS 829 (1924)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~--~r~~lS 829 (1924)
+.|+++.|.|.+++++|+||.+. +..||+|+++++ +.+.|++|+.|++.|++++.++ ..+.||
T Consensus 2 ~~g~iV~G~V~~~~~~~~~vdig-~~eg~lp~~e~~------~~~~~~~Gd~v~v~v~~v~~~~~~~~i~lS 66 (67)
T cd04455 2 REGEIVTGIVKRVDRGNVIVDLG-KVEAILPKKEQI------PGESYRPGDRIKAYVLEVRKTSKGPQIILS 66 (67)
T ss_pred CCCCEEEEEEEEEcCCCEEEEcC-CeEEEeeHHHCC------CCCcCCCCCEEEEEEEEEecCCCCCEEEEe
Confidence 46999999999999999999995 599999999986 3457899999999999999765 357776
|
S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. NusA is a transcription elongation factor containing an N-terminal catalytic domain and three RNA binding domains (RBD's). The RBD's include one S1 domain and two KH domains that form an RNA binding surface. DNA transcription by RNA polymerase (RNAP) includes three phases - initiation, elongation, and termination. During initiation, sigma factors bind RNAP and target RNAP to specific promoters. During elongation, N-utilization substances (NusA, B, E, and G) replace sigma factors and regulate pausing, termination, and antitermination. NusA is cold-shock-inducible. |
| >PRK04163 exosome complex RNA-binding protein Rrp4; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=3e-05 Score=89.76 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=64.5
Q ss_pred CCCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCCCC----CCCCCCCCCCCEEEEEEEEEcCCCCEEEEEEee
Q 000176 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPG----CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656 (1924)
Q Consensus 584 ~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~~~----~~~~~~~~vGq~v~~rVl~vd~~~~ri~lS~k~ 656 (1924)
++|+++.|.|+++.++|++|++..+..|+||.+++++..+ .++.+.|++|+.|.|+|+++++++ .+.|||+.
T Consensus 62 ~vGDiViG~V~~i~~~~~~vdI~~~~~g~L~~s~i~~~~~~~d~~~~~~~~~~GDlV~akV~~i~~~~-~~~LS~k~ 137 (235)
T PRK04163 62 KVGDLVIGKVTDVTFSGWEVDINSPYKAYLPVSEVLGRPVNVEGTDLRKYLDIGDYIIAKVKDVDRTR-DVVLTLKG 137 (235)
T ss_pred CCCCEEEEEEEEEeCceEEEEeCCCceeEEEHHHcCCCccccchhhhHhhCCCCCEEEEEEEEECCCC-cEEEEEcC
Confidence 5799999999999999999999889999999999987654 577788999999999999999764 49999964
|
|
| >PRK09202 nusA transcription elongation factor NusA; Validated | Back alignment and domain information |
|---|
Probab=98.05 E-value=5.5e-06 Score=104.08 Aligned_cols=107 Identities=21% Similarity=0.296 Sum_probs=82.7
Q ss_pred CCCCCCEEEEEEEEEeCCeE-EEEEccccccchh-----hHhhhhcccCCCcEEEEEEEEEEcceEEEEEcCCeEEEeeC
Q 000176 542 KFKVGAELVFRVLGVKSKRI-TVTHKKTLVKSKL-----AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615 (1924)
Q Consensus 542 ~f~vG~~vk~rVl~v~~~~l-~lT~K~~Lv~~~~-----~~~~~~~~~~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~ 615 (1924)
.+++|+.+++.|...+-+|+ ..+.|+.+..... .++..|.+ +.|+++.|+|.++.++|+||++ |++.||||.
T Consensus 86 ~~~vGD~ie~~I~~~~fgRia~q~aKq~i~Qkire~ere~i~~eyk~-~~GeIV~G~V~ri~~~giiVDL-ggvea~LP~ 163 (470)
T PRK09202 86 DAEVGDYIEEEIESVDFGRIAAQTAKQVIVQKIREAERERVYEEYKD-RVGEIITGVVKRVERGNIIVDL-GRAEAILPR 163 (470)
T ss_pred cccCCCeEEEEEccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCEEEEEEEEEecCCEEEEE-CCeEEEecH
Confidence 48999999998877643333 3334444433222 22233321 3799999999999999999999 789999999
Q ss_pred cccCCCCCCCCCCCCCCCCEEEEEEEEEcCCCC--EEEEEEee
Q 000176 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR--RINLSFMM 656 (1924)
Q Consensus 616 sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~~--ri~lS~k~ 656 (1924)
+++. |.+.|++|+.++|.|+++|.+++ ++.||.+.
T Consensus 164 sE~i------p~E~~~~GdrIka~I~~Vd~~~kg~qIilSRt~ 200 (470)
T PRK09202 164 KEQI------PRENFRPGDRVRAYVYEVRKEARGPQIILSRTH 200 (470)
T ss_pred HHcC------CCccCCCCCEEEEEEEEEecCCCCCeEEEEeCc
Confidence 9995 66889999999999999999877 99999864
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00072 Score=83.08 Aligned_cols=200 Identities=14% Similarity=0.067 Sum_probs=111.7
Q ss_pred CCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHH-HHHHHHHH---HHHcCCCC
Q 000176 1656 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN-IWVAYFNL---ENEYGNPP 1731 (1924)
Q Consensus 1656 ~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~-lWiayl~l---e~~~g~~~ 1731 (1924)
..+.+...|..++..+ .+.......++.++..+.+++.+...+.|++.-- +.-+..+ |-.++..+ ....+ +
T Consensus 239 ~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr--e~rad~klIak~~~r~g~a~~k~~--~ 313 (539)
T KOG0548|consen 239 DFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR--ELRADYKLIAKALARLGNAYTKRE--D 313 (539)
T ss_pred hHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH--HHHHHHHHHHHHHHHhhhhhhhHH--h
Confidence 3788899999999988 8888999999999999999999998888875421 1111111 11222221 12223 3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHH---------------------------HHHHHHHhCChHHHHHHHHHHHHhcCCCHH
Q 000176 1732 EEAVVKVFQRALQYCDPKKVHLA---------------------------LLGLYERTEQNKLADELLYKMIKKFKHSCK 1784 (1924)
Q Consensus 1732 ~e~a~~vferAl~~~~~~~i~~~---------------------------l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~ 1784 (1924)
.+.+...|++++......++... -++-+.+.|+|..|...|.+++++.|++..
T Consensus 314 ~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 314 YEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence 47788888888765433111111 112233445555555555555555555555
Q ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000176 1785 VWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1862 (1924)
Q Consensus 1785 vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le 1862 (1924)
+|.+.+..+.+. .+..|..-.+.+++..|.. +..|.+-|..++.+.+++.|...|+.++..+|++..+...|.+..
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~--~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELDPNF--IKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCV 470 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 555555555555 5555555555555554443 345555555555555555555555555555555544444443333
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00028 Score=87.83 Aligned_cols=216 Identities=16% Similarity=0.093 Sum_probs=161.3
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1736 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~ 1736 (1924)
..+|-+...+.++.++.|..-|.-|+-.+-...++++|.+.|..||+.-+. .+.+|-.+.-|..+.+ +.+-..
T Consensus 57 ~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-----N~qilrDlslLQ~QmR--d~~~~~ 129 (700)
T KOG1156|consen 57 KEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-----NLQILRDLSLLQIQMR--DYEGYL 129 (700)
T ss_pred hHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHHH--hhhhHH
Confidence 445555666788889999999999999999999999999999999976553 3579998888888888 448888
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC
Q 000176 1737 KVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKF--KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1812 (1924)
Q Consensus 1737 ~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~--~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~ 1812 (1924)
..-.+.++..|.. .-|+.++..+.-.|.+..|..+.+...+.. +.+...+-..-.++.+. ...++- .++.+++.+
T Consensus 130 ~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g-~~q~ale~L 208 (700)
T KOG1156|consen 130 ETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAG-SLQKALEHL 208 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcc-cHHHHHHHH
Confidence 8999999999875 889999999999999999999988887755 34555555554555544 222221 145555544
Q ss_pred CCCC-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHh
Q 000176 1813 PRHK-----HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR-GLFERAIS 1880 (1924)
Q Consensus 1813 p~~~-----~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar-~lferal~ 1880 (1924)
-... .+.+...-|.++++.+++|+|..+|..++..+|++.+.+..|...+.+-.+.-++. .+|.+.-.
T Consensus 209 ~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 209 LDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred HhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 3221 13456666788899999999999999999999999887777776665333333333 66666544
|
|
| >TIGR02063 RNase_R ribonuclease R | Back alignment and domain information |
|---|
Probab=98.03 E-value=1e-05 Score=109.14 Aligned_cols=76 Identities=32% Similarity=0.649 Sum_probs=66.0
Q ss_pred ccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccc-----------cCcccccCCCcEEEEEEEEEecCC
Q 000176 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------DNIETIYRAGEKVKVKILKVDKEK 1520 (1924)
Q Consensus 1452 ~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~-----------~~~~~~~~~Gd~Vk~~Vl~id~e~ 1520 (1924)
+..-++|+++.|+|++|++||+||+|.+.+++||+|+|++++++. .+....|++||.|+|+|+++|.++
T Consensus 622 yl~~~iG~~~~g~V~~v~~fGifV~L~~~~~eGlvhis~l~~d~~~~d~~~~~l~g~~~~~~~~lGd~V~Vkv~~vd~~~ 701 (709)
T TIGR02063 622 YMSEKIGEEFEGVISGVTSFGLFVELENNTIEGLVHISTLKDDYYVFDEKGLALVGERTGKVFRLGDRVKVRVVKADLDT 701 (709)
T ss_pred hhhccCCcEEEEEEEEEEeCCEEEEecCCceEEEEEeeecCCCcEEEcccceEEEeccCCcEECCCCEEEEEEEEEeccc
Confidence 445578999999999999999999998657999999999987643 223467999999999999999999
Q ss_pred CeeEEec
Q 000176 1521 RRISLGM 1527 (1924)
Q Consensus 1521 ~ri~lsl 1527 (1924)
++|.|++
T Consensus 702 ~~I~~~l 708 (709)
T TIGR02063 702 GKIDFEL 708 (709)
T ss_pred CeEEEEE
Confidence 9999986
|
This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. |
| >COG1095 RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.2e-05 Score=86.09 Aligned_cols=77 Identities=30% Similarity=0.591 Sum_probs=64.1
Q ss_pred CCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCccccc----------C-cccccCCCcEEEEEEEEEecCC----
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD----------N-IETIYRAGEKVKVKILKVDKEK---- 1520 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~----------~-~~~~~~~Gd~Vk~~Vl~id~e~---- 1520 (1924)
-.|++|+|.|+++.+||+||.|++ .+||+|+|++.|+++. . -...+++||.|+++|+.+....
T Consensus 80 ~~gEVV~GeVv~~~~~G~fV~igp--~dglvh~sqi~dd~~~~d~~~~~~~g~~tk~~i~~gd~VR~RIv~~s~~~~~~~ 157 (183)
T COG1095 80 FRGEVVEGEVVEVVEFGAFVRIGP--LDGLVHVSQIMDDYIDYDEKNKVLIGEETKRVLKVGDKVRARIVGVSLKSRRPR 157 (183)
T ss_pred ccccEEEEEEEEEeecceEEEecc--ccccccHhhccCcccccCcccceeeecccceEEecCCEEEEEEEEEecccCccc
Confidence 358899999999999999999974 9999999999998441 1 2237999999999999998665
Q ss_pred -CeeEEeccccccCC
Q 000176 1521 -RRISLGMKSSYFKN 1534 (1924)
Q Consensus 1521 -~ri~lslK~s~~~~ 1534 (1924)
.+|.++||+.+...
T Consensus 158 ~~~I~lTmrq~~LGk 172 (183)
T COG1095 158 ESKIGLTMRQPGLGK 172 (183)
T ss_pred cceEEEEeccccCCc
Confidence 57889999877643
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00021 Score=87.48 Aligned_cols=147 Identities=20% Similarity=0.272 Sum_probs=116.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhc-C------------HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHH
Q 000176 1771 LLYKMIKKFKHSCKVWLRRVQRLLKQ-Q------------QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1837 (1924)
Q Consensus 1771 ~fe~~lk~~~~~~~vw~~~a~~l~~~-~------------~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~A 1837 (1924)
-|++.++..|.+.+.|+.|+.+.-.. . .+....+|++||+.+|.+ ..++..|.....+..+.+..
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~--~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDS--ERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHH
Confidence 35555556666666666666655443 1 466778999999999866 58999999988888899999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhc-----CCC----------chhHHHHHHHHHHHH
Q 000176 1838 RSMFEGILSEYPKRTDLWSIYLDQEIRL---GDVDLIRGLFERAISL-----SLP----------PKKMKFLFKKYLEYE 1899 (1924)
Q Consensus 1838 r~lfe~aL~~~Pk~~dlw~~y~~le~k~---gd~~~ar~lferal~~-----~~~----------pk~~k~lw~~yl~~E 1899 (1924)
...+++++..+|....+|..|+++.... -.+...+.+|.+++.. .-. ...+-.++.++..|.
T Consensus 85 ~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl 164 (321)
T PF08424_consen 85 AKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFL 164 (321)
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998763 3688999999999972 000 123446799999999
Q ss_pred HHcCCHHHHHHHHHHHHHHH
Q 000176 1900 KSVGEEERIEYVKQKAMEYV 1919 (1924)
Q Consensus 1900 ~~~G~~~~~~~v~~rAle~v 1919 (1924)
...|-.+.|-.+++-.+||-
T Consensus 165 ~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 165 RQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHCCchHHHHHHHHHHHHHH
Confidence 99999999999999988874
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00013 Score=93.91 Aligned_cols=191 Identities=15% Similarity=0.109 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000176 1715 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1793 (1924)
Q Consensus 1715 ~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l 1793 (1924)
..|.+|... .. ..+-+...|=||++..+.. ..|..|+.+|....+..+|...|.++....+.....|-..+..+
T Consensus 462 ~~w~a~~~~---rK--~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adty 536 (1238)
T KOG1127|consen 462 EFWVALGCM---RK--NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTY 536 (1238)
T ss_pred HHHHHHHHh---hh--hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHh
Confidence 456666544 12 2477889999999998886 99999999999999999999999999999999999999999999
Q ss_pred Hhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 000176 1794 LKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR 1872 (1924)
Q Consensus 1794 ~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar 1872 (1924)
.+. ..+.|..+.-++-+..|.......|...+-+|.+.++.-.|..-|+.+|+..|++...|.-++..|-..|.+..|.
T Consensus 537 ae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~Al 616 (1238)
T KOG1127|consen 537 AEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHAL 616 (1238)
T ss_pred hccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHH
Confidence 999 9999999988888877776555788888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHH--HHHHHcCCHHHHHHHHHHH
Q 000176 1873 GLFERAISLSLPPKKMKFLFKKYL--EYEKSVGEEERIEYVKQKA 1915 (1924)
Q Consensus 1873 ~lferal~~~~~pk~~k~lw~~yl--~~E~~~G~~~~~~~v~~rA 1915 (1924)
..|.+|.. +.|... |-+|- .+|...|.++.+...+...
T Consensus 617 KvF~kAs~--LrP~s~---y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 617 KVFTKASL--LRPLSK---YGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred HhhhhhHh--cCcHhH---HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999998 666433 33433 4677788888876655443
|
|
| >PRK09202 nusA transcription elongation factor NusA; Validated | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.3e-06 Score=104.17 Aligned_cols=119 Identities=17% Similarity=0.247 Sum_probs=90.0
Q ss_pred ccCCCCeEeeEEEeecCCCeEEEEecccccchhcc--CCCCcCccC--CCCEEEEEEEEEecCeEEEEECCCeEEEecCC
Q 000176 717 VIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIH--PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS 792 (1924)
Q Consensus 717 ~~~~G~~i~~vl~id~~~~~i~ls~K~sl~~~~~~--~~~~~~~~~--~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s 792 (1924)
.+++|+.+...+....-++....+.|+.+...+.. --.-|+.++ .|+++.|+|.+++++|+||.+ |++.||+|++
T Consensus 86 ~~~vGD~ie~~I~~~~fgRia~q~aKq~i~Qkire~ere~i~~eyk~~~GeIV~G~V~ri~~~giiVDL-ggvea~LP~s 164 (470)
T PRK09202 86 DAEVGDYIEEEIESVDFGRIAAQTAKQVIVQKIREAERERVYEEYKDRVGEIITGVVKRVERGNIIVDL-GRAEAILPRK 164 (470)
T ss_pred cccCCCeEEEEEccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEEEEecCCEEEEE-CCeEEEecHH
Confidence 57899999843322223333455566666554431 111245565 799999999999999999999 7899999999
Q ss_pred ccCcccccCcccCCCCCCEEEEEEEEeeCCCC--eEEEeecccccCCCchhhHHHHHHH
Q 000176 793 KAVDGQRADLSKTYYVGQSVRSNILDVNSETG--RITLSLKQSCCSSTDASFMQEHFLL 849 (1924)
Q Consensus 793 ~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~--r~~lSlk~~~~~~~d~~~~~~~~~~ 849 (1924)
+++ |.+.|++||.|+|+|++|+.+++ .+.||.+ +|.|+..+|..
T Consensus 165 E~i------p~E~~~~GdrIka~I~~Vd~~~kg~qIilSRt-------~p~~l~~Lf~~ 210 (470)
T PRK09202 165 EQI------PRENFRPGDRVRAYVYEVRKEARGPQIILSRT-------HPEFLKKLFEQ 210 (470)
T ss_pred HcC------CCccCCCCCEEEEEEEEEecCCCCCeEEEEeC-------cHHHHHHHHHH
Confidence 985 77889999999999999999887 8999875 56677777774
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00066 Score=77.62 Aligned_cols=178 Identities=15% Similarity=0.143 Sum_probs=115.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH----
Q 000176 1674 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK---- 1749 (1924)
Q Consensus 1674 s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~---- 1749 (1924)
....+...+..+++.|++++|...|++.+...|.+.-.....+|+++..+ ..+ +.+.|...|++.++..|..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y--~~~--~y~~A~~~~~~fi~~yP~~~~~~ 79 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYY--KQG--DYEEAIAAYERFIKLYPNSPKAD 79 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH--HTT---HHHHHHHHHHHHHH-TT-TTHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH--HcC--CHHHHHHHHHHHHHHCCCCcchh
Confidence 34556667777788888888888888888888877666666666666544 556 3478888888888887763
Q ss_pred HHHHHHHHHHHH-----------hCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCChH
Q 000176 1750 KVHLALLGLYER-----------TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHI 1818 (1924)
Q Consensus 1750 ~i~~~l~~i~~~-----------~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~~~~~A~~l~~ral~~~p~~~~~ 1818 (1924)
.+++.++..+.. .....+|...|+.++.+||++.- ..+|+..+..+-..+.
T Consensus 80 ~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y-------------~~~A~~~l~~l~~~la----- 141 (203)
T PF13525_consen 80 YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEY-------------AEEAKKRLAELRNRLA----- 141 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTT-------------HHHHHHHHHHHHHHHH-----
T ss_pred hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchH-------------HHHHHHHHHHHHHHHH-----
Confidence 444444443322 22345677777777777776554 3344433333322221
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHHH
Q 000176 1819 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD---LWSIYLDQEIRLGDVDLIRG 1873 (1924)
Q Consensus 1819 ~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d---lw~~y~~le~k~gd~~~ar~ 1873 (1924)
.--...|.++++.|.+..|..-|+.++..+|+... .+..++..+.+.|..+.+..
T Consensus 142 ~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 142 EHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 22345688999999999999999999999999754 67777888888888875543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.9e-05 Score=72.78 Aligned_cols=94 Identities=16% Similarity=0.109 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000176 1785 VWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1863 (1924)
Q Consensus 1785 vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~ 1863 (1924)
+|+..+..+... ++++|...|+++++..|.. ..+|..+|.++...++++.|...|++++...|.....|..++.++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN--ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 577888888888 8999999999999888765 3788889999998899999999999999988888888999999999
Q ss_pred HcCCHHHHHHHHHHHHh
Q 000176 1864 RLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1864 k~gd~~~ar~lferal~ 1880 (1924)
..|+++.|+..|++++.
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 99999999999998886
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=6.7e-05 Score=86.27 Aligned_cols=130 Identities=15% Similarity=0.074 Sum_probs=109.5
Q ss_pred HHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHH
Q 000176 1757 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1835 (1924)
Q Consensus 1757 ~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e 1835 (1924)
+=+.+.++|++|.+.|.++++..|.++-.|.+.+..|.+. .++.|.+-.+.||..+|.+ .++|.+++..++.+|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y--skay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY--SKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH--HHHHHHHHHHHHccCcHH
Confidence 4456788899999999999999999999999999999999 9999999999999998876 689999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhcCCCchhH
Q 000176 1836 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD---LIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1836 ~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~---~ar~lferal~~~~~pk~~ 1888 (1924)
.|..-|.++|..+|.+...|..+-..+.+.+... .+...|+-+......|+-+
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~ 222 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSR 222 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccch
Confidence 9999999999999999988888877777776655 5666677666655545444
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00013 Score=75.28 Aligned_cols=104 Identities=15% Similarity=0.141 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 000176 1783 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-IKFISQTAILEFKNGVADRGRSMFEGILSEYPKR---TDLWSI 1857 (1924)
Q Consensus 1783 ~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~-~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~---~dlw~~ 1857 (1924)
++.|+..+..++.+ ++++|...|.+++...|.+.. ..++..+|..+++.|++++|..+|+.++..+|.. ..+|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 46788899999999 999999999999999887532 4688999999999999999999999999999885 568999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1858 YLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1858 y~~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
++.++.+.|+++.|...|++++. ..|+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~ 110 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIK--RYPGSS 110 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHH--HCcCCh
Confidence 99999999999999999999998 555554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00012 Score=91.01 Aligned_cols=107 Identities=11% Similarity=0.068 Sum_probs=92.9
Q ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 000176 1786 WLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR 1864 (1924)
Q Consensus 1786 w~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k 1864 (1924)
+..-|.-++.. ++++|.++|.+||...|.+ ..+|..+|.+++..|++++|...|++++...|.+..+|..++.++..
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~--~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN--AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 34456667777 9999999999999999987 58999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhHH-HHHHHHH
Q 000176 1865 LGDVDLIRGLFERAISLSLPPKKMK-FLFKKYL 1896 (1924)
Q Consensus 1865 ~gd~~~ar~lferal~~~~~pk~~k-~lw~~yl 1896 (1924)
.|+++.|...|++++. +.|.... ..|...+
T Consensus 83 lg~~~eA~~~~~~al~--l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGAS--LAPGDSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 9999999999999999 5555442 2344444
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0017 Score=91.98 Aligned_cols=265 Identities=11% Similarity=0.018 Sum_probs=177.7
Q ss_pred cCCCCchHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchh-hHHHHHHHHHHHHHHc
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSS-----FVWIKYMAFMLSMADVEKARSIAERALQTINIREEN-EKLNIWVAYFNLENEY 1727 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~-----~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~-ekl~lWiayl~le~~~ 1727 (1924)
.++..++...+++++...|... ..+..++..+...|+++.|+..+++++......... .....+..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 4567788888888886544322 234455666778999999999999999653321111 1112333344556677
Q ss_pred CCCCHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC-----CHHHHHHHHHHH
Q 000176 1728 GNPPEEAVVKVFQRALQYCDP---------KKVHLALLGLYERTEQNKLADELLYKMIKKFKH-----SCKVWLRRVQRL 1793 (1924)
Q Consensus 1728 g~~~~e~a~~vferAl~~~~~---------~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~-----~~~vw~~~a~~l 1793 (1924)
| +.+.|...+++++..... ..++..++.++...|++++|...+++++..... ....|..++..+
T Consensus 545 G--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 545 G--FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred C--CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 8 569999999999876322 134556777888889999999999998875421 233444566677
Q ss_pred Hhc-CHHHHHHHHHHHHHhCCCCC-hHHH--HHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHH
Q 000176 1794 LKQ-QQEGVQAVVQRALLSLPRHK-HIKF--ISQ--TAILEFKNGVADRGRSMFEGILSEYPKRTD----LWSIYLDQEI 1863 (1924)
Q Consensus 1794 ~~~-~~~~A~~l~~ral~~~p~~~-~~~~--~~~--~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d----lw~~y~~le~ 1863 (1924)
... +++.|...+++++....... +... +.. .+..+...|+.+.|..+++......+.... .+..++..+.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 777 99999999999987643321 1111 111 123334578999999998887653322222 2567778888
Q ss_pred HcCCHHHHHHHHHHHHhc----CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000176 1864 RLGDVDLIRGLFERAISL----SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921 (1924)
Q Consensus 1864 k~gd~~~ar~lferal~~----~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~ 1921 (1924)
..|++++|..+|++++.. ......+ .....+.......|+.+.+...+.+|++..+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a-~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLN-RNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 999999999999999872 1122222 34555566677889999999999999987643
|
|
| >PRK11642 exoribonuclease R; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=2e-05 Score=105.97 Aligned_cols=74 Identities=31% Similarity=0.625 Sum_probs=64.9
Q ss_pred cCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccc--c---------CcccccCCCcEEEEEEEEEecCCCee
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV--D---------NIETIYRAGEKVKVKILKVDKEKRRI 1523 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~--~---------~~~~~~~~Gd~Vk~~Vl~id~e~~ri 1523 (1924)
-++|+++.|+|++|++||+||+|++.+++||||++++.+++. . +....|++||.|+|+|+++|.++++|
T Consensus 641 ~~iGe~f~G~Is~V~~fGifVeL~~~~vEGlV~vs~L~~d~y~~d~~~~~L~g~~~~~~~~lGD~V~VkV~~vD~~~rkI 720 (813)
T PRK11642 641 DQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESSGQTYRLGDRVEVRVEAVNMDERKI 720 (813)
T ss_pred ccCCcEEEEEEEEeecCceEEEECCCCeeeeEEEeecCCcceEecchheEEecccCCcEECCCCEEEEEEEEeecCCCeE
Confidence 379999999999999999999998767999999999987632 1 23467999999999999999999999
Q ss_pred EEecc
Q 000176 1524 SLGMK 1528 (1924)
Q Consensus 1524 ~lslK 1528 (1924)
.|++-
T Consensus 721 ~f~l~ 725 (813)
T PRK11642 721 DFSLI 725 (813)
T ss_pred EEEEe
Confidence 99973
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0022 Score=79.02 Aligned_cols=91 Identities=18% Similarity=0.188 Sum_probs=63.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCC
Q 000176 1825 AILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGE 1904 (1924)
Q Consensus 1825 A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~ 1904 (1924)
|.-.|+.|++..|...|..++...|++..++..-+-.+.+.|.+..|..-.+.++. +.|...+ .|.+=.......-+
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~k-gy~RKg~al~~mk~ 441 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIK-AYLRKGAALRAMKE 441 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHH-HHHHHHHHHHHHHH
Confidence 34456777888888888888888888888888888888888888888888888887 6665553 23332333333456
Q ss_pred HHHHHHHHHHHHHH
Q 000176 1905 EERIEYVKQKAMEY 1918 (1924)
Q Consensus 1905 ~~~~~~v~~rAle~ 1918 (1924)
++.+.+.|+.|+++
T Consensus 442 ydkAleay~eale~ 455 (539)
T KOG0548|consen 442 YDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHHHhc
Confidence 67777777777654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00034 Score=74.42 Aligned_cols=97 Identities=9% Similarity=-0.111 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
+..+.++..+.+.|++++|..+|+.++...+.+...|+.++..+-.. ++++|...|.+|+...|++ +..+...|..+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd--p~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA--PQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--chHHHHHHHHH
Confidence 56677778888999999999999999999899999999999988888 9999999999999999876 48899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhC
Q 000176 1829 FKNGVADRGRSMFEGILSEY 1848 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~ 1848 (1924)
+..|+.+.|+.-|+.++...
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999998766
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=4.2e-05 Score=86.74 Aligned_cols=155 Identities=18% Similarity=0.249 Sum_probs=113.0
Q ss_pred CHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHH
Q 000176 1690 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLAD 1769 (1924)
Q Consensus 1690 e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~ 1769 (1924)
.+-+.|..||.-|..- ..++|=++.|++.|...... .|.. .+|....-. +.+--.++. .+..
T Consensus 32 ~IvktRr~fE~rL~rr-----~~klnDf~~YI~yE~nlekl---RaKR-~Kr~~v~~K--------~s~sD~sip-qk~~ 93 (435)
T COG5191 32 RIVKTRRKFELRLQRR-----EKKLNDFMRYIKYECNLEKL---RAKR-VKRKKVGKK--------ASFSDMSIP-QKKI 93 (435)
T ss_pred HHHHHHHHHHHHHhcc-----cchHHHHHHHHHHHhhHHHH---HHHH-HHHHHhccc--------ccchhcccc-ceee
Confidence 3567788888777532 23578899999988765521 1111 122221100 011111111 1222
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Q 000176 1770 ELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEF-KNGVADRGRSMFEGILSE 1847 (1924)
Q Consensus 1770 ~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~-~~g~~e~Ar~lfe~aL~~ 1847 (1924)
=+|.++..+|++++++|..|+.+..+. .+.+...+|..+|+..|.+ +++|...+.+++ ..++++.+|++|.++|+.
T Consensus 94 f~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~n--vdlWI~~c~~e~~~~ani~s~Ra~f~~glR~ 171 (435)
T COG5191 94 FELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLN--VDLWIYCCAFELFEIANIESSRAMFLKGLRM 171 (435)
T ss_pred EeeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--ceeeeeeccchhhhhccHHHHHHHHHhhhcc
Confidence 345667778899999999999998888 9999999999999999998 589999888877 788999999999999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 000176 1848 YPKRTDLWSIYLDQEIR 1864 (1924)
Q Consensus 1848 ~Pk~~dlw~~y~~le~k 1864 (1924)
+|..+.+|..|..||..
T Consensus 172 N~~~p~iw~eyfr~El~ 188 (435)
T COG5191 172 NSRSPRIWIEYFRMELM 188 (435)
T ss_pred CCCCchHHHHHHHHHHH
Confidence 99999999999999874
|
|
| >cd05791 S1_CSL4 S1_CSL4: CSL4, S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.8e-05 Score=75.26 Aligned_cols=75 Identities=19% Similarity=0.356 Sum_probs=64.3
Q ss_pred cCCCcEEEEEEEEeecceEEEEEe-------cCceeEEeeccccCccccc--CcccccCCCcEEEEEEEEEecCCCeeEE
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIE-------NTNLVGLCHVSELSEDHVD--NIETIYRAGEKVKVKILKVDKEKRRISL 1525 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~-------~~~v~gl~h~sels~~~~~--~~~~~~~~Gd~Vk~~Vl~id~e~~ri~l 1525 (1924)
.++||+|-|+|+++....++|+|- ++...|++|++++...+.+ ++.+.|++||.|+|+|++++. .+.+.|
T Consensus 4 P~~GDiVig~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~~dv~~~~~d~~~~~~~f~~GDiV~AkVis~~~-~~~~~L 82 (92)
T cd05791 4 PKVGSIVIARVTRINPRFAKVDILCVGGRPLKESFRGVIRKEDIRATEKDKVEMYKCFRPGDIVRAKVISLGD-ASSYYL 82 (92)
T ss_pred CCCCCEEEEEEEEEcCCEEEEEEEEecCeecCCCcccEEEHHHccccccchHHHHhhcCCCCEEEEEEEEcCC-CCCcEE
Confidence 379999999999999999999992 2368899999999887776 688999999999999999973 466888
Q ss_pred ecccc
Q 000176 1526 GMKSS 1530 (1924)
Q Consensus 1526 slK~s 1530 (1924)
|++..
T Consensus 83 st~~~ 87 (92)
T cd05791 83 STAEN 87 (92)
T ss_pred EecCC
Confidence 88763
|
S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In S. cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure". |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00024 Score=87.97 Aligned_cols=121 Identities=12% Similarity=0.074 Sum_probs=86.5
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 000176 1717 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ 1796 (1924)
Q Consensus 1717 Wiayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~ 1796 (1924)
--.++.+....+ ..+.|.++|++..+..|. ++..++.+|...++..+|.++++++++.+|.+..++...++|++..
T Consensus 172 v~~Ll~~l~~t~--~~~~ai~lle~L~~~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 172 VDTLLKYLSLTQ--RYDEAIELLEKLRERDPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHhhcc--cHHHHHHHHHHHHhcCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 334555544455 347777777777776653 5555777777777777777777777777777777777777777777
Q ss_pred -CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000176 1797 -QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEG 1843 (1924)
Q Consensus 1797 -~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~ 1843 (1924)
+++.|..+.++|+...|.. ...|..+|+.|.+.|+++.|...++.
T Consensus 248 ~~~~lAL~iAk~av~lsP~~--f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSE--FETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred CCHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 7777777777777777776 47777777777777777777765554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00025 Score=83.63 Aligned_cols=104 Identities=10% Similarity=0.169 Sum_probs=80.0
Q ss_pred HHHHHHHH-HHHHhCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC-hHHHHHH
Q 000176 1750 KVHLALLG-LYERTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQ 1823 (1924)
Q Consensus 1750 ~i~~~l~~-i~~~~gk~e~A~~~fe~~lk~~~~~---~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~-~~~~~~~ 1823 (1924)
+.|+..+. ++...+++++|...|+..++.||++ +.+|+.+|..++.. ++++|...|+++++.+|.+. ..++|.+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 34444443 4455688888888888888888766 57888888888888 88888888888888888753 3578888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000176 1824 TAILEFKNGVADRGRSMFEGILSEYPKRTD 1853 (1924)
Q Consensus 1824 ~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d 1853 (1924)
.|..+...|+++.|+.+|+++++.+|+...
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 888888888888888888888888888754
|
|
| >TIGR00358 3_prime_RNase VacB and RNase II family 3'-5' exoribonucleases | Back alignment and domain information |
|---|
Probab=97.83 E-value=4.1e-05 Score=102.00 Aligned_cols=74 Identities=31% Similarity=0.595 Sum_probs=64.5
Q ss_pred ccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccc-----------cCcccccCCCcEEEEEEEEEecCCCe
Q 000176 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------DNIETIYRAGEKVKVKILKVDKEKRR 1522 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~-----------~~~~~~~~~Gd~Vk~~Vl~id~e~~r 1522 (1924)
.-++|++++|.|++|++||+||+|++.+++||+|++++.+++. ++....|++||.|+|+|+++|.++++
T Consensus 569 ~~~iG~~~~g~I~~v~~~GifV~L~~~~veGlV~~s~l~~d~y~~d~~~~~l~g~~~~~~~~lGD~V~Vki~~vd~~~~~ 648 (654)
T TIGR00358 569 LDKVGTEFSGEISSVTRFGMFVRLDDNGIDGLIHISTLHNDYYVFDQEKMALIGKGTGKVYRIGDRVTVKLTEVNMETRS 648 (654)
T ss_pred hhCCCcEEEEEEEeEEcCcEEEEecCCceEEEEEeEeCCCcceEEeccccEEEeccCCcEECCCCEEEEEEEEEecccCe
Confidence 3468999999999999999999998668999999999987641 12346799999999999999999999
Q ss_pred eEEec
Q 000176 1523 ISLGM 1527 (1924)
Q Consensus 1523 i~lsl 1527 (1924)
|.|++
T Consensus 649 I~f~l 653 (654)
T TIGR00358 649 IIFEL 653 (654)
T ss_pred EEEEE
Confidence 99875
|
This model is defined to identify a pair of paralogous 3-prime exoribonucleases in E. coli, plus the set of proteins apparently orthologous to one or the other in other eubacteria. VacB was characterized originally as required for the expression of virulence genes, but is now recognized as the exoribonuclease RNase R (Rnr). Its paralog in E. coli and H. influenzae is designated exoribonuclease II (Rnb). Both are involved in the degradation of mRNA, and consequently have strong pleiotropic effects that may be difficult to disentangle. Both these proteins share domain-level similarity (RNB, S1) with a considerable number of other proteins, and full-length similarity scoring below the trusted cutoff to proteins associated with various phenotypes but uncertain biochemistry; it may be that these latter proteins are also 3-prime exoribonucleases. |
| >COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.7e-05 Score=98.15 Aligned_cols=77 Identities=22% Similarity=0.336 Sum_probs=72.2
Q ss_pred hccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecc
Q 000176 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439 (1924)
Q Consensus 1362 ~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~ 1439 (1924)
..++++|+++.|+|+++.++|+||.|.++-+|+||+|++++.++....+.+++||.|.++|+.+| +.+|+.||++..
T Consensus 614 ~~e~evg~iy~G~V~ri~~fGaFv~l~~gkdgl~hiS~~~~~rv~kv~dvlk~Gd~v~Vkv~~iD-~~Gri~ls~~~~ 690 (692)
T COG1185 614 TREVEVGEVYEGTVVRIVDFGAFVELLPGKDGLVHISQLAKERVEKVEDVLKEGDEVKVKVIEID-KQGRIRLSIKAV 690 (692)
T ss_pred HhhcccccEEEEEEEEEeecceEEEecCCcceeEEehhhhhhhhhcccceeecCceEEEEEeeec-ccCCccceehhc
Confidence 35789999999999999999999999999999999999999999998999999999999999999 589999999853
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.001 Score=76.89 Aligned_cols=109 Identities=17% Similarity=0.185 Sum_probs=95.4
Q ss_pred HHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 000176 1789 RVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1867 (1924)
Q Consensus 1789 ~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd 1867 (1924)
-+.-+++. +|++|...|.+||+..|.+. -+|..-|..|.+.|.++.|.+-.+.+|..+|.....|..+...+..+|+
T Consensus 87 eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA--VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 87 EGNKLMKNKDYQEAVDKYTEAIELDPTNA--VYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcc--hHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc
Confidence 34556777 99999999999999999984 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHH-HHHcC
Q 000176 1868 VDLIRGLFERAISLSLPPKKMKFLFKKYLEY-EKSVG 1903 (1924)
Q Consensus 1868 ~~~ar~lferal~~~~~pk~~k~lw~~yl~~-E~~~G 1903 (1924)
++.|...|.+||. +.|.+. .|+.=|.+ |.+.+
T Consensus 165 ~~~A~~aykKaLe--ldP~Ne--~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 165 YEEAIEAYKKALE--LDPDNE--SYKSNLKIAEQKLN 197 (304)
T ss_pred HHHHHHHHHhhhc--cCCCcH--HHHHHHHHHHHHhc
Confidence 9999999999999 888887 45544444 44443
|
|
| >TIGR01953 NusA transcription termination factor NusA | Back alignment and domain information |
|---|
Probab=97.76 E-value=6.7e-05 Score=90.80 Aligned_cols=121 Identities=18% Similarity=0.365 Sum_probs=86.4
Q ss_pred hccccCCCCeEeeEEEeecCCCeEEEEecccccch---hc--cCCCCcCccCCCCEEEEEEEEEecCe-EEEEECCCeEE
Q 000176 714 MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINS---AQ--QLPSDASHIHPNSVVHGYVCNIIETG-CFVRFLGRLTG 787 (1924)
Q Consensus 714 ~~~~~~~G~~i~~vl~id~~~~~i~ls~K~sl~~~---~~--~~~~~~~~~~~G~~~~G~V~~i~~~G-~fV~f~~~l~G 787 (1924)
+...+++||.++..+..+.-++....+.|+.+... .+ .+...|.+ +.|++++|+|.++.+.| +||.+ |++.|
T Consensus 80 ~d~~~~vGD~I~~~I~~~~fgR~aaq~aKqvi~Qkire~ere~i~~ey~~-k~GeiV~G~V~~v~~~g~v~Vdi-G~~ea 157 (341)
T TIGR01953 80 IDPDVQIGDEVKKEIPPENFGRIAAQTAKQVILQKIREAERERVYDEFSS-KEGEIISGTVKRVNRRGNLYVEL-GKTEG 157 (341)
T ss_pred hccccccCCEEEEEecccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCEEEEEEEEEecCCcEEEEE-CCeEE
Confidence 45578899999844333333343445566654222 11 23333333 58999999999999988 79999 79999
Q ss_pred EecCCccCcccccCcccCCCCCCEEEEEEEEeeCCC--CeEEEeecccccCCCchhhHHHHHHH
Q 000176 788 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET--GRITLSLKQSCCSSTDASFMQEHFLL 849 (1924)
Q Consensus 788 lv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~--~r~~lSlk~~~~~~~d~~~~~~~~~~ 849 (1924)
++|+++.. |.+.|++||.++|.|++++... ..+.||.+ ++.|+..+|..
T Consensus 158 ~LP~~E~i------p~E~~~~Gd~ik~~V~~V~~~~kg~qIivSRt-------~~~~v~~Lfe~ 208 (341)
T TIGR01953 158 ILPKKEQI------PGEKFRIGDRIKAYVYEVRKTAKGPQIILSRT-------HPEFVKELLKL 208 (341)
T ss_pred EecHHHcC------CCcCCCCCCEEEEEEEEEEcCCCCCeEEEEeC-------cHHHHHHHHHH
Confidence 99999886 4567999999999999999654 46888876 45677777764
|
This model describes NusA, or N utilization substance protein A, a bacterial transcription termination factor. It binds to RNA polymerase alpha subunit and promotes termination at certain RNA hairpin structures. It is named for the interaction in E. coli of phage lambda antitermination protein N with the N-utilization substance, consisting of NusA, NusB, NusE (ribosomal protein S10), and nusG. This model represents a region of NusA shared in all bacterial forms, and including an S1 (pfam00575) and a KH (pfam00013) RNA binding domains. Proteobacterial forms have an additional C-terminal region, not included in this model, with two repeats of 50-residue domain rich in acidic amino acids. |
| >cd05701 S1_Rrp5_repeat_hs10 S1_Rrp5_repeat_hs10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=97.76 E-value=2.9e-05 Score=66.86 Aligned_cols=59 Identities=20% Similarity=0.293 Sum_probs=54.3
Q ss_pred CcEEEEEEEEEeeeEEEEEecCCcceEEEEeeecCC-CCCCCcccccCCCeEEEEEeccC
Q 000176 971 HQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALP 1029 (1924)
Q Consensus 971 G~~v~g~V~~i~~~~v~vsl~~~~~~~g~~~~~~~~-~~~~~~~~f~~Gq~v~~~V~~~~ 1029 (1924)
++.++|.|+++.++|++||+.+.+++..+.-.+|+| ++++.++++++||++.+.|....
T Consensus 1 ~S~htA~VQh~~kdfAvvSL~~t~~L~a~p~~sHLNdtfrf~seklkvG~~l~v~lk~~~ 60 (69)
T cd05701 1 DSRHTAIVQHADKDFAIVSLATTGDLAAFPTRSHLNDTFRFDSEKLSVGQCLDVTLKDPN 60 (69)
T ss_pred CCccchhhhhhhhceEEEEeeccccEEEEEchhhccccccccceeeeccceEEEEEecCc
Confidence 356789999999999999999999999999999999 88889999999999999998765
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 10 (hs10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >TIGR00448 rpoE DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00011 Score=81.80 Aligned_cols=77 Identities=22% Similarity=0.382 Sum_probs=65.6
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccC-----------CCCccCCCCcEEEEEEEEEe-----CCC
Q 000176 1366 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE-----------SPEKEFPIGKLVAGRVLSVE-----PLS 1429 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~-----------~~~~~f~~G~~V~~kVl~vd-----~e~ 1429 (1924)
..|+++.|.|++++++|+||++++ ++|+++.+++.+.+.. +....|+.|+.|+++|++++ ++.
T Consensus 80 ~~gEvv~G~V~~v~~~GifV~lg~-~~gi~~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~~~~ 158 (179)
T TIGR00448 80 ELGEIVEGEVIEIVEFGAFVSLGP-FDGLFHVSQVTDDYCYYDPKESALIGKETKKVLDEGDKVRARIVALSLKDRRPEG 158 (179)
T ss_pred cCCCEEEEEEEEEEeeEEEEEeCC-ceEEEEcHHhCCCceEEccccceEEEccCCeEEcCCCEEEEEEEEEEccCCCCCc
Confidence 369999999999999999999974 9999999999876432 23467999999999999998 678
Q ss_pred CEEEEEeecccccc
Q 000176 1430 KRVEVTLKTSDSRT 1443 (1924)
Q Consensus 1430 ~ri~LSlk~~~~~~ 1443 (1924)
.+|.+|+|+.-..+
T Consensus 159 ~~I~lt~k~~~LG~ 172 (179)
T TIGR00448 159 SKIGLTMRQPLLGK 172 (179)
T ss_pred ceEEEEeccCcCCc
Confidence 89999999866544
|
This family seems to be confined to the archea and eukaryotic taxa and are quite dissimilar to E.coli rpoE. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0063 Score=86.15 Aligned_cols=238 Identities=13% Similarity=0.097 Sum_probs=160.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-------HHHHH
Q 000176 1682 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-------KVHLA 1754 (1924)
Q Consensus 1682 ~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-------~i~~~ 1754 (1924)
+..+...|+++.|+..+++++...+..........+..+.......| +.+.|...|++|+...... ..+..
T Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G--~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~ 536 (903)
T PRK04841 459 AQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG--ELARALAMMQQTEQMARQHDVYHYALWSLLQ 536 (903)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 34456789999999999999975553221111222333444456678 5699999999999764321 45566
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCC---ChHHHHH
Q 000176 1755 LLGLYERTEQNKLADELLYKMIKKFKH--------SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH---KHIKFIS 1822 (1924)
Q Consensus 1755 l~~i~~~~gk~e~A~~~fe~~lk~~~~--------~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~---~~~~~~~ 1822 (1924)
++.++...|+++.|.+.+++++..... ...++..++..+... ++++|...+++++...... .....+.
T Consensus 537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 616 (903)
T PRK04841 537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA 616 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence 778899999999999999998875321 122344566677777 9999999999998864321 2345666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHH-----HHHHHHHcCCHHHHHHHHHHHHhcCCCchh-HHHHHHH
Q 000176 1823 QTAILEFKNGVADRGRSMFEGILSEYPKRT--DLWSI-----YLDQEIRLGDVDLIRGLFERAISLSLPPKK-MKFLFKK 1894 (1924)
Q Consensus 1823 ~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~--dlw~~-----y~~le~k~gd~~~ar~lferal~~~~~pk~-~k~lw~~ 1894 (1924)
..|.++...|+++.|+..+++++...+... ..|.. .+..+...|+.+.|+.++++.......... ....+..
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 696 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN 696 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence 788899999999999999999977543321 11211 123334578999999998886651111110 0012344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000176 1895 YLEYEKSVGEEERIEYVKQKAMEYVES 1921 (1924)
Q Consensus 1895 yl~~E~~~G~~~~~~~v~~rAle~v~~ 1921 (1924)
+.......|+.+.+...+++|++..+.
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~~ 723 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENARS 723 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 555577789999999999999887543
|
|
| >PRK08563 DNA-directed RNA polymerase subunit E'; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00011 Score=82.66 Aligned_cols=77 Identities=25% Similarity=0.531 Sum_probs=65.2
Q ss_pred cCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCccccc-----------CcccccCCCcEEEEEEEEEecCCC--
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-----------NIETIYRAGEKVKVKILKVDKEKR-- 1521 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~-----------~~~~~~~~Gd~Vk~~Vl~id~e~~-- 1521 (1924)
..+|+++.|+|+++.++|+||+|+ .++|++|.+++.+++.. +....|+.||.|+++|++++.+.+
T Consensus 79 P~~GEVv~g~V~~v~~~Gi~V~lg--~~~g~v~~~~l~~~~~~~d~~~~~~~~~~~~~~i~~Gd~VrvrV~~v~~~~~~~ 156 (187)
T PRK08563 79 PELQEVVEGEVVEVVEFGAFVRIG--PVDGLLHISQIMDDYISYDPKNGRLIGKESKRVLKVGDVVRARIVAVSLKERRP 156 (187)
T ss_pred ccCCCEEEEEEEEEEccEEEEEEe--CceEEEEcHHcCCCceEEccccceEEEccCCeEEcCCCEEEEEEEEEEcccCCC
Confidence 346999999999999999999996 49999999999876432 235678999999999999997654
Q ss_pred ---eeEEeccccccC
Q 000176 1522 ---RISLGMKSSYFK 1533 (1924)
Q Consensus 1522 ---ri~lslK~s~~~ 1533 (1924)
+|.+|+|..++.
T Consensus 157 ~~~~I~ls~~~~~LG 171 (187)
T PRK08563 157 RGSKIGLTMRQPGLG 171 (187)
T ss_pred CCCEEEEEecCCCCC
Confidence 899999997763
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00059 Score=75.90 Aligned_cols=101 Identities=17% Similarity=0.173 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000176 1785 VWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1862 (1924)
Q Consensus 1785 vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~-~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le 1862 (1924)
.|+.++..+... ++++|...|++++...|... ...+|..+|.+++..|++++|...|++++...|++...|..++.++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344444444444 44455555555544433321 1234555555555555555555555555555555555555555554
Q ss_pred HHcCC--------------HHHHHHHHHHHHhcCCCchh
Q 000176 1863 IRLGD--------------VDLIRGLFERAISLSLPPKK 1887 (1924)
Q Consensus 1863 ~k~gd--------------~~~ar~lferal~~~~~pk~ 1887 (1924)
...|+ +++|..+|++++. ..|.+
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~--~~p~~ 153 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR--LAPNN 153 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh--hCchh
Confidence 44443 3455555666555 44443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00078 Score=72.61 Aligned_cols=134 Identities=14% Similarity=0.114 Sum_probs=106.8
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHH
Q 000176 1764 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSMF 1841 (1924)
Q Consensus 1764 k~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~-~~~~~~~~A~le~~~g~~e~Ar~lf 1841 (1924)
+.++|...|+.++..+ .. +...+...++..++.+|... ....++.+|..++..|++++|...|
T Consensus 7 ~~~~a~~~y~~~~~~~---------------~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l 71 (145)
T PF09976_consen 7 QAEQASALYEQALQAL---------------QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAAL 71 (145)
T ss_pred HHHHHHHHHHHHHHHH---------------HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3456666666666432 24 78889999999999998873 2467888899999999999999999
Q ss_pred HHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1842 EGILSEYPKR---TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916 (1924)
Q Consensus 1842 e~aL~~~Pk~---~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAl 1916 (1924)
+.++...|+. ..++..++.+++..|+++.|...++.+-. ++-.. ..|....+.....|+.+.|+..|++|+
T Consensus 72 ~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~---~~~~~-~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 72 EKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPD---EAFKA-LAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccC---cchHH-HHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999988664 33688889999999999999999977433 22233 467777888999999999999999985
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00039 Score=76.99 Aligned_cols=116 Identities=9% Similarity=0.088 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHHHHHHH
Q 000176 1765 NKLADELLYKMIKKFK--HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSM 1840 (1924)
Q Consensus 1765 ~e~A~~~fe~~lk~~~--~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~-~~~~~~~~A~le~~~g~~e~Ar~l 1840 (1924)
+..+...+...++..+ .....|+..+..+... ++++|...|++++...|.+. ...+|..+|.++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4455555555554433 2366788888888877 88888888888887766542 235788888888888888888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHh
Q 000176 1841 FEGILSEYPKRTDLWSIYLDQEI-------RLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1841 fe~aL~~~Pk~~dlw~~y~~le~-------k~gd~~~ar~lferal~ 1880 (1924)
|++++...|.....|...+.++. ..|+++.|...|++++.
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~ 141 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAE 141 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHH
Confidence 88888888888888888887777 55666666666666554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00047 Score=89.07 Aligned_cols=185 Identities=14% Similarity=0.062 Sum_probs=155.8
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1736 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~ 1736 (1924)
...+-..|=++++.+|+-...|-.++.+|....+..+|+..|++|....+... ..|-+....+....+ -+.|.
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatda-----eaaaa~adtyae~~~--we~a~ 546 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDA-----EAAAASADTYAEEST--WEEAF 546 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhh-----hhHHHHHHHhhcccc--HHHHH
Confidence 55566677788888999999999999999877799999999999997655422 368888888777774 48888
Q ss_pred HHHHHHHhcCCCH---HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC
Q 000176 1737 KVFQRALQYCDPK---KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1812 (1924)
Q Consensus 1737 ~vferAl~~~~~~---~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~ 1812 (1924)
.+.-++-+..+.. ..|...+-+|...++...|..-|+.++...|.+...|..+++.|... .+..|...|.+|....
T Consensus 547 ~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 547 EICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred HHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 8877777777654 78888888999999999999999999999999999999999999999 9999999999999998
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000176 1813 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1850 (1924)
Q Consensus 1813 p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk 1850 (1924)
|.+. -..+.-|.++..+|.+..|...++..+....+
T Consensus 627 P~s~--y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~ 662 (1238)
T KOG1127|consen 627 PLSK--YGRFKEAVMECDNGKYKEALDALGLIIYAFSL 662 (1238)
T ss_pred cHhH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 8773 56666788888999999999999999876543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00082 Score=71.61 Aligned_cols=101 Identities=10% Similarity=-0.115 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000176 1713 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQ 1791 (1924)
Q Consensus 1713 kl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~ 1791 (1924)
.++.-.+|.......| +.+.|..+|+-++.+.|.. .-|+.|+.++...|++++|.+.|.++....++++..+++.+.
T Consensus 34 ~l~~lY~~A~~ly~~G--~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVK--EFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 4566778888888999 5599999999999999986 999999999999999999999999999999999999999999
Q ss_pred HHHhc-CHHHHHHHHHHHHHhCCCC
Q 000176 1792 RLLKQ-QQEGVQAVVQRALLSLPRH 1815 (1924)
Q Consensus 1792 ~l~~~-~~~~A~~l~~ral~~~p~~ 1815 (1924)
.++.. +.+.|++.|+.++..+..+
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhccC
Confidence 99999 9999999999999988444
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.72 E-value=7.6e-05 Score=68.30 Aligned_cols=62 Identities=24% Similarity=0.369 Sum_probs=48.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 000176 1823 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1886 (1924)
Q Consensus 1823 ~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk 1886 (1924)
..|..+++.|++++|+..|++++..+|++.++|..++.++...|+++.|+..|++++. ..|+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~~P~ 63 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE--LDPD 63 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcC
Confidence 4577777888888888888888888888888888888888888888888888888877 4443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0095 Score=74.08 Aligned_cols=241 Identities=12% Similarity=0.151 Sum_probs=147.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhH-HHH----------HH---------------HHHHHH
Q 000176 1671 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEK-LNI----------WV---------------AYFNLE 1724 (1924)
Q Consensus 1671 ~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ek-l~l----------Wi---------------ayl~le 1724 (1924)
++.+..+-.-+++.+.+++.+++|.++|+..++.....-+.++ .|+ |+ ...-.+
T Consensus 106 ~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~ 185 (652)
T KOG2376|consen 106 DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACIL 185 (652)
T ss_pred cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHH
Confidence 4556667777888889999999999999988764333212111 111 21 112223
Q ss_pred HHcCCCCHHHHHHHHHHHHhcCC----------C------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHH----
Q 000176 1725 NEYGNPPEEAVVKVFQRALQYCD----------P------KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCK---- 1784 (1924)
Q Consensus 1725 ~~~g~~~~e~a~~vferAl~~~~----------~------~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~---- 1784 (1924)
...|+| ..|.+.++.|++.+. . ..+...++-++...|+.++|.++|...++..+.+..
T Consensus 186 i~~gky--~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av 263 (652)
T KOG2376|consen 186 IENGKY--NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAV 263 (652)
T ss_pred HhcccH--HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHH
Confidence 344644 788888888855441 0 167888888999999999999999998887642211
Q ss_pred -------------------------HHHHHHHHHHhc---------------------CHHHHHHHHHHHHHhCCCCC--
Q 000176 1785 -------------------------VWLRRVQRLLKQ---------------------QQEGVQAVVQRALLSLPRHK-- 1816 (1924)
Q Consensus 1785 -------------------------vw~~~a~~l~~~---------------------~~~~A~~l~~ral~~~p~~~-- 1816 (1924)
....++++++.. ..+.++++ ...+|...
T Consensus 264 ~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~----~a~lp~~~p~ 339 (652)
T KOG2376|consen 264 AVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVREL----SASLPGMSPE 339 (652)
T ss_pred HhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH----HHhCCccCch
Confidence 111111111111 11112221 22222221
Q ss_pred -hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH--------HHHhcCCCch
Q 000176 1817 -HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR-TDLWSIYLDQEIRLGDVDLIRGLFE--------RAISLSLPPK 1886 (1924)
Q Consensus 1817 -~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~-~dlw~~y~~le~k~gd~~~ar~lfe--------ral~~~~~pk 1886 (1924)
-+.+...-+..-... .+-.|..++...-..+|.+ ..+-...+++.+..|+++.|..++. ........|
T Consensus 340 ~~~~~ll~~~t~~~~~-~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P- 417 (652)
T KOG2376|consen 340 SLFPILLQEATKVREK-KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP- 417 (652)
T ss_pred HHHHHHHHHHHHHHHH-HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh-
Confidence 123333333333333 5677888888888888876 6678888999999999999999998 333322232
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 000176 1887 KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1922 (1924)
Q Consensus 1887 ~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~~ 1922 (1924)
.+--....+..+.++...+..++..|+.|.+..
T Consensus 418 ---~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~ 450 (652)
T KOG2376|consen 418 ---GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQ 450 (652)
T ss_pred ---hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 122333344455677778999999999999874
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0013 Score=85.21 Aligned_cols=112 Identities=10% Similarity=0.045 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000176 1798 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1877 (1924)
Q Consensus 1798 ~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lfer 1877 (1924)
...|.+..++++..........++..+|......|++++|...|++++...| +...|..++.++...|++++|...|++
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3455556666655422222246677777777777888888888888888888 467788888888888888888888888
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000176 1878 AISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKA 1915 (1924)
Q Consensus 1878 al~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rA 1915 (1924)
|+. +.|.....+|-.=+-|. -+.+.+...+.++
T Consensus 479 A~~--L~P~~pt~~~~~~~~f~---~~~~~~~~~~~~~ 511 (517)
T PRK10153 479 AFN--LRPGENTLYWIENLVFQ---TSVETVVPYLYRF 511 (517)
T ss_pred HHh--cCCCCchHHHHHhcccc---ccHHHHHHHHHhc
Confidence 887 55554444555545453 3455555444443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0049 Score=77.99 Aligned_cols=227 Identities=12% Similarity=0.074 Sum_probs=144.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000176 1679 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGL 1758 (1924)
Q Consensus 1679 ~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i 1758 (1924)
.+-+....++|-+++|..+|.++-+. . + +-.|+...|.+ ++|.++.+.- ..+.-.+.|+.|+..
T Consensus 804 akvAvLAieLgMlEeA~~lYr~ckR~-D---------L---lNKlyQs~g~w--~eA~eiAE~~-DRiHLr~Tyy~yA~~ 867 (1416)
T KOG3617|consen 804 AKVAVLAIELGMLEEALILYRQCKRY-D---------L---LNKLYQSQGMW--SEAFEIAETK-DRIHLRNTYYNYAKY 867 (1416)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHH-H---------H---HHHHHHhcccH--HHHHHHHhhc-cceehhhhHHHHHHH
Confidence 34455567788889999999888742 1 1 11233344533 4444333211 112224888888988
Q ss_pred HHHhCChHHHHHHHHH----------HHHhcC----------CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC---
Q 000176 1759 YERTEQNKLADELLYK----------MIKKFK----------HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR--- 1814 (1924)
Q Consensus 1759 ~~~~gk~e~A~~~fe~----------~lk~~~----------~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~--- 1814 (1924)
++..++.+.|++.|++ |++.+| .++++|.=|++++... ..+.|..+|..|-..+..
T Consensus 868 Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI 947 (1416)
T KOG3617|consen 868 LEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRI 947 (1416)
T ss_pred HHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheee
Confidence 8888888888888885 444443 4678888899988888 999999988887654421
Q ss_pred ----------------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCC---CHHHHHH-----------H
Q 000176 1815 ----------------HKHIKFISQTAILEFKNGVADRGRSMFEGILS------EYPK---RTDLWSI-----------Y 1858 (1924)
Q Consensus 1815 ----------------~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~------~~Pk---~~dlw~~-----------y 1858 (1924)
.....+.+.+|+.|...|++-+|...|-+|-+ .... ...+|+. -
T Consensus 948 ~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~a 1027 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSA 1027 (1416)
T ss_pred EeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHH
Confidence 11235678888999999998888888877622 2211 1123432 1
Q ss_pred HHHHHHcC-CHHHHHHHHHHH---------------------HhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1859 LDQEIRLG-DVDLIRGLFERA---------------------ISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916 (1924)
Q Consensus 1859 ~~le~k~g-d~~~ar~lfera---------------------l~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAl 1916 (1924)
+.+|...| .+++|--+|.+| |+.++.+..--.+.++..+|...+.++++|-.++-.|.
T Consensus 1028 ArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1028 ARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 22233333 566666555443 12234443222689999999999999999988887777
Q ss_pred HHHHh
Q 000176 1917 EYVES 1921 (1924)
Q Consensus 1917 e~v~~ 1921 (1924)
+|=.+
T Consensus 1108 ~~~~A 1112 (1416)
T KOG3617|consen 1108 EFSGA 1112 (1416)
T ss_pred HHHHH
Confidence 77554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0007 Score=79.94 Aligned_cols=104 Identities=15% Similarity=0.173 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHH-Hhc-CHHHHHHHHHHHHHhCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHH
Q 000176 1782 SCKVWLRRVQRL-LKQ-QQEGVQAVVQRALLSLPRHKH-IKFISQTAILEFKNGVADRGRSMFEGILSEYPK---RTDLW 1855 (1924)
Q Consensus 1782 ~~~vw~~~a~~l-~~~-~~~~A~~l~~ral~~~p~~~~-~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk---~~dlw 1855 (1924)
....|+..+..+ +.. ++++|...|+..++.+|.+.. ..+++.+|.+++..|+++.|+..|++++..+|+ ..++|
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 457788887766 556 999999999999999999753 579999999999999999999999999999887 57899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 000176 1856 SIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1887 (1924)
Q Consensus 1856 ~~y~~le~k~gd~~~ar~lferal~~~~~pk~ 1887 (1924)
...+..+...|+++.|+..|++++. .+|+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~--~yP~s 250 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIK--KYPGT 250 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 9999999999999999999999998 44443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00078 Score=83.47 Aligned_cols=124 Identities=16% Similarity=0.128 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
-+-..++.++...+.++.|.++|+++.+.+ +.++..++..++.. +..+|.+++.++++..|.+ ..++...|+|+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~---pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d--~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD---PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQD--SELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC---CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Confidence 344456677777889999999999999876 45788888988888 8899999999999999877 68999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERA 1878 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lfera 1878 (1924)
.+.++++.|..+.++++...|.....|..++..|++.|+++.|...+..+
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999998766543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00017 Score=66.81 Aligned_cols=65 Identities=18% Similarity=0.192 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 000176 1783 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG-VADRGRSMFEGILSEYP 1849 (1924)
Q Consensus 1783 ~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g-~~e~Ar~lfe~aL~~~P 1849 (1924)
+.+|..+|..++.. ++++|...|+++++.+|.+ ..+|..+|..++..| ++++|+..|+++++.+|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~--~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN--AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH--HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 44455555555555 5555555555555555443 345555555555555 45555555555555444
|
... |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.017 Score=72.00 Aligned_cols=244 Identities=14% Similarity=0.141 Sum_probs=154.2
Q ss_pred HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----CCc----chh-hHH-HHHHHHHHHHHHcCCCCHHHHHH
Q 000176 1669 RSSPN-SSFVWIKYMAFMLSMADVEKARSIAERALQTI----NIR----EEN-EKL-NIWVAYFNLENEYGNPPEEAVVK 1737 (1924)
Q Consensus 1669 ~~~P~-s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i----~~~----ee~-ekl-~lWiayl~le~~~g~~~~e~a~~ 1737 (1924)
...|. +.++.++.+-.++..|++.+|.++++.|++++ ... ++. +.+ -+-.++.......| +.++|..
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G--qt~ea~~ 245 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG--QTAEASS 245 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc--chHHHHH
Confidence 33454 78888999999999999999999999995422 211 111 112 23344555556778 5688999
Q ss_pred HHHHHHhcCCCHHHHHHHH------------------------------H--------------------HHHHhCChHH
Q 000176 1738 VFQRALQYCDPKKVHLALL------------------------------G--------------------LYERTEQNKL 1767 (1924)
Q Consensus 1738 vferAl~~~~~~~i~~~l~------------------------------~--------------------i~~~~gk~e~ 1767 (1924)
+|...++.++.+.-..+.+ . +..-+++.+.
T Consensus 246 iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q 325 (652)
T KOG2376|consen 246 IYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQ 325 (652)
T ss_pred HHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 9999988775421111111 1 1111121122
Q ss_pred HHHHHHHHHHhcCCCHHHHH-HHHHH--HHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000176 1768 ADELLYKMIKKFKHSCKVWL-RRVQR--LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEG 1843 (1924)
Q Consensus 1768 A~~~fe~~lk~~~~~~~vw~-~~a~~--l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~ 1843 (1924)
++++. ....+..+...+ .+.+- ..+. .+.+|.+++....+..|.+. ..+....||+.+.+|+++.|..+++.
T Consensus 326 ~r~~~---a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s-~~v~L~~aQl~is~gn~~~A~~il~~ 401 (652)
T KOG2376|consen 326 VRELS---ASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKS-KVVLLLRAQLKISQGNPEVALEILSL 401 (652)
T ss_pred HHHHH---HhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchh-HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 22211 111122222221 11111 1111 57788888888888888763 46888899999999999999999995
Q ss_pred HHHhC----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCc-hhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000176 1844 ILSEY----P---KRTDLWSIYLDQEIRLGDVDLIRGLFERAISL---SLPP-KKMKFLFKKYLEYEKSVGEEERIEYVK 1912 (1924)
Q Consensus 1844 aL~~~----P---k~~dlw~~y~~le~k~gd~~~ar~lferal~~---~~~p-k~~k~lw~~yl~~E~~~G~~~~~~~v~ 1912 (1924)
.+.++ + ....+-.....++++.++.+.|-.+|..|+.- ..+. .....+|...+.|+.++|+.+++..++
T Consensus 402 ~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~l 481 (652)
T KOG2376|consen 402 FLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLL 481 (652)
T ss_pred HhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHH
Confidence 55322 1 12335555666788888988899999999861 1111 223357889999999999999999999
Q ss_pred HHHHHH
Q 000176 1913 QKAMEY 1918 (1924)
Q Consensus 1913 ~rAle~ 1918 (1924)
+.-++|
T Consensus 482 eel~k~ 487 (652)
T KOG2376|consen 482 EELVKF 487 (652)
T ss_pred HHHHHh
Confidence 887764
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00074 Score=81.42 Aligned_cols=128 Identities=16% Similarity=0.126 Sum_probs=82.3
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCCC----hHHH
Q 000176 1753 LALLGLYERTEQNKLADELLYKMIKKFK------HSCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPRHK----HIKF 1820 (1924)
Q Consensus 1753 ~~l~~i~~~~gk~e~A~~~fe~~lk~~~------~~~~vw~~~a~~l~~~--~~~~A~~l~~ral~~~p~~~----~~~~ 1820 (1924)
...+.+|.+. ++++|.+.|++++..|. ....++..++.++... ++++|.++|++|+..+.... ...+
T Consensus 79 ~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~ 157 (282)
T PF14938_consen 79 EEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAEC 157 (282)
T ss_dssp HHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHH
Confidence 3333344333 44555555555554431 1133444555555554 78888888888888753321 2468
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 000176 1821 ISQTAILEFKNGVADRGRSMFEGILSEYPK----RT---DLWSIYLDQEIRLGDVDLIRGLFERAISL 1881 (1924)
Q Consensus 1821 ~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk----~~---dlw~~y~~le~k~gd~~~ar~lferal~~ 1881 (1924)
+.+.|.++.+.|++++|..+|+++....-. +. +.+...+-.++..||+..|+..|++....
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 899999999999999999999999876432 22 24455556677889999999999998873
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0013 Score=80.82 Aligned_cols=103 Identities=11% Similarity=0.112 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000176 1797 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1876 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lfe 1876 (1924)
...+|.++-++|+...|.+. .+....|....-.++++.|..+|++++..+|+..++|..++.+.+-.|+.++|+..++
T Consensus 319 ~~~~a~~~A~rAveld~~Da--~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDG--KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 56778888888888887774 5555556655666778888888888888888888888888888888888888888888
Q ss_pred HHHhcCCCchhHH-HHHHHHHHHHHHcC
Q 000176 1877 RAISLSLPPKKMK-FLFKKYLEYEKSVG 1903 (1924)
Q Consensus 1877 ral~~~~~pk~~k-~lw~~yl~~E~~~G 1903 (1924)
+++. +.|.+++ .+.+.|++++-.++
T Consensus 397 ~alr--LsP~~~~~~~~~~~~~~~~~~~ 422 (458)
T PRK11906 397 KSLQ--LEPRRRKAVVIKECVDMYVPNP 422 (458)
T ss_pred HHhc--cCchhhHHHHHHHHHHHHcCCc
Confidence 8888 6665543 45677776554343
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0012 Score=76.86 Aligned_cols=121 Identities=12% Similarity=0.098 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc-C--CHHHHHHH
Q 000176 1765 NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN-G--VADRGRSM 1840 (1924)
Q Consensus 1765 ~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~-g--~~e~Ar~l 1840 (1924)
.++...-.+.-+...|++.+-|..++..++.+ +++.|...|.+|++..|++ ++++..||..++.. | +-.+|+.+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n--~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN--PEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 45556666777888999999999999999999 9999999999999999988 59999999977643 3 46799999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1841 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1841 fe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
|.++|+.+|.+....+.++.-++..|++.+|...++..+. .+|++..
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~-~lp~~~~ 262 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLD-LLPADDP 262 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh-cCCCCCc
Confidence 9999999999999999999999999999999999999998 4555544
|
|
| >cd05700 S1_Rrp5_repeat_hs9 S1_Rrp5_repeat_hs9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0003 Score=59.88 Aligned_cols=64 Identities=23% Similarity=0.278 Sum_probs=56.8
Q ss_pred ccEEEEEEEEEeccee-EEEeccCCceeEEEeeeecCCcccccCCeEEEEEEEeeccccEEEEee
Q 000176 875 GSVIEGKVHESNDFGV-VVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSL 938 (1924)
Q Consensus 875 G~~v~g~V~~i~~~g~-~v~l~~~~~v~g~i~~~~l~~~~~~~G~~v~~~Vl~vd~~~~~v~ls~ 938 (1924)
|+..+.+|.++.++|- .++-++-.|++-..+.+|+.+..+.+|++++|+||++|.-+..|++|+
T Consensus 1 G~~L~LvV~~~~edgsv~fs~g~v~g~tv~AtryH~~g~nl~pGqK~kaviLhvD~l~~~VhVSl 65 (65)
T cd05700 1 GDQLKLVVQDVTEDGSVMFSGGQVSGLTVLASRYHKEGVNVTPGCKLKAVILHVDFVKSQVHVSL 65 (65)
T ss_pred CceEEEEEeeeccCCcEEEecCCcCCcEEEEEEEEecceecCCCceeEEEEEEEeeEEeEEEEeC
Confidence 6778899999888875 477776678888999999999999999999999999999999999985
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes Homo sapiens S1 repeat 9 (hs9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=5e-05 Score=91.75 Aligned_cols=77 Identities=18% Similarity=0.204 Sum_probs=70.0
Q ss_pred CccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeeccc
Q 000176 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833 (1924)
Q Consensus 757 ~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~ 833 (1924)
.++..|-+++|+|+++.++|+||+|+++..||+|.|+++-+.+..|++.+.+||.+.++.+..|+..+.++++-+..
T Consensus 664 ~~l~~g~vy~~tIt~~rd~G~~V~l~p~~~~Llh~sqL~~e~iakpsd~levGq~I~vk~ie~d~~g~~~ls~ralL 740 (760)
T KOG1067|consen 664 QDLEFGGVYTATITEIRDTGVMVELYPMQQGLLHNSQLDQEKIAKPSDLLEVGQEIQVKYIERDPRGGIMLSSRALL 740 (760)
T ss_pred cceEeeeEEEEEEeeecccceEEEecCCchhhccchhcccccccChHHHHhhcceeEEEEEeecCccceeehhhhhc
Confidence 45667999999999999999999999999999999999999999999999999999999999999887777665543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0047 Score=78.11 Aligned_cols=223 Identities=21% Similarity=0.162 Sum_probs=150.6
Q ss_pred CHHHHHHHHHHHHHc----------CCHHHHH--HHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 000176 1674 SSFVWIKYMAFMLSM----------ADVEKAR--SIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1741 (1924)
Q Consensus 1674 s~~~W~~y~~~~~~~----------~e~dkAr--~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vfer 1741 (1924)
+-..|-+.+.+.... |.+..|| ...+||.+. + ++ ...-.| -|..++| -.|+|..+|.+
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~-~--~e---~eakvA--vLAieLg--MlEeA~~lYr~ 825 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN-G--EE---DEAKVA--VLAIELG--MLEEALILYRQ 825 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC-C--cc---hhhHHH--HHHHHHh--hHHHHHHHHHH
Confidence 456888888887654 4444444 334444432 1 11 122333 4445556 45889999988
Q ss_pred HHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHH----------HHH
Q 000176 1742 ALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQR----------ALL 1810 (1924)
Q Consensus 1742 Al~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~r----------al~ 1810 (1924)
.-+ |-.|-.+|...|.+++|.++-+.--.. .-...|++|+.++... +.+.|.++|++ +|+
T Consensus 826 ckR-------~DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~ 896 (1416)
T KOG3617|consen 826 CKR-------YDLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLK 896 (1416)
T ss_pred HHH-------HHHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHH
Confidence 744 344555788888888988877653332 3566899999999988 99999999986 455
Q ss_pred hCCCC--------ChHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------------HHhCCCCHHHHHHHHHH
Q 000176 1811 SLPRH--------KHIKFISQTAILEFKNGVADRGRSMFEGI---------------------LSEYPKRTDLWSIYLDQ 1861 (1924)
Q Consensus 1811 ~~p~~--------~~~~~~~~~A~le~~~g~~e~Ar~lfe~a---------------------L~~~Pk~~dlw~~y~~l 1861 (1924)
-+|.. ....+|.-||++....|+.|.|...|+.| ++....+..+-+.++.+
T Consensus 897 e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~ 976 (1416)
T KOG3617|consen 897 EYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARM 976 (1416)
T ss_pred hChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHH
Confidence 55531 22479999999999999999999999988 33334455677888999
Q ss_pred HHHcCCHHHHHHHHHHHHhcC-----CCchhH-HHHHHHHH------------HHHHHcCCHHHHHHHHHHH
Q 000176 1862 EIRLGDVDLIRGLFERAISLS-----LPPKKM-KFLFKKYL------------EYEKSVGEEERIEYVKQKA 1915 (1924)
Q Consensus 1862 e~k~gd~~~ar~lferal~~~-----~~pk~~-k~lw~~yl------------~~E~~~G~~~~~~~v~~rA 1915 (1924)
|...|+..+|...|-||-+.+ ...+.+ ..+|+..+ .||..-|..+.|--+|.||
T Consensus 977 YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkA 1048 (1416)
T KOG3617|consen 977 YENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKA 1048 (1416)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhh
Confidence 999999999998888876421 111111 13555443 3566666888888887665
|
|
| >cd05791 S1_CSL4 S1_CSL4: CSL4, S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00017 Score=70.80 Aligned_cols=75 Identities=12% Similarity=0.145 Sum_probs=66.1
Q ss_pred CCCCCEEEEEEEEEeeceEEEEe--------CCCcEEEEECccCCCcccC--CCCccCCCCcEEEEEEEEEeCCCCEEEE
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIML--------SRKLDAKVLLSNLSDGYVE--SPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l--------~~~v~g~v~~selsd~~~~--~~~~~f~~G~~V~~kVl~vd~e~~ri~L 1434 (1924)
.++|++|-|+|++++...++|++ .....|.+|++++...+.. +..+.|++||.|+|+|++++. .+.+.|
T Consensus 4 P~~GDiVig~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~~dv~~~~~d~~~~~~~f~~GDiV~AkVis~~~-~~~~~L 82 (92)
T cd05791 4 PKVGSIVIARVTRINPRFAKVDILCVGGRPLKESFRGVIRKEDIRATEKDKVEMYKCFRPGDIVRAKVISLGD-ASSYYL 82 (92)
T ss_pred CCCCCEEEEEEEEEcCCEEEEEEEEecCeecCCCcccEEEHHHccccccchHHHHhhcCCCCEEEEEEEEcCC-CCCcEE
Confidence 37899999999999999999999 7788999999999887776 678899999999999999984 467999
Q ss_pred Eeeccc
Q 000176 1435 TLKTSD 1440 (1924)
Q Consensus 1435 Slk~~~ 1440 (1924)
|++...
T Consensus 83 st~~~~ 88 (92)
T cd05791 83 STAENE 88 (92)
T ss_pred EecCCC
Confidence 987643
|
S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In S. cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure". |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0013 Score=79.31 Aligned_cols=172 Identities=13% Similarity=0.130 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHhcCHHHHHHHH
Q 000176 1732 EEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFK------HSCKVWLRRVQRLLKQQQEGVQAVV 1805 (1924)
Q Consensus 1732 ~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~------~~~~vw~~~a~~l~~~~~~~A~~l~ 1805 (1924)
.+.|...|++| ++.|...+++++|.+.|.++...+. .....|...+..+.+.++++|...|
T Consensus 31 ~e~Aa~~y~~A-------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~ 97 (282)
T PF14938_consen 31 YEEAADLYEKA-------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECY 97 (282)
T ss_dssp HHHHHHHHHHH-------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHH-------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 36666666666 5678888888888888888776542 2244455555554444899999999
Q ss_pred HHHHHhCCCCC----hHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHH
Q 000176 1806 QRALLSLPRHK----HIKFISQTAILEFKN-GVADRGRSMFEGILSEYPK--R----TDLWSIYLDQEIRLGDVDLIRGL 1874 (1924)
Q Consensus 1806 ~ral~~~p~~~----~~~~~~~~A~le~~~-g~~e~Ar~lfe~aL~~~Pk--~----~dlw~~y~~le~k~gd~~~ar~l 1874 (1924)
++|+..+-... ...++...|.++... |++++|...|++++..+.. + ...+...+.++.+.|++++|..+
T Consensus 98 ~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~ 177 (282)
T PF14938_consen 98 EKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEI 177 (282)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99998753322 246889999999988 9999999999999987532 2 34688999999999999999999
Q ss_pred HHHHHhcCCC----chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1875 FERAISLSLP----PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916 (1924)
Q Consensus 1875 feral~~~~~----pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAl 1916 (1924)
|+++....+. .-..+.+|..-+-.....||.-.++..+++..
T Consensus 178 ~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 178 YEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHG
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999873222 22344444444445666799999998888764
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.038 Score=65.49 Aligned_cols=222 Identities=18% Similarity=0.159 Sum_probs=137.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHH
Q 000176 1682 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYE 1760 (1924)
Q Consensus 1682 ~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~ 1760 (1924)
++..+-.|+++.||.-|+-++. .| |.--+-+---|+.. ...| .-+.|+.+.++|....|.. =.|.+.+.-..
T Consensus 127 AQaal~eG~~~~Ar~kfeAMl~-dP---EtRllGLRgLyleA-qr~G--areaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~ 199 (531)
T COG3898 127 AQAALLEGDYEDARKKFEAMLD-DP---ETRLLGLRGLYLEA-QRLG--AREAARHYAERAAEKAPQLPWAARATLEARC 199 (531)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-Ch---HHHHHhHHHHHHHH-Hhcc--cHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 3334566777777777777773 23 21112222223332 3456 3477777777777777664 45666666666
Q ss_pred HhCChHHHHHHHHHHHHhcCCC------HHH--HHHHHHHHHhcCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC
Q 000176 1761 RTEQNKLADELLYKMIKKFKHS------CKV--WLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1832 (1924)
Q Consensus 1761 ~~gk~e~A~~~fe~~lk~~~~~------~~v--w~~~a~~l~~~~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g 1832 (1924)
..|+++.|+++.+......-.. ... ...-+.-++..+...|+..-..+++..|+- +..-..-|..+++.|
T Consensus 200 ~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdl--vPaav~AAralf~d~ 277 (531)
T COG3898 200 AAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDL--VPAAVVAARALFRDG 277 (531)
T ss_pred hcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcc--chHHHHHHHHHHhcc
Confidence 7777777777776544322111 111 111111111116677777777777777665 356666677777777
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---------------------------------HHcCCHHHHHHHHHHHH
Q 000176 1833 VADRGRSMFEGILSEYPKRTDLWSIYLDQE---------------------------------IRLGDVDLIRGLFERAI 1879 (1924)
Q Consensus 1833 ~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le---------------------------------~k~gd~~~ar~lferal 1879 (1924)
+.-++-.++|.+-+..|. .+||..|.+.- ...|++..||.--|-+.
T Consensus 278 ~~rKg~~ilE~aWK~ePH-P~ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~ 356 (531)
T COG3898 278 NLRKGSKILETAWKAEPH-PDIALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA 356 (531)
T ss_pred chhhhhhHHHHHHhcCCC-hHHHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 777888888887777765 57777776542 22366666777667666
Q ss_pred hcCCCchhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 000176 1880 SLSLPPKKMKFLFKKYLEYEKSV-GEEERIEYVKQKAME 1917 (1924)
Q Consensus 1880 ~~~~~pk~~k~lw~~yl~~E~~~-G~~~~~~~v~~rAle 1917 (1924)
. ..|.. .+|....+.|+-. ||..+++....+|+.
T Consensus 357 r--~~pre--s~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 357 R--EAPRE--SAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred h--hCchh--hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 6 55543 4788888997776 999999999988864
|
|
| >TIGR02063 RNase_R ribonuclease R | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00017 Score=97.44 Aligned_cols=72 Identities=28% Similarity=0.405 Sum_probs=64.0
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCC-CcEEEEECccCCCccc-----------CCCCccCCCCcEEEEEEEEEeCCCCEE
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSR-KLDAKVLLSNLSDGYV-----------ESPEKEFPIGKLVAGRVLSVEPLSKRV 1432 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~-~v~g~v~~selsd~~~-----------~~~~~~f~~G~~V~~kVl~vd~e~~ri 1432 (1924)
-++|+++.|.|++|+++|+||+|.+ +++|+||+++|++++. .+....|++||.|+++|.++|.++++|
T Consensus 625 ~~iG~~~~g~V~~v~~fGifV~L~~~~~eGlvhis~l~~d~~~~d~~~~~l~g~~~~~~~~lGd~V~Vkv~~vd~~~~~I 704 (709)
T TIGR02063 625 EKIGEEFEGVISGVTSFGLFVELENNTIEGLVHISTLKDDYYVFDEKGLALVGERTGKVFRLGDRVKVRVVKADLDTGKI 704 (709)
T ss_pred ccCCcEEEEEEEEEEeCCEEEEecCCceEEEEEeeecCCCcEEEcccceEEEeccCCcEECCCCEEEEEEEEEecccCeE
Confidence 4689999999999999999999987 7999999999997642 234567999999999999999999999
Q ss_pred EEEe
Q 000176 1433 EVTL 1436 (1924)
Q Consensus 1433 ~LSl 1436 (1924)
.+++
T Consensus 705 ~~~l 708 (709)
T TIGR02063 705 DFEL 708 (709)
T ss_pred EEEE
Confidence 9986
|
This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00016 Score=69.94 Aligned_cols=81 Identities=16% Similarity=0.217 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000176 1797 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1876 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lfe 1876 (1924)
+++.|..+|++++...|......+|..+|..+++.|++++|..++++ +...|.+.+.+..++..+++.|++++|+.+|+
T Consensus 4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 45666666666666666421335566666666666666666666666 55555555555555666666666666666666
Q ss_pred HH
Q 000176 1877 RA 1878 (1924)
Q Consensus 1877 ra 1878 (1924)
++
T Consensus 83 ~~ 84 (84)
T PF12895_consen 83 KA 84 (84)
T ss_dssp HH
T ss_pred cC
Confidence 54
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.073 Score=59.97 Aligned_cols=217 Identities=16% Similarity=0.119 Sum_probs=152.0
Q ss_pred CCchHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1657 APRTPDEFERLVRSSPN--SSFVWIKYMAFMLSMADVEKARSIAERALQT-INIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~--s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~-i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
...+...+...+...+. ....+...+..+...+.+..+...+..++.. .. ......|..+.......+ ..+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~ 112 (291)
T COG0457 39 LAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELL----PNLAEALLNLGLLLEALG--KYE 112 (291)
T ss_pred HHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhc----cchHHHHHHHHHHHHHHh--hHH
Confidence 34445556666655555 3677777777788888888888888888853 11 112345666666666666 347
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHH-HHHHhCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHhc-CHHHHHHHHHH
Q 000176 1734 AVVKVFQRALQYCDPK-KVHLALLG-LYERTEQNKLADELLYKMIKKFK---HSCKVWLRRVQRLLKQ-QQEGVQAVVQR 1807 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~-~i~~~l~~-i~~~~gk~e~A~~~fe~~lk~~~---~~~~vw~~~a~~l~~~-~~~~A~~l~~r 1807 (1924)
.+...+..++...+.. ..+..+.. ++...++++.|...|++++...+ .....+......+... .++.|...+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 113 EALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 7888888888766554 34444444 78888888888888888876433 2444455555555555 88888888888
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1808 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1808 al~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
++...+.. ....+...+..+...++++.|...+..++...|.....|......+...+..+.+...+.+++.
T Consensus 193 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 193 ALKLNPDD-DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHhhCccc-chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88887762 2467888888888888888888888888888887666666655555566778888888888887
|
|
| >KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=6.5e-05 Score=90.82 Aligned_cols=76 Identities=22% Similarity=0.276 Sum_probs=70.1
Q ss_pred ccCCCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCCCCCCCCCCCCCCCEEEEEEEEEcCCCCEEEEEEeeC
Q 000176 582 EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657 (1924)
Q Consensus 582 ~~~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~~ri~lS~k~~ 657 (1924)
++..|.++.++|+.+.++|+||+||++..|++|+++++..++.+|++.+.+||.+.++-+..|+..+++.+|-+..
T Consensus 665 ~l~~g~vy~~tIt~~rd~G~~V~l~p~~~~Llh~sqL~~e~iakpsd~levGq~I~vk~ie~d~~g~~~ls~ralL 740 (760)
T KOG1067|consen 665 DLEFGGVYTATITEIRDTGVMVELYPMQQGLLHNSQLDQEKIAKPSDLLEVGQEIQVKYIERDPRGGIMLSSRALL 740 (760)
T ss_pred ceEeeeEEEEEEeeecccceEEEecCCchhhccchhcccccccChHHHHhhcceeEEEEEeecCccceeehhhhhc
Confidence 4567999999999999999999999999999999999999999999999999999999999999988888876544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0014 Score=75.93 Aligned_cols=194 Identities=13% Similarity=0.079 Sum_probs=102.6
Q ss_pred HhcCCCCchHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcC
Q 000176 1652 LLEKDAPRTPDEFERLVRSS---PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYG 1728 (1924)
Q Consensus 1652 ~~~~~~p~a~~~ferll~~~---P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g 1728 (1924)
+...+...|+...|-.+... -++..+|+.+..| .+|++++|..+|+-+........ .+|+.+.--..-.|
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~f--hLgdY~~Al~~Y~~~~~~~~~~~-----el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYF--HLGDYEEALNVYTFLMNKDDAPA-----ELGVNLACCKFYLG 105 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHH--hhccHHHHHHHHHHHhccCCCCc-----ccchhHHHHHHHHH
Confidence 33444666666555544221 2356666666544 34566666666666554322211 13433322222223
Q ss_pred CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHH
Q 000176 1729 NPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQR 1807 (1924)
Q Consensus 1729 ~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~r 1807 (1924)
- ..+|..+.++|-+..--..+.+.++. +.++-++... |..-+. +..+--+.++...... .+++|.++|.|
T Consensus 106 ~--Y~eA~~~~~ka~k~pL~~RLlfhlah---klndEk~~~~-fh~~Lq---D~~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 106 Q--YIEAKSIAEKAPKTPLCIRLLFHLAH---KLNDEKRILT-FHSSLQ---DTLEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred H--HHHHHHHHhhCCCChHHHHHHHHHHH---HhCcHHHHHH-HHHHHh---hhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 1 24455444444221111122222221 2222222222 111111 1222233444444444 78999999999
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000176 1808 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1863 (1924)
Q Consensus 1808 al~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~ 1863 (1924)
.|.-+|... .+-...|..+++..-++-+.+++.--|+..|+++-+.+-.+--.+
T Consensus 177 vL~dn~ey~--alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~f 230 (557)
T KOG3785|consen 177 VLQDNPEYI--ALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLF 230 (557)
T ss_pred HHhcChhhh--hhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHh
Confidence 999887763 455566777888888999999999999999998766554444443
|
|
| >TIGR01953 NusA transcription termination factor NusA | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00013 Score=88.32 Aligned_cols=108 Identities=18% Similarity=0.361 Sum_probs=78.7
Q ss_pred CCCCCCCEEEEEEEEEeCCeEEE-EEcccccc----ch-hhHhhhhcccCCCcEEEEEEEEEEcce-EEEEEcCCeEEEe
Q 000176 541 KKFKVGAELVFRVLGVKSKRITV-THKKTLVK----SK-LAILSSYAEATDRLITHGWITKIEKHG-CFVRFYNGVQGFA 613 (1924)
Q Consensus 541 ~~f~vG~~vk~rVl~v~~~~l~l-T~K~~Lv~----~~-~~~~~~~~~~~~G~~~~G~V~~i~~~G-~~V~f~~~v~g~l 613 (1924)
..+++|+.++..+-.-+-+|+.+ +.|..+.. .. ..++..|.+ +.|+++.|+|.++.+.| +||++ |++.|||
T Consensus 82 ~~~~vGD~I~~~I~~~~fgR~aaq~aKqvi~Qkire~ere~i~~ey~~-k~GeiV~G~V~~v~~~g~v~Vdi-G~~ea~L 159 (341)
T TIGR01953 82 PDVQIGDEVKKEIPPENFGRIAAQTAKQVILQKIREAERERVYDEFSS-KEGEIISGTVKRVNRRGNLYVEL-GKTEGIL 159 (341)
T ss_pred cccccCCEEEEEecccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCEEEEEEEEEecCCcEEEEE-CCeEEEe
Confidence 35999999998764333333333 33333211 11 123444544 58999999999999988 69999 7899999
Q ss_pred eCcccCCCCCCCCCCCCCCCCEEEEEEEEEcCCC--CEEEEEEee
Q 000176 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS--RRINLSFMM 656 (1924)
Q Consensus 614 p~sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~--~ri~lS~k~ 656 (1924)
|.+|+. |.+.|++|+.++|.|++++... ..+.||.+.
T Consensus 160 P~~E~i------p~E~~~~Gd~ik~~V~~V~~~~kg~qIivSRt~ 198 (341)
T TIGR01953 160 PKKEQI------PGEKFRIGDRIKAYVYEVRKTAKGPQIILSRTH 198 (341)
T ss_pred cHHHcC------CCcCCCCCCEEEEEEEEEEcCCCCCeEEEEeCc
Confidence 999986 4567999999999999999554 579999864
|
This model describes NusA, or N utilization substance protein A, a bacterial transcription termination factor. It binds to RNA polymerase alpha subunit and promotes termination at certain RNA hairpin structures. It is named for the interaction in E. coli of phage lambda antitermination protein N with the N-utilization substance, consisting of NusA, NusB, NusE (ribosomal protein S10), and nusG. This model represents a region of NusA shared in all bacterial forms, and including an S1 (pfam00575) and a KH (pfam00013) RNA binding domains. Proteobacterial forms have an additional C-terminal region, not included in this model, with two repeats of 50-residue domain rich in acidic amino acids. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0011 Score=79.76 Aligned_cols=139 Identities=13% Similarity=0.143 Sum_probs=106.4
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CH
Q 000176 1720 YFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQ 1798 (1924)
Q Consensus 1720 yl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~ 1798 (1924)
-.|.+.+.+++ ..|...|+||+...+.. ++-+.++.... ..+ -..++++++..+++. .+
T Consensus 214 ~Gn~~fK~gk~--~~A~~~Yerav~~l~~~-----------~~~~~ee~~~~-~~~------k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 214 RGNVLFKEGKF--KLAKKRYERAVSFLEYR-----------RSFDEEEQKKA-EAL------KLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhhHHHhhchH--HHHHHHHHHHHHHhhcc-----------ccCCHHHHHHH-HHH------HHHHhhHHHHHHHhhhhH
Confidence 46666677744 88888888887664411 11111111111 111 234678889999999 99
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHH
Q 000176 1799 EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD-LIRGLFER 1877 (1924)
Q Consensus 1799 ~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~-~ar~lfer 1877 (1924)
.+|.....++|...|.+ ++++++-|+.+...|+++.||..|+++++..|.+.++-..++.+-.+...+. +.+.+|.+
T Consensus 274 ~~Ai~~c~kvLe~~~~N--~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNN--VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred HHHHHHHHHHHhcCCCc--hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877 6999999999999999999999999999999999999999988887766554 46888988
Q ss_pred HHh
Q 000176 1878 AIS 1880 (1924)
Q Consensus 1878 al~ 1880 (1924)
++.
T Consensus 352 mF~ 354 (397)
T KOG0543|consen 352 MFA 354 (397)
T ss_pred Hhh
Confidence 887
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0011 Score=73.44 Aligned_cols=96 Identities=10% Similarity=-0.033 Sum_probs=63.1
Q ss_pred HHHHHHHHHhcCCCH---HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHhc-CHHHHHHHHHH
Q 000176 1735 VVKVFQRALQYCDPK---KVHLALLGLYERTEQNKLADELLYKMIKKFKH---SCKVWLRRVQRLLKQ-QQEGVQAVVQR 1807 (1924)
Q Consensus 1735 a~~vferAl~~~~~~---~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~---~~~vw~~~a~~l~~~-~~~~A~~l~~r 1807 (1924)
+...+.+.++..+.. ..|+.++..+...+++++|...|++++...++ ...+|..++..+... ++++|...|++
T Consensus 18 ~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 97 (168)
T CHL00033 18 VADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQ 97 (168)
T ss_pred chhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444444433332 66777777777777777777777777766543 234677777777777 77777777777
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHcC
Q 000176 1808 ALLSLPRHKHIKFISQTAILEFKNG 1832 (1924)
Q Consensus 1808 al~~~p~~~~~~~~~~~A~le~~~g 1832 (1924)
++...|.. ...+...|.++...|
T Consensus 98 Al~~~~~~--~~~~~~la~i~~~~~ 120 (168)
T CHL00033 98 ALERNPFL--PQALNNMAVICHYRG 120 (168)
T ss_pred HHHhCcCc--HHHHHHHHHHHHHhh
Confidence 77776655 356667777776433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0021 Score=71.45 Aligned_cols=100 Identities=12% Similarity=0.030 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKH---SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1825 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~---~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A 1825 (1924)
..|+.++..|...|++++|...|+++++..++ ...+|..++..+... ++++|...|++++...|.. ...+..+|
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ--PSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--HHHHHHHH
Confidence 45666677777777777777777777765433 245677777777777 7777777777777776655 46666667
Q ss_pred HHHHHcCC--------------HHHHHHHHHHHHHhCCCC
Q 000176 1826 ILEFKNGV--------------ADRGRSMFEGILSEYPKR 1851 (1924)
Q Consensus 1826 ~le~~~g~--------------~e~Ar~lfe~aL~~~Pk~ 1851 (1924)
.++...|+ +++|..+|++++...|++
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 77666655 466777777777777776
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.008 Score=68.76 Aligned_cols=156 Identities=15% Similarity=0.107 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChH-HHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKH---SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI-KFISQT 1824 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~---~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~-~~~~~~ 1824 (1924)
+.++..+..+.+.|++.+|...|+.+...||. .+.+++.++..+++. +++.|...|++-++.+|.+.++ .++...
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 34455556677889999999999999998864 367788888888888 9999999999999999988654 355555
Q ss_pred HHHHHHc-----------CCHHHHHHHHHHHHHhCCCCHH----------HHHH-------HHHHHHHcCCHHHHHHHHH
Q 000176 1825 AILEFKN-----------GVADRGRSMFEGILSEYPKRTD----------LWSI-------YLDQEIRLGDVDLIRGLFE 1876 (1924)
Q Consensus 1825 A~le~~~-----------g~~e~Ar~lfe~aL~~~Pk~~d----------lw~~-------y~~le~k~gd~~~ar~lfe 1876 (1924)
|...+.. +...+|...|+.++..+|++.. +... -++++.+.|.+..|..-|+
T Consensus 86 g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~ 165 (203)
T PF13525_consen 86 GLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQ 165 (203)
T ss_dssp HHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHH
T ss_pred HHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 5544322 2356889999999999998522 2222 2455667899999999999
Q ss_pred HHHhcCCCchh--HHHHHHHHHHHHHHcCCHHH
Q 000176 1877 RAISLSLPPKK--MKFLFKKYLEYEKSVGEEER 1907 (1924)
Q Consensus 1877 ral~~~~~pk~--~k~lw~~yl~~E~~~G~~~~ 1907 (1924)
.++. ..|.. ....+...+.-..+.|..+.
T Consensus 166 ~v~~--~yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 166 YVIE--NYPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHH--HSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHH--HCCCCchHHHHHHHHHHHHHHhCChHH
Confidence 9998 33322 22334444455555676653
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0003 Score=65.19 Aligned_cols=63 Identities=17% Similarity=0.210 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHh
Q 000176 1818 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG-DVDLIRGLFERAIS 1880 (1924)
Q Consensus 1818 ~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~g-d~~~ar~lferal~ 1880 (1924)
..+|...|..++..|++++|...|++++..+|++..+|..++..+.+.| ++++|...|+++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999 79999999999998
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0003 Score=64.89 Aligned_cols=52 Identities=21% Similarity=0.330 Sum_probs=35.0
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
++.|++++|..+|++++..+|++.++|..++.++++.|++++|+.+|++++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456667777777777777777767777777777777777777777776666
|
... |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0011 Score=79.67 Aligned_cols=154 Identities=13% Similarity=0.122 Sum_probs=105.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHH
Q 000176 1685 MLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK---KVHLALLGLYER 1761 (1924)
Q Consensus 1685 ~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~---~i~~~l~~i~~~ 1761 (1924)
+...|+++.|.+++.+. ...|. -.-.+.+.+..+ +.+.|.+.++++-+..++. .+..+|.+++.-
T Consensus 112 ~~~~~~~~~AL~~l~~~-------~~lE~---~al~Vqi~L~~~--R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g 179 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG-------GSLEL---LALAVQILLKMN--RPDLAEKELKNMQQIDEDSILTQLAEAWVNLATG 179 (290)
T ss_dssp HCCCCHHHHHHCCCTTT-------TCHHH---HHHHHHHHHHTT---HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHcc-------CcccH---HHHHHHHHHHcC--CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhC
Confidence 34457766666555443 22332 223334455666 5688888888887776664 556666666655
Q ss_pred hCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCH-HHHHH
Q 000176 1762 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA-DRGRS 1839 (1924)
Q Consensus 1762 ~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~-e~Ar~ 1839 (1924)
.+++++|.-+|+.+..+|+.++.++..++...+.+ ++++|.++++.|+...|.+ +.++.+.+.+....|+. +.+..
T Consensus 180 ~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~--~d~LaNliv~~~~~gk~~~~~~~ 257 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND--PDTLANLIVCSLHLGKPTEAAER 257 (290)
T ss_dssp TTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH--HHHHHHHHHHHHHTT-TCHHHHH
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC--HHHHHHHHHHHHHhCCChhHHHH
Confidence 56788888888888888888888888888888888 8888888888888777665 57888888887777776 67777
Q ss_pred HHHHHHHhCCCCH
Q 000176 1840 MFEGILSEYPKRT 1852 (1924)
Q Consensus 1840 lfe~aL~~~Pk~~ 1852 (1924)
.++.+-..+|...
T Consensus 258 ~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 258 YLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHCHHHTTTSH
T ss_pred HHHHHHHhCCCCh
Confidence 8888777888753
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG1095 RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00029 Score=75.73 Aligned_cols=75 Identities=24% Similarity=0.458 Sum_probs=63.0
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccC-C----------CCccCCCCcEEEEEEEEEeCCC-----C
Q 000176 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE-S----------PEKEFPIGKLVAGRVLSVEPLS-----K 1430 (1924)
Q Consensus 1367 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~-~----------~~~~f~~G~~V~~kVl~vd~e~-----~ 1430 (1924)
.|++|.|.|+++.++|+||.+| -.+||+|.+++.|.|+. + -+..|.+|+.|++||+.+.... .
T Consensus 81 ~gEVV~GeVv~~~~~G~fV~ig-p~dglvh~sqi~dd~~~~d~~~~~~~g~~tk~~i~~gd~VR~RIv~~s~~~~~~~~~ 159 (183)
T COG1095 81 RGEVVEGEVVEVVEFGAFVRIG-PLDGLVHVSQIMDDYIDYDEKNKVLIGEETKRVLKVGDKVRARIVGVSLKSRRPRES 159 (183)
T ss_pred cccEEEEEEEEEeecceEEEec-cccccccHhhccCcccccCcccceeeecccceEEecCCEEEEEEEEEecccCccccc
Confidence 6899999999999999999999 68999999999998532 1 2337889999999999887655 6
Q ss_pred EEEEEeeccccc
Q 000176 1431 RVEVTLKTSDSR 1442 (1924)
Q Consensus 1431 ri~LSlk~~~~~ 1442 (1924)
+|.+|+|+.-..
T Consensus 160 ~I~lTmrq~~LG 171 (183)
T COG1095 160 KIGLTMRQPGLG 171 (183)
T ss_pred eEEEEeccccCC
Confidence 899999986543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00041 Score=63.42 Aligned_cols=62 Identities=18% Similarity=0.196 Sum_probs=38.9
Q ss_pred HHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000176 1788 RRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1851 (1924)
Q Consensus 1788 ~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~ 1851 (1924)
.++..+++. ++++|...|+++++..|.+ ..+|..+|.+++..|++++|+..|++++..+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDN--PEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTH--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345555556 6666666666666666654 4666666666666666666666666666666654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00033 Score=64.59 Aligned_cols=65 Identities=20% Similarity=0.268 Sum_probs=50.5
Q ss_pred Hhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000176 1794 LKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1860 (1924)
Q Consensus 1794 ~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~ 1860 (1924)
++. ++++|.++|++++...|.+ ..++..+|.++++.|++++|+.+|++++...|++..+|..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDN--PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTS--HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 344 7888888888888888876 4788888888888888888888888888888887666665554
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0035 Score=74.69 Aligned_cols=170 Identities=14% Similarity=0.025 Sum_probs=134.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH--
Q 000176 1672 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-- 1749 (1924)
Q Consensus 1672 P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-- 1749 (1924)
|.+...-+--+.++.-+++++.|..+.-+.++..+... .-.|++=...+.+-..+.+..-|++|+.+.|+.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~-------~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~ 238 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNA-------EALYVRGLCLYYNDNADKAINHFQQALRLDPDHQK 238 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchh-------HHHHhcccccccccchHHHHHHHhhhhccChhhhh
Confidence 33344444456666788999999999999998665432 222332222222114588999999999998762
Q ss_pred -----------HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCC
Q 000176 1750 -----------KVHLALLGLYERTEQNKLADELLYKMIKKFKH----SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1813 (1924)
Q Consensus 1750 -----------~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~----~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p 1813 (1924)
+.|..-++-..+.|++..|.+.|..++...|. +..+|.+.+....+. +..+|..-..+|++..+
T Consensus 239 sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~ 318 (486)
T KOG0550|consen 239 SKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS 318 (486)
T ss_pred HHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH
Confidence 67888888889999999999999999998864 467788888888888 99999999999999987
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000176 1814 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1850 (1924)
Q Consensus 1814 ~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk 1850 (1924)
.. ++.+..-|+.+...++++.|...|+++++....
T Consensus 319 sy--ikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 319 SY--IKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 66 789999999999999999999999999987655
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.11 Score=58.63 Aligned_cols=223 Identities=18% Similarity=0.137 Sum_probs=154.1
Q ss_pred cCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh--cCC-CHHHHHHHHHHHHHhCC
Q 000176 1688 MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ--YCD-PKKVHLALLGLYERTEQ 1764 (1924)
Q Consensus 1688 ~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~--~~~-~~~i~~~l~~i~~~~gk 1764 (1924)
...+..+...+..++...+... ....+..........+ ....+...+..++. ..+ ....|..++.++...++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (291)
T COG0457 36 LGELAEALELLEEALELLPNSD---LAGLLLLLALALLKLG--RLEEALELLEKALELELLPNLAEALLNLGLLLEALGK 110 (291)
T ss_pred HhhHHHHHHHHHHHHhcCcccc---chHHHHHHHHHHHHcc--cHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhh
Confidence 3556666666666665544320 1124444555555566 44777778888875 233 34788888888888888
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHhc-CHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHHHcCCHHHHHHHH
Q 000176 1765 NKLADELLYKMIKKFKHSCKVWLRRVQ-RLLKQ-QQEGVQAVVQRALLSLPR-HKHIKFISQTAILEFKNGVADRGRSMF 1841 (1924)
Q Consensus 1765 ~e~A~~~fe~~lk~~~~~~~vw~~~a~-~l~~~-~~~~A~~l~~ral~~~p~-~~~~~~~~~~A~le~~~g~~e~Ar~lf 1841 (1924)
+..+...+..+....+.....+..+.. .+... +++.|...|++++...|. ......+...+..+...++++.|...+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 190 (291)
T COG0457 111 YEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELL 190 (291)
T ss_pred HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHH
Confidence 889999998888766655455555555 56666 899999999998875552 233456666666677788899999999
Q ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1842 EGILSEYPK-RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1842 e~aL~~~Pk-~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
.+++...|. ....|......+...++++.+...+.+++. ..+.....++.....+. ..|..+.+...+.++++.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 191 EKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDNAEALYNLALLLL-ELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCcccHHHHhhHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 999988888 578888888888888888899999998888 55442222333334444 667788888888777654
|
|
| >PRK12327 nusA transcription elongation factor NusA; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00018 Score=87.66 Aligned_cols=106 Identities=16% Similarity=0.296 Sum_probs=77.2
Q ss_pred CCCCCCEEEEEEEEEe-CCeEEEEEccccccchh-----hHhhhhcccCCCcEEEEEEEEEEcceEEEEEcCCeEEEeeC
Q 000176 542 KFKVGAELVFRVLGVK-SKRITVTHKKTLVKSKL-----AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615 (1924)
Q Consensus 542 ~f~vG~~vk~rVl~v~-~~~l~lT~K~~Lv~~~~-----~~~~~~~~~~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~ 615 (1924)
..++|+.++..+-..+ .+....+.|+.+...-. .++..|.+ +.|+++.|+|.++...|+||++ |++.||||.
T Consensus 86 ~~~vGD~i~~~I~~~~fgR~aaq~akqvI~Qkire~ere~v~~ef~~-k~GeiV~G~V~~~~~~~~~Vdl-g~vEa~LP~ 163 (362)
T PRK12327 86 AYELGDVIEIEVTPKDFGRIAAQTAKQVIMQRLREAEREIIYNEFSE-REGDIVTGVVQRRDNRFVYVNL-GKIEAVLPP 163 (362)
T ss_pred cccCCCEEEEecCcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCEEEEEEEEEeCCcEEEEe-CCeEEEecH
Confidence 5889999998775442 23333344444433211 22333321 6899999999999999999999 679999999
Q ss_pred cccCCCCCCCCCCCCCCCCEEEEEEEEEcCCCC--EEEEEEe
Q 000176 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR--RINLSFM 655 (1924)
Q Consensus 616 sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~~--ri~lS~k 655 (1924)
+++. |.+.|++|+.++|.|++++.+.+ .+.||..
T Consensus 164 ~E~i------p~e~~~~Gd~Ika~V~~V~~~~kgp~IivSRt 199 (362)
T PRK12327 164 AEQI------PGETYKHGDRIKVYVVKVEKTTKGPQIFVSRT 199 (362)
T ss_pred HHcC------CCCCCCCCCEEEEEEEEEecCCCCCeEEEEeC
Confidence 8884 45789999999999999996654 5777764
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0059 Score=75.33 Aligned_cols=155 Identities=14% Similarity=0.046 Sum_probs=85.2
Q ss_pred HhCCCCH---HHH--HHHHHHHH--HcC---CHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHH
Q 000176 1669 RSSPNSS---FVW--IKYMAFML--SMA---DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKV 1738 (1924)
Q Consensus 1669 ~~~P~s~---~~W--~~y~~~~~--~~~---e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~v 1738 (1924)
..-|.+. ++| -.|+.-.. ..+ ..+.|..+|+||+.+-+...++-...-|.++..+...+..+..
T Consensus 242 r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~------ 315 (458)
T PRK11906 242 RLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSE------ 315 (458)
T ss_pred cCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCC------
Confidence 3346666 778 55554432 222 5778889999999433333244444567776666553321100
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh
Q 000176 1739 FQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH 1817 (1924)
Q Consensus 1739 ferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~ 1817 (1924)
......+|.++-++++...+.++.+...++..+.-. +++.|..+|+||+..+|+.
T Consensus 316 ----------------------~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~-- 371 (458)
T PRK11906 316 ----------------------LELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDI-- 371 (458)
T ss_pred ----------------------chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCcc--
Confidence 000112344444455555555555555555544444 5666666666666666655
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000176 1818 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1853 (1924)
Q Consensus 1818 ~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d 1853 (1924)
..+|+..|.+++-.|+.++|+..++++++.+|-+..
T Consensus 372 A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 372 ASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence 356666666666666666666666666666665543
|
|
| >PRK11642 exoribonuclease R; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00047 Score=93.17 Aligned_cols=73 Identities=25% Similarity=0.399 Sum_probs=64.3
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCC-cEEEEECccCCCcc-cC----------CCCccCCCCcEEEEEEEEEeCCCCEEE
Q 000176 1366 SPNMIVQGYVKNVTSKGCFIMLSRK-LDAKVLLSNLSDGY-VE----------SPEKEFPIGKLVAGRVLSVEPLSKRVE 1433 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~fV~l~~~-v~g~v~~selsd~~-~~----------~~~~~f~~G~~V~~kVl~vd~e~~ri~ 1433 (1924)
++|+++.|.|++|+++|+||+|... ++|+||+++|.|+| .- +....|++||.|+++|.++|.++++|.
T Consensus 642 ~iGe~f~G~Is~V~~fGifVeL~~~~vEGlV~vs~L~~d~y~~d~~~~~L~g~~~~~~~~lGD~V~VkV~~vD~~~rkI~ 721 (813)
T PRK11642 642 QVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESSGQTYRLGDRVEVRVEAVNMDERKID 721 (813)
T ss_pred cCCcEEEEEEEEeecCceEEEECCCCeeeeEEEeecCCcceEecchheEEecccCCcEECCCCEEEEEEEEeecCCCeEE
Confidence 6899999999999999999999875 99999999999763 21 234679999999999999999999999
Q ss_pred EEeec
Q 000176 1434 VTLKT 1438 (1924)
Q Consensus 1434 LSlk~ 1438 (1924)
+++-.
T Consensus 722 f~l~~ 726 (813)
T PRK11642 722 FSLIS 726 (813)
T ss_pred EEEec
Confidence 99853
|
|
| >PHA02858 EIF2a-like PKR inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00048 Score=63.59 Aligned_cols=74 Identities=15% Similarity=0.277 Sum_probs=67.1
Q ss_pred ccccCCCcEEEEEEEEeecceEEEEEecCceeEEee-ccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEec
Q 000176 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH-VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527 (1924)
Q Consensus 1452 ~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h-~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lsl 1527 (1924)
+.=-.+|+.+. .|+.+.+.|++|.|-+-+++|++. .+|++..++..+.+.+ +|-.+.++|+.+|+++|=|-||.
T Consensus 11 y~~P~v~dvv~-~Vv~i~d~~~YV~LleY~iegmIl~~selsr~rirsi~kll-VGk~e~v~ViRVDk~KGYIDLs~ 85 (86)
T PHA02858 11 YVFPNINEVTK-GIVFVKDNIFYVKLIDYGLEALIVNYVNVNADRAEKLKKKL-VGKTINVQVIRTDKLKGYIDVRH 85 (86)
T ss_pred EecCCCCeEEE-EEEEEeccEEEEEEecCccceEEecHHHHhHHHHHhhhhhh-cCCeeEEEEEEECCCCCEEEeEc
Confidence 33456899998 899999999999998778999999 9999999999999999 99999999999999999998873
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.065 Score=69.94 Aligned_cols=227 Identities=15% Similarity=0.175 Sum_probs=151.0
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1736 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~ 1736 (1924)
+-.|-+..+++++.+||...+-.--+-.++++|..++|..+.+ ++...+.. +.. ....+-+.+...+ ..++|.
T Consensus 25 fkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le-~~~~~~~~-D~~---tLq~l~~~y~d~~--~~d~~~ 97 (932)
T KOG2053|consen 25 FKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLE-ALYGLKGT-DDL---TLQFLQNVYRDLG--KLDEAV 97 (932)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHh-hhccCCCC-chH---HHHHHHHHHHHHh--hhhHHH
Confidence 7778888999999999988888777788899999999995554 45444433 222 2223334445556 348999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc--CHH---------HHHHHH
Q 000176 1737 KVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ--QQE---------GVQAVV 1805 (1924)
Q Consensus 1737 ~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~--~~~---------~A~~l~ 1805 (1924)
.+|+||++.+|..+..+.|...|.+-+.|.+-.++--++-|.+|..+-.+......+++. ..+ -|+..+
T Consensus 98 ~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 98 HLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 999999999999877777777777777666666655566667776554444444444443 332 355566
Q ss_pred HHHHHhC-CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 000176 1806 QRALLSL-PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE--YPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1882 (1924)
Q Consensus 1806 ~ral~~~-p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~--~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~ 1882 (1924)
+..++.- +-....++...+ ......|.+++|...+..-+.. .+-+..+-+.-++++...+++.+.-++-.|++...
T Consensus 178 ~~~l~~~gk~~s~aE~~Lyl-~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEIILYL-LILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHhccCCccchHHHHHHHH-HHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 6666554 212112333333 3334567899999999665543 34455667778889999999999888888888832
Q ss_pred CCchhHHHHHHHHHH
Q 000176 1883 LPPKKMKFLFKKYLE 1897 (1924)
Q Consensus 1883 ~~pk~~k~lw~~yl~ 1897 (1924)
+ ++ |+.|.+
T Consensus 257 -~-Dd----y~~~~~ 265 (932)
T KOG2053|consen 257 -N-DD----YKIYTD 265 (932)
T ss_pred -C-cc----hHHHHH
Confidence 2 22 666555
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00019 Score=81.66 Aligned_cols=99 Identities=17% Similarity=0.269 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHH
Q 000176 1799 EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI-RLGDVDLIRGLFER 1877 (1924)
Q Consensus 1799 ~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~-k~gd~~~ar~lfer 1877 (1924)
.+..-+|.|+...+|++ +.+|..|+..-.+.+.+.....+|..+|+.+|.+.|+|...+++++ -.++++.+|++|.+
T Consensus 90 qk~~f~~~R~tnkff~D--~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~ 167 (435)
T COG5191 90 QKKIFELYRSTNKFFND--PKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLK 167 (435)
T ss_pred ceeeEeeehhhhcCCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHh
Confidence 34445678888888887 6999999999999999999999999999999999999999888776 57899999999999
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHc
Q 000176 1878 AISLSLPPKKMKFLFKKYLEYEKSV 1902 (1924)
Q Consensus 1878 al~~~~~pk~~k~lw~~yl~~E~~~ 1902 (1924)
++. +.++.+ .+|..|..||..+
T Consensus 168 glR--~N~~~p-~iw~eyfr~El~y 189 (435)
T COG5191 168 GLR--MNSRSP-RIWIEYFRMELMY 189 (435)
T ss_pred hhc--cCCCCc-hHHHHHHHHHHHH
Confidence 999 888888 6999999998765
|
|
| >TIGR00358 3_prime_RNase VacB and RNase II family 3'-5' exoribonucleases | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0005 Score=91.76 Aligned_cols=71 Identities=24% Similarity=0.380 Sum_probs=63.2
Q ss_pred CCCCEEEEEEEEEeeceEEEEeC-CCcEEEEECccCCCcc-c----------CCCCccCCCCcEEEEEEEEEeCCCCEEE
Q 000176 1366 SPNMIVQGYVKNVTSKGCFIMLS-RKLDAKVLLSNLSDGY-V----------ESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~fV~l~-~~v~g~v~~selsd~~-~----------~~~~~~f~~G~~V~~kVl~vd~e~~ri~ 1433 (1924)
++|+++.|.|++++++|+||.|+ .+++|+||++++.|++ . ++....|++||.|+++|.++|.++++|.
T Consensus 571 ~iG~~~~g~I~~v~~~GifV~L~~~~veGlV~~s~l~~d~y~~d~~~~~l~g~~~~~~~~lGD~V~Vki~~vd~~~~~I~ 650 (654)
T TIGR00358 571 KVGTEFSGEISSVTRFGMFVRLDDNGIDGLIHISTLHNDYYVFDQEKMALIGKGTGKVYRIGDRVTVKLTEVNMETRSII 650 (654)
T ss_pred CCCcEEEEEEEeEEcCcEEEEecCCceEEEEEeEeCCCcceEEeccccEEEeccCCcEECCCCEEEEEEEEEecccCeEE
Confidence 57999999999999999999998 7899999999999864 1 2234679999999999999999999999
Q ss_pred EEe
Q 000176 1434 VTL 1436 (1924)
Q Consensus 1434 LSl 1436 (1924)
+++
T Consensus 651 f~l 653 (654)
T TIGR00358 651 FEL 653 (654)
T ss_pred EEE
Confidence 886
|
This model is defined to identify a pair of paralogous 3-prime exoribonucleases in E. coli, plus the set of proteins apparently orthologous to one or the other in other eubacteria. VacB was characterized originally as required for the expression of virulence genes, but is now recognized as the exoribonuclease RNase R (Rnr). Its paralog in E. coli and H. influenzae is designated exoribonuclease II (Rnb). Both are involved in the degradation of mRNA, and consequently have strong pleiotropic effects that may be difficult to disentangle. Both these proteins share domain-level similarity (RNB, S1) with a considerable number of other proteins, and full-length similarity scoring below the trusted cutoff to proteins associated with various phenotypes but uncertain biochemistry; it may be that these latter proteins are also 3-prime exoribonucleases. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.027 Score=66.14 Aligned_cols=160 Identities=13% Similarity=0.032 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChH-HHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKV---WLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI-KFISQT 1824 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~v---w~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~-~~~~~~ 1824 (1924)
..++..+.-+...|++++|.+.|+.++..+|.++-. .+.++..+++. +++.|...|++.++..|++..+ .++...
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence 445556666777899999999999999988876443 36677777788 9999999999999999988654 356666
Q ss_pred HHHHHHcC---------------CH---HHHHHHHHHHHHhCCCCHH---HHH--------------HHHHHHHHcCCHH
Q 000176 1825 AILEFKNG---------------VA---DRGRSMFEGILSEYPKRTD---LWS--------------IYLDQEIRLGDVD 1869 (1924)
Q Consensus 1825 A~le~~~g---------------~~---e~Ar~lfe~aL~~~Pk~~d---lw~--------------~y~~le~k~gd~~ 1869 (1924)
|...+..+ |. ..|...|+++++.+|+..- ++. .-+.++.+.|.+.
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~ 192 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYV 192 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence 65433222 22 3566889999999998532 111 2234566789999
Q ss_pred HHHHHHHHHHhcCCCch---hHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000176 1870 LIRGLFERAISLSLPPK---KMKFLFKKYLEYEKSVGEEERIEYVK 1912 (1924)
Q Consensus 1870 ~ar~lferal~~~~~pk---~~k~lw~~yl~~E~~~G~~~~~~~v~ 1912 (1924)
-|..-|+.++. ..|. ..+.+|. ...-....|..+.+..+.
T Consensus 193 AA~~r~~~v~~--~Yp~t~~~~eal~~-l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 193 AVVNRVEQMLR--DYPDTQATRDALPL-MENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHHHHHHHH--HCCCCchHHHHHHH-HHHHHHHcCChHHHHHHH
Confidence 99999999997 2222 2222222 223344567777666544
|
|
| >PRK08563 DNA-directed RNA polymerase subunit E'; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00073 Score=76.03 Aligned_cols=77 Identities=19% Similarity=0.442 Sum_probs=64.6
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccC-----------CCCccCCCCcEEEEEEEEEeCCCC----
Q 000176 1366 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE-----------SPEKEFPIGKLVAGRVLSVEPLSK---- 1430 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~-----------~~~~~f~~G~~V~~kVl~vd~e~~---- 1430 (1924)
.+|+++.|.|++++++|+||+++ .++|+++.+++.+.+.. +....|++|+.|+++|++++.+++
T Consensus 80 ~~GEVv~g~V~~v~~~Gi~V~lg-~~~g~v~~~~l~~~~~~~d~~~~~~~~~~~~~~i~~Gd~VrvrV~~v~~~~~~~~~ 158 (187)
T PRK08563 80 ELQEVVEGEVVEVVEFGAFVRIG-PVDGLLHISQIMDDYISYDPKNGRLIGKESKRVLKVGDVVRARIVAVSLKERRPRG 158 (187)
T ss_pred cCCCEEEEEEEEEEccEEEEEEe-CceEEEEcHHcCCCceEEccccceEEEccCCeEEcCCCEEEEEEEEEEcccCCCCC
Confidence 47999999999999999999998 49999999999876432 234578999999999999997543
Q ss_pred -EEEEEeecccccc
Q 000176 1431 -RVEVTLKTSDSRT 1443 (1924)
Q Consensus 1431 -ri~LSlk~~~~~~ 1443 (1924)
+|.+|++..-..+
T Consensus 159 ~~I~ls~~~~~LG~ 172 (187)
T PRK08563 159 SKIGLTMRQPGLGK 172 (187)
T ss_pred CEEEEEecCCCCCc
Confidence 8999999865543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.012 Score=76.43 Aligned_cols=156 Identities=10% Similarity=0.016 Sum_probs=91.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH--Hc---CCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHH-HcCCCCHHH
Q 000176 1661 PDEFERLVRSSPNSSFVWIKYMAFML--SM---ADVEKARSIAERALQTINIREENEKLNIWVAYFNLEN-EYGNPPEEA 1734 (1924)
Q Consensus 1661 ~~~ferll~~~P~s~~~W~~y~~~~~--~~---~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~-~~g~~~~e~ 1734 (1924)
....+++...-|.+..+|-.|+.... .. .+.++|+.+|++|++..|... ....++++..... .+.. ..+
T Consensus 323 ~~e~~~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a---~a~A~la~~~~~~~~~~~-~~~- 397 (517)
T PRK10153 323 ERMQERLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFT---YAQAEKALADIVRHSQQP-LDE- 397 (517)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHHHhcCC-ccH-
Confidence 33445555667888889988877743 22 348899999999999888432 2222222222111 1110 000
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 000176 1735 VVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK--FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1811 (1924)
Q Consensus 1735 a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~--~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~ 1811 (1924)
.+...+.+..++++.. .+..+.+|..++..+... ++++|...|++|+..
T Consensus 398 ----------------------------~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L 449 (517)
T PRK10153 398 ----------------------------KQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL 449 (517)
T ss_pred ----------------------------HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 0112233333333332 234455666666655555 777777777777777
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 000176 1812 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT 1852 (1924)
Q Consensus 1812 ~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~ 1852 (1924)
.|. ...|..+|.++...|++++|...|++++...|...
T Consensus 450 ~ps---~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 450 EMS---WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 762 35777777777777777777777777777777644
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00071 Score=65.48 Aligned_cols=80 Identities=15% Similarity=0.048 Sum_probs=61.5
Q ss_pred hCChHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHH
Q 000176 1762 TEQNKLADELLYKMIKKFKH--SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGR 1838 (1924)
Q Consensus 1762 ~gk~e~A~~~fe~~lk~~~~--~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar 1838 (1924)
.++++.|..+|++++...+. ....|+.+|..+++. ++++|..++++ ++..+. ++.....+|+.+++.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~--~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS--NPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC--HHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC--CHHHHHHHHHHHHHhCCHHHHH
Confidence 57788888888888887763 466788888888888 88888888888 555543 3577777788888899999998
Q ss_pred HHHHHH
Q 000176 1839 SMFEGI 1844 (1924)
Q Consensus 1839 ~lfe~a 1844 (1924)
..|+++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 888874
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0068 Score=62.60 Aligned_cols=97 Identities=16% Similarity=0.100 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 000176 1784 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH-KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK---RTDLWSIY 1858 (1924)
Q Consensus 1784 ~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~-~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk---~~dlw~~y 1858 (1924)
.+++..+..+-.. +.++|..+|++++..-... ....+++.+|..+...|++++|..+|+.++..+|+ +..++..|
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 3566666666666 8888888888888754333 22468888898899999999999999999988888 66778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 000176 1859 LDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1859 ~~le~k~gd~~~ar~lferal~ 1880 (1924)
+..+...|+.+.|...+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888999998888888776
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0036 Score=75.27 Aligned_cols=146 Identities=12% Similarity=0.140 Sum_probs=107.3
Q ss_pred HHHHHhcCC---CHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHhc-CHHHHHHHHHHHHHhC
Q 000176 1739 FQRALQYCD---PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSC--KVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1812 (1924)
Q Consensus 1739 ferAl~~~~---~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~--~vw~~~a~~l~~~-~~~~A~~l~~ral~~~ 1812 (1924)
++.|++... ..+.......+|.+.++++.|...++.+-+...++. .+...|..+.... ++.+|..+|+.....+
T Consensus 118 ~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~ 197 (290)
T PF04733_consen 118 YEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF 197 (290)
T ss_dssp HHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS
T ss_pred HHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc
Confidence 344554443 347777788899999999999999999876543332 2233444444444 8999999999988777
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCchhH
Q 000176 1813 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV-DLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1813 p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~-~~ar~lferal~~~~~pk~~ 1888 (1924)
+.. +.++...|..++.+|++++|..+++.++...|++.+.+...+-+....|+. +.+..++..+-. ..|...
T Consensus 198 ~~t--~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~--~~p~h~ 270 (290)
T PF04733_consen 198 GST--PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ--SNPNHP 270 (290)
T ss_dssp --S--HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH--HTTTSH
T ss_pred CCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH--hCCCCh
Confidence 654 688899999999999999999999999999999999999999998888887 667778877665 444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0028 Score=66.18 Aligned_cols=111 Identities=14% Similarity=0.191 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHhCC-CCChHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHH
Q 000176 1799 EGVQAVVQRALLSLP-RHKHIKFISQTAILEFKN----GVADRGRSMFEGILSEYPKR---------TDLWSIYLDQEIR 1864 (1924)
Q Consensus 1799 ~~A~~l~~ral~~~p-~~~~~~~~~~~A~le~~~----g~~e~Ar~lfe~aL~~~Pk~---------~dlw~~y~~le~k 1864 (1924)
++.++.|+..|.... .++++..|..|..+..+. +.-..-+.+++++++.+.++ ..+|..|+++..
T Consensus 2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~- 80 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS- 80 (126)
T ss_dssp HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS-
T ss_pred HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc-
Confidence 345666777777666 555677777777766532 34556667777777765432 347888887543
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1865 LGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916 (1924)
Q Consensus 1865 ~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAl 1916 (1924)
.++.+|..+.+.++..+-+ .||..|+.+....|+.+.|..||++|+
T Consensus 81 -----~~~~if~~l~~~~IG~~~A-~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 -----DPREIFKFLYSKGIGTKLA-LFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp -----HHHHHHHHHHHHTTSTTBH-HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHcCccHHHH-HHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 7888898888877777777 799999999999999999999998875
|
This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B. |
| >cd04462 S1_RNAPII_Rpb7 S1_RNAPII_Rpb7: Eukaryotic RNA polymerase II (RNAPII) Rpb7 subunit C-terminal S1 domain | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0019 Score=62.80 Aligned_cols=64 Identities=16% Similarity=0.258 Sum_probs=52.2
Q ss_pred CCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCc-----------ccccCCCcEEEEEEEEEecCCCe
Q 000176 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI-----------ETIYRAGEKVKVKILKVDKEKRR 1522 (1924)
Q Consensus 1457 ~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~-----------~~~~~~Gd~Vk~~Vl~id~e~~r 1522 (1924)
+|+++.|.|+++.++|+||.+++ +++|+|.+.+.++..-++ ...+..|+.|++||+.+..+.+.
T Consensus 1 kgEVi~g~V~~v~~~G~~v~~Gp--l~~f~~~~~ip~~~~~~~~~~~~~~~~~~~~~i~~g~~VR~rV~~v~~~~~~ 75 (88)
T cd04462 1 KGEVVDAIVTSVNKTGFFAEVGP--LSIFISRHLIPSDMEFDPNASPPCFTSNEDIVIKKDTEVRLKIIGTRVDATD 75 (88)
T ss_pred CCcEEEEEEEEEeccEEEEEEcC--ceEEEEeeecCccceECCcCCCCeEeCCCcEEECCCCEEEEEEEEEEEccCc
Confidence 58999999999999999999974 899999999976533221 24588999999999999876554
|
RNAPII is composed of 12 subunits (Rpb1-12). Rpb4 and Rpb7 form a heterodimer that associate with the RNAPII core. Rpb7 is a homolog of the Rpc25 of RNA polymerase III, RpoE of the archaeal RNA polymerase, and Rpa43 of eukaryotic RNA polymerase I. Rpb7 has two domains, an N-terminal ribonucleoprotein (RNP) domain and a C-terminal S1 domain, both of which bind single-stranded RNA. It is possible that the S1 domain interacts with the nascent RNA transcript, assisted by the RNP domain. In yeast, Rpb4/Rpb7 is necessary for promoter-directed transcription initiation. They also play a role in regulating transcription-coupled repair in the Rad26-dependent pathway, in efficient mRNA export, and in transcription termination. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.034 Score=64.78 Aligned_cols=206 Identities=17% Similarity=0.139 Sum_probs=116.9
Q ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHH-HHHHHHHcCCCCHH
Q 000176 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVA-YFNLENEYGNPPEE 1733 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWia-yl~le~~~g~~~~e 1733 (1924)
++..+|...|+.+...+...+.+|..++-+..-+|.+.+|..+.++|.++ | +.+. ++++..+++ +++
T Consensus 71 gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~-p---------L~~RLlfhlahkln--dEk 138 (557)
T KOG3785|consen 71 GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKT-P---------LCIRLLFHLAHKLN--DEK 138 (557)
T ss_pred ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCC-h---------HHHHHHHHHHHHhC--cHH
Confidence 44667777777776666667899999999999999999999999999854 3 2222 334444555 223
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC
Q 000176 1734 AVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1812 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~ 1812 (1924)
+ .-.|...++-. .+-.+.++.+...---|++|.++|.+.+...+....+-..++..+.+. -++-+.+++.--|..+
T Consensus 139 ~-~~~fh~~LqD~--~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~ 215 (557)
T KOG3785|consen 139 R-ILTFHSSLQDT--LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF 215 (557)
T ss_pred H-HHHHHHHHhhh--HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC
Confidence 2 23333333321 233344455444444566666666666665555444445555555555 5666666666666666
Q ss_pred CCCChHHHHHHHHHHHHH--cCC----------------HHHHHHHH----------HHHHHhCCCC----HHHHHHHHH
Q 000176 1813 PRHKHIKFISQTAILEFK--NGV----------------ADRGRSMF----------EGILSEYPKR----TDLWSIYLD 1860 (1924)
Q Consensus 1813 p~~~~~~~~~~~A~le~~--~g~----------------~e~Ar~lf----------e~aL~~~Pk~----~dlw~~y~~ 1860 (1924)
|++. -+....|...|+ .|+ ++.+..+. |.+|+..|.- +.+...++-
T Consensus 216 pdSt--iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~i 293 (557)
T KOG3785|consen 216 PDST--IAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLII 293 (557)
T ss_pred CCcH--HHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhhee
Confidence 6653 122222222211 111 11222221 2233444431 234556666
Q ss_pred HHHHcCCHHHHHHHHHH
Q 000176 1861 QEIRLGDVDLIRGLFER 1877 (1924)
Q Consensus 1861 le~k~gd~~~ar~lfer 1877 (1924)
.+.+++|...|..+...
T Consensus 294 YyL~q~dVqeA~~L~Kd 310 (557)
T KOG3785|consen 294 YYLNQNDVQEAISLCKD 310 (557)
T ss_pred eecccccHHHHHHHHhh
Confidence 77789999999887764
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.016 Score=62.76 Aligned_cols=99 Identities=16% Similarity=0.088 Sum_probs=81.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHH
Q 000176 1683 AFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYER 1761 (1924)
Q Consensus 1683 ~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~ 1761 (1924)
.-++..|++++|..-|.+||..+|.....++..++.........++.+ +.|.+..-+|++.+|.. ......+.+|++
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~--e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKW--ESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhH--HHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 345677999999999999999999877777777777666666777755 88999999999999976 777788999999
Q ss_pred hCChHHHHHHHHHHHHhcCCCH
Q 000176 1762 TEQNKLADELLYKMIKKFKHSC 1783 (1924)
Q Consensus 1762 ~gk~e~A~~~fe~~lk~~~~~~ 1783 (1924)
..++++|.+-|.+++...|...
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchH
Confidence 9999999999999998766433
|
|
| >PRK12327 nusA transcription elongation factor NusA; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0014 Score=79.90 Aligned_cols=122 Identities=16% Similarity=0.227 Sum_probs=84.5
Q ss_pred ccccCCCCeEeeEEEeecCCCeEEEEecccccchhcc--CCCCcCcc--CCCCEEEEEEEEEecCeEEEEECCCeEEEec
Q 000176 715 KSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHI--HPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 790 (1924)
Q Consensus 715 ~~~~~~G~~i~~vl~id~~~~~i~ls~K~sl~~~~~~--~~~~~~~~--~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~ 790 (1924)
....++|+.+.--+....-++....++|+.+...-.. --.-|+++ +.|++++|+|.++.+.|+||.+ |++.||+|
T Consensus 84 ~~~~~vGD~i~~~I~~~~fgR~aaq~akqvI~Qkire~ere~v~~ef~~k~GeiV~G~V~~~~~~~~~Vdl-g~vEa~LP 162 (362)
T PRK12327 84 NPAYELGDVIEIEVTPKDFGRIAAQTAKQVIMQRLREAEREIIYNEFSEREGDIVTGVVQRRDNRFVYVNL-GKIEAVLP 162 (362)
T ss_pred CccccCCCEEEEecCcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEEEeCCcEEEEe-CCeEEEec
Confidence 3456778887632222222333444555555443221 01124556 7899999999999999999999 66999999
Q ss_pred CCccCcccccCcccCCCCCCEEEEEEEEeeCCCCe--EEEeecccccCCCchhhHHHHHHHH
Q 000176 791 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR--ITLSLKQSCCSSTDASFMQEHFLLE 850 (1924)
Q Consensus 791 ~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r--~~lSlk~~~~~~~d~~~~~~~~~~~ 850 (1924)
++++. |.+.|++||.++|.|.+++.+.++ +.||. ++|.|+..+|..+
T Consensus 163 ~~E~i------p~e~~~~Gd~Ika~V~~V~~~~kgp~IivSR-------t~p~~v~~Lfe~E 211 (362)
T PRK12327 163 PAEQI------PGETYKHGDRIKVYVVKVEKTTKGPQIFVSR-------THPGLVKRLFELE 211 (362)
T ss_pred HHHcC------CCCCCCCCCEEEEEEEEEecCCCCCeEEEEe-------CCHHHHHHHHHHh
Confidence 88774 367899999999999999977654 66664 4677888877743
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0089 Score=72.08 Aligned_cols=141 Identities=21% Similarity=0.214 Sum_probs=107.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000176 1682 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER 1761 (1924)
Q Consensus 1682 ~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~ 1761 (1924)
+.++.+.+++..|...|+||+..++++. .+. .++.. .++.+ ....|+.++..|.+
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~----------------~~~---~ee~~-~~~~~-----k~~~~lNlA~c~lK 269 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRR----------------SFD---EEEQK-KAEAL-----KLACHLNLAACYLK 269 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccc----------------cCC---HHHHH-HHHHH-----HHHHhhHHHHHHHh
Confidence 3467788999999999999997665422 111 11111 11111 12467888999999
Q ss_pred hCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC-HHHHHH
Q 000176 1762 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV-ADRGRS 1839 (1924)
Q Consensus 1762 ~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~-~e~Ar~ 1839 (1924)
.+.|..|.+..++++..-+.+.+..++.++.++.. +++.|+..|++|++..|.++ .+-..++.+-.+... .++.+.
T Consensus 270 l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk--a~~~el~~l~~k~~~~~~kekk 347 (397)
T KOG0543|consen 270 LKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNK--AARAELIKLKQKIREYEEKEKK 347 (397)
T ss_pred hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 99999999999999999985 566666666554443 456688
Q ss_pred HHHHHHHhCC
Q 000176 1840 MFEGILSEYP 1849 (1924)
Q Consensus 1840 lfe~aL~~~P 1849 (1924)
+|.+++...+
T Consensus 348 ~y~~mF~k~~ 357 (397)
T KOG0543|consen 348 MYANMFAKLA 357 (397)
T ss_pred HHHHHhhccc
Confidence 8888887654
|
|
| >PRK05054 exoribonuclease II; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0015 Score=86.78 Aligned_cols=72 Identities=24% Similarity=0.328 Sum_probs=60.4
Q ss_pred CCC--cEEEEEEEEeecceEEEEEecCceeEEeeccccCcc---cc--cC-----c--ccccCCCcEEEEEEEEEecCCC
Q 000176 1456 HVG--DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED---HV--DN-----I--ETIYRAGEKVKVKILKVDKEKR 1521 (1924)
Q Consensus 1456 ~~G--~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~---~~--~~-----~--~~~~~~Gd~Vk~~Vl~id~e~~ 1521 (1924)
++| +.+.|.|+.|++||+||+|++.++.||+|++.+.+. +. .+ + ...|+.||.|+++|.++|.+++
T Consensus 558 ~~G~~~~f~g~I~~v~~~G~fV~l~~~~veglV~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~lGd~V~V~v~~vd~~~~ 637 (644)
T PRK05054 558 KAGTDTRFAAEIIDISRGGMRVRLLENGAVAFIPASFLHAVRDELVCNQENGTVQIKGETVYKLGDVIDVTLAEVRMETR 637 (644)
T ss_pred ccCCCeEEEEEEEeeecCcEEEEEeCCceEEEEEccccCCCccceEEccccceEEEeCCEEEcCCCEEEEEEEEEccccC
Confidence 465 599999999999999999998899999999999763 11 11 1 2479999999999999999999
Q ss_pred eeEEec
Q 000176 1522 RISLGM 1527 (1924)
Q Consensus 1522 ri~lsl 1527 (1924)
+|.+.+
T Consensus 638 ~i~~~~ 643 (644)
T PRK05054 638 SIIARP 643 (644)
T ss_pred eEEEEE
Confidence 998764
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0029 Score=59.20 Aligned_cols=55 Identities=25% Similarity=0.212 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000176 1797 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1853 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d 1853 (1924)
++++|.+.+++++...|.+ +.+|..+|.+++..|+++.|+..|+++++..|++.+
T Consensus 10 ~~~~A~~~~~~~l~~~p~~--~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 10 DYEEALEVLERALELDPDD--PELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred CHHHHHHHHHHHHHhCccc--chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 4444444444444444443 244444444444444444444444444444444433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0014 Score=54.96 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000176 1819 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1860 (1924)
Q Consensus 1819 ~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~ 1860 (1924)
.+|..+|..+...|++++|+.+|+++++.+|++.++|..+++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 578999999999999999999999999999999999998875
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.013 Score=67.85 Aligned_cols=98 Identities=14% Similarity=0.196 Sum_probs=83.5
Q ss_pred HHHhCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCC
Q 000176 1759 YERTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGV 1833 (1924)
Q Consensus 1759 ~~~~gk~e~A~~~fe~~lk~~~~~---~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~-~~~~~~~~A~le~~~g~ 1833 (1924)
+..+|+|..|.+.|..-+++||.+ +..++=+++.++.+ +++.|..+|.++.+.+|++. .++.++++|.....+|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 346788999999999999999753 56667778888888 99999999999999999874 35899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHH
Q 000176 1834 ADRGRSMFEGILSEYPKRTDLWS 1856 (1924)
Q Consensus 1834 ~e~Ar~lfe~aL~~~Pk~~dlw~ 1856 (1924)
-+.|+..|+.+++.||+....-.
T Consensus 231 ~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 231 TDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHH
Confidence 99999999999999998765433
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.036 Score=59.56 Aligned_cols=138 Identities=16% Similarity=0.069 Sum_probs=103.7
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcC--CCHHHHHHHHHH
Q 000176 1717 WVAYFNLENEYGNPPEEAVVKVFQRALQYC--DPKKVHLALLGLYERTEQNKLADELLYKMIKKFK--HSCKVWLRRVQR 1792 (1924)
Q Consensus 1717 Wiayl~le~~~g~~~~e~a~~vferAl~~~--~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~--~~~~vw~~~a~~ 1792 (1924)
-.++.+-....|. ..+|+..|++|+.=. ++..+.+.+++.....+++..|..+++++....+ .+++-.+.|+..
T Consensus 92 r~rLa~al~elGr--~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~ 169 (251)
T COG4700 92 RYRLANALAELGR--YHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFART 169 (251)
T ss_pred HHHHHHHHHHhhh--hhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHH
Confidence 3455666667784 488888888888643 4457888888888888888888888888887664 567778888888
Q ss_pred HHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHH----HHHHHHHHHHHhCCCCH---HHHHHHH
Q 000176 1793 LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD----RGRSMFEGILSEYPKRT---DLWSIYL 1859 (1924)
Q Consensus 1793 l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e----~Ar~lfe~aL~~~Pk~~---dlw~~y~ 1859 (1924)
+..+ ++..|+..|+.++...|.- .....|+.|+.++|+.. +.+.+++++.++.|... .-|...+
T Consensus 170 laa~g~~a~Aesafe~a~~~ypg~---~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H~rkh~reW~~~A 241 (251)
T COG4700 170 LAAQGKYADAESAFEVAISYYPGP---QARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRPHYRKHHREWIKTA 241 (251)
T ss_pred HHhcCCchhHHHHHHHHHHhCCCH---HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 8888 8899999999999888775 68888899998888544 45566777777666432 2466655
|
|
| >PHA02858 EIF2a-like PKR inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.002 Score=59.67 Aligned_cols=69 Identities=19% Similarity=0.293 Sum_probs=62.7
Q ss_pred CCCCEEEEEEEEEeeceEEEEe-CCCcEEEEE-CccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEe
Q 000176 1366 SPNMIVQGYVKNVTSKGCFIML-SRKLDAKVL-LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~fV~l-~~~v~g~v~-~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSl 1436 (1924)
++|+.+. .|+.+.+.|++|.| +-+++|++. .++++..++...++.+ +|....++|+.+|+++|-|.||.
T Consensus 15 ~v~dvv~-~Vv~i~d~~~YV~LleY~iegmIl~~selsr~rirsi~kll-VGk~e~v~ViRVDk~KGYIDLs~ 85 (86)
T PHA02858 15 NINEVTK-GIVFVKDNIFYVKLIDYGLEALIVNYVNVNADRAEKLKKKL-VGKTINVQVIRTDKLKGYIDVRH 85 (86)
T ss_pred CCCeEEE-EEEEEeccEEEEEEecCccceEEecHHHHhHHHHHhhhhhh-cCCeeEEEEEEECCCCCEEEeEc
Confidence 5889998 88999999999987 446999998 9999999999888888 99999999999999999999984
|
|
| >PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.016 Score=60.59 Aligned_cols=106 Identities=18% Similarity=0.221 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcC----CCHHHHHHHHHHHHHh----CChHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHhcC
Q 000176 1735 VVKVFQRALQYC----DPKKVHLALLGLYERT----EQNKLADELLYKMIKKFKHS---------CKVWLRRVQRLLKQQ 1797 (1924)
Q Consensus 1735 a~~vferAl~~~----~~~~i~~~l~~i~~~~----gk~e~A~~~fe~~lk~~~~~---------~~vw~~~a~~l~~~~ 1797 (1924)
.++.|+..+... ++...|..++....++ +.......++++++..|.+. .++|+.|+. .
T Consensus 4 ~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~-----~ 78 (126)
T PF08311_consen 4 QRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD-----L 78 (126)
T ss_dssp HHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT-----T
T ss_pred HHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH-----H
Confidence 345555555443 2346666666654433 34455556666666655322 334444444 2
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1798 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGIL 1845 (1924)
Q Consensus 1798 ~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL 1845 (1924)
.+.++++|+.+....=...+..+|..||.++...|++++|.++|+.+|
T Consensus 79 ~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 79 SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 235666666666554445555666666666666666666666666543
|
This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0028 Score=73.17 Aligned_cols=107 Identities=16% Similarity=0.059 Sum_probs=96.7
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC
Q 000176 1754 ALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1832 (1924)
Q Consensus 1754 ~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g 1832 (1924)
.-++-|.+.|+|++|.+.|.+.+..+|.++-.+.+.+..|++. ++..|..-+..|+..+.. .+++|++-++.-+..|
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~--Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL--YVKAYSRRMQARESLG 179 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH--HHHHHHHHHHHHHHHh
Confidence 3456788999999999999999999999999999999999999 999999999999988643 3799999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000176 1833 VADRGRSMFEGILSEYPKRTDLWSIYLDQE 1862 (1924)
Q Consensus 1833 ~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le 1862 (1924)
+.++|..-+|++|+..|++..+--.|+++-
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~ 209 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARIN 209 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhc
Confidence 999999999999999999988888877764
|
|
| >COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0068 Score=65.37 Aligned_cols=75 Identities=24% Similarity=0.389 Sum_probs=63.4
Q ss_pred ccccCCCcEEEEEEEEeecceEEEEEec---------CceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCe
Q 000176 1452 LSNLHVGDIVIGQIKRVESYGLFITIEN---------TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1522 (1924)
Q Consensus 1452 ~~~l~~G~~v~G~V~~v~~~GvFV~l~~---------~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~r 1522 (1924)
..-++.|++|-|.|+++....+.|++-. +-..|-+|+|++++.+++++++.|++||.|+|+|++.- -.
T Consensus 59 ~~~~K~GdiV~grV~~v~~~~a~V~i~~ve~~~r~~~~~~~~~ihvs~~~~~~~~~~~d~f~~GDivrA~Vis~~---~~ 135 (188)
T COG1096 59 PPLPKGGDIVYGRVTDVREQRALVRIVGVEGKERELATSGAADIHVSQVRDGYVEKLSDAFRIGDIVRARVISTG---DP 135 (188)
T ss_pred CCCCCCCCEEEEEEeeccceEEEEEEEEEecccccCCCCceeeEEEEecccccccccccccccccEEEEEEEecC---CC
Confidence 4467899999999999999999888741 12566789999999999999999999999999999984 45
Q ss_pred eEEeccc
Q 000176 1523 ISLGMKS 1529 (1924)
Q Consensus 1523 i~lslK~ 1529 (1924)
+.||++.
T Consensus 136 ~~Lst~~ 142 (188)
T COG1096 136 IQLSTKG 142 (188)
T ss_pred eEEEecC
Confidence 7777765
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0041 Score=58.19 Aligned_cols=62 Identities=19% Similarity=0.260 Sum_probs=56.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1825 AILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1825 A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
++.+++.++++.|...+++++..+|.+..+|..++.++.+.|++..|+..|++++. ..|+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~ 63 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDP 63 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcH
Confidence 46788899999999999999999999999999999999999999999999999998 555444
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.16 Score=58.47 Aligned_cols=190 Identities=14% Similarity=0.086 Sum_probs=108.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH--HH
Q 000176 1674 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK--KV 1751 (1924)
Q Consensus 1674 s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~--~i 1751 (1924)
....|.+-+.-.++.|++++|...|+......|+++-.++..+-++|.+. ..+ +.+.|...++|-++..|.. --
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Y--k~~--~y~~A~~~~drFi~lyP~~~n~d 108 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYY--KNG--EYDLALAYIDRFIRLYPTHPNAD 108 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH--hcc--cHHHHHHHHHHHHHhCCCCCChh
Confidence 45566666666777777777777777777777776655554444444443 334 2366777777777766652 22
Q ss_pred HHHHHHHHHHh----------CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCChHHHH
Q 000176 1752 HLALLGLYERT----------EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFI 1821 (1924)
Q Consensus 1752 ~~~l~~i~~~~----------gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~~~~~A~~l~~ral~~~p~~~~~~~~ 1821 (1924)
|..|+..+... .-..+|..-|+..+.+||.+.= ...|..-+..+-..+ ..-=
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y-------------a~dA~~~i~~~~d~L-----A~~E 170 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY-------------APDAKARIVKLNDAL-----AGHE 170 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcc-------------hhhHHHHHHHHHHHH-----HHHH
Confidence 33333222111 1124566677777777775532 122222222221111 1223
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 000176 1822 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDL---WSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1887 (1924)
Q Consensus 1822 ~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dl---w~~y~~le~k~gd~~~ar~lferal~~~~~pk~ 1887 (1924)
+..|.+|.+.|.+..|..-|+.++..+|+.... ...+...+.+.|-.+.|.. ..++|.. .+|+.
T Consensus 171 m~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~-~~~vl~~-N~p~s 237 (254)
T COG4105 171 MAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKK-TAKVLGA-NYPDS 237 (254)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHH-HHHHHHh-cCCCC
Confidence 556888889999999999999999998876543 4444455566776666554 3444442 44443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.13 Score=57.83 Aligned_cols=140 Identities=14% Similarity=0.111 Sum_probs=93.0
Q ss_pred HHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCC----ChHHHHHHHHHHHHHc
Q 000176 1757 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH----KHIKFISQTAILEFKN 1831 (1924)
Q Consensus 1757 ~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~----~~~~~~~~~A~le~~~ 1831 (1924)
.+|..+|..+-|...++++-+ .++. ++++|.++|+|++..+... ...+++.+.+.++.+.
T Consensus 99 ~lY~E~GspdtAAmaleKAak---------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 99 ELYVECGSPDTAAMALEKAAK---------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred HHHHHhCCcchHHHHHHHHHH---------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence 445555555555555555543 5556 8999999999999877543 2246778888888888
Q ss_pred CCHHHHHHHHHHHH------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHHHHHcC
Q 000176 1832 GVADRGRSMFEGIL------SEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS--LPPKKMKFLFKKYLEYEKSVG 1903 (1924)
Q Consensus 1832 g~~e~Ar~lfe~aL------~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~--~~pk~~k~lw~~yl~~E~~~G 1903 (1924)
..+++|-.-|.+-. ..+|.....+...+-++.-..|+..|..+|....+.. +.+.+. ......+.+.. .|
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~-r~lenLL~ayd-~g 241 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDS-RSLENLLTAYD-EG 241 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHH-HHHHHHHHHhc-cC
Confidence 88888877776652 3456665566666666667779999999998866521 233333 23455555443 58
Q ss_pred CHHHHHHHHH
Q 000176 1904 EEERIEYVKQ 1913 (1924)
Q Consensus 1904 ~~~~~~~v~~ 1913 (1924)
|.+.+..|..
T Consensus 242 D~E~~~kvl~ 251 (308)
T KOG1585|consen 242 DIEEIKKVLS 251 (308)
T ss_pred CHHHHHHHHc
Confidence 8888877763
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.046 Score=58.82 Aligned_cols=97 Identities=10% Similarity=-0.083 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 000176 1752 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1830 (1924)
Q Consensus 1752 ~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~ 1830 (1924)
.+.++--+.+.|++++|..+|.-++...+.+++.|+.++..+... ++++|...|..|....+.+. ......|+.++.
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp--~p~f~agqC~l~ 117 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY--RPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC--CccchHHHHHHH
Confidence 344444566899999999999999988888999999999988888 99999999999998876653 567788999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCC
Q 000176 1831 NGVADRGRSMFEGILSEYPKR 1851 (1924)
Q Consensus 1831 ~g~~e~Ar~lfe~aL~~~Pk~ 1851 (1924)
.|+.+.|+..|+.++. .|..
T Consensus 118 l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 118 MRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred hCCHHHHHHHHHHHHh-Ccch
Confidence 9999999999999987 3443
|
|
| >PF10447 EXOSC1: Exosome component EXOSC1/CSL4; InterPro: IPR019495 The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions [] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0032 Score=59.75 Aligned_cols=61 Identities=23% Similarity=0.463 Sum_probs=43.6
Q ss_pred CCCcEEEEEEEEeecceEEEEEecC-----------------ceeEEeeccccCcccccC--cccccCCCcEEEEEEEEE
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIENT-----------------NLVGLCHVSELSEDHVDN--IETIYRAGEKVKVKILKV 1516 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~~-----------------~v~gl~h~sels~~~~~~--~~~~~~~Gd~Vk~~Vl~i 1516 (1924)
++|++|.|+|+++++.-++++|--- ...|++|++++.....+. +.+.|++||.|+|+|+++
T Consensus 3 ~vGdiV~~rVtrv~~~~a~v~Il~v~~~~~~~~~~~~~~l~~~f~GiIR~~DVR~te~Dkv~~~~~FrpGDIVrA~ViSl 82 (82)
T PF10447_consen 3 KVGDIVIARVTRVNPRQAKVEILCVEGKGNDSINAGDRPLKEPFQGIIRKQDVRATEKDKVKMYDCFRPGDIVRARVISL 82 (82)
T ss_dssp -TT-EEEEEEEEE-SSEEEEEEEES----------SSS----SS-S-EEEEGGGT-SS----GGGT--SSSEEEEEEEEE
T ss_pred CCCCEEEEEEEEEeccEEEEEEEEEEeccccccccCCcccccccEEEEEeeeecccccchhhHHhccCCCCEEEEEEeeC
Confidence 5899999999999999888887422 568899999997765543 689999999999999974
|
The proteins in this entry are components of the exosome 3'->5' exoribonuclease complex. They do not have exonuclease activity, but are required for the 3'-processing of the 7S pre-RNA to the mature 5.8S rRNA and for mRNA decay [, ].; PDB: 2NN6_I. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.02 Score=60.19 Aligned_cols=100 Identities=15% Similarity=0.119 Sum_probs=67.2
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChH-HHHHHHHHH
Q 000176 1753 LALLGLYERTEQNKLADELLYKMIKKFKH---SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI-KFISQTAIL 1827 (1924)
Q Consensus 1753 ~~l~~i~~~~gk~e~A~~~fe~~lk~~~~---~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~-~~~~~~A~l 1827 (1924)
+.-+.-..+.|+|++|.+.|+.+...||. ...+-+.++..+++. ++++|...++|-++.+|.|..+ -+++..|..
T Consensus 14 y~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 14 YQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 33334456778888888888888888763 345555666666777 8888888888888888887543 345555554
Q ss_pred HHHcCC---------------HHHHHHHHHHHHHhCCCCH
Q 000176 1828 EFKNGV---------------ADRGRSMFEGILSEYPKRT 1852 (1924)
Q Consensus 1828 e~~~g~---------------~e~Ar~lfe~aL~~~Pk~~ 1852 (1924)
++.... ...|...|+++++.+|++.
T Consensus 94 ~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 94 YYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 544433 5677777777777777754
|
|
| >cd04462 S1_RNAPII_Rpb7 S1_RNAPII_Rpb7: Eukaryotic RNA polymerase II (RNAPII) Rpb7 subunit C-terminal S1 domain | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.008 Score=58.46 Aligned_cols=63 Identities=13% Similarity=0.132 Sum_probs=51.0
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCC-----------CccCCCCcEEEEEEEEEeCCCC
Q 000176 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP-----------EKEFPIGKLVAGRVLSVEPLSK 1430 (1924)
Q Consensus 1367 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~-----------~~~f~~G~~V~~kVl~vd~e~~ 1430 (1924)
.|+++.|.|+++++.|+||.+| .+++|++...+.+++..+| ...+.+|+.|++||+.+..+.+
T Consensus 1 kgEVi~g~V~~v~~~G~~v~~G-pl~~f~~~~~ip~~~~~~~~~~~~~~~~~~~~~i~~g~~VR~rV~~v~~~~~ 74 (88)
T cd04462 1 KGEVVDAIVTSVNKTGFFAEVG-PLSIFISRHLIPSDMEFDPNASPPCFTSNEDIVIKKDTEVRLKIIGTRVDAT 74 (88)
T ss_pred CCcEEEEEEEEEeccEEEEEEc-CceEEEEeeecCccceECCcCCCCeEeCCCcEEECCCCEEEEEEEEEEEccC
Confidence 4899999999999999999998 5899999988877654433 2346789999999998875433
|
RNAPII is composed of 12 subunits (Rpb1-12). Rpb4 and Rpb7 form a heterodimer that associate with the RNAPII core. Rpb7 is a homolog of the Rpc25 of RNA polymerase III, RpoE of the archaeal RNA polymerase, and Rpa43 of eukaryotic RNA polymerase I. Rpb7 has two domains, an N-terminal ribonucleoprotein (RNP) domain and a C-terminal S1 domain, both of which bind single-stranded RNA. It is possible that the S1 domain interacts with the nascent RNA transcript, assisted by the RNP domain. In yeast, Rpb4/Rpb7 is necessary for promoter-directed transcription initiation. They also play a role in regulating transcription-coupled repair in the Rad26-dependent pathway, in efficient mRNA export, and in transcription termination. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.024 Score=60.96 Aligned_cols=94 Identities=5% Similarity=-0.058 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000176 1785 VWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1863 (1924)
Q Consensus 1785 vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~ 1863 (1924)
-.+.+|--++++ ++++|+.+|+-.+...|.+ .+.|..+|..+...++++.|...|..+....++++...+..++.++
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n--~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l 116 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN--PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHH
Confidence 445666667777 9999999999999888777 5899999999999999999999999999998888888888899999
Q ss_pred HcCCHHHHHHHHHHHHh
Q 000176 1864 RLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1864 k~gd~~~ar~lferal~ 1880 (1924)
..|+.+.|+..|+-++.
T Consensus 117 ~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 117 LMRKAAKARQCFELVNE 133 (165)
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 99999999999999998
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.2 Score=57.31 Aligned_cols=173 Identities=12% Similarity=0.090 Sum_probs=117.1
Q ss_pred HHHHHhCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 000176 1665 ERLVRSSPNSSFVWIKY-MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRAL 1743 (1924)
Q Consensus 1665 erll~~~P~s~~~W~~y-~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl 1743 (1924)
|......-++-..|.-. +.+++..++++.|..+..+.. .+. .--+++.+ ..+.. ..+-|++..+++.
T Consensus 97 E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~-~lE----~~Al~VqI-----~lk~~--r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 97 ELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE-NLE----AAALNVQI-----LLKMH--RFDLAEKELKKMQ 164 (299)
T ss_pred HHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc-hHH----HHHHHHHH-----HHHHH--HHHHHHHHHHHHH
Confidence 33333333344355444 445678899999998887732 221 11122222 12223 3477888888888
Q ss_pred hcCCCH---HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHH
Q 000176 1744 QYCDPK---KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIK 1819 (1924)
Q Consensus 1744 ~~~~~~---~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~ 1819 (1924)
+..++. .+-.+|+.+..-.+++.+|.=+|+.+..+++..+.+....+...+.+ ++++|..+++.||...++. +.
T Consensus 165 ~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d--pe 242 (299)
T KOG3081|consen 165 QIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD--PE 242 (299)
T ss_pred ccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC--HH
Confidence 776653 23444445555567799999999999999999999999999999999 9999999999999988776 57
Q ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCC
Q 000176 1820 FISQTAILEFKNGVA-DRGRSMFEGILSEYPKR 1851 (1924)
Q Consensus 1820 ~~~~~A~le~~~g~~-e~Ar~lfe~aL~~~Pk~ 1851 (1924)
++.+..-+-...|.. +--...+.++...+|+.
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 888777777777754 33444555666667764
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.064 Score=59.05 Aligned_cols=104 Identities=12% Similarity=-0.061 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Q 000176 1733 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1810 (1924)
Q Consensus 1733 e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~ 1810 (1924)
.-|+--|.+|+...|.. .++.-++-.+...|+++.|.+.|...+...|...-..++.+-.+.-. ++.-|.+-|..--+
T Consensus 82 ~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 82 ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 55788899999999885 78888888888999999999999999998877666666655555555 78888877777777
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHH
Q 000176 1811 SLPRHKHIKFISQTAILEFKNGVADRGRS 1839 (1924)
Q Consensus 1811 ~~p~~~~~~~~~~~A~le~~~g~~e~Ar~ 1839 (1924)
..|.+..-.+|..+- .+.-++..|++
T Consensus 162 ~D~~DPfR~LWLYl~---E~k~dP~~A~t 187 (297)
T COG4785 162 DDPNDPFRSLWLYLN---EQKLDPKQAKT 187 (297)
T ss_pred cCCCChHHHHHHHHH---HhhCCHHHHHH
Confidence 777775444554432 23335555554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.72 Score=55.22 Aligned_cols=217 Identities=13% Similarity=0.060 Sum_probs=155.6
Q ss_pred CCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CcchhhHHHHHH-HHHHHHHHcCCCCHH
Q 000176 1656 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTIN-IREENEKLNIWV-AYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1656 ~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~-~~ee~ekl~lWi-ayl~le~~~g~~~~e 1733 (1924)
..+.++..-+++-..-|.-...|...+....+.|++|.|.++.+......- .+...++...-+ .-=.++.... +..
T Consensus 169 areaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda--dp~ 246 (531)
T COG3898 169 AREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA--DPA 246 (531)
T ss_pred cHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC--ChH
Confidence 345555666677677788888888888888899999999888876654221 122333321111 1111222233 458
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCHHHHHHHHHHH--HH
Q 000176 1734 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRA--LL 1810 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~~~~~A~~l~~ra--l~ 1810 (1924)
.|++....|++..|+. ..-..-+..|.+.|+.-++-.+++++-+.+| .+.+|..|...- --+.+..-++|+ |.
T Consensus 247 ~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP-HP~ia~lY~~ar---~gdta~dRlkRa~~L~ 322 (531)
T COG3898 247 SARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP-HPDIALLYVRAR---SGDTALDRLKRAKKLE 322 (531)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC-ChHHHHHHHHhc---CCCcHHHHHHHHHHHH
Confidence 8999999999999886 6666677788899999999999999998874 789998886532 233344444443 44
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Q 000176 1811 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-GDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1811 ~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~-gd~~~ar~lferal~ 1880 (1924)
++.. ++.......++.-+.-|++-.||+--|.+.+..|. ..++..+++.+... ||..++|..+-+++.
T Consensus 323 slk~-nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 323 SLKP-NNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred hcCc-cchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 4432 23566777777777889999999999999988886 35777889988865 999999999999997
|
|
| >COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0064 Score=74.99 Aligned_cols=72 Identities=28% Similarity=0.553 Sum_probs=63.6
Q ss_pred cccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEeccc
Q 000176 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529 (1924)
Q Consensus 1451 ~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~ 1529 (1924)
.+.++..|..+.|+|.+|..||+||+|.. .+.||+|.++++.. ..|.+||.+-+.+..+.++++.|+|-...
T Consensus 116 ~~~Dve~g~~Y~g~v~~v~~~GvFv~Ln~-~v~GL~~~~d~~~~------~~~~vgdeiiV~v~~vr~~~geidf~~~~ 187 (715)
T COG1107 116 TMEDVEAGKYYKGIVSRVEKYGVFVELNS-HVRGLIHRRDLGGD------PDYAVGDEIIVQVSDVRPEKGEIDFEPVG 187 (715)
T ss_pred chhhcccceeeeccccchhhhcceeecCh-hhhccccccccCCC------CCCCCCCeEEEEeeccCCCCCccceeecC
Confidence 47899999999999999999999999975 89999999999873 24899999999999999998998875433
|
|
| >PTZ00162 DNA-directed RNA polymerase II subunit 7; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.011 Score=65.36 Aligned_cols=77 Identities=14% Similarity=0.238 Sum_probs=59.9
Q ss_pred CCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccc--c----------CcccccCCCcEEEEEEEEEecCC--C
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV--D----------NIETIYRAGEKVKVKILKVDKEK--R 1521 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~--~----------~~~~~~~~Gd~Vk~~Vl~id~e~--~ 1521 (1924)
-.|++++|.|+++.++|+||.+++ +++++|.+.|.+... . +-...+..|+.|++||+.+..+. -
T Consensus 80 f~gEVv~g~V~~v~~~G~~v~~Gp--~~ifI~~~~l~~~~~fd~~~~~~~~~~~~~~~~i~~g~~VR~rV~~v~~~~~~~ 157 (176)
T PTZ00162 80 FKDEVLDAIVTDVNKLGFFAQAGP--LKAFVSRSAIPPDFVYDSDSAYPCYISSDGQIQIKPNTEVRLRLQGVRYDASNL 157 (176)
T ss_pred CCCCEEEEEEEEEecceEEEEeeC--eEEEEcHHHCCCccEECCCCCcceEecCCCcEEECCCCEEEEEEEEEEecCCCc
Confidence 468999999999999999999975 779999999975421 1 11346889999999998876543 3
Q ss_pred eeEEeccccccCC
Q 000176 1522 RISLGMKSSYFKN 1534 (1924)
Q Consensus 1522 ri~lslK~s~~~~ 1534 (1924)
++..+||+.|...
T Consensus 158 ~~i~T~~~~~LG~ 170 (176)
T PTZ00162 158 FAIATINSDYLGP 170 (176)
T ss_pred EEEEEecCCCcCc
Confidence 4666888877744
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.046 Score=56.55 Aligned_cols=95 Identities=12% Similarity=0.082 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHH
Q 000176 1752 HLALLGLYERTEQNKLADELLYKMIKKFK---HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAI 1826 (1924)
Q Consensus 1752 ~~~l~~i~~~~gk~e~A~~~fe~~lk~~~---~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~-~~~~~~~~A~ 1826 (1924)
++.++..+...|+.++|..+|++++..-. .-..+|+.++..+... ++++|..+|+.++..+|... +..+...+|.
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 34444444444445555555554444211 1133444444444444 55555555555555444411 1133444444
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 000176 1827 LEFKNGVADRGRSMFEGILS 1846 (1924)
Q Consensus 1827 le~~~g~~e~Ar~lfe~aL~ 1846 (1924)
.++..|+.++|.+++-.++.
T Consensus 84 ~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 44555555555555544443
|
|
| >KOG2916 consensus Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0022 Score=71.43 Aligned_cols=74 Identities=30% Similarity=0.534 Sum_probs=69.4
Q ss_pred CCCcEEEEEEEEeecceEEEEEecC-ceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEeccc
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~~-~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~ 1529 (1924)
.++++|-+.|+.|.+.|+||.|-.- ++.|++-.||||..++..+.++.++|-.-.|.|+.+|.++|-|-||.+.
T Consensus 15 ev~e~VmvnV~sIaemGayv~LlEYnniEGmiLlsELSrRRIRSI~klirVGr~E~vvVlrVDkekGYIDLSkrr 89 (304)
T KOG2916|consen 15 EVEEIVMVNVRSIAEMGAYVKLLEYNNIEGMILLSELSRRRIRSIQKLIRVGRNEPVVVLRVDKEKGYIDLSKRR 89 (304)
T ss_pred CcccEEEEEeeEehhccceEeeeecCCcccchhhhHHHHHHHHHHHHHHhcCCcceEEEEEEcCCCCceechhcc
Confidence 5899999999999999999998533 8999999999999999999999999999999999999999999999766
|
|
| >COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.016 Score=71.62 Aligned_cols=155 Identities=19% Similarity=0.308 Sum_probs=105.6
Q ss_pred CCcCccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeeccc
Q 000176 754 SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833 (1924)
Q Consensus 754 ~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~ 833 (1924)
.+++|+..|..++|.|.++..||+||++...+.||+|.+.++.. ..|.+|+.+.+.|..+-++++.+.+-....
T Consensus 115 c~~~Dve~g~~Y~g~v~~v~~~GvFv~Ln~~v~GL~~~~d~~~~------~~~~vgdeiiV~v~~vr~~~geidf~~~~~ 188 (715)
T COG1107 115 CTMEDVEAGKYYKGIVSRVEKYGVFVELNSHVRGLIHRRDLGGD------PDYAVGDEIIVQVSDVRPEKGEIDFEPVGL 188 (715)
T ss_pred cchhhcccceeeeccccchhhhcceeecChhhhccccccccCCC------CCCCCCCeEEEEeeccCCCCCccceeecCC
Confidence 46889999999999999999999999999999999999999852 257999999999999999988887766554
Q ss_pred ccCCCchhhHHHHHHHHH--HHHHhhcccCCCccccccccccCccEE--EEEEEEEecc-ee-EEEeccCCceeEEEeee
Q 000176 834 CCSSTDASFMQEHFLLEE--KIAMLQSSKHNGSELKWVEGFIIGSVI--EGKVHESNDF-GV-VVSFEEHSDVYGFITHH 907 (1924)
Q Consensus 834 ~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vG~~v--~g~V~~i~~~-g~-~v~l~~~~~v~g~i~~~ 907 (1924)
.... ..++-.+.. .+.. +.+ .+|+.| .|+|+.++-+ |- +|++.+. +|++...
T Consensus 189 ~~Y~-----~~~~~ke~~r~~i~~-------------id~-~ig~tV~I~GeV~qikqT~GPTVFtltDe---tg~i~aA 246 (715)
T COG1107 189 DRYR-----EVQVEKELPRTLIDD-------------LDE-MIGKTVRIEGEVTQIKQTSGPTVFTLTDE---TGAIWAA 246 (715)
T ss_pred ccch-----hhhhhhhcccccHHH-------------HHh-hcCceEEEEEEEEEEEEcCCCEEEEEecC---CCceehh
Confidence 3211 000001000 0111 122 567655 5889998875 43 4777753 4555444
Q ss_pred ecC--Cc----ccccCCeEEEEEEEeeccccEEEEe
Q 000176 908 QLA--GA----TVESGSVIQAAILDVAKAERLVDLS 937 (1924)
Q Consensus 908 ~l~--~~----~~~~G~~v~~~Vl~vd~~~~~v~ls 937 (1924)
-+. +. .+++|+-|.. +=.++...+.+.+-
T Consensus 247 AFe~aGvRAyP~IevGdiV~V-iG~V~~r~g~lQiE 281 (715)
T COG1107 247 AFEEAGVRAYPEIEVGDIVEV-IGEVTRRDGRLQIE 281 (715)
T ss_pred hhccCCcccCCCCCCCceEEE-EEEEeecCCcEEEe
Confidence 332 21 5788888764 33456666666553
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.32 Score=56.02 Aligned_cols=156 Identities=13% Similarity=0.061 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHH-HHHHHHH
Q 000176 1752 HLALLGLYERTEQNKLADELLYKMIKKFK---HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIK-FISQTAI 1826 (1924)
Q Consensus 1752 ~~~l~~i~~~~gk~e~A~~~fe~~lk~~~---~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~-~~~~~A~ 1826 (1924)
|+.-+.-..+.|++++|...|+.+.+.+| -..++-+..+..+++. +++.|....+|-+..+|.+..++ +++.-+.
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 33333444566666666666666666654 2345555555555566 66666666666666666665432 1111111
Q ss_pred HHH-----HcCC---HHHHHHHHHHHHHhCCCCH---H--------------HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 000176 1827 LEF-----KNGV---ADRGRSMFEGILSEYPKRT---D--------------LWSIYLDQEIRLGDVDLIRGLFERAISL 1881 (1924)
Q Consensus 1827 le~-----~~g~---~e~Ar~lfe~aL~~~Pk~~---d--------------lw~~y~~le~k~gd~~~ar~lferal~~ 1881 (1924)
..+ ...| ..+|..-|+..++.+|++. | .=..-+.++.+.|.+..|..-|++++..
T Consensus 117 s~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 117 SYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 122 1122 2344455556666666631 0 1234577888999999999999999983
Q ss_pred CCCch--hHHHHHHHHHHHHHHcCCHHHHH
Q 000176 1882 SLPPK--KMKFLFKKYLEYEKSVGEEERIE 1909 (1924)
Q Consensus 1882 ~~~pk--~~k~lw~~yl~~E~~~G~~~~~~ 1909 (1924)
.+. ....-...|.......|-.+.+.
T Consensus 197 --y~~t~~~~eaL~~l~eaY~~lgl~~~a~ 224 (254)
T COG4105 197 --YPDTSAVREALARLEEAYYALGLTDEAK 224 (254)
T ss_pred --cccccchHHHHHHHHHHHHHhCChHHHH
Confidence 222 12222333334444466554444
|
|
| >PF13509 S1_2: S1 domain; PDB: 3GO5_A | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.014 Score=52.64 Aligned_cols=61 Identities=18% Similarity=0.151 Sum_probs=37.2
Q ss_pred CCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCCCCCCCCCCCCCCCEEEEEEEEEcCCCCEEEEEEe
Q 000176 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655 (1924)
Q Consensus 585 ~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~~ri~lS~k 655 (1924)
+|++....|+.+.++|+|++..++-.-|||.+++. ..+++|+.|.|.|.. |. ++|+.+|++
T Consensus 1 iG~~~~L~V~~~~~~g~fL~~~~~~~vlLp~~e~~--------~~~~~Gd~v~VFvY~-D~-~~rl~AT~k 61 (61)
T PF13509_consen 1 IGQINTLKVVDKNEFGYFLDDGEGKEVLLPKSEVP--------EPLKVGDEVEVFVYL-DK-EGRLVATTK 61 (61)
T ss_dssp --------EEEE-SSEEEEEETT-EEEEEEGGG--------------TTSEEEEEEEE--T-TS-EEEE--
T ss_pred CCCCcceEEEEEeCCEEEEECCCCCEEEechHHcC--------CCCCCCCEEEEEEEE-CC-CCCEEEecC
Confidence 37888899999999999999877799999999985 248899999999986 54 458888874
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.062 Score=56.60 Aligned_cols=74 Identities=12% Similarity=0.117 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 000176 1781 HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL 1854 (1924)
Q Consensus 1781 ~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~-~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dl 1854 (1924)
.++..|+.-|.-.++. ++++|.+.|+.....+|.... .++.+.++..+++.++++.|++.+++.++.+|.+..+
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 3566677778888888 999999999999999998643 3678888888999999999999999999999998664
|
|
| >TIGR02062 RNase_B exoribonuclease II | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0079 Score=79.90 Aligned_cols=71 Identities=18% Similarity=0.333 Sum_probs=58.7
Q ss_pred CCC--cEEEEEEEEeecceEEEEEecCceeEEeeccccCc--ccc---cC-----c--ccccCCCcEEEEEEEEEecCCC
Q 000176 1456 HVG--DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE--DHV---DN-----I--ETIYRAGEKVKVKILKVDKEKR 1521 (1924)
Q Consensus 1456 ~~G--~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~--~~~---~~-----~--~~~~~~Gd~Vk~~Vl~id~e~~ 1521 (1924)
++| +.+.|.|..+..||+||+|...++.|++|++.+.+ +.. .+ + ...|+.||.|+++|.++|.+++
T Consensus 554 ~~g~~~~f~g~I~~v~~~g~~v~l~~~~~~g~v~~~~l~~~~~~~~~~~~~~~~~l~g~~~~~lgd~v~V~v~~vd~~~~ 633 (639)
T TIGR02062 554 KAAKNTRFAAEIVDISRGGMRVRLLENGAIAFIPAAFLHANREELVCNQENGTVQIKGETVYKIGDVIDVVLTEVRMETR 633 (639)
T ss_pred ccCCCcEEEEEEEeeeCCcEEEEEecCceEEEEEhhhcCCCCcceEEcccccEEEEeccEEEecCCEEEEEEEEeccccC
Confidence 564 58999999999999999998779999999999976 211 11 1 1269999999999999999999
Q ss_pred eeEEe
Q 000176 1522 RISLG 1526 (1924)
Q Consensus 1522 ri~ls 1526 (1924)
+|.+.
T Consensus 634 ~i~~~ 638 (639)
T TIGR02062 634 SIIAR 638 (639)
T ss_pred cEeee
Confidence 98763
|
This family consists of exoribonuclease II, the product of the rnb gene, as found in a number of gamma proteobacteria. In Escherichia coli, it is one of eight different exoribonucleases. It is involved in mRNA degradation and tRNA precursor end processing. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.06 Score=54.64 Aligned_cols=91 Identities=19% Similarity=0.073 Sum_probs=57.2
Q ss_pred HHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCC--ChHHHHHHHHHHHHHcCCH
Q 000176 1758 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH--KHIKFISQTAILEFKNGVA 1834 (1924)
Q Consensus 1758 i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~--~~~~~~~~~A~le~~~g~~ 1834 (1924)
.+...|+.+.|.+.|.+++...|..+.+|.+.++.+.-+ +.++|.+-+.+|+...... .....+.+-|.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 344566666666666666666666666666666666666 6666666666666654332 2235566666666666766
Q ss_pred HHHHHHHHHHHHhC
Q 000176 1835 DRGRSMFEGILSEY 1848 (1924)
Q Consensus 1835 e~Ar~lfe~aL~~~ 1848 (1924)
+.||.-|+.+-+.-
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 77777777665443
|
|
| >COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.021 Score=64.36 Aligned_cols=73 Identities=23% Similarity=0.281 Sum_probs=65.2
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcc----cCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecc
Q 000176 1366 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY----VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~----~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~ 1439 (1924)
++||.|=|.|..+...+-.|+|+.-..|++|++++.+.. ..+.+.+|.+||.|.++|..+|+ .+.+.|++|..
T Consensus 63 ~~gD~VIG~I~~v~~~~W~VDI~sp~~A~L~ls~~~~r~~~~~~~~~r~~l~vGD~v~AkV~~vd~-~~~~~L~~k~~ 139 (239)
T COG1097 63 EVGDVVIGKIIEVGPSGWKVDIGSPYPALLSLSDFLRRKFENAEKDLRPFLNVGDLVYAKVVDVDR-DGEVELTLKDE 139 (239)
T ss_pred CCCCEEEEEEEEEcccceEEEcCCccceEeehhhhhcccccccccccccccccCCEEEEEEEEccC-CCceEEEeecC
Confidence 689999999999999999999998899999999996654 24678899999999999999994 88899999653
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.043 Score=63.55 Aligned_cols=88 Identities=17% Similarity=0.188 Sum_probs=79.6
Q ss_pred HHhc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC
Q 000176 1793 LLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR---TDLWSIYLDQEIRLGD 1867 (1924)
Q Consensus 1793 l~~~-~~~~A~~l~~ral~~~p~~~-~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~---~dlw~~y~~le~k~gd 1867 (1924)
++.. ++..|.+.|..-++.+|... ..++++-+++.+|.+|+++.|-.+|.++.+.+|+. .|...+++..+.+.|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 4444 89999999999999999874 34788889999999999999999999999999864 6889999999999999
Q ss_pred HHHHHHHHHHHHh
Q 000176 1868 VDLIRGLFERAIS 1880 (1924)
Q Consensus 1868 ~~~ar~lferal~ 1880 (1924)
.+.|+..|+.++.
T Consensus 231 ~d~A~atl~qv~k 243 (262)
T COG1729 231 TDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999998
|
|
| >COG0557 VacB Exoribonuclease R [Transcription] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0087 Score=80.95 Aligned_cols=76 Identities=33% Similarity=0.625 Sum_probs=65.6
Q ss_pred ccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccc-----------cCcccccCCCcEEEEEEEEEecCC
Q 000176 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------DNIETIYRAGEKVKVKILKVDKEK 1520 (1924)
Q Consensus 1452 ~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~-----------~~~~~~~~~Gd~Vk~~Vl~id~e~ 1520 (1924)
+..-++|+.+.|.|.+|..||+||.|.+.+++|++|++.+.+.+. +.....|+.||.|++++.+++...
T Consensus 617 ~m~~~vg~~f~g~V~~v~~~g~~V~l~~~~ieglV~~s~L~~d~y~~~~~~~~l~~~~~~~~~~lgd~v~v~v~~v~~~~ 696 (706)
T COG0557 617 YMKKRVGEEFDGVVTGVTSFGFFVELPELGLEGLVHISSLPDDYYHFDERGQALVGEKSGKVYRLGDEVKVKVTSVDLDE 696 (706)
T ss_pred HHHHhcCCEEEEEEEEEEeccEEEEecccccccceEcccCCCceeeeccccceeeccccccccccCCEEEEEEEEEcccc
Confidence 456689999999999999999999998878999999999996432 223457999999999999999999
Q ss_pred CeeEEec
Q 000176 1521 RRISLGM 1527 (1924)
Q Consensus 1521 ~ri~lsl 1527 (1924)
++|.+++
T Consensus 697 ~~i~~~~ 703 (706)
T COG0557 697 RKIDFEL 703 (706)
T ss_pred cceEEEe
Confidence 9998875
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.041 Score=59.82 Aligned_cols=76 Identities=17% Similarity=0.139 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000176 1785 VWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1862 (1924)
Q Consensus 1785 vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le 1862 (1924)
+|.+.+..++++ +.+.|..-..+||...|.+. .++.+.|.+|.+...++.|.+-|.+++..+|.+..+....+.+.
T Consensus 136 ly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~--kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~ 212 (271)
T KOG4234|consen 136 LYSNRAAALIKLRKWESAIEDCSKAIELNPTYE--KALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLP 212 (271)
T ss_pred HHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcC
Confidence 344556666666 77778888888888887763 67777788888888888888888888888887766555544443
|
|
| >KOG1856 consensus Transcription elongation factor SPT6 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0043 Score=81.78 Aligned_cols=78 Identities=21% Similarity=0.212 Sum_probs=69.5
Q ss_pred ccCCCCEEEEEEEEEecCe---EEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeecccc
Q 000176 758 HIHPNSVVHGYVCNIIETG---CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834 (1924)
Q Consensus 758 ~~~~G~~~~G~V~~i~~~G---~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~ 834 (1924)
.+.+|.++.+.|++++..- |-|++.+|++|++|.+.+|+..+.+|...+++||+|.|+|+++|.++=.+.||++.+.
T Consensus 982 t~~~g~iV~~~V~~vt~rr~~Cv~v~ld~G~~g~i~~~~~Sd~~v~~p~~~v~vgq~v~~kvi~id~e~f~v~Ls~r~sd 1061 (1299)
T KOG1856|consen 982 TFYEGAIVPVTVTKVTHRRGICVRVRLDCGVTGFILAKNLSDRDVRRPENRVKVGQTVYCKVIKIDKERFSVELSCRTSD 1061 (1299)
T ss_pred HhccCceEEEeeeEEEecccceeEEEecCCCceeeeccccChhhccCHHHhhccCceEEEEeeeeeHhhhhhhhhhhhHH
Confidence 3678999999999998765 5678999999999999999999999999999999999999999988777788888775
Q ss_pred c
Q 000176 835 C 835 (1924)
Q Consensus 835 ~ 835 (1924)
.
T Consensus 1062 l 1062 (1299)
T KOG1856|consen 1062 L 1062 (1299)
T ss_pred h
Confidence 4
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.013 Score=49.00 Aligned_cols=42 Identities=26% Similarity=0.289 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQ 1791 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~ 1791 (1924)
.+|..++..|.+.|++++|.++|+++++.+|+++.+|..+++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367788888888888888888888888888888888887764
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.038 Score=68.39 Aligned_cols=69 Identities=12% Similarity=0.063 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 000176 1780 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI-KFISQTAILEFKNGVADRGRSMFEGILSEY 1848 (1924)
Q Consensus 1780 ~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~-~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~ 1848 (1924)
|+.+..|++++..|+.. ++++|...|++||...|.+... .+|++.|..|..+|++++|...|++++..+
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 56788888888888888 8888888888888888876422 458888888888888888888888888763
|
|
| >cd05790 S1_Rrp40 S1_Rrp40: Rrp40 S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.031 Score=53.78 Aligned_cols=72 Identities=15% Similarity=0.111 Sum_probs=61.5
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecc
Q 000176 1366 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~ 1439 (1924)
++||.|=|.|+.++..+.+|+|+....|.+|..++... .+..+..|++|++|-|+|.++++. ...+||...+
T Consensus 5 ~~gD~VIG~V~~~~~~~~~VdI~s~~~a~L~~~~f~ga-tk~~rp~L~~GDlV~ArV~~~~~~-~~~eLtc~~~ 76 (86)
T cd05790 5 AKGDHVIGIVVAKAGDFFKVDIGGSEPASLSYLAFEGA-TKRNRPNLNVGDLVYARVVKANRD-MEPELSCVDS 76 (86)
T ss_pred CCCCEEEEEEEEEcCCeEEEEcCCCcceEechHHcccc-cccccccCCCCCEEEEEEEecCCC-CCeEEEEeCC
Confidence 58999999999999999999999889999999886543 344567799999999999999964 5688888764
|
S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure". |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.11 Score=64.42 Aligned_cols=62 Identities=8% Similarity=-0.071 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKV---WLRRVQRLLKQ-QQEGVQAVVQRALLS 1811 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~v---w~~~a~~l~~~-~~~~A~~l~~ral~~ 1811 (1924)
..|+.++..|...|+|++|...|++++...|++... |++.+..|..+ ++++|.+.|++|+..
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999988854 99999999999 999999999999986
|
|
| >PF10447 EXOSC1: Exosome component EXOSC1/CSL4; InterPro: IPR019495 The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions [] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.019 Score=54.57 Aligned_cols=60 Identities=18% Similarity=0.347 Sum_probs=41.4
Q ss_pred CCCCEEEEEEEEEecCcCeEEEEe------------------CCceEEEEecccccccccCC--CCCCCCCCCEEEEEEE
Q 000176 1258 HEGDIVGGRISKILSGVGGLVVQI------------------GPHLYGRVHFTELKNICVSD--PLSGYDEGQFVKCKVL 1317 (1924)
Q Consensus 1258 ~~G~~v~g~V~~v~~~~~g~~V~l------------------~~~~~G~v~~selsd~~~~~--p~~~~~~G~~v~~~Vl 1317 (1924)
++|++|.|+|+++++. .++++| +....|.++..|+....... +.+.|++|+.|+|+|+
T Consensus 3 ~vGdiV~~rVtrv~~~--~a~v~Il~v~~~~~~~~~~~~~~l~~~f~GiIR~~DVR~te~Dkv~~~~~FrpGDIVrA~Vi 80 (82)
T PF10447_consen 3 KVGDIVIARVTRVNPR--QAKVEILCVEGKGNDSINAGDRPLKEPFQGIIRKQDVRATEKDKVKMYDCFRPGDIVRARVI 80 (82)
T ss_dssp -TT-EEEEEEEEE-SS--EEEEEEEES----------SSS----SS-S-EEEEGGGT-SS----GGGT--SSSEEEEEEE
T ss_pred CCCCEEEEEEEEEecc--EEEEEEEEEEeccccccccCCcccccccEEEEEeeeecccccchhhHHhccCCCCEEEEEEe
Confidence 3899999999999998 888765 23578899999987755544 5788999999999999
Q ss_pred EE
Q 000176 1318 EI 1319 (1924)
Q Consensus 1318 ~v 1319 (1924)
+.
T Consensus 81 Sl 82 (82)
T PF10447_consen 81 SL 82 (82)
T ss_dssp EE
T ss_pred eC
Confidence 74
|
The proteins in this entry are components of the exosome 3'->5' exoribonuclease complex. They do not have exonuclease activity, but are required for the 3'-processing of the 7S pre-RNA to the mature 5.8S rRNA and for mRNA decay [, ].; PDB: 2NN6_I. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.91 E-value=1 Score=50.66 Aligned_cols=130 Identities=12% Similarity=0.039 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCCCh----
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKH------SCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPRHKH---- 1817 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~------~~~vw~~~a~~l~~~--~~~~A~~l~~ral~~~p~~~~---- 1817 (1924)
+.|....+.|.+. +.++|...+++++.+|.+ ..+-+...+.+|..- ++++|...|+.|-.-+.....
T Consensus 75 t~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssA 153 (288)
T KOG1586|consen 75 TTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSA 153 (288)
T ss_pred HHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhH
Confidence 4555555555433 677777777777766632 233445666666655 788888888888776654322
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHH------HHHHcCCHHHHHHHHHHHHh
Q 000176 1818 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL-WSIYLD------QEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1818 ~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dl-w~~y~~------le~k~gd~~~ar~lferal~ 1880 (1924)
-+.+++.|++-.+.+++.+|..+||++.+..-++.-+ |..-.- .++-..|.-.++..+++...
T Consensus 154 NKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 154 NKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 2567777887778888888888888887776554433 433221 22223566666666666665
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.087 Score=53.52 Aligned_cols=90 Identities=19% Similarity=0.104 Sum_probs=77.6
Q ss_pred HHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHH
Q 000176 1790 VQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT----DLWSIYLDQEIR 1864 (1924)
Q Consensus 1790 a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~----dlw~~y~~le~k 1864 (1924)
+-.+... +.+.|.+.|.++|..+|.+. .+|.+-||.+.-+|+.+.|..-++++|.....+. +.+.+-+-+|..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~ra--SayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERA--SAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccch--HhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 4445555 99999999999999999984 8999999999999999999999999999865443 356666778889
Q ss_pred cCCHHHHHHHHHHHHhc
Q 000176 1865 LGDVDLIRGLFERAISL 1881 (1924)
Q Consensus 1865 ~gd~~~ar~lferal~~ 1881 (1924)
.|+-+.||.-|++|-..
T Consensus 128 ~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQL 144 (175)
T ss_pred hCchHHHHHhHHHHHHh
Confidence 99999999999999983
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.46 Score=54.51 Aligned_cols=147 Identities=12% Similarity=0.093 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-----CHHHHHHHHH
Q 000176 1732 EEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-----QQEGVQAVVQ 1806 (1924)
Q Consensus 1732 ~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-----~~~~A~~l~~ 1806 (1924)
.+.|.....+ -...+.+..-..++.+..+.+.|....++|.... .-.....+|+.+... ++..|.-+|+
T Consensus 124 ~deAl~~~~~----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id--ed~tLtQLA~awv~la~ggek~qdAfyife 197 (299)
T KOG3081|consen 124 FDEALKALHL----GENLEAAALNVQILLKMHRFDLAEKELKKMQQID--EDATLTQLAQAWVKLATGGEKIQDAFYIFE 197 (299)
T ss_pred hHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3555544433 2223445555556777888888888888888653 233333344444332 7899999999
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCCc
Q 000176 1807 RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL-IRGLFERAISLSLPP 1885 (1924)
Q Consensus 1807 ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~-ar~lferal~~~~~p 1885 (1924)
..-..+|.. +.+....|.+.+.+|++++|.++++.+|..+++.++.....+-.-...|.... ......+... ..|
T Consensus 198 E~s~k~~~T--~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~--~~p 273 (299)
T KOG3081|consen 198 ELSEKTPPT--PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL--SHP 273 (299)
T ss_pred HHhcccCCC--hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh--cCC
Confidence 998865443 47888889999999999999999999999999999988888877777775433 3334444333 455
Q ss_pred hhH
Q 000176 1886 KKM 1888 (1924)
Q Consensus 1886 k~~ 1888 (1924)
...
T Consensus 274 ~h~ 276 (299)
T KOG3081|consen 274 EHP 276 (299)
T ss_pred cch
Confidence 443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.27 Score=58.04 Aligned_cols=161 Identities=15% Similarity=0.076 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC------CC-------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcC
Q 000176 1714 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC------DP-------KKVHLALLGLYERTEQNKLADELLYKMIKKFK 1780 (1924)
Q Consensus 1714 l~lWiayl~le~~~g~~~~e~a~~vferAl~~~------~~-------~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~ 1780 (1924)
...+.+|+|++..+.. ..-|.+++++. |. ...+..+++.+.-.+.++++++.|+.+.+.-.
T Consensus 80 ~~~~ea~lnlar~~e~------l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~ 153 (518)
T KOG1941|consen 80 DFLLEAYLNLARSNEK------LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAH 153 (518)
T ss_pred HHHHHHHHHHHHHHHH------HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 4567788888665542 22244444332 21 25666677777777888888888888886532
Q ss_pred --C----CHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCC--------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1781 --H----SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH--------KHIKFISQTAILEFKNGVADRGRSMFEGIL 1845 (1924)
Q Consensus 1781 --~----~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~--------~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL 1845 (1924)
+ ...++..++.++.+. ++++|.-...+|....... .+.-+.+.+|-.+...|..-.|.+..+.+.
T Consensus 154 ~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~ 233 (518)
T KOG1941|consen 154 NNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAM 233 (518)
T ss_pred ccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 1 245677888888777 8888887777776654221 112344555555667777777777777775
Q ss_pred HhC---CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1846 SEY---PKR---TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1846 ~~~---Pk~---~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
+.. .++ ..-...++|+|...||.++|-.-||.|..
T Consensus 234 klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 234 KLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 542 232 23466788888888888888888887775
|
|
| >smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1 | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.079 Score=54.88 Aligned_cols=106 Identities=14% Similarity=0.221 Sum_probs=67.4
Q ss_pred HHHHHHHH-HhCCCCChHHHHHHHHHHHHH---cC-CHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCC
Q 000176 1802 QAVVQRAL-LSLPRHKHIKFISQTAILEFK---NG-VADRGRSMFEGILSEY---------PKRTDLWSIYLDQEIRLGD 1867 (1924)
Q Consensus 1802 ~~l~~ral-~~~p~~~~~~~~~~~A~le~~---~g-~~e~Ar~lfe~aL~~~---------Pk~~dlw~~y~~le~k~gd 1867 (1924)
++.|+..| .....++.+..|..|..+... .| .-..-..++|++++.+ |.-..+|..|+++- +
T Consensus 5 r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~---~- 80 (125)
T smart00777 5 RQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC---D- 80 (125)
T ss_pred HHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc---C-
Confidence 44455444 333333445566666555442 12 2223445555555443 33345899999873 3
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000176 1868 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQK 1914 (1924)
Q Consensus 1868 ~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~r 1914 (1924)
..+.+|.-+....+-.+-+ .||..|+.+.+..|+...|..+|++
T Consensus 81 --dp~~if~~L~~~~IG~~~A-lfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 81 --EPRELFQFLYSKGIGTKLA-LFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred --CHHHHHHHHHHCCcchhhH-HHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3677888888877776667 7999999999999999999999875
|
Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p. |
| >TIGR00757 RNaseEG ribonuclease, Rne/Rng family | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.019 Score=72.02 Aligned_cols=71 Identities=23% Similarity=0.397 Sum_probs=56.0
Q ss_pred ccCCCcEEEEEEEEeecc--eEEEEEecCceeEEeeccccCcc------------cccCcccccCCCcEEEEEEEEEecC
Q 000176 1454 NLHVGDIVIGQIKRVESY--GLFITIENTNLVGLCHVSELSED------------HVDNIETIYRAGEKVKVKILKVDKE 1519 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~--GvFV~l~~~~v~gl~h~sels~~------------~~~~~~~~~~~Gd~Vk~~Vl~id~e 1519 (1924)
...+|+++.|+|++|.++ |+||+|+. +-.||+|++++.+. ...+..+.+++||.|.|.|++--..
T Consensus 22 ~~~vGnIY~GrV~~i~p~l~aAFVdiG~-~k~gfL~~~d~~~~~~~~~~~~~~~~~~~~i~~~l~~G~~IlVQV~Ke~~~ 100 (414)
T TIGR00757 22 RQLKGNIYKGRVTRILPSLQAAFVDIGL-EKNGFLHASDIGPNYECLAPAEAKREAGPSISELLRPGQSVLVQVVKEPRG 100 (414)
T ss_pred cCCCCCEEEEEEeeecCCCceEEEEcCC-CceEEEEHHHcCchhhccccccccccccCCHHHhCcCCCEEEEEEeeCCcC
Confidence 456899999999999998 99999975 78999999998653 2334566799999999999994333
Q ss_pred CCeeEE
Q 000176 1520 KRRISL 1525 (1924)
Q Consensus 1520 ~~ri~l 1525 (1924)
.+.-.|
T Consensus 101 ~Kgp~l 106 (414)
T TIGR00757 101 NKGARL 106 (414)
T ss_pred CCCCeE
Confidence 333333
|
The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome. |
| >cd05790 S1_Rrp40 S1_Rrp40: Rrp40 S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.047 Score=52.55 Aligned_cols=71 Identities=21% Similarity=0.261 Sum_probs=58.9
Q ss_pred CCCEEEEEEEEEecCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCEEEEEEEEEecccCCceEEEEeeecc
Q 000176 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1336 (1924)
Q Consensus 1259 ~G~~v~g~V~~v~~~~~g~~V~l~~~~~G~v~~selsd~~~~~p~~~~~~G~~v~~~Vl~vd~~~~~~~~i~LSlr~~ 1336 (1924)
+||.|-|+|+.+... +..|+|+....|++|..++... +......|++|+.|.|+|..+++. ....||...+
T Consensus 6 ~gD~VIG~V~~~~~~--~~~VdI~s~~~a~L~~~~f~ga-tk~~rp~L~~GDlV~ArV~~~~~~----~~~eLtc~~~ 76 (86)
T cd05790 6 KGDHVIGIVVAKAGD--FFKVDIGGSEPASLSYLAFEGA-TKRNRPNLNVGDLVYARVVKANRD----MEPELSCVDS 76 (86)
T ss_pred CCCEEEEEEEEEcCC--eEEEEcCCCcceEechHHcccc-cccccccCCCCCEEEEEEEecCCC----CCeEEEEeCC
Confidence 899999999999988 9999999989999999877433 333456789999999999999873 4578888654
|
S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure". |
| >KOG2916 consensus Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.011 Score=66.16 Aligned_cols=90 Identities=23% Similarity=0.301 Sum_probs=77.3
Q ss_pred CCCEEEEEEEEEecCeEEEEE--CCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeecccccCCC
Q 000176 761 PNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838 (1924)
Q Consensus 761 ~G~~~~G~V~~i~~~G~fV~f--~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~~~~~ 838 (1924)
+++++.+.|.+|.+.|++|.+ ||++.|++..|++|..++...+...++|-.=.|.|+.+|.+++=|-||.+...+ .
T Consensus 16 v~e~VmvnV~sIaemGayv~LlEYnniEGmiLlsELSrRRIRSI~klirVGr~E~vvVlrVDkekGYIDLSkrrVs~--e 93 (304)
T KOG2916|consen 16 VEEIVMVNVRSIAEMGAYVKLLEYNNIEGMILLSELSRRRIRSIQKLIRVGRNEPVVVLRVDKEKGYIDLSKRRVSP--E 93 (304)
T ss_pred cccEEEEEeeEehhccceEeeeecCCcccchhhhHHHHHHHHHHHHHHhcCCcceEEEEEEcCCCCceechhccCCH--H
Confidence 589999999999999999998 689999999999999999999999999999999999999999999999987643 2
Q ss_pred chhhHHHHHHHHHH
Q 000176 839 DASFMQEHFLLEEK 852 (1924)
Q Consensus 839 d~~~~~~~~~~~~~ 852 (1924)
|..-+.+-|+..++
T Consensus 94 d~~kC~Er~~ksK~ 107 (304)
T KOG2916|consen 94 DKEKCEERFAKSKL 107 (304)
T ss_pred HHHHHHHHHHHhHH
Confidence 44444444544443
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.014 Score=44.94 Aligned_cols=32 Identities=34% Similarity=0.733 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000176 1832 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1863 (1924)
Q Consensus 1832 g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~ 1863 (1924)
|+.++|+.+|++++...|...++|..|++++.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 46777888888888888888888888887764
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.73 E-value=2.5 Score=56.03 Aligned_cols=218 Identities=13% Similarity=0.080 Sum_probs=137.3
Q ss_pred HcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhCC
Q 000176 1687 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD--PKKVHLALLGLYERTEQ 1764 (1924)
Q Consensus 1687 ~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~--~~~i~~~l~~i~~~~gk 1764 (1924)
..+++.+|..-.++.++..|... ...+.-+|.- .+.|.. ++|...++ |+...+ +......+-.+|.+.++
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~---~a~vLkaLsl--~r~gk~--~ea~~~Le-~~~~~~~~D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNAL---YAKVLKALSL--FRLGKG--DEALKLLE-ALYGLKGTDDLTLQFLQNVYRDLGK 92 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcH---HHHHHHHHHH--HHhcCc--hhHHHHHh-hhccCCCCchHHHHHHHHHHHHHhh
Confidence 45778899999999999988543 2334445443 355643 66664443 443322 34667777789999999
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC---------H
Q 000176 1765 NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV---------A 1834 (1924)
Q Consensus 1765 ~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~---------~ 1834 (1924)
+++|..+|++++.+||. .+..+.|-..+.+. .+.+-+++==+.-+.+|.+.+ -+|.-........-. .
T Consensus 93 ~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~y-yfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 93 LDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAY-YFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred hhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc-hHHHHHHHHHHhccCCcccccchhH
Confidence 99999999999999987 66666666666655 444433333333347787763 566655544442222 3
Q ss_pred HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000176 1835 DRGRSMFEGILSEYPK--RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVK 1912 (1924)
Q Consensus 1835 e~Ar~lfe~aL~~~Pk--~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~ 1912 (1924)
.-|+.++++.+....+ ...-...|......+|.+++|..++.+-+...+++-+. .+-.+-+++-...+...+.-++.
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~-~l~~~~~dllk~l~~w~~l~~l~ 249 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANL-YLENKKLDLLKLLNRWQELFELS 249 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccch-HHHHHHHHHHHHhcChHHHHHHH
Confidence 4577777777766521 22235556677778899999999997766655555444 45455556666666655544443
Q ss_pred HHH
Q 000176 1913 QKA 1915 (1924)
Q Consensus 1913 ~rA 1915 (1924)
.|+
T Consensus 250 ~~L 252 (932)
T KOG2053|consen 250 SRL 252 (932)
T ss_pred HHH
Confidence 333
|
|
| >PRK12328 nusA transcription elongation factor NusA; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.032 Score=67.68 Aligned_cols=106 Identities=19% Similarity=0.280 Sum_probs=74.3
Q ss_pred CCCCCCEEEEEEEEEe-CCeEEEEEccccccc-----hhhHhhhhcccCCCcEEEEEEEEEEcc-eEEEEEcCCeEEEee
Q 000176 542 KFKVGAELVFRVLGVK-SKRITVTHKKTLVKS-----KLAILSSYAEATDRLITHGWITKIEKH-GCFVRFYNGVQGFAP 614 (1924)
Q Consensus 542 ~f~vG~~vk~rVl~v~-~~~l~lT~K~~Lv~~-----~~~~~~~~~~~~~G~~~~G~V~~i~~~-G~~V~f~~~v~g~lp 614 (1924)
.+++|+.+..-+---+ .+...-|.|..+... ...+...|.+ +.|+++.|+|.++... ++||++ |++.|+||
T Consensus 90 ~~~vGd~i~~~i~~~~fgRiaaq~akq~i~Qkir~~er~~i~~ey~~-~~Geiv~g~V~r~~~~~~i~vdl-g~~ea~LP 167 (374)
T PRK12328 90 SVEIGDELTYELSLENMGRTAANTLFKELEYHIQRLLEESIFEKYKK-KVGKIVFGTVVRVDNEENTFIEI-DEIRAVLP 167 (374)
T ss_pred CCCCCCEEEEecChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcEEEEEEEEEecCCCEEEEc-CCeEEEeC
Confidence 5899999986442112 222223344443221 0112233432 4799999999999874 599999 68999999
Q ss_pred CcccCCCCCCCCCCCCCCCCEEEEEEEEEcCCCC---EEEEEEe
Q 000176 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR---RINLSFM 655 (1924)
Q Consensus 615 ~sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~~---ri~lS~k 655 (1924)
.++.. |.+.|++|+.++|.|.+|+...+ .+.||..
T Consensus 168 ~~eqi------p~E~~~~Gdrik~~i~~V~~~~k~gp~IilSRt 205 (374)
T PRK12328 168 MKNRI------KGEKFKVGDVVKAVLKRVKIDKNNGILIELSRT 205 (374)
T ss_pred HHHcC------CCCcCCCCCEEEEEEEEEecCCCCCCEEEEEcC
Confidence 99984 56789999999999999998766 7888874
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.66 Score=54.97 Aligned_cols=172 Identities=13% Similarity=-0.043 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC----hHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFK-----HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK----HIK 1819 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~-----~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~----~~~ 1819 (1924)
+.|..++.-+++..++.++..+-...+.... ....+...++..++.. .++++.+.|+.|++...... ..+
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 6677777777777888888777766665432 2345566677777777 89999999999998653321 147
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C-CCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chhH
Q 000176 1820 FISQTAILEFKNGVADRGRSMFEGILSEY---P-KRTD------LWSIYLDQEIRLGDVDLIRGLFERAISLSLP-PKKM 1888 (1924)
Q Consensus 1820 ~~~~~A~le~~~g~~e~Ar~lfe~aL~~~---P-k~~d------lw~~y~~le~k~gd~~~ar~lferal~~~~~-pk~~ 1888 (1924)
++..++.++-+..|+++|.....+++... . +++. +.+.++-.+..+|..-.|.+..+.+....+- -+++
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 89999999999999999999999887643 2 3332 3444555566788888888888888763211 1121
Q ss_pred H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000176 1889 K--FLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921 (1924)
Q Consensus 1889 k--~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~ 1921 (1924)
- .-...+.|+.+..||.+.+-.-|+.|+....+
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~ 278 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS 278 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh
Confidence 0 12445668888889999888888888765544
|
|
| >PRK12328 nusA transcription elongation factor NusA; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.04 Score=66.89 Aligned_cols=70 Identities=17% Similarity=0.220 Sum_probs=58.9
Q ss_pred CCCEEEEEEEEEecCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCEEEEEEEEEecccCCceEEEEeeecc
Q 000176 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1336 (1924)
Q Consensus 1259 ~G~~v~g~V~~v~~~~~g~~V~l~~~~~G~v~~selsd~~~~~p~~~~~~G~~v~~~Vl~vd~~~~~~~~i~LSlr~~ 1336 (1924)
.|++++|+|.++... ++++|+|| +..|++|..|.. |.+.|++|+.++|+|.+++...++...+.||+..+
T Consensus 138 ~Geiv~g~V~r~~~~-~~i~vdlg-~~ea~LP~~eqi------p~E~~~~Gdrik~~i~~V~~~~k~gp~IilSRt~p 207 (374)
T PRK12328 138 VGKIVFGTVVRVDNE-ENTFIEID-EIRAVLPMKNRI------KGEKFKVGDVVKAVLKRVKIDKNNGILIELSRTSP 207 (374)
T ss_pred cCcEEEEEEEEEecC-CCEEEEcC-CeEEEeCHHHcC------CCCcCCCCCEEEEEEEEEecCCCCCCEEEEEcCCH
Confidence 899999999999864 16999998 799999988873 77899999999999999998754125788888544
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.38 Score=55.33 Aligned_cols=130 Identities=18% Similarity=0.039 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHH----------HH-----------
Q 000176 1751 VHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQ----------RA----------- 1808 (1924)
Q Consensus 1751 i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~----------ra----------- 1808 (1924)
....++-.|....+++.|.+.|+++...+|+..+.-+-+++-+.+. .+..|..+.. ++
T Consensus 46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse 125 (459)
T KOG4340|consen 46 GLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSE 125 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhccc
Confidence 3344444555555555555555555555555444444444444444 3333322211 11
Q ss_pred ---------HHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH----H
Q 000176 1809 ---------LLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGL----F 1875 (1924)
Q Consensus 1809 ---------l~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~l----f 1875 (1924)
+...|...........|.+.++.|++|.|..-|+.+++...-+.-+-+..+-.+++.++++.|..+ .
T Consensus 126 ~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIi 205 (459)
T KOG4340|consen 126 GDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEII 205 (459)
T ss_pred ccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 122343333577888899999999999999999999998877777777778888899999887654 5
Q ss_pred HHHHh
Q 000176 1876 ERAIS 1880 (1924)
Q Consensus 1876 eral~ 1880 (1924)
+|.+.
T Consensus 206 eRG~r 210 (459)
T KOG4340|consen 206 ERGIR 210 (459)
T ss_pred Hhhhh
Confidence 55554
|
|
| >COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.21 Score=56.64 Aligned_cols=103 Identities=16% Similarity=0.200 Sum_probs=75.0
Q ss_pred CCCCCCEEEEEEEEE---eCCeEEEEEccccccchhhHhhhhcccCCCcEEEEEEEEEEcceEEEEEcCCeEEEeeCccc
Q 000176 542 KFKVGAELVFRVLGV---KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 618 (1924)
Q Consensus 542 ~f~vG~~vk~rVl~v---~~~~l~lT~K~~Lv~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel 618 (1924)
.|..|+++.+.|... ..+.+.+ -+ .-..|- -+.|+++.|.|..+...|..|++++...+++|.|++
T Consensus 29 ty~~~~~iyssv~G~~~~~~~~v~V--Ip--------l~g~Yi-P~~gD~VIG~I~~v~~~~W~VDI~sp~~A~L~ls~~ 97 (239)
T COG1097 29 TYFEGGKIYSSVVGLLDVKGKLVRV--IP--------LEGRYI-PEVGDVVIGKIIEVGPSGWKVDIGSPYPALLSLSDF 97 (239)
T ss_pred cEecCCEEEEEEEeEEEEeCCEEEE--Ee--------CCCccc-CCCCCEEEEEEEEEcccceEEEcCCccceEeehhhh
Confidence 456778888777765 2222211 11 111231 246999999999999999999999889999999998
Q ss_pred CCCC----CCCCCCCCCCCCEEEEEEEEEcCCCCEEEEEEee
Q 000176 619 GLDP----GCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656 (1924)
Q Consensus 619 ~~~~----~~~~~~~~~vGq~v~~rVl~vd~~~~ri~lS~k~ 656 (1924)
-... ..+....|.+|+.|.|+|.++|+ .....|+++.
T Consensus 98 ~~r~~~~~~~~~r~~l~vGD~v~AkV~~vd~-~~~~~L~~k~ 138 (239)
T COG1097 98 LRRKFENAEKDLRPFLNVGDLVYAKVVDVDR-DGEVELTLKD 138 (239)
T ss_pred hcccccccccccccccccCCEEEEEEEEccC-CCceEEEeec
Confidence 3222 24667789999999999999996 4677788753
|
|
| >PF13509 S1_2: S1 domain; PDB: 3GO5_A | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.047 Score=49.24 Aligned_cols=61 Identities=13% Similarity=0.018 Sum_probs=36.8
Q ss_pred CCCEEEEEEEEEecCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCEEEEEEEEEecccCCceEEEEeee
Q 000176 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334 (1924)
Q Consensus 1259 ~G~~v~g~V~~v~~~~~g~~V~l~~~~~G~v~~selsd~~~~~p~~~~~~G~~v~~~Vl~vd~~~~~~~~i~LSlr 1334 (1924)
.|++.+.+|.++++. |+|++.+.+..-++|..|+. ..+++|+.|.++|+. |. .+++.++++
T Consensus 1 iG~~~~L~V~~~~~~--g~fL~~~~~~~vlLp~~e~~--------~~~~~Gd~v~VFvY~-D~----~~rl~AT~k 61 (61)
T PF13509_consen 1 IGQINTLKVVDKNEF--GYFLDDGEGKEVLLPKSEVP--------EPLKVGDEVEVFVYL-DK----EGRLVATTK 61 (61)
T ss_dssp --------EEEE-SS--EEEEEETT-EEEEEEGGG--------------TTSEEEEEEEE--T----TS-EEEE--
T ss_pred CCCCcceEEEEEeCC--EEEEECCCCCEEEechHHcC--------CCCCCCCEEEEEEEE-CC----CCCEEEecC
Confidence 488899999999999 99999998899999999983 447799999999887 43 357777763
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.016 Score=45.52 Aligned_cols=33 Identities=18% Similarity=0.370 Sum_probs=31.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 000176 1664 FERLVRSSPNSSFVWIKYMAFMLSMADVEKARS 1696 (1924)
Q Consensus 1664 ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~ 1696 (1924)
|+++|..+|+++.+|..|+.++...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 789999999999999999999999999999973
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.096 Score=56.93 Aligned_cols=90 Identities=13% Similarity=0.003 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-C----------HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC
Q 000176 1765 NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q----------QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1833 (1924)
Q Consensus 1765 ~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~----------~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~ 1833 (1924)
++.|++.++....+.|.+.+.+++|+..|+.. + +++|..-|+.||..+|... +++..+|..+..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~h--dAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKH--DALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-H--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchH--HHHHHHHHHHHHHHh
Confidence 46788888888888888899888888888766 2 4566777788888888873 677777777664432
Q ss_pred -----------HHHHHHHHHHHHHhCCCCHHHHH
Q 000176 1834 -----------ADRGRSMFEGILSEYPKRTDLWS 1856 (1924)
Q Consensus 1834 -----------~e~Ar~lfe~aL~~~Pk~~dlw~ 1856 (1924)
+++|...|++++...|.+...+.
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~k 118 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRK 118 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 67788888888888898855444
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1 | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.17 Score=52.53 Aligned_cols=89 Identities=17% Similarity=0.176 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHh----CChHHHHHHHHHHHHhcCC---------CHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Q 000176 1749 KKVHLALLGLYERT----EQNKLADELLYKMIKKFKH---------SCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRH 1815 (1924)
Q Consensus 1749 ~~i~~~l~~i~~~~----gk~e~A~~~fe~~lk~~~~---------~~~vw~~~a~~l~~~~~~~A~~l~~ral~~~p~~ 1815 (1924)
..+|..++....++ +.-..-..+++++++.|.+ ..++|+.|+.+. +.++++|+-+...--..
T Consensus 22 L~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~-----~dp~~if~~L~~~~IG~ 96 (125)
T smart00777 22 LDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC-----DEPRELFQFLYSKGIGT 96 (125)
T ss_pred hHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHCCcch
Confidence 45555555544321 1223344455555544421 134555555532 23445555555444344
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000176 1816 KHIKFISQTAILEFKNGVADRGRSMFE 1842 (1924)
Q Consensus 1816 ~~~~~~~~~A~le~~~g~~e~Ar~lfe 1842 (1924)
.+..+|..||.++...|++.+|..+|+
T Consensus 97 ~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 97 KLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445556666666666666666666654
|
Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p. |
| >KOG1856 consensus Transcription elongation factor SPT6 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.015 Score=77.07 Aligned_cols=79 Identities=29% Similarity=0.352 Sum_probs=72.0
Q ss_pred ccCCCCCEEEEEEEEEeece---EEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecc
Q 000176 1363 EDLSPNMIVQGYVKNVTSKG---CFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439 (1924)
Q Consensus 1363 ~~lk~G~~v~G~V~~v~~~G---~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~ 1439 (1924)
+.+-+|.+|.+.|++|+..- +-|.+..|+.|+|+.+++|+.-+.+|...+++||.|.|+|+++|.++=.+.||+|.+
T Consensus 981 et~~~g~iV~~~V~~vt~rr~~Cv~v~ld~G~~g~i~~~~~Sd~~v~~p~~~v~vgq~v~~kvi~id~e~f~v~Ls~r~s 1060 (1299)
T KOG1856|consen 981 ETFYEGAIVPVTVTKVTHRRGICVRVRLDCGVTGFILAKNLSDRDVRRPENRVKVGQTVYCKVIKIDKERFSVELSCRTS 1060 (1299)
T ss_pred hHhccCceEEEeeeEEEecccceeEEEecCCCceeeeccccChhhccCHHHhhccCceEEEEeeeeeHhhhhhhhhhhhH
Confidence 45789999999999997754 467899999999999999999899999999999999999999999999999999998
Q ss_pred cc
Q 000176 1440 DS 1441 (1924)
Q Consensus 1440 ~~ 1441 (1924)
+.
T Consensus 1061 dl 1062 (1299)
T KOG1856|consen 1061 DL 1062 (1299)
T ss_pred Hh
Confidence 75
|
|
| >TIGR00757 RNaseEG ribonuclease, Rne/Rng family | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.036 Score=69.50 Aligned_cols=60 Identities=17% Similarity=0.197 Sum_probs=50.8
Q ss_pred CCCCCEEEEEEEEEeec--eEEEEeCCCcEEEEECccCCCcc------------cCCCCccCCCCcEEEEEEEE
Q 000176 1365 LSPNMIVQGYVKNVTSK--GCFIMLSRKLDAKVLLSNLSDGY------------VESPEKEFPIGKLVAGRVLS 1424 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~--G~fV~l~~~v~g~v~~selsd~~------------~~~~~~~f~~G~~V~~kVl~ 1424 (1924)
..+|+++.|+|+++.+. |+||+||.+..||+|++++.+.+ ..+..+.+++||.|.+.|+.
T Consensus 23 ~~vGnIY~GrV~~i~p~l~aAFVdiG~~k~gfL~~~d~~~~~~~~~~~~~~~~~~~~i~~~l~~G~~IlVQV~K 96 (414)
T TIGR00757 23 QLKGNIYKGRVTRILPSLQAAFVDIGLEKNGFLHASDIGPNYECLAPAEAKREAGPSISELLRPGQSVLVQVVK 96 (414)
T ss_pred CCCCCEEEEEEeeecCCCceEEEEcCCCceEEEEHHHcCchhhccccccccccccCCHHHhCcCCCEEEEEEee
Confidence 45899999999999998 99999999999999999997632 22344568899999999876
|
The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.32 E-value=6 Score=47.71 Aligned_cols=227 Identities=15% Similarity=0.124 Sum_probs=140.8
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCc--chhhHH-HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCC-------------
Q 000176 1686 LSMADVEKARSIAERALQTINIR--EENEKL-NIWVAYFNLENEYG-NPPEEAVVKVFQRALQYCDP------------- 1748 (1924)
Q Consensus 1686 ~~~~e~dkAr~v~eraL~~i~~~--ee~ekl-~lWiayl~le~~~g-~~~~e~a~~vferAl~~~~~------------- 1748 (1924)
..+|+++.|...+.|+-...+.. ...+.+ .+......-....+ .+ +.|..-++||..+.+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~--~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKY--EEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 45689999999999988644221 111111 33333333333344 44 8889999999988411
Q ss_pred --HHHHHHHHHHHHHhCCh---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCC-CCChHHHH
Q 000176 1749 --KKVHLALLGLYERTEQN---KLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP-RHKHIKFI 1821 (1924)
Q Consensus 1749 --~~i~~~l~~i~~~~gk~---e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p-~~~~~~~~ 1821 (1924)
..+...++..|...+.+ ++|..+.+.+-+.|++.+.++.....++.+. +.+++.+.+.+++...+ ....+...
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~ 161 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHH
Confidence 16677777788777664 4566677778888999999998888888888 99999999999999886 33445555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH----Hc----CC---HHHHHHHHHHHHh---cCCCc
Q 000176 1822 SQTAILEFKNGVADRGRSMFEGILSE--YPKRTDLWSIYLDQEI----RL----GD---VDLIRGLFERAIS---LSLPP 1885 (1924)
Q Consensus 1822 ~~~A~le~~~g~~e~Ar~lfe~aL~~--~Pk~~dlw~~y~~le~----k~----gd---~~~ar~lferal~---~~~~p 1885 (1924)
............ ..|...+..+|.. .|...+ |..-+-+.. .. .+ .+.+..+++++-+ ..+.+
T Consensus 162 l~~i~~l~~~~~-~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 162 LHHIKQLAEKSP-ELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHHHHHHhhCc-HHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 555555555444 4555555555543 344333 543332222 11 12 3344455554333 23444
Q ss_pred hhHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1886 KKMK----FLFKKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1886 k~~k----~lw~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
+.+. .+|+.--..+. .+++..|..-|+-|+.
T Consensus 240 ~~~~a~~~LLW~~~~~~~~-~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYK-AKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHH
Confidence 3321 46887655544 7899999999988774
|
It is also involved in sporulation []. |
| >PRK05054 exoribonuclease II; Provisional | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.047 Score=72.89 Aligned_cols=69 Identities=13% Similarity=0.122 Sum_probs=57.6
Q ss_pred CCEEEEEEEEEeeceEEEEeCC-CcEEEEECccCCCc---cc--CC-------CCccCCCCcEEEEEEEEEeCCCCEEEE
Q 000176 1368 NMIVQGYVKNVTSKGCFIMLSR-KLDAKVLLSNLSDG---YV--ES-------PEKEFPIGKLVAGRVLSVEPLSKRVEV 1434 (1924)
Q Consensus 1368 G~~v~G~V~~v~~~G~fV~l~~-~v~g~v~~selsd~---~~--~~-------~~~~f~~G~~V~~kVl~vd~e~~ri~L 1434 (1924)
|+...|.|..++++|+||+|.. +++|+||++.|.+. |. .+ -...|+.||.|+++|.++|.+.++|.+
T Consensus 562 ~~~f~g~I~~v~~~G~fV~l~~~~veglV~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~lGd~V~V~v~~vd~~~~~i~~ 641 (644)
T PRK05054 562 DTRFAAEIIDISRGGMRVRLLENGAVAFIPASFLHAVRDELVCNQENGTVQIKGETVYKLGDVIDVTLAEVRMETRSIIA 641 (644)
T ss_pred CeEEEEEEEeeecCcEEEEEeCCceEEEEEccccCCCccceEEccccceEEEeCCEEEcCCCEEEEEEEEEccccCeEEE
Confidence 4599999999999999999965 59999999999763 21 11 124799999999999999999999987
Q ss_pred Ee
Q 000176 1435 TL 1436 (1924)
Q Consensus 1435 Sl 1436 (1924)
++
T Consensus 642 ~~ 643 (644)
T PRK05054 642 RP 643 (644)
T ss_pred EE
Confidence 64
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.8 Score=52.08 Aligned_cols=205 Identities=13% Similarity=0.235 Sum_probs=128.0
Q ss_pred CCchHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---cchhh-HHHHHHHHHHHHHHcC
Q 000176 1657 APRTPDEFERLVRSSPNS----SFVWIKYMAFMLSMADVEKARSIAERALQTINI---REENE-KLNIWVAYFNLENEYG 1728 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s----~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~---~ee~e-kl~lWiayl~le~~~g 1728 (1924)
..+|...|++.|...|.- ..+..+.+.....++.+++..+.|.+.|.-|.. +.-.| ..|--+.|+.--.+.
T Consensus 43 p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m- 121 (440)
T KOG1464|consen 43 PKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM- 121 (440)
T ss_pred HHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh-
Confidence 445677888888777653 233455666778899999999999888753321 11122 245666666632222
Q ss_pred CCCHHHHHHHHHH---HHhcCCCHHHHH----HHHHHHHHhCChHHHHHHHHHHHHhc------------CCCHHHHHHH
Q 000176 1729 NPPEEAVVKVFQR---ALQYCDPKKVHL----ALLGLYERTEQNKLADELLYKMIKKF------------KHSCKVWLRR 1789 (1924)
Q Consensus 1729 ~~~~e~a~~vfer---Al~~~~~~~i~~----~l~~i~~~~gk~e~A~~~fe~~lk~~------------~~~~~vw~~~ 1789 (1924)
+-..+.|+. |++-.....+|+ .++.+|...+.|-+...++..+-.-+ .+-..+|-.-
T Consensus 122 ----~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 122 ----DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred ----HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 223333333 333333345554 47777766666655555554433222 1234566666
Q ss_pred HHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH--HHHH
Q 000176 1790 VQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFI----SQTAILEFKNGVADRGRSMFEGILSEY-----PKRTD--LWSI 1857 (1924)
Q Consensus 1790 a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~----~~~A~le~~~g~~e~Ar~lfe~aL~~~-----Pk~~d--lw~~ 1857 (1924)
.++|..+ +..+...+|++||..-..-.|+.++ -.=+.++.+.|.++.|.+-|=.|+++| |.|+. -|.+
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLV 277 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLV 277 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHH
Confidence 6777777 8888899999998765555554332 222457888999999999999999886 55554 3778
Q ss_pred HHHHHHHcC
Q 000176 1858 YLDQEIRLG 1866 (1924)
Q Consensus 1858 y~~le~k~g 1866 (1924)
++.|+++.|
T Consensus 278 LANMLmkS~ 286 (440)
T KOG1464|consen 278 LANMLMKSG 286 (440)
T ss_pred HHHHHHHcC
Confidence 888888753
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=95.17 E-value=1.8 Score=55.05 Aligned_cols=151 Identities=17% Similarity=0.089 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHH------H--Hhc--C-CCHHHHHHHHHHHHhc-CHHHHHHHHHHH------HHh
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKM------I--KKF--K-HSCKVWLRRVQRLLKQ-QQEGVQAVVQRA------LLS 1811 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~------l--k~~--~-~~~~vw~~~a~~l~~~-~~~~A~~l~~ra------l~~ 1811 (1924)
++|-..+.+|++..++++|.+.|.+. + .+| | .-.++-..|+..+.+. +++.|...|-.| +..
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaiea 741 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEA 741 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHH
Confidence 67777888888888999999988752 2 222 3 2244455777777777 777776555332 111
Q ss_pred -------------CC---C-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 000176 1812 -------------LP---R-HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGL 1874 (1924)
Q Consensus 1812 -------------~p---~-~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~l 1874 (1924)
+. + ......|-..|+-|...|++|+|..+|-.+ ++...-++||.+.|..+.|-.+
T Consensus 742 ai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~--------~~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA--------DLFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc--------chhHHHHHHHhccccHHHHHHH
Confidence 00 0 000123445577777889999999998775 5677778889999999998888
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000176 1875 FERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVK 1912 (1924)
Q Consensus 1875 feral~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~ 1912 (1924)
-+.... + ...-.+|..-.+=..++|.+.+++++|
T Consensus 814 a~e~~~---~-e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 814 AEECHG---P-EATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHhcC---c-hhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 877543 2 222234444444344578877777665
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.048 Score=51.74 Aligned_cols=62 Identities=16% Similarity=0.148 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1819 KFISQTAILEFKNGVADRGRSMFEGILSE---YPKR----TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1819 ~~~~~~A~le~~~g~~e~Ar~lfe~aL~~---~Pk~----~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
.++..+|.+++..|++++|.+.|++++.. .+.. ...|..++..+...|++++|...|++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56777888888888888888888888754 3321 23567777777788888888888888776
|
... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.05 E-value=3.3 Score=51.52 Aligned_cols=119 Identities=14% Similarity=0.187 Sum_probs=91.0
Q ss_pred CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----
Q 000176 1780 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK--HIKFISQTAILEFKNGVADRGRSMFEGILSE-YPKR---- 1851 (1924)
Q Consensus 1780 ~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~--~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~-~Pk~---- 1851 (1924)
......|+.++....+. .++.|...+.++....+... .+.+...+|.+....|+.++|...++..+.. ..+.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 35678899999999999 99999999999887653321 3578999999999999999999999888872 1111
Q ss_pred -----------------------------HHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000176 1852 -----------------------------TDLWSIYLDQEIRL------GDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1896 (1924)
Q Consensus 1852 -----------------------------~dlw~~y~~le~k~------gd~~~ar~lferal~~~~~pk~~k~lw~~yl 1896 (1924)
..++..++.+.... ++.+.+...|..++. +.|...+ .|..|.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~~~k-~~~~~a 299 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATK--LDPSWEK-AWHSWA 299 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH--hChhHHH-HHHHHH
Confidence 12466666666666 788899999999998 7776664 788788
Q ss_pred HHHHH
Q 000176 1897 EYEKS 1901 (1924)
Q Consensus 1897 ~~E~~ 1901 (1924)
.+..+
T Consensus 300 ~~~~~ 304 (352)
T PF02259_consen 300 LFNDK 304 (352)
T ss_pred HHHHH
Confidence 76444
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PTZ00162 DNA-directed RNA polymerase II subunit 7; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.066 Score=59.23 Aligned_cols=73 Identities=18% Similarity=0.150 Sum_probs=55.4
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCccc--C----------CCCccCCCCcEEEEEEEEEeCC--CCE
Q 000176 1366 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV--E----------SPEKEFPIGKLVAGRVLSVEPL--SKR 1431 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~--~----------~~~~~f~~G~~V~~kVl~vd~e--~~r 1431 (1924)
-.|+++.|.|+++++.|+||++|+ .++|||.+.|.+... . +-...+..|+.|++||..+..+ +..
T Consensus 80 f~gEVv~g~V~~v~~~G~~v~~Gp-~~ifI~~~~l~~~~~fd~~~~~~~~~~~~~~~~i~~g~~VR~rV~~v~~~~~~~~ 158 (176)
T PTZ00162 80 FKDEVLDAIVTDVNKLGFFAQAGP-LKAFVSRSAIPPDFVYDSDSAYPCYISSDGQIQIKPNTEVRLRLQGVRYDASNLF 158 (176)
T ss_pred CCCCEEEEEEEEEecceEEEEeeC-eEEEEcHHHCCCccEECCCCCcceEecCCCcEEECCCCEEEEEEEEEEecCCCcE
Confidence 379999999999999999999985 669999999985421 1 1134678999999999877543 334
Q ss_pred EEEEeecc
Q 000176 1432 VEVTLKTS 1439 (1924)
Q Consensus 1432 i~LSlk~~ 1439 (1924)
+.+|+|+.
T Consensus 159 ~i~T~~~~ 166 (176)
T PTZ00162 159 AIATINSD 166 (176)
T ss_pred EEEEecCC
Confidence 55566653
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.34 Score=53.62 Aligned_cols=125 Identities=14% Similarity=0.072 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 000176 1751 VHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEF 1829 (1924)
Q Consensus 1751 i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~ 1829 (1924)
+++..+.+|-..|-..-|+--|..++...|+.+.++.-++-++... +++.|.+.|...++..|..+ -+..+-|...+
T Consensus 67 l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~--Ya~lNRgi~~Y 144 (297)
T COG4785 67 LLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN--YAHLNRGIALY 144 (297)
T ss_pred HHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch--HHHhccceeee
Confidence 4444456677778888999999999999999999999999999988 99999999999999999986 45555555556
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCHHHHH-HHHHHHHh
Q 000176 1830 KNGVADRGRSMFEGILSEYPKRTD--LWSIYLDQEIRLGDVDLIR-GLFERAIS 1880 (1924)
Q Consensus 1830 ~~g~~e~Ar~lfe~aL~~~Pk~~d--lw~~y~~le~k~gd~~~ar-~lferal~ 1880 (1924)
--|++.-|..-|-.--+.+|+++- +|...... + -++..|+ ++.+|+-.
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~--k-~dP~~A~tnL~qR~~~ 195 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQ--K-LDPKQAKTNLKQRAEK 195 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHh--h-CCHHHHHHHHHHHHHh
Confidence 678999999999998888888754 78765433 2 3555555 56777765
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.89 Score=57.62 Aligned_cols=185 Identities=12% Similarity=0.069 Sum_probs=94.9
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHH-HH---HHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 000176 1668 VRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL-NI---WVAYFNLENEYGNPPEEAVVKVFQRAL 1743 (1924)
Q Consensus 1668 l~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl-~l---Wiayl~le~~~g~~~~e~a~~vferAl 1743 (1924)
+..+|. +.+|..++.+.++.-+++-|...|-|+-.-.... -..++ .+ -+.....-.-|| ..|+|+.+|-.|=
T Consensus 686 iEdnPH-prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik-~vkrl~~i~s~~~q~aei~~~~g--~feeaek~yld~d 761 (1189)
T KOG2041|consen 686 IEDNPH-PRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIK-LVKRLRTIHSKEQQRAEISAFYG--EFEEAEKLYLDAD 761 (1189)
T ss_pred HhcCCc-hHHHHHHHHHHHHHHhhhhHhhhhhhhccccchh-HHHHhhhhhhHHHHhHhHhhhhc--chhHhhhhhhccc
Confidence 345565 8999999999999999999998888765311100 00000 00 011222223356 3477777776653
Q ss_pred hcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHH
Q 000176 1744 QYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF--KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKF 1820 (1924)
Q Consensus 1744 ~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~--~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~ 1820 (1924)
+..-.-+++..++. +-...+++...-... .....+|.+.++.+... ..++|+++|..+-.
T Consensus 762 rrDLAielr~klgD-------wfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------- 824 (1189)
T KOG2041|consen 762 RRDLAIELRKKLGD-------WFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------- 824 (1189)
T ss_pred hhhhhHHHHHhhhh-------HHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------
Confidence 33222233333333 223333333221111 12245666666666666 67777776665421
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000176 1821 ISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1877 (1924)
Q Consensus 1821 ~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lfer 1877 (1924)
...++..++...+++. +|.+....|.+..+.-.++++....|--++|-+.|-|
T Consensus 825 ~e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 825 TENQIECLYRLELFGE----LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred hHhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 1122223332222222 3444555666666666666666666666666555544
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.64 Score=52.84 Aligned_cols=152 Identities=13% Similarity=0.179 Sum_probs=114.8
Q ss_pred CHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHhCChHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHhc-CH
Q 000176 1731 PEEAVVKVFQRALQYCDPK-----KVHLALLGLYERTEQNKLADELLYKMIKKF------KHSCKVWLRRVQRLLKQ-QQ 1798 (1924)
Q Consensus 1731 ~~e~a~~vferAl~~~~~~-----~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~------~~~~~vw~~~a~~l~~~-~~ 1798 (1924)
..++|..-|++.++..+.. ...-.++.++.+.+++++..+.|..++.-. ..+.+.......|.... +.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 3588999999999988764 677788889999999999999998887532 13455555666666655 77
Q ss_pred HHHHHHHHHHHHhCCCCChHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHH
Q 000176 1799 EGVQAVVQRALLSLPRHKHIKFI----SQTAILEFKNGVADRGRSMFEGILSEYPKR------------TDLWSIYLDQE 1862 (1924)
Q Consensus 1799 ~~A~~l~~ral~~~p~~~~~~~~----~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~------------~dlw~~y~~le 1862 (1924)
+-..+.|+..|..+...+.-.+| .+++.++|..|.+-+-..++.++-.++.+. ..+|..-+++|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 88888888888776544333455 578999999999999999998887766431 23455556788
Q ss_pred HHcCCHHHHHHHHHHHHhcC
Q 000176 1863 IRLGDVDLIRGLFERAISLS 1882 (1924)
Q Consensus 1863 ~k~gd~~~ar~lferal~~~ 1882 (1924)
..+.+-.+...+|+++++.+
T Consensus 202 T~qKnNKkLK~lYeqalhiK 221 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIK 221 (440)
T ss_pred hhhcccHHHHHHHHHHHHhh
Confidence 88888889999999999843
|
|
| >COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.24 Score=53.87 Aligned_cols=103 Identities=19% Similarity=0.215 Sum_probs=75.8
Q ss_pred CCCCCCEEEEEEEEE---eCCeEEEEEccccccchhhHhhhhcccCCCcEEEEEEEEEEcceEEEEEcC----------C
Q 000176 542 KFKVGAELVFRVLGV---KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN----------G 608 (1924)
Q Consensus 542 ~f~vG~~vk~rVl~v---~~~~l~lT~K~~Lv~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~~V~f~~----------~ 608 (1924)
.|..|..+.+-+..+ +.+....+.++.... +.-.+.|+++-|.|+++....+.|+..+ -
T Consensus 26 t~~~~g~i~Aa~~G~~~~d~~n~~~~V~p~~~~--------~~~~K~GdiV~grV~~v~~~~a~V~i~~ve~~~r~~~~~ 97 (188)
T COG1096 26 TYEEGGEIRAAATGVVRRDDKNRVISVKPGKKT--------PPLPKGGDIVYGRVTDVREQRALVRIVGVEGKERELATS 97 (188)
T ss_pred eEeECCEEEEeecccEEEcccceEEEeccCCCC--------CCCCCCCCEEEEEEeeccceEEEEEEEEEecccccCCCC
Confidence 455677777666655 455666666654321 1224679999999999999999998752 1
Q ss_pred eEEEeeCcccCCCCCCCCCCCCCCCCEEEEEEEEEcCCCCEEEEEEe
Q 000176 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655 (1924)
Q Consensus 609 v~g~lp~sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~~ri~lS~k 655 (1924)
..|-+|.|.++.....+.++.|++|+.|+++|++.- ..+.||.+
T Consensus 98 ~~~~ihvs~~~~~~~~~~~d~f~~GDivrA~Vis~~---~~~~Lst~ 141 (188)
T COG1096 98 GAADIHVSQVRDGYVEKLSDAFRIGDIVRARVISTG---DPIQLSTK 141 (188)
T ss_pred ceeeEEEEecccccccccccccccccEEEEEEEecC---CCeEEEec
Confidence 457889999887777788899999999999999973 45777764
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.45 Score=51.16 Aligned_cols=104 Identities=13% Similarity=0.181 Sum_probs=76.0
Q ss_pred HHHHhCChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc
Q 000176 1758 LYERTEQNKLADELLYKMIKKFKHS------CKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1831 (1924)
Q Consensus 1758 i~~~~gk~e~A~~~fe~~lk~~~~~------~~vw~~~a~~l~~~~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~ 1831 (1924)
.....+..+.+.+.+++++..|... ..-|. ...+..|.+.. ..++..++..+...
T Consensus 15 ~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~-----------~~~r~~l~~~~--------~~~~~~l~~~~~~~ 75 (146)
T PF03704_consen 15 AAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWV-----------EPERERLRELY--------LDALERLAEALLEA 75 (146)
T ss_dssp HHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTH-----------HHHHHHHHHHH--------HHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHH-----------HHHHHHHHHHH--------HHHHHHHHHHHHhc
Confidence 3455677888888888888877421 11232 22233333332 46777788888899
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1832 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1832 g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
|++++|..++++++..+|-+..+|..++..+...|+...|...|+++..
T Consensus 76 ~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 76 GDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998765
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.32 Score=53.04 Aligned_cols=95 Identities=19% Similarity=0.203 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--
Q 000176 1798 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG----------VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-- 1865 (1924)
Q Consensus 1798 ~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g----------~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~-- 1865 (1924)
++.|++.++.....+|.+ .+.+.+||..+..+. .++.|.+-|+.+|..+|+..+....++..+..+
T Consensus 7 FE~ark~aea~y~~nP~D--adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLD--ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHh--HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 789999999999999987 588888887665332 367888889999999999988665566655533
Q ss_pred --CC-------HHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000176 1866 --GD-------VDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1898 (1924)
Q Consensus 1866 --gd-------~~~ar~lferal~~~~~pk~~k~lw~~yl~~ 1898 (1924)
.+ +++|...|++|.. ..|.+. +|++-+++
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne--~Y~ksLe~ 122 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVD--EDPNNE--LYRKSLEM 122 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHH--H-TT-H--HHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHHHh--cCCCcH--HHHHHHHH
Confidence 33 4556666666666 445443 55555544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PRK12329 nusA transcription elongation factor NusA; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.12 Score=63.82 Aligned_cols=69 Identities=16% Similarity=0.224 Sum_probs=58.0
Q ss_pred CCCEEEEEEEEEecCcCeEEEEeC----C-ceEEEEecccccccccCCCCCCCCCCCEEEEEEEEEeccc-CCceEEEEe
Q 000176 1259 EGDIVGGRISKILSGVGGLVVQIG----P-HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTV-RGTFHVELS 1332 (1924)
Q Consensus 1259 ~G~~v~g~V~~v~~~~~g~~V~l~----~-~~~G~v~~selsd~~~~~p~~~~~~G~~v~~~Vl~vd~~~-~~~~~i~LS 1332 (1924)
.|++++|+|.++... +++|+|+ . +..|++|..|. -|.+.|++|+.++|+|.+|.... +| ..|.||
T Consensus 152 ~GeIV~G~V~r~e~~--~viv~l~~~~g~~~~EaiLP~~Eq------ip~E~y~~Gdrika~i~~V~~~~~kG-pqIilS 222 (449)
T PRK12329 152 EDTVLTARVLRFERQ--SVIMAVSSGFGQPEVEAELPKREQ------LPNDNYRANATFKVFLKEVSEGPRRG-PQLFVS 222 (449)
T ss_pred cCcEEEEEEEEEcCC--CEEEEecccCCCcceEEEecHHHc------CCCCcCCCCCEEEEEEEEeecCCCCC-CEEEEE
Confidence 899999999999888 9999993 3 48999998886 37789999999999999998763 43 578888
Q ss_pred eecc
Q 000176 1333 LRSS 1336 (1924)
Q Consensus 1333 lr~~ 1336 (1924)
+..+
T Consensus 223 Rt~p 226 (449)
T PRK12329 223 RANA 226 (449)
T ss_pred cCCH
Confidence 8544
|
|
| >PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.037 Score=42.12 Aligned_cols=30 Identities=27% Similarity=0.538 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 000176 1867 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1900 (1924)
Q Consensus 1867 d~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~ 1900 (1924)
++++||.+|||.+. ..|.. ..|.+|+.||+
T Consensus 2 E~dRAR~IyeR~v~--~hp~~--k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEV--KNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCc--hHHHHHHHhhc
Confidence 35666666666666 33332 25666666654
|
They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.47 E-value=1.7 Score=51.16 Aligned_cols=143 Identities=15% Similarity=0.046 Sum_probs=93.5
Q ss_pred HHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHH---HHHHHHHcCCH
Q 000176 1759 YERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQ---TAILEFKNGVA 1834 (1924)
Q Consensus 1759 ~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~---~A~le~~~g~~ 1834 (1924)
....+++.+|..+|..++...+.+..+-+.|+..++.. +.+.|..+|... |...+-+.|.. ...++.+....
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l----P~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL----PLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC----cccchhhHHHHHHHHHHHHHHHhcC
Confidence 45677888888888888888888888888888888888 888888777653 33222222222 22333333332
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHH
Q 000176 1835 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEER 1907 (1924)
Q Consensus 1835 e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~ 1907 (1924)
.+.. -+++.+..+|++.++-..+++++...|+.+.|.+.+-..+..+....+- ..-+.++++..-.|..+-
T Consensus 220 ~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~-~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 220 PEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDG-EARKTLLELFEAFGPADP 290 (304)
T ss_pred CCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCc-HHHHHHHHHHHhcCCCCH
Confidence 2222 3455677788888888888888888888888887777777654443333 456677777666664333
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.18 Score=47.73 Aligned_cols=64 Identities=8% Similarity=0.056 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHh---CCCC-C-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 000176 1784 KVWLRRVQRLLKQ-QQEGVQAVVQRALLS---LPRH-K-HIKFISQTAILEFKNGVADRGRSMFEGILSE 1847 (1924)
Q Consensus 1784 ~vw~~~a~~l~~~-~~~~A~~l~~ral~~---~p~~-~-~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~ 1847 (1924)
.++..++..+... ++++|...|++|++. .+.. . ...++..+|.++...|++++|...|+++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3445555555555 555555555555543 2211 1 1456777888888888888888888888764
|
... |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.27 E-value=1.6 Score=54.45 Aligned_cols=183 Identities=12% Similarity=0.045 Sum_probs=103.0
Q ss_pred HcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChH
Q 000176 1687 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNK 1766 (1924)
Q Consensus 1687 ~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e 1766 (1924)
+..+..+-.+.+.+||+..|. -=-||+-|-..... +..+++++|++|++..... +.........|
T Consensus 180 RERnp~aRIkaA~eALei~pd--------CAdAYILLAEEeA~-Ti~Eae~l~rqAvkAgE~~---lg~s~~~~~~g--- 244 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPD--------CADAYILLAEEEAS-TIVEAEELLRQAVKAGEAS---LGKSQFLQHHG--- 244 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhh--------hhHHHhhccccccc-CHHHHHHHHHHHHHHHHHh---hchhhhhhccc---
Confidence 335566667788899976552 22355555443332 5788999999998764311 00000000000
Q ss_pred HHHHHHHHHHHhc-CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000176 1767 LADELLYKMIKKF-KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGI 1844 (1924)
Q Consensus 1767 ~A~~~fe~~lk~~-~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~a 1844 (1924)
..++....+. ....-+-.+++..+.+. +.++|.+.|..+++.+|...+..+...+...+...+.+.++..++.+-
T Consensus 245 ---~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 245 ---HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred ---chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 0011111111 00122234566666666 888888888888888887666778888888888888888888887774
Q ss_pred HHh-CCCCHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHhcCCCchhHH
Q 000176 1845 LSE-YPKRTDLWSIYLDQEIR-LGD---------------VDLIRGLFERAISLSLPPKKMK 1889 (1924)
Q Consensus 1845 L~~-~Pk~~dlw~~y~~le~k-~gd---------------~~~ar~lferal~~~~~pk~~k 1889 (1924)
=.. .|+...+-+.-+-+..+ .+| -..|.+.+.||+. ..|.-.+
T Consensus 322 dDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAve--fNPHVp~ 381 (539)
T PF04184_consen 322 DDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVE--FNPHVPK 381 (539)
T ss_pred ccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHH--hCCCCch
Confidence 211 34443332222222222 122 1236788899988 5555554
|
The molecular function of this protein is uncertain. |
| >TIGR02062 RNase_B exoribonuclease II | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.1 Score=69.64 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=55.2
Q ss_pred CCEEEEEEEEEecCeEEEEE-CCCeEEEecCCccCc--c-c--ccCc-------ccCCCCCCEEEEEEEEeeCCCCeEEE
Q 000176 762 NSVVHGYVCNIIETGCFVRF-LGRLTGFAPRSKAVD--G-Q--RADL-------SKTYYVGQSVRSNILDVNSETGRITL 828 (1924)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f-~~~l~Glv~~s~~s~--~-~--~~~~-------~~~f~~Gq~V~~~V~~id~~~~r~~l 828 (1924)
|....|.|..++++|+||++ .+++.||+|.+.+.+ + + ..+. ...|++||.|+++|.++|.+++++.+
T Consensus 558 ~~~f~g~I~~v~~~g~~v~l~~~~~~g~v~~~~l~~~~~~~~~~~~~~~~~l~g~~~~~lgd~v~V~v~~vd~~~~~i~~ 637 (639)
T TIGR02062 558 NTRFAAEIVDISRGGMRVRLLENGAIAFIPAAFLHANREELVCNQENGTVQIKGETVYKIGDVIDVVLTEVRMETRSIIA 637 (639)
T ss_pred CcEEEEEEEeeeCCcEEEEEecCceEEEEEhhhcCCCCcceEEcccccEEEEeccEEEecCCEEEEEEEEeccccCcEee
Confidence 44899999999999999999 568999999999865 2 1 1111 12599999999999999999998865
Q ss_pred e
Q 000176 829 S 829 (1924)
Q Consensus 829 S 829 (1924)
.
T Consensus 638 ~ 638 (639)
T TIGR02062 638 R 638 (639)
T ss_pred e
Confidence 3
|
This family consists of exoribonuclease II, the product of the rnb gene, as found in a number of gamma proteobacteria. In Escherichia coli, it is one of eight different exoribonucleases. It is involved in mRNA degradation and tRNA precursor end processing. |
| >PRK12329 nusA transcription elongation factor NusA; Provisional | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.15 Score=63.04 Aligned_cols=107 Identities=14% Similarity=0.232 Sum_probs=73.0
Q ss_pred CCCCCCEEEEEEEE--EeCCe-EEEEEccccccc----hh-hHhhhhcccCCCcEEEEEEEEEEcceEEEEEc---C--C
Q 000176 542 KFKVGAELVFRVLG--VKSKR-ITVTHKKTLVKS----KL-AILSSYAEATDRLITHGWITKIEKHGCFVRFY---N--G 608 (1924)
Q Consensus 542 ~f~vG~~vk~rVl~--v~~~~-l~lT~K~~Lv~~----~~-~~~~~~~~~~~G~~~~G~V~~i~~~G~~V~f~---~--~ 608 (1924)
.+++|+.|...|-- .+-+| ..-|.|..+... .. -+...|.+ ..|.++.|+|.++...+++|++. | +
T Consensus 102 ~~~iGD~v~~~v~~~~~~fgRiAAq~aKQvi~Qkire~ER~~i~~ef~~-~~GeIV~G~V~r~e~~~viv~l~~~~g~~~ 180 (449)
T PRK12329 102 EAQLGDTVVLDVTPEQEDFGRMAAIQTKQVLAQKLRDQQRKMIQEEFQD-LEDTVLTARVLRFERQSVIMAVSSGFGQPE 180 (449)
T ss_pred CCcCCCEEEEecCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcEEEEEEEEEcCCCEEEEecccCCCcc
Confidence 58999998765521 01111 122233322221 11 12333433 47999999999999999999983 4 3
Q ss_pred eEEEeeCcccCCCCCCCCCCCCCCCCEEEEEEEEEcCCC---CEEEEEEe
Q 000176 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS---RRINLSFM 655 (1924)
Q Consensus 609 v~g~lp~sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~---~ri~lS~k 655 (1924)
+.|+||.++.- |.+.|++|+.++|.|.+|+... -++.||..
T Consensus 181 ~EaiLP~~Eqi------p~E~y~~Gdrika~i~~V~~~~~kGpqIilSRt 224 (449)
T PRK12329 181 VEAELPKREQL------PNDNYRANATFKVFLKEVSEGPRRGPQLFVSRA 224 (449)
T ss_pred eEEEecHHHcC------CCCcCCCCCEEEEEEEEeecCCCCCCEEEEEcC
Confidence 99999999983 5678999999999999998763 46888863
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.08 E-value=2.6 Score=52.74 Aligned_cols=172 Identities=19% Similarity=0.178 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Q 000176 1733 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1810 (1924)
Q Consensus 1733 e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~ 1810 (1924)
++-.+..++|++.+|+= ..|.-|+. +.+....+|.++|+++++-- +..++. +......-+-.++.
T Consensus 185 ~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAg-----------E~~lg~s~~~~~~g~~~e~~~ 251 (539)
T PF04184_consen 185 QARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAG-----------EASLGKSQFLQHHGHFWEAWH 251 (539)
T ss_pred HHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHH-----------HHhhchhhhhhcccchhhhhh
Confidence 55566677777776643 55554442 34555678888888887632 111111 11111111111111
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1811 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR--TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1811 ~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~--~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
.-..+..+-+-..+|....+.|..++|..+|..+++.+|.. ..+...++..+...+.+..++.++.+.=. ..-|+.+
T Consensus 252 ~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD-i~lpkSA 330 (539)
T PF04184_consen 252 RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD-ISLPKSA 330 (539)
T ss_pred ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc-ccCCchH
Confidence 11122223455667888889999999999999999998863 34778888888999999999999999643 2234555
Q ss_pred HHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHH
Q 000176 1889 KFLFKKYLEYEKSVGE---------------EERIEYVKQKAMEY 1918 (1924)
Q Consensus 1889 k~lw~~yl~~E~~~G~---------------~~~~~~v~~rAle~ 1918 (1924)
-..|.+-+---+..|| ...|.+...||.++
T Consensus 331 ti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvef 375 (539)
T PF04184_consen 331 TICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEF 375 (539)
T ss_pred HHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHh
Confidence 4456665533333333 23355677787775
|
The molecular function of this protein is uncertain. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.02 E-value=3.3 Score=51.08 Aligned_cols=122 Identities=16% Similarity=0.127 Sum_probs=86.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CC---cchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh-cC
Q 000176 1672 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTI-NI---REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ-YC 1746 (1924)
Q Consensus 1672 P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i-~~---~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~-~~ 1746 (1924)
.+++....--.+++.-.|++.+|.+..-+.--.. +- ..+-.+-..|-.+.-+..+.+.| ..+...|.+|++ .+
T Consensus 237 ~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y--~~~~~~F~kAL~N~c 314 (696)
T KOG2471|consen 237 QDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCY--QASSVLFLKALRNSC 314 (696)
T ss_pred CCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhH--HHHHHHHHHHHHHHH
Confidence 3666666666777888899999888765432100 00 00111124455555556666754 778888999996 11
Q ss_pred --------C----------CHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 000176 1747 --------D----------PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK 1795 (1924)
Q Consensus 1747 --------~----------~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~ 1795 (1924)
+ .-++.+..+-.|...|+.-.|.+.|..+.+.|..+|.+|++++...+-
T Consensus 315 ~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 315 SQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 1 127788888899999999999999999999999999999999998763
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.98 E-value=2.5 Score=47.79 Aligned_cols=123 Identities=15% Similarity=0.163 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHh-CChHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHhc
Q 000176 1731 PEEAVVKVFQRALQYCDP-------KKVHLALLGLYERT-EQNKLADELLYKMIKKFKH------SCKVWLRRVQRLLKQ 1796 (1924)
Q Consensus 1731 ~~e~a~~vferAl~~~~~-------~~i~~~l~~i~~~~-gk~e~A~~~fe~~lk~~~~------~~~vw~~~a~~l~~~ 1796 (1924)
+.++|...+++|++..-. -+-|+.++.+|+.- .++++|...|+.+-.-|.. ..+.++..+++..+.
T Consensus 88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l 167 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL 167 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH
Confidence 457778888888776432 16688899999876 8899999999999987742 345677788877777
Q ss_pred -CHHHHHHHHHHHHHhCCCCChH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000176 1797 -QQEGVQAVVQRALLSLPRHKHI-----KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1853 (1924)
Q Consensus 1797 -~~~~A~~l~~ral~~~p~~~~~-----~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d 1853 (1924)
++.+|..+|++.....-++.-+ ..+.+-|..++-..|.=.++.-+|+-...+|...+
T Consensus 168 eqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 9999999999877654443211 23344444555567888888888888888998655
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.95 E-value=1.3 Score=52.14 Aligned_cols=151 Identities=15% Similarity=0.133 Sum_probs=113.8
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHH--HHHHHHHHcCCCC
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV--AYFNLENEYGNPP 1731 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWi--ayl~le~~~g~~~ 1731 (1924)
.+..+++...++++|...|.+..+|..--..+.-.|..+.-+..+++.+..-+ ++.. ...++ .|.--....|-|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn--~dlp-~~sYv~GmyaFgL~E~g~y- 191 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN--ADLP-CYSYVHGMYAFGLEECGIY- 191 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccC--CCCc-HHHHHHHHHHhhHHHhccc-
Confidence 34589999999999999999999998888888888988888999988875422 2221 11222 122122344534
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhc-CHHHHHHHH
Q 000176 1732 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHS----CKVWLRRVQRLLKQ-QQEGVQAVV 1805 (1924)
Q Consensus 1732 ~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~----~~vw~~~a~~l~~~-~~~~A~~l~ 1805 (1924)
+.|++..+|||+.++.+ =...+.+.+++..+++.++.+..++.-..+.++ ..-|...+.|++.. .++.|.++|
T Consensus 192 -~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 -DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred -hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 88999999999999876 566788899999999999999888766555433 33477888888888 999999999
Q ss_pred HHHH
Q 000176 1806 QRAL 1809 (1924)
Q Consensus 1806 ~ral 1809 (1924)
.+-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 8754
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.87 E-value=3.3 Score=51.50 Aligned_cols=190 Identities=14% Similarity=0.084 Sum_probs=126.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHh----cC
Q 000176 1672 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP-PEEAVVKVFQRALQ----YC 1746 (1924)
Q Consensus 1672 P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~-~~e~a~~vferAl~----~~ 1746 (1924)
+.++...+.++...-...|++++..+....... + ..-..-++.|...+... ..+. .-+.....=.-++. ..
T Consensus 68 ~~s~~~~y~~l~~lq~L~Elee~~~~~~~~~~~-~-~~~~~l~~~W~~Rl~~~--~~~~~~~~~il~~R~~~l~~~~~~~ 143 (352)
T PF02259_consen 68 SESYQRAYPSLVKLQQLVELEEIIELKSNLSQN-P-QDLKSLLKRWRSRLPNM--QDDFSVWEPILSLRRLVLSLILLPE 143 (352)
T ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHhhccc-H-HHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHhcccchh
Confidence 345555556666666667777777776333211 0 00111135677655432 2211 01222211111222 11
Q ss_pred CCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHH-hCCCC-----
Q 000176 1747 DPKKVHLALLGLYERTEQNKLADELLYKMIKKFK----HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL-SLPRH----- 1815 (1924)
Q Consensus 1747 ~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~----~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~-~~p~~----- 1815 (1924)
.....|+.++.+..+.|+++.|...+.++..... ..+.+.+.++.++... +..+|...++..+. .+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 1238999999999999999999999999887541 2678889999999999 99999999888887 22111
Q ss_pred --------------------------ChHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000176 1816 --------------------------KHIKFISQTAILEFKN------GVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1863 (1924)
Q Consensus 1816 --------------------------~~~~~~~~~A~le~~~------g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~ 1863 (1924)
...+++..+|.+.... +..+.+...|..++..+|.....|..++.++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 1136788888888877 78999999999999999999999999988876
Q ss_pred Hc
Q 000176 1864 RL 1865 (1924)
Q Consensus 1864 k~ 1865 (1924)
+.
T Consensus 304 ~~ 305 (352)
T PF02259_consen 304 KL 305 (352)
T ss_pred HH
Confidence 53
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.87 E-value=1.8 Score=49.45 Aligned_cols=132 Identities=11% Similarity=0.043 Sum_probs=101.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-------HHH
Q 000176 1679 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-------KKV 1751 (1924)
Q Consensus 1679 ~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~-------~~i 1751 (1924)
.-|+.++.-.+++.-....+...++..|.. +-.+--+++.+..+.| +++.|...|++.-+.+.. .-+
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~----~p~L~s~Lgr~~MQ~G--D~k~a~~yf~~vek~~~kL~~~q~~~~V 254 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQ----EPQLLSGLGRISMQIG--DIKTAEKYFQDVEKVTQKLDGLQGKIMV 254 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcc----cHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHhhhhccchhHHH
Confidence 456777778888888888888888755421 2357778888888999 778899889865543321 256
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC
Q 000176 1752 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1816 (1924)
Q Consensus 1752 ~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~ 1816 (1924)
+.+.+.+|.-+.++..|...|.+++...+.++..-.+.|.+++.. +...|...++.++...|...
T Consensus 255 ~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 255 LMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 777777888888888888888888888777777777777777777 88888888888888888763
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.86 E-value=1.6 Score=51.38 Aligned_cols=120 Identities=18% Similarity=0.178 Sum_probs=89.5
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
.++.+++...|..++...|.++.+-..|+.+++..|+.+.|..++........ ..+...-.+.+.+..+.... .
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~----~~~~~~l~a~i~ll~qaa~~--~ 220 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ----DKAAHGLQAQIELLEQAAAT--P 220 (304)
T ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch----hhHHHHHHHHHHHHHHHhcC--C
Confidence 45588999999999999999999999999999999999999988876553322 22222222355555554421 1
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcC
Q 000176 1734 AVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFK 1780 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~ 1780 (1924)
. -..+++.+..+|. .+.-+.++..|...|+++.|.+.+-.++++..
T Consensus 221 ~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 221 E-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred C-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 1 2346677777774 59999999999999999999998888887653
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.22 Score=58.16 Aligned_cols=106 Identities=17% Similarity=0.148 Sum_probs=88.7
Q ss_pred HHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000176 1788 RRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1866 (1924)
Q Consensus 1788 ~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~g 1866 (1924)
..++-|+++ +|++|...|.+++...|.+. -++.+-|..|++...+..|..-++-++..+-....+|+.-+..-...|
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~Np--V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNP--VYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCc--cchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 345667888 99999999999999998763 678888899999999999999999999887666667887777777889
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000176 1867 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1898 (1924)
Q Consensus 1867 d~~~ar~lferal~~~~~pk~~k~lw~~yl~~ 1898 (1924)
....|..-+|++|. +.|+.. .+-+.|.++
T Consensus 180 ~~~EAKkD~E~vL~--LEP~~~-ELkK~~a~i 208 (536)
T KOG4648|consen 180 NNMEAKKDCETVLA--LEPKNI-ELKKSLARI 208 (536)
T ss_pred hHHHHHHhHHHHHh--hCcccH-HHHHHHHHh
Confidence 99999999999999 888766 566666654
|
|
| >COG0557 VacB Exoribonuclease R [Transcription] | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.16 Score=68.87 Aligned_cols=74 Identities=28% Similarity=0.359 Sum_probs=62.8
Q ss_pred cCCCCCEEEEEEEEEeeceEEEEeCCC-cEEEEECccCCCcc-cCCC----------CccCCCCcEEEEEEEEEeCCCCE
Q 000176 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRK-LDAKVLLSNLSDGY-VESP----------EKEFPIGKLVAGRVLSVEPLSKR 1431 (1924)
Q Consensus 1364 ~lk~G~~v~G~V~~v~~~G~fV~l~~~-v~g~v~~selsd~~-~~~~----------~~~f~~G~~V~~kVl~vd~e~~r 1431 (1924)
.-.+|+...|+|.+++.+|+||.|... ++|+||++.|.+.| .-+. ...|+.|+.|+++|.+++...++
T Consensus 619 ~~~vg~~f~g~V~~v~~~g~~V~l~~~~ieglV~~s~L~~d~y~~~~~~~~l~~~~~~~~~~lgd~v~v~v~~v~~~~~~ 698 (706)
T COG0557 619 KKRVGEEFDGVVTGVTSFGFFVELPELGLEGLVHISSLPDDYYHFDERGQALVGEKSGKVYRLGDEVKVKVTSVDLDERK 698 (706)
T ss_pred HHhcCCEEEEEEEEEEeccEEEEecccccccceEcccCCCceeeeccccceeeccccccccccCCEEEEEEEEEcccccc
Confidence 356899999999999999999999765 99999999999643 2222 34689999999999999999999
Q ss_pred EEEEee
Q 000176 1432 VEVTLK 1437 (1924)
Q Consensus 1432 i~LSlk 1437 (1924)
|.+++-
T Consensus 699 i~~~~v 704 (706)
T COG0557 699 IDFELV 704 (706)
T ss_pred eEEEec
Confidence 988764
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.073 Score=41.83 Aligned_cols=32 Identities=9% Similarity=0.224 Sum_probs=21.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 000176 1841 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR 1872 (1924)
Q Consensus 1841 fe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar 1872 (1924)
|+++|+.+|++.+.|..|+.++...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56666666666666666666666666666664
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.62 E-value=2.3 Score=55.11 Aligned_cols=162 Identities=19% Similarity=0.148 Sum_probs=91.9
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHhcC-CCHH------HHHHHHHHHH-h---c-CHHHHHHHHHHHHHhCCCCChHHHH
Q 000176 1754 ALLGLYERTEQNKLADELLYKMIKKFK-HSCK------VWLRRVQRLL-K---Q-QQEGVQAVVQRALLSLPRHKHIKFI 1821 (1924)
Q Consensus 1754 ~l~~i~~~~gk~e~A~~~fe~~lk~~~-~~~~------vw~~~a~~l~-~---~-~~~~A~~l~~ral~~~p~~~~~~~~ 1821 (1924)
+++.+.-=.|+.+.+.+++.++.+... ..+- .|+.+...+. - . ..+.|.++++++.+.+|+. .-..
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s--~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNS--ALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCc--HHHH
Confidence 334444456777777777777665221 1111 1111111111 1 2 5677888888888888876 2444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH-
Q 000176 1822 SQTAILEFKNGVADRGRSMFEGILSEYPK---RTD-LWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL- 1896 (1924)
Q Consensus 1822 ~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk---~~d-lw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl- 1896 (1924)
..-|+++...|+++.|.+.|++++..... -.+ .+..++..+.-+.++++|...|.+.+..+ ...++ +..|+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka---~Y~Y~~ 346 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKA---FYAYLA 346 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHH---HHHHHH
Confidence 55567777888888888888887743221 111 24445556667788888888888877732 22333 22222
Q ss_pred -HHHHHcCCH-------HHHHHHHHHHHHHHHh
Q 000176 1897 -EYEKSVGEE-------ERIEYVKQKAMEYVES 1921 (1924)
Q Consensus 1897 -~~E~~~G~~-------~~~~~v~~rAle~v~~ 1921 (1924)
-.....|+. +++..+|.++-.+.++
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k 379 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPKLKQK 379 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 234445666 5566666666666554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.099 Score=39.92 Aligned_cols=30 Identities=30% Similarity=0.461 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000176 1833 VADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1863 (1924)
Q Consensus 1833 ~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~ 1863 (1924)
.+++||++||+.+...|. ...|..|+.+|.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHHhhc
Confidence 467888888888877765 567888887763
|
They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.25 E-value=2.3 Score=55.10 Aligned_cols=149 Identities=16% Similarity=0.114 Sum_probs=104.9
Q ss_pred CHHHHHHHHHHHHhcCCCHHH--------HHHHHHHH-H---HhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-C
Q 000176 1731 PEEAVVKVFQRALQYCDPKKV--------HLALLGLY-E---RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q 1797 (1924)
Q Consensus 1731 ~~e~a~~vferAl~~~~~~~i--------~~~l~~i~-~---~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~ 1797 (1924)
+-+...+.+.++.+..+-... |+..+..+ . .....+.|.++++.+.++||++.-..+..++++... +
T Consensus 203 dR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~ 282 (468)
T PF10300_consen 203 DRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGN 282 (468)
T ss_pred cHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC
Confidence 558888889998875543311 11111111 1 245678899999999999997666556667777667 9
Q ss_pred HHHHHHHHHHHHHhCCCCCh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHcCCH-----
Q 000176 1798 QEGVQAVVQRALLSLPRHKH--IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD--QEIRLGDV----- 1868 (1924)
Q Consensus 1798 ~~~A~~l~~ral~~~p~~~~--~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~--le~k~gd~----- 1868 (1924)
.++|.+.|++|+..-....+ .-.+..+|..+.-+.++++|...|.++++.+.- ...++.|+. .+...++.
T Consensus 283 ~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~ 361 (468)
T PF10300_consen 283 LEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKE 361 (468)
T ss_pred HHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhh
Confidence 99999999999853322221 245667777888899999999999999986554 355555544 44566777
Q ss_pred --HHHHHHHHHHHh
Q 000176 1869 --DLIRGLFERAIS 1880 (1924)
Q Consensus 1869 --~~ar~lferal~ 1880 (1924)
++|..+|.++-.
T Consensus 362 ~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 362 HKKEAEELFRKVPK 375 (468)
T ss_pred hHHHHHHHHHHHHH
Confidence 888999988776
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.22 Score=38.71 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000176 1819 KFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1851 (1924)
Q Consensus 1819 ~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~ 1851 (1924)
.+|..+|.+++..|++++|+..|+++++.+|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467777777777778888888888877777763
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=92.88 E-value=9.4 Score=47.32 Aligned_cols=146 Identities=14% Similarity=0.121 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHhc-----CCCHHHHHHHHHHHHH---hCChHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHhc-------
Q 000176 1733 EAVVKVFQRALQY-----CDPKKVHLALLGLYER---TEQNKLADELLYKMIK-KFKHSCKVWLRRVQRLLKQ------- 1796 (1924)
Q Consensus 1733 e~a~~vferAl~~-----~~~~~i~~~l~~i~~~---~gk~e~A~~~fe~~lk-~~~~~~~vw~~~a~~l~~~------- 1796 (1924)
+...++.+..-.. .....+-+.|+-.+.+ .|+.++|.+++..++. .-+.++++|...|..+.+.
T Consensus 158 damI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~ 237 (374)
T PF13281_consen 158 DAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFT 237 (374)
T ss_pred HHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCcc
Confidence 5555555544333 1123778888888888 9999999999999554 4567889998888877654
Q ss_pred ---CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHH----HHHHH---HHHH-H--hCCCCHHHHHH--HHHH
Q 000176 1797 ---QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR----GRSMF---EGIL-S--EYPKRTDLWSI--YLDQ 1861 (1924)
Q Consensus 1797 ---~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~----Ar~lf---e~aL-~--~~Pk~~dlw~~--y~~l 1861 (1924)
..++|...|.++....|.. -.-+++|.++.-.|.... .+.+- ..++ + ...+..+.|.. |+.+
T Consensus 238 d~~~ldkAi~~Y~kgFe~~~~~---Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea 314 (374)
T PF13281_consen 238 DRESLDKAIEWYRKGFEIEPDY---YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEA 314 (374)
T ss_pred chHHHHHHHHHHHHHHcCCccc---cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHH
Confidence 4678999999999888644 455677777776664322 23322 1111 1 12334556744 6666
Q ss_pred HHHcCCHHHHHHHHHHHHhc
Q 000176 1862 EIRLGDVDLIRGLFERAISL 1881 (1924)
Q Consensus 1862 e~k~gd~~~ar~lferal~~ 1881 (1924)
.+-.||+++|...+++++..
T Consensus 315 ~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 315 SVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHcCCHHHHHHHHHHHhhc
Confidence 66789999999999999983
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.18 Score=38.57 Aligned_cols=30 Identities=20% Similarity=0.410 Sum_probs=19.2
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000176 1764 QNKLADELLYKMIKKFKHSCKVWLRRVQRL 1793 (1924)
Q Consensus 1764 k~e~A~~~fe~~lk~~~~~~~vw~~~a~~l 1793 (1924)
+.+.|+.+|++++..++.++.+|..|+.|.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 455666666666666666666666666654
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.75 E-value=3.2 Score=48.19 Aligned_cols=93 Identities=11% Similarity=0.059 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHH----HHHHHhCCCC---------
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVV----QRALLSLPRH--------- 1815 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~----~ral~~~p~~--------- 1815 (1924)
...+..+-+..+.|++++|.+-|+.++..-.-.+-+-++.+...++. +++.|..+. +|.++..|.-
T Consensus 145 d~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegi 224 (459)
T KOG4340|consen 145 DGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGI 224 (459)
T ss_pred chhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccC
Confidence 44455556778899999999999999987666777777777777777 888887555 4555444421
Q ss_pred ----------Ch----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 000176 1816 ----------KH----IKFISQTAILEFKNGVADRGRSMFE 1842 (1924)
Q Consensus 1816 ----------~~----~~~~~~~A~le~~~g~~e~Ar~lfe 1842 (1924)
-| ++++..-+..|++.++++.|++-+-
T Consensus 225 DvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 225 DVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred chhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 00 2445555677889999999886543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.71 E-value=18 Score=41.74 Aligned_cols=130 Identities=12% Similarity=0.062 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCC----CCChHHHHHHH
Q 000176 1751 VHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP----RHKHIKFISQT 1824 (1924)
Q Consensus 1751 i~~~l~~i~~~~gk~e~A~~~fe~~lk~~-~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p----~~~~~~~~~~~ 1824 (1924)
+.+.|++++.-.+.|.-..++|...++++ +..+.+...++...++. +.+.|...|++.-+... .....-+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34455556666677777888888888877 56677777788877777 88888888875443321 12223455666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1825 AILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1825 A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
|.++.-.+++..|.-.|.+++..+|.+....+.-+-...-.|+...|....+.++.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66666667778888888888888887777666666666667777778888887776
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=91.30 E-value=3.8 Score=43.98 Aligned_cols=69 Identities=16% Similarity=0.190 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 000176 1852 TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1923 (1924)
Q Consensus 1852 ~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~~~ 1923 (1924)
..++..++..+...|+++.|..++++++. ..|-+- .+|...+......|+...|..+|+++...+...+
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E-~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~el 130 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALA--LDPYDE-EAYRLLMRALAAQGRRAEALRVYERYRRRLREEL 130 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-H-HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCH-HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 35677778888889999999999999999 565554 6899999999999999999999999999887654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.20 E-value=9.8 Score=43.52 Aligned_cols=127 Identities=12% Similarity=0.102 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHH------HHHHHHHhc-CHHHHHHHHHHHHHhCCCCC----hH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWL------RRVQRLLKQ-QQEGVQAVVQRALLSLPRHK----HI 1818 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~------~~a~~l~~~-~~~~A~~l~~ral~~~p~~~----~~ 1818 (1924)
.+|..-+..|..+.++++|...+.++.+-+..+...|. ..+.++... .+.++..+|++|....-.+- ..
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA 111 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA 111 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 67777788899999999999999999987765555443 222222233 78888888888876553221 11
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000176 1819 KFISQTAILEFKNGVADRGRSMFEGILSEYPK--R----TDLWSIYLDQEIRLGDVDLIRGLFER 1877 (1924)
Q Consensus 1819 ~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk--~----~dlw~~y~~le~k~gd~~~ar~lfer 1877 (1924)
.+.-+-|.+ .+.-+++.|..+|++++..... | .+++......+.+...+..|-..|.+
T Consensus 112 maleKAak~-lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 112 MALEKAAKA-LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred HHHHHHHHH-hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 233333433 3466899999999999876532 3 23566666667777777766655544
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.00 E-value=5.7 Score=45.82 Aligned_cols=189 Identities=12% Similarity=0.036 Sum_probs=117.7
Q ss_pred hcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhC-ChHHHHHHHHHHHHhcCC
Q 000176 1704 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTE-QNKLADELLYKMIKKFKH 1781 (1924)
Q Consensus 1704 ~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~g-k~e~A~~~fe~~lk~~~~ 1781 (1924)
.|.+.+++.. -++|+..-...++ .-+.|.++-+.++..+|.+ ++|.-.-.++...+ +..+-.+.+...+..++.
T Consensus 35 ~I~Yte~fr~---~m~YfRAI~~~~E-~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npK 110 (318)
T KOG0530|consen 35 KIAYTEDFRD---VMDYFRAIIAKNE-KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPK 110 (318)
T ss_pred EeeechhHHH---HHHHHHHHHhccc-cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcc
Confidence 3455555443 4666666555554 2477888888888888875 88887777665443 355566777777778888
Q ss_pred CHHHHHHHHHHHHhc-CHH-HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 000176 1782 SCKVWLRRVQRLLKQ-QQE-GVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYL 1859 (1924)
Q Consensus 1782 ~~~vw~~~a~~l~~~-~~~-~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~ 1859 (1924)
+..+|...--.+... ++. +-.+..+++|....++-| +|..--......++++.-.+.-..+|..+--+-.+|+.-.
T Consensus 111 NYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYH--aWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ry 188 (318)
T KOG0530|consen 111 NYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYH--AWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRY 188 (318)
T ss_pred chhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchh--hhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheee
Confidence 888887665544444 444 556777888876655544 5554444444556688888888888777665556776522
Q ss_pred HHHHH-cCCHH-----HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000176 1860 DQEIR-LGDVD-----LIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1901 (1924)
Q Consensus 1860 ~le~k-~gd~~-----~ar~lferal~~~~~pk~~k~lw~~yl~~E~~ 1901 (1924)
-.... .|-.+ +-.......|. +-|.+- .-|+-...+.+.
T Consensus 189 fvi~~~~~~~~~~~le~El~yt~~~I~--~vP~Ne-SaWnYL~G~l~~ 233 (318)
T KOG0530|consen 189 FVITNTKGVISKAELERELNYTKDKIL--LVPNNE-SAWNYLKGLLEL 233 (318)
T ss_pred EEEEeccCCccHHHHHHHHHHHHHHHH--hCCCCc-cHHHHHHHHHHh
Confidence 11111 22222 22234445555 566665 578887777665
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.94 E-value=1.6 Score=49.44 Aligned_cols=101 Identities=16% Similarity=0.011 Sum_probs=80.2
Q ss_pred HHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHH
Q 000176 1760 ERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGR 1838 (1924)
Q Consensus 1760 ~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar 1838 (1924)
....+|..|...|.+++...|..+..|.+.+..+++. +++.+.+-..||++..|+. +...+.++++..+...++.|.
T Consensus 21 f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~--vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL--VKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred cchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH--HHHHHHHHHHHHhhccccHHH
Confidence 3445678888899999988888889999999988888 8999999999999988776 577888888888888889999
Q ss_pred HHHHHHHHhC-----CCCHHHHHHHHHHH
Q 000176 1839 SMFEGILSEY-----PKRTDLWSIYLDQE 1862 (1924)
Q Consensus 1839 ~lfe~aL~~~-----Pk~~dlw~~y~~le 1862 (1924)
..+.++.... |.-.++|..+.+.-
T Consensus 99 ~~Lqra~sl~r~~~~~~~~di~~~L~~ak 127 (284)
T KOG4642|consen 99 KVLQRAYSLLREQPFTFGDDIPKALRDAK 127 (284)
T ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 9999885442 23356787766543
|
|
| >PRK10811 rne ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Probab=90.85 E-value=0.48 Score=63.26 Aligned_cols=64 Identities=20% Similarity=0.255 Sum_probs=52.4
Q ss_pred CCCEEEEEEEEEecCcCeEEEEeCCceEEEEecccccccccCCC---------CCCCCCCCEEEEEEEEEecc
Q 000176 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDP---------LSGYDEGQFVKCKVLEISRT 1322 (1924)
Q Consensus 1259 ~G~~v~g~V~~v~~~~~g~~V~l~~~~~G~v~~selsd~~~~~p---------~~~~~~G~~v~~~Vl~vd~~ 1322 (1924)
+|.|+.|+|.+|.++=.++||+||.+..||+|+.|+...+..++ ...+++||.|-|.|..-...
T Consensus 38 vGnIYkGkVenIvPGInAAFVDIG~gknGFL~L~Di~~~~f~~~~~~~~~~~i~~~Lk~GqeILVQV~KEa~g 110 (1068)
T PRK10811 38 KANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERG 110 (1068)
T ss_pred ccceEEEEEecccCCcceeEEEecCCcceEEEhhhccccccccccccccccccccccCCCCEEEEEEeecccC
Confidence 89999999999999877999999999999999999964332221 23578999999999875544
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=90.79 E-value=16 Score=49.23 Aligned_cols=179 Identities=15% Similarity=0.201 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHhCCh
Q 000176 1693 KARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-------KVHLALLGLYERTEQN 1765 (1924)
Q Consensus 1693 kAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-------~i~~~l~~i~~~~gk~ 1765 (1924)
.|...++-+++..+...+.| ..+.+.|..+...+.+ ..+.|+..++||+..+... .....++.+|.+.+..
T Consensus 39 ~ai~CL~~~~~~~~l~p~~e-a~~~l~la~iL~~eT~-n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQE-ARVRLRLASILLEETE-NLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHhccCCCCHHHH-HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 35555666665445444444 4678888888887765 4799999999998777431 4556677888888887
Q ss_pred HHHHHHHHHHHHhcCC-CHHHHHHHHHHH-----Hhc-CHHHHHHHHHHHHHhCC--CCChHHHHHHH--HHHHHHcCCH
Q 000176 1766 KLADELLYKMIKKFKH-SCKVWLRRVQRL-----LKQ-QQEGVQAVVQRALLSLP--RHKHIKFISQT--AILEFKNGVA 1834 (1924)
Q Consensus 1766 e~A~~~fe~~lk~~~~-~~~vw~~~a~~l-----~~~-~~~~A~~l~~ral~~~p--~~~~~~~~~~~--A~le~~~g~~ 1834 (1924)
. |.....+++..+.. ....|....+|+ +.. ++..|.+.++....... .+.++.+...+ +.+....+.+
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 7 99999999987754 334455444444 223 78889999999887763 33333333333 3344466778
Q ss_pred HHHHHHHHHHHHhC----------CCCHHHHHHHHHHHH--HcCCHHHHHHH
Q 000176 1835 DRGRSMFEGILSEY----------PKRTDLWSIYLDQEI--RLGDVDLIRGL 1874 (1924)
Q Consensus 1835 e~Ar~lfe~aL~~~----------Pk~~dlw~~y~~le~--k~gd~~~ar~l 1874 (1924)
+.+.+.++++.... +...++|....++.. ..|+++.+...
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~ 247 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQK 247 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888874432 224667888888665 56776665544
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=90.60 E-value=8 Score=49.57 Aligned_cols=145 Identities=14% Similarity=0.075 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 000176 1752 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1830 (1924)
Q Consensus 1752 ~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~ 1830 (1924)
|-..+.-|...|+++.|.++|.++-. | .....+|-+. +.+.|..+-+++ ......+.+|..-|+-.-+
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~~-~-------~dai~my~k~~kw~da~kla~e~---~~~e~t~~~yiakaedlde 836 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEADL-F-------KDAIDMYGKAGKWEDAFKLAEEC---HGPEATISLYIAKAEDLDE 836 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcch-h-------HHHHHHHhccccHHHHHHHHHHh---cCchhHHHHHHHhHHhHHh
Confidence 33344455666677777777665431 1 1222333334 555555444433 2222334556666666667
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 000176 1831 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEY 1910 (1924)
Q Consensus 1831 ~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~ 1910 (1924)
+|.+.+|..+|-.+ ..|+ .-++||-+.|..+....+.++ ..++.+....+.+..-.+..|+.+.++.
T Consensus 837 hgkf~eaeqlyiti--~~p~------~aiqmydk~~~~ddmirlv~k-----~h~d~l~dt~~~f~~e~e~~g~lkaae~ 903 (1636)
T KOG3616|consen 837 HGKFAEAEQLYITI--GEPD------KAIQMYDKHGLDDDMIRLVEK-----HHGDHLHDTHKHFAKELEAEGDLKAAEE 903 (1636)
T ss_pred hcchhhhhheeEEc--cCch------HHHHHHHhhCcchHHHHHHHH-----hChhhhhHHHHHHHHHHHhccChhHHHH
Confidence 77777776665432 1232 134566666666666666555 3444444556666655555677777777
Q ss_pred HHHHHHHHHH
Q 000176 1911 VKQKAMEYVE 1920 (1924)
Q Consensus 1911 v~~rAle~v~ 1920 (1924)
-|-.|-+|-.
T Consensus 904 ~flea~d~ka 913 (1636)
T KOG3616|consen 904 HFLEAGDFKA 913 (1636)
T ss_pred HHHhhhhHHH
Confidence 7777666543
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=90.55 E-value=0.4 Score=36.81 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000176 1820 FISQTAILEFKNGVADRGRSMFEGILSEYPKR 1851 (1924)
Q Consensus 1820 ~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~ 1851 (1924)
++...|..+++.|++++|+..|++++..+|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56778888888899999999999999999874
|
|
| >PRK10811 rne ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Probab=90.36 E-value=0.59 Score=62.47 Aligned_cols=73 Identities=14% Similarity=0.157 Sum_probs=55.0
Q ss_pred CCCCEEEEEEEEEee--ceEEEEeCCCcEEEEECccCCCcccCC---------CCccCCCCcEEEEEEEEEeCCCCEEEE
Q 000176 1366 SPNMIVQGYVKNVTS--KGCFIMLSRKLDAKVLLSNLSDGYVES---------PEKEFPIGKLVAGRVLSVEPLSKRVEV 1434 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~--~G~fV~l~~~v~g~v~~selsd~~~~~---------~~~~f~~G~~V~~kVl~vd~e~~ri~L 1434 (1924)
.+|.++.|+|.+|.+ .++||+||.+..||+++++....+..+ ....+++||.|-+.|..--..++...|
T Consensus 37 ~vGnIYkGkVenIvPGInAAFVDIG~gknGFL~L~Di~~~~f~~~~~~~~~~~i~~~Lk~GqeILVQV~KEa~gtKGp~L 116 (1068)
T PRK10811 37 KKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAAL 116 (1068)
T ss_pred CccceEEEEEecccCCcceeEEEecCCcceEEEhhhccccccccccccccccccccccCCCCEEEEEEeecccCCCCCce
Confidence 479999999999976 689999999999999999996543211 134588999999998775544444444
Q ss_pred Eeec
Q 000176 1435 TLKT 1438 (1924)
Q Consensus 1435 Slk~ 1438 (1924)
|.+-
T Consensus 117 Tt~I 120 (1068)
T PRK10811 117 TTFI 120 (1068)
T ss_pred eeeE
Confidence 4443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.97 E-value=0.68 Score=35.86 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC
Q 000176 1784 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1814 (1924)
Q Consensus 1784 ~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~ 1814 (1924)
.+|+.++..++.. ++++|+..|+++++..|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4555666666666 666666666666665554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.96 E-value=50 Score=49.20 Aligned_cols=230 Identities=16% Similarity=0.161 Sum_probs=146.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcc--hhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHH
Q 000176 1673 NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE--ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKK 1750 (1924)
Q Consensus 1673 ~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~e--e~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~ 1750 (1924)
++++-|..-+..--....+.+-.-.++|++-....+. ...-.+.|+.++.+....| ..+.|....-.|.... ..+
T Consensus 1627 ~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG--~~q~A~nall~A~e~r-~~~ 1703 (2382)
T KOG0890|consen 1627 NNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAG--HLQRAQNALLNAKESR-LPE 1703 (2382)
T ss_pred ccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcc--cHHHHHHHHHhhhhcc-cch
Confidence 3667887776654444445555556667765553321 1122379999999999899 5588887777776655 458
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhc-CC----------------CHHHHHHHHHHHHhc---CHHHHHHHHHHHHH
Q 000176 1751 VHLALLGLYERTEQNKLADELLYKMIKKF-KH----------------SCKVWLRRVQRLLKQ---QQEGVQAVVQRALL 1810 (1924)
Q Consensus 1751 i~~~l~~i~~~~gk~e~A~~~fe~~lk~~-~~----------------~~~vw~~~a~~l~~~---~~~~A~~l~~ral~ 1810 (1924)
++...|.++.+.|+...|..+++..+.++ ++ ..++-+.++.|.... ..++....|+.+.+
T Consensus 1704 i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~a 1783 (2382)
T KOG0890|consen 1704 IVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKA 1783 (2382)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999654 32 133455666666655 56777899999999
Q ss_pred hCCCCC--hHHHHHHHHHHHH--------HcCCHHH---HHHHHHHHHH--------hCCCCHHHHHHHHHHHH---Hc-
Q 000176 1811 SLPRHK--HIKFISQTAILEF--------KNGVADR---GRSMFEGILS--------EYPKRTDLWSIYLDQEI---RL- 1865 (1924)
Q Consensus 1811 ~~p~~~--~~~~~~~~A~le~--------~~g~~e~---Ar~lfe~aL~--------~~Pk~~dlw~~y~~le~---k~- 1865 (1924)
.+|... |..+-..|..++. +.|++.. |...|.+++. +-|+-..+|..|+.-.. +.
T Consensus 1784 il~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~~ek~~ 1863 (2382)
T KOG0890|consen 1784 ILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISSVEKAP 1863 (2382)
T ss_pred HcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcccccCC
Confidence 999542 3333333444433 4556666 4444456653 34666678888643322 22
Q ss_pred ------CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH--cCCHHHHH
Q 000176 1866 ------GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS--VGEEERIE 1909 (1924)
Q Consensus 1866 ------gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~--~G~~~~~~ 1909 (1924)
++....-.+.++++. .+||- .|+..|-++-.+ |-+.+-+.
T Consensus 1864 r~ei~s~~~~~in~~i~~~~~-~lp~Y---~f~ta~sQLlSRicH~~~dV~~ 1911 (2382)
T KOG0890|consen 1864 RGEIVSKNLKLINSLIEEALE-HLPTY---QFYTAYSQLLSRICHPNQDVAR 1911 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHHH-hCcch---HHHHHHHHHHHHHcCCchHHHH
Confidence 234444556666666 56652 356667666443 44444333
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.96 E-value=0.56 Score=36.51 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000176 1819 KFISQTAILEFKNGVADRGRSMFEGILSEYPK 1850 (1924)
Q Consensus 1819 ~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk 1850 (1924)
.+|...|..++..|+++.|...|+++|+.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666666666777777777777777766664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.84 E-value=8.3 Score=49.11 Aligned_cols=207 Identities=14% Similarity=0.168 Sum_probs=99.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHH-HHH--cCCCCHHHHHHHHHHHHhcCCCHHHHHH
Q 000176 1678 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL-ENE--YGNPPEEAVVKVFQRALQYCDPKKVHLA 1754 (1924)
Q Consensus 1678 W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~l-e~~--~g~~~~e~a~~vferAl~~~~~~~i~~~ 1754 (1924)
|..++.-.+..-+++-||+.|-|.-. . -|+.++.- +.+ .|+ ..+... ....+.+ ..-+..
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRd-l----------~~L~li~EL~~~k~rge-~P~~iL--lA~~~Ay---~gKF~E 650 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRD-L----------RYLELISELEERKKRGE-TPNDLL--LADVFAY---QGKFHE 650 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhc-c----------HHHHHHHHHHHHHhcCC-CchHHH--HHHHHHh---hhhHHH
Confidence 66666666677788888888887652 2 25544432 222 222 011111 0111111 123445
Q ss_pred HHHHHHHhCChHHHHHHHHHHHH-----hc-----CCC-HHHHHHHHHHHHhc-CHHHHHHHH------HHHHHhCCCCC
Q 000176 1755 LLGLYERTEQNKLADELLYKMIK-----KF-----KHS-CKVWLRRVQRLLKQ-QQEGVQAVV------QRALLSLPRHK 1816 (1924)
Q Consensus 1755 l~~i~~~~gk~e~A~~~fe~~lk-----~~-----~~~-~~vw~~~a~~l~~~-~~~~A~~l~------~ral~~~p~~~ 1816 (1924)
.+.++.++|.-.+|.++|..+-- .| ++. ..+....|.+.... ++..|.+++ ++|+....++.
T Consensus 651 AAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~g 730 (1081)
T KOG1538|consen 651 AAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHG 730 (1081)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhccc
Confidence 56677788888888888764321 11 111 22333445554444 555555443 23333333332
Q ss_pred hHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 000176 1817 HIKF---------------ISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1881 (1924)
Q Consensus 1817 ~~~~---------------~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~ 1881 (1924)
.+++ +...|+.+.+...+.-|-++|.++= | .....+++...++...|-.+-|+.
T Consensus 731 W~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~g-------D-~ksiVqlHve~~~W~eAFalAe~h--- 799 (1081)
T KOG1538|consen 731 WVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMG-------D-LKSLVQLHVETQRWDEAFALAEKH--- 799 (1081)
T ss_pred HHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhc-------c-HHHHhhheeecccchHhHhhhhhC---
Confidence 2222 2222222223333333333333320 0 122344555566777766666652
Q ss_pred CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000176 1882 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKA 1915 (1924)
Q Consensus 1882 ~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rA 1915 (1924)
| +-....+.-|.+|..+...+++|.+.|.||
T Consensus 800 --P-e~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 800 --P-EFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred --c-cccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 2 222256667777766666677777777665
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=89.78 E-value=10 Score=47.34 Aligned_cols=172 Identities=13% Similarity=0.096 Sum_probs=105.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHH---HHHcCCCCHHHHHHHH
Q 000176 1663 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL---ENEYGNPPEEAVVKVF 1739 (1924)
Q Consensus 1663 ~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~l---e~~~g~~~~e~a~~vf 1739 (1924)
..-.+|..+|...+..++.+..+.++|+.+.|.+..+|||-.+. ..|...... ....|+ ++=-|
T Consensus 28 ~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e--------~~~~~~F~~~~~~~~~g~-----~rL~~ 94 (360)
T PF04910_consen 28 ALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFE--------RAFHPSFSPFRSNLTSGN-----CRLDY 94 (360)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------HHHHHHhhhhhcccccCc-----cccCC
Confidence 34456789999999999999999999999999999999996443 133333211 111111 00000
Q ss_pred HHHHhcCCCH---HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC-CHHHHHHHHHHHH-hc-CHHHHHHHHHHHHHhCC
Q 000176 1740 QRALQYCDPK---KVHLALLGLYERTEQNKLADELLYKMIKKFKH-SCKVWLRRVQRLL-KQ-QQEGVQAVVQRALLSLP 1813 (1924)
Q Consensus 1740 erAl~~~~~~---~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~-~~~vw~~~a~~l~-~~-~~~~A~~l~~ral~~~p 1813 (1924)
.+ ..+. -..+.++..+.+.|-+.-|.+..+-+++..|. ++---..+++++. +. +++--.++++.......
T Consensus 95 ~~----~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~ 170 (360)
T PF04910_consen 95 RR----PENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCY 170 (360)
T ss_pred cc----ccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhh
Confidence 00 0111 23344555677788888888888888887765 5444444444443 33 66666666665544211
Q ss_pred CC---ChHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHhCCCC
Q 000176 1814 RH---KHIKFISQTAILEFKNGVA---------------DRGRSMFEGILSEYPKR 1851 (1924)
Q Consensus 1814 ~~---~~~~~~~~~A~le~~~g~~---------------e~Ar~lfe~aL~~~Pk~ 1851 (1924)
.. .-+.+-...|..++..++. +.|+..+.+|+..+|.-
T Consensus 171 ~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 171 RNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred hhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 11 0123445555555556665 89999999999988853
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.45 E-value=19 Score=42.93 Aligned_cols=148 Identities=11% Similarity=-0.014 Sum_probs=71.2
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCH--H--HHHHHHHHHHhc-CHHHHHHHHHHH
Q 000176 1735 VVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSC--K--VWLRRVQRLLKQ-QQEGVQAVVQRA 1808 (1924)
Q Consensus 1735 a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~--~--vw~~~a~~l~~~-~~~~A~~l~~ra 1808 (1924)
|-...++.++-.|.+ -.|..--..+...|+.+.-...+++.+-++.... . +.-.|+--+... -+++|++.-.||
T Consensus 122 a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ra 201 (491)
T KOG2610|consen 122 AAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRA 201 (491)
T ss_pred HHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhh
Confidence 344455555555543 2333333344555666666666666655432111 1 112333334444 666666666666
Q ss_pred HHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 000176 1809 LLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR----TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP 1884 (1924)
Q Consensus 1809 l~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~----~dlw~~y~~le~k~gd~~~ar~lferal~~~~~ 1884 (1924)
++.++.+ .-+-...|..+...|+..+|.+.++.-=...... .+-|...+-+++..+.++.|..+|+|-+-..+.
T Consensus 202 lqiN~~D--~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~k~l~ 279 (491)
T KOG2610|consen 202 LQINRFD--CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREIWKRLE 279 (491)
T ss_pred ccCCCcc--hHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHHHHhh
Confidence 6665543 1222333444445566666666655543222211 112334444555556666666666665543333
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=88.97 E-value=24 Score=43.89 Aligned_cols=167 Identities=11% Similarity=0.035 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHh---c-CHHHHHHHHHHHHHhCCCCChHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKK----FKHSCKVWLRRVQRLLK---Q-QQEGVQAVVQRALLSLPRHKHIKFI 1821 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~----~~~~~~vw~~~a~~l~~---~-~~~~A~~l~~ral~~~p~~~~~~~~ 1821 (1924)
.+-..+.-.|....+|+....+.+.+-.. ......+-..||-.+-+ . +.++|+.++..++...... .++++
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~-~~d~~ 220 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENP-DPDTL 220 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCC-ChHHH
Confidence 44455666688888899999999888776 45678888899999988 4 9999999999988776444 36888
Q ss_pred HHHHHHHH----H-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-H---HHHHHH---HHHHhcCCCc
Q 000176 1822 SQTAILEF----K-----NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV-D---LIRGLF---ERAISLSLPP 1885 (1924)
Q Consensus 1822 ~~~A~le~----~-----~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~-~---~ar~lf---eral~~~~~p 1885 (1924)
..+|..|- . ....++|...|.++....|+...-.+ ++-++.-.|.. + ++|.+- ...+..+-..
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN-~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGIN-AATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHH-HHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 88888764 1 11478999999999999876554444 44455555532 2 223322 1112112222
Q ss_pred hhHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHH
Q 000176 1886 KKMKFLFKKYLEY--EKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1886 k~~k~lw~~yl~~--E~~~G~~~~~~~v~~rAle~ 1918 (1924)
.++..+|..---+ ..-.||.+.+...+++|...
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3344677654444 44469999999999998754
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.92 E-value=9 Score=43.69 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1816 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~ 1816 (1924)
.++..|+..+...++|-++.+.....++.++.+.++++..|...... +.++|++-|+.+|...|.-.
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 57788888888889998999999999999999999999999988888 99999999999999887654
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=88.78 E-value=18 Score=45.20 Aligned_cols=137 Identities=15% Similarity=0.107 Sum_probs=83.2
Q ss_pred hcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcC--------------------------CCHHHHH---HHHHHH
Q 000176 1744 QYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFK--------------------------HSCKVWL---RRVQRL 1793 (1924)
Q Consensus 1744 ~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~--------------------------~~~~vw~---~~a~~l 1793 (1924)
+.+|-. ...++++.++.+.|+++.|.++.++++-.|. .+..+|. +|+..+
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L 113 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSL 113 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHH
Confidence 334443 7888899999999999999999999874331 2333443 556666
Q ss_pred Hhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-H----HHHHHHHHHHHHcCC
Q 000176 1794 LKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR-T----DLWSIYLDQEIRLGD 1867 (1924)
Q Consensus 1794 ~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~-~----dlw~~y~~le~k~gd 1867 (1924)
.+. -+..|.+..+-.+..+|..+..-+....=.+-.+.++++--..+++.......++ . .+-+..+-.++..++
T Consensus 114 ~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~ 193 (360)
T PF04910_consen 114 GRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEK 193 (360)
T ss_pred HhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcC
Confidence 666 7888888888888888875433333333333346666666666666554421111 0 122223333334444
Q ss_pred H---------------HHHHHHHHHHHh
Q 000176 1868 V---------------DLIRGLFERAIS 1880 (1924)
Q Consensus 1868 ~---------------~~ar~lferal~ 1880 (1924)
. +.|+..+.+|+.
T Consensus 194 ~~~~~~~~~~~~~~~~~~A~~~L~~Ai~ 221 (360)
T PF04910_consen 194 EESSQSSAQSGRSENSESADEALQKAIL 221 (360)
T ss_pred ccccccccccccccchhHHHHHHHHHHH
Confidence 4 778888888776
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.59 E-value=5.3 Score=48.33 Aligned_cols=121 Identities=15% Similarity=0.130 Sum_probs=64.2
Q ss_pred CCCCchHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hcCCcchhhHHHHHHHHHHHHHHc
Q 000176 1655 KDAPRTPDEFERLVRSSPNS----SFVWIKYMAFMLSMADVEKARSIAERALQ---TINIREENEKLNIWVAYFNLENEY 1727 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s----~~~W~~y~~~~~~~~e~dkAr~v~eraL~---~i~~~ee~ekl~lWiayl~le~~~ 1727 (1924)
++-..-++.|+.++..-..+ +.+|.++...|.-++++++|.+...--|. .+..+...- .-.-.+.|.....
T Consensus 31 gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEA--KssgNLGNtlKv~ 108 (639)
T KOG1130|consen 31 GDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEA--KSSGNLGNTLKVK 108 (639)
T ss_pred cchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccc--cccccccchhhhh
Confidence 44667788899998765443 44556666666667777777665433221 122111000 0111233344445
Q ss_pred CCCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHhCC-------------hHHHHHHHHHHHHhc
Q 000176 1728 GNPPEEAVVKVFQRALQYCDP-------KKVHLALLGLYERTEQ-------------NKLADELLYKMIKKF 1779 (1924)
Q Consensus 1728 g~~~~e~a~~vferAl~~~~~-------~~i~~~l~~i~~~~gk-------------~e~A~~~fe~~lk~~ 1779 (1924)
|.+ ++|.....|-+..... ...++.++++|...|+ .+++.+.|+.+++-|
T Consensus 109 G~f--deA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy 178 (639)
T KOG1130|consen 109 GAF--DEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFY 178 (639)
T ss_pred ccc--chHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHH
Confidence 544 5555555555543321 2678888888866554 245555555555443
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.58 E-value=2.2 Score=49.63 Aligned_cols=58 Identities=14% Similarity=0.233 Sum_probs=38.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHH
Q 000176 1830 KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMK 1889 (1924)
Q Consensus 1830 ~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k 1889 (1924)
+.|+.|+|.++|+.+|+..|.+.++...|..+.....++-.|-.+|-+|+. +.|-+.+
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt--isP~nse 185 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALT--ISPGNSE 185 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeee--eCCCchH
Confidence 456677777777777777777777777777766666666667777777666 5554443
|
|
| >KOG3409 consensus Exosomal 3'-5' exoribonuclease complex, subunit ski4 (Csl4) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.42 E-value=1.4 Score=46.96 Aligned_cols=70 Identities=20% Similarity=0.235 Sum_probs=52.9
Q ss_pred CCCEEEEEEEEEecCcCeEEEEe--------CCceEEEEeccccccccc--CCCCCCCCCCCEEEEEEEEEecccCCceE
Q 000176 1259 EGDIVGGRISKILSGVGGLVVQI--------GPHLYGRVHFTELKNICV--SDPLSGYDEGQFVKCKVLEISRTVRGTFH 1328 (1924)
Q Consensus 1259 ~G~~v~g~V~~v~~~~~g~~V~l--------~~~~~G~v~~selsd~~~--~~p~~~~~~G~~v~~~Vl~vd~~~~~~~~ 1328 (1924)
.|++|+++|.+++.. .+-|+| +...+|+|+..|+..--. .++...|.+|+.|.++|++... ...
T Consensus 68 ~G~IVtarV~~i~~r--fAkv~I~~V~d~~lk~~FrglirkqdvR~tEkdrv~v~ksFrPgDiVlAkVis~~~----~~~ 141 (193)
T KOG3409|consen 68 VGAIVTARVSRINLR--FAKVDILSVGDKPLKKSFRGLIRKQDVRATEKDRVKVYKSFRPGDIVLAKVISLGD----GSN 141 (193)
T ss_pred cCcEEEEEEEeeccc--eeeEEEEEEcCEEhhhhhcceeehhhccccccchhhhhhccCCCcEEEEEEeecCC----CCc
Confidence 899999999999987 666654 456889999998854221 2367789999999999999553 235
Q ss_pred EEEeee
Q 000176 1329 VELSLR 1334 (1924)
Q Consensus 1329 i~LSlr 1334 (1924)
..|+.-
T Consensus 142 y~LTtA 147 (193)
T KOG3409|consen 142 YLLTTA 147 (193)
T ss_pred EEEEEe
Confidence 666663
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.64 E-value=4.1 Score=46.33 Aligned_cols=100 Identities=14% Similarity=0.032 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000176 1797 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1876 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lfe 1876 (1924)
+++.|...|.|||...|.. +..|.+-|..+++..+++.+..-..++++..|+....-+.+.........++.|...+.
T Consensus 25 ~y~~ai~~y~raI~~nP~~--~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTV--ASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhchHHHHHHHHHhcCCCc--chhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 6899999999999999987 47899999999999999999999999999999988888888888888889999999999
Q ss_pred HHHhc--CCCchhHHHHHHHHHHH
Q 000176 1877 RAISL--SLPPKKMKFLFKKYLEY 1898 (1924)
Q Consensus 1877 ral~~--~~~pk~~k~lw~~yl~~ 1898 (1924)
||.++ ..++.....||+...+.
T Consensus 103 ra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 103 RAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHHhcCCCCCcchHHHHHHHH
Confidence 99652 12222333678777654
|
|
| >PRK11712 ribonuclease G; Provisional | Back alignment and domain information |
|---|
Probab=87.54 E-value=1.1 Score=57.65 Aligned_cols=62 Identities=23% Similarity=0.329 Sum_probs=49.3
Q ss_pred CCCEEEEEEEEEecCcCeEEEEeCCceEEEEecccccccc---cCC---------CCCCCCCCCEEEEEEEEEe
Q 000176 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC---VSD---------PLSGYDEGQFVKCKVLEIS 1320 (1924)
Q Consensus 1259 ~G~~v~g~V~~v~~~~~g~~V~l~~~~~G~v~~selsd~~---~~~---------p~~~~~~G~~v~~~Vl~vd 1320 (1924)
+|.++.|+|.+|.|+=.++||+||.+..||+|++|+.... ..+ ....+++||.|-|.|..-.
T Consensus 38 vGnIY~G~V~~v~pg~~AAFVdIG~~k~gFL~~~d~~~~~~~~~~~~~~~~~~~~i~~~l~~Gq~iLVQV~Ke~ 111 (489)
T PRK11712 38 VGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIVPHTECVAGEEQKQFVVRDISELVRQGQDIMVQVVKDP 111 (489)
T ss_pred cccEEEEEEeecCCCCceeEEeeCCCccEEEEhhhccchhhhcccccccccccccHHHhccCCCEEEEEEEeCC
Confidence 8999999999999987799999999999999999984211 000 1234789999999988744
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.34 E-value=1.1 Score=34.88 Aligned_cols=31 Identities=19% Similarity=0.139 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC
Q 000176 1784 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1814 (1924)
Q Consensus 1784 ~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~ 1814 (1924)
.+|+..|..++.. ++++|...|++||+..|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4566666666666 666666666666666553
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.50 E-value=1e+02 Score=38.95 Aligned_cols=219 Identities=13% Similarity=0.152 Sum_probs=129.8
Q ss_pred HcCCHHHHHHHHHHHHHhcCCcchhh---HHHHHHHHHH------HHHHcCCCCHHHHHHHHHHHHhcC---CCH-----
Q 000176 1687 SMADVEKARSIAERALQTINIREENE---KLNIWVAYFN------LENEYGNPPEEAVVKVFQRALQYC---DPK----- 1749 (1924)
Q Consensus 1687 ~~~e~dkAr~v~eraL~~i~~~ee~e---kl~lWiayl~------le~~~g~~~~e~a~~vferAl~~~---~~~----- 1749 (1924)
..|=+++|.+..++++.......+.+ +...-+..+- .....++ .++|.+-...+++.+ |..
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~--~~~al~~i~dm~~w~~r~p~~~Llr~ 364 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGD--YVEALEEIVDMKNWCTRFPTPLLLRA 364 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 45668899999999987543221222 1111122222 2334564 377766666665544 331
Q ss_pred ---HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHH----HHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh----
Q 000176 1750 ---KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWL----RRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH---- 1817 (1924)
Q Consensus 1750 ---~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~----~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~---- 1817 (1924)
.++.-++.+...-+.++.|...|..+.+.- ...++|. ++|-.|+++ +.+.-.++++. ..|.+.+
T Consensus 365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t-~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ss 440 (629)
T KOG2300|consen 365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLT-ESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSS 440 (629)
T ss_pred hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhh-hHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchH
Confidence 455555555566788999999999999864 3444443 455555554 44433333333 2333221
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHH----HHHcCCHHHHHHHHHHHHhc--CCC
Q 000176 1818 ----IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD---LWSIYLDQ----EIRLGDVDLIRGLFERAISL--SLP 1884 (1924)
Q Consensus 1818 ----~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d---lw~~y~~l----e~k~gd~~~ar~lferal~~--~~~ 1884 (1924)
..+++.+|-|.|.++++.+|+..+...|+.. +..| +-..+.-+ ....|+..++++...-++.. +++
T Consensus 441 q~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~ 519 (629)
T KOG2300|consen 441 QRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIP 519 (629)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCC
Confidence 2578888999999999999999999999865 3333 22222222 33568999999988888762 344
Q ss_pred chhHHHHHHHHH--HHHHHcCC--HHHHHHHHH
Q 000176 1885 PKKMKFLFKKYL--EYEKSVGE--EERIEYVKQ 1913 (1924)
Q Consensus 1885 pk~~k~lw~~yl--~~E~~~G~--~~~~~~v~~ 1913 (1924)
.-.. .+|.--+ ++....|+ .+...+.|.
T Consensus 520 Di~v-qLws~si~~~L~~a~g~~~~~~e~e~~~ 551 (629)
T KOG2300|consen 520 DIPV-QLWSSSILTDLYQALGEKGNEMENEAFR 551 (629)
T ss_pred CchH-HHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 3333 6776543 56666777 444444443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=86.42 E-value=10 Score=42.38 Aligned_cols=100 Identities=10% Similarity=0.065 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChH----HHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFK---HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI----KFI 1821 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~---~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~----~~~ 1821 (1924)
..|..++..|.+.|++++|.+.|.++..... +..++|+..+...+.. ++..+...+.+|-........+ .+-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 6778888889999999999999988776542 3456777777777777 7888877777776554332111 223
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 000176 1822 SQTAILEFKNGVADRGRSMFEGILSEYP 1849 (1924)
Q Consensus 1822 ~~~A~le~~~g~~e~Ar~lfe~aL~~~P 1849 (1924)
..-|..++..+++..|-.+|-.++..+.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 3333444567788888888877765554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=86.27 E-value=85 Score=37.82 Aligned_cols=203 Identities=15% Similarity=0.128 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCC-------cchh--hHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Q 000176 1675 SFVWIKYMAFMLSMA-DVEKARSIAERALQTINI-------REEN--EKLNIWVAYFNLENEYGNP-PEEAVVKVFQRAL 1743 (1924)
Q Consensus 1675 ~~~W~~y~~~~~~~~-e~dkAr~v~eraL~~i~~-------~ee~--ekl~lWiayl~le~~~g~~-~~e~a~~vferAl 1743 (1924)
+...++.+......+ +++.|...++||...++. ..+. -++.+-..+++.+..-+.+ ..++|..+.+-+-
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~ 114 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE 114 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 345566667777888 999999999999987532 1111 1234445555555555532 1234555555554
Q ss_pred hcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCC-CChH
Q 000176 1744 QYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ---QQEGVQAVVQRALLSLPR-HKHI 1818 (1924)
Q Consensus 1744 ~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~---~~~~A~~l~~ral~~~p~-~~~~ 1818 (1924)
.-.+. ..++.-.+.+..+.++.+.+.+.+.+|+..+......|......+... ....|...+...|..... ...
T Consensus 115 ~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~- 193 (278)
T PF08631_consen 115 SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSED- 193 (278)
T ss_pred HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChh-
Confidence 44454 377767777777789999999999999998764555555555555333 555666666555543222 211
Q ss_pred HHHHHHHHHHH----Hc-CC------HHHHHHHHHHHHHhC--CCC--------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000176 1819 KFISQTAILEF----KN-GV------ADRGRSMFEGILSEY--PKR--------TDLWSIYLDQEIRLGDVDLIRGLFER 1877 (1924)
Q Consensus 1819 ~~~~~~A~le~----~~-g~------~e~Ar~lfe~aL~~~--Pk~--------~dlw~~y~~le~k~gd~~~ar~lfer 1877 (1924)
. |..-+-+.. .. ++ .+....+++.+-+.. |=. .-+|.. +.-.++.++|+.|...|+-
T Consensus 194 ~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~-~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 194 Q-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNK-GKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred H-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHHHhhcCHHHHHHHHHH
Confidence 1 333332221 22 11 444445555433322 111 225775 6777899999999999998
Q ss_pred HHh
Q 000176 1878 AIS 1880 (1924)
Q Consensus 1878 al~ 1880 (1924)
+++
T Consensus 272 al~ 274 (278)
T PF08631_consen 272 ALH 274 (278)
T ss_pred HHH
Confidence 775
|
It is also involved in sporulation []. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=86.23 E-value=1.2 Score=34.06 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC
Q 000176 1751 VHLALLGLYERTEQNKLADELLYKMIKKFKHS 1782 (1924)
Q Consensus 1751 i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~ 1782 (1924)
.++.++.+|.+.|++++|.+.|+++++.||++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 46777788888888888888888888888754
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=86.12 E-value=28 Score=39.30 Aligned_cols=73 Identities=11% Similarity=-0.005 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--ChHHHHHHHHHHHHHcCCHHHH
Q 000176 1765 NKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRH--KHIKFISQTAILEFKNGVADRG 1837 (1924)
Q Consensus 1765 ~e~A~~~fe~~lk~~-~~~~~vw~~~a~~l~~~~~~~A~~l~~ral~~~p~~--~~~~~~~~~A~le~~~g~~e~A 1837 (1924)
-+.|+..|-.+-... -+.+.+-+.+|.||.+.+.++|..+|-++|...+.. -+++++..+|.++++.|+++.|
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 345666666665433 256777777777777667778888888887766544 2457777777777777777765
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.90 E-value=74 Score=43.34 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=18.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1856 SIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1856 ~~y~~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
..++.+|...|-+++...++|-++. +.+..|
T Consensus 1283 eeli~~Yq~rGyFeElIsl~Ea~LG--LERAHM 1313 (1666)
T KOG0985|consen 1283 EELIEYYQDRGYFEELISLLEAGLG--LERAHM 1313 (1666)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhhhc--hhHHHH
Confidence 3444455556667777777776665 444444
|
|
| >PF10246 MRP-S35: Mitochondrial ribosomal protein MRP-S35; InterPro: IPR019375 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=85.76 E-value=3.1 Score=40.84 Aligned_cols=60 Identities=23% Similarity=0.451 Sum_probs=49.1
Q ss_pred cccccccCCCCCeEEEEEEEEecCceEEEeCCCeEEeecCCCcccccccCCCCCCCCCCEEEEEEEEE
Q 000176 489 LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556 (1924)
Q Consensus 489 ~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hlsd~~~~~p~~~f~vG~~vk~rVl~v 556 (1924)
+++.+-+ ..|-+|.|+|..+...-+.+++++.+.++|+.... ..++|..|.+|..|+...
T Consensus 15 ~fi~lG~-~~gk~V~G~I~hvv~ddLYIDfG~KFhcVc~rp~~-------~~~~y~~G~rV~lrLkdl 74 (104)
T PF10246_consen 15 PFIQLGD-PEGKIVIGKIFHVVDDDLYIDFGGKFHCVCKRPAV-------NGEKYVRGSRVRLRLKDL 74 (104)
T ss_pred hhhhcCC-ccCCEEEEEEEEEecCceEEEeCCceeEEEecccc-------cccccccCCEEEEEECCH
Confidence 4566666 58999999999999999999999999999984432 235799999999988644
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of short mitochondrial ribosomal proteins, less than 200 amino acids long. MRP-S35 was proposed as a more appropriate name to this group of proteins []. |
| >PRK11712 ribonuclease G; Provisional | Back alignment and domain information |
|---|
Probab=85.68 E-value=1.6 Score=56.01 Aligned_cols=59 Identities=17% Similarity=0.159 Sum_probs=45.8
Q ss_pred CCCCEEEEEEEEEee--ceEEEEeCCCcEEEEECccCCCc--cc----------CCCCccCCCCcEEEEEEEE
Q 000176 1366 SPNMIVQGYVKNVTS--KGCFIMLSRKLDAKVLLSNLSDG--YV----------ESPEKEFPIGKLVAGRVLS 1424 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~--~G~fV~l~~~v~g~v~~selsd~--~~----------~~~~~~f~~G~~V~~kVl~ 1424 (1924)
-+|.++.|+|.+|.+ .++||+||.+-.||+|++|+... +. ....+.+++||.|-+.|+.
T Consensus 37 ~vGnIY~G~V~~v~pg~~AAFVdIG~~k~gFL~~~d~~~~~~~~~~~~~~~~~~~~i~~~l~~Gq~iLVQV~K 109 (489)
T PRK11712 37 IVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIVPHTECVAGEEQKQFVVRDISELVRQGQDIMVQVVK 109 (489)
T ss_pred ccccEEEEEEeecCCCCceeEEeeCCCccEEEEhhhccchhhhcccccccccccccHHHhccCCCEEEEEEEe
Confidence 489999999999977 58999999999999999998421 10 0112347889998888765
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.67 E-value=23 Score=52.43 Aligned_cols=179 Identities=16% Similarity=0.115 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc---CCC-----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHH
Q 000176 1715 NIWVAYFNLENEYGNPPEEAVVKVFQRALQY---CDP-----KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVW 1786 (1924)
Q Consensus 1715 ~lWiayl~le~~~g~~~~e~a~~vferAl~~---~~~-----~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw 1786 (1924)
.-|.+.+..-..+. ...+-.-.++|++-. .+. .+.|+.+|.+...+|+++.|....-.|... .-+.++
T Consensus 1630 d~W~~Rl~~tq~s~--~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~--r~~~i~ 1705 (2382)
T KOG0890|consen 1630 DNWKNRLERTQPSF--RIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES--RLPEIV 1705 (2382)
T ss_pred hhHHHHHHHhchhH--HHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc--ccchHH
Confidence 46887665533333 223333345555532 212 299999999999999999998888777654 378999
Q ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHhC-CC----------CC----hHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhC
Q 000176 1787 LRRVQRLLKQ-QQEGVQAVVQRALLSL-PR----------HK----HIKFISQTAILEFKNGV--ADRGRSMFEGILSEY 1848 (1924)
Q Consensus 1787 ~~~a~~l~~~-~~~~A~~l~~ral~~~-p~----------~~----~~~~~~~~A~le~~~g~--~e~Ar~lfe~aL~~~ 1848 (1924)
...|.+++.+ +...|..+++..+..+ |. .. +-.+...++.+....++ .+.-.+.|..+.+.+
T Consensus 1706 ~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail 1785 (2382)
T KOG0890|consen 1706 LERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAIL 1785 (2382)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHc
Confidence 9999999999 9999999999999543 33 10 11356667777666665 457788999999999
Q ss_pred CCCHH----HHHHHHHHHH--------HcCCHHH---HHHHHHHHHhcC---CCchhHHHHHHHHHHH
Q 000176 1849 PKRTD----LWSIYLDQEI--------RLGDVDL---IRGLFERAISLS---LPPKKMKFLFKKYLEY 1898 (1924)
Q Consensus 1849 Pk~~d----lw~~y~~le~--------k~gd~~~---ar~lferal~~~---~~pk~~k~lw~~yl~~ 1898 (1924)
|...+ +=..|..++. ++|++.. |...|.+++..+ +.. .|-.+...|+++
T Consensus 1786 ~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyq-smPRllTLWLD~ 1852 (2382)
T KOG0890|consen 1786 PEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLYQ-SMPRLLTLWLDI 1852 (2382)
T ss_pred ccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHHH-hhhHHHHHHHhh
Confidence 95433 2222333332 3466666 555567888632 221 233566777774
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.50 E-value=7.2 Score=48.34 Aligned_cols=146 Identities=13% Similarity=0.087 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHH-HhCCC------CChHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL-LSLPR------HKHIKFI 1821 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral-~~~p~------~~~~~~~ 1821 (1924)
++...-...|.+..+...+..-.+-+...-.+++...+...++++-. ++.+|..++-+.- ..-|. .-...+|
T Consensus 207 ~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~ 286 (696)
T KOG2471|consen 207 ELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFN 286 (696)
T ss_pred hhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheee
Confidence 44444445555555555554444444444456666666667777666 7777776665432 11111 1123578
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 000176 1822 SQTAILEFKNGVADRGRSMFEGILSEY------------------PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL 1883 (1924)
Q Consensus 1822 ~~~A~le~~~g~~e~Ar~lfe~aL~~~------------------Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~ 1883 (1924)
..++..+++.|.+.-+..+|.++|++. .++..+.+...-++...|++-.|-.+|..+++ .
T Consensus 287 NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~--v 364 (696)
T KOG2471|consen 287 NNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH--V 364 (696)
T ss_pred cCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH--H
Confidence 889999999999999999999999621 24567888888899999999999999999998 5
Q ss_pred CchhHHHHHHHHHHH
Q 000176 1884 PPKKMKFLFKKYLEY 1898 (1924)
Q Consensus 1884 ~pk~~k~lw~~yl~~ 1898 (1924)
...++ .+|.+.++.
T Consensus 365 fh~nP-rlWLRlAEc 378 (696)
T KOG2471|consen 365 FHRNP-RLWLRLAEC 378 (696)
T ss_pred HhcCc-HHHHHHHHH
Confidence 55555 699998874
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.49 E-value=21 Score=45.69 Aligned_cols=144 Identities=15% Similarity=0.120 Sum_probs=97.8
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------hcCCcchhhH-H--HHHHHHHHHHHH
Q 000176 1667 LVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ-----------------TINIREENEK-L--NIWVAYFNLENE 1726 (1924)
Q Consensus 1667 ll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~-----------------~i~~~ee~ek-l--~lWiayl~le~~ 1726 (1924)
+|..+|...+-.++.+.+...+|+.+-|+.+.+|||- ..||.....| + -+| .||....+
T Consensus 276 lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~-r~m~~l~~ 354 (665)
T KOG2422|consen 276 LLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALF-RYMQSLAQ 354 (665)
T ss_pred eeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHH-HHHHHHHh
Confidence 4456799999999999999999999999999888885 2222211112 1 223 45555567
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHhCChHHHHHHHHHHHHh--cCC--CHHHHHHHHHHHHhc-C-
Q 000176 1727 YGNPPEEAVVKVFQRALQYCDPK---KVHLALLGLYERTEQNKLADELLYKMIKK--FKH--SCKVWLRRVQRLLKQ-Q- 1797 (1924)
Q Consensus 1727 ~g~~~~e~a~~vferAl~~~~~~---~i~~~l~~i~~~~gk~e~A~~~fe~~lk~--~~~--~~~vw~~~a~~l~~~-~- 1797 (1924)
.| -..+|.+..+-.++..|.. -+.+.+=.+..++.+|+-..++++..-.- +.+ +...-+.+|.|++.. .
T Consensus 355 RG--C~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~ 432 (665)
T KOG2422|consen 355 RG--CWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEE 432 (665)
T ss_pred cC--ChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCCh
Confidence 77 4599999999999988763 22222222345677788888888776332 222 233345777788777 3
Q ss_pred --HHHHHHHHHHHHHhCC
Q 000176 1798 --QEGVQAVVQRALLSLP 1813 (1924)
Q Consensus 1798 --~~~A~~l~~ral~~~p 1813 (1924)
-+.|+.++.+|++.+|
T Consensus 433 ~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 433 DDRQSALNALLQALKHHP 450 (665)
T ss_pred hhHHHHHHHHHHHHHhCc
Confidence 6788999999999888
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.42 E-value=13 Score=45.22 Aligned_cols=129 Identities=15% Similarity=0.028 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHhCChHHHHHHHHHHH--Hhc-C---CCHHHHHHHHHHHHhc-CHHH
Q 000176 1733 EAVVKVFQRALQYCDPK-----KVHLALLGLYERTEQNKLADELLYKMI--KKF-K---HSCKVWLRRVQRLLKQ-QQEG 1800 (1924)
Q Consensus 1733 e~a~~vferAl~~~~~~-----~i~~~l~~i~~~~gk~e~A~~~fe~~l--k~~-~---~~~~vw~~~a~~l~~~-~~~~ 1800 (1924)
..-...|+.|++.--.. -+|.++++.|...++|++|.+....-+ .+. . ...+.--++++.+.-. .+++
T Consensus 34 raGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fde 113 (639)
T KOG1130|consen 34 RAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDE 113 (639)
T ss_pred hhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccch
Confidence 66677888888775432 788888888888888888887654322 111 0 1122223344444333 5555
Q ss_pred HHHHHHHHHHhCCC---C-ChHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000176 1801 VQAVVQRALLSLPR---H-KHIKFISQTAILEFKNGV-------------ADRGRSMFEGILSEYPKRTDLWSIYLDQ 1861 (1924)
Q Consensus 1801 A~~l~~ral~~~p~---~-~~~~~~~~~A~le~~~g~-------------~e~Ar~lfe~aL~~~Pk~~dlw~~y~~l 1861 (1924)
|.-...|-|..... + -...+++.+|..|...|. .+++++.|++++..|..+..+...+.|-
T Consensus 114 A~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr 191 (639)
T KOG1130|consen 114 ALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDR 191 (639)
T ss_pred HHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 55555444432110 0 012577888888876664 4677788888877766555554444443
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.94 E-value=15 Score=42.01 Aligned_cols=68 Identities=9% Similarity=0.023 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1819 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1819 ~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
.++.+|+|.+...|++=++.+-...+|+.+|.+..+++.-+......=+.++|+.-|..++. +.|.-+
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~--ldpsla 298 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE--LDPSLA 298 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh--cChhhH
Confidence 56777777777777777777777777888888777777777777776777778888888777 555444
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.93 E-value=18 Score=46.26 Aligned_cols=99 Identities=12% Similarity=-0.012 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHh-cC--CCchhHHHHHH
Q 000176 1819 KFISQTAILEFKNGVADRGRSMFEGILSEYPK-RTDLWSIYLDQEI-RLGDVDLIRGLFERAIS-LS--LPPKKMKFLFK 1893 (1924)
Q Consensus 1819 ~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk-~~dlw~~y~~le~-k~gd~~~ar~lferal~-~~--~~pk~~k~lw~ 1893 (1924)
.++..|.+...+.|=+..|.+...-+++..|. ++-....++|.+. +..+|+-...+|+..=. .+ ..|. +.|.
T Consensus 343 L~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN---~~yS 419 (665)
T KOG2422|consen 343 LALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPN---FGYS 419 (665)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCC---chHH
Confidence 34556666666777788888887777877776 5556666666554 66677777777776522 11 2221 1222
Q ss_pred HHH-HHHHHcC---CHHHHHHHHHHHHHHHH
Q 000176 1894 KYL-EYEKSVG---EEERIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1894 ~yl-~~E~~~G---~~~~~~~v~~rAle~v~ 1920 (1924)
.-+ .|..... +.+.+..++.+|+...-
T Consensus 420 ~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 420 LALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 222 2222222 25667777777765543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=84.90 E-value=1.6 Score=33.87 Aligned_cols=31 Identities=16% Similarity=0.088 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 000176 1819 KFISQTAILEFKNGVADRGRSMFEGILSEYP 1849 (1924)
Q Consensus 1819 ~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~P 1849 (1924)
.+|...|.++.+.|+++.|...|+++++..|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4677777777777777777777777777766
|
... |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=84.84 E-value=1.2e+02 Score=41.28 Aligned_cols=179 Identities=16% Similarity=0.123 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH----
Q 000176 1675 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL-NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK---- 1749 (1924)
Q Consensus 1675 ~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl-~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~---- 1749 (1924)
.++..+-+.++...|...+|.+.+-+|= |.+.. .+-..+ ...+-.+ .-..+..++++..|..
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA~-------d~~~aa~lle~~-~~~L~~~-----~~lsll~~~~~~lP~~~l~~ 413 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAAG-------DPEMAADLLEQL-EWQLFNG-----SELSLLLAWLKALPAELLAS 413 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhCC-------CHHHHHHHHHhh-hhhhhcc-----cchHHHHHHHHhCCHHHHhh
Confidence 6677777777777777777766554443 11111 111111 1111111 1244556666666542
Q ss_pred --HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC-----C---HHHHHH-HHHHHHhc-CHHHHHHHHHHHHHhCCCCCh
Q 000176 1750 --KVHLALLGLYERTEQNKLADELLYKMIKKFKH-----S---CKVWLR-RVQRLLKQ-QQEGVQAVVQRALLSLPRHKH 1817 (1924)
Q Consensus 1750 --~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~-----~---~~vw~~-~a~~l~~~-~~~~A~~l~~ral~~~p~~~~ 1817 (1924)
.+-+.++-......++.+|..+..++....+. . .--|.. .+.+.+.. +++.|.++.++++...|....
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 33344444455678899999999888765543 1 113443 33444445 999999999999999987532
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHH--HcC
Q 000176 1818 ---IKFISQTAILEFKNGVADRGRSMFEGILSEY----PKRTDLWSIYLDQEI--RLG 1866 (1924)
Q Consensus 1818 ---~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~----Pk~~dlw~~y~~le~--k~g 1866 (1924)
+.+++..+....-.|++++|+.+...+.+.. --...+|..+...++ .+|
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG 551 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG 551 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence 4577788888888999999999999887652 223457887755443 455
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=84.82 E-value=5.1 Score=44.72 Aligned_cols=100 Identities=15% Similarity=0.094 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHH
Q 000176 1676 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLAL 1755 (1924)
Q Consensus 1676 ~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l 1755 (1924)
..|..++.+|.+.|+++.|.+.|.|+...... ..-++++|+..+.+...++++ ..+.....+|-.......-|...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~--~~~~id~~l~~irv~i~~~d~--~~v~~~i~ka~~~~~~~~d~~~~ 112 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTS--PGHKIDMCLNVIRVAIFFGDW--SHVEKYIEKAESLIEKGGDWERR 112 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC--HHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHhccchHHHH
Confidence 56788999999999999999999999875543 334678999999999999954 88888888887765442112211
Q ss_pred -------HHHHHHhCChHHHHHHHHHHHHhc
Q 000176 1756 -------LGLYERTEQNKLADELLYKMIKKF 1779 (1924)
Q Consensus 1756 -------~~i~~~~gk~e~A~~~fe~~lk~~ 1779 (1924)
+-.+...++|..|.+.|-.+...|
T Consensus 113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 113 NRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 112234566666666666665555
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG3409 consensus Exosomal 3'-5' exoribonuclease complex, subunit ski4 (Csl4) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=84.80 E-value=4 Score=43.71 Aligned_cols=73 Identities=18% Similarity=0.241 Sum_probs=55.2
Q ss_pred CCCCCEEEEEEEEEECCeEEEEeC--------CCeEEEEEccccCCCCchhhhhccccCCCCEEEEEEEEEeCCCcEEEE
Q 000176 1161 VSIGQRVTGYVYKVDNEWALLTIS--------RHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1232 (1924)
Q Consensus 1161 ~~~G~~v~g~V~~v~~~~~~v~l~--------~~~~g~i~~~~~s~~~~~~~~~~~~f~vG~~v~~~V~~vd~~~~~l~L 1232 (1924)
...|++|++.|..+...++.++|. ...+|.|+..++-....+.-.+.+.|.+|+.|.++|++.....+. .|
T Consensus 66 P~~G~IVtarV~~i~~rfAkv~I~~V~d~~lk~~FrglirkqdvR~tEkdrv~v~ksFrPgDiVlAkVis~~~~~~y-~L 144 (193)
T KOG3409|consen 66 PFVGAIVTARVSRINLRFAKVDILSVGDKPLKKSFRGLIRKQDVRATEKDRVKVYKSFRPGDIVLAKVISLGDGSNY-LL 144 (193)
T ss_pred CccCcEEEEEEEeeccceeeEEEEEEcCEEhhhhhcceeehhhccccccchhhhhhccCCCcEEEEEEeecCCCCcE-EE
Confidence 378999999999999888777652 257899999887654444456778899999999999996554443 34
Q ss_pred Ee
Q 000176 1233 VL 1234 (1924)
Q Consensus 1233 S~ 1234 (1924)
+.
T Consensus 145 Tt 146 (193)
T KOG3409|consen 145 TT 146 (193)
T ss_pred EE
Confidence 43
|
|
| >PF08292 RNA_pol_Rbc25: RNA polymerase III subunit Rpc25; InterPro: IPR013238 Rpc25 is a strongly conserved subunit of RNA polymerase III and has homology to Rpa43 in RNA polymerase I, Rpb7 in RNA polymerase II and the archaeal RpoE subunit | Back alignment and domain information |
|---|
Probab=84.70 E-value=3.4 Score=42.87 Aligned_cols=59 Identities=24% Similarity=0.238 Sum_probs=41.9
Q ss_pred CCCeEEEEEEEEecCceEEEeCCCeEEeecCCCcccccccC-----------C--CCCCCCCCEEEEEEEEE
Q 000176 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-----------P--GKKFKVGAELVFRVLGV 556 (1924)
Q Consensus 498 ~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hlsd~~~~~-----------p--~~~f~vG~~vk~rVl~v 556 (1924)
+|+++.|+|++.++.|+.|+++=.-+-+||...|-+-..-+ . +-.|..|+.|++||..+
T Consensus 3 ~gEvl~g~I~~~~~~Gi~vslgFFddI~IP~~~L~~ps~fd~~~~~W~W~~~~~~~l~~d~ge~IRFRV~~~ 74 (122)
T PF08292_consen 3 VGEVLTGKIKSSTAEGIRVSLGFFDDIFIPPSLLPEPSRFDEEEQAWVWEYDEEQELFFDIGEEIRFRVESE 74 (122)
T ss_dssp TT-EEEEEEEEEETTEEEEEECCEEEEEEECCCC-TTEEEECCCTEEEEEESSSEEEEE-TT-EEEEEEEEE
T ss_pred CCCEEEEEEEecCCCcEEEEecccccEEECHHHCCCCCccCccCCEEEEECCCCceeEccCCCEEEEEEeEE
Confidence 69999999999999999999962236889998886421111 1 12358999999999988
|
Rpc25 is required for transcription initiation and is not essential for the elongating properties of RNA polymerase III [].; PDB: 2CKZ_D 3AYH_B. |
| >KOG3298 consensus DNA-directed RNA polymerase subunit E' [Transcription] | Back alignment and domain information |
|---|
Probab=84.25 E-value=3.6 Score=43.70 Aligned_cols=65 Identities=23% Similarity=0.419 Sum_probs=43.4
Q ss_pred CCcEEEEEEEEeecceEEEEEecCceeEEe--ec--cccCcc-------cccCcccccCCCcEEEEEEEEEecCCCee
Q 000176 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLC--HV--SELSED-------HVDNIETIYRAGEKVKVKILKVDKEKRRI 1523 (1924)
Q Consensus 1457 ~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~--h~--sels~~-------~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri 1523 (1924)
.|++++|.|+.|...|+|+++++ ++-++ |. .++.-. +..+-.+...+|..|+.+|+...-+...|
T Consensus 81 KGEVvdgvV~~Vnk~G~F~~~GP--l~~f~sshl~ppd~~f~p~~n~P~f~~~d~s~I~~~~~VR~kiigtr~~~~~i 156 (170)
T KOG3298|consen 81 KGEVVDGVVTKVNKMGVFARSGP--LEVFYSSHLKPPDYEFDPGENPPNFQTEDESVIQKGVEVRLKIIGTRVDETEI 156 (170)
T ss_pred CCcEEEEEEEEEeeeeEEEeccc--eEeeeecccCCCCcccCCCCCCCcccccccceeeeCcEEEEEEEEEEEeeeeE
Confidence 59999999999999999999976 33322 21 111111 11111236889999999999987555543
|
|
| >PF08292 RNA_pol_Rbc25: RNA polymerase III subunit Rpc25; InterPro: IPR013238 Rpc25 is a strongly conserved subunit of RNA polymerase III and has homology to Rpa43 in RNA polymerase I, Rpb7 in RNA polymerase II and the archaeal RpoE subunit | Back alignment and domain information |
|---|
Probab=84.21 E-value=3.2 Score=43.08 Aligned_cols=60 Identities=27% Similarity=0.211 Sum_probs=45.7
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCc--cc-----------CCCCccCCCCcEEEEEEEEEe
Q 000176 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG--YV-----------ESPEKEFPIGKLVAGRVLSVE 1426 (1924)
Q Consensus 1367 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~--~~-----------~~~~~~f~~G~~V~~kVl~vd 1426 (1924)
+|+++.|+|++.+..|+.|.|+---+-+||.+.|... |- .+-.-+|..|+.|+.||.++.
T Consensus 3 ~gEvl~g~I~~~~~~Gi~vslgFFddI~IP~~~L~~ps~fd~~~~~W~W~~~~~~~l~~d~ge~IRFRV~~~~ 75 (122)
T PF08292_consen 3 VGEVLTGKIKSSTAEGIRVSLGFFDDIFIPPSLLPEPSRFDEEEQAWVWEYDEEQELFFDIGEEIRFRVESEI 75 (122)
T ss_dssp TT-EEEEEEEEEETTEEEEEECCEEEEEEECCCC-TTEEEECCCTEEEEEESSSEEEEE-TT-EEEEEEEEEE
T ss_pred CCCEEEEEEEecCCCcEEEEecccccEEECHHHCCCCCccCccCCEEEEECCCCceeEccCCCEEEEEEeEEE
Confidence 6999999999999999999999878899999998842 21 222335679999999998876
|
Rpc25 is required for transcription initiation and is not essential for the elongating properties of RNA polymerase III [].; PDB: 2CKZ_D 3AYH_B. |
| >PRK12442 translation initiation factor IF-1; Reviewed | Back alignment and domain information |
|---|
Probab=83.34 E-value=4.7 Score=38.63 Aligned_cols=65 Identities=23% Similarity=0.193 Sum_probs=51.2
Q ss_pred EEEEEEEEeecceEEE-EEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEeccc
Q 000176 1460 IVIGQIKRVESYGLFI-TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529 (1924)
Q Consensus 1460 ~v~G~V~~v~~~GvFV-~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~ 1529 (1924)
.+.|.|+.+.+.+.|. .|++ +..=++|+|---.. -.-..-+||.|++.+-..|.+++||..-.|.
T Consensus 8 e~~G~V~e~Lp~~~frV~Len-G~~vla~isGKmR~----~rIrIl~GD~V~VE~spYDltkGRIiyR~~~ 73 (87)
T PRK12442 8 ELDGIVDEVLPDSRFRVTLEN-GVEVGAYASGRMRK----HRIRILAGDRVTLELSPYDLTKGRINFRHKD 73 (87)
T ss_pred EEEEEEEEECCCCEEEEEeCC-CCEEEEEeccceee----eeEEecCCCEEEEEECcccCCceeEEEEecC
Confidence 3789999999988885 7876 88889998752221 1223578999999999999999999987764
|
|
| >KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.34 E-value=26 Score=41.87 Aligned_cols=115 Identities=14% Similarity=0.099 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhCChHHHHHHHHHHHHhc---CCCHHHH---HHHHHHHHhc-----CH
Q 000176 1733 EAVVKVFQRALQYCDP---KKVHLALLGLYERTEQNKLADELLYKMIKKF---KHSCKVW---LRRVQRLLKQ-----QQ 1798 (1924)
Q Consensus 1733 e~a~~vferAl~~~~~---~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~---~~~~~vw---~~~a~~l~~~-----~~ 1798 (1924)
++..+..+.|-+.... .++|.+.+.+|.+.|+.+.|.+.|.+...+- +...++. ++++-|+..+ ..
T Consensus 85 ~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~i 164 (393)
T KOG0687|consen 85 KELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESI 164 (393)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHH
Confidence 4444455555554333 3899999999999999999999998877653 2233332 3556666555 77
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000176 1799 EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1850 (1924)
Q Consensus 1799 ~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk 1850 (1924)
++|..++++.-.=...+ .+-...|.+.+.-.++..|-.+|-.++..+..
T Consensus 165 ekak~liE~GgDWeRrN---RlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 165 EKAKSLIEEGGDWERRN---RLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred HHHHHHHHhCCChhhhh---hHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 88888888774322112 34555566667778899999999888876643
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.32 E-value=13 Score=44.54 Aligned_cols=98 Identities=16% Similarity=-0.021 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 000176 1751 VHLALLGLYERTEQNKLADELLYKMIKKFKHS----CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1825 (1924)
Q Consensus 1751 i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~----~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A 1825 (1924)
-|-.=++-|.+..+|..|.+.|...++.-..+ ..+|.+.+...+.. ++..|..-..+|++..|.+ ++++++=|
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h--~Ka~~R~A 160 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH--LKAYIRGA 160 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch--hhhhhhhh
Confidence 45566899999999999999999999876433 44577777777766 8999999999999999877 68999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC
Q 000176 1826 ILEFKNGVADRGRSMFEGILSEYPK 1850 (1924)
Q Consensus 1826 ~le~~~g~~e~Ar~lfe~aL~~~Pk 1850 (1924)
+.+++...++.|..+.+..+..+-.
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 9999999999999999998766543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.28 E-value=43 Score=45.37 Aligned_cols=125 Identities=11% Similarity=0.141 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHH---HHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000176 1752 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWL---RRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1827 (1924)
Q Consensus 1752 ~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~---~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~l 1827 (1924)
|...+++.+++|-+.+|++.|...-..-+.-..... .|..-++.. .++.+.+.+..++..+- +..+++..+.|.=
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~Ni-rqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANI-RQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HhhhHHHHHHHHH
Confidence 888999999999999999888765543221111111 122223333 78888888888887653 3346777777766
Q ss_pred HHHcCCHHHHHHHHHHH------------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000176 1828 EFKNGVADRGRSMFEGI------------LSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1877 (1924)
Q Consensus 1828 e~~~g~~e~Ar~lfe~a------------L~~~Pk~~dlw~~y~~le~k~gd~~~ar~lfer 1877 (1924)
|..+--.+.-.++||.. +-+...+.++.+.|++...+.|++.++..+...
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 65444455666666653 445567889999999999999988877665543
|
|
| >KOG3298 consensus DNA-directed RNA polymerase subunit E' [Transcription] | Back alignment and domain information |
|---|
Probab=82.26 E-value=7.2 Score=41.57 Aligned_cols=60 Identities=20% Similarity=0.202 Sum_probs=40.3
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcc--c--CC-------CCccCCCCcEEEEEEEEEeC
Q 000176 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY--V--ES-------PEKEFPIGKLVAGRVLSVEP 1427 (1924)
Q Consensus 1367 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~--~--~~-------~~~~f~~G~~V~~kVl~vd~ 1427 (1924)
.|++|.|.|+.+++.|+|++.|+ ++.++.---...+| . ++ -.+...+|..|+.+|+.+.-
T Consensus 81 KGEVvdgvV~~Vnk~G~F~~~GP-l~~f~sshl~ppd~~f~p~~n~P~f~~~d~s~I~~~~~VR~kiigtr~ 151 (170)
T KOG3298|consen 81 KGEVVDGVVTKVNKMGVFARSGP-LEVFYSSHLKPPDYEFDPGENPPNFQTEDESVIQKGVEVRLKIIGTRV 151 (170)
T ss_pred CCcEEEEEEEEEeeeeEEEeccc-eEeeeecccCCCCcccCCCCCCCcccccccceeeeCcEEEEEEEEEEE
Confidence 69999999999999999999996 45554432222221 1 12 11245678888888877653
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=82.07 E-value=1.6e+02 Score=37.57 Aligned_cols=20 Identities=15% Similarity=0.072 Sum_probs=10.5
Q ss_pred CCHHHHHHHHHHHHHhCCCC
Q 000176 1832 GVADRGRSMFEGILSEYPKR 1851 (1924)
Q Consensus 1832 g~~e~Ar~lfe~aL~~~Pk~ 1851 (1924)
.++.+|..++..+|..+.++
T Consensus 219 eN~~eai~Ilk~il~~d~k~ 238 (711)
T COG1747 219 ENWTEAIRILKHILEHDEKD 238 (711)
T ss_pred cCHHHHHHHHHHHhhhcchh
Confidence 35555555555555554443
|
|
| >KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.61 E-value=72 Score=38.32 Aligned_cols=176 Identities=12% Similarity=0.050 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHcCCC--CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000176 1716 IWVAYFNLENEYGNP--PEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1793 (1924)
Q Consensus 1716 lWiayl~le~~~g~~--~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l 1793 (1924)
+-++-..+.+.++.. ...++++-+.++++..+-...|..++. ++.+.--..++++|++.+..
T Consensus 19 le~sq~~FlLt~p~~~~~~~~~~e~l~~~Ird~~Map~Ye~lce----~~~i~~D~~~l~~m~~~nee------------ 82 (393)
T KOG0687|consen 19 LELSQLRFLLTHPEVLGQKAAAREKLLAAIRDEDMAPLYEYLCE----SLVIKLDQDLLNSMKKANEE------------ 82 (393)
T ss_pred hhHHHHHHHHcCccccCcCHHHHHHHHHHHHhcccchHHHHHHh----hcceeccHHHHHHHHHhhHH------------
Confidence 344555555665532 135677777777766554444444433 23333333444444443210
Q ss_pred HhcCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH-------
Q 000176 1794 LKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE---YPKRTDLWSIYLDQEI------- 1863 (1924)
Q Consensus 1794 ~~~~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~---~Pk~~dlw~~y~~le~------- 1863 (1924)
+.++-.+..+.|-+.+....-.++|.+.|.++.+-||.+.|.+.|.+.... ..-+.|+....+++-+
T Consensus 83 ---ki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~l 159 (393)
T KOG0687|consen 83 ---KIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDL 159 (393)
T ss_pred ---HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHH
Confidence 344444455555555555555688999999999999999998888777653 3445666554444433
Q ss_pred HcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH-HHHcCCHHHHHHHHHHH
Q 000176 1864 RLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEY-EKSVGEEERIEYVKQKA 1915 (1924)
Q Consensus 1864 k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~-E~~~G~~~~~~~v~~rA 1915 (1924)
-...++.|..++|+.-. +..++- ++.|-.+ -....++++|..+|-.+
T Consensus 160 V~~~iekak~liE~GgD--WeRrNR---lKvY~Gly~msvR~Fk~Aa~Lfld~ 207 (393)
T KOG0687|consen 160 VTESIEKAKSLIEEGGD--WERRNR---LKVYQGLYCMSVRNFKEAADLFLDS 207 (393)
T ss_pred HHHHHHHHHHHHHhCCC--hhhhhh---HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33456677777777554 554433 4444433 23335566666655444
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=81.45 E-value=2.2e+02 Score=38.90 Aligned_cols=237 Identities=14% Similarity=0.015 Sum_probs=133.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcc---hhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-
Q 000176 1674 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE---ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK- 1749 (1924)
Q Consensus 1674 s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~e---e~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~- 1749 (1924)
++.+-+.|+=....+..+++|..+..++....+... ...-+--|.++-..-..+.. +.+.|.++.++|+..-|..
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~-~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRG-DPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccccc
Confidence 444555555555677888888888888877666421 11112346666555443322 5699999999999988764
Q ss_pred -----HHHHHHHHHHHHhCChHHHHHHHHHHHHh---c-CCCHHHHHHHHH--HHHhc-C--HHHHHHHH----HHHHHh
Q 000176 1750 -----KVHLALLGLYERTEQNKLADELLYKMIKK---F-KHSCKVWLRRVQ--RLLKQ-Q--QEGVQAVV----QRALLS 1811 (1924)
Q Consensus 1750 -----~i~~~l~~i~~~~gk~e~A~~~fe~~lk~---~-~~~~~vw~~~a~--~l~~~-~--~~~A~~l~----~ral~~ 1811 (1924)
-.+...+.+..-.|++.+|+.+...+.+. + .....+|..+.+ ++..+ + +......| ++-+..
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q 572 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ 572 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 45556666777789999999988877654 2 234566776633 33333 1 22222222 122222
Q ss_pred CCCCCh-HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 000176 1812 LPRHKH-IKFISQTAILEF-KNGVADRGRSMFEGILSEYPKRTDLWS---IYLDQEIRLGDVDLIRGLFERAISLSLPPK 1886 (1924)
Q Consensus 1812 ~p~~~~-~~~~~~~A~le~-~~g~~e~Ar~lfe~aL~~~Pk~~dlw~---~y~~le~k~gd~~~ar~lferal~~~~~pk 1886 (1924)
.|.+.. +.++...+..++ -.+...+|+.-++-.....|...+.|. .++.+++..|+.++|.....+....-..+.
T Consensus 573 ~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 573 KPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 222210 112222222222 234455666666666555666666554 467778889999999988887776322222
Q ss_pred hHHHHHHHHHH-----HHHHcCCHHHHHHHH
Q 000176 1887 KMKFLFKKYLE-----YEKSVGEEERIEYVK 1912 (1924)
Q Consensus 1887 ~~k~lw~~yl~-----~E~~~G~~~~~~~v~ 1912 (1924)
...+|...+. +=...||.+.+..-.
T Consensus 653 -~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l 682 (894)
T COG2909 653 -YHVDYLAAAYKVKLILWLAQGDKELAAEWL 682 (894)
T ss_pred -CCchHHHHHHHhhHHHhcccCCHHHHHHHH
Confidence 1134444332 223357766554433
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.17 E-value=9 Score=45.57 Aligned_cols=81 Identities=16% Similarity=0.071 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCchhHHHHHHH
Q 000176 1818 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS---LSLPPKKMKFLFKK 1894 (1924)
Q Consensus 1818 ~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~---~~~~pk~~k~lw~~ 1894 (1924)
+.++.+++..+...|+++.+.+.+++++...|.+..+|...+..+.+.|+...|+..|+++-. ..+.......+|+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 577888888888999999999999999999999999999999999999999999999988655 23444445567888
Q ss_pred HHHH
Q 000176 1895 YLEY 1898 (1924)
Q Consensus 1895 yl~~ 1898 (1924)
|.+.
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 8766
|
|
| >PF10246 MRP-S35: Mitochondrial ribosomal protein MRP-S35; InterPro: IPR019375 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=81.17 E-value=4.9 Score=39.55 Aligned_cols=54 Identities=13% Similarity=0.082 Sum_probs=47.1
Q ss_pred CCCcEEEEEEEEEeeeEEEEEecCCcceEEEEeeecCCCCCCCcccccCCCeEEEEEeccC
Q 000176 969 GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP 1029 (1924)
Q Consensus 969 ~~G~~v~g~V~~i~~~~v~vsl~~~~~~~g~~~~~~~~~~~~~~~~f~~Gq~v~~~V~~~~ 1029 (1924)
..|-.|.|.|.+|-++-++++| |+++-++|+....+ .+.|..|..|..++...+
T Consensus 22 ~~gk~V~G~I~hvv~ddLYIDf--G~KFhcVc~rp~~~-----~~~y~~G~rV~lrLkdlE 75 (104)
T PF10246_consen 22 PEGKIVIGKIFHVVDDDLYIDF--GGKFHCVCKRPAVN-----GEKYVRGSRVRLRLKDLE 75 (104)
T ss_pred ccCCEEEEEEEEEecCceEEEe--CCceeEEEeccccc-----ccccccCCEEEEEECCHh
Confidence 3688999999999999999999 99999999876554 467999999999988764
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of short mitochondrial ribosomal proteins, less than 200 amino acids long. MRP-S35 was proposed as a more appropriate name to this group of proteins []. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.15 E-value=2.8 Score=50.03 Aligned_cols=125 Identities=13% Similarity=0.086 Sum_probs=90.9
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHH
Q 000176 1647 AAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE 1726 (1924)
Q Consensus 1647 ~~e~~~~~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~ 1726 (1924)
+.-+++-++...++++.|.+++..+|.+..++-.-+..++.+.....|..-+.+|+...+.+. +-.-|-.|.+ ..
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa---~~ykfrg~A~--rl 194 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA---KGYKFRGYAE--RL 194 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccc---cccchhhHHH--HH
Confidence 344456567799999999999999999999999999999999999999999999996544322 2345766665 45
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHh
Q 000176 1727 YGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK 1778 (1924)
Q Consensus 1727 ~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~ 1778 (1924)
++++ +.|...|..||+..-...+-..+-.+.-+.++.++-+..|++....
T Consensus 195 lg~~--e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~e 244 (377)
T KOG1308|consen 195 LGNW--EEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERAREE 244 (377)
T ss_pred hhch--HHHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHHHH
Confidence 5655 8889999999987654433333334555556666666666666543
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.02 E-value=1.2 Score=52.93 Aligned_cols=140 Identities=13% Similarity=-0.009 Sum_probs=102.5
Q ss_pred HhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHH
Q 000176 1761 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRS 1839 (1924)
Q Consensus 1761 ~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~ 1839 (1924)
..|.++.|.+.|.+++...+.+..+|...+..+++. +...|..-|..|+.++|+...-.-|..||. ..+|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~--rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAE--RLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHH--HHhhchHHHHH
Confidence 356799999999999999999999999999999999 999999999999999998754344555554 45799999999
Q ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHH
Q 000176 1840 MFEGILSEY-PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE 1906 (1924)
Q Consensus 1840 lfe~aL~~~-Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~ 1906 (1924)
.|+.+.+.. -.....|..-. .-..+..+.-|..++|+.....-+.+. =-.+|..+++..-+.+
T Consensus 204 dl~~a~kld~dE~~~a~lKeV--~p~a~ki~e~~~k~er~~~e~~~~~r~--er~r~~r~~~e~~~~e 267 (377)
T KOG1308|consen 204 DLALACKLDYDEANSATLKEV--FPNAGKIEEHRRKYERAREEREIKERV--ERVRYAREPEEMANPE 267 (377)
T ss_pred HHHHHHhccccHHHHHHHHHh--ccchhhhhhchhHHHHHHHHhcccccc--cccccccchhhhcChh
Confidence 999999874 34556777643 334566677788888887732221222 1334445544444443
|
|
| >COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.87 E-value=1.2e+02 Score=35.88 Aligned_cols=250 Identities=15% Similarity=0.112 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchh
Q 000176 1632 HAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREEN 1711 (1924)
Q Consensus 1632 ~~k~~~k~~~e~~~~~~e~~~~~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ 1711 (1924)
+++++.=++..+.+++.|+.. ..-.-+.+|.+.+.||.|.++.+.+.+...|.+...-. ..
T Consensus 89 kkneeki~Elde~i~~~eedn-----------------gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~s--tg 149 (412)
T COG5187 89 KKNEEKIEELDERIREKEEDN-----------------GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMS--TG 149 (412)
T ss_pred HhhHHHHHHHHHHHHHHhhcc-----------------cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--cc
Q ss_pred hHHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhc-----
Q 000176 1712 EKLNIWVAYFNLENEYGNPP-------EEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF----- 1779 (1924)
Q Consensus 1712 ekl~lWiayl~le~~~g~~~-------~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~----- 1779 (1924)
-+..+.+.-+.+..-++ + .|.+..++++.......+..-.-++-....-.++.+|..++-..+..|
T Consensus 150 ~KiDv~l~kiRlg~~y~--d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~El 227 (412)
T COG5187 150 LKIDVFLCKIRLGLIYG--DRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESSEL 227 (412)
T ss_pred cchhhHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccccccc
Q ss_pred -CCCHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 000176 1780 -KHSCKVWLRRVQRLLKQ---QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLW 1855 (1924)
Q Consensus 1780 -~~~~~vw~~~a~~l~~~---~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw 1855 (1924)
+.+.-+-+....-+++. +...-.---...|...|....+..+.+++.-++...--.--+.+++--......+ ...
T Consensus 228 ~sY~~~vrYa~~~Gl~~leR~diktki~dspevl~vi~~~e~l~sl~~l~~SLy~cdY~~~F~~ll~~~~n~L~~d-~fl 306 (412)
T COG5187 228 ISYSRAVRYAIFCGLLRLERRDIKTKILDSPEVLDVIGSSEKLGSLVQLATSLYECDYGGDFMNLLYLFCNSLQDD-VFL 306 (412)
T ss_pred ccHHHHHHHHHHhhhheeehhhhhhhhcCCHHHHHhccchhhhhhHHHHHHHHHHhccchhhHHHHHHHHhhccch-HHH
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH-HHHcCCH
Q 000176 1856 SIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEY-EKSVGEE 1905 (1924)
Q Consensus 1856 ~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~-E~~~G~~ 1905 (1924)
...++++.+.-...---+++|..-. +.-+.|..-|-.-++| ++..|.+
T Consensus 307 ~rh~d~fvREMRrrvYaQlLESYr~--lsl~sMA~tFgVSV~yvdrDLg~F 355 (412)
T COG5187 307 GRHVDLFVREMRRRVYAQLLESYRL--LSLESMAQTFGVSVEYVDRDLGEF 355 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHhCccHHHHhhhHHhh
|
|
| >TIGR00008 infA translation initiation factor IF-1 | Back alignment and domain information |
|---|
Probab=80.64 E-value=6.6 Score=36.13 Aligned_cols=60 Identities=25% Similarity=0.281 Sum_probs=47.0
Q ss_pred EEEEEEEEeecceEEE-EEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeE
Q 000176 1460 IVIGQIKRVESYGLFI-TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRIS 1524 (1924)
Q Consensus 1460 ~v~G~V~~v~~~GvFV-~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~ 1524 (1924)
.+.|.|+...+.|.|- .|++ |..-+||+|---. .-.-...+||.|.+.+-..|.+++||.
T Consensus 6 e~~G~V~e~L~~~~f~V~l~n-g~~vla~i~GKmr----~~rI~I~~GD~V~Ve~spyd~tkgrIi 66 (68)
T TIGR00008 6 EMEGKVTESLPNAMFRVELEN-GHEVLAHISGKIR----MHYIRILPGDKVKVELSPYDLTRGRIT 66 (68)
T ss_pred EEEEEEEEECCCCEEEEEECC-CCEEEEEecCcch----hccEEECCCCEEEEEECcccCCcEeEE
Confidence 3789999999988885 7776 8899999975222 112246799999999999999999985
|
This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575). |
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.11 E-value=1.4e+02 Score=37.80 Aligned_cols=137 Identities=16% Similarity=0.066 Sum_probs=97.5
Q ss_pred CHHHHHHHHHHHHhcCCCHHHH----HHHHHHHHHhCChHHHHHHHHHHHHhc--C-----CCHHHHHHHHHHHHhc-CH
Q 000176 1731 PEEAVVKVFQRALQYCDPKKVH----LALLGLYERTEQNKLADELLYKMIKKF--K-----HSCKVWLRRVQRLLKQ-QQ 1798 (1924)
Q Consensus 1731 ~~e~a~~vferAl~~~~~~~i~----~~l~~i~~~~gk~e~A~~~fe~~lk~~--~-----~~~~vw~~~a~~l~~~-~~ 1798 (1924)
..+.|+.-|..|++......+| ..++..|.+.++.+...++.+..--.+ + -...+++.|+-|.+.+ ++
T Consensus 382 ~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~l 461 (629)
T KOG2300|consen 382 CYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDL 461 (629)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccH
Confidence 4588999999999988776554 346668888887666666655543221 1 1256788999999999 99
Q ss_pred HHHHHHHHHHHHhCCCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHH--HHHHHHHHcCC
Q 000176 1799 EGVQAVVQRALLSLPRHKH----IKFISQTAILEFKNGVADRGRSMFEGILSEYPKR----TDLWS--IYLDQEIRLGD 1867 (1924)
Q Consensus 1799 ~~A~~l~~ral~~~p~~~~----~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~----~dlw~--~y~~le~k~gd 1867 (1924)
.+|+..+.+.|+......- .--...++.+....|+--+++.+..-+++...|- ..+|. .|-+++...|+
T Consensus 462 nEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 462 NEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGE 540 (629)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCc
Confidence 9999999999987632211 1234445556668899999999999998765443 34684 46677777776
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1924 | ||||
| 3bzc_A | 785 | Crystal Structure Of The Tex Protein From Pseudomon | 9e-07 | ||
| 2k4k_A | 130 | Solution Structure Of Gsp13 From Bacillus Subtilis | 1e-06 | ||
| 2oce_A | 780 | Crystal Structure Of Tex Family Protein Pa5201 From | 1e-06 | ||
| 1q8k_A | 308 | Solution Structure Of Alpha Subunit Of Human Eif2 L | 8e-05 | ||
| 3cdi_A | 723 | Crystal Structure Of E. Coli Pnpase Length = 723 | 9e-05 | ||
| 3aev_A | 275 | Crystal Structure Of AEIF2ALPHA-Adim2p-Rrna Complex | 1e-04 | ||
| 1yz6_A | 274 | Crystal Structure Of Intact Alpha Subunit Of Aif2 F | 1e-04 | ||
| 1wi5_A | 119 | Solution Structure Of The S1 Rna Binding Domain Fro | 2e-04 | ||
| 1sro_A | 76 | S1 Rna Binding Domain, Nmr, 20 Structures Length = | 2e-04 |
| >pdb|3BZC|A Chain A, Crystal Structure Of The Tex Protein From Pseudomonas Aeruginosa, Crystal Form I Length = 785 | Back alignment and structure |
|
| >pdb|2K4K|A Chain A, Solution Structure Of Gsp13 From Bacillus Subtilis Length = 130 | Back alignment and structure |
|
| >pdb|2OCE|A Chain A, Crystal Structure Of Tex Family Protein Pa5201 From Pseudomonas Aeruginosa Length = 780 | Back alignment and structure |
|
| >pdb|1Q8K|A Chain A, Solution Structure Of Alpha Subunit Of Human Eif2 Length = 308 | Back alignment and structure |
|
| >pdb|3CDI|A Chain A, Crystal Structure Of E. Coli Pnpase Length = 723 | Back alignment and structure |
|
| >pdb|3AEV|A Chain A, Crystal Structure Of AEIF2ALPHA-Adim2p-Rrna Complex From Pyrococcus Horikoshii Ot3 Length = 275 | Back alignment and structure |
|
| >pdb|1YZ6|A Chain A, Crystal Structure Of Intact Alpha Subunit Of Aif2 From Pyrococcus Abyssi Length = 274 | Back alignment and structure |
|
| >pdb|1WI5|A Chain A, Solution Structure Of The S1 Rna Binding Domain From Human Hypothetical Protein Baa11502 Length = 119 | Back alignment and structure |
|
| >pdb|1SRO|A Chain A, S1 Rna Binding Domain, Nmr, 20 Structures Length = 76 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 177 bits (450), Expect = 2e-49
Identities = 43/269 (15%), Positives = 102/269 (37%), Gaps = 31/269 (11%)
Query: 1677 VWIKYMAFMLS--------MADVEKARSIAERALQ-----------TINIREENEKLNIW 1717
+W KY+ + S ++ E+ L E++ KL
Sbjct: 10 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE 69
Query: 1718 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPK--KVHLALLGLYERTEQNKLADELLYKM 1775
N + + +++RA+ K ++ A E + + + ++
Sbjct: 70 KGDMNNAKLFSDEAAN----IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 125
Query: 1776 IKKFK-HSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFK-NG 1832
+ V+++ ++ + + + + + ++A H+ + A++E+ +
Sbjct: 126 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA--ALMEYYCSK 183
Query: 1833 VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI-SLSLPPKKMKFL 1891
+FE L +Y + Y+D L + + R LFER + S SLPP+K +
Sbjct: 184 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 243
Query: 1892 FKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
+ ++L +E ++G+ I V+++
Sbjct: 244 WARFLAFESNIGDLASILKVEKRRFTAFR 272
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 78.2 bits (192), Expect = 2e-15
Identities = 38/269 (14%), Positives = 87/269 (32%), Gaps = 28/269 (10%)
Query: 1637 EKEEREQEIRAAEERLLEKDAPRTPDEFERLVRS-SPNSSFVWIKYMAFMLSMADVEKAR 1695
++ + + + + + +ER + + + ++ Y + S EK
Sbjct: 60 LEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH 119
Query: 1696 SIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLAL 1755
SI R L E+ + +++ Y ++ +F++A + +
Sbjct: 120 SIYNRLLA----IEDIDPTLVYIQYMKFARRAEGI--KSGRMIFKKAREDARTRHHVYVT 173
Query: 1756 LGLYERTEQN--KLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL--L 1810
L E +A ++ +KK+ + L + L + + + +R L
Sbjct: 174 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233
Query: 1811 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL 1870
SLP K + ++ E G + + + + + + L
Sbjct: 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETAL----------- 282
Query: 1871 IRGLFERAISLSLPPKKMKFLFKKYLEYE 1899
L +R + L P L K L Y+
Sbjct: 283 ---LVDRYKFMDLYPCSASEL--KALGYK 306
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 74.3 bits (182), Expect = 4e-14
Identities = 26/218 (11%), Positives = 74/218 (33%), Gaps = 30/218 (13%)
Query: 1709 EENEKLNIWVAYFNLENEYGNPPEEA------VVKVFQRALQYCDPKKVHLALLGLYERT 1762
+E +++++W Y E E+ V+ +++ L
Sbjct: 3 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL---------------- 46
Query: 1763 EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPRHKHIKFI 1821
++ Y+ + + S K+ + + + + +RA+ +L K++
Sbjct: 47 ---GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLY 102
Query: 1822 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDL-WSIYLDQEIRLGDVDLIRGLFERAIS 1880
A E ++ S++ +L+ L + Y+ R + R +F++A
Sbjct: 103 FAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 162
Query: 1881 LSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918
+ ++ +EY ++ + + ++
Sbjct: 163 -DARTRHHVYVTAALMEY-YCSKDKSVAFKIFELGLKK 198
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 67.8 bits (165), Expect = 6e-12
Identities = 26/200 (13%), Positives = 58/200 (29%), Gaps = 28/200 (14%)
Query: 1631 RHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMAD 1690
+A +E + +++ + RLL + + + V+I+YM F
Sbjct: 104 AYADYEESRMKYEKVHSIYNRLLAIE--------------DIDPTLVYIQYMKFARRAEG 149
Query: 1691 VEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKK 1750
++ R I ++A + R +V +E A K+F+ L+
Sbjct: 150 IKSGRMIFKKAREDARTRHHV-----YVTAALMEYYCSKDKSVA-FKIFELGLKKY-GDI 202
Query: 1751 VHL--ALLGLYERTEQNKLADELLYKMIKKFK---HSCKVWLRRVQRLLKQQ--QEGVQA 1803
A + ++ L +++ R +
Sbjct: 203 PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 262
Query: 1804 VVQRALLSLPRHKHIKFISQ 1823
V +R + K +
Sbjct: 263 VEKRRFTAFREEYEGKETAL 282
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 65.5 bits (159), Expect = 4e-11
Identities = 25/147 (17%), Positives = 53/147 (36%), Gaps = 8/147 (5%)
Query: 1616 QGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAE-ERLLEKDAPRTPDEFERLVRSSPNS 1674
+ I +K A++ + + AA E KD FE ++ +
Sbjct: 147 AEGIKSGRMIFKK----AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI 202
Query: 1675 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1734
+ Y+ ++ + + R + ER L + ++ E IW + E+ G+ +
Sbjct: 203 PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE-IWARFLAFESNIGD--LAS 259
Query: 1735 VVKVFQRALQYCDPKKVHLALLGLYER 1761
++KV +R + L +R
Sbjct: 260 ILKVEKRRFTAFREEYEGKETALLVDR 286
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 8e-04
Identities = 25/179 (13%), Positives = 55/179 (30%), Gaps = 22/179 (12%)
Query: 1612 ISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAA--EERLLEKDAPRTPDEFERLVR 1669
+++ ++ +I NR ++ + I+ R + R F++
Sbjct: 108 YEESRMKYEKVHSI---YNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGR--MIFKKARE 162
Query: 1670 SSPNSSFVWIKYMAFMLSMA--DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEY 1727
+ V++ A M D A I E L+ E +AY + +
Sbjct: 163 DARTRHHVYVTA-ALMEYYCSKDKSVAFKIFELGLKKYGDIPE-----YVLAYIDYLSHL 216
Query: 1728 GNPPEEAVVKVFQRALQYCD-PKKVHLALLGLYERTEQN----KLADELLYKMIKKFKH 1781
+ +F+R L P + + + E N ++ + F+
Sbjct: 217 NE--DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 2e-38
Identities = 46/332 (13%), Positives = 119/332 (35%), Gaps = 36/332 (10%)
Query: 1614 QNQGHTDEAKTIDEKNNRHAKKKEK-EEREQEIRAAEERLLEKDAPRTPDEFERLVRSSP 1672
+ K I++++ + + +E E ++ + TP E
Sbjct: 176 EGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQE--------A 227
Query: 1673 NSSFVWIKYMAFMLSMAD--------VEKARSIAERALQTIN---------IREENEKLN 1715
+W KY+ + S ++ E+ L + + +
Sbjct: 228 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSK 287
Query: 1716 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK--KVHLALLGLYERTEQNKLADELLY 1773
+ ++ N + +++RA+ K ++ A E + + +
Sbjct: 288 LLAEKGDMNNAKLFS--DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYN 345
Query: 1774 KMIKKFKHSC-KVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFK- 1830
+++ V+++ ++ + + + + + ++A H+ A++E+
Sbjct: 346 RLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYV--TAALMEYYC 403
Query: 1831 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS-LSLPPKKMK 1889
+ +FE L +Y + Y+D L + + R LFER ++ SLPP+K
Sbjct: 404 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 463
Query: 1890 FLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
++ ++L +E ++G+ I V+++
Sbjct: 464 EIWARFLAFESNIGDLASILKVEKRRFTAFRE 495
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 89.5 bits (221), Expect = 3e-18
Identities = 40/278 (14%), Positives = 91/278 (32%), Gaps = 40/278 (14%)
Query: 1645 IRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT 1704
IR A+ + ++ + +ERLV P+S W Y+ + + +K + +R L
Sbjct: 20 IREAQNQPID----KARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK 75
Query: 1705 INIREENEKLNIWVAYFN-LENEYGNPPE--EAVVKVFQRALQYCDPKKVHLALLGLYER 1761
+ +++W Y + + G P E + + + AL + + + Y
Sbjct: 76 VL------HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDY-- 127
Query: 1762 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFI 1821
F + + Q+ V+ V QR ++ P +
Sbjct: 128 ---------------INFLKGVEAVGSYAE---NQRITAVRRVYQRGCVN-PMINIEQLW 168
Query: 1822 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1881
E + + + + + + + E + L R
Sbjct: 169 RDYNKYEEGINIHLAKKMIED----RSRDYMNARRVAKEYETVMK--GLDRNAPSVPPQN 222
Query: 1882 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919
+ + ++KKY+++EKS + + K + +
Sbjct: 223 TPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFA 260
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 2e-07
Identities = 20/150 (13%), Positives = 47/150 (31%), Gaps = 12/150 (8%)
Query: 1771 LLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKH--IKFISQTAILE 1828
+ K +++ + W ++ Q + + +R + P +I E
Sbjct: 1 MAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIE----AE 56
Query: 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-----GDVDLIRGLFERAISLSL 1883
K D+ +F+ L + DLW YL + + ++ A+
Sbjct: 57 IKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIG 115
Query: 1884 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQ 1913
++ Y+ + K V ++
Sbjct: 116 MEIMSYQIWVDYINFLKGVEAVGSYAENQR 145
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 8e-04
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 1840 MFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYE 1899
M E L E P D WSI + +E + +D R +ER ++ P + +K Y+E E
Sbjct: 1 MAEKKLEENPYDLDAWSILI-REAQNQPIDKARKTYERLVAQF--PSSGR-FWKLYIEAE 56
Query: 1900 KSVGEEERIEYVKQKAMEYVES 1921
+++E + Q+ + V
Sbjct: 57 IKAKNYDKVEKLFQRCLMKVLH 78
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 | Back alignment and structure |
|---|
Score = 149 bits (376), Expect = 7e-37
Identities = 48/473 (10%), Positives = 136/473 (28%), Gaps = 49/473 (10%)
Query: 1486 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEE 1545
++ E IE + ++ + I+ K + + + +
Sbjct: 109 LEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQ 168
Query: 1546 ESDEAIEEVGSYNRSS-----LLENSSVAVQDMDMESEDGGSLVLAQIESRA-SVPPLEV 1599
+++ + S + + ++ E + ++ P +
Sbjct: 169 AFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCL 228
Query: 1600 NLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEK-EEREQEIRAAEERLLEKDAP 1658
++ Q+ + I E + ++ + ++ + + L
Sbjct: 229 ESMWQR---YTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285
Query: 1659 RTPDEFERLVRSSPNSSFVWIKYMAFMLS-------MADVEKARSIAERALQTINIREEN 1711
T + +W++++ + + + +A Q + E
Sbjct: 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPE- 344
Query: 1712 EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC-DPKKVHLALLGLYERTEQNKLADE 1770
IW N + E + K + Q + + +L YE + +
Sbjct: 345 ----IWFNMANYQGEKNTD-STVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIET 399
Query: 1771 LLYKMIKKF----------------------KHSCKVWLRRVQRLLKQQQ-EGVQAVVQR 1807
+ I + V+ + + + Q + + +
Sbjct: 400 TILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459
Query: 1808 ALLSLPRHKHIKFISQTAILEFK-NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1866
++ + A +E+ + + E L + + + YLD I +
Sbjct: 460 CRRLKKLVTPDIYL-ENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVN 518
Query: 1867 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919
+ ++ LFE +I +K +F+K + +E VG + ++++ E
Sbjct: 519 EESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 | Back alignment and structure |
|---|
Score = 68.5 bits (166), Expect = 2e-11
Identities = 35/315 (11%), Positives = 91/315 (28%), Gaps = 51/315 (16%)
Query: 1637 EKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARS 1696
++ R + +D + ++ P F+++K + +S+ ++
Sbjct: 28 QQMGRGSMSTSLRPTSRVRDESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYE 87
Query: 1697 IAERALQTINIREENEKLNIWVAYFNLE-NEYGNPPEEAVVKVFQRALQYC-DPKKVHLA 1754
++ + NIW +LE ++ + V R L + L
Sbjct: 88 TFDKLHDRFPLMA-----NIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142
Query: 1755 LLGLYERTEQNKLADEL--------------LYKMIKKFKHSCKVWLRRVQRLL------ 1794
L + ++N + + K S + W + L
Sbjct: 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVN 202
Query: 1795 ----KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY-P 1849
+Q+ + ++ + + L + + D + + E
Sbjct: 203 KFEEQQRVQYIRKLYKTLLCQPMDCLESMWQ------RYTQWEQDVNQLTARRHIGELSA 256
Query: 1850 KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK------KMKFLFKKYLEYEKS-- 1901
+ + S+Y D + + + S PK + ++ +++ +E
Sbjct: 257 QYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNK 316
Query: 1902 -----VGEEERIEYV 1911
+ R+ YV
Sbjct: 317 LELSDDLHKARMTYV 331
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 137 bits (345), Expect = 8e-34
Identities = 43/310 (13%), Positives = 94/310 (30%), Gaps = 31/310 (10%)
Query: 1620 DEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWI 1679
+ + + + N+ KK + +++ +R + +
Sbjct: 128 KDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQ-----PLIRGWSVKNAARLIDLE 182
Query: 1680 KYMAFML-SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKV 1738
L + I L + EE ++ Y G E KV
Sbjct: 183 MENGMKLGGRPHESRMHFIHNYILDSFYYAEE-----VYFFYSEYLIGIGQK--EKAKKV 235
Query: 1739 FQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSC------KVWLRRVQR 1792
+R ++ D + L + + + + + +
Sbjct: 236 VERGIEMSDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNY 295
Query: 1793 LLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFK-NGVADRGRSMFEGILSEYPK 1850
+LK++ E + + A +E+ G ++F L ++P
Sbjct: 296 VLKKRGLELFRKLFIELGNEGVGPHVFI---YCAFIEYYATGSRATPYNIFSSGLLKHPD 352
Query: 1851 RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEY 1910
T L + +R+GD + R LF+R +K ++ +EYE VG E
Sbjct: 353 STLLKEEFFLFLLRIGDEENARALFKRL-------EKTSRMWDSMIEYEFMVGSMELFRE 405
Query: 1911 VKQKAMEYVE 1920
+ + M+ ++
Sbjct: 406 LVDQKMDAIK 415
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 90.3 bits (223), Expect = 1e-18
Identities = 40/283 (14%), Positives = 87/283 (30%), Gaps = 38/283 (13%)
Query: 1663 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN 1722
+ E + +S +++ + D S+ R L+ N L W+ Y
Sbjct: 2 DAEEKMGVELSSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY----NLDL--WMLYIE 55
Query: 1723 LENEYGNPPEEAVVKVFQRALQYCDPKKVHLALL---------------------GLYER 1761
+ + + +V++ L + L Y R
Sbjct: 56 YVRKVSQKKFK-LYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMR 114
Query: 1762 TEQNKLAD-ELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKF 1820
Q + L+K + F+ + + + L R +K
Sbjct: 115 ALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKN 174
Query: 1821 ISQTAILEFKNG-------VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRG 1873
++ LE +NG R + IL + +++ Y + I +G + +
Sbjct: 175 AARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKK 234
Query: 1874 LFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916
+ ER I + L+ + E++V + + +Y +A
Sbjct: 235 VVERGI--EMSDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAE 275
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 5e-05
Identities = 21/145 (14%), Positives = 51/145 (35%), Gaps = 20/145 (13%)
Query: 1786 WLRRVQRLLKQQQ-EGVQAVVQRALLSLPR----HKHIKFISQTAILEFKNGVADRGRSM 1840
+ +RL + ++++ R L +I+++ + + +
Sbjct: 17 IMEHARRLYMSKDYRSLESLFGRCLKKSYNLDLWMLYIEYV------RKVSQKKFKLYEV 70
Query: 1841 FEGILSE---YPKRTDLWSIYLD----QEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1893
+E L + Y L+ Y++ E ++ IR + RA L P + L+K
Sbjct: 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRA--LQTPMGSLSELWK 128
Query: 1894 KYLEYEKSVGEEERIEYVKQKAMEY 1918
+ +E + + + V +
Sbjct: 129 DFENFELELNKITGKKIVGDTLPIF 153
|
| >1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5 Length = 119 | Back alignment and structure |
|---|
Score = 93.9 bits (233), Expect = 1e-22
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 219 SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGID 273
+ + LS E ++ GM+LT V S+EDHGY++ G+ FLP E N G
Sbjct: 8 KNVNRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAK 67
Query: 274 VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLL 319
+K G L +V + VV LS VS + + + +++ L
Sbjct: 68 LKVGQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNL 113
|
| >1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5 Length = 119 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 2e-07
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQF-PGGVKALCPLPHMSEFEIVK-PGKKFKVGA 547
V + +KPGM++ G V +++ G +V G +A PL E+ K G K KVG
Sbjct: 13 VLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQ 72
Query: 548 ELVFRVLGVKS--KRITVTHKKTLVKSKLA 575
L V VK ++++ + V + +A
Sbjct: 73 YLNCIVEKVKGNGGVVSLSVGHSEVSTAIA 102
|
| >1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5 Length = 119 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 2e-07
Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Query: 1361 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY--VESPEKEFPIGKLV 1418
E L P M++ G V ++ G + + L + Y ++ + +G+ +
Sbjct: 15 SAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYL 74
Query: 1419 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS 1453
V V+ V +++ S+ TA +E + +
Sbjct: 75 NCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWN 109
|
| >1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5 Length = 119 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 3e-06
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 1/85 (1%)
Query: 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED-HVDNIETIYRAGEKV 1509
+ L G ++ G + +E +G + I + + E N + G+ +
Sbjct: 15 SAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYL 74
Query: 1510 KVKILKVDKEKRRISLGMKSSYFKN 1534
+ KV +SL + S
Sbjct: 75 NCIVEKVKGNGGVVSLSVGHSEVST 99
|
| >1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5 Length = 119 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 8e-06
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Query: 755 DASHIHPNSVVHGYVCNIIETGCFVRF-LGRLTGFAPRSKAVDGQRA-DLSKTYYVGQSV 812
A + P ++ G V ++ + G V + F P KA + R + VGQ +
Sbjct: 15 SAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYL 74
Query: 813 RSNILDVNSETGRITLSLKQSCCSSTDAS 841
+ V G ++LS+ S S+ A+
Sbjct: 75 NCIVEKVKGNGGVVSLSVGHSEVSTAIAT 103
|
| >1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5 Length = 119 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 4e-05
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 587 LITHGWITKIEKHGCFVRF-YNGVQGFAPRSELGLD-PGCEPSSMYHVGQVVKCRIMSSI 644
++ G ++ +E HG V +G + F P + + VGQ + C +
Sbjct: 23 MLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVK 82
Query: 645 PASRRINLSFMMKPTRVSE 663
++LS + + VS
Sbjct: 83 GNGGVVSLS--VGHSEVST 99
|
| >2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} Length = 109 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 1e-20
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1511
++ G IV G++ V++ G + + + + G SE S D V++ + G++V+
Sbjct: 26 VALNKKGAIVTGKVTAVDAKGATVELAD-GVEGYLRASEASRDRVEDATLVLSVGDEVEA 84
Query: 1512 KILKVDKEKRRISLGMK 1528
K VD++ R ISL ++
Sbjct: 85 KFTGVDRKNRAISLSVR 101
|
| >2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} Length = 109 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 3e-08
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
+ K G +V GKV AVD+ GA V+ GV+ S + VG E+ +
Sbjct: 27 ALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKF 86
Query: 554 LGV--KSKRITVTHK 566
GV K++ I+++ +
Sbjct: 87 TGVDRKNRAISLSVR 101
|
| >2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} Length = 109 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 7e-07
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
I G +T ++ G V +GV+G+ SE D + + + VG V+ + +
Sbjct: 34 IVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKN 93
Query: 648 RRINLS 653
R I+LS
Sbjct: 94 RAISLS 99
|
| >2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} Length = 109 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 2e-06
Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 36/130 (27%)
Query: 817 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
+ + + L WV G+
Sbjct: 1 MGSSHHHHHHSSGLVP---------------RGSHMFN------------NWVALNKKGA 33
Query: 877 VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAK 929
++ GKV + G V + V G++ + + VE G ++A V +
Sbjct: 34 IVTGKVTAVDAKGATVELAD--GVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDR 91
Query: 930 AERLVDLSLK 939
R + LS++
Sbjct: 92 KNRAISLSVR 101
|
| >2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} Length = 109 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 6e-06
Identities = 15/76 (19%), Positives = 32/76 (42%)
Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
+ IV G V V +KG + L+ ++ + S S VE +G V +
Sbjct: 26 VALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAK 85
Query: 1422 VLSVEPLSKRVEVTLK 1437
V+ ++ + ++++
Sbjct: 86 FTGVDRKNRAISLSVR 101
|
| >2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} Length = 109 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 2e-05
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 5/87 (5%)
Query: 751 QLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 805
S + ++V G V + G V + G+ S+A + D +
Sbjct: 16 PRGSHMFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLV 75
Query: 806 YYVGQSVRSNILDVNSETGRITLSLKQ 832
VG V + V+ + I+LS++
Sbjct: 76 LSVGDEVEAKFTGVDRKNRAISLSVRA 102
|
| >2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} Length = 109 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 8e-04
Identities = 20/119 (16%), Positives = 40/119 (33%), Gaps = 23/119 (19%)
Query: 1221 LSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
+ + L F + ++ +G IV G+++ + +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMFNNWVAL-------------NKKGAIVTGKVTAVDAK-- 45
Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
G V++ + G + +E V D G V+ K + R R + LS+R
Sbjct: 46 GATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNR---AISLSVR 101
|
| >2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis} Length = 130 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 4e-19
Identities = 25/76 (32%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
+ VG + G++ +++YG F+ ++ GL H+SE++ V +I G++V+VK
Sbjct: 3 AKFEVGSVYTGKVTGLQAYGAFVALDE-ETQGLVHISEVTHGFVKDINEHLSVGDEVQVK 61
Query: 1513 ILKVDKEKRRISLGMK 1528
+L VD+EK +ISL ++
Sbjct: 62 VLAVDEEKGKISLSIR 77
|
| >2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis} Length = 130 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 6e-11
Identities = 18/131 (13%), Positives = 49/131 (37%), Gaps = 7/131 (5%)
Query: 1363 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1422
+ G V + + G F+ L + V +S ++ G+V+ + +G V +V
Sbjct: 3 AKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKV 62
Query: 1423 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1482
L+V+ ++ ++++ + + + + + F T+++ L
Sbjct: 63 LAVDEEKGKISLSIRATQAAPEKKES------KPRKPKAAQVSEEASTPQGFNTLKD-KL 115
Query: 1483 VGLCHVSELSE 1493
+S +
Sbjct: 116 EEWIEMSNRKD 126
|
| >2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis} Length = 130 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 1e-09
Identities = 19/127 (14%), Positives = 44/127 (34%), Gaps = 7/127 (5%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
+ + G V GKV + ++GA V + L + ++ + + VG E+ +V
Sbjct: 3 AKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKV 62
Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
L V + +I+++ + T + + F + ++
Sbjct: 63 LAVDEEKGKISLSIRATQAAPEKKESKPRKPKAA-----QVSEEASTPQGFNTLKDKLEE 117
Query: 612 FAPRSEL 618
+ S
Sbjct: 118 WIEMSNR 124
|
| >2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis} Length = 130 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 5e-07
Identities = 30/133 (22%), Positives = 49/133 (36%), Gaps = 11/133 (8%)
Query: 756 ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSN 815
A+ SV G V + G FV G S+ G D+++ VG V+
Sbjct: 2 AAKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVK 61
Query: 816 ILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI-I 874
+L V+ E G+I+LS++ Q +E + E +GF +
Sbjct: 62 VLAVDEEKGKISLSIRA----------TQAAPEKKESKPRKPKAAQVSEEASTPQGFNTL 111
Query: 875 GSVIEGKVHESND 887
+E + SN
Sbjct: 112 KDKLEEWIEMSNR 124
|
| >2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis} Length = 130 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 1e-05
Identities = 28/146 (19%), Positives = 50/146 (34%), Gaps = 24/146 (16%)
Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
G + G+++ + + G V + G VH +E+ + V D G V+ KV
Sbjct: 5 FEVGSVYTGKVTGLQAY--GAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKV 62
Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
L + + LS+R++ EK E +
Sbjct: 63 LAVDEEKG---KISLSIRATQAAP-------------------EKKESKPRKPKAAQVSE 100
Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNLSD 1402
++ F L KL+ + +SN D
Sbjct: 101 EASTPQGFNTLKDKLEEWIEMSNRKD 126
|
| >2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis} Length = 130 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 6e-04
Identities = 15/66 (22%), Positives = 30/66 (45%)
Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
+ G +T ++ +G FV QG SE+ + + VG V+ ++++
Sbjct: 10 VYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEK 69
Query: 648 RRINLS 653
+I+LS
Sbjct: 70 GKISLS 75
|
| >1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 Length = 182 | Back alignment and structure |
|---|
Score = 83.3 bits (206), Expect = 3e-18
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 1457 VGDIVIGQIKRVESYGLFITI-ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1515
V D+V+ ++ + G ++++ E N+ G+ +SELS + +I + R G V +++
Sbjct: 15 VEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIR 74
Query: 1516 VDKEKRRISLGMK 1528
VDKEK I L +
Sbjct: 75 VDKEKGYIDLSKR 87
|
| >1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 Length = 182 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 9e-09
Identities = 14/113 (12%), Positives = 40/113 (35%), Gaps = 7/113 (6%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFP--GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
+ VV V ++ GA V ++ + L +S I K ++G V+
Sbjct: 14 EVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVI 73
Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 605
V + I ++ ++ + + + ++ + + + + + +
Sbjct: 74 RVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSK---TVYSILRHVAEVLEYTKD 123
|
| >1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 Length = 182 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 2e-08
Identities = 26/168 (15%), Positives = 61/168 (36%), Gaps = 15/168 (8%)
Query: 1367 PNMIVQGYVKNVTSKGCFIMLSRK--LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
+V V+++ G ++ L ++ +LLS LS + S K IG+ V+
Sbjct: 15 VEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIR 74
Query: 1425 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1484
V+ ++++ + R + + I V ++ V + E L
Sbjct: 75 VDKEKGYIDLSKR----RVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDE--QLES 128
Query: 1485 LCHVS--ELSEDHVDNIETIYRAGEKVK-----VKILKVDKEKRRISL 1525
L + + + Y A + + L +++++R + +
Sbjct: 129 LFQRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSLDLNEDEREVLI 176
|
| >1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 Length = 182 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 12/102 (11%)
Query: 588 ITHGWITKIEKHGCFVRF--YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 645
+ + I + G +V YN ++G SEL + + +G+ ++
Sbjct: 18 VVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDK 77
Query: 646 ASRRINLSFMMKPTRVSEDDLV------KLGSLVSGVVDVVT 681
I+LS + RVS ++ + V ++ V
Sbjct: 78 EKGYIDLS--KR--RVSPEEAIKCEDKFTKSKTVYSILRHVA 115
|
| >1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 Length = 182 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 5e-05
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 761 PNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
VV V +I E G +V L + G S+ + ++K +G++ ++
Sbjct: 15 VEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIR 74
Query: 819 VNSETGRITLSLKQ 832
V+ E G I LS ++
Sbjct: 75 VDKEKGYIDLSKRR 88
|
| >1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 Length = 182 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 6e-04
Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 874 IGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILD 926
+ V+ V + G VS E++++ G I +L+ + S G ++
Sbjct: 15 VEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIR 74
Query: 927 VAKAERLVDLSLKTVFIDRFREA 949
V K + +DLS + V + +
Sbjct: 75 VDKEKGYIDLSKRRVSPEEAIKC 97
|
| >2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A Length = 175 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 2e-17
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1457 VGDIVIGQIKRVESYGLFITI-ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1515
+ DIV+ ++++ G ++ + E N+ G+ +SELS + +I+ + R G+ +L+
Sbjct: 15 IDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLR 74
Query: 1516 VDKEKRRISLGMK 1528
VDKEK I L +
Sbjct: 75 VDKEKGYIDLSKR 87
|
| >2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A Length = 175 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 3e-13
Identities = 25/166 (15%), Positives = 58/166 (34%), Gaps = 13/166 (7%)
Query: 1367 PNMIVQGYVKNVTSKGCFIMLSRK--LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
+ IV V+ + G ++ L ++ +LLS LS + S +K +GK VL
Sbjct: 15 IDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLR 74
Query: 1425 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1484
V+ ++++ + R +S+ I V ++ + I +E
Sbjct: 75 VDKEKGYIDLSKR----RVSSEDIIKCEEKYQKSKTVHSILRYC-AEKFQIPLE-----E 124
Query: 1485 LCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529
L + ++ + ++ + + +K+
Sbjct: 125 LYKTIAWPLSRKFGHAYEAFKLSIIDETVWEGIEPPSKDVLDELKN 170
|
| >2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A Length = 175 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 1e-07
Identities = 20/163 (12%), Positives = 50/163 (30%), Gaps = 11/163 (6%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFP--GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
+ +V V + GA V+ ++ + L +S I K +VG V VL
Sbjct: 14 EIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVL 73
Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
V + I ++ ++ + + Y ++ + I ++ + +
Sbjct: 74 RVDKEKGYIDLSKRRVSSEDIIKCEEKYQKSKT-------VHSILRYCAEKFQIPLEELY 126
Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
+ + + + + P S+ +
Sbjct: 127 KTIAWPLSRKFGHAYEAFKLSIIDETVWEGIEPPSKDVLDELK 169
|
| >2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A Length = 175 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 27/189 (14%), Positives = 56/189 (29%), Gaps = 32/189 (16%)
Query: 761 PNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
+ +V V I E G +V+ L + G S+ + + K VG++ + +L
Sbjct: 15 IDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLR 74
Query: 819 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE--GFIIGS 876
V+ E G I LS ++ + E+ I + + + + +
Sbjct: 75 VDKEKGYIDLSKRR----------VSS----EDIIKCEEKYQKSKTVHSILRYCAEKFQI 120
Query: 877 VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 936
+E + Y + + + + + V
Sbjct: 121 PLEELYKTIAW----PLSRKFGHAYEA----------FKLSIIDETVWEGIEPPSKDVLD 166
Query: 937 SLKTVFIDR 945
LK R
Sbjct: 167 ELKNYISKR 175
|
| >2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A Length = 175 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 25/159 (15%), Positives = 51/159 (32%), Gaps = 26/159 (16%)
Query: 874 IGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA-------GATVESGSVIQAAILD 926
I ++ V + + G V E+ ++ G I +L+ + G A +L
Sbjct: 15 IDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLR 74
Query: 927 VAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYL 986
V K + +DLS + V + + + +TV++I+ E
Sbjct: 75 VDKEKGYIDLSKRRV---------------SSEDIIKCEEKYQKSKTVHSILRYCAEK-F 118
Query: 987 VLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATV 1025
+ L E +I + + + F
Sbjct: 119 QIPLEELYKTIAWPLSRKFGH---AYEAFKLSIIDETVW 154
|
| >2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} Length = 115 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 5e-17
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKV 1511
G + G++ + YG F+ IE + GL HVSE+ + + + G+ V+V
Sbjct: 26 KRYPEGTKLTGRVTNLTDYGCFVEIEE-GVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEV 84
Query: 1512 KILKVDKEKRRISLGMK 1528
+L +D+E+RRISLG+K
Sbjct: 85 MVLDIDEERRRISLGLK 101
|
| >2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} Length = 115 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 5e-06
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF----EIVKPGKKFKVGAELVFR 552
G + G+V + +G V+ GV+ L H+SE + + P K VG +
Sbjct: 29 PEGTKLTGRVTNLTDYGCFVEIEEGVEGLV---HVSEMDWTNKNIHPSKVVNVGDVVEVM 85
Query: 553 VLGV--KSKRITVTHKKTL 569
VL + + +RI++ K+
Sbjct: 86 VLDIDEERRRISLGLKQCK 104
|
| >2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} Length = 115 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
G +T + +GCFV GV+G SE+ + PS + +VG VV+ ++ RR
Sbjct: 36 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 95
Query: 650 INLS 653
I+L
Sbjct: 96 ISLG 99
|
| >2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 8e-17
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 1439 SDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD 1497
S S + + NL + I G++ V YG FI I GL H + +S VD
Sbjct: 3 SGSSGMNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVD 62
Query: 1498 NIETIYRAGEKVKVKILKVD--KEKRRISLGMK 1528
I G+KV VK++ + ++ ++SL MK
Sbjct: 63 KPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMK 95
|
| >2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii} Length = 80 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 1e-16
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
+ G G + R+E YG FI + + GL ++ ++N G+++ V+ +
Sbjct: 3 VEPGKFYKGVVTRIEKYGAFINLNE-QVRGLLRPRDMISLRLEN----LNVGDEIIVQAI 57
Query: 1515 KVDKEKRRISLGMK 1528
V EKR I
Sbjct: 58 DVRPEKREIDFKYI 71
|
| >2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii} Length = 80 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-07
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
DV+PG KG V ++ +GA + V+ L M + + VG E++ + +
Sbjct: 2 DVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLRL----ENLNVGDEIIVQAI 57
Query: 555 GV--KSKRITVTHK 566
V + + I +
Sbjct: 58 DVRPEKREIDFKYI 71
|
| >2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii} Length = 80 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 7e-05
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
G +T+IEK+G F+ V+G ++ +VG + + + P
Sbjct: 8 FYKGVVTRIEKYGAFINLNEQVRGLLRPRDMIS----LRLENLNVGDEIIVQAIDVRPEK 63
Query: 648 RRINLSF 654
R I+ +
Sbjct: 64 REIDFKY 70
|
| >2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii} Length = 80 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 3e-04
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 4/74 (5%)
Query: 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
+ P G V I + G F+ ++ G + + +L+ VG + +D
Sbjct: 3 VEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLRLENLN----VGDEIIVQAID 58
Query: 819 VNSETGRITLSLKQ 832
V E I
Sbjct: 59 VRPEKREIDFKYIP 72
|
| >2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii} Length = 80 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 4e-04
Identities = 6/63 (9%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
+ G G +++I G + + + G + ++ ++ + + + G + +
Sbjct: 3 VEPGKFYKGVVTRIEKY--GAFINLNEQVRGLLRPRDMISLRLEN----LNVGDEIIVQA 56
Query: 1317 LEI 1319
+++
Sbjct: 57 IDV 59
|
| >3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A Length = 275 | Back alignment and structure |
|---|
Score = 78.1 bits (192), Expect = 2e-15
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 1457 VGDIVIGQIKRVESYGLFITI-ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1515
G+ V+ +KR+ +YG F+ + E H+SE++ V NI + G+KV K+++
Sbjct: 11 EGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIR 70
Query: 1516 VDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDM 1575
VD K I L ++ + LQ + E + + + E + V
Sbjct: 71 VDPRKGHIDLSLRRVTQQQRKAKLQEFKRAQKAENLLRLAAEKLGKDFEAAWREVWVPLE 130
Query: 1576 E 1576
E
Sbjct: 131 E 131
|
| >3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A Length = 275 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 3e-05
Identities = 16/93 (17%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFP--GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
+ G V V + ++GA ++ G +A + ++ + K G ++V +V+
Sbjct: 10 EEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVI 69
Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATD 585
V + I ++ ++ + + A L + A
Sbjct: 70 RVDPRKGHIDLSLRRVTQQQRKAKLQEFKRAQK 102
|
| >1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1 Length = 308 | Back alignment and structure |
|---|
Score = 78.1 bits (192), Expect = 2e-15
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 1457 VGDIVIGQIKRVESYGLFITI-ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1515
V D+V+ ++ ++ G ++++ E N+ G+ H+SELS + +I + R G VK+++
Sbjct: 13 VEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIR 72
Query: 1516 VDKEKRRISLGMK 1528
VDKEK I L +
Sbjct: 73 VDKEKGYIDLSKR 85
|
| >1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1 Length = 308 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 6e-07
Identities = 23/174 (13%), Positives = 60/174 (34%), Gaps = 11/174 (6%)
Query: 1367 PNMIVQGYVKNVTSKGCFIMLSRK--LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
+V V+++ G ++ L ++ + LS LS + S K IG+ +V+
Sbjct: 13 VEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIR 72
Query: 1425 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1484
V+ ++++ + R + + I V ++ V + E +
Sbjct: 73 VDKEKGYIDLSKR----RVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLF 128
Query: 1485 LCHVSELSEDHVDNIETIYRAGEK-----VKVKILKVDKEKRRISLGMKSSYFK 1533
+ + Y A + + L +++++R + + +
Sbjct: 129 QRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSLDLNEDEREVLINNINRRLT 182
|
| >1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1 Length = 308 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 2e-06
Identities = 14/112 (12%), Positives = 41/112 (36%), Gaps = 7/112 (6%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFP--GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
+ VV V ++ GA V ++ + L +S I K ++G +V+
Sbjct: 12 EVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVI 71
Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVR 604
V + I ++ ++ + + + ++ + + + + + +
Sbjct: 72 RVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKT---VYSILRHVAEVLEYTK 120
|
| >1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1 Length = 308 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 6e-04
Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 12/100 (12%)
Query: 591 GWITKIEKHGCFVRF--YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
+ I++ G +V YN ++G SEL + + +G+ +++
Sbjct: 19 VNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKG 78
Query: 649 RINLSFMMKPTRVSEDDL------VKLGSLVSGVVDVVTP 682
I+LS RVS ++ V ++ V
Sbjct: 79 YIDLSK----RRVSPEEAIKCEDKFTKSKTVYSILRHVAE 114
|
| >3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B* Length = 266 | Back alignment and structure |
|---|
Score = 75.8 bits (186), Expect = 7e-15
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 1457 VGDIVIGQIKRVESYGLFITI-ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1515
G+I+I +K+V YG ++++ E L SE+S V NI + + KV VK+++
Sbjct: 11 EGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIR 70
Query: 1516 VDKEKRRISLGMK 1528
VD+ K + + +K
Sbjct: 71 VDRRKGTVDVSLK 83
|
| >3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B* Length = 266 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 16/107 (14%), Positives = 38/107 (35%), Gaps = 7/107 (6%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFP--GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
G ++ V V +G+ V GG++A P +S + K +++ +V+
Sbjct: 10 SEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVI 69
Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 599
V + + V+ KK + + + + + +
Sbjct: 70 RVDRRKGTVDVSLKKVTDDERRKKNLQWKKIQR---LDKILELVSQK 113
|
| >3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B* Length = 266 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 4e-04
Identities = 27/159 (16%), Positives = 57/159 (35%), Gaps = 7/159 (4%)
Query: 1367 PNMIVQGYVKNVTSKGCFIMLSR--KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
I+ VK V G ++ L L A + S +S +V++ + V +V+
Sbjct: 11 EGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIR 70
Query: 1425 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1484
V+ V+V+LK + + +I + S L ++ ++
Sbjct: 71 VDRRKGTVDVSLK----KVTDDERRKKNLQWKKIQRL-DKILELVSQKLKLSEKDAWEQV 125
Query: 1485 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1523
+ D + IE + GEK+ + + + +
Sbjct: 126 AWKLEAKYGDPITAIEKAVKEGEKILIDAGVPEIWVKPL 164
|
| >3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae} Length = 1030 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 2e-13
Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 1/88 (1%)
Query: 1360 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE-FPIGKLV 1418
E + I+ V+ + +++ V + + P E + IGK
Sbjct: 898 ESEKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTY 957
Query: 1419 AGRVLSVEPLSKRVEVTLKTSDSRTASQ 1446
+V+ ++ + EV+L D +
Sbjct: 958 PAKVIYIDYANITAEVSLLDHDVKQQYV 985
|
| >3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae} Length = 1030 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 3e-11
Identities = 9/77 (11%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Query: 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-DNIETIYRAGEKVKVKI 1513
G I+ +++R + T + + + + + + IY G+ K+
Sbjct: 903 FFKGSIIPVRVERFWHNDIICTTNS-EVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKV 961
Query: 1514 LKVDKEKRRISLGMKSS 1530
+ +D + +
Sbjct: 962 IYIDYANITAEVSLLDH 978
|
| >3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae} Length = 1030 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 4e-05
Identities = 14/101 (13%), Positives = 30/101 (29%), Gaps = 11/101 (10%)
Query: 1237 FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKN 1296
+ T + +G I+ R+ + ++ + V+
Sbjct: 888 GDEIFQSLTGESEKT-----FFKGSIIPVRVERFWHN--DIICTTNSEVECVVNAQRHAG 940
Query: 1297 ICVSDPLSG-YDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1336
+ P + Y+ G+ KV+ I E+SL
Sbjct: 941 AQLRRPANEIYEIGKTYPAKVIYIDYA---NITAEVSLLDH 978
|
| >3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae} Length = 1030 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 4e-05
Identities = 8/79 (10%), Positives = 27/79 (34%), Gaps = 3/79 (3%)
Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK-FKVGAELV 550
+ G ++ +V I V+ + + ++ +P + +++G
Sbjct: 899 SEKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYP 958
Query: 551 FRVLGV--KSKRITVTHKK 567
+V+ + + V+
Sbjct: 959 AKVIYIDYANITAEVSLLD 977
|
| >3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae} Length = 1030 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 5e-05
Identities = 8/77 (10%), Positives = 23/77 (29%), Gaps = 1/77 (1%)
Query: 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ-RADLSKTYYVGQSVRSNI 816
S++ V + + Q R ++ Y +G++ + +
Sbjct: 902 TFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKV 961
Query: 817 LDVNSETGRITLSLKQS 833
+ ++ +SL
Sbjct: 962 IYIDYANITAEVSLLDH 978
|
| >3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae} Length = 1030 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 6e-04
Identities = 6/69 (8%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS-MYHVGQVVKCRIMSSIPASRR 649
+ + + + V+ P++ +Y +G+ +++ A+
Sbjct: 911 VRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANIT 970
Query: 650 INLSFMMKP 658
+S +
Sbjct: 971 AEVS--LLD 977
|
| >3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae} Length = 1030 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 7e-04
Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 1/106 (0%)
Query: 311 LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQH 370
L G S G ++ RV+ N ++ + + V+ Y
Sbjct: 895 LTGESEKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIG 954
Query: 371 KKVNARILFVDPTSRAVGLTLNPY-LLHNRAPPSHVKVGDIYDQSK 415
K A+++++D + ++L + + P S+ K I+D +
Sbjct: 955 KTYPAKVIYIDYANITAEVSLLDHDVKQQYVPISYSKDPSIWDLKQ 1000
|
| >3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae} Length = 1219 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 2e-13
Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 1/88 (1%)
Query: 1360 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE-FPIGKLV 1418
E + I+ V+ + +++ V + + P E + IGK
Sbjct: 895 ESEKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTY 954
Query: 1419 AGRVLSVEPLSKRVEVTLKTSDSRTASQ 1446
+V+ ++ + EV+L D +
Sbjct: 955 PAKVIYIDYANITAEVSLLDHDVKQQYV 982
|
| >3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae} Length = 1219 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 3e-11
Identities = 12/100 (12%), Positives = 33/100 (33%), Gaps = 2/100 (2%)
Query: 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN-IETIYRAGEKVKVKI 1513
G I+ +++R + T + + + + + + IY G+ K+
Sbjct: 900 FFKGSIIPVRVERFWHNDIICTTNS-EVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKV 958
Query: 1514 LKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEE 1553
+ +D + + K + S + + +E
Sbjct: 959 IYIDYANITAEVSLLDHDVKQQYVPISYSKDPSIWDLKQE 998
|
| >3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae} Length = 1219 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 3e-05
Identities = 10/85 (11%), Positives = 30/85 (35%), Gaps = 3/85 (3%)
Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK-FKVGAELV 550
+ G ++ +V I V+ + + ++ +P + +++G
Sbjct: 896 SEKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYP 955
Query: 551 FRVLGV--KSKRITVTHKKTLVKSK 573
+V+ + + V+ VK +
Sbjct: 956 AKVIYIDYANITAEVSLLDHDVKQQ 980
|
| >3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae} Length = 1219 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 6e-05
Identities = 21/152 (13%), Positives = 45/152 (29%), Gaps = 11/152 (7%)
Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSG-YDEGQFVKCK 1315
+G I+ R+ + ++ + V+ + P + Y+ G+ K
Sbjct: 900 FFKGSIIPVRVERFWHN--DIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAK 957
Query: 1316 VLEISRTVRGTFHVELSLRSS----LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
V+ I E+SL S + D+ + E+ L
Sbjct: 958 VIYID---YANITAEVSLLDHDVKQQYVPISYSKDPSIWDLKQELEDAEEERKLMMAEAR 1014
Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1403
V + + + + A+ L + G
Sbjct: 1015 AKRTHRVINHPYYFPFNGR-QAEDYLRSKERG 1045
|
| >3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae} Length = 1219 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 7e-05
Identities = 7/76 (9%), Positives = 22/76 (28%), Gaps = 1/76 (1%)
Query: 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD-LSKTYYVGQSVRSNIL 817
S++ V + + Q ++ Y +G++ + ++
Sbjct: 900 FFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVI 959
Query: 818 DVNSETGRITLSLKQS 833
++ +SL
Sbjct: 960 YIDYANITAEVSLLDH 975
|
| >3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae} Length = 1219 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 7e-04
Identities = 7/72 (9%), Positives = 23/72 (31%), Gaps = 3/72 (4%)
Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS-MYHVGQVVKCRIMSSIPA 646
I + + + + V+ P++ +Y +G+ +++ A
Sbjct: 905 IIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYA 964
Query: 647 SRRINLSFMMKP 658
+ +S +
Sbjct: 965 NITAEVS--LLD 974
|
| >2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 4e-13
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 1457 VGDIVIGQIKRVESYGLFITIENT--NLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKI 1513
+GDI G++ + +G F+ +E GL H+SEL E V N+ + G++VKVK+
Sbjct: 12 IGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKV 71
Query: 1514 LKVDKEKRRISLGMK 1528
L + SL MK
Sbjct: 72 LSFT--GTKTSLSMK 84
|
| >2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 9e-05
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE----IVKPGKKFKVGAELV 550
+ G + GKV ++ FG VQ G K L H+SE + G +
Sbjct: 9 EPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVK 68
Query: 551 FRVLGVKSKRITVTHK 566
+VL + +++ K
Sbjct: 69 VKVLSFTGTKTSLSMK 84
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.0 bits (173), Expect = 3e-12
Identities = 97/712 (13%), Positives = 181/712 (25%), Gaps = 230/712 (32%)
Query: 366 DYNQHKKVNARILFV-------DPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQ-SKVV 417
+ +H+ IL V + + V L S ++ I V
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL-------SKEEIDHIIMSKDAVS 62
Query: 418 RVDRGLGLLLDIPSTPVST-------PAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG- 469
R LL V Y + + E R+ + R R+
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 470 -----------FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGK-VIAVD---SFGA 514
+ L +L+ V G++ GK +A+D S+
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRP-AKNVLID-----GVLGSGKTWVALDVCLSYKV 176
Query: 515 IVQFPGGV----KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLV 570
+ + C P +++ +K + + S I + +
Sbjct: 177 QCKMDFKIFWLNLKNCNSPE----TVLEMLQKLLYQIDPNWTSRSDHSSNIK--LRIHSI 230
Query: 571 KSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY 630
+++L RL+ + Y L L +
Sbjct: 231 QAEL----------RRLLKS-------------KPY-------ENCLLVLLNVQNAKAWN 260
Query: 631 HVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVI 690
+ C+I+ + TR V D ++
Sbjct: 261 AFN--LSCKILLT---------------TR----F--------KQVTDFLSAATTTH--- 288
Query: 691 AKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ 750
I +H + L E +LL KY L Q
Sbjct: 289 --------ISLDHHSMTLTPD---------------------EVKSLL--LKY-LDCRPQ 316
Query: 751 QLPSDASHIHPNSVVHGYVCNIIETGCFVR-FLGRLTGF---------APRSKAVDGQRA 800
LP + +P +II +R L + +++
Sbjct: 317 DLPREVLTTNP------RRLSII--AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 801 DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF----LLEEK---- 852
+ + SV + T LSL +D + L+E++
Sbjct: 369 AEYRKMFDRLSVFPP--SAHIPTI--LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 853 ---IAMLQ-SSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD--VYGFITH 906
I + K + I+ K +S+D + D Y I H
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP-----PYLDQYFYSHIGH 479
Query: 907 HQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFID-RFREANSNRQAQKKKRKREAS 965
H L + + L + VF+D RF E K + +++
Sbjct: 480 H-----------------LKNIEHPERMTL-FRMVFLDFRFLEQ---------KIRHDST 512
Query: 966 KDLGVHQTVNAIVEIVK-ENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFL 1016
+N + ++ + Y+ + P+Y V+ FL
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYE-----RLVNAI-------LDFL 552
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.5 bits (156), Expect = 3e-10
Identities = 105/686 (15%), Positives = 187/686 (27%), Gaps = 228/686 (33%)
Query: 21 KASKNQFKNSKKQINDAVEA--QDLALPPD-DDVPVFPRGGGHSLTQRERDEIHAEVDAE 77
+ ++Q++ K ++ +A + D DV P+ L++ E D I DA
Sbjct: 10 ETGEHQYQY-KDILSVFEDAFVDNF----DCKDVQDMPKS---ILSKEEIDHIIMSKDAV 61
Query: 78 ------F--------EAVER---GLHKKN--------KKKKKKTERKANETVDDLGSLFG 112
F E V++ + + N K ++++ ++ L+
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 113 DG---ISGKLPRYANKITLKN-----------ISAGM----KLWGVVAEV-NEKDLVICL 153
D + R + L+ + G+ K W V +V + +
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYKVQCKM 180
Query: 154 PGG-----LRGLARAADALDPI------LDNEIEANEDNLLPTIFHVGQLVSCIVLQLDD 202
L+ L+ + +D + D+ I L++
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN-----------IKLRIHS 229
Query: 203 DKKEIGKRKIWLSLRL--SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGF 260
+ E+ R++ S LL L VQ A F L
Sbjct: 230 IQAEL--RRLLKSKPYENCLLV----LLNVQNAKAWNA-------------FNLSCKILL 270
Query: 261 LPRNNLAENSGIDVKPGLLLQGVVRSID-RTRKVVYLSSDPDTVSKCVTKDL--K--GIS 315
R + V + T + L T++ K L K
Sbjct: 271 TTRF----------------KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 316 IDLLVPGMMVST--RVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTT--NWKNDYNQHK 371
L P +++T R SI+ + T NWK+ N K
Sbjct: 315 PQDL-PREVLTTNPRRLSII--AESIR----------------DGLATWDNWKH-VNCDK 354
Query: 372 KVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPS 431
++ L P +D+ V IP+
Sbjct: 355 LTTIIESSLN--------VLEPAEYRKM-----------FDRLSVFPPS------AHIPT 389
Query: 432 TPVST----PAYVTISDVAEEEVRK--LEKKYKEGSCVRVRILGFRHLEGLATGILKASA 485
+S + V + + +EK+ KE + I +LE LK
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES---TISIPS-IYLE------LKVKL 439
Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP-----------HMSEF 534
E H + I VD + F L P H+
Sbjct: 440 -ENEYALH-----------RSI-VDHYNIPKTFDS--DDLIPPYLDQYFYSHIGHHLKNI 484
Query: 535 EIVKPGKKFKVGAELV--FRVLGVKSKRI-TVTHKKTLVKSKLAILSSYAEATDRLITHG 591
E ++ + + FR L K + T + + + L L Y
Sbjct: 485 E---HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP--------- 532
Query: 592 WITKIEKHGCFVRFYNGVQGFAPRSE 617
+I + R N + F P+ E
Sbjct: 533 YICD--NDPKYERLVNAILDFLPKIE 556
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 8e-09
Identities = 98/675 (14%), Positives = 198/675 (29%), Gaps = 194/675 (28%)
Query: 941 VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 1000
VF D F + + Q + + ++ + + + + L +L +
Sbjct: 24 VFEDAFVDNFDCKDVQDMPKSILSKEE--IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81
Query: 1001 SVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS 1060
V + + FL S I T PS T +R + +
Sbjct: 82 FVEEVLRINYK---FL--MSPIKTEQRQPSM--------------MTRMYIEQRDRLYN- 121
Query: 1061 YDVGSLVQAEITEIKP--------LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFK 1112
D + ++ ++P LELR + G + K+ V ++ ++K
Sbjct: 122 -DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS-----GKTWVALDVCLSYK 175
Query: 1113 IGQTVTARI----IAKSNKPDMKKSFLWELS--IKPSMLTVSEIGSKLLFEECDVSIGQR 1166
+ + +I + N P+ L +L I P+ + S+ S
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN------------- 222
Query: 1167 VTGYVYKVDNEWALLTISRHLKAQ-----LFILDSAYEPSELQEFQRRFHI-----GKAV 1216
K+ + R LK++ L +L + F I K V
Sbjct: 223 -----IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 1217 TGHVLSINKEKKLLRLVLRPFQDGIS-DKTVDISNDNMQTFIHEGDIVGGRISKI----- 1270
T LS + L ++ D+ + + + R +
Sbjct: 278 T-DFLSAATTT---HISLDHHSMTLTPDEVKSL-------LL---KYLDCRPQDLPREVL 323
Query: 1271 ------LSGVGGLVVQIGPHL---YGRVHFTELKNI---CVS--DP---------LSGYD 1307
LS + ++ G + V+ +L I ++ +P LS +
Sbjct: 324 TTNPRRLSIIAES-IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 1308 EGQFVKCKVLEI-----SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE-- 1360
+ +L + ++ +L S ++ ++ + P +LE
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI------PSIYLELK 436
Query: 1361 -KIEDLSP--NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY-----------VE 1406
K+E+ IV Y + + D+ L+ D Y +E
Sbjct: 437 VKLENEYALHRSIVDHY-----------NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 1407 SPEK--EFPIGKLVAGRVLSVEPLSKR-VEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1463
PE+ F V L R +E ++ + + I N
Sbjct: 486 HPERMTLFR-------MVF----LDFRFLEQKIRHDSTAWNASGSILNT----------- 523
Query: 1464 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR-- 1521
+++++ Y +I +N L +D + + E L K
Sbjct: 524 -LQQLKFYKPYIC-DNDP-----KYERLVNAILDFLP---KIEEN-----LICSKYTDLL 568
Query: 1522 RISLGMKSSYFKNDA 1536
RI+L + +A
Sbjct: 569 RIALMAEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 1e-08
Identities = 95/685 (13%), Positives = 200/685 (29%), Gaps = 194/685 (28%)
Query: 1298 CVSDPLSGYDEGQFVK---CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDL--STDV 1352
D LS +++ FV CK V+ +S L S + S D
Sbjct: 17 QYKDILSVFED-AFVDNFDCK------------DVQDMPKSIL---SKEEIDHIIMSKDA 60
Query: 1353 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1412
+ L +VQ +V+ V + K L+S + E +
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRI----------NYKFLMSPIKT---EQRQPSM 107
Query: 1413 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN-LSNLHVGDIVI-------G- 1463
+ R + L +V K + SR ++ L L V+ G
Sbjct: 108 MTRMYIEQR----DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 1464 -----------QIKRVESYGLF-ITIENTN--------LVGLCHVSELSEDHVDNIETIY 1503
+++ + +F + ++N N L L + ++ + +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY--QIDPNWTSRSDHSS 221
Query: 1504 RAGEKVKVKILKVDKEKRRISLGMKSSYFKND---ADNLQMSSEEESDEAIEE------- 1553
+K++I + E RR+ +KS ++N N+Q + +A
Sbjct: 222 N----IKLRIHSIQAELRRL---LKSKPYENCLLVLLNVQ------NAKAWNAFNLSCKI 268
Query: 1554 -VGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESR---ASVPPLEVNLDDEQPDMD 1609
+ + + S+ + ++ L E + L+ D ++
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMT---LTPDEVKSLLLKY--LDCRPQDLPREVL 323
Query: 1610 NG----ISQNQGHTDEAKTIDEKNNR--HAKKKEKEEREQEIRAAEERLLEKDAPRTPDE 1663
+S A++I + + K ++ I ++ L P E
Sbjct: 324 TTNPRRLSI------IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL-------EPAE 370
Query: 1664 FERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL 1723
+ ++ + + I L I W F++
Sbjct: 371 YRKM-------------FDRLSVFPPSAH----IPTILLSLI-----------W---FDV 399
Query: 1724 ENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLY-----ERTEQNKLADELL--YKMI 1776
V K+ + +L PK+ +++ +Y + + L ++ Y +
Sbjct: 400 IKS---DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 1777 KKFKHS--CKVWLRR------VQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828
K F +L + L + + + L +F+ Q
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF------RFLEQKIR-- 508
Query: 1829 FKNGVADRGRSMFEGILSE---Y--------PKRTDLWSIYLDQEIRLGDVDLIRGLFER 1877
+ A L + Y PK L + LD ++ + +LI +
Sbjct: 509 -HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE-NLICSKYTD 566
Query: 1878 AISLSLPPKKMKFLFKKYLEYEKSV 1902
+ ++L + + E K V
Sbjct: 567 LLRIALMAEDEAI----FEEAHKQV 587
|
| >3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A Length = 785 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 1e-10
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 7/88 (7%)
Query: 1446 QSEINNLSNLHVGDIVIGQIKRVESYGLFITI---ENTNLVGLCHVSELSEDHVDNIETI 1502
Q + +L +L G ++ G + V ++G F+ I ++ GL H+S LSE V + +
Sbjct: 643 QEGVESLKDLKPGMVLEGVVTNVTNFGAFVDIGVHQD----GLVHISALSEKFVKDPYEV 698
Query: 1503 YRAGEKVKVKILKVDKEKRRISLGMKSS 1530
+AG+ VKVK+++VD + R+ L M+ S
Sbjct: 699 VKAGDIVKVKVMEVDIPRNRVGLSMRMS 726
|
| >3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A Length = 785 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 2e-10
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 1360 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1419
E ++DL P M+++G V NVT+ G F+ + D V +S LS+ +V+ P + G +V
Sbjct: 647 ESLKDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVK 706
Query: 1420 GRVLSVEPLSKRVEVTLKTSDSRTASQSE 1448
+V+ V+ RV ++++ SD+
Sbjct: 707 VKVMEVDIPRNRVGLSMRMSDTPGEKVEG 735
|
| >3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A Length = 723 | Back alignment and structure |
|---|
Score = 65.2 bits (160), Expect = 1e-10
Identities = 26/103 (25%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 1431 RVEVTLKTSDSRTASQSEINNLSN-LHVGDIVIGQIKRVESYGLFITI----ENTNLVGL 1485
V++ + + I ++ + VG + G++ R+ +G F+ I E GL
Sbjct: 600 TVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKE-----GL 654
Query: 1486 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
H+S++++ V+ + + G++V VK+L+VD+ + RI L +K
Sbjct: 655 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIK 696
|
| >4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A Length = 726 | Back alignment and structure |
|---|
Score = 65.2 bits (160), Expect = 2e-10
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 1431 RVEVTLKTSDSRTASQSEINNL-SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1489
V+V+ A+ I ++ VG I G++ +V +G F+ GL HVS
Sbjct: 610 VVKVSASDGAKIKAAIDWIKSITDEAEVGKIYDGKVVKVVDFGAFVNFFG-AKDGLVHVS 668
Query: 1490 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
++S + V + + G+ VKVK+L D + + L MK
Sbjct: 669 QISNERVAKPSDVLKEGQMVKVKLLGFDD-RGKTKLSMK 706
|
| >1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A Length = 757 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 4e-09
Identities = 26/134 (19%), Positives = 66/134 (49%), Gaps = 25/134 (18%)
Query: 1431 RVEVTLKTSDSRTASQSEINNLSNLH---VGDIVIGQIKRVESYGLFITI----ENTNLV 1483
+ + + A+++ IN ++N VG+ ++G + + ++G F+++ +
Sbjct: 638 TIYIGAADGPAAEAARATINGIANPTSPEVGERILGSVVKTTTFGAFVSLLPGKD----- 692
Query: 1484 GLCHVSELSED----HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1539
GL H+S++ + V+N+E + G+KV+V+I ++D + ++SL
Sbjct: 693 GLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEID-SRGKLSLIPV--------IEG 743
Query: 1540 QMSSEEESDEAIEE 1553
+ ++ +E + E+
Sbjct: 744 EEAASDEKKDDAEQ 757
|
| >3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae} Length = 285 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 7e-08
Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 17/121 (14%)
Query: 1430 KRVEVTLKTSDSR-----TASQSEINNLSN----LHVGDIVIGQIKRVESYGLFITIENT 1480
++ + L+ A Q + L+ + R++ G F+ +
Sbjct: 116 DQLYIRLEVDKKDRIWGLLAYQEDFQRLARPAYNNMQNQNWPAIVYRLKLSGTFVYLPEN 175
Query: 1481 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1540
N++G H SE + R G+ + +++ + R ++L +K F+ ++ Q
Sbjct: 176 NMLGFIHPSERYAE--------PRLGQVLDARVIGFREVDRTLNLSLKPRSFEMLENDAQ 227
Query: 1541 M 1541
M
Sbjct: 228 M 228
|
| >3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae} Length = 285 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 7e-06
Identities = 35/173 (20%), Positives = 58/173 (33%), Gaps = 17/173 (9%)
Query: 496 VKPGMVVKGKVIAVD-SFGAIVQFPGGVK-ALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
G+V V G V K + L + E + + P K G +L R+
Sbjct: 67 ATQDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVSLDILPELKELWP----KKGDQLYIRL 122
Query: 554 LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG-VQGF 612
K RI +LA + + +++ G FV + GF
Sbjct: 123 EVDKKDRIWGLLAYQEDFQRLARPAYNNMQNQ--NWPAIVYRLKLSGTFVYLPENNMLGF 180
Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
SE + +GQV+ R++ R +NLS + + E+D
Sbjct: 181 IHPSER--------YAEPRLGQVLDARVIGFREVDRTLNLSLKPRSFEMLEND 225
|
| >3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae} Length = 285 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 5e-05
Identities = 38/242 (15%), Positives = 70/242 (28%), Gaps = 41/242 (16%)
Query: 593 ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
I FV+ +G + E + VG VK +++ L
Sbjct: 14 IIDENDRFYFVQ-KDGQTYALAKEEGQ----------HTVGDTVKGFAY--TDMKQKLRL 60
Query: 653 SFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL-EHA 711
+ + + + V +V V V +P + + L
Sbjct: 61 TTLEVTATQDQFGWGR-------VTEVRKDLGVFVDT--------GLPDKEIVVSLDILP 105
Query: 712 TVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCN 771
+ + K G + L +D + L A +L A + N V
Sbjct: 106 ELKELWPKKGDQLYIRLEVDKKDRIWGLLAYQEDFQ---RLARPAYNNMQNQNWPAIVYR 162
Query: 772 IIETGCFVRFL-GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
+ +G FV + GF S + +GQ + + ++ + LSL
Sbjct: 163 LKLSGTFVYLPENNMLGFIHPS--------ERYAEPRLGQVLDARVIGFREVDRTLNLSL 214
Query: 831 KQ 832
K
Sbjct: 215 KP 216
|
| >4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E Length = 180 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 6e-07
Identities = 21/91 (23%), Positives = 49/91 (53%), Gaps = 17/91 (18%)
Query: 1456 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------DNIETIYR 1504
V ++V G++ +V++YG+F+ + + GL H+S++++D + + + + +
Sbjct: 80 VVQEVVEGEVLQVDNYGVFVNLGP--MDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQ 137
Query: 1505 AGEKVKVKILKVDKEKR----RISLGMKSSY 1531
G+KV+ +++ V RI+L M+ Y
Sbjct: 138 KGDKVRARVISVASTVTGRLPRIALTMRQPY 168
|
| >2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A Length = 644 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 1e-06
Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 14/82 (17%)
Query: 1456 HVGDIVI--GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD------------NIET 1501
G +I + G+ + + + + L + ET
Sbjct: 557 KAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGET 616
Query: 1502 IYRAGEKVKVKILKVDKEKRRI 1523
+Y+ + + V I +V E R I
Sbjct: 617 VYKVTDVIDVTIAEVRMETRSI 638
|
| >2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A Length = 469 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 6e-05
Identities = 5/70 (7%), Positives = 16/70 (22%), Gaps = 13/70 (18%)
Query: 1456 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1515
+ + + I + + G ++V+
Sbjct: 402 QPERVWDAVVVDRRGAQATLLIPDLAFDVQVNTPAA-------------PGTALQVQFAD 448
Query: 1516 VDKEKRRISL 1525
+D + R+
Sbjct: 449 IDLPQMRVRA 458
|
| >3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A Length = 179 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 8e-05
Identities = 16/87 (18%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 1440 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI---------ENTNLVGLCHVSE 1490
R A I+ + + GD+V+G++ + + I + + +G+ HVS
Sbjct: 40 KDRVAKVESISPIPEIVKGDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSN 99
Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVD 1517
+ E +V I + +K +++ +
Sbjct: 100 VDEGYVKEISEAVGYLDILKARVIGDN 126
|
| >3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 172 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 6e-04
Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 14/93 (15%)
Query: 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV----------DNIE 1500
L G++V + V G F I N + D +
Sbjct: 78 VLWRPFRGEVVDAIVTTVNKMGFFANIGPLN--VFVSSHLVPPDMKFDPTANPPNYSGED 135
Query: 1501 TIYRAGEKVKVKILKVDKEKRRIS--LGMKSSY 1531
+ G V++KI+ + I MK Y
Sbjct: 136 QVIEKGSNVRLKIVGTRTDATEIFAIATMKEDY 168
|
| >2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} Length = 977 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 6e-04
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 20/86 (23%)
Query: 1463 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------------DNIETIYRA 1505
G + +V + G+ + + + GL + L+ED +
Sbjct: 892 GYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYV 951
Query: 1506 GEKVKVKILKVDKE---KRRISLGMK 1528
+KV+V++ V KR+ L +K
Sbjct: 952 FDKVEVQVRSVMDPITSKRKAELLLK 977
|
| >2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 Length = 760 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 8e-04
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 20/86 (23%)
Query: 1463 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------------DNIETIYRA 1505
G + +V + G+ + + + GL + L+ED +
Sbjct: 675 GYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYV 734
Query: 1506 GEKVKVKILKVDKE---KRRISLGMK 1528
+KV+V++ V KR+ L +K
Sbjct: 735 FDKVEVQVRSVMDPITSKRKAELLLK 760
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1924 | |||
| 3go5_A | 285 | Multidomain protein with S1 RNA-binding domains; s | 99.96 | |
| 3go5_A | 285 | Multidomain protein with S1 RNA-binding domains; s | 99.94 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.88 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.88 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.85 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.84 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.83 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.79 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.76 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.76 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.74 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.74 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.73 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.72 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.72 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.71 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.71 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.7 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.7 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.7 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.69 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.68 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.67 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.66 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.64 | |
| 1kl9_A | 182 | Eukaryotic translation initiation factor 2 subuni; | 99.62 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.62 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.61 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.61 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.6 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.59 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.59 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.58 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.58 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.58 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.58 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.57 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.57 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.55 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.54 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.53 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.52 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.52 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.52 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.49 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.49 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.48 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.47 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.47 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.46 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.45 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.44 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.43 | |
| 1kl9_A | 182 | Eukaryotic translation initiation factor 2 subuni; | 99.42 | |
| 2khj_A | 109 | 30S ribosomal protein S1; OB fold, acetylation, ph | 99.42 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.42 | |
| 1luz_A | 88 | Protein K3, protein K2; stranded anti-parallel bet | 99.4 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.4 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.4 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.39 | |
| 2khi_A | 115 | 30S ribosomal protein S1; acetylation, phosphoprot | 99.39 | |
| 2k52_A | 80 | Uncharacterized protein MJ1198; metal-binding, zin | 99.38 | |
| 2a19_A | 175 | EIF-2- alpha, eukaryotic translation initiation fa | 99.38 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.37 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.37 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.37 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.37 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.36 | |
| 2a19_A | 175 | EIF-2- alpha, eukaryotic translation initiation fa | 99.35 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.35 | |
| 2k4k_A | 130 | GSP13, general stress protein 13; cytoplasm, stres | 99.35 | |
| 2khi_A | 115 | 30S ribosomal protein S1; acetylation, phosphoprot | 99.34 | |
| 1q8k_A | 308 | Eukaryotic translation initiation factor 2 subunit | 99.34 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.34 | |
| 1wi5_A | 119 | RRP5 protein homolog; S1 domain, OB-fold, structur | 99.33 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.32 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.3 | |
| 2khj_A | 109 | 30S ribosomal protein S1; OB fold, acetylation, ph | 99.3 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.29 | |
| 2cqo_A | 119 | Nucleolar protein of 40 kDa; S1 domain, OB-fold, s | 99.29 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.29 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.28 | |
| 2eqs_A | 103 | ATP-dependent RNA helicase DHX8; S1 domain, OB-fol | 99.27 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.26 | |
| 1luz_A | 88 | Protein K3, protein K2; stranded anti-parallel bet | 99.22 | |
| 2k4k_A | 130 | GSP13, general stress protein 13; cytoplasm, stres | 99.22 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.21 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.21 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.2 | |
| 3aev_A | 275 | Translation initiation factor 2 subunit alpha; pro | 99.2 | |
| 2k52_A | 80 | Uncharacterized protein MJ1198; metal-binding, zin | 99.2 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.2 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.19 | |
| 1q8k_A | 308 | Eukaryotic translation initiation factor 2 subunit | 99.19 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.17 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.16 | |
| 2cqo_A | 119 | Nucleolar protein of 40 kDa; S1 domain, OB-fold, s | 99.16 | |
| 2eqs_A | 103 | ATP-dependent RNA helicase DHX8; S1 domain, OB-fol | 99.15 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.15 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.13 | |
| 1wi5_A | 119 | RRP5 protein homolog; S1 domain, OB-fold, structur | 99.12 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.12 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.12 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.12 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.12 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.11 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.11 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.11 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.1 | |
| 3aev_A | 275 | Translation initiation factor 2 subunit alpha; pro | 99.09 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.09 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.08 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.08 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.07 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.07 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.06 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.05 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.05 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.05 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.01 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.01 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.0 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.99 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.98 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.96 | |
| 3cw2_C | 266 | Translation initiation factor 2 subunit alpha; AIF | 98.96 | |
| 3psi_A | 1219 | Transcription elongation factor SPT6; nucleus; 3.3 | 98.92 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.92 | |
| 1e3p_A | 757 | Guanosine pentaphosphate synthetase; polyribonucle | 98.91 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.91 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.91 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 98.9 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.89 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.88 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.87 | |
| 3cdi_A | 723 | Polynucleotide phosphorylase; mRNA turnover, RNAse | 98.87 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.86 | |
| 3bzc_A | 785 | TEX; helix-turn-helix, helix-hairpin-helix, S1 dom | 98.86 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 98.85 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.83 | |
| 3cw2_C | 266 | Translation initiation factor 2 subunit alpha; AIF | 98.83 | |
| 1go3_E | 187 | DNA-directed RNA polymerase subunit E; transferase | 98.83 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.82 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.81 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.81 | |
| 3psf_A | 1030 | Transcription elongation factor SPT6; nucleus; 2.5 | 98.81 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 98.8 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.8 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.79 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.79 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.79 | |
| 4aid_A | 726 | Polyribonucleotide nucleotidyltransferase; transfe | 98.78 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.77 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.76 | |
| 3psi_A | 1219 | Transcription elongation factor SPT6; nucleus; 3.3 | 98.76 | |
| 2nn6_I | 209 | 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, | 98.76 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.75 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 98.75 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.75 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.74 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.74 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.74 | |
| 4ayb_E | 180 | DNA-directed RNA polymerase; transferase, multi-su | 98.73 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.72 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.71 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.71 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.7 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.7 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 98.7 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.69 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.69 | |
| 3bzc_A | 785 | TEX; helix-turn-helix, helix-hairpin-helix, S1 dom | 98.69 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.68 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.68 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.66 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.65 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.65 | |
| 2bh8_A | 101 | 1B11; transcription, molecular evolution, unique a | 98.65 | |
| 1e3p_A | 757 | Guanosine pentaphosphate synthetase; polyribonucle | 98.64 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 98.64 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.63 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.63 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.63 | |
| 3m7n_A | 179 | Putative uncharacterized protein AF_0206; exosome, | 98.62 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.62 | |
| 1y14_B | 171 | B16, RPB7, DNA-directed RNA polymerase II 19 kDa p | 98.61 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.61 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.61 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.6 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.59 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.59 | |
| 2b8k_G | 215 | B16, DNA-directed RNA polymerase II 19 kDa polypep | 98.59 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.59 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.58 | |
| 3psf_A | 1030 | Transcription elongation factor SPT6; nucleus; 2.5 | 98.58 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.58 | |
| 1go3_E | 187 | DNA-directed RNA polymerase subunit E; transferase | 98.58 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 98.58 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.56 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.56 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.56 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.56 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.55 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.55 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.55 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.54 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.54 | |
| 2c35_B | 172 | Human RPB7, DNA-directed RNA polymerase II 19 kDa | 98.53 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.53 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.52 | |
| 4aid_A | 726 | Polyribonucleotide nucleotidyltransferase; transfe | 98.52 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.51 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.5 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.49 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.49 | |
| 2z0s_A | 235 | Probable exosome complex RNA-binding protein 1; al | 98.48 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.46 | |
| 3cdi_A | 723 | Polynucleotide phosphorylase; mRNA turnover, RNAse | 98.45 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.45 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 98.45 | |
| 4ayb_E | 180 | DNA-directed RNA polymerase; transferase, multi-su | 98.44 | |
| 2nn6_I | 209 | 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, | 98.43 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.41 | |
| 2je6_I | 251 | RRP4, exosome complex RNA-binding protein 1; nucle | 98.4 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.4 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.39 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.38 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.38 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.37 | |
| 3h0g_G | 172 | DNA-directed RNA polymerase II subunit RPB7; trans | 98.37 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.35 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.34 | |
| 2b8k_G | 215 | B16, DNA-directed RNA polymerase II 19 kDa polypep | 98.34 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.33 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.33 | |
| 1y14_B | 171 | B16, RPB7, DNA-directed RNA polymerase II 19 kDa p | 98.33 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.33 | |
| 2ba0_A | 229 | Archeal exosome RNA binding protein RRP4; RNAse PH | 98.32 | |
| 3m7n_A | 179 | Putative uncharacterized protein AF_0206; exosome, | 98.31 | |
| 2z0s_A | 235 | Probable exosome complex RNA-binding protein 1; al | 98.31 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.27 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.23 | |
| 2c35_B | 172 | Human RPB7, DNA-directed RNA polymerase II 19 kDa | 98.23 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.23 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.21 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.17 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.17 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.15 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.15 | |
| 2je6_I | 251 | RRP4, exosome complex RNA-binding protein 1; nucle | 98.15 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.14 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.09 | |
| 2ba0_A | 229 | Archeal exosome RNA binding protein RRP4; RNAse PH | 98.09 | |
| 1hh2_P | 344 | NUSA, N utilization substance protein A; transcrip | 98.08 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.07 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.04 | |
| 3h0g_G | 172 | DNA-directed RNA polymerase II subunit RPB7; trans | 98.04 | |
| 2bh8_A | 101 | 1B11; transcription, molecular evolution, unique a | 98.01 | |
| 1hh2_P | 344 | NUSA, N utilization substance protein A; transcrip | 98.0 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.99 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.98 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.96 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.92 | |
| 2id0_A | 644 | Exoribonuclease 2; RNAse, exonuclease, hydrolyase, | 97.89 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.88 | |
| 3ayh_B | 203 | DNA-directed RNA polymerase III subunit RPC8; tran | 97.78 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.78 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.75 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.7 | |
| 2ckz_B | 218 | C25, DNA-directed RNA polymerase III 25 KD polypep | 97.63 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.49 | |
| 2vnu_D | 760 | Exosome complex exonuclease RRP44; hydrolase-RNA c | 97.49 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.47 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.47 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.46 | |
| 2nn6_H | 308 | Exosome complex exonuclease RRP4; RNA, exosome, PM | 97.45 | |
| 2wp8_J | 977 | Exosome complex exonuclease DIS3; nucleus, hydrola | 97.44 | |
| 2bx2_L | 517 | Ribonuclease E, RNAse E; RNA-binding, RNA turnover | 97.44 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.38 | |
| 2nn6_H | 308 | Exosome complex exonuclease RRP4; RNA, exosome, PM | 97.35 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.34 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.33 | |
| 2id0_A | 644 | Exoribonuclease 2; RNAse, exonuclease, hydrolyase, | 97.32 | |
| 3ayh_B | 203 | DNA-directed RNA polymerase III subunit RPC8; tran | 97.32 | |
| 1k0r_A | 366 | NUSA; two component arrangement, S1 domain, two K- | 97.29 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.28 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.28 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 97.23 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.22 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 97.18 | |
| 2bx2_L | 517 | Ribonuclease E, RNAse E; RNA-binding, RNA turnover | 97.17 | |
| 2ckz_B | 218 | C25, DNA-directed RNA polymerase III 25 KD polypep | 97.17 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.16 | |
| 1k0r_A | 366 | NUSA; two component arrangement, S1 domain, two K- | 97.14 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 97.09 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.08 | |
| 2asb_A | 251 | Transcription elongation protein NUSA; protein-RNA | 97.07 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.06 | |
| 2asb_A | 251 | Transcription elongation protein NUSA; protein-RNA | 97.01 | |
| 2ja9_A | 175 | Exosome complex exonuclease RRP40; RNA-binding pro | 96.96 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.93 | |
| 2ja9_A | 175 | Exosome complex exonuclease RRP40; RNA-binding pro | 96.89 | |
| 4aez_C | 223 | MAD3, mitotic spindle checkpoint component MAD3; c | 96.89 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.87 | |
| 4aez_C | 223 | MAD3, mitotic spindle checkpoint component MAD3; c | 96.75 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 96.7 | |
| 2vnu_D | 760 | Exosome complex exonuclease RRP44; hydrolase-RNA c | 96.69 | |
| 2wvi_A | 164 | Mitotic checkpoint serine/threonine-protein kinase | 96.68 | |
| 2wp8_J | 977 | Exosome complex exonuclease DIS3; nucleus, hydrola | 96.66 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.45 | |
| 2wvi_A | 164 | Mitotic checkpoint serine/threonine-protein kinase | 96.16 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.04 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.85 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.77 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.27 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.14 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.02 | |
| 2nn6_G | 289 | Exosome complex exonuclease RRP40; RNA, exosome, P | 94.7 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 94.51 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 94.39 | |
| 2nn6_G | 289 | Exosome complex exonuclease RRP40; RNA, exosome, P | 94.19 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.36 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 92.61 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.61 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 90.67 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.75 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.31 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 88.78 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 88.19 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 87.48 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 87.26 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 86.44 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 86.05 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 85.61 | |
| 2r7d_A | 469 | Ribonuclease II family protein; structural genomic | 85.0 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 84.73 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 84.57 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 83.72 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 81.74 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 80.07 |
| >3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-28 Score=283.86 Aligned_cols=210 Identities=20% Similarity=0.135 Sum_probs=181.8
Q ss_pred CCCEEEEEEEEEecCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCEEEEEEEEEecccCCceEEEEeeecccc
Q 000176 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1338 (1924)
Q Consensus 1259 ~G~~v~g~V~~v~~~~~g~~V~l~~~~~G~v~~selsd~~~~~p~~~~~~G~~v~~~Vl~vd~~~~~~~~i~LSlr~~~~ 1338 (1924)
+|++++|+|++++++ |+||+++ +.+|++|.+|++ . ++|+.|+|+|+. |. .+++.+|++.+
T Consensus 6 ~G~~v~g~V~~~~~~--G~fv~~~-g~egllp~se~~-------~---~vGdevev~v~~-d~----~~r~iat~~~p-- 65 (285)
T 3go5_A 6 LASFIVGLIIDENDR--FYFVQKD-GQTYALAKEEGQ-------H---TVGDTVKGFAYT-DM----KQKLRLTTLEV-- 65 (285)
T ss_dssp TTEEEEEEEEEECSS--EEEEEET-TEEEEEEGGGCC-------C---CTTSEEEEEEEE-CT----TSCEEEECSCC--
T ss_pred CCCEEEEEEEEEECC--EEEEEcC-CeEEEEEHHHCc-------c---ccCCEEEEEEEE-CC----CCCEEEecccc--
Confidence 899999999999999 9999997 899999999993 2 699999999984 54 35677776432
Q ss_pred CCCCCCCCCCCCCCCCCcchhhhhccCCCCCEEEEEEEEEe-eceEEEEeCC-CcEEEEECccCCCcccCCCCccCCCCc
Q 000176 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFIMLSR-KLDAKVLLSNLSDGYVESPEKEFPIGK 1416 (1924)
Q Consensus 1339 ~~~~~~~~~~~~~~~~~~~~~~~~~~lk~G~~v~G~V~~v~-~~G~fV~l~~-~v~g~v~~selsd~~~~~~~~~f~~G~ 1416 (1924)
.+++|+++.|+|++++ ++|+||+++. +++||||+++++|.... .+++||
T Consensus 66 -------------------------~~~~G~~~~g~V~~v~~~~GaFVdiG~~~~d~lvp~sel~~~~~~----~~~~Gd 116 (285)
T 3go5_A 66 -------------------------TATQDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVSLDILPELKEL----WPKKGD 116 (285)
T ss_dssp -------------------------CSCSSSCEEEEEEEEETTTEEEEECSCTTCCEEEEGGGSCSSGGG----SCCTTC
T ss_pred -------------------------cccCCCEEEEEEEEEccCceEEEEECCCCcEEEEEHHHCCccccc----ccCCCC
Confidence 2679999999999999 7999999997 79999999999986443 357999
Q ss_pred EEEEEEEEEeCCCCEEEEEeecc-cccccchhccccccccCCCcEEEEEEEEeecceEEE-EEecCceeEEeeccccCcc
Q 000176 1417 LVAGRVLSVEPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI-TIENTNLVGLCHVSELSED 1494 (1924)
Q Consensus 1417 ~V~~kVl~vd~e~~ri~LSlk~~-~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV-~l~~~~v~gl~h~sels~~ 1494 (1924)
.|.++ +.+|+ ++||.+|+|+. ..+||. .....+++|++|+|+|+++++||+|| .+++ ++.||||+||+++
T Consensus 117 ~v~v~-l~iD~-~~Ri~ls~k~~~~~~~~~----~~~~~~~~G~~V~g~V~~i~~~G~fV~~i~~-g~~Glih~SEl~~- 188 (285)
T 3go5_A 117 QLYIR-LEVDK-KDRIWGLLAYQEDFQRLA----RPAYNNMQNQNWPAIVYRLKLSGTFVYLPEN-NMLGFIHPSERYA- 188 (285)
T ss_dssp EEEEE-EEECT-TSCEEEEECCHHHHHHHC----CCCCSCCTTCEEEEEEEEEETTEEEEEETTT-TEEEEECGGGCSS-
T ss_pred EEEEE-EEECC-CCcEEEEehhhhhcchhh----hhhhhCCCCCEEEEEEEEEeCCcEEEEEeCC-CeEEEEEHHHccc-
Confidence 99765 69998 79999999976 344443 24688999999999999999999999 9976 8999999999984
Q ss_pred cccCcccccCCCcEEEEEEEEEecCCCeeEEecccccc
Q 000176 1495 HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1532 (1924)
Q Consensus 1495 ~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s~~ 1532 (1924)
.+++||.|+|+|++||++++||+||+|+..+
T Consensus 189 -------~l~~Gd~v~~~V~~id~~d~kI~LSlk~~~~ 219 (285)
T 3go5_A 189 -------EPRLGQVLDARVIGFREVDRTLNLSLKPRSF 219 (285)
T ss_dssp -------CCCTTCEEEEEEEEEETTTTEEEEECSCCCC
T ss_pred -------cCCCCCEEEEEEEEEECCCCeEEEEeChhhh
Confidence 4899999999999999999999999999765
|
| >3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=261.50 Aligned_cols=225 Identities=17% Similarity=0.117 Sum_probs=191.9
Q ss_pred CCCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCCCCCCCCCCCCCCCEEEEEEEEEcCCCCEEEEEEeeCCCCccc
Q 000176 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 663 (1924)
Q Consensus 584 ~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~~ri~lS~k~~~~~~~~ 663 (1924)
.+|++..|+|+++.++|+||++ ++++||||.+++. . ++||.|.|.|+ .|.+ +|+.+|.+
T Consensus 5 ~~G~~v~g~V~~~~~~G~fv~~-~g~egllp~se~~-------~---~vGdevev~v~-~d~~-~r~iat~~-------- 63 (285)
T 3go5_A 5 NLASFIVGLIIDENDRFYFVQK-DGQTYALAKEEGQ-------H---TVGDTVKGFAY-TDMK-QKLRLTTL-------- 63 (285)
T ss_dssp TTTEEEEEEEEEECSSEEEEEE-TTEEEEEEGGGCC-------C---CTTSEEEEEEE-ECTT-SCEEEECS--------
T ss_pred cCCCEEEEEEEEEECCEEEEEc-CCeEEEEEHHHCc-------c---ccCCEEEEEEE-ECCC-CCEEEecc--------
Confidence 4799999999999999999999 5899999999993 1 89999999998 4764 56667753
Q ss_pred ccccCCCCEEEEEEEEEc-cCcEEEEEEecC-ceeEEEeCCcCCCCccchhhhccccCCCCeEeeEEEeecCCCeEEEEe
Q 000176 664 DDLVKLGSLVSGVVDVVT-PNAVVVYVIAKG-YSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741 (1924)
Q Consensus 664 ~~~~~~G~iv~g~V~~~~-~~g~~V~l~~~~-~~~g~i~~~~Lsd~~~~~~~~~~~~~~G~~i~~vl~id~~~~~i~ls~ 741 (1924)
.+.+++|+++.|+|++++ ++|+||.+ +. +.+|+||.++++... ..++++|+++...|.+|+ ++|+.+|+
T Consensus 64 ~p~~~~G~~~~g~V~~v~~~~GaFVdi--G~~~~d~lvp~sel~~~~------~~~~~~Gd~v~v~l~iD~-~~Ri~ls~ 134 (285)
T 3go5_A 64 EVTATQDQFGWGRVTEVRKDLGVFVDT--GLPDKEIVVSLDILPELK------ELWPKKGDQLYIRLEVDK-KDRIWGLL 134 (285)
T ss_dssp CCCSCSSSCEEEEEEEEETTTEEEEEC--SCTTCCEEEEGGGSCSSG------GGSCCTTCEEEEEEEECT-TSCEEEEE
T ss_pred cccccCCCEEEEEEEEEccCceEEEEE--CCCCcEEEEEHHHCCccc------ccccCCCCEEEEEEEECC-CCcEEEEe
Confidence 245789999999999999 79999999 65 699999999998643 136799999987778888 68999999
Q ss_pred ccc-ccchhccCCCCcCccCCCCEEEEEEEEEecCeEEE-EECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEe
Q 000176 742 KYS-LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV-RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819 (1924)
Q Consensus 742 K~s-l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV-~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~i 819 (1924)
|+. ..++|... .+.+++|+.+.|+|++++++|+|| .+.+++.||+|.|++++ .+++||.|+|+|++|
T Consensus 135 k~~~~~~~~~~~---~~~~~~G~~V~g~V~~i~~~G~fV~~i~~g~~Glih~SEl~~--------~l~~Gd~v~~~V~~i 203 (285)
T 3go5_A 135 AYQEDFQRLARP---AYNNMQNQNWPAIVYRLKLSGTFVYLPENNMLGFIHPSERYA--------EPRLGQVLDARVIGF 203 (285)
T ss_dssp CCHHHHHHHCCC---CCSCCTTCEEEEEEEEEETTEEEEEETTTTEEEEECGGGCSS--------CCCTTCEEEEEEEEE
T ss_pred hhhhhcchhhhh---hhhCCCCCEEEEEEEEEeCCcEEEEEeCCCeEEEEEHHHccc--------cCCCCCEEEEEEEEE
Confidence 976 56676543 456889999999999999999999 99999999999999973 589999999999999
Q ss_pred eCCCCeEEEeecccccCC--CchhhHHHHHHH
Q 000176 820 NSETGRITLSLKQSCCSS--TDASFMQEHFLL 849 (1924)
Q Consensus 820 d~~~~r~~lSlk~~~~~~--~d~~~~~~~~~~ 849 (1924)
|++++|+.||+|+..... .+++.+.+||.+
T Consensus 204 d~~d~kI~LSlk~~~~~~~~~~a~~il~~L~~ 235 (285)
T 3go5_A 204 REVDRTLNLSLKPRSFEMLENDAQMILTYLES 235 (285)
T ss_dssp ETTTTEEEEECSCCCCCCCCHHHHHHHHHHHH
T ss_pred ECCCCeEEEEeChhhhhccchHHHHHHHHHHh
Confidence 999999999999986432 556777777764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=258.85 Aligned_cols=238 Identities=14% Similarity=0.229 Sum_probs=208.7
Q ss_pred HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHhcC
Q 000176 1675 SFVWIKYMAFMLSMA-------DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV-KVFQRALQYC 1746 (1924)
Q Consensus 1675 ~~~W~~y~~~~~~~~-------e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~-~vferAl~~~ 1746 (1924)
..+|.+|+.|+.+.+ ..++++.+|++||..+|... .+|+.|+.++...++ .+.|+ ++|+||+..+
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~-----~lW~~ya~~~~~~~~--~~~a~r~il~rAi~~~ 374 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAP-----EIWFNMANYQGEKNT--DSTVITKYLKLGQQCI 374 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH-----HHHHHHHHHHHHHSC--CTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCH-----HHHHHHHHHHHhcCc--HHHHHHHHHHHHHHhC
Confidence 589999999988754 24567789999999999754 499999999999994 47785 9999999999
Q ss_pred CCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhc-----------CC-----------CHHHHHHHHHHHHhc-CHHHHH
Q 000176 1747 DPK-KVHLALLGLYERTEQNKLADELLYKMIKKF-----------KH-----------SCKVWLRRVQRLLKQ-QQEGVQ 1802 (1924)
Q Consensus 1747 ~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~-----------~~-----------~~~vw~~~a~~l~~~-~~~~A~ 1802 (1924)
|.. .+|+.|+.++++.+++++|+++|++++... |. ...+|+.|+.+..+. ..+.||
T Consensus 375 P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR 454 (679)
T 4e6h_A 375 PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASR 454 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHH
Confidence 864 889999999999999999999999999763 32 356899999999999 999999
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 000176 1803 AVVQRALLSLPRHKHIKFISQTAILEFKNG-VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1881 (1924)
Q Consensus 1803 ~l~~ral~~~p~~~~~~~~~~~A~le~~~g-~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~ 1881 (1924)
++|++|++..|... ..+|..+|.+|++.+ ++++||.+|+++|+.+|++..+|..|++++...|+.++||.+|+||+..
T Consensus 455 ~vf~~A~~~~~~~~-~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 455 KIFGKCRRLKKLVT-PDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHHHHTGGGSC-THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCC-hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 99999999844332 489999999999876 5999999999999999999999999999999999999999999999983
Q ss_pred CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000176 1882 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1882 ~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~ 1920 (1924)
..+++.++.+|..|++||.++|+.+.++.|++|+++...
T Consensus 534 ~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 534 ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 333456778999999999999999999999999987643
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.9e-21 Score=232.80 Aligned_cols=242 Identities=17% Similarity=0.262 Sum_probs=212.7
Q ss_pred CCCHHHHHHHHHHHHHc----CCH----HHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHH-------cCCC-----C
Q 000176 1672 PNSSFVWIKYMAFMLSM----ADV----EKARSIAERALQTINIREENEKLNIWVAYFNLENE-------YGNP-----P 1731 (1924)
Q Consensus 1672 P~s~~~W~~y~~~~~~~----~e~----dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~-------~g~~-----~ 1731 (1924)
|.+..+|..|+.|+.+. .+. ++|+.+|++|+...|... .+|+.|+.++.. .|+. .
T Consensus 5 ~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~-----~~w~~~~~~~~~~~~~l~~~g~~~~~~~~ 79 (308)
T 2ond_A 5 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHP-----DIWYEAAQYLEQSSKLLAEKGDMNNAKLF 79 (308)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHhchhhhhccchhhcccc
Confidence 44567999999998875 344 789999999999888644 599999998764 4631 0
Q ss_pred HHHHHHHHHHHHh-cCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHhc-CHHHHHHHHHH
Q 000176 1732 EEAVVKVFQRALQ-YCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCK-VWLRRVQRLLKQ-QQEGVQAVVQR 1807 (1924)
Q Consensus 1732 ~e~a~~vferAl~-~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~-vw~~~a~~l~~~-~~~~A~~l~~r 1807 (1924)
.++|+.+|+||++ ..|. ..+|..++.++.+.|++++|.++|+++++..|.++. +|..|+.++.+. ++++|+.+|++
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 2889999999999 4665 489999999999999999999999999998888876 999999999999 99999999999
Q ss_pred HHHhCCCCChHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCc
Q 000176 1808 ALLSLPRHKHIKFISQTAILEFK-NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL-SLPP 1885 (1924)
Q Consensus 1808 al~~~p~~~~~~~~~~~A~le~~-~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~-~~~p 1885 (1924)
|++..|.. ..+|..+|.+++. .|++++|+.+|++++..+|++.++|..|++++.+.|++++|+.+|++++.. .++|
T Consensus 160 a~~~~p~~--~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 160 AREDARTR--HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTSTTCC--THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHhcCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 99998876 4789999998875 699999999999999999999999999999999999999999999999994 2476
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000176 1886 KKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1886 k~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~ 1920 (1924)
+....+|..|+.||..+|+.+.+..++++|++...
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 54458999999999999999999999999998654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.85 E-value=5.1e-20 Score=236.94 Aligned_cols=252 Identities=18% Similarity=0.150 Sum_probs=207.6
Q ss_pred CCchHHHHHHHHHh---CCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhcCCcch---------hh--------
Q 000176 1657 APRTPDEFERLVRS---SPNSSFVWIKYMAFML----SMADVEKARSIAERALQTINIREE---------NE-------- 1712 (1924)
Q Consensus 1657 ~p~a~~~ferll~~---~P~s~~~W~~y~~~~~----~~~e~dkAr~v~eraL~~i~~~ee---------~e-------- 1712 (1924)
....+..|++++.. +|++..+|..|+.|+. .+++++.+|.+|+|||. +|.... +|
T Consensus 64 ~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~ 142 (493)
T 2uy1_A 64 KFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITG 142 (493)
T ss_dssp --CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccH
Confidence 35667899999964 7999999999999976 45689999999999997 565321 00
Q ss_pred ----------------------------HHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHhcCCC-HHHHHHHHHH
Q 000176 1713 ----------------------------KLNIWVAYFNLENEYGNPP-----EEAVVKVFQRALQYCDP-KKVHLALLGL 1758 (1924)
Q Consensus 1713 ----------------------------kl~lWiayl~le~~~g~~~-----~e~a~~vferAl~~~~~-~~i~~~l~~i 1758 (1924)
.+.+|..|+.+|...+... .+.+..+|++|+..+|. ..+|+.|+.+
T Consensus 143 ~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~ 222 (493)
T 2uy1_A 143 KKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEY 222 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 0127888888877542101 24577899999998876 4999999999
Q ss_pred HHHhCChHHHHHHHHHHHHhcCCCHH----------------------------------------HHHHHHHHHHhc-C
Q 000176 1759 YERTEQNKLADELLYKMIKKFKHSCK----------------------------------------VWLRRVQRLLKQ-Q 1797 (1924)
Q Consensus 1759 ~~~~gk~e~A~~~fe~~lk~~~~~~~----------------------------------------vw~~~a~~l~~~-~ 1797 (1924)
+.+.|+.++|+.+|++++.. |.+.. +|..|+.|+.+. .
T Consensus 223 ~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~ 301 (493)
T 2uy1_A 223 LIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRG 301 (493)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCC
Confidence 99999999999999999988 76544 455555555566 8
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000176 1798 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG-VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1876 (1924)
Q Consensus 1798 ~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g-~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lfe 1876 (1924)
.+.||.+|++| ..|.. ...+|..+|.+|+..+ ++++||.+|+++++.+|++.++|..|++++.+.|+.++||.+|+
T Consensus 302 ~~~AR~i~~~A--~~~~~-~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~e 378 (493)
T 2uy1_A 302 LELFRKLFIEL--GNEGV-GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFK 378 (493)
T ss_dssp HHHHHHHHHHH--TTSCC-CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHh--hCCCC-ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 89999999999 44543 3579999999999877 69999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000176 1877 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1877 ral~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~ 1920 (1924)
|+. +. ..+|..|++||..+|+.+.++.+++++++.+.
T Consensus 379 r~~------k~-~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 379 RLE------KT-SRMWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HSC------CB-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHH------HH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 973 22 37999999999999999999999999999775
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-19 Score=235.24 Aligned_cols=254 Identities=11% Similarity=0.141 Sum_probs=184.2
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCC-CCHHHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN-PPEEAV 1735 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~-~~~e~a 1735 (1924)
.++.+..||+.|..+|.+...|.+|+.++.+.++++.||.+|+|++..+|... .+|+.|+.+|...++ .+.+.+
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~-----~lW~~Yi~~E~~~~~~~~~~~v 122 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMA-----NIWCMRLSLEFDKMEELDAAVI 122 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHTC--CCCHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHhhCCcchHHHH
Confidence 34455567777777777777777777777777777777777777777777543 477777777777762 004777
Q ss_pred HHHHHHHHhcC---CCHHHHHHHHHHHHHhCCh--------HHHHHHHHHHHHhc----CCCHHHHHHHHHHHHh-----
Q 000176 1736 VKVFQRALQYC---DPKKVHLALLGLYERTEQN--------KLADELLYKMIKKF----KHSCKVWLRRVQRLLK----- 1795 (1924)
Q Consensus 1736 ~~vferAl~~~---~~~~i~~~l~~i~~~~gk~--------e~A~~~fe~~lk~~----~~~~~vw~~~a~~l~~----- 1795 (1924)
+.+|+||+..+ +.-++|..|+.+..+.+.. +..+++|++++... +.+..+|..|+.|+..
T Consensus 123 ~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~ 202 (679)
T 4e6h_A 123 EPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVN 202 (679)
T ss_dssp HHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccC
Confidence 77777777777 5557777777766665543 33446777776542 3456777777777652
Q ss_pred ----c-CHHHHHHHHHHHHHhCCCCCh-----------------------------------------------------
Q 000176 1796 ----Q-QQEGVQAVVQRALLSLPRHKH----------------------------------------------------- 1817 (1924)
Q Consensus 1796 ----~-~~~~A~~l~~ral~~~p~~~~----------------------------------------------------- 1817 (1924)
+ +.+.|+.+|+|+|. .|...+
T Consensus 203 ~~eeq~~~~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~ 281 (679)
T 4e6h_A 203 KFEEQQRVQYIRKLYKTLLC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPI 281 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCS
T ss_pred cHHHHhHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccc
Confidence 2 56667777777764 343322
Q ss_pred --------------------HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 000176 1818 --------------------IKFISQTAILEFKNG-------VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL 1870 (1924)
Q Consensus 1818 --------------------~~~~~~~A~le~~~g-------~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ 1870 (1924)
+.+|..|+.||...+ ..+|.+.+|+++|..+|...++|..|++++...|+.+.
T Consensus 282 ~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~ 361 (679)
T 4e6h_A 282 TLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDST 361 (679)
T ss_dssp SSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTT
T ss_pred ccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHH
Confidence 355666666666543 24567889999999999999999999999999999999
Q ss_pred HH-HHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000176 1871 IR-GLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919 (1924)
Q Consensus 1871 ar-~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v 1919 (1924)
|+ .+|+||+. ..|+.. .+|..|+.+|...|+.+.|+.+|++|++.+
T Consensus 362 a~r~il~rAi~--~~P~s~-~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l 408 (679)
T 4e6h_A 362 VITKYLKLGQQ--CIPNSA-VLAFSLSEQYELNTKIPEIETTILSCIDRI 408 (679)
T ss_dssp HHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 96 99999998 455666 699999999999999999999999999875
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.83 E-value=7.2e-19 Score=229.74 Aligned_cols=238 Identities=17% Similarity=0.264 Sum_probs=209.3
Q ss_pred HHHHHHHHHHHHHcC----CH----HHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHH-------cCCCCHH------
Q 000176 1675 SFVWIKYMAFMLSMA----DV----EKARSIAERALQTINIREENEKLNIWVAYFNLENE-------YGNPPEE------ 1733 (1924)
Q Consensus 1675 ~~~W~~y~~~~~~~~----e~----dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~-------~g~~~~e------ 1733 (1924)
..+|..|+.++.... +. .+|..+|++|+...|... .+|+.|+.++.. .|+. +
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~-----~~w~~~~~~~~~~~~~~~~~g~~--~~a~~~~ 302 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHP-----DIWYEAAQYLEQSSKLLAEKGDM--NNAKLFS 302 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHHHHHTTTCC--HHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhchhhhhccch--hhhhhhh
Confidence 479999999987642 33 478899999999888644 599999999886 5743 5
Q ss_pred -HHHHHHHHHHh-cCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHhc-CHHHHHHHHHHH
Q 000176 1734 -AVVKVFQRALQ-YCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSC-KVWLRRVQRLLKQ-QQEGVQAVVQRA 1808 (1924)
Q Consensus 1734 -~a~~vferAl~-~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~-~vw~~~a~~l~~~-~~~~A~~l~~ra 1808 (1924)
.|+.+|+||++ .+|. ..+|..++.++.+.|++++|.++|++++...+.++ .+|+.|+.++.+. ++++|+++|++|
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 89999999997 6665 59999999999999999999999999999888775 6999999999999 999999999999
Q ss_pred HHhCCCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCch
Q 000176 1809 LLSLPRHKHIKFISQTAILEF-KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL-SLPPK 1886 (1924)
Q Consensus 1809 l~~~p~~~~~~~~~~~A~le~-~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~-~~~pk 1886 (1924)
++..|.. ..+|...|.+++ ..|++++|+.+|+++|+.+|++.++|..|++++.+.|+.++||.+|++++.. ..+|.
T Consensus 383 l~~~~~~--~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 383 REDARTR--HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp HTCTTCC--THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred HhccCCc--hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 9988765 366777777765 5899999999999999999999999999999999999999999999999984 23555
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000176 1887 KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921 (1924)
Q Consensus 1887 ~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~ 1921 (1924)
.+..+|..|+.||..+|+.+.+..++.||+++...
T Consensus 461 ~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 461 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp GCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 55679999999999999999999999999998764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-18 Score=211.32 Aligned_cols=219 Identities=17% Similarity=0.240 Sum_probs=195.9
Q ss_pred CchHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHHhcCCcchhhHHHHHHHHHHH
Q 000176 1658 PRTPDEFERLVRSSPNSSFVWIKYMAFMLS-------MADV-------EKARSIAERALQTINIREENEKLNIWVAYFNL 1723 (1924)
Q Consensus 1658 p~a~~~ferll~~~P~s~~~W~~y~~~~~~-------~~e~-------dkAr~v~eraL~~i~~~ee~ekl~lWiayl~l 1723 (1924)
.++...|++++..+|+++.+|+.|+.++.+ .|++ ++|+.+|+||++.+++.. ..+|..|+.+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~----~~~~~~~~~~ 108 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN----MLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCccc----HHHHHHHHHH
Confidence 356679999999999999999999999874 5875 999999999998543322 3699999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHhcCCCH-H-HHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-c-CHH
Q 000176 1724 ENEYGNPPEEAVVKVFQRALQYCDPK-K-VHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK-Q-QQE 1799 (1924)
Q Consensus 1724 e~~~g~~~~e~a~~vferAl~~~~~~-~-i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~-~-~~~ 1799 (1924)
+...| +.++|+++|++|++..|.. . +|..++.++.+.|++++|+.+|+++++..+....+|+.++.+... . +++
T Consensus 109 ~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 109 EESRM--KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HHHTT--CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHH
T ss_pred HHhcC--CHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHH
Confidence 99999 5699999999999988764 4 999999999999999999999999999888889999988888765 4 999
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 000176 1800 GVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE---YP-KRTDLWSIYLDQEIRLGDVDLIRGLF 1875 (1924)
Q Consensus 1800 ~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~---~P-k~~dlw~~y~~le~k~gd~~~ar~lf 1875 (1924)
+|+.+|+++++.+|.+ ..+|..++.++...|++++|+.+|++++.. .| +...+|..|+.++.+.|+.+.|+.++
T Consensus 187 ~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 187 VAFKIFELGLKKYGDI--PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999986 699999999999999999999999999995 44 47889999999999999999999999
Q ss_pred HHHHhcCCCch
Q 000176 1876 ERAISLSLPPK 1886 (1924)
Q Consensus 1876 eral~~~~~pk 1886 (1924)
+|++. ..|+
T Consensus 265 ~~a~~--~~p~ 273 (308)
T 2ond_A 265 KRRFT--AFRE 273 (308)
T ss_dssp HHHHH--HTTT
T ss_pred HHHHH--Hccc
Confidence 99998 5554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.7e-18 Score=222.94 Aligned_cols=251 Identities=14% Similarity=0.261 Sum_probs=209.8
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHH-HcCCCCH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLEN-EYGNPPE 1732 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~-~~g~~~~ 1732 (1924)
.++..+++..|++++..+|++..+|+.|+.++.+.+++++|+.+|+||+...|. ..+|+.|+.+.. ..+++
T Consensus 25 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~------~~lw~~~~~~~~~~~~~~-- 96 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH------IDLWKCYLSYVRETKGKL-- 96 (530)
T ss_dssp SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC------HHHHHHHHHHHHHHTTTS--
T ss_pred hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHHccch--
Confidence 456889999999999999999999999999999999999999999999988872 348999998654 45643
Q ss_pred HHH----HHHHHHHHhcCC----CHHHHHHHHHHHHH---------hCChHHHHHHHHHHHHhcCCC--HHHHHHHHHH-
Q 000176 1733 EAV----VKVFQRALQYCD----PKKVHLALLGLYER---------TEQNKLADELLYKMIKKFKHS--CKVWLRRVQR- 1792 (1924)
Q Consensus 1733 e~a----~~vferAl~~~~----~~~i~~~l~~i~~~---------~gk~e~A~~~fe~~lk~~~~~--~~vw~~~a~~- 1792 (1924)
+.| +.+|++|+...+ ...+|..++.++.+ .++++.|+.+|+++++. |.. ..+|..|..|
T Consensus 97 ~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~~~~~~~~~~~~e 175 (530)
T 2ooe_A 97 PSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMINIEQLWRDYNKYE 175 (530)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCTTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhhhHHHHHHHHHHHH
Confidence 444 459999998643 35999999999876 78999999999999973 322 3556555443
Q ss_pred ----------------------------------------------------------------HHhc-----C----HH
Q 000176 1793 ----------------------------------------------------------------LLKQ-----Q----QE 1799 (1924)
Q Consensus 1793 ----------------------------------------------------------------l~~~-----~----~~ 1799 (1924)
.... + .+
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~ 255 (530)
T 2ooe_A 176 EGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITK 255 (530)
T ss_dssp HHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHH
T ss_pred HhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHH
Confidence 2211 0 12
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHH
Q 000176 1800 GVQAVVQRALLSLPRHKHIKFISQTAILEFK-------NGVAD-------RGRSMFEGILS-EYPKRTDLWSIYLDQEIR 1864 (1924)
Q Consensus 1800 ~A~~l~~ral~~~p~~~~~~~~~~~A~le~~-------~g~~e-------~Ar~lfe~aL~-~~Pk~~dlw~~y~~le~k 1864 (1924)
+|..+|++|+..+|.+ ..+|..||.++.+ .|+++ +|+.+|+++++ ..|++..+|..|+.++.+
T Consensus 256 ~a~~~y~~al~~~p~~--~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGHH--PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 5667899999999877 6999999999986 79987 99999999997 799999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1865 LGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1865 ~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
.|++++|+.+|++++. .+|.....+|..|+.++.+.|+.+.|+.+|++|++
T Consensus 334 ~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp TTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 9999999999999999 77776436899999999999999999999999975
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-18 Score=222.50 Aligned_cols=251 Identities=15% Similarity=0.143 Sum_probs=202.2
Q ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHH----cCC
Q 000176 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA-DVEKARSIAERALQTINIREENEKLNIWVAYFNLENE----YGN 1729 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~-e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~----~g~ 1729 (1924)
++.+.+...|+|++...| +..+|..|+.|..+.+ ..+..+.+|++|+.++.. +.....+|..|+.++.. .+
T Consensus 28 ~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~--d~~s~~iW~~Yi~f~~~~~~~~~- 103 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFEN--YWDSYGLYKEYIEEEGKIEDEQT- 103 (493)
T ss_dssp TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTT--CTTCHHHHHHHHHHTSSCSSHHH-
T ss_pred CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCC--CcccHHHHHHHHHHHHhchhhhH-
Confidence 457788999999999888 8999999999998877 457889999999998653 12224799999999653 34
Q ss_pred CCHHHHHHHHHHHHhcCCC--HH------------------------------------------------HHHHHHHHH
Q 000176 1730 PPEEAVVKVFQRALQYCDP--KK------------------------------------------------VHLALLGLY 1759 (1924)
Q Consensus 1730 ~~~e~a~~vferAl~~~~~--~~------------------------------------------------i~~~l~~i~ 1759 (1924)
..+.++.+|+||++.... .. +|..|+.+.
T Consensus 104 -~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E 182 (493)
T 2uy1_A 104 -RIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLE 182 (493)
T ss_dssp -HHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 357899999999984221 13 455555554
Q ss_pred HHhC--C-----hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh--------------
Q 000176 1760 ERTE--Q-----NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-------------- 1817 (1924)
Q Consensus 1760 ~~~g--k-----~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~-------------- 1817 (1924)
.... - ..++..+|++++..+|..+.+|+.|+.|+.++ +.++|+.+|+||+.. |....
T Consensus 183 ~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~ 261 (493)
T 2uy1_A 183 MENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAV 261 (493)
T ss_dssp HTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHH
T ss_pred hcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHH
Confidence 3321 1 34577899999999999999999999999999 999999999999999 87531
Q ss_pred ------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHH
Q 000176 1818 ------------------------IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG-DVDLIR 1872 (1924)
Q Consensus 1818 ------------------------~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~g-d~~~ar 1872 (1924)
..+|..|+.++.+.+++++||.+|+++ ...+...++|..++.+|...+ ++++||
T Consensus 262 ~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar 340 (493)
T 2uy1_A 262 YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPY 340 (493)
T ss_dssp HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHH
Confidence 145777888888888999999999999 544446789999999999877 699999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000176 1873 GLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKA 1915 (1924)
Q Consensus 1873 ~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rA 1915 (1924)
.+|++++. ..|+.. .+|..|++||...|+.+.++.+|++|
T Consensus 341 ~ife~al~--~~~~~~-~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 341 NIFSSGLL--KHPDST-LLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHH--HCTTCH-HHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHH--HCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999 456666 58999999999999999999999986
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-16 Score=198.73 Aligned_cols=252 Identities=12% Similarity=0.085 Sum_probs=221.0
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
.++..++...|++++..+|++...|..++.++...|++++|...|+++++..|.. ...|..+..+....| +.+
T Consensus 114 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g--~~~ 186 (388)
T 1w3b_A 114 AGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF-----AVAWSNLGCVFNAQG--EIW 186 (388)
T ss_dssp HSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHTTT--CHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcC--CHH
Confidence 3567888889999999999999999999999999999999999999999876642 357888888888888 558
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 000176 1734 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1811 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~ 1811 (1924)
.|...|++|++..|.. ..|..++.++...+++++|...|++++...|.+..+|..++..+... ++++|...|++++..
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 266 (388)
T 1w3b_A 187 LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999988874 88999999999999999999999999999898999999999999988 999999999999998
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHH
Q 000176 1812 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFL 1891 (1924)
Q Consensus 1812 ~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~l 1891 (1924)
.|.. ..+|..+|.++.+.|++++|...|++++...|.+.+.|..++.++.+.|++++|..+|++++. ..|... ..
T Consensus 267 ~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~-~~ 341 (388)
T 1w3b_A 267 QPHF--PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFA-AA 341 (388)
T ss_dssp CSSC--HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTCH-HH
T ss_pred CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCcH-HH
Confidence 8876 578999999999999999999999999999999999999999999999999999999999988 667666 57
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1892 FKKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1892 w~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
|..+.......|+.+.|...|++|++
T Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 342 HSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888888889999999999998875
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-16 Score=196.16 Aligned_cols=249 Identities=16% Similarity=0.131 Sum_probs=149.6
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1736 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~ 1736 (1924)
..++...|++++..+|++...|..++..+.+.|++++|...|+++++..|.. ...|..+..+....| +.++|.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g--~~~~A~ 155 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL-----YCVRSDLGNLLKALG--RLEEAK 155 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTC-----THHHHHHHHHHHTTS--CHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcc--CHHHHH
Confidence 4455555555555555555555555555555555555555555555544421 134555555555555 336666
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC
Q 000176 1737 KVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1814 (1924)
Q Consensus 1737 ~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~ 1814 (1924)
+.|+++++..|.. ..|..++.+|...|++++|...|++++...|.....|..++..+... ++++|...|++++...|.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 235 (388)
T 1w3b_A 156 ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 6666666655542 55666666666666666666666666666666666666666666665 666666666666666655
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000176 1815 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1894 (1924)
Q Consensus 1815 ~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~ 1894 (1924)
+ ..+|..+|..+...|++++|...|++++...|...++|..++..+.+.|+++.|..+|++++. ..|... ..|..
T Consensus 236 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~-~~~~~ 310 (388)
T 1w3b_A 236 H--AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHA-DSLNN 310 (388)
T ss_dssp C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCH-HHHHH
T ss_pred C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcccH-HHHHH
Confidence 4 356666666666666666666666666666666666666666666666666666666666666 444444 45555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1895 YLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1895 yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
........|+.+.+...+++|++
T Consensus 311 l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 311 LANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 66666666666666666666654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-16 Score=190.80 Aligned_cols=252 Identities=11% Similarity=0.040 Sum_probs=175.6
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcC-CCCH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYG-NPPE 1732 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g-~~~~ 1732 (1924)
.++..++...|++++..+|.+...|..++..+...+++++|...++++++..|... ..|..+.......+ .+
T Consensus 35 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~-- 107 (330)
T 3hym_B 35 NCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP-----VSWFAVGCYYLMVGHKN-- 107 (330)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST-----HHHHHHHHHHHHSCSCH--
T ss_pred cCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH-----HHHHHHHHHHHHhhhhH--
Confidence 34566677777777777777777777777777777777777777777776655432 35666666666666 43
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Q 000176 1733 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1810 (1924)
Q Consensus 1733 e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~ 1810 (1924)
++|...|++|++..|.. ..|..++.+|...|++++|...|++++...+.....|..++..+... ++++|...|+++++
T Consensus 108 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 187 (330)
T 3hym_B 108 EHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS 187 (330)
T ss_dssp HHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66777777777766653 67777777777777777777777777777777777777777777777 77777777777777
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 000176 1811 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY---------PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1881 (1924)
Q Consensus 1811 ~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~---------Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~ 1881 (1924)
..|.+ ..+|..+|.+++..|++++|...|++++... |....+|..++.++.+.|++++|...|++++.
T Consensus 188 ~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~- 264 (330)
T 3hym_B 188 IAPED--PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV- 264 (330)
T ss_dssp TCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred hCCCC--hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-
Confidence 77665 4677777777777777777777777777665 55556777777777777777777777777776
Q ss_pred CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1882 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1882 ~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
..|... ..|..+.......|+.+.|...+++|++
T Consensus 265 -~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 265 -LIPQNA-STYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp -HSTTCS-HHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred -hCccch-HHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 444444 4666666666667777777777766654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.4e-17 Score=200.50 Aligned_cols=259 Identities=11% Similarity=-0.003 Sum_probs=225.1
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
.++..+|...|++++..+|++...|..++..+...|++++|+..|+++++..|.. ...|..+..++...| +.+
T Consensus 78 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g--~~~ 150 (365)
T 4eqf_A 78 EGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNN-----LKALMALAVSYTNTS--HQQ 150 (365)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHH
T ss_pred CCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHccc--cHH
Confidence 4567889999999999999999999999999999999999999999999876643 358999999999999 569
Q ss_pred HHHHHHHHHHhcCCCH-HHH----------HHHHHHHHHhCChHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhc-CHH
Q 000176 1734 AVVKVFQRALQYCDPK-KVH----------LALLGLYERTEQNKLADELLYKMIKKFKH--SCKVWLRRVQRLLKQ-QQE 1799 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~-~i~----------~~l~~i~~~~gk~e~A~~~fe~~lk~~~~--~~~vw~~~a~~l~~~-~~~ 1799 (1924)
+|...|+++++..|.. ..| ..++.+|...|++++|.+.|++++...|. .+.+|..++..+... +++
T Consensus 151 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~ 230 (365)
T 4eqf_A 151 DACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFN 230 (365)
T ss_dssp HHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHH
Confidence 9999999999988764 333 34588999999999999999999999998 899999999999999 999
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1800 GVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1879 (1924)
Q Consensus 1800 ~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal 1879 (1924)
+|...|+++++..|.+ ..+|..+|.++...|++++|+..|++++...|+...+|..++.++.+.|++++|+..|++++
T Consensus 231 ~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 308 (365)
T 4eqf_A 231 RAIDAFNAALTVRPED--YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTAL 308 (365)
T ss_dssp HHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999887 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCchh-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 000176 1880 SLSLPPKK-----------MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1923 (1924)
Q Consensus 1880 ~~~~~pk~-----------~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~~~ 1923 (1924)
. +.|+. ...+|..+.......|..+.++.+..++++.++..+
T Consensus 309 ~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~~~~~ 361 (365)
T 4eqf_A 309 S--LQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRAF 361 (365)
T ss_dssp H--HHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGGTTTT
T ss_pred H--hCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHHHHhc
Confidence 8 33331 125788888888889999999999988877766654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.6e-16 Score=194.01 Aligned_cols=257 Identities=12% Similarity=0.036 Sum_probs=231.9
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
.++..+|...|++++..+|++..+|..++..+...|++++|...|+++++..|.. ...|..+..+....| +.+
T Consensus 77 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~l~~~~~~~g--~~~ 149 (368)
T 1fch_A 77 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN-----QTALMALAVSFTNES--LQR 149 (368)
T ss_dssp TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcC--CHH
Confidence 4557889999999999999999999999999999999999999999999877642 357888889989999 569
Q ss_pred HHHHHHHHHHhcCCCH-HHHH----------------HHHHHHHHhCChHHHHHHHHHHHHhcCC--CHHHHHHHHHHHH
Q 000176 1734 AVVKVFQRALQYCDPK-KVHL----------------ALLGLYERTEQNKLADELLYKMIKKFKH--SCKVWLRRVQRLL 1794 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~-~i~~----------------~l~~i~~~~gk~e~A~~~fe~~lk~~~~--~~~vw~~~a~~l~ 1794 (1924)
+|...|+++++..|.. ..|. .++.++ ..|++++|...|++++...|. ...+|..++..+.
T Consensus 150 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~ 228 (368)
T 1fch_A 150 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 228 (368)
T ss_dssp HHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH
Confidence 9999999999998764 3332 355555 899999999999999999988 8999999999999
Q ss_pred hc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 000176 1795 KQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRG 1873 (1924)
Q Consensus 1795 ~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~ 1873 (1924)
.. ++++|...|++++...|.. ..+|..+|.++...|++++|...|++++...|....+|..++.++.+.|+++.|..
T Consensus 229 ~~g~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 306 (368)
T 1fch_A 229 LSGEYDKAVDCFTAALSVRPND--YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE 306 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99 9999999999999999877 58999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCchh-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 000176 1874 LFERAISLSLPPKK-----------MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1923 (1924)
Q Consensus 1874 lferal~~~~~pk~-----------~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~~~ 1923 (1924)
.|++++. +.|+. . ..|..+.......|+.+.+..++.++++.+...+
T Consensus 307 ~~~~al~--~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 364 (368)
T 1fch_A 307 HFLEALN--MQRKSRGPRGEGGAMSE-NIWSTLRLALSMLGQSDAYGAADARDLSTLLTMF 364 (368)
T ss_dssp HHHHHHH--HHHTC------CCCCCH-HHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHT
T ss_pred HHHHHHH--hCCCCCCccccccchhh-HHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHhc
Confidence 9999998 55444 4 6899999999999999999999999999988765
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=5e-16 Score=187.44 Aligned_cols=258 Identities=9% Similarity=0.031 Sum_probs=228.9
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
.++..++...|++++..+|++...|..++..+...+++++|...++++++..|.. ...|..+..+....| +.+
T Consensus 34 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~la~~~~~~~--~~~ 106 (327)
T 3cv0_A 34 LANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-----IAVHAALAVSHTNEH--NAN 106 (327)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC-----HHHHHHHHHHHHHcC--CHH
Confidence 4557789999999999999999999999999999999999999999999876643 357888888888999 559
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHH--------------HH-HHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-
Q 000176 1734 AVVKVFQRALQYCDPK-KVHLAL--------------LG-LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ- 1796 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~-~i~~~l--------------~~-i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~- 1796 (1924)
+|...|+++++..|.. ..|..+ +. ++...|++++|...|++++...+....+|..++..+...
T Consensus 107 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 186 (327)
T 3cv0_A 107 AALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSN 186 (327)
T ss_dssp HHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Confidence 9999999999988764 444444 44 577889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000176 1797 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1876 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lfe 1876 (1924)
++++|...|++++...|.. ..+|..+|.+++..|++++|...|++++...|.+..+|..++.++.+.|+++.|...|+
T Consensus 187 ~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 264 (327)
T 3cv0_A 187 NYDSAAANLRRAVELRPDD--AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLV 264 (327)
T ss_dssp CHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999999999876 58999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCch------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 000176 1877 RAISLSLPPK------------KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1923 (1924)
Q Consensus 1877 ral~~~~~pk------------~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~~~ 1923 (1924)
+++. ..|. .. ..|..+.......|+.+.+..++++|++.....+
T Consensus 265 ~a~~--~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 320 (327)
T 3cv0_A 265 RAIY--MQVGGTTPTGEASREATR-SMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEF 320 (327)
T ss_dssp HHHH--HHTTSCC-----CCTHHH-HHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHT
T ss_pred HHHH--hCCccccccccchhhcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhh
Confidence 9998 5555 44 6888888889999999999999999998877643
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.1e-15 Score=180.02 Aligned_cols=249 Identities=11% Similarity=0.037 Sum_probs=120.2
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1736 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~ 1736 (1924)
..+|...|++++..+|++..+|..++..+...|++++|...++++++..|.. ...|..+..+....| +.+.|.
T Consensus 19 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~--~~~~A~ 91 (359)
T 3ieg_A 19 LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF-----TAARLQRGHLLLKQG--KLDEAE 91 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHT--CHHHHH
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-----chHHHHHHHHHHHcC--ChHHHH
Confidence 4445555555555555555555555555555555555555555555443321 124444444444444 234555
Q ss_pred HHHHHHHhcCC-------------------------------------------------C-HHHHHHHHHHHHHhCChH
Q 000176 1737 KVFQRALQYCD-------------------------------------------------P-KKVHLALLGLYERTEQNK 1766 (1924)
Q Consensus 1737 ~vferAl~~~~-------------------------------------------------~-~~i~~~l~~i~~~~gk~e 1766 (1924)
..|+++++..| . ..+|..++.+|...|+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (359)
T 3ieg_A 92 DDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPR 171 (359)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHH
Confidence 55555555444 3 244444444444555555
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHH------------HHHHHHcCC
Q 000176 1767 LADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQT------------AILEFKNGV 1833 (1924)
Q Consensus 1767 ~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~------------A~le~~~g~ 1833 (1924)
+|...|++++...|.++.+|..++..+... ++++|...|+++++..|... .+|..+ |..++..|+
T Consensus 172 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~ 249 (359)
T 3ieg_A 172 KAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK--RCFAHYKQVKKLNKLIESAEELIRDGR 249 (359)
T ss_dssp HHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccch--HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 555555555544444455555555544444 55555555555555444432 222211 444444555
Q ss_pred HHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 000176 1834 ADRGRSMFEGILSEYPKRTDL----WSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIE 1909 (1924)
Q Consensus 1834 ~e~Ar~lfe~aL~~~Pk~~dl----w~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~ 1909 (1924)
+++|...|++++...|++... |..++..+.+.|++++|...|++++. ..|... ..|..+.......|+.+.|.
T Consensus 250 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~g~~~~A~ 326 (359)
T 3ieg_A 250 YTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQ--MEPDNV-NALKDRAEAYLIEEMYDEAI 326 (359)
T ss_dssp HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCcccH-HHHHHHHHHHHHcCCHHHHH
Confidence 555555555555555544322 33344455555555555555555555 344444 34555555555555555555
Q ss_pred HHHHHHHH
Q 000176 1910 YVKQKAME 1917 (1924)
Q Consensus 1910 ~v~~rAle 1917 (1924)
..|++|++
T Consensus 327 ~~~~~a~~ 334 (359)
T 3ieg_A 327 QDYEAAQE 334 (359)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 55555544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.8e-16 Score=194.13 Aligned_cols=237 Identities=16% Similarity=0.056 Sum_probs=208.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHH
Q 000176 1674 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVH 1752 (1924)
Q Consensus 1674 s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~-~~i~ 1752 (1924)
+...|+..+..+.+.|++++|...|+++++..|.. ...|..+..++...| +.++|...|++|++..|. ...|
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~ 136 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD-----AEAWQFLGITQAENE--NEQAAIVALQRCLELQPNNLKAL 136 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC-----HHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCCCHHHH
Confidence 44559999999999999999999999999887743 358999999999999 569999999999999887 4999
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHH----------HHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHH
Q 000176 1753 LALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRR----------VQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFI 1821 (1924)
Q Consensus 1753 ~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~----------a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~ 1821 (1924)
..++.+|...|++++|...|+++++..|.....|..+ +..+... ++++|..+|++++...|...+..+|
T Consensus 137 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 216 (365)
T 4eqf_A 137 MALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ 216 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHH
Confidence 9999999999999999999999999887666666554 7888888 9999999999999999985457899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000176 1822 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1901 (1924)
Q Consensus 1822 ~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~ 1901 (1924)
..+|.++...|++++|...|++++...|++..+|..++..+...|++++|+..|++++. +.|... ..|..+......
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~-~~~~~l~~~~~~ 293 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALE--IQPGFI-RSRYNLGISCIN 293 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCch-HHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 677777 688888889999
Q ss_pred cCCHHHHHHHHHHHHHHHH
Q 000176 1902 VGEEERIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1902 ~G~~~~~~~v~~rAle~v~ 1920 (1924)
.|+.+.|...|++|++.-.
T Consensus 294 ~g~~~~A~~~~~~al~~~~ 312 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQR 312 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCc
Confidence 9999999999999998764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-15 Score=201.11 Aligned_cols=253 Identities=8% Similarity=0.002 Sum_probs=222.9
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
.++..+|...|++++..+|++...|..++..+.+.|++++|..+++++++..|.. ...|..++.++...| +.+
T Consensus 318 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g--~~~ 390 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEK-----AVTWLAVGIYYLCVN--KIS 390 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS-----HHHHHHHHHHHHHTT--CHH
T ss_pred hcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCccc-----HHHHHHHHHHHHHhc--cHH
Confidence 3557788889999998889999999999999999999999999999998766542 357888888888999 569
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 000176 1734 AVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1811 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~ 1811 (1924)
+|.+.|+++++..|. ...|..++.+|.+.|++++|.++|++++...+.+..+|..++..+.+. ++++|.++|+++++.
T Consensus 391 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 391 EARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999998876 479999999999999999999999999998888999999999999988 999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 000176 1812 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE------YPKR-TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP 1884 (1924)
Q Consensus 1812 ~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~------~Pk~-~dlw~~y~~le~k~gd~~~ar~lferal~~~~~ 1884 (1924)
.|.+ ..+|..++.++.+.|++++|..+|++++.. .|.. ..+|..++..+.+.|+++.|..+|++++. ..
T Consensus 471 ~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~ 546 (597)
T 2xpi_A 471 FQYD--PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL--LS 546 (597)
T ss_dssp CCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HS
T ss_pred CCCC--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hC
Confidence 8875 588999999999999999999999999987 5554 67899999999999999999999999998 55
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1885 PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1885 pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
|... ..|..+.......|+.++|..+|++|++.
T Consensus 547 p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 547 TNDA-NVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp SCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCh-HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 6666 68888889999999999999999999875
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-15 Score=182.81 Aligned_cols=242 Identities=7% Similarity=0.028 Sum_probs=208.9
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---Ccch--------------------
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTIN---IREE-------------------- 1710 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~---~~ee-------------------- 1710 (1924)
.++..++...|++++..+|++...|..++.++...|++++|...|+++++..| ...+
T Consensus 50 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 129 (359)
T 3ieg_A 50 MGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALD 129 (359)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577899999999999999999999999999999999999999999998766 2110
Q ss_pred ---------------------hhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHH
Q 000176 1711 ---------------------NEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLA 1768 (1924)
Q Consensus 1711 ---------------------~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A 1768 (1924)
.....+|..+..+....+ +.+.|...|+++++..|. ...|..++.+|...|++++|
T Consensus 130 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 130 AFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEG--EPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 001245666667777778 559999999999998876 49999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHH------------HHHHHhc-CHHHHHHHHHHHHHhCCCCChH--HHHHHHHHHHHHcCC
Q 000176 1769 DELLYKMIKKFKHSCKVWLRR------------VQRLLKQ-QQEGVQAVVQRALLSLPRHKHI--KFISQTAILEFKNGV 1833 (1924)
Q Consensus 1769 ~~~fe~~lk~~~~~~~vw~~~------------a~~l~~~-~~~~A~~l~~ral~~~p~~~~~--~~~~~~A~le~~~g~ 1833 (1924)
...|++++..++.....|..+ +..+... ++++|...|++++...|..... .++..+|.++...|+
T Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 208 LSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccC
Confidence 999999999999999988765 6668888 9999999999999999986432 457788999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 000176 1834 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1900 (1924)
Q Consensus 1834 ~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~ 1900 (1924)
+++|...|++++...|.+..+|..++.++...|++++|...|++++. +.|+.. .+|..+.....
T Consensus 288 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~-~~~~~l~~~~~ 351 (359)
T 3ieg_A 288 PVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQ-QIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCh-HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 777777 57776665544
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-15 Score=191.00 Aligned_cols=256 Identities=10% Similarity=0.027 Sum_probs=224.8
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHH------------H
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAY------------F 1721 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiay------------l 1721 (1924)
.++..+|...|++++..+|++..+|..++..+...|++++|...|+++++..|... .....|..+ .
T Consensus 73 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a 150 (450)
T 2y4t_A 73 MGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEN--EEKEAQSQLIKSDEMQRLRSQA 150 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh--hhHHHHHHHHHHHHHHHHHHHH
Confidence 35578899999999999999999999999999999999999999999998766422 001244443 3
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHH
Q 000176 1722 NLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQE 1799 (1924)
Q Consensus 1722 ~le~~~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~ 1799 (1924)
......+ +.+.|...|+++++..|. ..+|..++.+|...|++++|.+.|++++...+.+..+|..++..+... +++
T Consensus 151 ~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 228 (450)
T 2y4t_A 151 LNAFGSG--DYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHE 228 (450)
T ss_dssp HHHHHHT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcC--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 4466778 559999999999999886 489999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHH
Q 000176 1800 GVQAVVQRALLSLPRHKHIKFISQT------------AILEFKNGVADRGRSMFEGILSEYPKRTD----LWSIYLDQEI 1863 (1924)
Q Consensus 1800 ~A~~l~~ral~~~p~~~~~~~~~~~------------A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d----lw~~y~~le~ 1863 (1924)
+|...|++++...|.. ..+|..+ |..++..|++++|..+|++++...|.+.. +|..++.++.
T Consensus 229 ~A~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~ 306 (450)
T 2y4t_A 229 LSLSEVRECLKLDQDH--KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFS 306 (450)
T ss_dssp HHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 9999999999999887 3556555 88999999999999999999999999854 7888899999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1864 RLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1864 k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
+.|+++.|...|++++. +.|... ..|..........|+.+.|...+++|++.
T Consensus 307 ~~g~~~~A~~~~~~a~~--~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 307 KDEKPVEAIRVCSEVLQ--MEPDNV-NALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp TTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHH--hCcccH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999998 667777 68989999999999999999999999764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.70 E-value=4.7e-15 Score=188.24 Aligned_cols=254 Identities=11% Similarity=0.065 Sum_probs=228.1
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
.++..+|...|++++..+|++...|..++..+...|++++|...|+++++..|.. ...|..+..++...| +.+
T Consensus 39 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g--~~~ 111 (450)
T 2y4t_A 39 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF-----TAARLQRGHLLLKQG--KLD 111 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHcC--CHH
Confidence 4568899999999999999999999999999999999999999999999877643 358889999999999 569
Q ss_pred HHHHHHHHHHhcCCCH----HHHHHH------------HHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-
Q 000176 1734 AVVKVFQRALQYCDPK----KVHLAL------------LGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ- 1796 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~----~i~~~l------------~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~- 1796 (1924)
+|...|+++++..|.. ..|..+ +..|...|++++|...|++++...+.+..+|..++..+...
T Consensus 112 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 191 (450)
T 2y4t_A 112 EAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEG 191 (450)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCC
Confidence 9999999999998874 555555 55699999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHH
Q 000176 1797 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY------------LDQEIR 1864 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y------------~~le~k 1864 (1924)
++++|...|++++...|.. ..+|..+|.++...|++++|...|++++...|.....|..+ +..+.+
T Consensus 192 ~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (450)
T 2y4t_A 192 EPRKAISDLKAASKLKNDN--TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR 269 (450)
T ss_dssp CGGGGHHHHHHHHHHHCSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998876 68999999999999999999999999999999999999887 889999
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1865 LGDVDLIRGLFERAISLSLPPKKMK---FLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1865 ~gd~~~ar~lferal~~~~~pk~~k---~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
.|+++.|..+|++++. ..|.... ..|..........|+.+.|...+++|++.
T Consensus 270 ~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 270 DGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999998 5555431 35677778888899999999999999864
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.8e-15 Score=181.06 Aligned_cols=243 Identities=15% Similarity=0.111 Sum_probs=215.5
Q ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA-DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~-e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
++..++...|++++..+|++...|..++.++...+ ++++|...|+++++..|... ..|..+..+....+ +.+
T Consensus 70 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~l~~~~~~~~--~~~ 142 (330)
T 3hym_B 70 NKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG-----PAWIAYGHSFAVES--EHD 142 (330)
T ss_dssp TCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCT-----HHHHHHHHHHHHHT--CHH
T ss_pred hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccH-----HHHHHHHHHHHHcc--CHH
Confidence 45678889999999999999999999999999999 99999999999998766432 47999999999999 559
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 000176 1734 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1811 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~ 1811 (1924)
.|...|++|++..|.. ..|..++.+|...|++++|.+.|++++...+.+..+|..++..+... ++++|...|++++..
T Consensus 143 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 143 QAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp HHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 9999999999998874 88999999999999999999999999999999999999999999999 999999999999998
Q ss_pred CCC-------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 000176 1812 LPR-------HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP 1884 (1924)
Q Consensus 1812 ~p~-------~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~ 1884 (1924)
.+. .....+|..+|.++...|++++|...|++++...|++..+|..++.++.+.|++++|...|++++. +.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~ 300 (330)
T 3hym_B 223 IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LR 300 (330)
T ss_dssp HTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TC
T ss_pred hhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cC
Confidence 632 122479999999999999999999999999999999999999999999999999999999999998 77
Q ss_pred chhHHHHHHHHHH-HHHHcCCHHH
Q 000176 1885 PKKMKFLFKKYLE-YEKSVGEEER 1907 (1924)
Q Consensus 1885 pk~~k~lw~~yl~-~E~~~G~~~~ 1907 (1924)
|... ..|..... ++...|+.+.
T Consensus 301 p~~~-~~~~~l~~~~~~~~g~~~a 323 (330)
T 3hym_B 301 RDDT-FSVTMLGHCIEMYIGDSEA 323 (330)
T ss_dssp SCCH-HHHHHHHHHHHTTTTC---
T ss_pred CCch-HHHHHHHHHHHHHhCchhc
Confidence 7777 45555555 5677777653
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.8e-15 Score=194.92 Aligned_cols=252 Identities=9% Similarity=-0.003 Sum_probs=227.4
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1736 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~ 1736 (1924)
..++...|++++.. |.+...|..++..+.+.|++++|..+|+++++..|... ..|..++......| ..++|.
T Consensus 288 ~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g--~~~~A~ 359 (597)
T 2xpi_A 288 LRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNL-----DVYPLHLASLHESG--EKNKLY 359 (597)
T ss_dssp HHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCC-----TTHHHHHHHHHHHT--CHHHHH
T ss_pred HHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccH-----HHHHHHHHHHHHhC--CHHHHH
Confidence 45567777777655 78899999999999999999999999999998766432 47889999999999 569999
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC
Q 000176 1737 KVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1814 (1924)
Q Consensus 1737 ~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~ 1814 (1924)
.+|+++++..|. ...|..++.+|.+.|++++|.++|++++...+.+...|..++..+.+. ++++|.++|++++...|.
T Consensus 360 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 439 (597)
T 2xpi_A 360 LISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG 439 (597)
T ss_dssp HHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999988876 489999999999999999999999999999999999999999999999 999999999999999987
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCchhHHH
Q 000176 1815 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL----SLPPKKMKF 1890 (1924)
Q Consensus 1815 ~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~----~~~pk~~k~ 1890 (1924)
+. .+|..++..+.+.|++++|..+|++++...|.+..+|..++.++.+.|++++|..+|++++.. ...|.....
T Consensus 440 ~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~ 517 (597)
T 2xpi_A 440 TH--LPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA 517 (597)
T ss_dssp CS--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHH
T ss_pred ch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHH
Confidence 64 899999999999999999999999999999999999999999999999999999999999983 235554226
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1891 LFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1891 lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
.|..++......|+.+.|..++++|++.
T Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 518 TWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 8999999999999999999999999874
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.6e-15 Score=185.01 Aligned_cols=254 Identities=14% Similarity=0.063 Sum_probs=220.4
Q ss_pred CCCchHH-HHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCC
Q 000176 1656 DAPRTPD-EFERLVRSSPNS----SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP 1730 (1924)
Q Consensus 1656 ~~p~a~~-~ferll~~~P~s----~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~ 1730 (1924)
+..++.. .|++++...|++ ...|+..+..+...|++++|...|+++++..|.. ...|..+.......|
T Consensus 40 ~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g-- 112 (368)
T 1fch_A 40 DYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH-----MEAWQYLGTTQAENE-- 112 (368)
T ss_dssp ------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-----HHHHHHHHHHHHHTT--
T ss_pred HHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHCc--
Confidence 3555666 777777667765 4669999999999999999999999999876643 357888888889999
Q ss_pred CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHH----------------HHHHHH
Q 000176 1731 PEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWL----------------RRVQRL 1793 (1924)
Q Consensus 1731 ~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~----------------~~a~~l 1793 (1924)
+.+.|...|++|++..|. ...|..++.+|...|++++|.+.|++++...+.....|. .++.++
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 559999999999999886 489999999999999999999999999999988777775 344444
Q ss_pred Hhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 000176 1794 LKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR 1872 (1924)
Q Consensus 1794 ~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar 1872 (1924)
.. ++++|...|++++...|......+|..+|.++...|++++|...|++++...|++..+|..++.++...|+++.|.
T Consensus 193 -~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 193 -SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp -HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred -hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 66 9999999999999999985447899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000176 1873 GLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1873 ~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~ 1920 (1924)
..|++++. +.|... ..|..+.......|+.+.|...+++|++.-.
T Consensus 272 ~~~~~al~--~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 272 AAYRRALE--LQPGYI-RSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HHHHHHHH--HCTTCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--hCCCcH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 99999999 667777 6888888889999999999999999998754
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-15 Score=171.42 Aligned_cols=199 Identities=14% Similarity=0.042 Sum_probs=169.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-H
Q 000176 1672 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-K 1750 (1924)
Q Consensus 1672 P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~ 1750 (1924)
|+++..|..++..+.+.|++++|...|+++++..|... ..|..+..+....| +.++|...|++|++..|.. .
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~lg~~~~~~g--~~~~A~~~~~~al~~~P~~~~ 74 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDP-----EALYWLARTQLKLG--LVNPALENGKTLVARTPRYLG 74 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH-----HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHH
Confidence 78889999999999999999999999999998777533 47888888888999 5699999999999999875 8
Q ss_pred HHHHHHHHHHHh-----------CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChH
Q 000176 1751 VHLALLGLYERT-----------EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI 1818 (1924)
Q Consensus 1751 i~~~l~~i~~~~-----------gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~ 1818 (1924)
.|..++.+|... |++++|...|+++++..|.+..+|+.++..+... ++++|...|+++++.. . +.
T Consensus 75 a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~--~~ 151 (217)
T 2pl2_A 75 GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-D--TP 151 (217)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C--CH
T ss_pred HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c--ch
Confidence 999999999999 9999999999999999999999999999999999 9999999999999998 3 37
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1819 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1819 ~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
.+|..+|.++...|++++|...|++++...|.+..+|..++.++...|+++.|...|+++-.
T Consensus 152 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 152 EIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999998654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.64 E-value=8.4e-14 Score=180.92 Aligned_cols=254 Identities=13% Similarity=0.037 Sum_probs=217.1
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
.++..+|...|++++..+|+++.+|..++.++.+.|++++|...|+++++..|... ..|..+..++...|+ .+
T Consensus 38 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~--~~ 110 (537)
T 3fp2_A 38 AKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHS-----KALLRRASANESLGN--FT 110 (537)
T ss_dssp TTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHTC--HH
T ss_pred hccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchH-----HHHHHHHHHHHHcCC--HH
Confidence 56699999999999999999999999999999999999999999999998776432 356666666555552 24
Q ss_pred HHH-----------------------------------------------------------------------------
Q 000176 1734 AVV----------------------------------------------------------------------------- 1736 (1924)
Q Consensus 1734 ~a~----------------------------------------------------------------------------- 1736 (1924)
+|.
T Consensus 111 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (537)
T 3fp2_A 111 DAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD 190 (537)
T ss_dssp HHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSC
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccc
Confidence 444
Q ss_pred --------------------------------HHHHHHHhcCCCH--------HHHHHHHHHHHHhCChHHHHHHHHHHH
Q 000176 1737 --------------------------------KVFQRALQYCDPK--------KVHLALLGLYERTEQNKLADELLYKMI 1776 (1924)
Q Consensus 1737 --------------------------------~vferAl~~~~~~--------~i~~~l~~i~~~~gk~e~A~~~fe~~l 1776 (1924)
..|+++++..|.. ..|..++.++...|++++|...|++++
T Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~ 270 (537)
T 3fp2_A 191 TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI 270 (537)
T ss_dssp SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 4445555555542 357777788899999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 000176 1777 KKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLW 1855 (1924)
Q Consensus 1777 k~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw 1855 (1924)
...+. ..+|..++..+... ++++|...|++++...|.. ..+|..+|.+++..|++++|...|++++...|.+..+|
T Consensus 271 ~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 347 (537)
T 3fp2_A 271 NLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY--PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPY 347 (537)
T ss_dssp HHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHH
T ss_pred hcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99887 99999999999888 9999999999999999876 58999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000176 1856 SIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1856 ~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~ 1920 (1924)
..++.++...|+++.|..+|++++. ..|... .+|..+.......|+.+.|...+++|++.-.
T Consensus 348 ~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 348 IQLACLLYKQGKFTESEAFFNETKL--KFPTLP-EVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCh-HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999998 566666 5888888999999999999999999988653
|
| >1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 | Back alignment and structure |
|---|
Probab=99.62 E-value=6.3e-18 Score=183.64 Aligned_cols=123 Identities=18% Similarity=0.234 Sum_probs=101.6
Q ss_pred CCCCCEEEEEEEEEeeceEEEEe--CCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeeccccc
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIML--SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1442 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l--~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~ 1442 (1924)
.++|+++.|+|++++++|+||+| .++++|+||+|+++|.++.++.+.|++||.|.++|+++|+++++|.||+|....+
T Consensus 13 p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~~~~~ 92 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPE 92 (182)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTTCCHH
T ss_pred CCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeecCcC
Confidence 37999999999999999999999 5789999999999999999999999999999999999999999999999998887
Q ss_pred ccchhccccccccCCCcEEEEEEEEeec-ceEEEEEecCceeEEeeccccCcc
Q 000176 1443 TASQSEINNLSNLHVGDIVIGQIKRVES-YGLFITIENTNLVGLCHVSELSED 1494 (1924)
Q Consensus 1443 ~~~~~~~~~~~~l~~G~~v~G~V~~v~~-~GvFV~l~~~~v~gl~h~sels~~ 1494 (1924)
||.. ....++.|+++.|.|+++++ || |+|++ +++||+|+|++++.
T Consensus 93 p~~~----~~~~~~~g~~v~g~v~~i~~~~g--v~l~~-giegl~h~s~~~~~ 138 (182)
T 1kl9_A 93 EAIK----CEDKFTKSKTVYSILRHVAEVLE--YTKDE-QLESLFQRTAWVFD 138 (182)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHHHHHTT--CCSHH-HHHHHHHHTHHHHH
T ss_pred hHHH----HHHhccCCCEEEEEEEEchhhcC--CcccC-ChhheEEeeecchh
Confidence 7643 25678999999999999998 99 78877 89999999988765
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=3.3e-14 Score=176.64 Aligned_cols=232 Identities=8% Similarity=0.020 Sum_probs=208.3
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMAD-VEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE 1732 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e-~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~ 1732 (1924)
.++..+|...|+++|..+|++..+|..++..+..+++ +++|...|++|+...|.. ..+|..+..+....|.+
T Consensus 110 ~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~-----~~a~~~~g~~~~~~g~~-- 182 (382)
T 2h6f_A 110 DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN-----YQVWHHRRVLVEWLRDP-- 182 (382)
T ss_dssp TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHTCC--
T ss_pred CCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHccCH--
Confidence 3568899999999999999999999999999999996 999999999999877753 35899999999999965
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc--CHHHH-----HHH
Q 000176 1733 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ--QQEGV-----QAV 1804 (1924)
Q Consensus 1733 e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~--~~~~A-----~~l 1804 (1924)
++|...|++|++..|.. ..|..++.++...|++++|.+.|++++...+.+..+|+.++..+... ..++| .+.
T Consensus 183 ~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~ 262 (382)
T 2h6f_A 183 SQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQY 262 (382)
T ss_dssp TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 99999999999999875 99999999999999999999999999999999999999999999994 54666 599
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------C-HHHHHH
Q 000176 1805 VQRALLSLPRHKHIKFISQTAILEFKNG--VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG--------D-VDLIRG 1873 (1924)
Q Consensus 1805 ~~ral~~~p~~~~~~~~~~~A~le~~~g--~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~g--------d-~~~ar~ 1873 (1924)
|++|+...|.+ ..+|..++.++...| ++++|...++++ ...|++..+|..+++++.+.| + +++|..
T Consensus 263 ~~~Al~l~P~~--~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~ 339 (382)
T 2h6f_A 263 TLEMIKLVPHN--ESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALE 339 (382)
T ss_dssp HHHHHHHSTTC--HHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHCCCC--HHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 99999999987 589999999999888 699999999998 889999999999999999874 2 589999
Q ss_pred HHHHH-HhcCCCchhHHHHHHHHHHH
Q 000176 1874 LFERA-ISLSLPPKKMKFLFKKYLEY 1898 (1924)
Q Consensus 1874 lfera-l~~~~~pk~~k~lw~~yl~~ 1898 (1924)
+|+++ +. +.|.+. .+|..+...
T Consensus 340 ~~~~l~~~--~DP~r~-~~w~~~~~~ 362 (382)
T 2h6f_A 340 LCEILAKE--KDTIRK-EYWRYIGRS 362 (382)
T ss_dssp HHHHHHHT--TCGGGH-HHHHHHHHH
T ss_pred HHHHHHHH--hCchhH-HHHHHHHHH
Confidence 99999 87 888887 577766654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.61 E-value=6.4e-14 Score=168.88 Aligned_cols=235 Identities=12% Similarity=0.030 Sum_probs=206.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHH
Q 000176 1674 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVH 1752 (1924)
Q Consensus 1674 s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~-~~i~ 1752 (1924)
+...|+..+..+...+++++|...|+++++..|.. ...|..+.......+ +.+.|...|+++++..|. ...|
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~ 92 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPER-----EEAWRSLGLTQAENE--KDGLAIIALNHARMLDPKDIAVH 92 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCcCCHHHH
Confidence 44568899999999999999999999999877742 357888888888999 559999999999999886 4899
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHH--------------HH-HHHhc-CHHHHHHHHHHHHHhCCCCC
Q 000176 1753 LALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRR--------------VQ-RLLKQ-QQEGVQAVVQRALLSLPRHK 1816 (1924)
Q Consensus 1753 ~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~--------------a~-~l~~~-~~~~A~~l~~ral~~~p~~~ 1816 (1924)
..++.+|...|++++|.+.|++++...+....+|..+ +. .+... ++++|...|+++++..|..
T Consensus 93 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~- 171 (327)
T 3cv0_A 93 AALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND- 171 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTC-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCC-
Confidence 9999999999999999999999999998888888777 55 34555 9999999999999999876
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000176 1817 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1896 (1924)
Q Consensus 1817 ~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl 1896 (1924)
..+|..+|.++...|++++|...|++++...|.+..+|..++.++...|+++.|...|++++. ..|... ..|....
T Consensus 172 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~-~~~~~l~ 247 (327)
T 3cv0_A 172 -AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD--INPGYV-RVMYNMA 247 (327)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHH
T ss_pred -HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCH-HHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999999999 666666 5788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHH
Q 000176 1897 EYEKSVGEEERIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1897 ~~E~~~G~~~~~~~v~~rAle~v~ 1920 (1924)
......|+.+.|...+++|++.-.
T Consensus 248 ~~~~~~g~~~~A~~~~~~a~~~~~ 271 (327)
T 3cv0_A 248 VSYSNMSQYDLAAKQLVRAIYMQV 271 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC
Confidence 888999999999999999988653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-14 Score=179.45 Aligned_cols=237 Identities=11% Similarity=0.054 Sum_probs=206.2
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Q 000176 1667 LVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1746 (1924)
Q Consensus 1667 ll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~ 1746 (1924)
++..+|++..+|..++..+...+++++|...|+++++..|.. ...|..+..+....+. +.++|...|++|++.+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~-----~~a~~~~g~~l~~~g~-d~~eAl~~~~~al~l~ 162 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN-----YTVWHFRRVLLKSLQK-DLHEEMNYITAIIEEQ 162 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHC
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccC-----HHHHHHHHHHHHHccc-CHHHHHHHHHHHHHHC
Confidence 345678999999999999999999999999999999877743 3589999999999994 1599999999999999
Q ss_pred CCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHH
Q 000176 1747 DPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQT 1824 (1924)
Q Consensus 1747 ~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~ 1824 (1924)
|.. .+|..++.+|...|++++|...|++++...|.+..+|+.++..+... ++++|...|+++|...|.+ ..+|..+
T Consensus 163 P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~--~~a~~~l 240 (382)
T 2h6f_A 163 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN--NSVWNQR 240 (382)
T ss_dssp TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC--HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--HHHHHHH
Confidence 975 99999999999999999999999999999999999999999999999 9999999999999999987 5899999
Q ss_pred HHHHHH-cCCHHHH-----HHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000176 1825 AILEFK-NGVADRG-----RSMFEGILSEYPKRTDLWSIYLDQEIRLG--DVDLIRGLFERAISLSLPPKKMKFLFKKYL 1896 (1924)
Q Consensus 1825 A~le~~-~g~~e~A-----r~lfe~aL~~~Pk~~dlw~~y~~le~k~g--d~~~ar~lferal~~~~~pk~~k~lw~~yl 1896 (1924)
|.++.. .|..++| ...|++++...|++..+|..++.++.+.| ++++|...++++ . ..|+.. ..+..+.
T Consensus 241 g~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~-~al~~La 316 (382)
T 2h6f_A 241 YFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSP-YLIAFLV 316 (382)
T ss_dssp HHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCH-HHHHHHH
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCH-HHHHHHH
Confidence 999999 5665777 59999999999999999999999999888 689999999887 4 555555 4555566
Q ss_pred HHHHHcC--------C-HHHHHHHHHHH
Q 000176 1897 EYEKSVG--------E-EERIEYVKQKA 1915 (1924)
Q Consensus 1897 ~~E~~~G--------~-~~~~~~v~~rA 1915 (1924)
++..+.| + .+.|..+|+++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 317 DIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 5555443 2 47788888877
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.1e-14 Score=165.56 Aligned_cols=236 Identities=8% Similarity=0.000 Sum_probs=199.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC----H
Q 000176 1674 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP----K 1749 (1924)
Q Consensus 1674 s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~----~ 1749 (1924)
+...|+.++.++...|++++|...|+++++..|... ..|..+...+...+ +.++|.+.|+++++..+. .
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~ 74 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSP-----YIYNRRAVCYYELA--KYDLAQKDIETYFSKVNATKAKS 74 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCS-----TTHHHHHHHHHHTT--CHHHHHHHHHHHHTTSCTTTCCH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHHh--hHHHHHHHHHHHHhccCchhHHH
Confidence 346788999999999999999999999998777533 36888888888889 559999999999994322 2
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
..|..++.+|...|++++|.+.|+++++..+....+|..++..+... ++++|...|++++...|.. ..+|..+|...
T Consensus 75 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~ 152 (272)
T 3u4t_A 75 ADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD--PKVFYELGQAY 152 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc--HHHHHHHHHHH
Confidence 56999999999999999999999999999999999999999999999 9999999999999998776 58999999555
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcC-CCch----hHHHHHHHHHHHHH
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD---VDLIRGLFERAISLS-LPPK----KMKFLFKKYLEYEK 1900 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd---~~~ar~lferal~~~-~~pk----~~k~lw~~yl~~E~ 1900 (1924)
+..+++++|...|++++...|++...|..++..+...++ ++.|...|++++... ..|. .....|.....+..
T Consensus 153 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 153 YYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 556799999999999999999999999999999999888 888999999999831 0122 11245666777788
Q ss_pred HcCCHHHHHHHHHHHHHH
Q 000176 1901 SVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1901 ~~G~~~~~~~v~~rAle~ 1918 (1924)
..|+.+.|...+++|++.
T Consensus 233 ~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 233 INRDKVKADAAWKNILAL 250 (272)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhc
Confidence 899999999999999875
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.6e-14 Score=163.50 Aligned_cols=215 Identities=16% Similarity=0.122 Sum_probs=157.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHH
Q 000176 1674 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVH 1752 (1924)
Q Consensus 1674 s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~-~~i~ 1752 (1924)
.+..|+..+..+...+++++|...|+++++..|.. ...|..+.......+ +.+.|...|+++++..+. ..+|
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~-----~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~ 94 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED-----AIPYINFANLLSSVN--ELERALAFYDKALELDSSAATAY 94 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTC-----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCcchHHH
Confidence 45677777888888888888888888888765532 346777777777788 458888888888888765 4888
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc
Q 000176 1753 LALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1831 (1924)
Q Consensus 1753 ~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~ 1831 (1924)
..++.+|...|++++|.+.|+++++.++....+|..++..+... ++++|...|+++++..|.. ..+|..+|.+++..
T Consensus 95 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 172 (243)
T 2q7f_A 95 YGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND--TEARFQFGMCLANE 172 (243)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHc
Confidence 88888888888888888888888888888888888888888888 8888888888888888765 57888888888888
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 000176 1832 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1900 (1924)
Q Consensus 1832 g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~ 1900 (1924)
|++++|...|++++...|....+|..++.++.+.|+++.|...|++++. +.|... ..|..+..++.
T Consensus 173 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~-~~~~~~~~l~~ 238 (243)
T 2q7f_A 173 GMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID--IQPDHM-LALHAKKLLGH 238 (243)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH--HCTTCH-HHHHHHTC---
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc--cCcchH-HHHHHHHHHHh
Confidence 8888899999988888888888888888888888888889888988888 566655 45555544443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.7e-14 Score=182.84 Aligned_cols=251 Identities=10% Similarity=0.030 Sum_probs=199.0
Q ss_pred CCCCchHHHHHHHHH-----h--C-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHH
Q 000176 1655 KDAPRTPDEFERLVR-----S--S-------PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAY 1720 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~-----~--~-------P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiay 1720 (1924)
++..+|...|++++. . + |.+...|..++..+...|++++|...+++++...|. ...|..+
T Consensus 203 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~l 276 (514)
T 2gw1_A 203 ESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR------VNSYIYM 276 (514)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC------HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc------HHHHHHH
Confidence 336677777887776 3 3 455678888888888888888888888888876663 3467777
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CH
Q 000176 1721 FNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQ 1798 (1924)
Q Consensus 1721 l~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~ 1798 (1924)
..+....+.+ +.|...|+++++..|.. .+|..++.+|...|++++|...|++++...+.+..+|..++..+... ++
T Consensus 277 ~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 354 (514)
T 2gw1_A 277 ALIMADRNDS--TEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKF 354 (514)
T ss_dssp HHHHHTSSCC--TTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCH
T ss_pred HHHHHHCCCH--HHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCH
Confidence 7777777854 78888888888887754 78888888888888888888888888888888888888888888888 88
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH---cCCHH
Q 000176 1799 EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD------LWSIYLDQEIR---LGDVD 1869 (1924)
Q Consensus 1799 ~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d------lw~~y~~le~k---~gd~~ 1869 (1924)
++|..+|+++++..|... .+|..+|.+++..|++++|...|++++...|+... +|..++..+.. .|+++
T Consensus 355 ~~A~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 432 (514)
T 2gw1_A 355 DDCETLFSEAKRKFPEAP--EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFI 432 (514)
T ss_dssp HHHHHHHHHHHHHSTTCS--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHH
T ss_pred HHHHHHHHHHHHHcccCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHH
Confidence 888888888888887764 78888888888888888888888888888777644 88888888888 88888
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1870 LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1870 ~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
.|...|++++. ..|... ..|.....+....|+.+.|...+++|++.
T Consensus 433 ~A~~~~~~a~~--~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 433 EATNLLEKASK--LDPRSE-QAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCcccH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 88888888887 556666 56777777778888888888888888764
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.58 E-value=4.8e-14 Score=183.23 Aligned_cols=249 Identities=12% Similarity=0.044 Sum_probs=211.7
Q ss_pred CCchHHHHHHHHHhCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCC
Q 000176 1657 APRTPDEFERLVRSSPNSSFV-------WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN 1729 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~-------W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~ 1729 (1924)
..++...|++++..+|++... |..++.++...+++++|...|++++...|. ...|..+..+....+.
T Consensus 218 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~ 291 (537)
T 3fp2_A 218 LTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT------PNSYIFLALTLADKEN 291 (537)
T ss_dssp HHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------HHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC------chHHHHHHHHHHHhcC
Confidence 456788899999999998765 455556677889999999999999987663 2467777777777785
Q ss_pred CCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHH
Q 000176 1730 PPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQR 1807 (1924)
Q Consensus 1730 ~~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~r 1807 (1924)
+ +.|...|+++++..|. ..+|..++.+|...|++++|.+.|++++...+....+|..++..+... ++++|...|++
T Consensus 292 ~--~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 369 (537)
T 3fp2_A 292 S--QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNE 369 (537)
T ss_dssp C--HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred H--HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5 9999999999998876 489999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHc----------CCHHHH
Q 000176 1808 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL------WSIYLDQEIRL----------GDVDLI 1871 (1924)
Q Consensus 1808 al~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dl------w~~y~~le~k~----------gd~~~a 1871 (1924)
++...|.+. .+|..+|.++...|++++|...|++++...|..... +...+.++... |+++.|
T Consensus 370 ~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A 447 (537)
T 3fp2_A 370 TKLKFPTLP--EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAA 447 (537)
T ss_dssp HHHHCTTCT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHH
T ss_pred HHHhCCCCh--HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHH
Confidence 999998874 789999999999999999999999999987765443 44556777777 999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1872 RGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1872 r~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
...|++++. ..|... ..|..+.......|+.+.|...|++|++.
T Consensus 448 ~~~~~~a~~--~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 448 IKLLTKACE--LDPRSE-QAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hCCCCH-HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999998 666666 67888888888999999999999999875
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-13 Score=158.92 Aligned_cols=214 Identities=7% Similarity=-0.033 Sum_probs=129.7
Q ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcc--hhhHHHHHHHHHHHHHHcCCCCH
Q 000176 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE--ENEKLNIWVAYFNLENEYGNPPE 1732 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~e--e~ekl~lWiayl~le~~~g~~~~ 1732 (1924)
++..+|...|++++..+ ++...|..++..+...+++++|...+++++...|... ......+|..+.......+ +.
T Consensus 19 ~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~ 95 (258)
T 3uq3_A 19 RQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLG--DL 95 (258)
T ss_dssp TCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--CH
T ss_pred ccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcc--cH
Confidence 34566666666666655 6666666666666666666666666666665443210 0011345555555555666 34
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 000176 1733 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1811 (1924)
Q Consensus 1733 e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~ 1811 (1924)
++|...|+++++..+... ++...+++++|...|++++...+....+|..++..+... ++++|...|++++..
T Consensus 96 ~~A~~~~~~a~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 168 (258)
T 3uq3_A 96 KKTIEYYQKSLTEHRTAD-------ILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR 168 (258)
T ss_dssp HHHHHHHHHHHHHCCCHH-------HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhH-------HHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 666666666666665533 333344455666666666666555666666666666666 666666666666666
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1812 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1812 ~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
.|.. ..+|..+|.++...|++++|...|++++...|....+|..++..+.+.|+++.|...|++++.
T Consensus 169 ~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 169 APED--ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp CTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Cccc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6554 356666666666666666666666666666666666666666666666666666666666665
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.5e-13 Score=157.53 Aligned_cols=227 Identities=11% Similarity=-0.020 Sum_probs=192.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHhcCCC---
Q 000176 1674 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP--EEAVVKVFQRALQYCDP--- 1748 (1924)
Q Consensus 1674 s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~--~e~a~~vferAl~~~~~--- 1748 (1924)
....|...+..+...+++++|...|+++++.. .. ...|..+.......++++ .+......+..-...+.
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 77 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KD-----ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKV 77 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC-----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHH
Confidence 46789999999999999999999999999875 22 347888888878877741 23344444444443333
Q ss_pred -HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 000176 1749 -KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAI 1826 (1924)
Q Consensus 1749 -~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~ 1826 (1924)
..+|..++.+|...|++++|.+.|++++...+. .. .+... ++++|...|++++...|.. ..+|..+|.
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~-------~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~ 147 (258)
T 3uq3_A 78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-AD-------ILTKLRNAEKELKKAEAEAYVNPEK--AEEARLEGK 147 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HH-------HHHHHHHHHHHHHHHHHHHHCCHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-hH-------HHHHHhHHHHHHHHHHHHHHcCcch--HHHHHHHHH
Confidence 389999999999999999999999999998765 33 34444 6999999999999988765 589999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHH
Q 000176 1827 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE 1906 (1924)
Q Consensus 1827 le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~ 1906 (1924)
+++..|++++|...|++++...|.+..+|..++..+.+.|+++.|...|++++. ..|... ..|..........|+.+
T Consensus 148 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~-~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 148 EYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFV-RAYIRKATAQIAVKEYA 224 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCHHHH-HHHHHHHHHHHHHhhHH
Confidence 999999999999999999999999999999999999999999999999999999 667777 57888888899999999
Q ss_pred HHHHHHHHHHHHH
Q 000176 1907 RIEYVKQKAMEYV 1919 (1924)
Q Consensus 1907 ~~~~v~~rAle~v 1919 (1924)
.|...+++|++.-
T Consensus 225 ~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 225 SALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999876
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.58 E-value=6e-14 Score=164.97 Aligned_cols=237 Identities=11% Similarity=0.047 Sum_probs=205.1
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
.++..+|...|++++..+|++...|..++..+...|++++|...+++++. .+...+ -....|..+..+....+ +.+
T Consensus 16 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~-~~~~~~~~lg~~~~~~~--~~~ 91 (272)
T 3u4t_A 16 NNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATK-AKSADFEYYGKILMKKG--QDS 91 (272)
T ss_dssp TTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTT-CCHHHHHHHHHHHHHTT--CHH
T ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchh-HHHHHHHHHHHHHHHcc--cHH
Confidence 45578899999999999999999999999999999999999999999997 443222 12356888888889999 569
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 000176 1734 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1811 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~ 1811 (1924)
+|...|++|++..|.. .+|..++.+|...|++++|.+.|++++...+....+|..++..++.. ++++|...|+++++.
T Consensus 92 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 171 (272)
T 3u4t_A 92 LAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL 171 (272)
T ss_dssp HHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998875 89999999999999999999999999999999999999999445555 999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC---CCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1812 LPRHKHIKFISQTAILEFKNGV---ADRGRSMFEGILSEY---PKR-----TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1812 ~p~~~~~~~~~~~A~le~~~g~---~e~Ar~lfe~aL~~~---Pk~-----~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
.|.. ...|..+|..+...|+ +++|...|++++... |.. ..+|..++.++.+.|++++|...|++++.
T Consensus 172 ~p~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 172 KPNI--YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA 249 (272)
T ss_dssp STTC--HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Cccc--hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9987 5899999999998898 899999999999886 542 35788899999999999999999999999
Q ss_pred cCCCchhHHHHHHHHHHHH
Q 000176 1881 LSLPPKKMKFLFKKYLEYE 1899 (1924)
Q Consensus 1881 ~~~~pk~~k~lw~~yl~~E 1899 (1924)
+.|.+. ..|.....+.
T Consensus 250 --~~p~~~-~a~~~l~~~~ 265 (272)
T 3u4t_A 250 --LDPTNK-KAIDGLKMKL 265 (272)
T ss_dssp --HCTTCH-HHHHHHC---
T ss_pred --cCccHH-HHHHHhhhhh
Confidence 677776 4666554443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=8.5e-14 Score=179.49 Aligned_cols=259 Identities=10% Similarity=-0.022 Sum_probs=223.1
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchh----------------------
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREEN---------------------- 1711 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~---------------------- 1711 (1924)
.++..+|...|++++..+|++..+|..++..+...|++++|...|++++...|.....
T Consensus 52 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 131 (514)
T 2gw1_A 52 VGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFG 131 (514)
T ss_dssp HTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--
T ss_pred HhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557889999999999999999999999999999999999999999999766532111
Q ss_pred ----------------------------------------------------hHHHHHHHHHHHHHH---cCCCCHHHHH
Q 000176 1712 ----------------------------------------------------EKLNIWVAYFNLENE---YGNPPEEAVV 1736 (1924)
Q Consensus 1712 ----------------------------------------------------ekl~lWiayl~le~~---~g~~~~e~a~ 1736 (1924)
.....|......... .+ +.+.|.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~ 209 (514)
T 2gw1_A 132 DIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPE--SYDKAD 209 (514)
T ss_dssp -------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTT--HHHHHH
T ss_pred HHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhc--cHHHHH
Confidence 002233333333333 46 459999
Q ss_pred HHHHHHHh-----c--CC-------C-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHH
Q 000176 1737 KVFQRALQ-----Y--CD-------P-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEG 1800 (1924)
Q Consensus 1737 ~vferAl~-----~--~~-------~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~ 1800 (1924)
..|+++++ . .| . ...|..++.+|...|++++|...|++++...+. ..+|..++..+... ++++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~ 288 (514)
T 2gw1_A 210 ESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTE 288 (514)
T ss_dssp HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTT
T ss_pred HHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHH
Confidence 99999999 4 22 1 278999999999999999999999999999988 99999999999999 9999
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1801 VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1801 A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
|...|++++...|... .+|..+|.+++..|++++|...|++++...|.+..+|..++.++...|+++.|..+|++++.
T Consensus 289 A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 366 (514)
T 2gw1_A 289 YYNYFDKALKLDSNNS--SVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR 366 (514)
T ss_dssp GGGHHHHHHTTCTTCT--HHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCcCCH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999998874 79999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000176 1881 LSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1881 ~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~ 1920 (1924)
..|... ..|..+.......|+.+.|...+++|++.-.
T Consensus 367 --~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 403 (514)
T 2gw1_A 367 --KFPEAP-EVPNFFAEILTDKNDFDKALKQYDLAIELEN 403 (514)
T ss_dssp --HSTTCS-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --HcccCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 555555 5788888888999999999999999988644
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-13 Score=159.65 Aligned_cols=207 Identities=12% Similarity=0.029 Sum_probs=173.7
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-
Q 000176 1671 SPNS-SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP- 1748 (1924)
Q Consensus 1671 ~P~s-~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~- 1748 (1924)
+|.. ..+|..++..+...+++++|...|+++++..|.. ...|..+..+....+ +.++|.+.|+++++..|.
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~~~~~ 104 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS-----ADAHAALAVVFQTEM--EPKLADEEYRKALASDSRN 104 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTC
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh-----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCcCc
Confidence 4544 6788888888888899999999999998766532 347777778878888 558889999999888775
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 000176 1749 KKVHLALLGLYERTEQNKLADELLYKMIK--KFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1825 (1924)
Q Consensus 1749 ~~i~~~l~~i~~~~gk~e~A~~~fe~~lk--~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A 1825 (1924)
..+|..++.+|...|++++|.+.|++++. ..+....+|..++..+... ++++|...|+++++..|.. ..+|..+|
T Consensus 105 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~la 182 (252)
T 2ho1_A 105 ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ--PSVALEMA 182 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc--HHHHHHHH
Confidence 48888889999999999999999999888 6677788888999888888 9999999999999888776 57888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1826 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1826 ~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
.+++..|++++|...|++++...|.....|..++.++.+.|+++.|+.+|++++. ..|...
T Consensus 183 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~ 243 (252)
T 2ho1_A 183 DLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR--LYPGSL 243 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTSH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCCH
Confidence 9999999999999999999998898888888888898899999999999999888 555554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.55 E-value=5.5e-13 Score=151.16 Aligned_cols=208 Identities=13% Similarity=0.047 Sum_probs=187.5
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-
Q 000176 1670 SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP- 1748 (1924)
Q Consensus 1670 ~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~- 1748 (1924)
.+|++...|..++..+...|++++|...++++++..|.. ...|..+..+....+ +.+.|...|+++++..|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~ 75 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN-----ELAWLVRAEIYQYLK--VNDKAQESFRQALSIKPDS 75 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTC
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc-----hHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCC
Confidence 468889999999999999999999999999999877643 357888888888899 569999999999999876
Q ss_pred HHHHHHHHHHHHHh-CChHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHH
Q 000176 1749 KKVHLALLGLYERT-EQNKLADELLYKMIK--KFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQT 1824 (1924)
Q Consensus 1749 ~~i~~~l~~i~~~~-gk~e~A~~~fe~~lk--~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~ 1824 (1924)
...|..++.+|... |++++|...|++++. .++....+|..++..+... ++++|...|+++++..|.+ ..+|..+
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l 153 (225)
T 2vq2_A 76 AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF--PPAFKEL 153 (225)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHH
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--chHHHHH
Confidence 48999999999999 999999999999998 5566689999999999999 9999999999999999876 5899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1825 AILEFKNGVADRGRSMFEGILSEYP-KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1825 A~le~~~g~~e~Ar~lfe~aL~~~P-k~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
|.+++..|++++|...|++++...| .+...|...+.++...|+.+.|..+++.++. ..|...
T Consensus 154 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~~ 216 (225)
T 2vq2_A 154 ARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYSE 216 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCH
Confidence 9999999999999999999999999 9999999999999999999999999999987 455544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.5e-13 Score=153.14 Aligned_cols=194 Identities=14% Similarity=0.078 Sum_probs=166.1
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000176 1715 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1793 (1924)
Q Consensus 1715 ~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l 1793 (1924)
..|..+.......| +.++|...|++|++..|.. ..|..++.+|.+.|++++|...|+++++..|++...|..++..+
T Consensus 6 ~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALG--RYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 47888888888999 5699999999999999875 99999999999999999999999999999999999999999988
Q ss_pred Hhc------------CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000176 1794 LKQ------------QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1861 (1924)
Q Consensus 1794 ~~~------------~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~l 1861 (1924)
... ++++|...|+++++..|.+ ..+|..+|.++...|++++|...|+++++.. .+..+|..++.+
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~ 160 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRY--APLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence 753 7899999999999999987 5899999999999999999999999999999 999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1862 EIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916 (1924)
Q Consensus 1862 e~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAl 1916 (1924)
+...|+++.|...|++++. ..|... ..|..+.......|+.+.+...|+++-
T Consensus 161 ~~~~g~~~~A~~~~~~al~--~~P~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALE--QAPKDL-DLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHH--HSTTCH-HHHHHHHHHHTC---------------
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCCh-HHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999 777777 578888888888999999988888764
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.8e-13 Score=154.87 Aligned_cols=204 Identities=12% Similarity=0.093 Sum_probs=179.7
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
.++..+|...|++++..+|++...|..++..+...+++++|...++++++..|.. ...|..+..+....+ +.+
T Consensus 36 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~la~~~~~~~--~~~ 108 (243)
T 2q7f_A 36 FGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA-----ATAYYGAGNVYVVKE--MYK 108 (243)
T ss_dssp ------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHH
T ss_pred hhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-----hHHHHHHHHHHHHhc--cHH
Confidence 3457888999999999999999999999999999999999999999999876642 357888888888999 569
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 000176 1734 AVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1811 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~ 1811 (1924)
.|...|+++++..+. ..+|..++.+|...|++++|...|++++...+....+|..++..+... ++++|...|+++++.
T Consensus 109 ~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 109 EAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ 188 (243)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999876 589999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000176 1812 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1866 (1924)
Q Consensus 1812 ~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~g 1866 (1924)
.|.. ..+|..+|.+++..|++++|...|++++...|++..+|..+..+....+
T Consensus 189 ~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 189 DPGH--ADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp CTTC--HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred Cccc--HHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 9876 5899999999999999999999999999999999999998877765544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.1e-13 Score=160.12 Aligned_cols=245 Identities=11% Similarity=0.038 Sum_probs=146.5
Q ss_pred CCCCchHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1655 KDAPRTPDEFERLVRSSPNS-SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s-~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
+...+++..++++...+|++ ...+.-++..++.+|+++.|...++.. .+ ..+..+..+..+....+ +.+
T Consensus 13 g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~-----~~~~a~~~la~~~~~~~--~~~ 82 (291)
T 3mkr_A 13 GSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SA-----PELQAVRMFAEYLASHS--RRD 82 (291)
T ss_dssp TCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SC-----HHHHHHHHHHHHHHCST--THH
T ss_pred HHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CC-----hhHHHHHHHHHHHcCCC--cHH
Confidence 34444555555544444544 345555666667777776666554331 11 11233334444444445 446
Q ss_pred HHHHHHHHHHhc--CCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHH
Q 000176 1734 AVVKVFQRALQY--CDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1809 (1924)
Q Consensus 1734 ~a~~vferAl~~--~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral 1809 (1924)
+|.+.|++++.. .|. ..+|+.++.+|.+.|++++|.+.|++ +.+..+|..++..+.+. ++++|...|++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677777776654 233 36667777777777777777777766 56667777777777766 7777777777777
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHH
Q 000176 1810 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMK 1889 (1924)
Q Consensus 1810 ~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k 1889 (1924)
+..|......+...|..+....|++++|..+|++++..+|.+..+|+.++..+.+.|+++.|...|++++. ..|..+
T Consensus 158 ~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~--~~p~~~- 234 (291)
T 3mkr_A 158 DQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD--KDSGHP- 234 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-
T ss_pred hhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCH-
Confidence 76665422222233344444556677777777777777777777777777777777777777777777776 556666
Q ss_pred HHHHHHHHHHHHcCCHH-HHHHHHHHHHH
Q 000176 1890 FLFKKYLEYEKSVGEEE-RIEYVKQKAME 1917 (1924)
Q Consensus 1890 ~lw~~yl~~E~~~G~~~-~~~~v~~rAle 1917 (1924)
..|..++.+....|+.. .+..+++++++
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45555555555566553 35566666654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-12 Score=151.06 Aligned_cols=198 Identities=13% Similarity=0.070 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000176 1714 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1792 (1924)
Q Consensus 1714 l~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~ 1792 (1924)
...|..+.......+.+ ++|...|+++++..|. ..+|..++.+|...|++++|.+.|++++...+....+|..++..
T Consensus 37 ~~~~~~~a~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNT--EQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCT--GGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCh--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence 56888888888899955 9999999999999876 48999999999999999999999999999999999999999999
Q ss_pred HHhc-CHHHHHHHHHHHHH--hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 000176 1793 LLKQ-QQEGVQAVVQRALL--SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD 1869 (1924)
Q Consensus 1793 l~~~-~~~~A~~l~~ral~--~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~ 1869 (1924)
+... ++++|..+|++++. ..|. +..+|..+|.+++..|++++|...|++++...|.+..+|..++.++...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPE--RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTT--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH
Confidence 9999 99999999999998 4444 36899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1870 LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1870 ~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
.|..+|++++. ..|... ..|.....+....|+.+.+..+++++++.
T Consensus 193 ~A~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQ--GGGQNA-RSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHT--TSCCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCcCcH-HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999998 666666 57778888888899999999999999765
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-12 Score=144.48 Aligned_cols=169 Identities=15% Similarity=0.072 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000176 1714 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1792 (1924)
Q Consensus 1714 l~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~ 1792 (1924)
..+|..+.+.+...| +.++|.+.|++|++.+|.. ..|..++.+|.+.|++++|...+++++...+....+|..++..
T Consensus 5 ~~iy~~lG~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKG--DFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 358999999999999 5599999999999999875 9999999999999999999999999999999999999999999
Q ss_pred HHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 000176 1793 LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1871 (1924)
Q Consensus 1793 l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~a 1871 (1924)
+... +++.|...+.+++...|.+ ..+|..+|.+++..|++++|...|+++++..|.+..+|..++..+.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVY--ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccc--hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 9999 9999999999999999887 589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhH
Q 000176 1872 RGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1872 r~lferal~~~~~pk~~ 1888 (1924)
...|++|+. +.|+.+
T Consensus 161 ~~~~~~al~--~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALE--KEEKKA 175 (184)
T ss_dssp HHHHHHHHH--TTHHHH
T ss_pred HHHHHHHHh--CCccCH
Confidence 999999999 777765
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=9.1e-13 Score=164.05 Aligned_cols=265 Identities=10% Similarity=0.006 Sum_probs=218.7
Q ss_pred cCCCCchHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCc-chhhHHHHHHHHHHHHHHcC
Q 000176 1654 EKDAPRTPDEFERLVRSSPNS----SFVWIKYMAFMLSMADVEKARSIAERALQTINIR-EENEKLNIWVAYFNLENEYG 1728 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s----~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~-ee~ekl~lWiayl~le~~~g 1728 (1924)
.++..++...|++++...|++ ..+|..++..+...|++++|...+++++...... ........|..+..+....|
T Consensus 22 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 101 (406)
T 3sf4_A 22 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 101 (406)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcC
Confidence 456889999999999999998 4688999999999999999999999998753211 12233467778888888889
Q ss_pred CCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHhCC--------------------hHHHHHHHHHHHHhcC-
Q 000176 1729 NPPEEAVVKVFQRALQYCDP-------KKVHLALLGLYERTEQ--------------------NKLADELLYKMIKKFK- 1780 (1924)
Q Consensus 1729 ~~~~e~a~~vferAl~~~~~-------~~i~~~l~~i~~~~gk--------------------~e~A~~~fe~~lk~~~- 1780 (1924)
+.+.|...|++|++..+. ..+|..++.+|...|+ +++|...|++++..+.
T Consensus 102 --~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 179 (406)
T 3sf4_A 102 --NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTA 179 (406)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 559999999999987653 2589999999999999 9999999999887642
Q ss_pred -----CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000176 1781 -----HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH----IKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1850 (1924)
Q Consensus 1781 -----~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~----~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk 1850 (1924)
....+|..++..+... ++++|...|++++...+.... ..++..+|.+++..|++++|...|++++...|.
T Consensus 180 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 259 (406)
T 3sf4_A 180 LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 259 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 2355788999999999 999999999999988765422 348999999999999999999999999988765
Q ss_pred C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000176 1851 R------TDLWSIYLDQEIRLGDVDLIRGLFERAISL----SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1851 ~------~dlw~~y~~le~k~gd~~~ar~lferal~~----~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~ 1920 (1924)
. ..+|..++.++...|++++|...|++++.. ...+... ..|..+..+....|+.+.|...+++|++...
T Consensus 260 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 338 (406)
T 3sf4_A 260 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEG-RACWSLGNAYTALGNHDQAMHFAEKHLEISR 338 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 5 568899999999999999999999999972 1122223 4677777788889999999999999999865
Q ss_pred h
Q 000176 1921 S 1921 (1924)
Q Consensus 1921 ~ 1921 (1924)
.
T Consensus 339 ~ 339 (406)
T 3sf4_A 339 E 339 (406)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.4e-13 Score=170.69 Aligned_cols=209 Identities=11% Similarity=-0.008 Sum_probs=189.8
Q ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHH
Q 000176 1660 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADV-EKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKV 1738 (1924)
Q Consensus 1660 a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~-dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~v 1738 (1924)
+...++..+...|++..+|..++..+...+++ ++|...|++|++..|.. ...|..+..++...| +.++|.+.
T Consensus 87 al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~-----~~a~~~lg~~~~~~g--~~~~A~~~ 159 (474)
T 4abn_A 87 TLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL-----VEAWNQLGEVYWKKG--DVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHT--CHHHHHHH
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcC--CHHHHHHH
Confidence 34456666677899999999999999999999 99999999999887743 358999999999999 56999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHh---------CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh---------cCHHH
Q 000176 1739 FQRALQYCDPKKVHLALLGLYERT---------EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK---------QQQEG 1800 (1924)
Q Consensus 1739 ferAl~~~~~~~i~~~l~~i~~~~---------gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~---------~~~~~ 1800 (1924)
|++|++..|....|..++.+|... |++++|.+.|++++...|.+..+|+.++..+.. .++++
T Consensus 160 ~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 160 FSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 999999999989999999999999 999999999999999999999999999998865 26999
Q ss_pred HHHHHHHHHHhCC---CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000176 1801 VQAVVQRALLSLP---RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1877 (1924)
Q Consensus 1801 A~~l~~ral~~~p---~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lfer 1877 (1924)
|...|++|++..| .. ..+|..+|.+++..|++++|...|+++++..|++..+|..++.++...|+++.|...+.+
T Consensus 240 A~~~~~~al~~~p~~~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSN--PDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHCGGGGGC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCcccC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999988 44 689999999999999999999999999999999999999999999999998888876654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-12 Score=163.26 Aligned_cols=265 Identities=9% Similarity=0.008 Sum_probs=218.3
Q ss_pred cCCCCchHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-cchhhHHHHHHHHHHHHHHcC
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSS----FVWIKYMAFMLSMADVEKARSIAERALQTINI-REENEKLNIWVAYFNLENEYG 1728 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~----~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~-~ee~ekl~lWiayl~le~~~g 1728 (1924)
.++..++...|++++...|++. .+|..++.++...|++++|...|++++..... .........|..+..++...|
T Consensus 61 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 140 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG 140 (411)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 4568899999999999999987 58899999999999999999999999975311 112233467888888888899
Q ss_pred CCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHhCC-----------------hHHHHHHHHHHHHhcC----
Q 000176 1729 NPPEEAVVKVFQRALQYCDP-------KKVHLALLGLYERTEQ-----------------NKLADELLYKMIKKFK---- 1780 (1924)
Q Consensus 1729 ~~~~e~a~~vferAl~~~~~-------~~i~~~l~~i~~~~gk-----------------~e~A~~~fe~~lk~~~---- 1780 (1924)
+.+.|...|++|++..+. ...|..++.+|...|+ +++|.+.|++++..+.
T Consensus 141 --~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~ 218 (411)
T 4a1s_A 141 --RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGD 218 (411)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred --CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCC
Confidence 559999999999987421 2789999999999999 9999999999887542
Q ss_pred --CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--
Q 000176 1781 --HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH----IKFISQTAILEFKNGVADRGRSMFEGILSEYPKR-- 1851 (1924)
Q Consensus 1781 --~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~----~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~-- 1851 (1924)
....+|..++..+... ++++|...|++++...+.... ..++..+|.+++..|++++|...|++++...|..
T Consensus 219 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 298 (411)
T 4a1s_A 219 RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGE 298 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC
Confidence 2345888999999999 999999999999998765321 2488999999999999999999999999987753
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000176 1852 ----TDLWSIYLDQEIRLGDVDLIRGLFERAISL----SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921 (1924)
Q Consensus 1852 ----~dlw~~y~~le~k~gd~~~ar~lferal~~----~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~ 1921 (1924)
..+|..++.++...|++++|..+|++++.. ...+... ..|..+..+....|+.+.|...+++|++..++
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 299 REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEA-RACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHH-HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 567899999999999999999999999972 1122222 46777778888899999999999999987654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.47 E-value=3.9e-12 Score=140.49 Aligned_cols=165 Identities=10% Similarity=0.010 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000176 1749 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1827 (1924)
Q Consensus 1749 ~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~l 1827 (1924)
..+|+.++.+|.+.|++++|.+.|+++++..|.+..+|..++..+... ++++|...+++++...|.. ..+|..+|.+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS--AEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh--HHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999 9999999999999999887 5899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHH
Q 000176 1828 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEER 1907 (1924)
Q Consensus 1828 e~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~ 1907 (1924)
+...++++.|...|++++...|.+.++|..++.++.+.|++++|...|++++. +.|... ..|..........|+.++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~--~~p~~~-~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS--IKPGFI-RAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH--hcchhh-hHHHHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999 777777 688888888899999999
Q ss_pred HHHHHHHHHHH
Q 000176 1908 IEYVKQKAMEY 1918 (1924)
Q Consensus 1908 ~~~v~~rAle~ 1918 (1924)
|...|++|++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999999875
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-12 Score=156.83 Aligned_cols=265 Identities=11% Similarity=0.007 Sum_probs=214.9
Q ss_pred cCCCCchHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCc-chhhHHHHHHHHHHHHHHcC
Q 000176 1654 EKDAPRTPDEFERLVRSSPNS----SFVWIKYMAFMLSMADVEKARSIAERALQTINIR-EENEKLNIWVAYFNLENEYG 1728 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s----~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~-ee~ekl~lWiayl~le~~~g 1728 (1924)
.++.+++...|++++...|++ ..+|..++..+...|++++|...+++++...... .......+|..+..+....|
T Consensus 18 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 97 (338)
T 3ro2_A 18 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 97 (338)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHcc
Confidence 466889999999999999998 5788899999999999999999999998753211 12223467778888888889
Q ss_pred CCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHhCC--------------------hHHHHHHHHHHHHhcC-
Q 000176 1729 NPPEEAVVKVFQRALQYCDP-------KKVHLALLGLYERTEQ--------------------NKLADELLYKMIKKFK- 1780 (1924)
Q Consensus 1729 ~~~~e~a~~vferAl~~~~~-------~~i~~~l~~i~~~~gk--------------------~e~A~~~fe~~lk~~~- 1780 (1924)
+.+.|...|++|++..+. ..+|..++.+|...|+ +++|.+.|++++..+.
T Consensus 98 --~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~ 175 (338)
T 3ro2_A 98 --NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTA 175 (338)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 559999999999987542 1589999999999999 9999999999886531
Q ss_pred -----CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000176 1781 -----HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH----IKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1850 (1924)
Q Consensus 1781 -----~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~----~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk 1850 (1924)
....+|..++..+... ++++|...|++++...+.... ..++..+|.++...|++++|...|++++...|.
T Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 255 (338)
T 3ro2_A 176 LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 255 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 2355788999999999 999999999999987654321 348999999999999999999999999987765
Q ss_pred C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000176 1851 R------TDLWSIYLDQEIRLGDVDLIRGLFERAISL----SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1851 ~------~dlw~~y~~le~k~gd~~~ar~lferal~~----~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~ 1920 (1924)
. ..+|..++.++...|++++|...|++++.. ..++... ..|..........|+.+.|...+++|++..+
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 256 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG-RACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHH-HHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 4 567888999999999999999999999972 1111222 4677777888889999999999999998765
Q ss_pred h
Q 000176 1921 S 1921 (1924)
Q Consensus 1921 ~ 1921 (1924)
+
T Consensus 335 ~ 335 (338)
T 3ro2_A 335 E 335 (338)
T ss_dssp -
T ss_pred h
Confidence 4
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.8e-11 Score=142.77 Aligned_cols=225 Identities=8% Similarity=-0.119 Sum_probs=182.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHhcC
Q 000176 1671 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE----YGNPPEEAVVKVFQRALQYC 1746 (1924)
Q Consensus 1671 ~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~----~g~~~~e~a~~vferAl~~~ 1746 (1924)
+|+++..|..++..+...+++++|...|+++++.-+ ...|..+..+... .+ +.++|...|++|++..
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~-------~~a~~~lg~~~~~g~~~~~--~~~~A~~~~~~a~~~~ 72 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKE-------NSGCFNLGVLYYQGQGVEK--NLKKAASFYAKACDLN 72 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHTT
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHcCCCcCC--CHHHHHHHHHHHHHCC
Confidence 578888999999999999999999999999997211 2466667777777 77 5689999999999875
Q ss_pred CCHHHHHHHHHHHHH----hCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----c-CHHHHHHHHHHHHHhCCCCCh
Q 000176 1747 DPKKVHLALLGLYER----TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK----Q-QQEGVQAVVQRALLSLPRHKH 1817 (1924)
Q Consensus 1747 ~~~~i~~~l~~i~~~----~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~----~-~~~~A~~l~~ral~~~p~~~~ 1817 (1924)
....|..++.+|.. .+++++|...|++++.. ..+..|+.++.++.. . ++++|...|+++++.. +
T Consensus 73 -~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~ 145 (273)
T 1ouv_A 73 -YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----D 145 (273)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----C
T ss_pred -CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----c
Confidence 56888899999999 99999999999999876 478899999999988 7 9999999999999864 3
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCchhHH
Q 000176 1818 IKFISQTAILEFK----NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR----LGDVDLIRGLFERAISLSLPPKKMK 1889 (1924)
Q Consensus 1818 ~~~~~~~A~le~~----~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k----~gd~~~ar~lferal~~~~~pk~~k 1889 (1924)
...+..+|.++.. .+++++|...|++++.. .....|..++.++.. .+++++|...|++++. ..+.
T Consensus 146 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~--~~~~--- 218 (273)
T 1ouv_A 146 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACE--LENG--- 218 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH--TTCH---
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh--CCCH---
Confidence 5788889999888 88999999999999876 356788888999998 8999999999999998 3332
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 000176 1890 FLFKKYLEYEKS----VGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1890 ~lw~~yl~~E~~----~G~~~~~~~v~~rAle~ 1918 (1924)
..+.....+... .++.+.|...|++|++.
T Consensus 219 ~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 219 GGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 345555556666 78888899999888764
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-11 Score=139.40 Aligned_cols=199 Identities=13% Similarity=0.001 Sum_probs=178.1
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000176 1714 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1792 (1924)
Q Consensus 1714 l~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~ 1792 (1924)
...|..+.......| +.+.|...|+++++..|. ..+|..++.+|...|++++|.+.|++++...+....+|..++..
T Consensus 8 ~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQ--DYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--hHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 468888888888999 569999999999999886 48999999999999999999999999999999999999999999
Q ss_pred HHhc--CHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 000176 1793 LLKQ--QQEGVQAVVQRALLSLPRH-KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD 1869 (1924)
Q Consensus 1793 l~~~--~~~~A~~l~~ral~~~p~~-~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~ 1869 (1924)
+... ++++|...|++++. .|.. ....+|..+|..+...|++++|...|++++...|.+..+|..++.++.+.|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 9887 89999999999999 3322 236899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1870 LIRGLFERAISLSLPP-KKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1870 ~ar~lferal~~~~~p-k~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
.|..+|++++. ..| ... ..|.....+....|+.+.+..+++.+++.
T Consensus 165 ~A~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQS--RVEVLQA-DDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHH--HHCSCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999998 555 555 45667777888899999999998887653
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-12 Score=151.76 Aligned_cols=217 Identities=12% Similarity=0.011 Sum_probs=184.3
Q ss_pred CchHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1658 PRTPDEFERLVRS----SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1658 p~a~~~ferll~~----~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
.++...|++++.. +|++...|..++..+...|++++|...|+++++..|.. ...|..+..+....+ +.+
T Consensus 22 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~~--~~~ 94 (275)
T 1xnf_A 22 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM-----PEVFNYLGIYLTQAG--NFD 94 (275)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHTT--CHH
T ss_pred HHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHcc--CHH
Confidence 3456677888765 35678999999999999999999999999999887743 358888999989999 559
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 000176 1734 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1811 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~ 1811 (1924)
.|...|++|++..|.. .+|..++.+|...|++++|...|+++++..+.....+..++ .+... ++++|...|++++..
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY-LAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHH-HHHHhcCHHHHHHHHHHHHhc
Confidence 9999999999998864 99999999999999999999999999999988876555444 34555 999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 000176 1812 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR----TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1887 (1924)
Q Consensus 1812 ~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~----~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~ 1887 (1924)
.|... ..| ..+.+++..++.+.|...|++++...|.. ..+|..++.++.+.|+++.|...|++++. ..|..
T Consensus 174 ~~~~~--~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~ 248 (275)
T 1xnf_A 174 SDKEQ--WGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHN 248 (275)
T ss_dssp SCCCS--THH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT
T ss_pred CCcch--HHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCchh
Confidence 98874 233 47777788889999999999998776643 67899999999999999999999999998 55644
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.2e-12 Score=164.98 Aligned_cols=255 Identities=13% Similarity=0.035 Sum_probs=191.1
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFML---SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~---~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
..+|...|++++..+|+++..|..++..+. ..++.++|.+.+++|++..|.... -..++...+..+....+ ..+
T Consensus 154 y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~-~~~~l~~~~~~~~~~~~--~~~ 230 (472)
T 4g1t_A 154 NERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY-LKVLLALKLHKMREEGE--EEG 230 (472)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH-HHHHHHHHHHHCC--------C
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH-HHHHHHHHHHHHHhhhh--HHH
Confidence 668999999999999999999999887754 457788999999999987664321 11122333344444445 348
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc----------------
Q 000176 1734 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ---------------- 1796 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~---------------- 1796 (1924)
+|.+.|++|+...|.. .+|..++.+|...|++++|.+.|+++++..|.+..+|..++..+...
T Consensus 231 ~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~ 310 (472)
T 4g1t_A 231 EGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKR 310 (472)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHH
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 8999999999998874 89999999999999999999999999999999999999988776432
Q ss_pred ----CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHH-HHcCCH
Q 000176 1797 ----QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD---LWSIYLDQE-IRLGDV 1868 (1924)
Q Consensus 1797 ----~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d---lw~~y~~le-~k~gd~ 1868 (1924)
.++.|...|++++...|... .+|..+|.++...|++++|...|+++|...|+..+ ++..|+.+. ...|++
T Consensus 311 ~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (472)
T 4g1t_A 311 KLLELIGHAVAHLKKADEANDNLF--RVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCE 388 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTC--CCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCH
T ss_pred HHHhhHHHHHHHHHHHhhcCCchh--hhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCH
Confidence 36789999999999998874 78999999999999999999999999999887654 456676654 467899
Q ss_pred HHHHHHHHHHHhcCCCch------------------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000176 1869 DLIRGLFERAISLSLPPK------------------------KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919 (1924)
Q Consensus 1869 ~~ar~lferal~~~~~pk------------------------~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v 1919 (1924)
++|...|++++. +.|+ .+ ..|..........|+.+.|...|++|++.-
T Consensus 389 ~~Ai~~y~kal~--i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~-~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 389 DKAIHHFIEGVK--INQKSREKEKMKDKLQKIAKMRLSKNGADS-EALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHH--SCCCCHHHHHHHHHHHHHHHHHHHHCC-CT-THHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999998 4433 22 245555566777889999999999999853
|
| >1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 | Back alignment and structure |
|---|
Probab=99.42 E-value=4.7e-15 Score=161.12 Aligned_cols=118 Identities=17% Similarity=0.249 Sum_probs=90.2
Q ss_pred CCCCEEEEEEEEEecCeEEEEE--CCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeecccccCC
Q 000176 760 HPNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837 (1924)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f--~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~~~~ 837 (1924)
++|+++.|.|++|++||+||++ ++++.||+|.|++++.++.++++.|++||.|.|+|+++|++++|+.||+|....
T Consensus 14 ~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~~~~-- 91 (182)
T 1kl9_A 14 EVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSP-- 91 (182)
T ss_dssp CTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTTCCH--
T ss_pred CCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeecCc--
Confidence 6899999999999999999999 689999999999999999999999999999999999999999999999998753
Q ss_pred CchhhHHHHHHHHHHHHHhhcccCCCccccccccccCccEEEEEEEEEec-ceeEEEeccCCceeEEEeeee
Q 000176 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND-FGVVVSFEEHSDVYGFITHHQ 908 (1924)
Q Consensus 838 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~v~g~V~~i~~-~g~~v~l~~~~~v~g~i~~~~ 908 (1924)
.+|......++.|+.++|+|..+.+ +| +.+++ ++.|+++.+.
T Consensus 92 -------------------------~p~~~~~~~~~~g~~v~g~v~~i~~~~g--v~l~~--giegl~h~s~ 134 (182)
T 1kl9_A 92 -------------------------EEAIKCEDKFTKSKTVYSILRHVAEVLE--YTKDE--QLESLFQRTA 134 (182)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHTT--CCSHH--HHHHHHHHTH
T ss_pred -------------------------ChHHHHHHhccCCCEEEEEEEEchhhcC--CcccC--ChhheEEeee
Confidence 1244445678889999999999998 99 45543 5667665543
|
| >2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.5e-13 Score=136.47 Aligned_cols=93 Identities=25% Similarity=0.403 Sum_probs=77.4
Q ss_pred EEEeecccccccchhccccccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEE
Q 000176 1433 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512 (1924)
Q Consensus 1433 ~LSlk~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~ 1512 (1924)
.-|+|+...+||... ..++++|++|.|+|++|.+||+||+|++ ++.||||+|++++.++.++.+.|++||.|+|+
T Consensus 11 ~~~iKq~~~~p~~~~----~~~~~~G~iv~G~V~~v~~~G~fV~l~~-~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~ 85 (109)
T 2khj_A 11 SSGLVPRGSHMFNNW----VALNKKGAIVTGKVTAVDAKGATVELAD-GVEGYLRASEASRDRVEDATLVLSVGDEVEAK 85 (109)
T ss_dssp ----------CHHHH----TTTCCSSSEEEEEEEEECSSCEEEECST-TCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEE
T ss_pred ccchhhcccCHHHHH----hhcCCCCCEEEEEEEEEECCeEEEEECC-CCEEEEEHHHcCcccccChhhccCCCCEEEEE
Confidence 457888888887643 6789999999999999999999999976 89999999999999999999999999999999
Q ss_pred EEEEecCCCeeEEecccc
Q 000176 1513 ILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1513 Vl~id~e~~ri~lslK~s 1530 (1924)
|+++|++++||.||+|+.
T Consensus 86 V~~vd~~~~ki~LS~k~~ 103 (109)
T 2khj_A 86 FTGVDRKNRAISLSVRAK 103 (109)
T ss_dssp EEEEETTTTEEEEETTSS
T ss_pred EEEEECCCCEEEEEEeec
Confidence 999999999999999984
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-11 Score=157.63 Aligned_cols=263 Identities=12% Similarity=0.080 Sum_probs=182.8
Q ss_pred cCCCCchHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---cchhhHHHHHHHHH
Q 000176 1654 EKDAPRTPDEFERLVRS---------SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI---REENEKLNIWVAYF 1721 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~---------~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~---~ee~ekl~lWiayl 1721 (1924)
.++..+|...|++++.. +|.....|.+++..+..+|++++|...++++++..+. ....+...++....
T Consensus 64 ~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g 143 (472)
T 4g1t_A 64 KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEG 143 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHH
Confidence 45677888899988754 6888999999999999999999999999999974321 11111122333322
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHH---HhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-
Q 000176 1722 NLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYE---RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ- 1796 (1924)
Q Consensus 1722 ~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~---~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~- 1796 (1924)
.....++....++|.+.|++|++..|.. ..|..++.++. ..++.++|.+.|+++++..|....+|..++..+...
T Consensus 144 ~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~ 223 (472)
T 4g1t_A 144 WTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMR 223 (472)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC
T ss_pred HHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHH
Confidence 2223333112488999999999988874 66777766543 446677788888888877777777777766555433
Q ss_pred ----CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH---------------
Q 000176 1797 ----QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSI--------------- 1857 (1924)
Q Consensus 1797 ----~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~--------------- 1857 (1924)
++++|..+|++++...|.. ..+|..+|.++...|++++|...|++++...|++..+|..
T Consensus 224 ~~~~~~~~a~~~~~~al~~~~~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~ 301 (472)
T 4g1t_A 224 EEGEEEGEGEKLVEEALEKAPGV--TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNL 301 (472)
T ss_dssp ------CHHHHHHHHHHHHCSSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHHHHHHhCccH--HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhH
Confidence 5677778888888777766 4677777888888888888888887777777777665544
Q ss_pred --------------------------------------HHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH-
Q 000176 1858 --------------------------------------YLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEY- 1898 (1924)
Q Consensus 1858 --------------------------------------y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~- 1898 (1924)
++.++...|++++|...|++++.....+.....++..|..+
T Consensus 302 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~ 381 (472)
T 4g1t_A 302 RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQ 381 (472)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 34445566888888888888888544444433456666654
Q ss_pred HHHcCCHHHHHHHHHHHHHH
Q 000176 1899 EKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1899 E~~~G~~~~~~~v~~rAle~ 1918 (1924)
+...|+.+.|...|.+|++.
T Consensus 382 ~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 382 LYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp HHTSSCHHHHHHHHHHHHHS
T ss_pred HHHCCCHHHHHHHHHHHHhc
Confidence 44568888888888888765
|
| >1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5 | Back alignment and structure |
|---|
Probab=99.40 E-value=3.1e-13 Score=129.41 Aligned_cols=78 Identities=24% Similarity=0.376 Sum_probs=72.3
Q ss_pred cccccCCCcEEEEEEEEeecceEEEEEecC-ceeEEeecc-ccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecc
Q 000176 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVS-ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528 (1924)
Q Consensus 1451 ~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~-~v~gl~h~s-els~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK 1528 (1924)
.+...++|+++.|+|+ |++||+||+|.+. +++||+|+| ++++.++.++++.| +||.|+++|+++|++++||+||+|
T Consensus 5 ~y~~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI~lslk 82 (88)
T 1luz_A 5 CYSLPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVNYK 82 (88)
T ss_dssp CSCCCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEETTTTEEEEEEE
T ss_pred EecCCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEEECCCCEEEEEEe
Confidence 4667799999999999 9999999999753 799999999 99999998899999 999999999999999999999999
Q ss_pred cc
Q 000176 1529 SS 1530 (1924)
Q Consensus 1529 ~s 1530 (1924)
+.
T Consensus 83 ~~ 84 (88)
T 1luz_A 83 RM 84 (88)
T ss_dssp EE
T ss_pred ec
Confidence 84
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.8e-12 Score=152.11 Aligned_cols=245 Identities=16% Similarity=0.125 Sum_probs=186.7
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCc---chhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Q 000176 1670 SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIR---EENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1746 (1924)
Q Consensus 1670 ~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~---ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~ 1746 (1924)
.+|+....|..++..+...|++++|...++++++..... ........|..+..++...+ +.++|...|++|+...
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN--KYKDAANLLNDALAIR 99 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHH
Confidence 357788899999999999999999999999999743211 12234567888888888899 5599999999999873
Q ss_pred ------CC---HHHHHHHHHHHHHhCChHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHhc-CHHHHHHHHHHH
Q 000176 1747 ------DP---KKVHLALLGLYERTEQNKLADELLYKMIKKF--------KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRA 1808 (1924)
Q Consensus 1747 ------~~---~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~--------~~~~~vw~~~a~~l~~~-~~~~A~~l~~ra 1808 (1924)
+. ..+|..++.+|...|++++|...|++++..+ +....+|..++.++... ++++|..+|+++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22 2889999999999999999999999999875 34567789999999999 999999999999
Q ss_pred HHhC-----C-CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHH------HHHcCC
Q 000176 1809 LLSL-----P-RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK---------RTDLWSIYLDQ------EIRLGD 1867 (1924)
Q Consensus 1809 l~~~-----p-~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk---------~~dlw~~y~~l------e~k~gd 1867 (1924)
+... + ......+|..+|.+++..|++++|...|++++...|. ...+|.....+ ....+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (311)
T 3nf1_A 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS 259 (311)
T ss_dssp HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHH
Confidence 9872 1 1223578999999999999999999999999975432 22244433333 334566
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000176 1868 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919 (1924)
Q Consensus 1868 ~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v 1919 (1924)
+..+...|++++. ..|..+ ..|..+.......|+.+.|..++++|++.-
T Consensus 260 ~~~a~~~~~~~~~--~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 260 FGEYGGWYKACKV--DSPTVT-TTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp SCCCC-----------CHHHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCC--CCchHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 6677788888887 666666 688888889999999999999999999864
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.8e-11 Score=143.59 Aligned_cols=222 Identities=11% Similarity=-0.014 Sum_probs=188.4
Q ss_pred HcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCCh
Q 000176 1687 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQN 1765 (1924)
Q Consensus 1687 ~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~ 1765 (1924)
..+++++|...|+++++..+. ........|..+.......| +.+.|...|++|++..|. ..+|..++.+|...|++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRAL-TDDERAQLLYERGVLYDSLG--LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCC-CHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred ccchHHHHHHHHHHHHhcccc-cCchhHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 457899999999999976432 12334578888899989999 559999999999999887 49999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000176 1766 KLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGI 1844 (1924)
Q Consensus 1766 e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~a 1844 (1924)
++|...|++++...|.+..+|..++..+... ++++|...|+++++..|.... .+ .+..+....|++++|...|+++
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~-~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF--RS-LWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HH-HHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChH--HH-HHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999999999999999999999 999999999999999998742 22 2333446679999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1845 LSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK----MKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1845 L~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~----~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
+...|.....|. .+.++...++.+.|...|++++. ..|.. . ..|..........|+.+.|...|++|++.
T Consensus 171 ~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 171 FEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADAT--DNTSLAEHLS-ETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCC--SHHHHHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhc--cccccccccc-HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 999998877776 66777788899999999999987 44432 3 57888888899999999999999999753
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.1e-11 Score=143.47 Aligned_cols=216 Identities=10% Similarity=0.043 Sum_probs=180.7
Q ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CCcchhhHHHHHHHHHHHHHHcCCCCH
Q 000176 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI--NIREENEKLNIWVAYFNLENEYGNPPE 1732 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i--~~~ee~ekl~lWiayl~le~~~g~~~~ 1732 (1924)
++..++...++. .+|.+...+..++.++...++.++|.+.+++++..- |.. ..+|+.+..+....| +.
T Consensus 48 g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~-----~~~~~~la~~~~~~g--~~ 117 (291)
T 3mkr_A 48 RKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTN-----TTFLLMAASIYFYDQ--NP 117 (291)
T ss_dssp TCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSC-----HHHHHHHHHHHHHTT--CH
T ss_pred CCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCC-----HHHHHHHHHHHHHCC--CH
Confidence 334445544443 255567777888888999999999999999999652 432 347888888888999 56
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHH--HHHHHHhc-CHHHHHHHHHHHH
Q 000176 1733 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLR--RVQRLLKQ-QQEGVQAVVQRAL 1809 (1924)
Q Consensus 1733 e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~--~a~~l~~~-~~~~A~~l~~ral 1809 (1924)
++|.+.|++ .+....|..++.+|.+.|++++|...|++++...|+.....+. |..++... ++++|..+|++++
T Consensus 118 ~~Al~~l~~----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l 193 (291)
T 3mkr_A 118 DAALRTLHQ----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMA 193 (291)
T ss_dssp HHHHHHHTT----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 999999998 3446899999999999999999999999999998877644443 44555555 8999999999999
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCCchhH
Q 000176 1810 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL-IRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1810 ~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~-ar~lferal~~~~~pk~~ 1888 (1924)
...|.+ +.+|...|.++.+.|++++|...|+++|...|++.++|..++.++...|+.+. +..+|++++. +.|+.+
T Consensus 194 ~~~p~~--~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~ 269 (291)
T 3mkr_A 194 DKCSPT--LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHP 269 (291)
T ss_dssp HHSCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCH
T ss_pred HhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCCh
Confidence 999976 68999999999999999999999999999999999999999999999999865 7899999998 777776
|
| >2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.39 E-value=8.6e-13 Score=133.78 Aligned_cols=93 Identities=28% Similarity=0.447 Sum_probs=74.9
Q ss_pred EEEeecccccccchhccccccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcc-cccCcccccCCCcEEEE
Q 000176 1433 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED-HVDNIETIYRAGEKVKV 1511 (1924)
Q Consensus 1433 ~LSlk~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~-~~~~~~~~~~~Gd~Vk~ 1511 (1924)
.-|+|+...+||.. ...++++|+++.|+|++|.+||+||+|++ ++.||||+|++++. ++.++.+.|++||.|+|
T Consensus 10 ~~~~k~~~~~p~~~----~~~~~~~G~~~~G~V~~v~~~G~FV~l~~-~~~Glvhisel~~~~~~~~~~~~~~vGd~V~v 84 (115)
T 2khi_A 10 HSSGLVPRGSHWVA----IAKRYPEGTKLTGRVTNLTDYGCFVEIEE-GVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEV 84 (115)
T ss_dssp -----------CCC----SSCSSCSSCEEEEEEEEEETTEEEEECST-TCEEEEETTSSSCSSTTCSSTTTCCTTCEEEE
T ss_pred ccchhhcccCCHHH----HhhcCCCCCEEEEEEEEEECCEEEEEECC-CCEEEEEHHHCCccccccCcccEECCCCEEEE
Confidence 34788888877654 25689999999999999999999999976 79999999999984 67788899999999999
Q ss_pred EEEEEecCCCeeEEecccc
Q 000176 1512 KILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1512 ~Vl~id~e~~ri~lslK~s 1530 (1924)
+|+++|.+++||.||+|+.
T Consensus 85 kV~~vd~~~~rI~lslk~~ 103 (115)
T 2khi_A 85 MVLDIDEERRRISLGLKQC 103 (115)
T ss_dssp EEEEEETTTTEEEECCCCC
T ss_pred EEEEEECCCCEEEEEEEec
Confidence 9999999999999999985
|
| >2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-12 Score=122.77 Aligned_cols=72 Identities=24% Similarity=0.461 Sum_probs=67.6
Q ss_pred ccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
++++|+++.|+|+++.+||+||+|++ +++||||+|++++.++ +.|++||.|+|+|+++|++++||+||+|+.
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~~-~~~Gllh~sel~~~~~----~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~~ 73 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLNE-QVRGLLRPRDMISLRL----ENLNVGDEIIVQAIDVRPEKREIDFKYIPL 73 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEET-TEEEEECGGGCSSCCG----GGCCTTCEEEEEEEEEETTTTEEEEEECSC
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEECC-CCEEEEEHHHCCcccc----eeeCCCCEEEEEEEEEECCCCEEEEEEeec
Confidence 57899999999999999999999987 8999999999998765 679999999999999999999999999985
|
| >2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A | Back alignment and structure |
|---|
Probab=99.38 E-value=5.5e-14 Score=152.14 Aligned_cols=104 Identities=18% Similarity=0.258 Sum_probs=88.3
Q ss_pred CCCCEEEEEEEEEeeceEEEEeC--CCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecccccc
Q 000176 1366 SPNMIVQGYVKNVTSKGCFIMLS--RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1443 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~fV~l~--~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~~ 1443 (1924)
++|+++.|+|++++++|+||+|. ++++|+||+|+|+|.++.++.+.|++||.|.|+|+++|+++++|.||+|....+|
T Consensus 14 ~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~~~~~~ 93 (175)
T 2a19_A 14 EIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRRVSSED 93 (175)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTTCCHHH
T ss_pred CCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEecCcCh
Confidence 48999999999999999999994 7899999999999999999999999999999999999999999999999988877
Q ss_pred cchhccccccccCCCcEEEEEEEEee-cceE
Q 000176 1444 ASQSEINNLSNLHVGDIVIGQIKRVE-SYGL 1473 (1924)
Q Consensus 1444 ~~~~~~~~~~~l~~G~~v~G~V~~v~-~~Gv 1473 (1924)
|.. ....+++|+++.|+|+++. +||+
T Consensus 94 ~~~----~~~~~~~g~~v~g~V~~i~~~~G~ 120 (175)
T 2a19_A 94 IIK----CEEKYQKSKTVHSILRYCAEKFQI 120 (175)
T ss_dssp HHH----HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHH----HHHhccCCCcceEEEEEchhhcCC
Confidence 653 3567899999999999998 7887
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.3e-11 Score=138.06 Aligned_cols=212 Identities=10% Similarity=0.024 Sum_probs=170.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-
Q 000176 1671 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK- 1749 (1924)
Q Consensus 1671 ~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~- 1749 (1924)
.|.++..|+..+..+...+++++|...|+++++..|... ...|..+.......+ +.++|...|++|++..|..
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~ 76 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD----SVTAYNCGVCADNIK--KYKEAADYFDIAIKKNYNLA 76 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTTCSHH
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC----cHHHHHHHHHHHHhh--cHHHHHHHHHHHHHhCcchH
Confidence 456789999999999999999999999999998776211 235666777778888 5599999999999999986
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSC-------KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFI 1821 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~-------~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~ 1821 (1924)
.+|..++.+|...|++++|.+.|+++++.+|.++ .+|..++..+... ++++|...|+++++..|...+..+|
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 156 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDAL 156 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHH
Confidence 8999999999999999999999999999999988 6699999999999 9999999999999998871126899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000176 1822 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1898 (1924)
Q Consensus 1822 ~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~ 1898 (1924)
..+|.+++.. ++.+++++....+.....+. .......+.+++|...|++++. +.|+.. .++......
T Consensus 157 ~~l~~~~~~~-----~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~--l~p~~~-~~~~~l~~i 223 (228)
T 4i17_A 157 YSLGVLFYNN-----GADVLRKATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVT--LSPNRT-EIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHH-----HHHHHHHHGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHH--HCTTCH-HHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHHHHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhh--cCCCCH-HHHHHHHHH
Confidence 9999998754 45567777776666544332 2234456678899999999998 667666 455544443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.37 E-value=8e-12 Score=160.47 Aligned_cols=211 Identities=9% Similarity=-0.075 Sum_probs=183.8
Q ss_pred CHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHH
Q 000176 1690 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE-EAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKL 1767 (1924)
Q Consensus 1690 e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~-e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~ 1767 (1924)
.+++|...+++++...+. ...+|..+...+...+ +. ++|.+.|++|++..|. ...|..++.+|...|++++
T Consensus 83 ~~~~al~~l~~~~~~~~~-----~a~~~~~lg~~~~~~g--~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~ 155 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQV-----EAQALMLKGKALNVTP--DYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTS 155 (474)
T ss_dssp HHHHHHHHHHHHHTTCCC-----CHHHHHHHHHHHTSSS--SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhccCch-----hHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 356666777776654442 2458888888888888 67 9999999999999987 4999999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhc----------CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc------
Q 000176 1768 ADELLYKMIKKFKHSCKVWLRRVQRLLKQ----------QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN------ 1831 (1924)
Q Consensus 1768 A~~~fe~~lk~~~~~~~vw~~~a~~l~~~----------~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~------ 1831 (1924)
|.+.|++++...|. ..+|..++..+... ++++|...|++|++..|.+ ..+|..+|.++...
T Consensus 156 A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~~~ 232 (474)
T 4abn_A 156 AHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD--GRSWYILGNAYLSLYFNTGQ 232 (474)
T ss_dssp HHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHhhcc
Confidence 99999999999887 79999999988762 6899999999999999987 58999999999998
Q ss_pred --CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHH
Q 000176 1832 --GVADRGRSMFEGILSEYP---KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE 1906 (1924)
Q Consensus 1832 --g~~e~Ar~lfe~aL~~~P---k~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~ 1906 (1924)
|++++|...|+++++..| .+..+|..++.++...|++++|...|++++. +.|... ..|..+.......|+.+
T Consensus 233 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~-~a~~~l~~~~~~lg~~~ 309 (474)
T 4abn_A 233 NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAWP-EPQQREQQLLEFLSRLT 309 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999999999999 777777 57888888888788877
Q ss_pred HHHHHHH
Q 000176 1907 RIEYVKQ 1913 (1924)
Q Consensus 1907 ~~~~v~~ 1913 (1924)
++...+.
T Consensus 310 eAi~~~~ 316 (474)
T 4abn_A 310 SLLESKG 316 (474)
T ss_dssp HHHHHTT
T ss_pred HHHHHhc
Confidence 7765543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.37 E-value=8.6e-12 Score=156.17 Aligned_cols=244 Identities=9% Similarity=-0.071 Sum_probs=199.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC------
Q 000176 1673 NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC------ 1746 (1924)
Q Consensus 1673 ~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~------ 1746 (1924)
.....+...+..+...|++++|+..|+++++..|... .....+|..+...+...| +.+.|...|++|++..
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~ 122 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL-RTLSAIYSQLGNAYFYLG--DYNKAMQYHKHDLTLAKSMNDR 122 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-HHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccCh-hHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHccCc
Confidence 3455667788889999999999999999998765421 122357888888888889 5599999999999873
Q ss_pred CC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHhc-C-----------------HHHH
Q 000176 1747 DP-KKVHLALLGLYERTEQNKLADELLYKMIKKF------KHSCKVWLRRVQRLLKQ-Q-----------------QEGV 1801 (1924)
Q Consensus 1747 ~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~------~~~~~vw~~~a~~l~~~-~-----------------~~~A 1801 (1924)
+. ..+|..++.+|...|++++|...|++++..+ +....+|..++..+... + +++|
T Consensus 123 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A 202 (411)
T 4a1s_A 123 LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRA 202 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHH
Confidence 21 2889999999999999999999999999874 34466899999999988 8 9999
Q ss_pred HHHHHHHHHhCCCC----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHH
Q 000176 1802 QAVVQRALLSLPRH----KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD------LWSIYLDQEIRLGDVDLI 1871 (1924)
Q Consensus 1802 ~~l~~ral~~~p~~----~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d------lw~~y~~le~k~gd~~~a 1871 (1924)
...|++++...+.. ....+|..+|.+++..|++++|...|++++...|...+ +|..++.++...|++++|
T Consensus 203 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 282 (411)
T 4a1s_A 203 VEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDA 282 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHH
Confidence 99999998865321 12468999999999999999999999999998765333 789999999999999999
Q ss_pred HHHHHHHHhcCCCch-----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000176 1872 RGLFERAISLSLPPK-----KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921 (1924)
Q Consensus 1872 r~lferal~~~~~pk-----~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~ 1921 (1924)
...|++++. +.++ ..-..|..+..+....|+.+.|...+++|++....
T Consensus 283 ~~~~~~al~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 283 AEHYKRTLA--LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 999999998 3322 11246777778888899999999999999987654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-11 Score=165.14 Aligned_cols=163 Identities=15% Similarity=0.105 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000176 1714 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1792 (1924)
Q Consensus 1714 l~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~ 1792 (1924)
...|..+.+++...| +.++|.+.|++|++..|.. ..|..++.+|.+.|++++|.+.|+++++..|+...+|++++..
T Consensus 9 a~al~nLG~~~~~~G--~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQG--NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 456777778888888 4588888888888888774 8888888888888888888888888888888888888888888
Q ss_pred HHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 000176 1793 LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1871 (1924)
Q Consensus 1793 l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~a 1871 (1924)
+... ++++|.+.|++|++..|.+ ..+|..+|.++...|++++|...|+++|+..|++.++|..++.++...|+++.|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~--~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAF--ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 8888 8888888888888888876 578888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHh
Q 000176 1872 RGLFERAIS 1880 (1924)
Q Consensus 1872 r~lferal~ 1880 (1924)
...|++++.
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888887
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-10 Score=137.09 Aligned_cols=212 Identities=12% Similarity=-0.051 Sum_probs=188.0
Q ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHH----
Q 000176 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLS----MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE---- 1726 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~----~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~---- 1726 (1924)
++..++...|++++. |++...|..++.++.. .+++++|...|++|++.-. ...|..+..+...
T Consensus 20 ~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-------~~a~~~lg~~~~~g~~~ 90 (273)
T 1ouv_A 20 KDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY-------SNGCHLLGNLYYSGQGV 90 (273)
T ss_dssp TCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHTSSS
T ss_pred CCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHhCCCCc
Confidence 457788899999987 8889999999999999 9999999999999997531 3467777777777
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----hCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----c-C
Q 000176 1727 YGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER----TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK----Q-Q 1797 (1924)
Q Consensus 1727 ~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~----~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~----~-~ 1797 (1924)
.+ +.++|...|++|++.. ....|..++.+|.. .+++++|...|++++... ....|..++..+.. . +
T Consensus 91 ~~--~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~ 165 (273)
T 1ouv_A 91 SQ--NTNKALQYYSKACDLK-YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKD 165 (273)
T ss_dssp CC--CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCC
T ss_pred cc--CHHHHHHHHHHHHHcC-CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCC
Confidence 77 5699999999999874 67899999999999 999999999999999864 78999999999998 7 9
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHH
Q 000176 1798 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFK----NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR----LGDVD 1869 (1924)
Q Consensus 1798 ~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~----~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k----~gd~~ 1869 (1924)
+++|...|+++++.. +...+..+|.++.. .+++++|...|++++...| ...+..++.++.. .++++
T Consensus 166 ~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~ 239 (273)
T 1ouv_A 166 LKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEK 239 (273)
T ss_dssp HHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCST
T ss_pred HHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHH
Confidence 999999999999873 36899999999999 9999999999999999866 7889999999998 99999
Q ss_pred HHHHHHHHHHhcCCCchhH
Q 000176 1870 LIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1870 ~ar~lferal~~~~~pk~~ 1888 (1924)
+|...|++++. +.|..+
T Consensus 240 ~A~~~~~~a~~--~~~~~a 256 (273)
T 1ouv_A 240 QAIENFKKGCK--LGAKGA 256 (273)
T ss_dssp THHHHHHHHHH--HTCHHH
T ss_pred HHHHHHHHHHH--cCCHHH
Confidence 99999999999 556555
|
| >2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-13 Score=149.85 Aligned_cols=103 Identities=20% Similarity=0.293 Sum_probs=84.0
Q ss_pred CCCEEEEEEEEEecCeEEEEE--CCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeecccccCCC
Q 000176 761 PNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838 (1924)
Q Consensus 761 ~G~~~~G~V~~i~~~G~fV~f--~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~~~~~ 838 (1924)
+|+++.|.|++|++||+||++ ++++.||+|.|++++.++.++.+.|++||.|.|+|+++|++++|+.||+|....
T Consensus 15 ~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~~~~--- 91 (175)
T 2a19_A 15 IDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRRVSS--- 91 (175)
T ss_dssp TTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTTCCH---
T ss_pred CCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEecCc---
Confidence 899999999999999999999 589999999999999999999999999999999999999999999999998753
Q ss_pred chhhHHHHHHHHHHHHHhhcccCCCccccccccccCccEEEEEEEEEe-ccee
Q 000176 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN-DFGV 890 (1924)
Q Consensus 839 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~v~g~V~~i~-~~g~ 890 (1924)
.+|......+++|+.++|+|..+. ++|+
T Consensus 92 ------------------------~~~~~~~~~~~~g~~v~g~V~~i~~~~G~ 120 (175)
T 2a19_A 92 ------------------------EDIIKCEEKYQKSKTVHSILRYCAEKFQI 120 (175)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ------------------------ChHHHHHHhccCCCcceEEEEEchhhcCC
Confidence 124444567888999999988888 5676
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.4e-11 Score=149.69 Aligned_cols=245 Identities=10% Similarity=-0.048 Sum_probs=201.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC---C
Q 000176 1672 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD---P 1748 (1924)
Q Consensus 1672 P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~---~ 1748 (1924)
+.....|...+..+...|++++|...|+++++..|... .....+|..+...+...| +.+.|...|++|+.... .
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~ 82 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL-KTLSAIYSQLGNAYFYLH--DYAKALEYHHHDLTLARTIGD 82 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-HHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHhccc
Confidence 45677899999999999999999999999998765422 122357888888888899 55999999999987632 1
Q ss_pred ----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhc-C--------------------
Q 000176 1749 ----KKVHLALLGLYERTEQNKLADELLYKMIKKFKHS------CKVWLRRVQRLLKQ-Q-------------------- 1797 (1924)
Q Consensus 1749 ----~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~------~~vw~~~a~~l~~~-~-------------------- 1797 (1924)
..+|..++.+|...|++++|...|++++..++.. ..+|..++..+... +
T Consensus 83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~ 162 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA 162 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH
Confidence 2789999999999999999999999999876422 55889999999988 8
Q ss_pred HHHHHHHHHHHHHhCCCCC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCC
Q 000176 1798 QEGVQAVVQRALLSLPRHK----HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD------LWSIYLDQEIRLGD 1867 (1924)
Q Consensus 1798 ~~~A~~l~~ral~~~p~~~----~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d------lw~~y~~le~k~gd 1867 (1924)
+++|...|++++...+... ...++..+|.+++..|++++|...|++++...|+..+ +|..++.++...|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 9999999999988643221 2468999999999999999999999999988765433 78999999999999
Q ss_pred HHHHHHHHHHHHhcCCCchh-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000176 1868 VDLIRGLFERAISLSLPPKK-----MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921 (1924)
Q Consensus 1868 ~~~ar~lferal~~~~~pk~-----~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~ 1921 (1924)
+++|...|++++. +.+.. .-..|..........|+.+.|...+++|++....
T Consensus 243 ~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 243 FETASEYYKKTLL--LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp HHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH--HHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 9999999999997 22221 1246777777888899999999999999987554
|
| >2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.3e-12 Score=133.25 Aligned_cols=77 Identities=32% Similarity=0.702 Sum_probs=73.6
Q ss_pred cccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1453 ~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
.++++|++|.|+|++|.+||+||+|.+ ++.||||+|++++.++.++.+.|++||.|+|+|+++|.++++|.||+|+.
T Consensus 3 ~~~~vG~iv~G~V~~i~~~G~FV~l~~-~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk~~ 79 (130)
T 2k4k_A 3 AKFEVGSVYTGKVTGLQAYGAFVALDE-ETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIRAT 79 (130)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEET-TEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESHHH
T ss_pred CcCCCCCEEEEEEEEEeCCeEEEEECC-CcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEEEeec
Confidence 478999999999999999999999986 89999999999999999999999999999999999999999999999985
|
| >2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.1e-12 Score=128.77 Aligned_cols=95 Identities=25% Similarity=0.298 Sum_probs=76.6
Q ss_pred EEEecccccchhccCCCCcCccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCc-ccccCcccCCCCCCEEEEEE
Q 000176 738 LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD-GQRADLSKTYYVGQSVRSNI 816 (1924)
Q Consensus 738 ~ls~K~sl~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~-~~~~~~~~~f~~Gq~V~~~V 816 (1924)
.-|+|+...++|..+. .++++|+++.|.|++++++|+||++.+++.||+|.|++++ .+..++.+.|++||.|+|+|
T Consensus 10 ~~~~k~~~~~p~~~~~---~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV 86 (115)
T 2khi_A 10 HSSGLVPRGSHWVAIA---KRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMV 86 (115)
T ss_dssp -----------CCCSS---CSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEE
T ss_pred ccchhhcccCCHHHHh---hcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCccccccCcccEECCCCEEEEEE
Confidence 3467888888887754 4588999999999999999999999999999999999997 46778889999999999999
Q ss_pred EEeeCCCCeEEEeeccccc
Q 000176 817 LDVNSETGRITLSLKQSCC 835 (1924)
Q Consensus 817 ~~id~~~~r~~lSlk~~~~ 835 (1924)
+++|++++|+.||+|+...
T Consensus 87 ~~vd~~~~rI~lslk~~~~ 105 (115)
T 2khi_A 87 LDIDEERRRISLGLKQCKA 105 (115)
T ss_dssp EEEETTTTEEEECCCCCCS
T ss_pred EEEECCCCEEEEEEEecCc
Confidence 9999999999999998643
|
| >1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=8.2e-14 Score=163.22 Aligned_cols=108 Identities=16% Similarity=0.218 Sum_probs=100.1
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeC--CCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeeccccc
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLS--RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1442 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~--~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~ 1442 (1924)
+++|+++.|+|++++++|+||+|+ ++++|+||+++++|.++.++.+.|++||.|.|+|+++|+++++|.||+|....+
T Consensus 11 ~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~~~~~ 90 (308)
T 1q8k_A 11 PEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSKRRVSPE 90 (308)
T ss_dssp CSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEECSSCCHH
T ss_pred CCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEEecccC
Confidence 569999999999999999999998 689999999999999999999999999999999999999999999999998877
Q ss_pred ccchhccccccccCCCcEEEEEEEEeec-ceEEEE
Q 000176 1443 TASQSEINNLSNLHVGDIVIGQIKRVES-YGLFIT 1476 (1924)
Q Consensus 1443 ~~~~~~~~~~~~l~~G~~v~G~V~~v~~-~GvFV~ 1476 (1924)
||.. ....+++|+++.|+|+++.+ ||+|++
T Consensus 91 p~~~----~~~~~~~G~~v~G~V~~v~~~~G~fi~ 121 (308)
T 1q8k_A 91 EAIK----CEDKFTKSKTVYSILRHVAEVLEYTKD 121 (308)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred hHHH----HHHHccCCCeeEEEEEEcccccCCccC
Confidence 7654 35688999999999999998 699975
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.5e-11 Score=145.88 Aligned_cols=242 Identities=9% Similarity=-0.051 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC------
Q 000176 1675 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP------ 1748 (1924)
Q Consensus 1675 ~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~------ 1748 (1924)
...|...+..+...|++++|...|+++++..|.. ......+|..+.......| +.+.|...|++|++....
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~ 81 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTED-LKTLSAIYSQLGNAYFYLH--DYAKALEYHHHDLTLARTIGDQLG 81 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC-HHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCccc-HHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhcccccHH
Confidence 4567788889999999999999999999875542 2222467778888888889 559999999999877421
Q ss_pred -HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhc-C--------------------HHH
Q 000176 1749 -KKVHLALLGLYERTEQNKLADELLYKMIKKFKHS------CKVWLRRVQRLLKQ-Q--------------------QEG 1800 (1924)
Q Consensus 1749 -~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~------~~vw~~~a~~l~~~-~--------------------~~~ 1800 (1924)
..+|..++.+|...|++++|.+.|++++...+.. ..+|..++..+... + +++
T Consensus 82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (338)
T 3ro2_A 82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQA 161 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHH
Confidence 2789999999999999999999999999876432 44888999999888 8 999
Q ss_pred HHHHHHHHHHhCCCC----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHH
Q 000176 1801 VQAVVQRALLSLPRH----KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR------TDLWSIYLDQEIRLGDVDL 1870 (1924)
Q Consensus 1801 A~~l~~ral~~~p~~----~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~------~dlw~~y~~le~k~gd~~~ 1870 (1924)
|...|++++...+.. ....++..+|.+++..|++++|...|++++...|.. ..+|..++.++...|++++
T Consensus 162 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 241 (338)
T 3ro2_A 162 AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 241 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999998764321 124688999999999999999999999999876542 2378999999999999999
Q ss_pred HHHHHHHHHhcCCCchh-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000176 1871 IRGLFERAISLSLPPKK-----MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921 (1924)
Q Consensus 1871 ar~lferal~~~~~pk~-----~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~ 1921 (1924)
|..+|++++. +.+.. .-..|..........|+.+.|...+++|++....
T Consensus 242 A~~~~~~al~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 242 ASEYYKKTLL--LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 9999999997 22221 1246777777888899999999999999987654
|
| >1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5 | Back alignment and structure |
|---|
Probab=99.33 E-value=2e-12 Score=132.16 Aligned_cols=110 Identities=29% Similarity=0.411 Sum_probs=99.5
Q ss_pred EEechhhhccCCCcccccCCcEEEEEEeeeeceeEEEEecCCcceeeccCCCCCC-----CCCCccCCCcEEEEEEEEEc
Q 000176 214 LSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSID 288 (1924)
Q Consensus 214 LSl~p~~vn~~l~~~~l~~g~~l~~~V~svedhG~ild~Gi~~~~gFl~~~~~~~-----~~~~~l~~G~~~~~~v~~~~ 288 (1924)
+||+|+.+|+.++.+++.+|+++.|.|++|+|+|+.+++|..+..||++.++... ..+..+++||.+.|.|.+++
T Consensus 3 ~sl~P~~vn~~~~~~~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd 82 (119)
T 1wi5_A 3 SGSSGKNVNRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVK 82 (119)
T ss_dssp CCCCCSCSSCCCCTTTCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECC
T ss_pred cccCHHHhhccccHhcCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecccccccccCccCEeCCCCEEEEEEEEEe
Confidence 6899999999999999999999999999999999999999777889998876410 11237999999999999999
Q ss_pred CCCcEEEEccCccccccccccCcccccccccCCCc
Q 000176 289 RTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGM 323 (1924)
Q Consensus 289 ~~~~~v~ls~~~~~~~~~~~~~~~~~~~~~l~pG~ 323 (1924)
..++.+.||+.+..+.++.+++.+.+|+++|+||.
T Consensus 83 ~~~~~i~Lslk~~~l~~~~~~~~~~~~~~~l~p~~ 117 (119)
T 1wi5_A 83 GNGGVVSLSVGHSEVSTAIATEQQSWNLNNLSGPS 117 (119)
T ss_dssp TTSCEEEEECCCCCSCCCCCCSSCCCCCCCCCCCC
T ss_pred CCCCEEEEEEchhhcccceeeccCccChhhccCCC
Confidence 88899999999999999999998999999999995
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.8e-11 Score=161.86 Aligned_cols=167 Identities=12% Similarity=0.023 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
..|..++.+|.+.|++++|.+.|+++++..|+...+|++++..+.+. ++++|.+.|++|++..|.+ ..+|..+|.++
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~--~~a~~nLg~~l 87 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF--ADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999 9999999999999999987 58999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1908 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~ 1908 (1924)
...|++++|...|+++++..|++.++|..++.++...|++++|...|++|+. +.|+.. ..|..+.......|+.+++
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~-~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFP-DAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCH-HHHHHHHHHHHHTTCCTTH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCh-HHHhhhhhHHHhcccHHHH
Confidence 9999999999999999999999999999999999999999999999999999 788888 6888888999999999999
Q ss_pred HHHHHHHHHHHHh
Q 000176 1909 EYVKQKAMEYVES 1921 (1924)
Q Consensus 1909 ~~v~~rAle~v~~ 1921 (1924)
...+++|++....
T Consensus 165 ~~~~~kal~l~~~ 177 (723)
T 4gyw_A 165 DERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChh
Confidence 9999999998765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.5e-11 Score=135.59 Aligned_cols=192 Identities=10% Similarity=0.026 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000176 1715 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD--PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1792 (1924)
Q Consensus 1715 ~lWiayl~le~~~g~~~~e~a~~vferAl~~~~--~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~ 1792 (1924)
..|..........+ +.++|...|++|++..| ....|..++.+|...|++++|...|+++++..|....+|..++..
T Consensus 8 ~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKNEGNDALNAK--NYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc--CHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 46888888888889 45999999999999985 458888899999999999999999999999999999999999999
Q ss_pred HHhc-CHHHHHHHHHHHHHhCCCCChH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH
Q 000176 1793 LLKQ-QQEGVQAVVQRALLSLPRHKHI-----KFISQTAILEFKNGVADRGRSMFEGILSEYPK--RTDLWSIYLDQEIR 1864 (1924)
Q Consensus 1793 l~~~-~~~~A~~l~~ral~~~p~~~~~-----~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk--~~dlw~~y~~le~k 1864 (1924)
+... ++++|...|+++++..|.+... .+|...|.+++..|++++|...|++++...|+ ...+|..++.++..
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 9999 9999999999999999987433 67999999999999999999999999999999 88999999999865
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1865 LGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1865 ~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
. ++.+++++.. +.+.... .+.. ..+...+.++.|...+++|++.
T Consensus 166 ~-----~~~~~~~a~~--~~~~~~~-~~~~--~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 166 N-----GADVLRKATP--LASSNKE-KYAS--EKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp H-----HHHHHHHHGG--GTTTCHH-HHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHh--cccCCHH-HHHH--HHHHHHHHHHHHHHHHHHHhhc
Confidence 4 4566777776 3333332 2222 2234456688899999999875
|
| >2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.30 E-value=4e-12 Score=127.74 Aligned_cols=94 Identities=17% Similarity=0.180 Sum_probs=78.5
Q ss_pred EEEecccccchhccCCCCcCccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEE
Q 000176 738 LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817 (1924)
Q Consensus 738 ~ls~K~sl~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~ 817 (1924)
.-|+|+...++|+.+. .++++|+++.|.|++++++|+||++.+++.||+|.+++++.+..++.+.|++||.|.|+|+
T Consensus 11 ~~~iKq~~~~p~~~~~---~~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~ 87 (109)
T 2khj_A 11 SSGLVPRGSHMFNNWV---ALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFT 87 (109)
T ss_dssp ----------CHHHHT---TTCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEE
T ss_pred ccchhhcccCHHHHHh---hcCCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCcccccChhhccCCCCEEEEEEE
Confidence 4467888889988754 4588999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCeEEEeecccc
Q 000176 818 DVNSETGRITLSLKQSC 834 (1924)
Q Consensus 818 ~id~~~~r~~lSlk~~~ 834 (1924)
++|++++++.||++...
T Consensus 88 ~vd~~~~ki~LS~k~~~ 104 (109)
T 2khj_A 88 GVDRKNRAISLSVRAKD 104 (109)
T ss_dssp EEETTTTEEEEETTSSS
T ss_pred EEECCCCEEEEEEeecC
Confidence 99999999999999764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-10 Score=127.56 Aligned_cols=163 Identities=13% Similarity=0.017 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000176 1714 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1792 (1924)
Q Consensus 1714 l~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~ 1792 (1924)
...|..+.......+ +.+.|...|+++++..|. ..+|..++.+|...|++++|...|+++++..+....+|..++..
T Consensus 8 ~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAG--RYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHT--CHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 456666777777777 458888888888877665 47788888888888888888888888888888888888888888
Q ss_pred HHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 000176 1793 LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1871 (1924)
Q Consensus 1793 l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~a 1871 (1924)
+... ++++|...|++++...|.. ..+|..+|..+...|++++|...|++++...|.+..+|..++.++...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPIN--FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHh--HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence 8877 8888888888888887765 477888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHh
Q 000176 1872 RGLFERAIS 1880 (1924)
Q Consensus 1872 r~lferal~ 1880 (1924)
...|++++.
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888876
|
| >2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.9e-12 Score=129.24 Aligned_cols=80 Identities=30% Similarity=0.404 Sum_probs=72.9
Q ss_pred ccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCC--CeeEEeccc
Q 000176 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEK--RRISLGMKS 1529 (1924)
Q Consensus 1452 ~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~--~ri~lslK~ 1529 (1924)
...+++|++|.|+|++|.+||+||+|.+.+++||||+|++++.++.++.+.|++||.|+|+|+++|+++ +||.||+|+
T Consensus 17 ~~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~~~~~i~LSlk~ 96 (119)
T 2cqo_A 17 ENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKV 96 (119)
T ss_dssp CCSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEECSSCEEEEEESTT
T ss_pred hcccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEEeccccCceEEEEEee
Confidence 567899999999999999999999995434799999999999999999999999999999999999864 799999998
Q ss_pred cc
Q 000176 1530 SY 1531 (1924)
Q Consensus 1530 s~ 1531 (1924)
..
T Consensus 97 ~~ 98 (119)
T 2cqo_A 97 VN 98 (119)
T ss_dssp BC
T ss_pred cc
Confidence 64
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-10 Score=126.23 Aligned_cols=166 Identities=15% Similarity=0.037 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
..|..++..+...|++++|...|++++..++....+|..++..+... ++++|...|+++++..|.. ..+|..+|.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN--VKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999 9999999999999998876 58999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1908 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~ 1908 (1924)
+..|++++|...|++++...|.+..+|..++..+...|++++|..+|++++. ..|... ..|..+.......|+.+.|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~-~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALG--LRPNEG-KVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh--cCccch-HHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999 566666 6888888888999999999
Q ss_pred HHHHHHHHHHHH
Q 000176 1909 EYVKQKAMEYVE 1920 (1924)
Q Consensus 1909 ~~v~~rAle~v~ 1920 (1924)
...+++|++.-.
T Consensus 164 ~~~~~~~~~~~~ 175 (186)
T 3as5_A 164 LPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC
Confidence 999999998754
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.3e-10 Score=142.30 Aligned_cols=254 Identities=10% Similarity=-0.026 Sum_probs=196.8
Q ss_pred HHHHHHHHhCCCCHHHHHH------HHHHHHHcCCHHHHHHHHHHHHHhcCCc-chhhHHHHHHHHHHHHHHcCCCCHHH
Q 000176 1662 DEFERLVRSSPNSSFVWIK------YMAFMLSMADVEKARSIAERALQTINIR-EENEKLNIWVAYFNLENEYGNPPEEA 1734 (1924)
Q Consensus 1662 ~~ferll~~~P~s~~~W~~------y~~~~~~~~e~dkAr~v~eraL~~i~~~-ee~ekl~lWiayl~le~~~g~~~~e~ 1734 (1924)
..++++ ...|.+...++. .+.++...|++++|...|++|++..... ...+...+|..+..++...| +.+.
T Consensus 85 ~~~~~i-~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~--~~~~ 161 (383)
T 3ulq_A 85 DLLLEI-DKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMK--QTYF 161 (383)
T ss_dssp HHHHHH-HHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT--CHHH
T ss_pred hHHHHH-HhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC--CHHH
Confidence 444443 334444444444 7777889999999999999999753221 13334567888888888889 5599
Q ss_pred HHHHHHHHHhcCCC--------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhc-CHH
Q 000176 1735 VVKVFQRALQYCDP--------KKVHLALLGLYERTEQNKLADELLYKMIKKFKHS------CKVWLRRVQRLLKQ-QQE 1799 (1924)
Q Consensus 1735 a~~vferAl~~~~~--------~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~------~~vw~~~a~~l~~~-~~~ 1799 (1924)
|...|++|++..+. -..|..++.+|...|++++|.+.|++++..++.. ..+|..+|..+... +++
T Consensus 162 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~ 241 (383)
T 3ulq_A 162 SMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYE 241 (383)
T ss_dssp HHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHH
Confidence 99999999987432 1689999999999999999999999999876422 35899999999999 999
Q ss_pred HHHHHHHHHHHhCC---C-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCC---
Q 000176 1800 GVQAVVQRALLSLP---R-HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK-----RTDLWSIYLDQEIRLGD--- 1867 (1924)
Q Consensus 1800 ~A~~l~~ral~~~p---~-~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk-----~~dlw~~y~~le~k~gd--- 1867 (1924)
+|...|++|+...+ . .....++..+|.+++..|++++|...|++++...++ ....+..++.++...|+
T Consensus 242 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 321 (383)
T 3ulq_A 242 DAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEA 321 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHH
T ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH
Confidence 99999999999421 1 233689999999999999999999999999987532 22335567777888888
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 000176 1868 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1922 (1924)
Q Consensus 1868 ~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~~ 1922 (1924)
+++|..+|+++ ...+... .++.....+....|+.+.|...+++|++.-++.
T Consensus 322 ~~~al~~~~~~---~~~~~~~-~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i 372 (383)
T 3ulq_A 322 IQGFFDFLESK---MLYADLE-DFAIDVAKYYHERKNFQKASAYFLKVEQVRQLI 372 (383)
T ss_dssp HHHHHHHHHHT---TCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHC---cCHHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 77788888875 2444444 577778888899999999999999999987653
|
| >2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=8.8e-12 Score=123.60 Aligned_cols=78 Identities=33% Similarity=0.583 Sum_probs=70.9
Q ss_pred cccccCCCcEEEEEEEEeecceEEEEEecC--ceeEEeecccc-CcccccCcccccCCCcEEEEEEEEEecCCCeeEEec
Q 000176 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENT--NLVGLCHVSEL-SEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527 (1924)
Q Consensus 1451 ~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~--~v~gl~h~sel-s~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lsl 1527 (1924)
...++++|+++.|+|++|.+||+||+|.+. +++||||+|++ ++.++.++.+.|++||.|+|+|+++|+ +||+||+
T Consensus 6 ~~~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~--~~i~LSl 83 (103)
T 2eqs_A 6 SGEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG--TKTSLSM 83 (103)
T ss_dssp CCSSCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEET--TEEEEES
T ss_pred ccccCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEEC--CeeEEEE
Confidence 356789999999999999999999999752 79999999999 677788899999999999999999996 6999999
Q ss_pred ccc
Q 000176 1528 KSS 1530 (1924)
Q Consensus 1528 K~s 1530 (1924)
|..
T Consensus 84 k~~ 86 (103)
T 2eqs_A 84 KDV 86 (103)
T ss_dssp TTB
T ss_pred eec
Confidence 984
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-10 Score=136.68 Aligned_cols=179 Identities=9% Similarity=0.023 Sum_probs=121.9
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Q 000176 1669 RSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1748 (1924)
Q Consensus 1669 ~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~ 1748 (1924)
..+|++...|+..+..+++.|++++|...|+++++..|.... ....|..+...+...+ +.+.|...|+++++..|.
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~a~~~lg~~~~~~~--~~~~A~~~~~~~l~~~p~ 84 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEW--AADAQFYLARAYYQNK--EYLLAASEYERFIQIYQI 84 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTT--HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc--hHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHHCCC
Confidence 346889999999999999999999999999999988775421 1246667777777888 459999999999998764
Q ss_pred ----HHHHHHHHHHHHH--------hCChHHHHHHHHHHHHhcCCCHHHH-----------------HHHHHHHHhc-CH
Q 000176 1749 ----KKVHLALLGLYER--------TEQNKLADELLYKMIKKFKHSCKVW-----------------LRRVQRLLKQ-QQ 1798 (1924)
Q Consensus 1749 ----~~i~~~l~~i~~~--------~gk~e~A~~~fe~~lk~~~~~~~vw-----------------~~~a~~l~~~-~~ 1798 (1924)
...|+.++.+|.. .|++++|...|++++..+|.+..+| +.++.++... ++
T Consensus 85 ~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~ 164 (261)
T 3qky_A 85 DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELY 164 (261)
T ss_dssp CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH
Confidence 2788888888888 8899999999999999888776666 3344444444 44
Q ss_pred HHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCC
Q 000176 1799 EGVQAVVQRALLSLPRHK-HIKFISQTAILEFKN----------GVADRGRSMFEGILSEYPKR 1851 (1924)
Q Consensus 1799 ~~A~~l~~ral~~~p~~~-~~~~~~~~A~le~~~----------g~~e~Ar~lfe~aL~~~Pk~ 1851 (1924)
++|...|+++++..|... ...+|..+|..++.. |++++|...|++++..+|++
T Consensus 165 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 165 EAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 444444444444444432 123444444444433 44444444444444444444
|
| >1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-11 Score=118.41 Aligned_cols=78 Identities=18% Similarity=0.318 Sum_probs=71.9
Q ss_pred CcCccCCCCEEEEEEEEEecCeEEEEEC--CCeEEEecCC-ccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeec
Q 000176 755 DASHIHPNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRS-KAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831 (1924)
Q Consensus 755 ~~~~~~~G~~~~G~V~~i~~~G~fV~f~--~~l~Glv~~s-~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk 831 (1924)
.|...++|+++.|+|+ |++||+||++. +++.||+|.| ++++++..++++.| +||.|+|+|+++|++++|+.||+|
T Consensus 5 ~y~~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI~lslk 82 (88)
T 1luz_A 5 CYSLPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVNYK 82 (88)
T ss_dssp CSCCCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEETTTTEEEEEEE
T ss_pred EecCCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEEECCCCEEEEEEe
Confidence 3566788999999999 99999999996 4899999999 99998888888889 999999999999999999999999
Q ss_pred ccc
Q 000176 832 QSC 834 (1924)
Q Consensus 832 ~~~ 834 (1924)
...
T Consensus 83 ~~~ 85 (88)
T 1luz_A 83 RMC 85 (88)
T ss_dssp EEC
T ss_pred ecC
Confidence 764
|
| >2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.2e-11 Score=125.99 Aligned_cols=82 Identities=17% Similarity=0.410 Sum_probs=77.3
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeeccccc
Q 000176 1363 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1442 (1924)
Q Consensus 1363 ~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~ 1442 (1924)
.++++|+++.|+|++++++|+||+|+.+++|+||+++++|.|+.++.+.|++||.|.|+|+++|+++++|.||+|+...+
T Consensus 3 ~~~~vG~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk~~~~~ 82 (130)
T 2k4k_A 3 AKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIRATQAA 82 (130)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESHHHHHS
T ss_pred CcCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEEEeecccC
Confidence 35889999999999999999999999899999999999999999999999999999999999999999999999998776
Q ss_pred cc
Q 000176 1443 TA 1444 (1924)
Q Consensus 1443 ~~ 1444 (1924)
|+
T Consensus 83 p~ 84 (130)
T 2k4k_A 83 PE 84 (130)
T ss_dssp CC
T ss_pred cc
Confidence 53
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-10 Score=156.55 Aligned_cols=185 Identities=6% Similarity=-0.098 Sum_probs=163.0
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 000176 1670 SSPNSSFVWIKYMAFMLSMADVEKARSIAERAL--------QTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1741 (1924)
Q Consensus 1670 ~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL--------~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vfer 1741 (1924)
.+|++..+++..+ ...+++++|.+.+++++ +..|... ..|..+...+...| +.++|.+.|++
T Consensus 389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~-----~~~~~~a~~~~~~g--~~~~A~~~~~~ 458 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESV-----ELPLMEVRALLDLG--DVAKATRKLDD 458 (681)
T ss_dssp CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCS-----HHHHHHHHHHHHHT--CHHHHHHHHHH
T ss_pred CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccch-----hHHHHHHHHHHhcC--CHHHHHHHHHH
Confidence 4677776666544 77899999999999999 5555432 47888888888999 55999999999
Q ss_pred HHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHH
Q 000176 1742 ALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIK 1819 (1924)
Q Consensus 1742 Al~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~ 1819 (1924)
|++..|.. .+|+.++.+|...|++++|.+.|+++++..|.+..+|+.++..+.+. ++++ .+.|++|++..|.+ ..
T Consensus 459 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~--~~ 535 (681)
T 2pzi_A 459 LAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV--IS 535 (681)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC--HH
T ss_pred HhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch--HH
Confidence 99998875 99999999999999999999999999999999999999999999999 9999 99999999999987 58
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 000176 1820 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1867 (1924)
Q Consensus 1820 ~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd 1867 (1924)
+|..+|.++...|++++|...|+++++..|.+..+|..++..++..++
T Consensus 536 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 536 AAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999998877655
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.9e-10 Score=134.82 Aligned_cols=221 Identities=11% Similarity=0.004 Sum_probs=158.2
Q ss_pred CCCchHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCcchhhHHHHHHHHHH
Q 000176 1656 DAPRTPDEFERLVR--------SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI-----NIREENEKLNIWVAYFN 1722 (1924)
Q Consensus 1656 ~~p~a~~~ferll~--------~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i-----~~~ee~ekl~lWiayl~ 1722 (1924)
+.++|...|++++. .+|....+|..++.++...|++++|...+++++... +. .......|..+..
T Consensus 16 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~l~~ 93 (283)
T 3edt_B 16 PRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD--HPAVAATLNNLAV 93 (283)
T ss_dssp CSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT--CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc--chHHHHHHHHHHH
Confidence 35566666666654 236788999999999999999999999999999764 21 1223467777778
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHh--------cCCCHHH
Q 000176 1723 LENEYGNPPEEAVVKVFQRALQYC--------DP-KKVHLALLGLYERTEQNKLADELLYKMIKK--------FKHSCKV 1785 (1924)
Q Consensus 1723 le~~~g~~~~e~a~~vferAl~~~--------~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~--------~~~~~~v 1785 (1924)
+....+ +.++|.+.|++|+... +. ...|..++.+|...|++++|.+.|++++.. .+....+
T Consensus 94 ~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 94 LYGKRG--KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHTTT--CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHhc--cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 877888 5599999999999873 22 278888899999999999999999998887 3344667
Q ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHhCCC-------CChHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCC
Q 000176 1786 WLRRVQRLLKQ-QQEGVQAVVQRALLSLPR-------HKHIKFISQTAILEFKNGV------ADRGRSMFEGILSEYPKR 1851 (1924)
Q Consensus 1786 w~~~a~~l~~~-~~~~A~~l~~ral~~~p~-------~~~~~~~~~~A~le~~~g~------~e~Ar~lfe~aL~~~Pk~ 1851 (1924)
|..++..+... ++++|..+|++++...+. .....+|...+.++...+. +..+...++.+....|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 88888888888 888999888888876321 1112567777766664443 344444444444444555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1852 TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1852 ~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
..+|..++.++...|++++|..+|++++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66788888888888888888888888886
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-10 Score=155.77 Aligned_cols=167 Identities=8% Similarity=-0.070 Sum_probs=151.9
Q ss_pred HHcCCCCHHHHHHHHHHHH--------hcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 000176 1725 NEYGNPPEEAVVKVFQRAL--------QYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK 1795 (1924)
Q Consensus 1725 ~~~g~~~~e~a~~vferAl--------~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~ 1795 (1924)
...+ +.++|.+.|++|+ +..|.. ..|+.++.+|.+.|++++|.+.|+++++..|++..+|+.++..+..
T Consensus 402 ~~~~--~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLS--QPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTC--CHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred cccc--CHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 5566 5699999999999 766664 9999999999999999999999999999999999999999999999
Q ss_pred c-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 000176 1796 Q-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGL 1874 (1924)
Q Consensus 1796 ~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~l 1874 (1924)
. ++++|...|++|++..|.+. .+|..+|.++++.|++++ ...|+++++.+|++..+|..++.++.+.|+++.|...
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~--~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGEL--APKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCS--HHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9 99999999999999999884 899999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHH
Q 000176 1875 FERAISLSLPPKKMKFLFKKYLEYE 1899 (1924)
Q Consensus 1875 feral~~~~~pk~~k~lw~~yl~~E 1899 (1924)
|++|+. +.|... ..|.......
T Consensus 557 ~~~al~--l~P~~~-~a~~~~~~~~ 578 (681)
T 2pzi_A 557 LDEVPP--TSRHFT-TARLTSAVTL 578 (681)
T ss_dssp HHTSCT--TSTTHH-HHHHHHHHHT
T ss_pred HHhhcc--cCcccH-HHHHHHHHHH
Confidence 999998 778776 4555444443
|
| >3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-12 Score=150.85 Aligned_cols=108 Identities=16% Similarity=0.266 Sum_probs=98.4
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeC--CCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeeccccc
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLS--RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1442 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~--~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~ 1442 (1924)
.++|+++.|+|+++.++|+||+|+ ++++|+||+|+++|.++.++.+.|++||.|.++|+++|+++++|.||+|....+
T Consensus 9 p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk~~~~~ 88 (275)
T 3aev_A 9 PEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRVTQQ 88 (275)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESTTCCHH
T ss_pred CCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEEEEeecCcc
Confidence 358999999999999999999998 689999999999999999999999999999999999999999999999998877
Q ss_pred ccchhccccccccCCCcEEEEEEEEee-cceEEEE
Q 000176 1443 TASQSEINNLSNLHVGDIVIGQIKRVE-SYGLFIT 1476 (1924)
Q Consensus 1443 ~~~~~~~~~~~~l~~G~~v~G~V~~v~-~~GvFV~ 1476 (1924)
||.. ....++.|+.+.|.|+++. +||++++
T Consensus 89 ~~~~----~~~~~~~g~~v~g~v~~v~~~~G~~~e 119 (275)
T 3aev_A 89 QRKA----KLQEFKRAQKAENLLRLAAEKLGKDFE 119 (275)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHHHHHHTCCHH
T ss_pred hhHH----HHHhccCCCeEEEEEEEchhhcCCCHH
Confidence 6643 3567899999999999998 8999653
|
| >2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.9e-11 Score=112.03 Aligned_cols=73 Identities=18% Similarity=0.311 Sum_probs=68.0
Q ss_pred ccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeecccc
Q 000176 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834 (1924)
Q Consensus 758 ~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~ 834 (1924)
++++|+++.|.|++++++|+||++.+++.||+|.|++++.+. +.|++||.|+|+|+++|++++|+.||+++..
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~~~~----~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~~~ 74 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLRL----ENLNVGDEIIVQAIDVRPEKREIDFKYIPLE 74 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSSCCG----GGCCTTCEEEEEEEEEETTTTEEEEEECSCC
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCcccc----eeeCCCCEEEEEEEEEECCCCEEEEEEeecc
Confidence 467899999999999999999999999999999999997664 6799999999999999999999999999874
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.8e-11 Score=142.43 Aligned_cols=223 Identities=12% Similarity=0.019 Sum_probs=170.5
Q ss_pred cCCCCchHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCcchhhHHHHHHHH
Q 000176 1654 EKDAPRTPDEFERLVR--------SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI-----NIREENEKLNIWVAY 1720 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~--------~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i-----~~~ee~ekl~lWiay 1720 (1924)
.++..++...|++++. .+|....+|..++..+...|++++|...+++++... +. .......|..+
T Consensus 40 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~l 117 (311)
T 3nf1_A 40 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD--HPAVAATLNNL 117 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC--ChHHHHHHHHH
Confidence 4557788899999987 467788999999999999999999999999999764 21 12234677788
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcC------CC---HHHHHHHHHHHHHhCChHHHHHHHHHHHHh--------cCCCH
Q 000176 1721 FNLENEYGNPPEEAVVKVFQRALQYC------DP---KKVHLALLGLYERTEQNKLADELLYKMIKK--------FKHSC 1783 (1924)
Q Consensus 1721 l~le~~~g~~~~e~a~~vferAl~~~------~~---~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~--------~~~~~ 1783 (1924)
..++...+ +.++|...|+++++.. +. ..+|..++.+|...|++++|.+.|++++.. .+...
T Consensus 118 ~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 195 (311)
T 3nf1_A 118 AVLYGKRG--KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVA 195 (311)
T ss_dssp HHHHHTTT--CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHH
T ss_pred HHHHHHcC--cHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 88888888 5599999999999874 22 278999999999999999999999999987 34456
Q ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC---------CC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 000176 1784 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR---------HK----HIKFISQTAILEFKNGVADRGRSMFEGILSEYP 1849 (1924)
Q Consensus 1784 ~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~---------~~----~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~P 1849 (1924)
.+|..++..+... ++++|...|++++...+. .. +...+...+..+...+.+.+|...|+.++...|
T Consensus 196 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 275 (311)
T 3nf1_A 196 KTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSP 275 (311)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCc
Confidence 7899999999999 999999999999986432 11 122333334444456677788889999998899
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1850 KRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1850 k~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
....+|..++.++.+.|++++|..+|++++.
T Consensus 276 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 276 TVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999999999999999997
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.19 E-value=3e-09 Score=127.14 Aligned_cols=228 Identities=9% Similarity=0.017 Sum_probs=197.8
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHH----HHc---
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA--DVEKARSIAERALQTINIREENEKLNIWVAYFNLE----NEY--- 1727 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~--e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le----~~~--- 1727 (1924)
.+++...++++|..+|++..+|..-.......+ .++++.+.++.+|...|... .+|.....+. ...
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y-----~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY-----QIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC-----HHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH-----HHHHHHHHHHHHHHHhcccc
Confidence 678999999999999999999999999999988 99999999999998777533 4787766665 444
Q ss_pred CCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-C------
Q 000176 1728 GNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNK--LADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q------ 1797 (1924)
Q Consensus 1728 g~~~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e--~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~------ 1797 (1924)
+ +.+++.+.++++++.+|. ..+|.....++.+.+.++ ++.+.+++++...+.+..+|...+..+... .
T Consensus 124 ~--~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 F--DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp C--CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred C--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhh
Confidence 5 348899999999999986 499999999999999998 999999999999999999999888777766 5
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHH
Q 000176 1798 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV-ADRGRSMFEGILSEY---PKRTDLWSIYLDQEIRLGDVDLIRG 1873 (1924)
Q Consensus 1798 ~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~-~e~Ar~lfe~aL~~~---Pk~~dlw~~y~~le~k~gd~~~ar~ 1873 (1924)
++++.+.+.++|...|.+. .+|...+.++.+.|. .+.....+++++... |++..+|..+++.+.+.|+.++|..
T Consensus 202 ~~eEl~~~~~aI~~~p~n~--SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQNP--STWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHCSSCH--HHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCc--cHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 9999999999999999884 899999999988886 455667888877655 8899999999999999999999999
Q ss_pred HHHHHHhcCCCchhHHHHHHHH
Q 000176 1874 LFERAISLSLPPKKMKFLFKKY 1895 (1924)
Q Consensus 1874 lferal~~~~~pk~~k~lw~~y 1895 (1924)
+|+++.. ++.|-+. .+|.--
T Consensus 280 ~~~~l~~-~~Dpir~-~yW~~~ 299 (306)
T 3dra_A 280 VYDLLKS-KYNPIRS-NFWDYQ 299 (306)
T ss_dssp HHHHHHH-TTCGGGH-HHHHHH
T ss_pred HHHHHHh-ccChHHH-HHHHHH
Confidence 9999886 5677777 477643
|
| >1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=2.5e-12 Score=150.62 Aligned_cols=107 Identities=19% Similarity=0.258 Sum_probs=95.8
Q ss_pred cCCCCEEEEEEEEEecCeEEEEEC--CCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeecccccC
Q 000176 759 IHPNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836 (1924)
Q Consensus 759 ~~~G~~~~G~V~~i~~~G~fV~f~--~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~~~ 836 (1924)
.++|+++.|+|++|+++|+||++. +++.||+|.|++++.++.++.+.|++||.|.|+|+++|++++|+.||+|....
T Consensus 11 ~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~~~~- 89 (308)
T 1q8k_A 11 PEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSKRRVSP- 89 (308)
T ss_dssp CSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEECSSCCH-
T ss_pred CCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEEeccc-
Confidence 458999999999999999999997 79999999999999999999999999999999999999999999999998743
Q ss_pred CCchhhHHHHHHHHHHHHHhhcccCCCccccccccccCccEEEEEEEEEec-ceeEE
Q 000176 837 STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND-FGVVV 892 (1924)
Q Consensus 837 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~v~g~V~~i~~-~g~~v 892 (1924)
.+|..+...+++|+.++|+|..+.+ +|+++
T Consensus 90 --------------------------~p~~~~~~~~~~G~~v~G~V~~v~~~~G~fi 120 (308)
T 1q8k_A 90 --------------------------EEAIKCEDKFTKSKTVYSILRHVAEVLEYTK 120 (308)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred --------------------------ChHHHHHHHccCCCeeEEEEEEcccccCCcc
Confidence 1244456778899999999999998 59863
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=4.6e-11 Score=127.92 Aligned_cols=133 Identities=15% Similarity=0.093 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHH
Q 000176 1732 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1809 (1924)
Q Consensus 1732 ~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral 1809 (1924)
.++|.+.|++|+...|.. ..|+.++.+|.+.|++++|.+.|+++++..|.++.+|..++..+... ++++|...|++++
T Consensus 13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al 92 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSV 92 (150)
T ss_dssp HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 355555555555544433 44555555666666666666666666655555566666666655555 5666666666666
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000176 1810 LSLPRHKHIKFISQTAILEFKNGVADR-GRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1866 (1924)
Q Consensus 1810 ~~~p~~~~~~~~~~~A~le~~~g~~e~-Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~g 1866 (1924)
+..|.+ ..+|..+|.++++.|++++ ++..++++++.+|++..+|.....++...|
T Consensus 93 ~~~p~~--~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 93 ELNPTQ--KDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHCTTC--HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 555554 3555555655555555543 333345566656665555555555554444
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.16 E-value=5.8e-09 Score=128.84 Aligned_cols=267 Identities=10% Similarity=0.005 Sum_probs=199.7
Q ss_pred hcCCCCchHHHHHHHHHhCCCC-HH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchh-hHHHHHHHHHHHHHH
Q 000176 1653 LEKDAPRTPDEFERLVRSSPNS-SF----VWIKYMAFMLSMADVEKARSIAERALQTINIREEN-EKLNIWVAYFNLENE 1726 (1924)
Q Consensus 1653 ~~~~~p~a~~~ferll~~~P~s-~~----~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~-ekl~lWiayl~le~~ 1726 (1924)
..++.+++...|++++...|.+ .. ++..++..+...|++++|+..+++++...+...+. .....+..+..++..
T Consensus 26 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 105 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 105 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 3566888999999999877754 32 45566777888999999999999999754422111 112234455666777
Q ss_pred cCCCCHHHHHHHHHHHHhcCC-------C--HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC-----CHHHHHHHHHH
Q 000176 1727 YGNPPEEAVVKVFQRALQYCD-------P--KKVHLALLGLYERTEQNKLADELLYKMIKKFKH-----SCKVWLRRVQR 1792 (1924)
Q Consensus 1727 ~g~~~~e~a~~vferAl~~~~-------~--~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~-----~~~vw~~~a~~ 1792 (1924)
.| +.+.|...|+++++..+ + ...|..++.+|...|++++|...|++++...+. ....|..++..
T Consensus 106 ~G--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 106 QG--FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp TT--CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred CC--CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 89 56999999999998652 2 267788999999999999999999999987653 34678888998
Q ss_pred HHhc-CHHHHHHHHHHHHHhCCCCChHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH
Q 000176 1793 LLKQ-QQEGVQAVVQRALLSLPRHKHIKFIS-----QTAILEFKNGVADRGRSMFEGILSEYPKR----TDLWSIYLDQE 1862 (1924)
Q Consensus 1793 l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~-----~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~----~dlw~~y~~le 1862 (1924)
+... ++++|...|++++...+.......|. ..+.++...|++++|+.++++++...|.. ...|..++.++
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 263 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence 8888 99999999999998754422111222 23455778999999999999998876643 33677889999
Q ss_pred HHcCCHHHHHHHHHHHHhcC--CC-chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000176 1863 IRLGDVDLIRGLFERAISLS--LP-PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921 (1924)
Q Consensus 1863 ~k~gd~~~ar~lferal~~~--~~-pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~ 1921 (1924)
...|++++|..+|++++... .. +...-..+..........|+.+.+...+++|++..+.
T Consensus 264 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 264 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999998721 11 1112134555566677789999999999999987653
|
| >2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.1e-11 Score=122.63 Aligned_cols=85 Identities=22% Similarity=0.265 Sum_probs=76.6
Q ss_pred hccCCCCCEEEEEEEEEeeceEEEEeCC-CcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCC--CEEEEEeec
Q 000176 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSR-KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS--KRVEVTLKT 1438 (1924)
Q Consensus 1362 ~~~lk~G~~v~G~V~~v~~~G~fV~l~~-~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~--~ri~LSlk~ 1438 (1924)
...+++|+++.|+|++|+++|+||+|+. +.+|+||+++++|.++.++.+.|++||.|.++|+++|+++ ++|.||+|.
T Consensus 17 ~~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~~~~~i~LSlk~ 96 (119)
T 2cqo_A 17 ENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKV 96 (119)
T ss_dssp CCSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEECSSCEEEEEESTT
T ss_pred hcccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEEeccccCceEEEEEee
Confidence 3568899999999999999999999965 4799999999999999999999999999999999999864 799999999
Q ss_pred ccccccch
Q 000176 1439 SDSRTASQ 1446 (1924)
Q Consensus 1439 ~~~~~~~~ 1446 (1924)
...+||.+
T Consensus 97 ~~~~~~~~ 104 (119)
T 2cqo_A 97 VNQGTGKD 104 (119)
T ss_dssp BCSSSCCB
T ss_pred cccCCccc
Confidence 88776554
|
| >2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=7.9e-11 Score=116.74 Aligned_cols=82 Identities=26% Similarity=0.411 Sum_probs=74.4
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEeCC---CcEEEEECccC-CCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeec
Q 000176 1363 EDLSPNMIVQGYVKNVTSKGCFIMLSR---KLDAKVLLSNL-SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438 (1924)
Q Consensus 1363 ~~lk~G~~v~G~V~~v~~~G~fV~l~~---~v~g~v~~sel-sd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~ 1438 (1924)
.++++|+++.|+|+++.++|+||+|+. +++|+||++++ +|.++.++.+.|++||.|.++|+++|+ ++|.||+|.
T Consensus 8 ~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~--~~i~LSlk~ 85 (103)
T 2eqs_A 8 EEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG--TKTSLSMKD 85 (103)
T ss_dssp SSCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEET--TEEEEESTT
T ss_pred ccCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEEC--CeeEEEEee
Confidence 467899999999999999999999996 89999999999 677888898999999999999999996 699999999
Q ss_pred ccccccch
Q 000176 1439 SDSRTASQ 1446 (1924)
Q Consensus 1439 ~~~~~~~~ 1446 (1924)
...+|+.+
T Consensus 86 ~~~~~~~~ 93 (103)
T 2eqs_A 86 VDQETGED 93 (103)
T ss_dssp BCTTTCCB
T ss_pred cccCCchh
Confidence 88776543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.15 E-value=3e-09 Score=132.04 Aligned_cols=239 Identities=11% Similarity=0.023 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-cchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC------
Q 000176 1676 FVWIKYMAFMLSMADVEKARSIAERALQTINI-REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP------ 1748 (1924)
Q Consensus 1676 ~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~-~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~------ 1748 (1924)
..|...+.++...|++++|...|++|++.... ..+.+...+|..+..+....+ +.+.|...|++|+...+.
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~--~~~~A~~~~~~al~~~~~~~~~~~ 179 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK--QTHVSMYHILQALDIYQNHPLYSI 179 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHhCCCchh
Confidence 35667778888999999999999999975432 123344567777778888889 559999999999986431
Q ss_pred --HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcC---C---CHHHHHHHHHHHHhc-CHHHHHHHHHHHHH-----hCCC
Q 000176 1749 --KKVHLALLGLYERTEQNKLADELLYKMIKKFK---H---SCKVWLRRVQRLLKQ-QQEGVQAVVQRALL-----SLPR 1814 (1924)
Q Consensus 1749 --~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~---~---~~~vw~~~a~~l~~~-~~~~A~~l~~ral~-----~~p~ 1814 (1924)
-..|..++.+|...|++++|.+.|++++..++ + ...+|..+|..+... ++++|...|++|+. ..|.
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 259 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence 16788999999999999999999999998653 1 245788999999999 99999999999999 4444
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCch
Q 000176 1815 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK-----RTDLWSIYLDQEIRLGD---VDLIRGLFERAISLSLPPK 1886 (1924)
Q Consensus 1815 ~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk-----~~dlw~~y~~le~k~gd---~~~ar~lferal~~~~~pk 1886 (1924)
. ..++..+|.+++..|++++|...|++++...+. ....+..+..++...++ +.+|...|++. ...+.
T Consensus 260 ~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~ 334 (378)
T 3q15_A 260 L--PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAY 334 (378)
T ss_dssp H--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHH
T ss_pred H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhH
Confidence 3 689999999999999999999999999998654 23345555566667777 77788888772 23444
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 000176 1887 KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1922 (1924)
Q Consensus 1887 ~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~~ 1922 (1924)
.. .++.....+....|+.+.|...|++|++.-++.
T Consensus 335 ~~-~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~ 369 (378)
T 3q15_A 335 IE-ACARSAAAVFESSCHFEQAAAFYRKVLKAQEDI 369 (378)
T ss_dssp HH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 44 577788888899999999999999999887654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.13 E-value=5.7e-10 Score=126.37 Aligned_cols=184 Identities=9% Similarity=-0.005 Sum_probs=122.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHH
Q 000176 1674 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHL 1753 (1924)
Q Consensus 1674 s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~ 1753 (1924)
+...|+..+..+++.|++++|...|+++++..|... ..|.. . ..... .+.+ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~---~--~~~~~-~~~~-------------~~~~~ 58 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT-----EMYYW---T--NVDKN-SEIS-------------SKLAT 58 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH-----HHHHH---H--HSCTT-SHHH-------------HHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh-----HHHHH---h--hhcch-hhhh-------------HHHHH
Confidence 567788888899999999999999999998766321 23322 1 11110 0100 13455
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC
Q 000176 1754 ALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1832 (1924)
Q Consensus 1754 ~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g 1832 (1924)
.++.+|.+.|++++|...|+++++..|.+..+|+.++..+... ++++|...|+++++..|.+ ..+|..+|.+++..|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN--LAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHh
Confidence 6777777788888888888888877777788888888877777 8888888888888877766 477777777776555
Q ss_pred C--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 000176 1833 V--ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1886 (1924)
Q Consensus 1833 ~--~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk 1886 (1924)
. .+.+...|++++...|. ...|...+..+...|+++.|...|++++. +.|.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~ 189 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPS 189 (208)
T ss_dssp HHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCC
T ss_pred HHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCC
Confidence 3 34555666665432221 22455556666667778888888888777 4443
|
| >1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5 | Back alignment and structure |
|---|
Probab=99.12 E-value=6.1e-11 Score=121.11 Aligned_cols=96 Identities=14% Similarity=0.157 Sum_probs=76.3
Q ss_pred EEeecccccccchhccccccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccC-cccccCcccccCCCcEEEEE
Q 000176 1434 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVK 1512 (1924)
Q Consensus 1434 LSlk~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels-~~~~~~~~~~~~~Gd~Vk~~ 1512 (1924)
+||+++..+. ...+.++++|+++.|+|++|++||+||+|+..++.|++|.++.. +.+..++.+.|++||.|+|+
T Consensus 3 ~sl~P~~vn~-----~~~~~~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vk 77 (119)
T 1wi5_A 3 SGSSGKNVNR-----VLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCI 77 (119)
T ss_dssp CCCCCSCSSC-----CCCTTTCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEE
T ss_pred cccCHHHhhc-----cccHhcCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecccccccccCccCEeCCCCEEEEE
Confidence 5677766642 22478999999999999999999999999733566666655542 33445678899999999999
Q ss_pred EEEEecCCCeeEEeccccccCC
Q 000176 1513 ILKVDKEKRRISLGMKSSYFKN 1534 (1924)
Q Consensus 1513 Vl~id~e~~ri~lslK~s~~~~ 1534 (1924)
|+++|.+++||.||+|+.++..
T Consensus 78 V~~vd~~~~~i~Lslk~~~l~~ 99 (119)
T 1wi5_A 78 VEKVKGNGGVVSLSVGHSEVST 99 (119)
T ss_dssp EEECCTTSCEEEEECCCCCSCC
T ss_pred EEEEeCCCCEEEEEEchhhccc
Confidence 9999999999999999976644
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.7e-09 Score=124.94 Aligned_cols=169 Identities=15% Similarity=0.166 Sum_probs=146.7
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC---HHHHH
Q 000176 1715 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP----KKVHLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVWL 1787 (1924)
Q Consensus 1715 ~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~----~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~---~~vw~ 1787 (1924)
..|..........| +.++|...|+++++..|. ..+|+.++.+|.+.|++++|...|+++++.+|.+ ..+|+
T Consensus 16 ~~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 16 QEAFERAMEFYNQG--KYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHhC--CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 45666667777888 459999999999999875 4899999999999999999999999999998743 67899
Q ss_pred HHHHHHHh--------c-CHHHHHHHHHHHHHhCCCCChH-HHH--------------HHHHHHHHHcCCHHHHHHHHHH
Q 000176 1788 RRVQRLLK--------Q-QQEGVQAVVQRALLSLPRHKHI-KFI--------------SQTAILEFKNGVADRGRSMFEG 1843 (1924)
Q Consensus 1788 ~~a~~l~~--------~-~~~~A~~l~~ral~~~p~~~~~-~~~--------------~~~A~le~~~g~~e~Ar~lfe~ 1843 (1924)
.++..++. . ++++|...|++++...|.+... .++ ..+|.+++..|++++|...|++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999 8 9999999999999999987532 232 7889999999999999999999
Q ss_pred HHHhCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCchh
Q 000176 1844 ILSEYPK---RTDLWSIYLDQEIRL----------GDVDLIRGLFERAISLSLPPKK 1887 (1924)
Q Consensus 1844 aL~~~Pk---~~dlw~~y~~le~k~----------gd~~~ar~lferal~~~~~pk~ 1887 (1924)
++..+|+ ..++|..++..+... |++++|...|++++. ..|+.
T Consensus 174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~ 228 (261)
T 3qky_A 174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ--IFPDS 228 (261)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH--HCCCC
Confidence 9999998 456899899988876 889999999999998 45544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=3.3e-10 Score=121.28 Aligned_cols=145 Identities=12% Similarity=-0.010 Sum_probs=129.0
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC
Q 000176 1755 LLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1833 (1924)
Q Consensus 1755 l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~ 1833 (1924)
|+.++...+++++|.+.|++++...|..+..|+.+|..+++. ++++|...|+++++..|.+ ..+|..+|.+++..|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD--PKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCc
Confidence 566777788999999999999988888889999999999999 9999999999999999987 6999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCC
Q 000176 1834 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL-IRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGE 1904 (1924)
Q Consensus 1834 ~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~-ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~ 1904 (1924)
+++|...|+++++..|++.++|..++.++.+.|+++. ++..+++|+. +.|+.. .+|.....+....|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~-~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSP-AVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCH-HHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCH-HHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999865 5556799999 888888 688888888777775
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.2e-08 Score=128.96 Aligned_cols=240 Identities=7% Similarity=-0.097 Sum_probs=189.6
Q ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHH----
Q 000176 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLS----MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE---- 1726 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~----~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~---- 1726 (1924)
.+.+++...|++++.. ++...|..++.++.. .+++++|...|+++++.-+ ...+..+..+...
T Consensus 165 ~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-------~~a~~~lg~~y~~g~g~ 235 (490)
T 2xm6_A 165 RDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGD-------ELGQLHLADMYYFGIGV 235 (490)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHTSSS
T ss_pred CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHcCCCC
Confidence 3466788888888764 678899999998887 7899999999999986432 1234444444443
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----hCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc------
Q 000176 1727 YGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER----TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ------ 1796 (1924)
Q Consensus 1727 ~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~----~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~------ 1796 (1924)
.+ +.++|...|++|+.. .....+..++.+|.. .+++++|...|+++... .++..++.++.++...
T Consensus 236 ~~--~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~ 310 (490)
T 2xm6_A 236 TQ--DYTQSRVLFSQSAEQ-GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAK 310 (490)
T ss_dssp CC--CHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCC
T ss_pred CC--CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcC
Confidence 34 568899999999876 345788888889988 88999999999999865 5788888888888763
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHH
Q 000176 1797 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG---VADRGRSMFEGILSEYPKRTDLWSIYLDQEIR----LGDVD 1869 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g---~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k----~gd~~ 1869 (1924)
++++|...|+++++.. +..++..+|.+++..| ++++|..+|++++.. .+.+.|..++.++.. .++++
T Consensus 311 ~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~ 384 (490)
T 2xm6_A 311 NREQAISWYTKSAEQG----DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQ 384 (490)
T ss_dssp CHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHH
Confidence 8999999999998763 3578999999998867 789999999999876 568899999999998 89999
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Q 000176 1870 LIRGLFERAISLSLPPKKMKFLFKKYLEYEKS----VGEEERIEYVKQKAMEYV 1919 (1924)
Q Consensus 1870 ~ar~lferal~~~~~pk~~k~lw~~yl~~E~~----~G~~~~~~~v~~rAle~v 1919 (1924)
+|..+|++++... . . ..|.....+... .+|.+.|...|++|++.-
T Consensus 385 ~A~~~~~~A~~~~-~---~-~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 385 QAAIWMRKAAEQG-L---S-AAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHTT-C---H-HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-C---H-HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 9999999999832 2 2 345555555555 689999999999998764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-09 Score=130.20 Aligned_cols=180 Identities=12% Similarity=0.042 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHH
Q 000176 1732 EEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1809 (1924)
Q Consensus 1732 ~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral 1809 (1924)
.+.....+.+.+ |. ...++.++..+.+.|++++|.+.|++++...|++..+|+.++..+++. ++++|..+|++++
T Consensus 102 ~~~l~~~l~~~l---p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 102 EEAIRALLDXVL---PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIP 178 (287)
T ss_dssp HHHHHHHHHHHS---CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHc---CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 344444454443 44 378889999999999999999999999999999999999999999999 9999999999999
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh--
Q 000176 1810 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK-- 1887 (1924)
Q Consensus 1810 ~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~-- 1887 (1924)
...|.. ...+...+..+...++.+.|...|++++...|++.++|..++.++...|+++.|...|++++. ..|..
T Consensus 179 ~~~p~~--~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~--~~p~~~~ 254 (287)
T 3qou_A 179 LQDQDT--RYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLR--XDLTAAD 254 (287)
T ss_dssp GGGCSH--HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTGGG
T ss_pred hhhcch--HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh--ccccccc
Confidence 888843 344555555566778888899999999999999999999999999999999999999999998 44443
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000176 1888 MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919 (1924)
Q Consensus 1888 ~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v 1919 (1924)
. ..|..++.+....|+.+.+...|+|++..+
T Consensus 255 ~-~a~~~l~~~~~~~g~~~~a~~~~r~al~~~ 285 (287)
T 3qou_A 255 G-QTRXTFQEILAALGTGDALASXYRRQLYAL 285 (287)
T ss_dssp G-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred c-hHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Confidence 4 578888888888999999999999988653
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.4e-09 Score=130.17 Aligned_cols=203 Identities=12% Similarity=0.061 Sum_probs=155.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCcc-hhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-------HHHHH
Q 000176 1682 MAFMLSMADVEKARSIAERALQTINIRE-ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-------KKVHL 1753 (1924)
Q Consensus 1682 ~~~~~~~~e~dkAr~v~eraL~~i~~~e-e~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~-------~~i~~ 1753 (1924)
+..+...|++++|...|++|+...+... .......|.....++...| +.++|...|++|++..+. -..|.
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g--~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~ 121 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG--NSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5567788999999999999997532111 1122457788888888889 559999999999987642 26899
Q ss_pred HHHHHHHHh-CChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChH-----HH
Q 000176 1754 ALLGLYERT-EQNKLADELLYKMIKKFKHS------CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI-----KF 1820 (1924)
Q Consensus 1754 ~l~~i~~~~-gk~e~A~~~fe~~lk~~~~~------~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~-----~~ 1820 (1924)
.++.+|... |++++|.+.|++++..++.. ..+|..++.++... ++++|...|++++...|..... .+
T Consensus 122 ~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 201 (292)
T 1qqe_A 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (292)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 999999996 99999999999999987533 56799999999999 9999999999999998876432 37
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-----HHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1821 ISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL-----WSIYLDQEI--RLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1821 ~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dl-----w~~y~~le~--k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
|...|.++...|+++.|+..|++++...|...+. +..++..+. ..++++.|...|++++. +.|...
T Consensus 202 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~--l~~~~~ 274 (292)
T 1qqe_A 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR--LDKWKI 274 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC--CCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc--cHHHHH
Confidence 8889999999999999999999999998876553 233333332 34668889999988877 776554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.6e-09 Score=129.66 Aligned_cols=203 Identities=10% Similarity=0.009 Sum_probs=157.7
Q ss_pred CHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC----C---HHHHHHHHHHHHHh
Q 000176 1690 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD----P---KKVHLALLGLYERT 1762 (1924)
Q Consensus 1690 e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~----~---~~i~~~l~~i~~~~ 1762 (1924)
++++|...|++|. ++....|.+ ++|.+.|++|+...+ . -..|..++.+|...
T Consensus 32 ~~~~A~~~~~~a~-------------------~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~ 90 (292)
T 1qqe_A 32 KFEEAADLCVQAA-------------------TIYRLRKEL--NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSG 90 (292)
T ss_dssp HHHHHHHHHHHHH-------------------HHHHHTTCT--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHH-------------------HHHHHcCCH--HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHC
Confidence 4889999999885 233567855 999999999998742 2 27899999999999
Q ss_pred CChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHh-c-CHHHHHHHHHHHHHhCCCCCh----HHHHHHHHHHHHH
Q 000176 1763 EQNKLADELLYKMIKKFKHS------CKVWLRRVQRLLK-Q-QQEGVQAVVQRALLSLPRHKH----IKFISQTAILEFK 1830 (1924)
Q Consensus 1763 gk~e~A~~~fe~~lk~~~~~------~~vw~~~a~~l~~-~-~~~~A~~l~~ral~~~p~~~~----~~~~~~~A~le~~ 1830 (1924)
|++++|...|++++..++.. ..+|..++..+.. . ++++|...|++|+...|...+ ..++..+|.++..
T Consensus 91 g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~ 170 (292)
T 1qqe_A 91 GNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL 170 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999987532 5689999999998 5 999999999999998875422 3678999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHH----HHHHHHHHH
Q 000176 1831 NGVADRGRSMFEGILSEYPKRTD-------LWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKF----LFKKYLEYE 1899 (1924)
Q Consensus 1831 ~g~~e~Ar~lfe~aL~~~Pk~~d-------lw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~----lw~~yl~~E 1899 (1924)
.|++++|...|++++...|.... .|..++..+...|+++.|+..|++++. +.|..... ++...+...
T Consensus 171 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~ 248 (292)
T 1qqe_A 171 DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAV 248 (292)
T ss_dssp TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHH
Confidence 99999999999999999887543 577888889999999999999999998 55543311 222222222
Q ss_pred H--HcCCHHHHHHHHHHH
Q 000176 1900 K--SVGEEERIEYVKQKA 1915 (1924)
Q Consensus 1900 ~--~~G~~~~~~~v~~rA 1915 (1924)
. ..++++.+...|+++
T Consensus 249 ~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 249 NEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HTTCTTTHHHHHHHHTTS
T ss_pred HcCCHHHHHHHHHHhccC
Confidence 2 235577766666554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.5e-08 Score=125.10 Aligned_cols=241 Identities=12% Similarity=0.006 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC---H---
Q 000176 1676 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP---K--- 1749 (1924)
Q Consensus 1676 ~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~---~--- 1749 (1924)
.++...+..+...|++++|+..+++++...+..........+..+..++...| +.+.|...|++|+...+. .
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG--ELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 34455666778899999999999999987764332223344555666677788 569999999999986532 1
Q ss_pred -HHHHHHHHHHHHhCChHHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC---
Q 000176 1750 -KVHLALLGLYERTEQNKLADELLYKMIKKFK--------HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK--- 1816 (1924)
Q Consensus 1750 -~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~--------~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~--- 1816 (1924)
..+..++.+|...|++++|.+.|++++..++ ....+|..++..+... ++++|...|++++...+...
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 4467888999999999999999999998762 2345677888888888 99999999999999887532
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH-----HHHHHHHcCCHHHHHHHHHHHHhcCCCchh--
Q 000176 1817 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPK--RTDLWSI-----YLDQEIRLGDVDLIRGLFERAISLSLPPKK-- 1887 (1924)
Q Consensus 1817 ~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk--~~dlw~~-----y~~le~k~gd~~~ar~lferal~~~~~pk~-- 1887 (1924)
...++..+|.++...|++++|+..|++++...+. ....|.. .+.++...|+++.|+.++++++. ..+..
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~~~~~~ 250 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK--PEFANNH 250 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC--CCCTTCG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC--CCCCcch
Confidence 2467888999999999999999999999876433 2123432 33446789999999999999887 32221
Q ss_pred -HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000176 1888 -MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1888 -~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~ 1920 (1924)
....|..+.......|+.+.+...+++|++...
T Consensus 251 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 284 (373)
T 1hz4_A 251 FLQGQWRNIARAQILLGEFEPAEIVLEELNENAR 284 (373)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 112456667778888999999999999987654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.10 E-value=5.3e-10 Score=139.03 Aligned_cols=224 Identities=9% Similarity=-0.003 Sum_probs=181.8
Q ss_pred cCCCCchHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcch--hhHHHHHHHHHHHHH
Q 000176 1654 EKDAPRTPDEFERLVRS---SPN---SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREE--NEKLNIWVAYFNLEN 1725 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~---~P~---s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee--~ekl~lWiayl~le~ 1725 (1924)
.++..+|...|++++.. .|+ ....|..++.++...|++++|...+++|++..+...+ ......|..+.....
T Consensus 116 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~ 195 (383)
T 3ulq_A 116 QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL 195 (383)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence 46688999999999865 233 5688999999999999999999999999986554332 122345666677777
Q ss_pred HcCCCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHhCChHHHHHHHHHHHHh-----c-CCCHHHHHHHHHH
Q 000176 1726 EYGNPPEEAVVKVFQRALQYCDPK-------KVHLALLGLYERTEQNKLADELLYKMIKK-----F-KHSCKVWLRRVQR 1792 (1924)
Q Consensus 1726 ~~g~~~~e~a~~vferAl~~~~~~-------~i~~~l~~i~~~~gk~e~A~~~fe~~lk~-----~-~~~~~vw~~~a~~ 1792 (1924)
..| +.++|.+.|++|++..+.. .+|..++.+|...|++++|.+.|++++.. . +....+|..++..
T Consensus 196 ~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 273 (383)
T 3ulq_A 196 DLK--QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQI 273 (383)
T ss_dssp HTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred Hhc--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 889 5599999999999875321 68999999999999999999999999983 4 5567889999999
Q ss_pred HHhc-CHHHHHHHHHHHHHhCCCCC---hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 000176 1793 LLKQ-QQEGVQAVVQRALLSLPRHK---HIKFISQTAILEFKNGV---ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1865 (1924)
Q Consensus 1793 l~~~-~~~~A~~l~~ral~~~p~~~---~~~~~~~~A~le~~~g~---~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~ 1865 (1924)
+... ++++|...|++++...+... ....+..++.++...|+ +++|..++++. ...|....++..++.++.+.
T Consensus 274 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~ 352 (383)
T 3ulq_A 274 HYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHER 352 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHC
Confidence 9999 99999999999998754321 12335668888889998 88888888886 33344456888999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 000176 1866 GDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1866 gd~~~ar~lferal~ 1880 (1924)
|++++|...|++++.
T Consensus 353 g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 353 KNFQKASAYFLKVEQ 367 (383)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999999997
|
| >3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.9e-10 Score=133.33 Aligned_cols=75 Identities=29% Similarity=0.614 Sum_probs=71.2
Q ss_pred CCCcEEEEEEEEeecceEEEEEec-CceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIEN-TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~-~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
++|++|.|+|++|.+||+||+|++ .+++||||+|++++.++.++.+.|++||.|.|+|+++|+++++|+||+|..
T Consensus 10 ~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk~~ 85 (275)
T 3aev_A 10 EEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRV 85 (275)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESTTC
T ss_pred CCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEEEEeec
Confidence 589999999999999999999973 389999999999999999999999999999999999999999999999984
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.09 E-value=2.3e-09 Score=125.60 Aligned_cols=227 Identities=14% Similarity=0.118 Sum_probs=173.9
Q ss_pred HcCCHHHHHHHHHHHHHhcCC---cchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC------CC---HHHHHH
Q 000176 1687 SMADVEKARSIAERALQTINI---REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC------DP---KKVHLA 1754 (1924)
Q Consensus 1687 ~~~e~dkAr~v~eraL~~i~~---~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~------~~---~~i~~~ 1754 (1924)
..+++++|...|++|++.... ........+|..+...+...| +.+.|...|++|++.. +. ..+|..
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN--KYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 468999999999999985421 112345678888888888899 5599999999999873 22 278999
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC-----C-CCChHH
Q 000176 1755 LLGLYERTEQNKLADELLYKMIKKF--------KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL-----P-RHKHIK 1819 (1924)
Q Consensus 1755 l~~i~~~~gk~e~A~~~fe~~lk~~--------~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~-----p-~~~~~~ 1819 (1924)
++.+|...|++++|.+.|++++..+ +....+|..++..+... ++++|...|++++... + ......
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 9999999999999999999999874 44577899999999999 9999999999999872 1 112357
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhcCCC
Q 000176 1820 FISQTAILEFKNGVADRGRSMFEGILSE---------YPKRTDLWSIYLDQEIRLGD------VDLIRGLFERAISLSLP 1884 (1924)
Q Consensus 1820 ~~~~~A~le~~~g~~e~Ar~lfe~aL~~---------~Pk~~dlw~~y~~le~k~gd------~~~ar~lferal~~~~~ 1884 (1924)
++..+|.+++..|++++|...|++++.. .+....+|......+...+. +..+...++.+.. ..
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 248 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DS 248 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CC
Confidence 8999999999999999999999999986 44555678887777765443 3334444443322 44
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1885 PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1885 pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
|... ..|..+..+....|+.+.|..++++|++.
T Consensus 249 ~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 249 PTVN-TTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555 57888888889999999999999999863
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.08 E-value=4.4e-09 Score=120.51 Aligned_cols=167 Identities=13% Similarity=0.066 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHH---HHHH
Q 000176 1716 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK----KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCK---VWLR 1788 (1924)
Q Consensus 1716 lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~----~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~---vw~~ 1788 (1924)
.|..........| +.++|...|+++++..|.. ..|+.++.+|.+.|++++|.+.|+++++.+|.++. +|+.
T Consensus 6 ~~~~~a~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 6 EIYATAQQKLQDG--NWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHT--CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 4555556666778 4599999999999987752 78999999999999999999999999999987754 6777
Q ss_pred HHHHHHh------------------c-CHHHHHHHHHHHHHhCCCCChHH---------------HHHHHHHHHHHcCCH
Q 000176 1789 RVQRLLK------------------Q-QQEGVQAVVQRALLSLPRHKHIK---------------FISQTAILEFKNGVA 1834 (1924)
Q Consensus 1789 ~a~~l~~------------------~-~~~~A~~l~~ral~~~p~~~~~~---------------~~~~~A~le~~~g~~ 1834 (1924)
.+..+.. . ++++|...|+++++.+|.+.... .....|.++++.|++
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~ 163 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW 163 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 7776654 4 78999999999999999875321 114678888999999
Q ss_pred HHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 000176 1835 DRGRSMFEGILSEYPKRT---DLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1886 (1924)
Q Consensus 1835 e~Ar~lfe~aL~~~Pk~~---dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk 1886 (1924)
+.|...|++++..+|+.. ++|...+..+.+.|+++.|+..|+++.. .+|+
T Consensus 164 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~--~~~~ 216 (225)
T 2yhc_A 164 VAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA--NSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--CCSC
T ss_pred HHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCC
Confidence 999999999999999976 5799999999999999999999999887 4443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.8e-08 Score=125.74 Aligned_cols=237 Identities=6% Similarity=-0.115 Sum_probs=150.8
Q ss_pred CCCchHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHH----c
Q 000176 1656 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLS----MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE----Y 1727 (1924)
Q Consensus 1656 ~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~----~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~----~ 1727 (1924)
+.+++...|+++.. ++++..|..++.++.. .+++++|...|++|...-. ...|..+..++.. .
T Consensus 94 ~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-------~~a~~~Lg~~y~~g~g~~ 164 (490)
T 2xm6_A 94 DYAQAVIWYKKAAL--KGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGR-------DSGQQSMGDAYFEGDGVT 164 (490)
T ss_dssp CHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHTSSSC
T ss_pred CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHcCCCCC
Confidence 35566666666654 3466677777776666 5677777777777765321 2234444444443 3
Q ss_pred CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----hCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----c-CH
Q 000176 1728 GNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER----TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK----Q-QQ 1798 (1924)
Q Consensus 1728 g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~----~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~----~-~~ 1798 (1924)
+ +.++|.+.|++|++. .....|..++.+|.. .+++++|...|++++.. .++..++.++.++.. . ++
T Consensus 165 ~--d~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~ 239 (490)
T 2xm6_A 165 R--DYVMAREWYSKAAEQ-GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDY 239 (490)
T ss_dssp C--CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred C--CHHHHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH
Confidence 3 457777777777765 345677777777776 67777777777777764 456677777777765 4 77
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHH
Q 000176 1799 EGVQAVVQRALLSLPRHKHIKFISQTAILEFK----NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-----GDVD 1869 (1924)
Q Consensus 1799 ~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~----~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~-----gd~~ 1869 (1924)
++|...|++++... +...+..+|.++.. .+++++|..+|++++.. .+.+.+..++.++... ++++
T Consensus 240 ~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~ 313 (490)
T 2xm6_A 240 TQSRVLFSQSAEQG----NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNRE 313 (490)
T ss_dssp HHHHHHHHHHHTTT----CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHH
T ss_pred HHHHHHHHHHHHCC----CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHH
Confidence 77777777777542 24677777777776 67777777777777643 4566777777777766 7777
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 000176 1870 LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVG---EEERIEYVKQKAME 1917 (1924)
Q Consensus 1870 ~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G---~~~~~~~v~~rAle 1917 (1924)
+|..+|++++. ..+. ..|.....+....| +.+.+...|++|++
T Consensus 314 ~A~~~~~~a~~--~~~~---~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 314 QAISWYTKSAE--QGDA---TAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp HHHHHHHHHHH--TTCH---HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCH---HHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 77777777777 2222 23333333433335 56667777777665
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.07 E-value=4.6e-09 Score=120.37 Aligned_cols=174 Identities=8% Similarity=-0.063 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH----H
Q 000176 1675 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK----K 1750 (1924)
Q Consensus 1675 ~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~----~ 1750 (1924)
...|...+..+++.|++++|...|+++++..|..... ...|..+.......+ +.++|...|+++++..|.. .
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~--~~a~~~lg~~~~~~~--~~~~A~~~~~~~l~~~P~~~~~~~ 79 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYS--QQVQLDLIYAYYKNA--DLPLAQAAIDRFIRLNPTHPNIDY 79 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTH--HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH--HHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHCcCCCcHHH
Confidence 4556666666666777777777777777665543211 124444455555666 3366777777777666653 3
Q ss_pred HHHHHHHHHHH------------------hCChHHHHHHHHHHHHhcCCCHHHH-----------------HHHHHHHHh
Q 000176 1751 VHLALLGLYER------------------TEQNKLADELLYKMIKKFKHSCKVW-----------------LRRVQRLLK 1795 (1924)
Q Consensus 1751 i~~~l~~i~~~------------------~gk~e~A~~~fe~~lk~~~~~~~vw-----------------~~~a~~l~~ 1795 (1924)
.|+.++.+|.. .|++++|...|+++++.+|++..+| +.++.++++
T Consensus 80 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~ 159 (225)
T 2yhc_A 80 VMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE 159 (225)
T ss_dssp HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555655544 5678899999999998888877665 567778888
Q ss_pred c-CHHHHHHHHHHHHHhCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 000176 1796 Q-QQEGVQAVVQRALLSLPRHKH-IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT 1852 (1924)
Q Consensus 1796 ~-~~~~A~~l~~ral~~~p~~~~-~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~ 1852 (1924)
. ++++|...|+++++.+|.... ..++...|..+.+.|++++|+..|++++...|+..
T Consensus 160 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 160 RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 8 999999999999999998743 37899999999999999999999999999998753
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.07 E-value=4.1e-09 Score=107.91 Aligned_cols=129 Identities=19% Similarity=0.207 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
..|..++.+|...|++++|...|++++...+.....|..++..+... ++++|..+|++++...|.. ..+|..+|.++
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS--AEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc--hHHHHHHHHHH
Confidence 36888899999999999999999999998888899999999998888 9999999999999988776 57889999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
...|++++|..+|++++...|....+|..++.++.+.|++++|...|++++.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999987
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.06 E-value=6.7e-10 Score=122.01 Aligned_cols=162 Identities=15% Similarity=0.114 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 000176 1751 VHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEF 1829 (1924)
Q Consensus 1751 i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~ 1829 (1924)
.++.++..+.+.|++++|...|++++...|++..+|+.++..+... ++++|...|++++...| + ...+...+.+.+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~--~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-D--NSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C--hHHHHHHHHHHH
Confidence 3455555666666666666666666666666666666666666666 66666666666666655 3 233333333322
Q ss_pred -HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh--HHHHHHHHHHHHHHcCCHH
Q 000176 1830 -KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK--MKFLFKKYLEYEKSVGEEE 1906 (1924)
Q Consensus 1830 -~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~--~k~lw~~yl~~E~~~G~~~ 1906 (1924)
..+....|...|++++...|++..+|..++..+...|+++.|...|++++. ..|.. . ..|..+.......|+.+
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~-~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK--VNLGAQDG-EVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTTTTT-HHHHHHHHHHHHHCSSC
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCcccChH-HHHHHHHHHHHHhCCCC
Confidence 212223356666666666666666666666666666666666666666665 33321 2 24555555555566666
Q ss_pred HHHHHHHHHHHH
Q 000176 1907 RIEYVKQKAMEY 1918 (1924)
Q Consensus 1907 ~~~~v~~rAle~ 1918 (1924)
.+...|++|+..
T Consensus 162 ~A~~~y~~al~~ 173 (176)
T 2r5s_A 162 AIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 666666666543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=4.5e-09 Score=125.40 Aligned_cols=169 Identities=10% Similarity=-0.040 Sum_probs=102.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHH
Q 000176 1671 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKK 1750 (1924)
Q Consensus 1671 ~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~ 1750 (1924)
-|++...|+..+..+.+.|++++|...|+++++..|... ..|..+..++...| +.++|...|++++...|...
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~-----~a~~~la~~~~~~g--~~~~A~~~l~~~~~~~p~~~ 185 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG-----EIGLLLAETLIALN--RSEDAEAVLXTIPLQDQDTR 185 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH-----HHHHHHHHHHHHTT--CHHHHHHHHTTSCGGGCSHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch-----hHHHHHHHHHHHCC--CHHHHHHHHHhCchhhcchH
Confidence 477888888888888888888888888888887766432 35666666666666 44666767776666665432
Q ss_pred H-HHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1751 V-HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1751 i-~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
. +......+.+.++.+.|.+.|++++...|++..+|+.++..+... ++++|...|+++++..|......++..++.++
T Consensus 186 ~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 186 YQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 2 222222344445555555555555555555555555555555555 55555555555555555543335555555555
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 000176 1829 FKNGVADRGRSMFEGILS 1846 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~ 1846 (1924)
...|+.+.|...|+++|.
T Consensus 266 ~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 266 AALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCcHHHHHHHHHH
Confidence 555555555555555543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.05 E-value=3e-09 Score=120.39 Aligned_cols=163 Identities=11% Similarity=0.003 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHH----------------HHHHHHhc-CHHHHHHHHHHHHHhC
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLR----------------RVQRLLKQ-QQEGVQAVVQRALLSL 1812 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~----------------~a~~l~~~-~~~~A~~l~~ral~~~ 1812 (1924)
..++..+..+.+.|++++|...|++++...|.++.+|+. ++..+... ++++|...|+++++..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 345666677888899999999999999888888888888 99999999 9999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCchhHHH
Q 000176 1813 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD--VDLIRGLFERAISLSLPPKKMKF 1890 (1924)
Q Consensus 1813 p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd--~~~ar~lferal~~~~~pk~~k~ 1890 (1924)
|.+ ..+|..+|.+++..|++++|...|++++...|++.+.|..++.++...|+ ...+...|.+++. .+|...
T Consensus 85 p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-- 158 (208)
T 3urz_A 85 PNN--VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY-- 158 (208)
T ss_dssp TTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH--
T ss_pred CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH--
Confidence 987 68999999999999999999999999999999999999999999877654 4556778888765 444332
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1891 LFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1891 lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
.|..........|+++.|...|++|++.
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 2222222233468899999999998753
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-09 Score=119.34 Aligned_cols=160 Identities=16% Similarity=0.148 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000176 1716 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL 1794 (1924)
Q Consensus 1716 lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~ 1794 (1924)
.++.........| +.++|...|+++++..|.. ..|..++.+|...|++++|...|++++...| ++..+..++...+
T Consensus 8 ~~~~~a~~~~~~g--~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQG--EHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTT--CHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence 4777788888889 5699999999999998875 9999999999999999999999999999888 7877766655433
Q ss_pred -hc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHH
Q 000176 1795 -KQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR--TDLWSIYLDQEIRLGDVDL 1870 (1924)
Q Consensus 1795 -~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~--~dlw~~y~~le~k~gd~~~ 1870 (1924)
.. ....|...|++++...|.+ ..+|..+|.++...|++++|...|+++++..|.. ..+|..++.++...|+.+.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDN--FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HhhcccchHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 22 4456899999999999987 5899999999999999999999999999999976 5599999999999999999
Q ss_pred HHHHHHHHHh
Q 000176 1871 IRGLFERAIS 1880 (1924)
Q Consensus 1871 ar~lferal~ 1880 (1924)
|...|++++.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999986
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.8e-09 Score=109.43 Aligned_cols=118 Identities=10% Similarity=-0.029 Sum_probs=104.7
Q ss_pred HHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHH
Q 000176 1742 ALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIK 1819 (1924)
Q Consensus 1742 Al~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~ 1819 (1924)
+...+|.. ..|...++.|.+.|++++|.+.|+++++..|.++.+|..++..+... ++++|...|+++++..|.+ ..
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~ 82 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF--IK 82 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh--hH
Confidence 33334443 78888999999999999999999999999999999999999999999 9999999999999999887 68
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000176 1820 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1861 (1924)
Q Consensus 1820 ~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~l 1861 (1924)
+|..+|..++..|++++|...|+++|+..|++.+++..+..+
T Consensus 83 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 83 GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999999999999999998877654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.3e-07 Score=113.71 Aligned_cols=232 Identities=10% Similarity=0.007 Sum_probs=185.3
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMAD----------VEKARSIAERALQTINIREENEKLNIWVAYFNLENE 1726 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e----------~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~ 1726 (1924)
.+++.+.++++|..+|++..+|..-..+....+. ++++...++.++...|-. ..+|.....+...
T Consensus 46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKn-----y~aW~hR~wlL~~ 120 (331)
T 3dss_A 46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS-----YGTWHHRCWLLSR 120 (331)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHhc
Confidence 6688999999999999999999887777665543 688999999999876643 3589988888888
Q ss_pred cCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCC-hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc--------
Q 000176 1727 YGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQ-NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-------- 1796 (1924)
Q Consensus 1727 ~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk-~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-------- 1796 (1924)
++.+..+.+.+.+.++++..|. ..+|....-++...+. ++++.+.+.+++...+.+..+|...+..+...
T Consensus 121 l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~ 200 (331)
T 3dss_A 121 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 200 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC----
T ss_pred cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccccc
Confidence 8742258899999999999886 4999999999999998 59999999999999999999999888776643
Q ss_pred -------CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 000176 1797 -------QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN-----------GVADRGRSMFEGILSEYPKRTDLWSIY 1858 (1924)
Q Consensus 1797 -------~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~-----------g~~e~Ar~lfe~aL~~~Pk~~dlw~~y 1858 (1924)
.++++.+.+.+++...|.+. .+|.....++... +.++++...++.++...|++.-.+..+
T Consensus 201 ~~~~~~~~~~eEle~~~~ai~~~P~d~--SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~ 278 (331)
T 3dss_A 201 QGRLPENVLLKELELVQNAFFTDPNDQ--SAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI 278 (331)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHH
Confidence 37889999999999999984 7887666665544 357899999999999999984333333
Q ss_pred HHHHH---HcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000176 1859 LDQEI---RLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1901 (1924)
Q Consensus 1859 ~~le~---k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~ 1901 (1924)
+.+.. ..+..++++..|.+++. +.|-+. .+|.+++.+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~----~~y~d~~~~ 318 (331)
T 3dss_A 279 ILLMRALDPLLYEKETLQYFSTLKA--VDPMRA----AYLDDLRSK 318 (331)
T ss_dssp HHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGH----HHHHHHHHH
T ss_pred HHHHHhhcccccHHHHHHHHHHHHH--hCcchh----hHHHHHHHH
Confidence 33322 25778899999999998 777665 244455543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3.6e-09 Score=139.07 Aligned_cols=152 Identities=11% Similarity=0.031 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHH
Q 000176 1732 EEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1809 (1924)
Q Consensus 1732 ~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral 1809 (1924)
.++|.+.|++|++..|. ...|..++.+|.+.|++++|.+.|+++++..+.+..+|+.++..+... ++++|.+.|++++
T Consensus 5 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 84 (568)
T 2vsy_A 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQAS 84 (568)
T ss_dssp ----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 48899999999999887 499999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCch
Q 000176 1810 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL---GDVDLIRGLFERAISLSLPPK 1886 (1924)
Q Consensus 1810 ~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~---gd~~~ar~lferal~~~~~pk 1886 (1924)
+..|.+ ..+|..+|.+++..|++++|...|+++++..|++..+|..++.++... |++++|...|++++. ..|.
T Consensus 85 ~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~--~~p~ 160 (568)
T 2vsy_A 85 DAAPEH--PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA--QGVG 160 (568)
T ss_dssp HHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH--HTCC
T ss_pred hcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh--cCCc
Confidence 999887 589999999999999999999999999999999999999999999999 999999999999998 4444
Q ss_pred h
Q 000176 1887 K 1887 (1924)
Q Consensus 1887 ~ 1887 (1924)
.
T Consensus 161 ~ 161 (568)
T 2vsy_A 161 A 161 (568)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.7e-08 Score=117.72 Aligned_cols=228 Identities=11% Similarity=0.107 Sum_probs=186.9
Q ss_pred HHHHHHHcCCH-HHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCCH-HHHHHHHH
Q 000176 1681 YMAFMLSMADV-EKARSIAERALQTINIREENEKLNIWVAYFNLENEYG-NPPEEAVVKVFQRALQYCDPK-KVHLALLG 1757 (1924)
Q Consensus 1681 y~~~~~~~~e~-dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g-~~~~e~a~~vferAl~~~~~~-~i~~~l~~ 1757 (1924)
|....++.+++ ++|...++++|...|.. ..+|.....+....+ . ..+++.+.++++++.+|.. .+|.....
T Consensus 38 ~~~a~~~~~e~s~~aL~~t~~~L~~nP~~-----~taWn~R~~~L~~l~~~-~~~eeL~~~~~~L~~nPk~y~aW~~R~~ 111 (306)
T 3dra_A 38 LLLALMKAEEYSERALHITELGINELASH-----YTIWIYRFNILKNLPNR-NLYDELDWCEEIALDNEKNYQIWNYRQL 111 (306)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHTCTTS-CHHHHHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCcHH-----HHHHHHHHHHHHHcccc-cHHHHHHHHHHHHHHCcccHHHHHHHHH
Confidence 33444455555 68999999999876642 358988777777666 3 3599999999999999975 99999999
Q ss_pred HH----HHh---CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHH--HHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000176 1758 LY----ERT---EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQE--GVQAVVQRALLSLPRHKHIKFISQTAIL 1827 (1924)
Q Consensus 1758 i~----~~~---gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~--~A~~l~~ral~~~p~~~~~~~~~~~A~l 1827 (1924)
++ ... ++++++.+.+++++..+|.+..+|...+-.+... .++ ++.+.+++++...|.+ ..+|..-+.+
T Consensus 112 iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N--~sAW~~R~~l 189 (306)
T 3dra_A 112 IIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN--NSAWSHRFFL 189 (306)
T ss_dssp HHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC--HHHHHHHHHH
Confidence 88 666 7899999999999999999999999998888777 777 9999999999999988 4799999998
Q ss_pred HHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHH
Q 000176 1828 EFKNGV------ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD-VDLIRGLFERAISLS-LPPKKMKFLFKKYLEYE 1899 (1924)
Q Consensus 1828 e~~~g~------~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd-~~~ar~lferal~~~-~~pk~~k~lw~~yl~~E 1899 (1924)
....+. ++++...+++++..+|.+..+|+....++.+.|. .+.+...+++++..+ ..++.. ..|.-.++..
T Consensus 190 l~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~al~~la~~~ 268 (306)
T 3dra_A 190 LFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSS-FALETLAKIY 268 (306)
T ss_dssp HHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCH-HHHHHHHHHH
T ss_pred HHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCH-HHHHHHHHHH
Confidence 888887 9999999999999999999999999888888886 444677788777622 113344 4566666666
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 000176 1900 KSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1900 ~~~G~~~~~~~v~~rAle 1917 (1924)
.+.|+.++|..+|+++.+
T Consensus 269 ~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 269 TQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HccCCHHHHHHHHHHHHh
Confidence 678999999999999875
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.98 E-value=5.8e-09 Score=129.46 Aligned_cols=224 Identities=10% Similarity=-0.002 Sum_probs=181.0
Q ss_pred cCCCCchHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcch--hhHHHHHHHHHHHHH
Q 000176 1654 EKDAPRTPDEFERLVRSS------PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREE--NEKLNIWVAYFNLEN 1725 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~------P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee--~ekl~lWiayl~le~ 1725 (1924)
.++..+|...|++++... |.....|..++.++...+++++|...+++|+...+...+ ......|..+.....
T Consensus 114 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~ 193 (378)
T 3q15_A 114 QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD 193 (378)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 566889999999998642 235678889999999999999999999999986553322 123456777777788
Q ss_pred HcCCCCHHHHHHHHHHHHhcCC---C----HHHHHHHHHHHHHhCChHHHHHHHHHHHH-----hcCCCHHHHHHHHHHH
Q 000176 1726 EYGNPPEEAVVKVFQRALQYCD---P----KKVHLALLGLYERTEQNKLADELLYKMIK-----KFKHSCKVWLRRVQRL 1793 (1924)
Q Consensus 1726 ~~g~~~~e~a~~vferAl~~~~---~----~~i~~~l~~i~~~~gk~e~A~~~fe~~lk-----~~~~~~~vw~~~a~~l 1793 (1924)
..+ +.+.|.+.|++|++..+ . ..+|..++.+|...|++++|.+.|++++. ..+....++..++..+
T Consensus 194 ~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 271 (378)
T 3q15_A 194 DFK--HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271 (378)
T ss_dssp HTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HhC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence 889 55999999999998642 2 26899999999999999999999999998 5566688999999999
Q ss_pred Hhc-CHHHHHHHHHHHHHhCCCC---ChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000176 1794 LKQ-QQEGVQAVVQRALLSLPRH---KHIKFISQTAILEFKNGV---ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1866 (1924)
Q Consensus 1794 ~~~-~~~~A~~l~~ral~~~p~~---~~~~~~~~~A~le~~~g~---~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~g 1866 (1924)
... ++++|...|++++...+.. .....+..++.++...++ +++|...|++. ...|....++..++.++.+.|
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g 350 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSC 350 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCC
Confidence 999 9999999999999987642 223455666667777888 88888888872 233444567888999999999
Q ss_pred CHHHHHHHHHHHHh
Q 000176 1867 DVDLIRGLFERAIS 1880 (1924)
Q Consensus 1867 d~~~ar~lferal~ 1880 (1924)
++++|...|++++.
T Consensus 351 ~~~~A~~~~~~al~ 364 (378)
T 3q15_A 351 HFEQAAAFYRKVLK 364 (378)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999997
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=6.9e-09 Score=136.36 Aligned_cols=152 Identities=13% Similarity=0.158 Sum_probs=125.1
Q ss_pred hCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 000176 1762 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1840 (1924)
Q Consensus 1762 ~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~l 1840 (1924)
+|++++|.+.|+++++..+.+..+|+.++..+... ++++|.+.|+++++..|.+ ..+|..+|.+++..|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH--PEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC--HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHH
Confidence 57889999999999999999999999999999999 9999999999999999877 58999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHH
Q 000176 1841 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSV---GEEERIEYVKQKAME 1917 (1924)
Q Consensus 1841 fe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~---G~~~~~~~v~~rAle 1917 (1924)
|+++++..|++..+|..++..+.+.|++++|...|++++. +.|... ..|..+....... |+.+.+...+++|++
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~-~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ--LLPEEP-YITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999 677776 5788888888888 999999999999987
Q ss_pred H
Q 000176 1918 Y 1918 (1924)
Q Consensus 1918 ~ 1918 (1924)
.
T Consensus 157 ~ 157 (568)
T 2vsy_A 157 Q 157 (568)
T ss_dssp H
T ss_pred c
Confidence 5
|
| >3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B* | Back alignment and structure |
|---|
Probab=98.96 E-value=3.5e-10 Score=130.97 Aligned_cols=78 Identities=28% Similarity=0.513 Sum_probs=72.9
Q ss_pred cccCCCcEEEEEEEEeecceEEEEEec-CceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1453 SNLHVGDIVIGQIKRVESYGLFITIEN-TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1453 ~~l~~G~~v~G~V~~v~~~GvFV~l~~-~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
..+++|+++.|+|++|.+||+||+|++ .++.||+|+||+++.++.++.+.|++||.|.|+|+++|+++++|.||+|..
T Consensus 7 ~~~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSlk~~ 85 (266)
T 3cw2_C 7 KLPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKKV 85 (266)
T ss_dssp SSCCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEESTTS
T ss_pred ccCCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEEEEec
Confidence 457899999999999999999999962 389999999999999999999999999999999999999999999999985
|
| >3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.92 E-value=8.6e-10 Score=149.74 Aligned_cols=81 Identities=11% Similarity=0.189 Sum_probs=76.3
Q ss_pred cccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCccc-ccCcccccCCCcEEEEEEEEEecCCCeeEEeccc
Q 000176 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529 (1924)
Q Consensus 1451 ~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~-~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~ 1529 (1924)
+..++++|++|.|+|++|.+||+||+|+. +++||||+|+|++.+ +.++.+.|++||.|+|+|++||.+++||+||||.
T Consensus 896 t~~~l~~G~iv~G~V~~V~~fGaFV~L~~-gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~ 974 (1219)
T 3psi_A 896 SEKTFFKGSIIPVRVERFWHNDIICTTNS-EVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLD 974 (1219)
T ss_dssp CTTTSCTTCEEEEEEEEECSSCEEEECTT-SCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEECCH
T ss_pred cHhhCCCCCEEEEEEEEEecceEEEEeCC-CceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEecH
Confidence 46899999999999999999999999965 899999999999998 8899999999999999999999999999999998
Q ss_pred ccc
Q 000176 1530 SYF 1532 (1924)
Q Consensus 1530 s~~ 1532 (1924)
+.+
T Consensus 975 ~dl 977 (1219)
T 3psi_A 975 HDV 977 (1219)
T ss_dssp HHH
T ss_pred HHh
Confidence 644
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.92 E-value=2.1e-09 Score=115.16 Aligned_cols=107 Identities=8% Similarity=-0.045 Sum_probs=72.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000176 1772 LYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1850 (1924)
Q Consensus 1772 fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk 1850 (1924)
|++++...|++...|+.++..+++. ++++|...|++++...|.+ ..+|..+|..++..|++++|...|+++++..|+
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~--~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN--VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 3444444555666667777666666 7777777777777776665 466777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1851 RTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1851 ~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
+..+|..++..+.+.|+++.|...|++++.
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777777777777777776
|
| >1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A | Back alignment and structure |
|---|
Probab=98.91 E-value=3.8e-11 Score=156.67 Aligned_cols=128 Identities=20% Similarity=0.372 Sum_probs=53.8
Q ss_pred CCCCEE--EEEEEE--EeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecccc
Q 000176 1366 SPNMIV--QGYVKN--VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441 (1924)
Q Consensus 1366 k~G~~v--~G~V~~--v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~ 1441 (1924)
+.|+++ .|++.+ +.++|+||+++. +|.|+++..++...+...+ +|.. ..
T Consensus 608 ki~~vIG~gGk~Ik~I~~~~G~~IdI~~--dG~v~Is~~~~~~~~~a~~--------------------~i~~-----i~ 660 (757)
T 1e3p_A 608 KIGEVIGPKRQMINQIQEDTGAEITIED--DGTIYIGAADGPAAEAARA--------------------TING-----IA 660 (757)
T ss_dssp -------------CTTCCCCCSCC----------CCCBSSHHHHCC----------------------------------
T ss_pred HeehcccccceeeehhhHhhCCEEEecC--CceEEEecCCHHHHHHHHH--------------------HHHH-----hc
Confidence 455555 356665 478999999984 8999999887654332111 1100 00
Q ss_pred cccchhccccccccCCCcEEEEEEEEeecceEEEEEecCceeEEeecccc----CcccccCcccccCCCcEEEEEEEEEe
Q 000176 1442 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSEL----SEDHVDNIETIYRAGEKVKVKILKVD 1517 (1924)
Q Consensus 1442 ~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sel----s~~~~~~~~~~~~~Gd~Vk~~Vl~id 1517 (1924)
+ ..++++|++|.|+|++|.+||+||+|.+ +++||+|+|++ +|.+++++.+.|++||.|+|+|+++|
T Consensus 661 ~---------p~~~~vG~i~~G~V~~i~~fGaFV~l~~-g~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~vd 730 (757)
T 1e3p_A 661 N---------PTSPEVGERILGSVVKTTTFGAFVSLLP-GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEID 730 (757)
T ss_dssp ---------------------CBEEECC-CSCEECCC----CCCCC-------------------CCSSCBCCCCCCCCC
T ss_pred c---------hhhcccccEEEEEEEEccccEEEEEEcC-CcEEEEEhHHhccccCCCcccCcccccCCCCEEEEEEEEEC
Confidence 1 1468899999999999999999999987 89999999999 99999999999999999999999999
Q ss_pred cCCCeeEEeccccc
Q 000176 1518 KEKRRISLGMKSSY 1531 (1924)
Q Consensus 1518 ~e~~ri~lslK~s~ 1531 (1924)
+ ++||+||+|+..
T Consensus 731 ~-~grI~LS~k~~~ 743 (757)
T 1e3p_A 731 S-RGKLSLIPVIEG 743 (757)
T ss_dssp S-SCC---------
T ss_pred C-CCCEEEEEecCC
Confidence 8 999999999853
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2.9e-08 Score=106.49 Aligned_cols=129 Identities=13% Similarity=-0.001 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
..|..++..+...|++++|...|++++...+.+..+|..++..+... ++++|...|++++...|.. ..+|..+|.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY--IKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--HHHHHHHHHHH
Confidence 67888899999999999999999999999999999999999999999 9999999999999998876 58999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHh
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ--EIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~l--e~k~gd~~~ar~lferal~ 1880 (1924)
+..|++++|...|++++...|.+..+|..+... +.+.|++++|..+|+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999998888555444 7778899999988888764
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.91 E-value=4.7e-09 Score=128.29 Aligned_cols=144 Identities=13% Similarity=0.028 Sum_probs=127.1
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHhc-C
Q 000176 1735 VVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHS---------------CKVWLRRVQRLLKQ-Q 1797 (1924)
Q Consensus 1735 a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~---------------~~vw~~~a~~l~~~-~ 1797 (1924)
|.+.|++++...+.. ..|..++.+|.+.|++++|...|++++...+.. ..+|++++..+++. +
T Consensus 132 A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~ 211 (336)
T 1p5q_A 132 AKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA 211 (336)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 444455555444433 788899999999999999999999999998877 69999999999999 9
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHH
Q 000176 1798 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI-RGLFE 1876 (1924)
Q Consensus 1798 ~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~a-r~lfe 1876 (1924)
+++|...|++++...|.+ ..+|..+|.+++..|++++|+..|+++++..|++..+|..++.++.+.|++++| +.+|.
T Consensus 212 ~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~ 289 (336)
T 1p5q_A 212 FSAAIESCNKALELDSNN--EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYA 289 (336)
T ss_dssp HHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 689999999999999999999999999999999999999999999999999988 66777
Q ss_pred HHHh
Q 000176 1877 RAIS 1880 (1924)
Q Consensus 1877 ral~ 1880 (1924)
+++.
T Consensus 290 ~~~~ 293 (336)
T 1p5q_A 290 NMFE 293 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=98.90 E-value=9.5e-09 Score=105.06 Aligned_cols=106 Identities=18% Similarity=0.218 Sum_probs=89.6
Q ss_pred CCCHHHHHHHHHHHHhc-CH------HHHHHHHHHHHHhCCCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1780 KHSCKVWLRRVQRLLKQ-QQ------EGVQAVVQRALLSLPRHKH------IKFISQTAILEFKNGVADRGRSMFEGILS 1846 (1924)
Q Consensus 1780 ~~~~~vw~~~a~~l~~~-~~------~~A~~l~~ral~~~p~~~~------~~~~~~~A~le~~~g~~e~Ar~lfe~aL~ 1846 (1924)
+.+++.|..|+..+.+. ++ ++.+++|+||+...|..++ +.+|..||.++ ..+|+++||.+|+.++.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~-ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK-AIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH-HHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHH
Confidence 56888888888888877 66 8888999999988876432 57899999885 55899999999999998
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1847 EYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1847 ~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
.+.+..-+|..|++||+++|+..+||.++.+|+. +.|+..
T Consensus 89 ~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG--~~~k~~ 128 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVE--RGAVPL 128 (161)
T ss_dssp HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCBCH
T ss_pred HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCCCcH
Confidence 8777788999999999999999999999999999 666555
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.89 E-value=6.1e-08 Score=99.06 Aligned_cols=132 Identities=19% Similarity=0.196 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000176 1716 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL 1794 (1924)
Q Consensus 1716 lWiayl~le~~~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~ 1794 (1924)
.|..+.......+ +.+.|...|+++++..+. ...|..++.++...+++++|...|++++...+....+|..++..+.
T Consensus 3 ~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQG--DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--cHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 5777777778888 569999999999998875 4889999999999999999999999999999999999999999999
Q ss_pred hc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000176 1795 KQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1851 (1924)
Q Consensus 1795 ~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~ 1851 (1924)
.. ++++|...|++++...|.. ..+|..+|.++...|++++|...|++++...|..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRS--AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HhcCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 99 9999999999999998876 5899999999999999999999999999998863
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.2e-07 Score=114.55 Aligned_cols=229 Identities=12% Similarity=0.066 Sum_probs=186.1
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHc-C-CCCHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA-DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEY-G-NPPEE 1733 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~-e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~-g-~~~~e 1733 (1924)
.+++.+.++++|..+|++..+|..-.......+ .++++.+.++.+|...|.. ..+|.....+.... + .+ +
T Consensus 70 se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn-----y~aW~hR~wlL~~l~~~~~--~ 142 (349)
T 3q7a_A 70 SERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS-----YQVWHHRLLLLDRISPQDP--V 142 (349)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHCCSCC--H
T ss_pred CHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHhcCCCh--H
Confidence 678999999999999999999999999998888 5999999999999877743 35898877777766 5 55 7
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChH--------HHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-C------
Q 000176 1734 AVVKVFQRALQYCDP-KKVHLALLGLYERTEQNK--------LADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q------ 1797 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e--------~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~------ 1797 (1924)
++.+.++++++..|. ..+|....-++.+.+.++ ++.+.+++++...+.+..+|...+..+... .
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchH
Confidence 889999999999886 499999999998888887 999999999999999999999998877666 5
Q ss_pred -HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHhC------CC
Q 000176 1798 -QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA--------------------DRGRSMFEGILSEY------PK 1850 (1924)
Q Consensus 1798 -~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~--------------------e~Ar~lfe~aL~~~------Pk 1850 (1924)
++++.+.+.+++...|.+. .+|.....++.+.|.. +........++... +.
T Consensus 223 ~~~eELe~~~~aI~~~P~n~--SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNV--SAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred HHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 7999999999999999984 8998888888777654 22222233332222 57
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000176 1851 RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1896 (1924)
Q Consensus 1851 ~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl 1896 (1924)
...+|..+++++...|+.++|..+|+.+.. +..|-+. .+|.-.+
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~-~~dpir~-~yw~~~~ 344 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSS-EYDQMRA-GYWEFRR 344 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCGGGH-HHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hhChHHH-HHHHHHH
Confidence 788999999999999999999999999775 5777666 4665443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.2e-08 Score=118.10 Aligned_cols=185 Identities=9% Similarity=-0.021 Sum_probs=140.1
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC------CHHHHH
Q 000176 1721 FNLENEYGNPPEEAVVKVFQRALQYCDP-------KKVHLALLGLYERTEQNKLADELLYKMIKKFKH------SCKVWL 1787 (1924)
Q Consensus 1721 l~le~~~g~~~~e~a~~vferAl~~~~~-------~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~------~~~vw~ 1787 (1924)
.+++...+ +.+.|...|++|+...+. -..|..++.+|...|++++|.+.|++++..+.. ....|.
T Consensus 43 ~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~ 120 (307)
T 2ifu_A 43 AVAFKNAK--QLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALD 120 (307)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHcC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34556678 459999999999987532 268999999999999999999999999988632 245677
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCCC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 000176 1788 RRVQRLLKQQQEGVQAVVQRALLSLPRHK----HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR------TDLWSI 1857 (1924)
Q Consensus 1788 ~~a~~l~~~~~~~A~~l~~ral~~~p~~~----~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~------~dlw~~ 1857 (1924)
.++..+...++++|...|++|+...+... ...++..+|.++...|++++|...|++++...|+. ...|..
T Consensus 121 ~lg~~~~~g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (307)
T 2ifu_A 121 RAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA 200 (307)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 88877744499999999999999876532 24789999999999999999999999999986643 236777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC---chhHHHHHHHHHHHHHHcCCHHHHHH
Q 000176 1858 YLDQEIRLGDVDLIRGLFERAISLSLP---PKKMKFLFKKYLEYEKSVGEEERIEY 1910 (1924)
Q Consensus 1858 y~~le~k~gd~~~ar~lferal~~~~~---pk~~k~lw~~yl~~E~~~G~~~~~~~ 1910 (1924)
.+..+...|++++|+..|++++ .... .... .+....+... ..|+.+....
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~-~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDC-AALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHH-HHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHH-HHHHHHHHHH-HhcCHHHHHH
Confidence 7788888999999999999999 4321 1122 2233333322 3577665554
|
| >3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A | Back alignment and structure |
|---|
Probab=98.87 E-value=2.3e-10 Score=148.88 Aligned_cols=116 Identities=24% Similarity=0.530 Sum_probs=0.0
Q ss_pred EEEE-eeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecccccccchhcccccc
Q 000176 1375 VKNV-TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS 1453 (1924)
Q Consensus 1375 V~~v-~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~~~~~~~~~~~~ 1453 (1924)
|+.+ .+.|+||+++. +|.++++...+...+...+ +| . ....
T Consensus 582 I~~I~~~~G~~IdI~~--dg~v~I~~~~~~~~~~a~~--------------------~i---------~-------~i~~ 623 (723)
T 3cdi_A 582 IRALTEETGTTIEIED--DGTVKIAATDGEKAKHAIR--------------------RI---------E-------EITA 623 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeeehhhCceEEecC--CccEEEecCCHHHHHHHHH--------------------HH---------H-------HHhh
Confidence 4455 45799999985 7888887655432221110 00 0 0135
Q ss_pred ccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
++++|++|.|+|++|.+||+||+|.+ +++||+|+|++++.+++++.+.|++||.|+|+|+++|+ ++||+||+|+.
T Consensus 624 ~~~vG~i~~G~V~~i~~fGaFVel~~-g~eGLvHiSel~~~~v~~~~~~~~vGd~V~VkVi~vd~-~grI~LS~k~~ 698 (723)
T 3cdi_A 624 EIEVGRVYTGKVTRIVDFGAFVAIGG-GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEA 698 (723)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred hhhcCcEEEEEEEEEecceEEEEeCC-CceEEEEHHHcCCccccCcccccCCCCEEEEEEEEECC-CCcEEEEEEec
Confidence 78999999999999999999999987 89999999999999999999999999999999999997 99999999985
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-08 Score=109.52 Aligned_cols=113 Identities=6% Similarity=-0.076 Sum_probs=105.3
Q ss_pred HHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCC
Q 000176 1738 VFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH 1815 (1924)
Q Consensus 1738 vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~ 1815 (1924)
.|++++...|.. ..|+.++..+.+.|++++|...|++++...|.++.+|+.++..+... ++++|...|++|+...|.+
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~ 103 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND 103 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence 366777777765 89999999999999999999999999999999999999999999999 9999999999999999988
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 000176 1816 KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT 1852 (1924)
Q Consensus 1816 ~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~ 1852 (1924)
. .+|..+|..+...|++++|+..|++++...|+..
T Consensus 104 ~--~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 104 Y--TPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp C--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred c--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 4 8999999999999999999999999999999764
|
| >3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A | Back alignment and structure |
|---|
Probab=98.86 E-value=8.9e-10 Score=144.08 Aligned_cols=79 Identities=35% Similarity=0.605 Sum_probs=75.0
Q ss_pred cccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1451 ~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
.+.++++|+++.|+|++|++||+||+|+. +++||||+|+|++.++.++.+.|++||.|+|+|++||.+++||+||+|.+
T Consensus 648 ~~~~l~vG~iv~G~V~~V~~fGaFV~l~~-~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~VD~~~~rI~LSlk~~ 726 (785)
T 3bzc_A 648 SLKDLKPGMVLEGVVTNVTNFGAFVDIGV-HQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSMRMS 726 (785)
T ss_dssp SSTTCCTTCBCCCEEEEEETTEEEEECSS-SSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEETTTTEEEECCSSC
T ss_pred chhhcCCCCEEEEEEEEEecCCeEEEeCC-CcEEEEEHHHcCccccCChhheeCCCCEEEEEEEEEECCCCEEEEEEecC
Confidence 47789999999999999999999999965 89999999999999999999999999999999999999999999999864
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=98.85 E-value=3.4e-08 Score=101.09 Aligned_cols=114 Identities=11% Similarity=0.047 Sum_probs=74.8
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 000176 1669 RSSPNSSFVWIKYMAFMLSMADV------EKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRA 1742 (1924)
Q Consensus 1669 ~~~P~s~~~W~~y~~~~~~~~e~------dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferA 1742 (1924)
...|++++.|..|+......|+. ++.|++|+||+..+|+.. . ..|-.|+.+-.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k--~--~~wrrYI~LWI----------------- 65 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK--Y--GQNESFARIQV----------------- 65 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG--G--TTCHHHHHHHH-----------------
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc--c--ccHHHHHHHHH-----------------
Confidence 45799999999999999988988 999999999999999752 1 24544444422
Q ss_pred HhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCC
Q 000176 1743 LQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH 1815 (1924)
Q Consensus 1743 l~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~ 1815 (1924)
.||.+ ...++.++|+++|+.+++....-.++|+.||+|..++ +..+|+.++.+|+..+|..
T Consensus 66 -----------rYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 66 -----------RFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp -----------HHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred -----------HHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 22211 1123444555555555444334477777777777777 7777777777777776654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=3.3e-08 Score=105.39 Aligned_cols=116 Identities=7% Similarity=-0.104 Sum_probs=93.4
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC
Q 000176 1737 KVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1814 (1924)
Q Consensus 1737 ~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~ 1814 (1924)
..|++|+...|.. ..|+.++..+.+.|++++|...|++++...|.++.+|+.++..+... ++++|...|++++...|.
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4577777777654 77888888888888888888888888888888888888888888888 888888888888888877
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 000176 1815 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL 1854 (1924)
Q Consensus 1815 ~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dl 1854 (1924)
+. .+|..+|.++...|++++|+..|++++...|++.+.
T Consensus 88 ~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 88 EP--RFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp CT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred Cc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 63 778888888888888888888888888887776544
|
| >3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B* | Back alignment and structure |
|---|
Probab=98.83 E-value=2.9e-10 Score=131.62 Aligned_cols=78 Identities=18% Similarity=0.291 Sum_probs=73.6
Q ss_pred ccCCCCEEEEEEEEEecCeEEEEEC--CCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000176 758 HIHPNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1924)
Q Consensus 758 ~~~~G~~~~G~V~~i~~~G~fV~f~--~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~~ 835 (1924)
.+++|+++.|+|++|+++|+||++. +++.||+|.|++++.++.++.+.|++||.|.|+|+++|++++++.||+|....
T Consensus 8 ~~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSlk~~~~ 87 (266)
T 3cw2_C 8 LPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKKVTD 87 (266)
T ss_dssp SCCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEESTTSCT
T ss_pred cCCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEEEEecch
Confidence 4678999999999999999999997 89999999999999999999999999999999999999999999999998753
|
| >1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=6.8e-09 Score=115.04 Aligned_cols=77 Identities=25% Similarity=0.518 Sum_probs=68.8
Q ss_pred ccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCccccc-----------CcccccCCCcEEEEEEEEEecCCC-
Q 000176 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-----------NIETIYRAGEKVKVKILKVDKEKR- 1521 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~-----------~~~~~~~~Gd~Vk~~Vl~id~e~~- 1521 (1924)
...+|+++.|+|+++.+||+||+|. .++||+|+|++++.++. +....|++||.|+++|+++|.+++
T Consensus 78 ~~~~Gev~~G~V~~v~~~G~fV~l~--~~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~ 155 (187)
T 1go3_E 78 IPEMYELIEGEVVDVVEFGSFVRLG--PLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAER 155 (187)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECS--SSEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC--
T ss_pred ccCCCCEEEEEEEEEeCcEEEEEEc--CccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccCC
Confidence 4678999999999999999999996 49999999999988765 677899999999999999998765
Q ss_pred ----eeEEecccccc
Q 000176 1522 ----RISLGMKSSYF 1532 (1924)
Q Consensus 1522 ----ri~lslK~s~~ 1532 (1924)
||.||+|..++
T Consensus 156 p~~~~I~lS~k~~~L 170 (187)
T 1go3_E 156 KRGSKIALTMRQPYL 170 (187)
T ss_dssp ---CEEEEECCSTTC
T ss_pred CCccEEEEEEcCCCC
Confidence 99999998765
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.5e-08 Score=106.86 Aligned_cols=118 Identities=10% Similarity=-0.084 Sum_probs=89.0
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC
Q 000176 1737 KVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1814 (1924)
Q Consensus 1737 ~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~ 1814 (1924)
..|++++...|.. ..|+.++..+.+.|++++|...|++++...|.++.+|+.++..+... ++++|...|++++...|.
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3566666666654 67777888888888888888888888888888888888888888877 888888888888888877
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000176 1815 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1856 (1924)
Q Consensus 1815 ~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~ 1856 (1924)
+. .+|..+|.+++..|++++|...|++++...|.+...+.
T Consensus 85 ~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 85 EP--RFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp CT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred Cc--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 63 67788888888888888888888888887776655443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.2e-08 Score=108.23 Aligned_cols=117 Identities=10% Similarity=0.110 Sum_probs=71.0
Q ss_pred hCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHH-HHHcCCH--HHH
Q 000176 1762 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL-EFKNGVA--DRG 1837 (1924)
Q Consensus 1762 ~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~l-e~~~g~~--e~A 1837 (1924)
.+++++|...|++++...|.+..+|+.++..+... ++++|...|+++++..|.+ ..+|..+|.+ ++..|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN--AELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC--HHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhcCCcchHHH
Confidence 45555666666666666666666666666666666 6666666666666666554 3566666666 5556665 666
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1838 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1838 r~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
...|++++...|.+..+|..++.++...|+++.|...|++++.
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 6666666666666666666666666666666666666666665
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=8.8e-08 Score=97.59 Aligned_cols=117 Identities=14% Similarity=0.014 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
..|..++.++...+++++|...|++++...+.+..+|..++..+... ++++|...|++++...|.. ..+|..+|.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY--SKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC--HHHHHHHHHHH
Confidence 67888888899999999999999999988888899999999998888 9999999999999988876 57889999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV 1868 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~ 1868 (1924)
+..|++++|...|++++...|.+..+|..++.++.+.|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999988999888888887764
|
| >3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.81 E-value=4.8e-10 Score=150.06 Aligned_cols=81 Identities=11% Similarity=0.189 Sum_probs=0.4
Q ss_pred cccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCccc-ccCcccccCCCcEEEEEEEEEecCCCeeEEeccc
Q 000176 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529 (1924)
Q Consensus 1451 ~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~-~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~ 1529 (1924)
...++++|++|.|+|++|.+||+||+|+. +++||||+|+|++.+ +.++.+.|++||.|+|+|++||.+++||+||||.
T Consensus 899 t~~~l~~G~iv~G~V~~V~~fGaFV~L~~-gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~ 977 (1030)
T 3psf_A 899 SEKTFFKGSIIPVRVERFWHNDIICTTNS-EVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLD 977 (1030)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred cHHHhcCCCEEEEEEEEEccCeEEEEeCC-CcEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEech
Confidence 46899999999999999999999999975 899999999999998 8899999999999999999999999999999998
Q ss_pred ccc
Q 000176 1530 SYF 1532 (1924)
Q Consensus 1530 s~~ 1532 (1924)
+.+
T Consensus 978 ~dl 980 (1030)
T 3psf_A 978 HDV 980 (1030)
T ss_dssp ---
T ss_pred HHh
Confidence 644
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=98.80 E-value=5e-07 Score=122.56 Aligned_cols=149 Identities=10% Similarity=0.019 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC--------------
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR-------------- 1814 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~-------------- 1814 (1924)
..|..++..+...|++++|...|.++ ..|.+++..+.+. ++++|.+.+.+|....+.
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHH
Confidence 34445555555555555555555553 2455555555555 555555555554221110
Q ss_pred ---------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCC
Q 000176 1815 ---------HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL--GDVDLIRGLFERAISLSL 1883 (1924)
Q Consensus 1815 ---------~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~--gd~~~ar~lferal~~~~ 1883 (1924)
..|.+.+...+.+|...|.+++|..+||.+|...|.+..+|..++.++.+. +++..+..+|+..+. +
T Consensus 1268 LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rin--i 1345 (1630)
T 1xi4_A 1268 LAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--I 1345 (1630)
T ss_pred HHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--c
Confidence 012345557777888999999999999999999999999999988888875 466677888888776 6
Q ss_pred Cc-----hhHHHHHHHHHHHHHHcCCHHHHH
Q 000176 1884 PP-----KKMKFLFKKYLEYEKSVGEEERIE 1909 (1924)
Q Consensus 1884 ~p-----k~~k~lw~~yl~~E~~~G~~~~~~ 1909 (1924)
++ .++ .+|..+.-+..++|+++.|.
T Consensus 1346 ~k~~r~~e~~-~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1346 PKVLRAAEQA-HLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred chHhHHHHHH-HHHHHHHHHHHhcccHHHHH
Confidence 65 566 68999999999999998776
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.80 E-value=5.4e-08 Score=99.87 Aligned_cols=116 Identities=10% Similarity=-0.050 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
..|..++.++.+.+++++|...|++++...+.+..+|..++..+... ++++|...|+++++..|.. ..+|..+|.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF--IKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc--hHHHHHHHHHH
Confidence 67888888888888899999999888888888888888888888888 8888988999888888775 57888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1867 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd 1867 (1924)
+..|++++|+..|++++...|.+..+|..++.++.+.|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888889999999999888888888888888888776653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.79 E-value=4.1e-08 Score=101.53 Aligned_cols=113 Identities=10% Similarity=-0.050 Sum_probs=103.0
Q ss_pred hcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000176 1778 KFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1856 (1924)
Q Consensus 1778 ~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~ 1856 (1924)
..|+....|...|..+++. ++++|...|++|++..|.+ ..+|..+|..++..|++++|...|++++...|++..+|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN--AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 3456677899999999999 9999999999999999987 589999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 000176 1857 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1895 (1924)
Q Consensus 1857 ~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~y 1895 (1924)
.++..+...|++++|...|++++. +.|... ..+..+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~--l~P~~~-~a~~~l 121 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQ--VDPSNE-EAREGV 121 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--HCcCCH-HHHHHH
Confidence 999999999999999999999999 777776 455443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-08 Score=124.67 Aligned_cols=155 Identities=10% Similarity=0.030 Sum_probs=134.9
Q ss_pred CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh-------------HHHHHHHHHHH
Q 000176 1763 EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-------------IKFISQTAILE 1828 (1924)
Q Consensus 1763 gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~-------------~~~~~~~A~le 1828 (1924)
.++++|.+.|++++...+.....|..++..+++. ++++|...|++|+...|.... ..+|..+|.++
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777766667788999999999999 999999999999999988731 48999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1908 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~ 1908 (1924)
++.|++++|...|+++|...|++..+|+.++..+...|+++.|+..|++++. +.|... ..|..+.......|+.+.+
T Consensus 207 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~-~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNK-AAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCH-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 777777 5788888888888888777
Q ss_pred -HHHHHHHHHHHH
Q 000176 1909 -EYVKQKAMEYVE 1920 (1924)
Q Consensus 1909 -~~v~~rAle~v~ 1920 (1924)
+..|.+++..+.
T Consensus 284 ~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 284 EKKLYANMFERLA 296 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 567777776554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.79 E-value=4.5e-08 Score=116.34 Aligned_cols=191 Identities=11% Similarity=-0.070 Sum_probs=152.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-H
Q 000176 1672 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-K 1750 (1924)
Q Consensus 1672 P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~ 1750 (1924)
|++...|...+..+...|++++|...|++|++..|.. ..+|..+...+...+ +.++|...|++|++..|.. .
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~ 73 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-----AVYYTNRALCYLKMQ--QPEQALADCRRALELDGQSVK 73 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-----HHHHHHHHHHHHHTT--CHHHHHHHHHHHTTSCTTCHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc-----HHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCCHH
Confidence 6788999999999999999999999999999887753 357888888888999 5599999999999998874 8
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 000176 1751 VHLALLGLYERTEQNKLADELLYKMIKKFKHS-----CKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTA 1825 (1924)
Q Consensus 1751 i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~-----~~vw~~~a~~l~~~~~~~A~~l~~ral~~~p~~~~~~~~~~~A 1825 (1924)
.|+.++.+|...|++++|...|++++...|++ ..+|..+. ..++...........+... .+...++
T Consensus 74 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~--~i~~~l~ 144 (281)
T 2c2l_A 74 AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR-------IAKKKRWNSIEERRIHQES--ELHSYLT 144 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH-------HHHHHHHHHHHHTCCCCCC--HHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhH--HHHHHHH
Confidence 99999999999999999999999999877643 33444331 2222333333334455553 5666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Q 000176 1826 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-GDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1826 ~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~-gd~~~ar~lferal~ 1880 (1924)
.+. .|++++|...|++++...|.+..++..+..++.+. +.+++|+.+|+++..
T Consensus 145 ~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 145 RLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 654 68999999999999999999888888887777776 678899999998875
|
| >4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A | Back alignment and structure |
|---|
Probab=98.78 E-value=7e-10 Score=143.38 Aligned_cols=77 Identities=31% Similarity=0.528 Sum_probs=0.0
Q ss_pred ccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1452 ~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
..++++|++|.|+|++|.+||+||+|.+ +++||||+|++++.++.++.+.|++||.|+|+|+++|+ ++||+||+|..
T Consensus 632 ~~~~~vG~v~~G~V~~I~~fGaFVel~~-g~eGLvHiSels~~rv~~~~d~~kvGD~V~VkVi~iD~-~grI~LS~K~~ 708 (726)
T 4aid_A 632 TDEAEVGKIYDGKVVKVVDFGAFVNFFG-AKDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFDD-RGKTKLSMKVV 708 (726)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred hhhhcCCcEEEEEEEEEeccEEEEEECC-CcEEEEEHHHcCcccccCccccCCCCCEEEEEEEEECC-CCcEEEEEeec
Confidence 4688999999999999999999999987 89999999999999999999999999999999999997 89999999984
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.77 E-value=8.9e-08 Score=107.72 Aligned_cols=129 Identities=11% Similarity=0.078 Sum_probs=71.0
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-C
Q 000176 1719 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q 1797 (1924)
Q Consensus 1719 ayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~ 1797 (1924)
.........+ +.++|...|++|+ .+...+|..++.+|...|++++|.+.|++++...+....+|+.++..+... +
T Consensus 11 ~~g~~~~~~~--~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 11 NEGVLAADKK--DWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhC--CHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 3334444445 2355555555553 223455555555555556666666666655555555555555555555555 5
Q ss_pred HHHHHHHHHHHHHhCCCCC--------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000176 1798 QEGVQAVVQRALLSLPRHK--------------HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1851 (1924)
Q Consensus 1798 ~~~A~~l~~ral~~~p~~~--------------~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~ 1851 (1924)
+++|...|++++...|... ...+|..+|.+++..|++++|...|++++...|+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 5556556666555555432 23455555555555555555555555555555554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.76 E-value=7.2e-08 Score=116.05 Aligned_cols=190 Identities=9% Similarity=-0.005 Sum_probs=146.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCcc-hhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-------HH
Q 000176 1679 IKYMAFMLSMADVEKARSIAERALQTINIRE-ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-------KK 1750 (1924)
Q Consensus 1679 ~~y~~~~~~~~e~dkAr~v~eraL~~i~~~e-e~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~-------~~ 1750 (1924)
.+.+..+...+++++|...|++|+...+... .......|.....++...+++ ++|...|++|++.... ..
T Consensus 40 ~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~--~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 40 AKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRM--PEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG--GGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3345667789999999999999997543211 112235666777777788854 9999999999987421 27
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh----HH
Q 000176 1751 VHLALLGLYERTEQNKLADELLYKMIKKFKHS------CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH----IK 1819 (1924)
Q Consensus 1751 i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~------~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~----~~ 1819 (1924)
.|..++.+|.. |++++|.+.|++++..++.. ..+|..++.++... ++++|...|++++...|.... ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 88999999998 99999999999999887532 67899999999999 999999999999998654421 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHcCCHHHHHH
Q 000176 1820 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTD-----LWSIYLDQEIRLGDVDLIRG 1873 (1924)
Q Consensus 1820 ~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d-----lw~~y~~le~k~gd~~~ar~ 1873 (1924)
++...+.+++..|++++|+..|++++ ..|.... ++..++..+ ..|+.+.++.
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 78888889999999999999999999 8886432 233333332 5678776655
|
| >3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.76 E-value=8.9e-09 Score=139.97 Aligned_cols=82 Identities=15% Similarity=0.165 Sum_probs=77.9
Q ss_pred hhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcc-cCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeec
Q 000176 1360 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY-VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438 (1924)
Q Consensus 1360 ~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~-~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~ 1438 (1924)
+++.++++|++|.|+|++|+++|+||+|+.+++|+||+|+|+|.+ +.+|.+.|++||.|+|+|++||.++++|.||+|.
T Consensus 895 et~~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~ 974 (1219)
T 3psi_A 895 ESEKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLD 974 (1219)
T ss_dssp CCTTTSCTTCEEEEEEEEECSSCEEEECTTSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEECCH
T ss_pred CcHhhCCCCCEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEecH
Confidence 456889999999999999999999999999999999999999998 8999999999999999999999999999999998
Q ss_pred ccc
Q 000176 1439 SDS 1441 (1924)
Q Consensus 1439 ~~~ 1441 (1924)
+..
T Consensus 975 ~dl 977 (1219)
T 3psi_A 975 HDV 977 (1219)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
|
| >2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-08 Score=113.59 Aligned_cols=79 Identities=18% Similarity=0.237 Sum_probs=71.5
Q ss_pred ccCCCcEEEEEEEEeecceEEEEEec-------CceeEEeeccccCccccc--CcccccCCCcEEEEEEEEEecCCCeeE
Q 000176 1454 NLHVGDIVIGQIKRVESYGLFITIEN-------TNLVGLCHVSELSEDHVD--NIETIYRAGEKVKVKILKVDKEKRRIS 1524 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~GvFV~l~~-------~~v~gl~h~sels~~~~~--~~~~~~~~Gd~Vk~~Vl~id~e~~ri~ 1524 (1924)
.+++||+|.|+|++|.+||+||+|.. .++.|++|+||+++.+++ ++.+.|++||.|+|+|++++.+.+++.
T Consensus 78 ~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i~ 157 (209)
T 2nn6_I 78 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYL 157 (209)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEEE
T ss_pred CCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeEE
Confidence 57999999999999999999999852 267999999999999888 899999999999999999997778999
Q ss_pred Eecccccc
Q 000176 1525 LGMKSSYF 1532 (1924)
Q Consensus 1525 lslK~s~~ 1532 (1924)
||+|...+
T Consensus 158 LS~k~~~l 165 (209)
T 2nn6_I 158 LTTAENEL 165 (209)
T ss_dssp EECCSSSC
T ss_pred EEEecCCC
Confidence 99998544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.4e-07 Score=96.74 Aligned_cols=112 Identities=12% Similarity=0.044 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
..|..++..+.+.|++++|...|++++...|.++.+|..++..+... ++++|...|++++...|.+ ..+|..+|..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF--VRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHH
Confidence 45666777777777777777777777777777777777777777777 7777777777777777665 46777777777
Q ss_pred HHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHH
Q 000176 1829 FKNGVADRGRSMFEGILSEY------PKRTDLWSIYLDQEI 1863 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~------Pk~~dlw~~y~~le~ 1863 (1924)
+..|++++|...|++++... |.+..+|..+.....
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 77777777777777777777 666666666655443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=98.75 E-value=7.5e-07 Score=120.91 Aligned_cols=194 Identities=16% Similarity=0.105 Sum_probs=136.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHH
Q 000176 1672 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKV 1751 (1924)
Q Consensus 1672 P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~i 1751 (1924)
.+++.+|.+|+..++..|++++|.+.|++|= + ...|...++...+.|. .++|.+.|..|.+..+...+
T Consensus 1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKAd-------D---~say~eVa~~~~~lGk--yEEAIeyL~mArk~~~e~~I 1169 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKAD-------D---PSSYMEVVQAANTSGN--WEELVKYLQMARKKARESYV 1169 (1630)
T ss_pred cCCHHHHHHHHHHHHhCCCHHHHHHHHHhcC-------C---hHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhcccccc
Confidence 5677777777777777777777777777761 1 1346666666667773 47777777777776655445
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 000176 1752 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1830 (1924)
Q Consensus 1752 ~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~ 1830 (1924)
...++..|.+.+++++ .+.| ++ ..+..-|..+|..+... ++++|..+|.+| ..|...|..+.+
T Consensus 1170 dt~LafaYAKl~rlee-le~f---I~--~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvk 1233 (1630)
T 1xi4_A 1170 ETELIFALAKTNRLAE-LEEF---IN--GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVH 1233 (1630)
T ss_pred cHHHHHHHHhhcCHHH-HHHH---Hh--CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHH
Confidence 5556777777766663 3333 21 23556788899999999 999999999996 478899999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHH------------------------------HHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1831 NGVADRGRSMFEGILSEYPKRTDLWS------------------------------IYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1831 ~g~~e~Ar~lfe~aL~~~Pk~~dlw~------------------------------~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
.|+++.|...++++ .+...|. ..+.+|.+.|.++.|..+||.++.
T Consensus 1234 Lge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1234 LGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred hCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999999999988 2234443 444556678888888888888887
Q ss_pred cCCCchhHHHHHHHHHHHHHH
Q 000176 1881 LSLPPKKMKFLFKKYLEYEKS 1901 (1924)
Q Consensus 1881 ~~~~pk~~k~lw~~yl~~E~~ 1901 (1924)
+.+..| .+|..+..+..+
T Consensus 1309 --LeraH~-gmftELaiLyaK 1326 (1630)
T 1xi4_A 1309 --LERAHM-GMFTELAILYSK 1326 (1630)
T ss_pred --cChhHh-HHHHHHHHHHHh
Confidence 666666 566444443333
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.75 E-value=2.5e-07 Score=93.34 Aligned_cols=115 Identities=16% Similarity=0.133 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
..|..++.++...+++++|.+.|++++..++....+|..++..+... ++++|...|++++...|.. ..+|..+|.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc--HHHHHHHHHHH
Confidence 67788888888888888888888888888888888888888888888 8888888888888887765 47888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1866 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~g 1866 (1924)
+..|++++|...|++++...|....+|..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888888888888888888888888887777765543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.74 E-value=2.3e-07 Score=99.36 Aligned_cols=135 Identities=10% Similarity=0.010 Sum_probs=117.7
Q ss_pred CHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000176 1782 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1860 (1924)
Q Consensus 1782 ~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~ 1860 (1924)
....|...+..++.. ++++|...|++++...|.. ..+|..+|.+++..|++++|...|++++..+|.+..+|..++.
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~ 89 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN--AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 356788999999999 9999999999999999876 6899999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000176 1861 QEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK--KYLEYEKSVGEEERIEYVKQKAMEYVES 1921 (1924)
Q Consensus 1861 le~k~gd~~~ar~lferal~~~~~pk~~k~lw~--~yl~~E~~~G~~~~~~~v~~rAle~v~~ 1921 (1924)
.+...|+++.|...|++++. +.|... ..|. ..+......|+++.|...+.++.+....
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~--~~p~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVK--VKPHDK-DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 149 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HSTTCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence 99999999999999999999 555555 3453 3333355678899999999998887654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=1.8e-07 Score=93.48 Aligned_cols=111 Identities=13% Similarity=-0.080 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
..|..++..+...|++++|...|++++...+.+..+|..++..+... ++++|...|++++...|.+ ..+|..+|.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW--GKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc--HHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777777 7777777777777777664 46777777777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1862 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le 1862 (1924)
...|++++|+..|++++...|.+..+|..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 7777777777777777777777777777666554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.74 E-value=3.4e-08 Score=115.55 Aligned_cols=207 Identities=13% Similarity=0.034 Sum_probs=157.5
Q ss_pred hcCCCCchHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHhcCC----cch-----------
Q 000176 1653 LEKDAPRTPDEFERLVRSSPNSSFVWIKY-------MAFMLSMADVEKARSIAERALQTINI----REE----------- 1710 (1924)
Q Consensus 1653 ~~~~~p~a~~~ferll~~~P~s~~~W~~y-------~~~~~~~~e~dkAr~v~eraL~~i~~----~ee----------- 1710 (1924)
...+..++...|.+++..+|...+.|+.+ ...+........+.-.+.|++..-|. +-.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 34557789999999999999999999999 46666666666777777777752221 000
Q ss_pred -hhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC---HHHH
Q 000176 1711 -NEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVW 1786 (1924)
Q Consensus 1711 -~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~---~~vw 1786 (1924)
..+-.+|++|..+++..|. .++|.+.|++++...|....++.++.++.+.+++++|...|+.+... ++. ..+|
T Consensus 98 v~~r~dl~LayA~~L~~~g~--y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~d~~~~~~a~ 174 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGN--YADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-PDKFLAGAAG 174 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTC--HHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-SCHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-CCcccHHHHH
Confidence 0123588889999888994 48899999888877775558888888889999999999999866542 222 3578
Q ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHhC--CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000176 1787 LRRVQRLLKQ-QQEGVQAVVQRALLSL--PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1863 (1924)
Q Consensus 1787 ~~~a~~l~~~-~~~~A~~l~~ral~~~--p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~ 1863 (1924)
+.++..+... ++++|...|++++... |.. ...+++.+|..+.++|+.++|+.+|++++...|. ..+|..+.+..+
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~-~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~~~ 252 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEANDSPAGEAC-ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDPSY 252 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCccc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCCCC
Confidence 8888888888 9999999999888543 322 3578888888899999999999999999999998 888877766554
Q ss_pred H
Q 000176 1864 R 1864 (1924)
Q Consensus 1864 k 1864 (1924)
+
T Consensus 253 ~ 253 (282)
T 4f3v_A 253 R 253 (282)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E | Back alignment and structure |
|---|
Probab=98.73 E-value=1.9e-08 Score=110.62 Aligned_cols=77 Identities=27% Similarity=0.645 Sum_probs=66.8
Q ss_pred ccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccc-----------cCcccccCCCcEEEEEEEEEecC---
Q 000176 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------DNIETIYRAGEKVKVKILKVDKE--- 1519 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~-----------~~~~~~~~~Gd~Vk~~Vl~id~e--- 1519 (1924)
+..+|++++|+|+++++||+||+++ .++||+|+|++++++. ++....|++||.|+++|+++|++
T Consensus 78 ~p~~Gev~~G~V~~v~~~G~fv~l~--~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~~~~~~ 155 (180)
T 4ayb_E 78 VPVVQEVVEGEVLQVDNYGVFVNLG--PMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVTG 155 (180)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECS--SSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEECC----
T ss_pred eccCCCEEEEEEeeeccceEEEEEC--CccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEeCCCCc
Confidence 5678999999999999999999996 5899999999999876 45667899999999999999965
Q ss_pred -CCeeEEecccccc
Q 000176 1520 -KRRISLGMKSSYF 1532 (1924)
Q Consensus 1520 -~~ri~lslK~s~~ 1532 (1924)
..||.||||+.+.
T Consensus 156 ~~~rI~ls~k~~gL 169 (180)
T 4ayb_E 156 RLPRIALTMRQPYL 169 (180)
T ss_dssp ---CEEEECCSTTC
T ss_pred ccCcEEEEcCCCCC
Confidence 4599999999765
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.7e-08 Score=106.05 Aligned_cols=109 Identities=7% Similarity=-0.107 Sum_probs=103.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 000176 1770 ELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY 1848 (1924)
Q Consensus 1770 ~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~ 1848 (1924)
..|++++...|.+...|+.++..++.. ++++|...|++++...|.+ ..+|..+|..++..|++++|...|++++...
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD--SRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 457888888888899999999999999 9999999999999999987 5899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1849 PKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1849 Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
|++..+|..++..+...|+++.|+..|++++.
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.71 E-value=4.8e-08 Score=116.08 Aligned_cols=188 Identities=11% Similarity=-0.103 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000176 1715 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1793 (1924)
Q Consensus 1715 ~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l 1793 (1924)
..|....+.....| +.++|...|++|++..|. ..+|..++.+|...|++++|...|++++...+.+..+|+.+|..+
T Consensus 5 ~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGR--KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 46777777777778 448888888888888775 478888888888888888888888888888888888888888888
Q ss_pred Hhc-CHHHHHHHHHHHHHhCCCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 000176 1794 LKQ-QQEGVQAVVQRALLSLPRHKH---IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD 1869 (1924)
Q Consensus 1794 ~~~-~~~~A~~l~~ral~~~p~~~~---~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~ 1869 (1924)
... ++++|...|++++...|.+.. ..+|..+. ..++...........|....++..+..+. .|+++
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~ 152 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR--------IAKKKRWNSIEERRIHQESELHSYLTRLI--AAERE 152 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH--------HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH--------HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHH
Confidence 888 888888888888887765421 02232221 12222333333345666667777776654 68899
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 000176 1870 LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSV-GEEERIEYVKQKAME 1917 (1924)
Q Consensus 1870 ~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~-G~~~~~~~v~~rAle 1917 (1924)
+|...|++++. +.|... .+......+..+. +.++.+..+|.+|.+
T Consensus 153 ~A~~~~~~al~--~~p~~~-~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHE--GHEDDG-HIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGT--TTSCHH-HHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhc--cccchh-hhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999998 666655 4555555555554 557778888877643
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.71 E-value=7.7e-08 Score=105.14 Aligned_cols=140 Identities=11% Similarity=0.080 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHhc-CH--HHHHHHHH
Q 000176 1732 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR-LLKQ-QQ--EGVQAVVQ 1806 (1924)
Q Consensus 1732 ~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~-l~~~-~~--~~A~~l~~ 1806 (1924)
.+.|...|+++++..|.. ..|..++.+|...|++++|...|++++...|.++.+|..++.. +... ++ ++|...|+
T Consensus 26 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~ 105 (177)
T 2e2e_A 26 PEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMID 105 (177)
T ss_dssp -CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 377899999999998864 9999999999999999999999999999999999999999999 6666 77 99999999
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1807 RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1807 ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
+++...|.+ ..+|..+|.+++..|++++|...|++++...|.+...+.... .+.+++.++.....
T Consensus 106 ~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~-------~i~~~~~~~~~~~~ 170 (177)
T 2e2e_A 106 KALALDSNE--ITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVE-------SINMAKLLQRRSDL 170 (177)
T ss_dssp HHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHhCCCc--HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHH-------HHHHHHHhcCCCCC
Confidence 999999987 589999999999999999999999999999998766554332 23455666555443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.70 E-value=6.9e-08 Score=112.89 Aligned_cols=199 Identities=7% Similarity=-0.123 Sum_probs=158.9
Q ss_pred HcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHH-------HHHHHHcCCCCHHHHHHHHHHHHhcCCC-----------
Q 000176 1687 SMADVEKARSIAERALQTINIREENEKLNIWVAY-------FNLENEYGNPPEEAVVKVFQRALQYCDP----------- 1748 (1924)
Q Consensus 1687 ~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiay-------l~le~~~g~~~~e~a~~vferAl~~~~~----------- 1748 (1924)
+.++.+.|+..|.+++...|... ..|+.+ .......... ..+...+.+++...|.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~-----Daw~g~~a~g~~~~~~L~~~~r~--~~a~~~~~~~l~l~p~~l~a~~~~~g~ 90 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESAC-----DAWIGRIRCGDTDRVTLFRAWYS--RRNFGQLSGSVQISMSTLNARIAIGGL 90 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHTTCCCHHHHHHHHHT--GGGTTHHHHTTTCCGGGGCCEEECCTT
T ss_pred cCCCHHHHHHHHHHHHHhChhhh-----HHHHhHHHccCCcHHHHHHHHHH--HHHHHHHHHHhcCChhhhhhhhccCCc
Confidence 46889999999999998877533 589988 4444444422 4566678888874431
Q ss_pred -----------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC
Q 000176 1749 -----------KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1816 (1924)
Q Consensus 1749 -----------~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~ 1816 (1924)
..+++.|+.++...|+|++|.++|+.++...|... .++..+..+++. ++++|...|+.++...+...
T Consensus 91 y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~ 169 (282)
T 4f3v_A 91 YGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFL 169 (282)
T ss_dssp TCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHH
T ss_pred ccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCccc
Confidence 47889999999999999999999999988777667 888888888888 99999999997765321111
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q 000176 1817 HIKFISQTAILEFKNGVADRGRSMFEGILSEY--PK-RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1893 (1924)
Q Consensus 1817 ~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~--Pk-~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~ 1893 (1924)
...+++..|..+...|++++|...|++++... |. ..++|+.++..+.++|+.++|+.+|++++. ..|. . ..|.
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~-~-~~~~ 245 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPE-P-KVAA 245 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCC-H-HHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc-H-HHHH
Confidence 13589999999999999999999999998654 66 667999999999999999999999999999 6666 4 4665
Q ss_pred HHHH
Q 000176 1894 KYLE 1897 (1924)
Q Consensus 1894 ~yl~ 1897 (1924)
...+
T Consensus 246 aL~~ 249 (282)
T 4f3v_A 246 ALKD 249 (282)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 5543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.5e-07 Score=101.65 Aligned_cols=108 Identities=10% Similarity=-0.073 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
..|..++.+|.+.+++++|.+.|++++...+.+..+|+.++..++.. ++++|...|++++...|.+ ..+|..+|.++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY--SKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Confidence 67888888999999999999999999999999999999999999988 9999999999999998876 58899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYL 1859 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~ 1859 (1924)
+..|++++|+..|++++...|++...|....
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999999998877665544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=98.70 E-value=4.4e-07 Score=115.53 Aligned_cols=137 Identities=12% Similarity=0.027 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHh----CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH---hc-CHHHHHH
Q 000176 1733 EAVVKVFQRALQYCDPK-KVHLALLGLYERT----EQNKLADELLYKMIKKFKHSCKVWLRRVQRLL---KQ-QQEGVQA 1803 (1924)
Q Consensus 1733 e~a~~vferAl~~~~~~-~i~~~l~~i~~~~----gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~---~~-~~~~A~~ 1803 (1924)
++|...|++|+...+.. ..|+.++.+|... .++++|...|+++. +.++..|+.++.+++ .. ++++|..
T Consensus 196 ~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~ 272 (452)
T 3e4b_A 196 AELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMK 272 (452)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 44555555555554443 3445555555433 45555555555555 345555555555432 12 5555555
Q ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 000176 1804 VVQRALLSLPRHKHIKFISQTAILEFKNG-----VADRGRSMFEGILSEYPKRTDLWSIYLDQEIR----LGDVDLIRGL 1874 (1924)
Q Consensus 1804 l~~ral~~~p~~~~~~~~~~~A~le~~~g-----~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k----~gd~~~ar~l 1874 (1924)
.|++++... +...+..+|.+++ .| ++++|...|++++ |.+...+..++.++.. ..++++|..+
T Consensus 273 ~~~~Aa~~g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 344 (452)
T 3e4b_A 273 YLDNGRAAD----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDH 344 (452)
T ss_dssp HHHHHHHTT----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHH
T ss_pred HHHHHHHCC----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHH
Confidence 555555332 2345555555554 33 5555555555555 5555555555555443 2255555555
Q ss_pred HHHHHh
Q 000176 1875 FERAIS 1880 (1924)
Q Consensus 1875 feral~ 1880 (1924)
|+++..
T Consensus 345 ~~~Aa~ 350 (452)
T 3e4b_A 345 LLTAAR 350 (452)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 555554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.69 E-value=3.4e-08 Score=104.19 Aligned_cols=114 Identities=10% Similarity=-0.014 Sum_probs=102.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 000176 1770 ELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY 1848 (1924)
Q Consensus 1770 ~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~ 1848 (1924)
..|++++...|.+...|+.++..++.. ++++|...|++++...|.+ ..+|..+|.+++..|++++|...|++++...
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD--ARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 456677777777888999999999999 9999999999999999987 5899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 000176 1849 PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1887 (1924)
Q Consensus 1849 Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~ 1887 (1924)
|.+..+|..++..+...|+++.|...|++++. +.|..
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~ 119 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARA--LAAAQ 119 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHTC
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCC
Confidence 99999999999999999999999999999998 44433
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.69 E-value=4.4e-07 Score=102.87 Aligned_cols=176 Identities=7% Similarity=-0.041 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc----CHHHHHHHHHHH
Q 000176 1733 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ----QQEGVQAVVQRA 1808 (1924)
Q Consensus 1733 e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~----~~~~A~~l~~ra 1808 (1924)
.+|...|++|++. .....++.++.+|...+++++|...|++++.. .++..|+.++.++... ++++|...|++|
T Consensus 3 ~eA~~~~~~aa~~-g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 3 TEPGSQYQQQAEA-GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIRNPQQADYPQARQLAEKA 79 (212)
T ss_dssp -CTTHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3467788888876 44678888888888888888999999888875 5788888888887766 788888888888
Q ss_pred HHhCCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 000176 1809 LLSLPRHKHIKFISQTAILEFK----NGVADRGRSMFEGILSEYPK--RTDLWSIYLDQEIR----LGDVDLIRGLFERA 1878 (1924)
Q Consensus 1809 l~~~p~~~~~~~~~~~A~le~~----~g~~e~Ar~lfe~aL~~~Pk--~~dlw~~y~~le~k----~gd~~~ar~lfera 1878 (1924)
++. . +...+..+|.+++. .+++++|..+|++++...|. ....+..++.++.. .+++++|..+|+++
T Consensus 80 ~~~--g--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 80 VEA--G--SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHT--T--CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHC--C--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 754 2 36788888888886 77888999999988887763 47788888888888 77888899999988
Q ss_pred HhcCCCchhHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHH
Q 000176 1879 ISLSLPPKKMKFLFKKYLEYEKSVG-----EEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1879 l~~~~~pk~~k~lw~~yl~~E~~~G-----~~~~~~~v~~rAle~ 1918 (1924)
+.. +.... ..+..-.-++...| |.+.|...|++|.+.
T Consensus 156 ~~~--~~~~~-a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 156 SSL--SRTGY-AEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHT--SCTTH-HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHc--CCCHH-HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 883 21111 22222223344444 788888888888764
|
| >3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A | Back alignment and structure |
|---|
Probab=98.69 E-value=6e-09 Score=136.39 Aligned_cols=82 Identities=33% Similarity=0.574 Sum_probs=77.7
Q ss_pred hhhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeec
Q 000176 1359 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438 (1924)
Q Consensus 1359 ~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~ 1438 (1924)
+..+.++++|+++.|+|++|+++|+||+|+.+++|+||+|+|+|.|+.+|.+.|++||.|+|+|+++|.++++|.||+|.
T Consensus 646 ve~~~~l~vG~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~VD~~~~rI~LSlk~ 725 (785)
T 3bzc_A 646 VESLKDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSMRM 725 (785)
T ss_dssp CCSSTTCCTTCBCCCEEEEEETTEEEEECSSSSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEETTTTEEEECCSS
T ss_pred ccchhhcCCCCEEEEEEEEEecCCeEEEeCCCcEEEEEHHHcCccccCChhheeCCCCEEEEEEEEEECCCCEEEEEEec
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cc
Q 000176 1439 SD 1440 (1924)
Q Consensus 1439 ~~ 1440 (1924)
..
T Consensus 726 ~~ 727 (785)
T 3bzc_A 726 SD 727 (785)
T ss_dssp CC
T ss_pred CC
Confidence 65
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.68 E-value=6.9e-07 Score=101.24 Aligned_cols=175 Identities=10% Similarity=-0.099 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC----ChHHH
Q 000176 1693 KARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE----QNKLA 1768 (1924)
Q Consensus 1693 kAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~g----k~e~A 1768 (1924)
+|...|+++.+.-+ ...|..+..++...+ +.++|...|++|++. .....++.++.+|.. + ++++|
T Consensus 4 eA~~~~~~aa~~g~-------~~a~~~lg~~~~~~~--~~~~A~~~~~~a~~~-g~~~a~~~lg~~y~~-~g~~~~~~~A 72 (212)
T 3rjv_A 4 EPGSQYQQQAEAGD-------RRAQYYLADTWVSSG--DYQKAEYWAQKAAAQ-GDGDALALLAQLKIR-NPQQADYPQA 72 (212)
T ss_dssp CTTHHHHHHHHTTC-------HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHT-TCHHHHHHHHHHTTS-STTSCCHHHH
T ss_pred hHHHHHHHHHHCCC-------HHHHHHHHHHHhcCC--CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHc-CCCCCCHHHH
Confidence 45566777775422 234555556656667 569999999999986 346889999999988 6 89999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHh----c-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH----cCCHHHHHH
Q 000176 1769 DELLYKMIKKFKHSCKVWLRRVQRLLK----Q-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK----NGVADRGRS 1839 (1924)
Q Consensus 1769 ~~~fe~~lk~~~~~~~vw~~~a~~l~~----~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~----~g~~e~Ar~ 1839 (1924)
...|++++.. .++..++.++.++.. . ++++|...|++|+...+...++.++..+|.++.. .+++++|..
T Consensus 73 ~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 73 RQLAEKAVEA--GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHHHHHC--CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 9999999864 689999999999987 5 9999999999999876543346899999999998 889999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhc
Q 000176 1840 MFEGILSEYPKRTDLWSIYLDQEIRL-G-----DVDLIRGLFERAISL 1881 (1924)
Q Consensus 1840 lfe~aL~~~Pk~~dlw~~y~~le~k~-g-----d~~~ar~lferal~~ 1881 (1924)
.|++++.. |.+...+..++.++..- | ++++|..+|++++..
T Consensus 151 ~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 151 YFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 99999988 66677888899988764 3 899999999999983
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=4.3e-06 Score=100.51 Aligned_cols=221 Identities=9% Similarity=-0.020 Sum_probs=169.6
Q ss_pred HHcCCHH-HHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCC---C-----CHHHHHHHHHHHHhcCCC-HHHHHHH
Q 000176 1686 LSMADVE-KARSIAERALQTINIREENEKLNIWVAYFNLENEYGN---P-----PEEAVVKVFQRALQYCDP-KKVHLAL 1755 (1924)
Q Consensus 1686 ~~~~e~d-kAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~---~-----~~e~a~~vferAl~~~~~-~~i~~~l 1755 (1924)
.+.+++. +|...++++|...|.. ..+|...-.+....+. + ..+++...++.++..+|. ..+|...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~-----ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR 114 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDF-----ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHR 114 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTC-----HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchh-----HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3456554 7999999999766632 3578765554444331 0 036778889999998886 5999999
Q ss_pred HHHHHHhCC--hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-C-HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc
Q 000176 1756 LGLYERTEQ--NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q-QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1831 (1924)
Q Consensus 1756 ~~i~~~~gk--~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~-~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~ 1831 (1924)
..++...++ ++++.+.+.+++...+.+..+|...+-.+... . ++++.+.+.+++...|.+ ..+|...+.+....
T Consensus 115 ~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N--~SAW~~R~~ll~~l 192 (331)
T 3dss_A 115 CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN--YSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC--HHHHHHHHHHHHHH
T ss_pred HHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHh
Confidence 999999885 89999999999999999999999998777776 5 699999999999999988 48999998888766
Q ss_pred --------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCch
Q 000176 1832 --------------GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-----------GDVDLIRGLFERAISLSLPPK 1886 (1924)
Q Consensus 1832 --------------g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~-----------gd~~~ar~lferal~~~~~pk 1886 (1924)
+.++++...+.+++..+|.+..+|+.+--++.+. +-.+++...|+.++. +.|+
T Consensus 193 ~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd 270 (331)
T 3dss_A 193 HPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPE 270 (331)
T ss_dssp SCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTT
T ss_pred hhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCcc
Confidence 4588999999999999999999998776666554 346789999999998 6776
Q ss_pred hHHHHHHHHHHHHHH---cCCHHHHHHHHHHHH
Q 000176 1887 KMKFLFKKYLEYEKS---VGEEERIEYVKQKAM 1916 (1924)
Q Consensus 1887 ~~k~lw~~yl~~E~~---~G~~~~~~~v~~rAl 1916 (1924)
.. ..+...+.+... .|..+++...+++.+
T Consensus 271 ~~-w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 302 (331)
T 3dss_A 271 NK-WCLLTIILLMRALDPLLYEKETLQYFSTLK 302 (331)
T ss_dssp CH-HHHHHHHHHHHHHCTTTTHHHHHHHHHHHH
T ss_pred cc-hHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 64 344444443322 455666666665554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.8e-07 Score=94.52 Aligned_cols=112 Identities=7% Similarity=-0.051 Sum_probs=100.2
Q ss_pred CHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000176 1782 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1860 (1924)
Q Consensus 1782 ~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~ 1860 (1924)
....|...+..++.. ++++|...|++++...|.. ..+|..+|..++..|++++|...|++++...|++...|..++.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED--ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 456799999999999 9999999999999999987 5899999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC------chhHHHHHHHHHHH
Q 000176 1861 QEIRLGDVDLIRGLFERAISLSLP------PKKMKFLFKKYLEY 1898 (1924)
Q Consensus 1861 le~k~gd~~~ar~lferal~~~~~------pk~~k~lw~~yl~~ 1898 (1924)
.+...|+++.|...|++++. +. |... .+|..+...
T Consensus 81 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~p~~~-~~~~~l~~~ 121 (126)
T 3upv_A 81 AQIAVKEYASALETLDAART--KDAEVNNGSSAR-EIDQLYYKA 121 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HHHHHHTTTTHH-HHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHH--hCcccCCchhHH-HHHHHHHHH
Confidence 99999999999999999998 55 5554 455554443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.6e-07 Score=94.74 Aligned_cols=119 Identities=10% Similarity=-0.030 Sum_probs=106.0
Q ss_pred CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 000176 1780 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY 1858 (1924)
Q Consensus 1780 ~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y 1858 (1924)
+.....|+.++..+... ++++|...|++++...|.+ ..+|..+|.+++..|++++|...|++++...|.+..+|..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD--AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC--HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 35678899999999999 9999999999999998876 68999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcC
Q 000176 1859 LDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVG 1903 (1924)
Q Consensus 1859 ~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G 1903 (1924)
+..+.+.|+++.|+..|++++. ..|... ..|..+.......|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~--~~p~~~-~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALD--LDSSCK-EAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCGGGT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHH--hCCCch-HHHHHHHHHHHHhc
Confidence 9999999999999999999998 666665 46666666555444
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.65 E-value=5.9e-07 Score=100.92 Aligned_cols=125 Identities=8% Similarity=-0.090 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 000176 1751 VHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEF 1829 (1924)
Q Consensus 1751 i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~ 1829 (1924)
.|+.++..+...|++++|.+.|++++ +.++.+|+.++..+... ++++|...|++++...|.. ..+|..+|.+++
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL--AVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--hHHHHHHHHHHH
Confidence 36778889999999999999999996 34789999999999999 9999999999999999876 689999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1830 KNGVADRGRSMFEGILSEYPKRT----------------DLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1830 ~~g~~e~Ar~lfe~aL~~~Pk~~----------------dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
..|++++|...|++++...|.+. .+|..++..+.+.|+++.|...|++++.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999999999999888766 8999999999999999999999999998
|
| >2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.65 E-value=4.3e-08 Score=96.34 Aligned_cols=85 Identities=31% Similarity=0.402 Sum_probs=67.4
Q ss_pred CCCCCEEEEEEEEE---eeceEEEEeCC-CcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeeccc
Q 000176 1365 LSPNMIVQGYVKNV---TSKGCFIMLSR-KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v---~~~G~fV~l~~-~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~ 1440 (1924)
...++.++|+|+.. ..+| |+.... +.++|||+++|.+...
T Consensus 11 ~~~~~~~~G~Vk~fn~~kGfG-FI~~~~gg~dvfvH~s~l~~~~~----------------------------------- 54 (101)
T 2bh8_A 11 RLQSGKMTGIVKWFNADKGFG-FITPDDGSKDVFVHFSAGSSGAA----------------------------------- 54 (101)
T ss_dssp -----CEEEEEEEEEGGGTEE-EEEESSSSCEEEEECCCSCSSSC-----------------------------------
T ss_pred ccccccceeEEEEEECCCCCE-EEEeCCCCcEEEEEEEEEecCCc-----------------------------------
Confidence 34678899999988 4478 887654 5899999999987521
Q ss_pred ccccchhccccccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccc
Q 000176 1441 SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1496 (1924)
Q Consensus 1441 ~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~ 1496 (1924)
....+++|++|++.|+++.+||+||+|.+ +++||||+|+|+|.++
T Consensus 55 ----------~~~~l~~Ge~V~g~V~~i~~fG~fv~l~~-~~eGlvhis~i~~~~~ 99 (101)
T 2bh8_A 55 ----------VRGNPQQGDRVEGKIKSITDFGIFIGLDG-GIDGLVHLSDISWAQA 99 (101)
T ss_dssp ----------CCCCCCTTCEEEEEEEECCSEEEEECTTS-CEEEEEEEEEEEECCC
T ss_pred ----------cccCCCCCCEEEEEEEEeCCcEEEEEcCC-CceEEEEHHHCccCcC
Confidence 02457899999999999999999999976 7999999999999765
|
| >1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A | Back alignment and structure |
|---|
Probab=98.64 E-value=7.2e-10 Score=144.73 Aligned_cols=83 Identities=18% Similarity=0.235 Sum_probs=38.5
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccC----CCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeec
Q 000176 1363 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL----SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438 (1924)
Q Consensus 1363 ~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~sel----sd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~ 1438 (1924)
.++++|+++.|+|+++.++|+||+|.++++|+||+|++ +|.|+.++.+.|++||.|+++|+++|+ ++||.||+|+
T Consensus 663 ~~~~vG~i~~G~V~~i~~fGaFV~l~~g~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~vd~-~grI~LS~k~ 741 (757)
T 1e3p_A 663 TSPEVGERILGSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDS-RGKLSLIPVI 741 (757)
T ss_dssp ----------CBEEECC-CSCEECCC---CCCCC-------------------CCSSCBCCCCCCCCCS-SCC-------
T ss_pred hhcccccEEEEEEEEccccEEEEEEcCCcEEEEEhHHhccccCCCcccCcccccCCCCEEEEEEEEECC-CCCEEEEEec
Confidence 35789999999999999999999999999999999999 999999999999999999999999998 9999999999
Q ss_pred ccccccch
Q 000176 1439 SDSRTASQ 1446 (1924)
Q Consensus 1439 ~~~~~~~~ 1446 (1924)
...+||..
T Consensus 742 ~~~~pw~~ 749 (757)
T 1e3p_A 742 EGEEAASD 749 (757)
T ss_dssp --------
T ss_pred CCCCchhh
Confidence 98887754
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.3e-06 Score=111.04 Aligned_cols=169 Identities=12% Similarity=0.018 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC---ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-----CHHHHHHH
Q 000176 1733 EAVVKVFQRALQYCDPKKVHLALLGLYERTE---QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-----QQEGVQAV 1804 (1924)
Q Consensus 1733 e~a~~vferAl~~~~~~~i~~~l~~i~~~~g---k~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-----~~~~A~~l 1804 (1924)
+.+...++.|....+. .++.++.+|...| ++++|...|+++....+.....|+.++.++... ++++|...
T Consensus 162 ~~a~~~~~~a~~~~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 162 DDVERICKAALNTTDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp HHHHHHHHHHTTTCTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 4455566666665554 8999999999999 999999999999999888999889999988754 89999999
Q ss_pred HHHHHHhCCCCChHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHH
Q 000176 1805 VQRALLSLPRHKHIKFISQTAIL-E--FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG-----DVDLIRGLFE 1876 (1924)
Q Consensus 1805 ~~ral~~~p~~~~~~~~~~~A~l-e--~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~g-----d~~~ar~lfe 1876 (1924)
|+++. |.+ ..++..+|.+ + ...+++++|..+|++++.. .+...+..++.++. .| ++++|..+|+
T Consensus 240 ~~~aa---~g~--~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 240 LEKIA---PGY--PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHHG---GGS--THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHHc---CCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 99998 555 4899999998 4 4678999999999999854 47889999998887 56 9999999999
Q ss_pred HHHhcCCCchhHHHHHHHHHHH-HHH---cCCHHHHHHHHHHHHH
Q 000176 1877 RAISLSLPPKKMKFLFKKYLEY-EKS---VGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1877 ral~~~~~pk~~k~lw~~yl~~-E~~---~G~~~~~~~v~~rAle 1917 (1924)
+++ .. .. ..+.....+ +.. ..|.+.+...|++|.+
T Consensus 312 ~Aa-~g----~~-~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 312 KAV-GR----EV-AADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp TTT-TT----CH-HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HHh-CC----CH-HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 988 22 22 122222233 222 2288888888888764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.63 E-value=7.4e-07 Score=106.24 Aligned_cols=164 Identities=6% Similarity=-0.058 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC-----
Q 000176 1715 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-------KVHLALLGLYERTEQNKLADELLYKMIKKFKHS----- 1782 (1924)
Q Consensus 1715 ~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-------~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~----- 1782 (1924)
..|...+......+ +.++|.+.|+++++..+.. ..+..++.+|...|++++|...|++++......
T Consensus 76 ~~l~~~~~~~~~~~--~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 76 KQFKDQVIMLCKQK--RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHhh--hHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 45666666667778 4589999999999876542 345567777888889999999999998765322
Q ss_pred -HHHHHHHHHHHHhc-CHHHHHHHHHHHH---HhCCCCCh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----
Q 000176 1783 -CKVWLRRVQRLLKQ-QQEGVQAVVQRAL---LSLPRHKH--IKFISQTAILEFKNGVADRGRSMFEGILSEYPK----- 1850 (1924)
Q Consensus 1783 -~~vw~~~a~~l~~~-~~~~A~~l~~ral---~~~p~~~~--~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk----- 1850 (1924)
..+|..+|..+... ++++|...|++|+ +..|.... +.++..+|.+++..|++++|...|++++...++
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 56888999999888 9999999999999 55555432 258889999999999999999999999876533
Q ss_pred -CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHh
Q 000176 1851 -RTDLWSIYLDQEIRLGDVDLI-RGLFERAIS 1880 (1924)
Q Consensus 1851 -~~dlw~~y~~le~k~gd~~~a-r~lferal~ 1880 (1924)
...+|...+..+.+.|++++| ...|++|+.
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 256788889999999999999 888998886
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=2.7e-07 Score=103.04 Aligned_cols=127 Identities=11% Similarity=-0.017 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCH----------------HHHHHHHHHHHhc-CHHHHHHHHHHHHHhC
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSC----------------KVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1812 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~----------------~vw~~~a~~l~~~-~~~~A~~l~~ral~~~ 1812 (1924)
..|..++..+...+++++|...|++++...+..+ .+|..++..++.. ++++|...|++++...
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 5577777888888888888888888888776665 8899999999988 9999999999999998
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHH
Q 000176 1813 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR-GLFERA 1878 (1924)
Q Consensus 1813 p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar-~lfera 1878 (1924)
|.. ..+|..+|.+++..|++++|...|++++...|.+..+|..+..++...++..++. ..|.++
T Consensus 119 p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 119 KNN--VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp TTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred ccc--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876 5899999999999999999999999999999999999999988888777666554 444443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=6.2e-07 Score=89.44 Aligned_cols=113 Identities=11% Similarity=0.004 Sum_probs=102.4
Q ss_pred CHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000176 1782 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1860 (1924)
Q Consensus 1782 ~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~ 1860 (1924)
....|+.++..+... ++++|...|++++...|.+ ..+|..+|.+++..|+++.|...|++++...|.+..+|..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN--HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 456889999999999 9999999999999999876 6899999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 000176 1861 QEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYE 1899 (1924)
Q Consensus 1861 le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E 1899 (1924)
.+...|+++.|+..|++++. ..|... ..|..+..++
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~--~~~~~~-~~~~~l~~~~ 116 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLK--HEANNP-QLKEGLQNME 116 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHT--TCTTCH-HHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH--cCCCCH-HHHHHHHHhh
Confidence 99999999999999999998 667666 5676665554
|
| >3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A | Back alignment and structure |
|---|
Probab=98.62 E-value=5.7e-08 Score=106.10 Aligned_cols=72 Identities=21% Similarity=0.384 Sum_probs=66.0
Q ss_pred cCCCcEEEEEEEEeecceEEEEEecC---------ceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEE
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIENT---------NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1525 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~~~---------~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~l 1525 (1924)
.+ ||+|.|+|++|.++|+||+|..- ++.|++|+|++++.+++++.+.|++||.|+|+|++ +++.|
T Consensus 56 p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~-----~~i~L 129 (179)
T 3m7n_A 56 VK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG-----DNLRL 129 (179)
T ss_dssp CT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE-----TTTEE
T ss_pred CC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC-----CeEEE
Confidence 36 99999999999999999999751 68999999999999999999999999999999998 89999
Q ss_pred ecccccc
Q 000176 1526 GMKSSYF 1532 (1924)
Q Consensus 1526 slK~s~~ 1532 (1924)
|+|...+
T Consensus 130 S~k~~~l 136 (179)
T 3m7n_A 130 STKEEEM 136 (179)
T ss_dssp ECCSTTC
T ss_pred EEecCCC
Confidence 9998544
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.2e-06 Score=104.37 Aligned_cols=176 Identities=11% Similarity=0.015 Sum_probs=138.0
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHH-HHHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Q 000176 1670 SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV-AYFNLENEYGNPPEEAVVKVFQRALQYCDP 1748 (1924)
Q Consensus 1670 ~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWi-ayl~le~~~g~~~~e~a~~vferAl~~~~~ 1748 (1924)
.+|.....|...+..+...+++++|.+.++++++..+...+......|. ....+....+ +.++|...|++|+.....
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~~~ 147 (293)
T 2qfc_A 70 SDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV--DYEYCILELKKLLNQQLT 147 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSS--CHHHHHHHHHHHHTTCCC
T ss_pred cchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhc
Confidence 3456667788888889999999999999999998766432222122232 3334444556 459999999999976432
Q ss_pred -------HHHHHHHHHHHHHhCChHHHHHHHHHHHHh---cCCCH----HHHHHHHHHHHhc-CHHHHHHHHHHHHHhCC
Q 000176 1749 -------KKVHLALLGLYERTEQNKLADELLYKMIKK---FKHSC----KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1813 (1924)
Q Consensus 1749 -------~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~---~~~~~----~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p 1813 (1924)
..+|..++.+|...|++++|...|++++.. .+... .+|++++..+... ++++|...|++|+...+
T Consensus 148 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 148 GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp SSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 268999999999999999999999999943 44432 6899999999999 99999999999998754
Q ss_pred CC----ChHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 000176 1814 RH----KHIKFISQTAILEFKNGVADRG-RSMFEGILSE 1847 (1924)
Q Consensus 1814 ~~----~~~~~~~~~A~le~~~g~~e~A-r~lfe~aL~~ 1847 (1924)
.. ....++...|.+++..|++++| ...|++++..
T Consensus 228 ~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 228 RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 31 1257899999999999999999 8889999864
|
| >1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ... | Back alignment and structure |
|---|
Probab=98.61 E-value=7.1e-08 Score=104.98 Aligned_cols=76 Identities=17% Similarity=0.268 Sum_probs=62.2
Q ss_pred ccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCc----------ccccCCCcEEEEEEEEEecCCC--
Q 000176 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI----------ETIYRAGEKVKVKILKVDKEKR-- 1521 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~----------~~~~~~Gd~Vk~~Vl~id~e~~-- 1521 (1924)
...+|++++|+|+++++||+||+|.+ .+||+|+|+|++.+.-+. .+.|++||.|+++|+++|.+.+
T Consensus 80 ~~~~Gev~~G~V~~v~~fG~FV~l~~--~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~~ 157 (171)
T 1y14_B 80 KPFKGEVVDGTVVSCSQHGFEVQVGP--MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSI 157 (171)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEETT--EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEETTEE
T ss_pred cCCCCCEEEEEEEEEecCEEEEEecC--eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEEcCCCCc
Confidence 34689999999999999999999964 999999999986533111 2679999999999999998874
Q ss_pred -eeEEecccccc
Q 000176 1522 -RISLGMKSSYF 1532 (1924)
Q Consensus 1522 -ri~lslK~s~~ 1532 (1924)
+|. |||+.+.
T Consensus 158 ~~ig-sm~~~~L 168 (171)
T 1y14_B 158 HAIG-SIKEDYL 168 (171)
T ss_dssp EEEE-ECCSTTC
T ss_pred EEEE-EcCCCCC
Confidence 555 7776544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.61 E-value=3.4e-07 Score=94.92 Aligned_cols=98 Identities=14% Similarity=0.074 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 000176 1781 HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYL 1859 (1924)
Q Consensus 1781 ~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~ 1859 (1924)
.....|+.++..++.. ++++|...|++++...|.+ ..+|..+|.+++..|++++|...|++++...|.+..+|..++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV--AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3444455555555555 5555555555555554443 345555555555555555555555555555555555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 000176 1860 DQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1860 ~le~k~gd~~~ar~lferal~ 1880 (1924)
..+...|+++.|...|++++.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 555555555555555555554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=2e-07 Score=95.56 Aligned_cols=93 Identities=6% Similarity=-0.050 Sum_probs=44.9
Q ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 000176 1786 WLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR 1864 (1924)
Q Consensus 1786 w~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k 1864 (1924)
|+..+..+++. ++++|...|+++++..|.+ ..+|..+|.++...|++++|...|++++...|++..+|..++..+..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPER--EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34444444444 4444444444444444443 34444444444444455555555555554455444444444444444
Q ss_pred cCCHHHHHHHHHHHHh
Q 000176 1865 LGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1865 ~gd~~~ar~lferal~ 1880 (1924)
.|++++|+..|++++.
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4555555555554444
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.5e-07 Score=95.83 Aligned_cols=111 Identities=11% Similarity=-0.061 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1825 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~---~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A 1825 (1924)
..|..++..+...+++++|.+.|++++...+.+ ..+|+.++..+... ++++|...|++++...|.+ ..+|..+|
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a 106 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD--VKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC--HHHHHHHH
Confidence 555566666666666666666666666555544 55566666666655 6666666666666665544 45666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000176 1826 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1862 (1924)
Q Consensus 1826 ~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le 1862 (1924)
.+++..|++++|+..|++++...|++.++|..+..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 6666666666666666666666666666665555443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.59 E-value=5.4e-07 Score=93.37 Aligned_cols=115 Identities=14% Similarity=-0.056 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000176 1749 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1827 (1924)
Q Consensus 1749 ~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~l 1827 (1924)
-..|..++..+...|++++|...|++++...+.+..+|+.++..+... ++++|...|++++...|.. ..+|..+|.+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS--VKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh--HHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999 9999999999999999886 6899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHc
Q 000176 1828 EFKNGVADRGRSMFEGILSEYPK-----RTDLWSIYLDQEIRL 1865 (1924)
Q Consensus 1828 e~~~g~~e~Ar~lfe~aL~~~Pk-----~~dlw~~y~~le~k~ 1865 (1924)
++..|++++|...|++++...|+ ...+|..+.....+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887 667777776665443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=1e-06 Score=89.53 Aligned_cols=119 Identities=13% Similarity=0.020 Sum_probs=106.6
Q ss_pred CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 000176 1781 HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYL 1859 (1924)
Q Consensus 1781 ~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~ 1859 (1924)
.....|..++..+... ++++|...|++++...|.. ..+|..+|.+++..|++++|...|++++...|.+..+|..++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN--AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 4567899999999999 9999999999999999876 589999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCC
Q 000176 1860 DQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGE 1904 (1924)
Q Consensus 1860 ~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~ 1904 (1924)
.++...|+++.|...|++++. ..|... ..|..+.......|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~--~~p~~~-~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALE--LDPDNE-TYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HSTTCH-HHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHh--cCccch-HHHHHHHHHHHHHhc
Confidence 999999999999999999999 666666 577777766666554
|
| >2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=6.1e-08 Score=108.23 Aligned_cols=76 Identities=17% Similarity=0.268 Sum_probs=64.1
Q ss_pred ccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCc----------ccccCCCcEEEEEEEEEecCCC--
Q 000176 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI----------ETIYRAGEKVKVKILKVDKEKR-- 1521 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~----------~~~~~~Gd~Vk~~Vl~id~e~~-- 1521 (1924)
...+|+++.|+|++|++||+||+|++ ++||+|+|+|++.+.-+. .+.|++||.|+++|+++|.+.+
T Consensus 80 ~p~vGev~~G~V~~vt~fG~FVelg~--~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~~~~~i 157 (215)
T 2b8k_G 80 KPFKGEVVDGTVVSCSQHGFEVQVGP--MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSI 157 (215)
T ss_dssp CCCTTEEEEEEEEEEETTEEEEECTT--SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEETTEE
T ss_pred ccCCCCEEEEEEEEEecceEEEEecC--cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEEEcCCCcc
Confidence 34799999999999999999999964 899999999987643222 2679999999999999998875
Q ss_pred -eeEEecccccc
Q 000176 1522 -RISLGMKSSYF 1532 (1924)
Q Consensus 1522 -ri~lslK~s~~ 1532 (1924)
+|. |||+.+.
T Consensus 158 ~~Ig-Smk~~~L 168 (215)
T 2b8k_G 158 HAIG-SIKEDYL 168 (215)
T ss_dssp EEEE-ECCSTTC
T ss_pred EEEE-EcCCCCC
Confidence 777 8888655
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=8.7e-08 Score=107.06 Aligned_cols=150 Identities=11% Similarity=-0.020 Sum_probs=116.8
Q ss_pred HHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh--------------HHHH
Q 000176 1757 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH--------------IKFI 1821 (1924)
Q Consensus 1757 ~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~--------------~~~~ 1821 (1924)
......+.+++|.+.|+.....-......|...+..++.. ++++|...|++++...|.... ..+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 3344456666666666655544445677899999999999 999999999999999887641 3799
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000176 1822 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1901 (1924)
Q Consensus 1822 ~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~ 1901 (1924)
..+|.+++..|++++|...|++++...|.+..+|..++..+...|+++.|...|++++. +.|... .+|..+......
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~-~~~~~l~~~~~~ 168 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNL-DIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcH-HHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 666666 577777766666
Q ss_pred cCCHHHHH
Q 000176 1902 VGEEERIE 1909 (1924)
Q Consensus 1902 ~G~~~~~~ 1909 (1924)
.++..++.
T Consensus 169 ~~~~~~~~ 176 (198)
T 2fbn_A 169 LKEARKKD 176 (198)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHH
Confidence 55554443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.58 E-value=9.8e-08 Score=121.71 Aligned_cols=129 Identities=10% Similarity=0.011 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCC
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHS---------------CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1813 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~---------------~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p 1813 (1924)
..|..++..|.+.+++++|...|++++...+.. ..+|++++..+++. ++++|...|++||...|
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 677888888999999999999999999888777 68999999999999 99999999999999998
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHh
Q 000176 1814 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR-GLFERAIS 1880 (1924)
Q Consensus 1814 ~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar-~lferal~ 1880 (1924)
.+ ..+|..+|..++..|++++|+..|+++++..|++..+|..++.++.+.++++++. .+|.+++.
T Consensus 349 ~~--~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 349 AN--EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp TC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cc--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 86 6899999999999999999999999999999999999999999999988887653 45555443
|
| >3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.58 E-value=5.9e-09 Score=139.64 Aligned_cols=82 Identities=15% Similarity=0.165 Sum_probs=0.9
Q ss_pred hhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcc-cCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeec
Q 000176 1360 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY-VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438 (1924)
Q Consensus 1360 ~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~-~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~ 1438 (1924)
+.+.++++|++|.|+|++|+++|+||.|+.+++|+||+|+|+|.| +.+|.+.|++||.|+|+|++||.+++||.||+|.
T Consensus 898 et~~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~ 977 (1030)
T 3psf_A 898 ESEKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLD 977 (1030)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred ccHHHhcCCCEEEEEEEEEccCeEEEEeCCCcEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEech
Confidence 455789999999999999999999999999999999999999998 8999999999999999999999999999999998
Q ss_pred ccc
Q 000176 1439 SDS 1441 (1924)
Q Consensus 1439 ~~~ 1441 (1924)
+..
T Consensus 978 ~dl 980 (1030)
T 3psf_A 978 HDV 980 (1030)
T ss_dssp ---
T ss_pred HHh
Confidence 664
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.6e-06 Score=102.77 Aligned_cols=221 Identities=10% Similarity=-0.019 Sum_probs=171.3
Q ss_pred HcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHh-C-
Q 000176 1687 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERT-E- 1763 (1924)
Q Consensus 1687 ~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~-g- 1763 (1924)
...-.++|.+.++++|...|.. ..+|.....+....+. ..+++.+.++++++.+|. ..+|.....++... +
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~-----ytaWn~R~~iL~~l~~-~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAH-----YTVWQYRFSLLTSLNK-SLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCS
T ss_pred hCCCCHHHHHHHHHHHHhCchh-----HHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCC
Confidence 3344578999999999876642 3589888777777774 268999999999999987 49999999999988 7
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHH--------HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC-
Q 000176 1764 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQE--------GVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV- 1833 (1924)
Q Consensus 1764 k~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~--------~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~- 1833 (1924)
+++++.+.+++++..++.+..+|....-.+.+. .++ ++.+.++++++..|.+ ..+|...+.+....+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N--~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRN--NSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHTTSTTC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcccc
Confidence 899999999999999999999999887766665 555 8999999999999988 4899999999988886
Q ss_pred ------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHhcC----C
Q 000176 1834 ------ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV--------------------DLIRGLFERAISLS----L 1883 (1924)
Q Consensus 1834 ------~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~--------------------~~ar~lferal~~~----~ 1883 (1924)
++++...+.+++..+|.+..+|+.+..++.+.|.. .........++... .
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 79999999999999999999999888887776654 22222222222211 0
Q ss_pred CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1884 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916 (1924)
Q Consensus 1884 ~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAl 1916 (1924)
.++.. ..+.-.++.....|+.++|..+|+...
T Consensus 298 ~~~s~-~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 298 PLPVP-LALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp CSCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 12223 456666666677899888888887764
|
| >1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=1.2e-07 Score=105.07 Aligned_cols=80 Identities=23% Similarity=0.380 Sum_probs=70.2
Q ss_pred cCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccC-----------CCCccCCCCcEEEEEEEEEeCCCC--
Q 000176 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE-----------SPEKEFPIGKLVAGRVLSVEPLSK-- 1430 (1924)
Q Consensus 1364 ~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~-----------~~~~~f~~G~~V~~kVl~vd~e~~-- 1430 (1924)
...+|+++.|+|++++++|+||+|++ .+|++|++++++.+.. ++...|++||.|+++|+++|.+.+
T Consensus 78 ~~~~Gev~~G~V~~v~~~G~fV~l~~-~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~p 156 (187)
T 1go3_E 78 IPEMYELIEGEVVDVVEFGSFVRLGP-LDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAERK 156 (187)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECSS-SEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC---
T ss_pred ccCCCCEEEEEEEEEeCcEEEEEEcC-ccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccCCC
Confidence 35689999999999999999999986 9999999999988764 678899999999999999998755
Q ss_pred ---EEEEEeeccccccc
Q 000176 1431 ---RVEVTLKTSDSRTA 1444 (1924)
Q Consensus 1431 ---ri~LSlk~~~~~~~ 1444 (1924)
+|.||++.....+.
T Consensus 157 ~~~~I~lS~k~~~LG~~ 173 (187)
T 1go3_E 157 RGSKIALTMRQPYLGKL 173 (187)
T ss_dssp --CEEEEECCSTTCEEH
T ss_pred CccEEEEEEcCCCCCcH
Confidence 99999998765543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=98.58 E-value=4.7e-08 Score=120.50 Aligned_cols=179 Identities=16% Similarity=0.092 Sum_probs=42.7
Q ss_pred CCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000176 1656 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1735 (1924)
Q Consensus 1656 ~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a 1735 (1924)
+..+|.+.|++. +.+.+|..++..+++.+++++|.+.|.++-.. ..|...++.....|.+ ++|
T Consensus 18 ~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika~D~----------~~y~~V~~~ae~~g~~--EeA 80 (449)
T 1b89_A 18 NLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDP----------SSYMEVVQAANTSGNW--EEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcCCCH----------HHHHHHHHHHHhCCCH--HHH
Confidence 366777777777 33469999999999999999999999876421 1344444445556744 777
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC
Q 000176 1736 VKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1814 (1924)
Q Consensus 1736 ~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~ 1814 (1924)
...++.+.+..++..+...++..|.+.|+++++.+.|+. .+...|...|..+... ++++|+.+|.++
T Consensus 81 i~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~------pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 81 VKYLQMARKKARESYVETELIFALAKTNRLAELEEFING------PNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ----------------------------CHHHHTTTTTC------C----------------CTTTHHHHHHHT------
T ss_pred HHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 777877777544445666666677777776666665542 2334666666666666 666666666655
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 000176 1815 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR 1872 (1924)
Q Consensus 1815 ~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar 1872 (1924)
..|..+|..+.+.|+++.|...|+++ .++..|...+......|+++.|.
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~ 197 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQ 197 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHH
Confidence 24666666666666666666666666 24555555544444444444443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.56 E-value=8.1e-08 Score=123.07 Aligned_cols=168 Identities=11% Similarity=0.024 Sum_probs=131.2
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 000176 1752 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1830 (1924)
Q Consensus 1752 ~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~ 1830 (1924)
|..++..|.+.|++++|.+.|+++++..+....+|..++..+.+. ++++|.+.|++|++..|.. ..+|..+|..++.
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY--IKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHH
Confidence 445566777889999999999999999999999999999999999 9999999999999998876 5899999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhcC---CC---ch--hHH
Q 000176 1831 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQ--EIRLGDVDLIRGLFE-----------RAISLS---LP---PK--KMK 1889 (1924)
Q Consensus 1831 ~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~l--e~k~gd~~~ar~lfe-----------ral~~~---~~---pk--~~k 1889 (1924)
.|++++|...|+++++..|++..+|..++.. +.+.|++++|..+|+ +++... .. +. -..
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl 166 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTI 166 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccccccH
Confidence 9999999999999999999998898888877 778899999999999 666521 00 11 011
Q ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHh
Q 000176 1890 FLFKKYLEYEKSVG--EEERIEYVKQKAMEYVES 1921 (1924)
Q Consensus 1890 ~lw~~yl~~E~~~G--~~~~~~~v~~rAle~v~~ 1921 (1924)
..+..++......+ ..+.+..++.+|.+.+..
T Consensus 167 ~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~ 200 (477)
T 1wao_1 167 SFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSK 200 (477)
T ss_dssp HHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcc
Confidence 34445555444433 466777889999888765
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.9e-06 Score=99.40 Aligned_cols=88 Identities=14% Similarity=0.140 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc-CCHH
Q 000176 1797 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK-----NGVADRGRSMFEGILSEYPKR-TDLWSIYLDQEIRL-GDVD 1869 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~-----~g~~e~Ar~lfe~aL~~~Pk~-~dlw~~y~~le~k~-gd~~ 1869 (1924)
....|+.+++||++..|...+-.+|..+|.+|.+ -|+.++|+.+|+++|+.+|+. .+.+..|++++... |+++
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4788999999999999997556799999999998 499999999999999999975 99999999999885 9999
Q ss_pred HHHHHHHHHHhcCCCch
Q 000176 1870 LIRGLFERAISLSLPPK 1886 (1924)
Q Consensus 1870 ~ar~lferal~~~~~pk 1886 (1924)
.++.+|++|+. .+|.
T Consensus 258 ~a~~~L~kAL~--a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALA--IDPE 272 (301)
T ss_dssp HHHHHHHHHHH--CCGG
T ss_pred HHHHHHHHHHc--CCCC
Confidence 99999999999 6665
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.56 E-value=1.6e-06 Score=102.75 Aligned_cols=202 Identities=11% Similarity=0.080 Sum_probs=153.1
Q ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 000176 1660 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVF 1739 (1924)
Q Consensus 1660 a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vf 1739 (1924)
+...|++++...+.+...+...+..+...|++++|.+++.+++...|. ...+..+...+.+++..+ +.+.|++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~---~~~lea~~l~vqi~L~~~--r~d~A~k~l 159 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEA---EGTTELLLLAIEVALLNN--NVSTASTIF 159 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS---TTHHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---cCcHHHHHHHHHHHHHCC--CHHHHHHHH
Confidence 678899988776677778888888899999999999999999865441 234568888889999999 669999999
Q ss_pred HHHHhcCC-----CHHHHHHHHHH--HHHhC--ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHH
Q 000176 1740 QRALQYCD-----PKKVHLALLGL--YERTE--QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1809 (1924)
Q Consensus 1740 erAl~~~~-----~~~i~~~l~~i--~~~~g--k~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral 1809 (1924)
+++.+..| ...+...++.. ....| ++.+|..+|+.+...|++.......|. .++++ ++++|+..++.++
T Consensus 160 ~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 160 DNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHH
Confidence 99988887 35555555543 33344 899999999999999886222222232 56677 9999999999877
Q ss_pred HhCCC--------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1810 LSLPR--------HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1810 ~~~p~--------~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
+..|. ..++.++.+.+.+.+..|+ .|..+++++.+..|++.-+.. +......|++++.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d-----------~~~k~~~Fd~~~~ 304 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH-----------HQEIDAKFDELVR 304 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH-----------HHHHHHHHHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH-----------HHHHHHHHHHHHH
Confidence 76432 2347888888888888887 889999999999999865422 2234466777776
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.3e-06 Score=104.03 Aligned_cols=126 Identities=8% Similarity=-0.035 Sum_probs=54.4
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCC---CC--ChHHHHH
Q 000176 1755 LLGLYERTEQNKLADELLYKMIKKFKHS------CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP---RH--KHIKFIS 1822 (1924)
Q Consensus 1755 l~~i~~~~gk~e~A~~~fe~~lk~~~~~------~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p---~~--~~~~~~~ 1822 (1924)
++.+|...+++++|...|++++...... ..+|..+|.++... ++++|...|++|++... .. ....++.
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 3344444444555555555554432111 22344444444444 55555555555443211 11 1123444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcC-CHHHHHHHHHHHHh
Q 000176 1823 QTAILEFKNGVADRGRSMFEGILSEYPKR------TDLWSIYLDQEIRLG-DVDLIRGLFERAIS 1880 (1924)
Q Consensus 1823 ~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~------~dlw~~y~~le~k~g-d~~~ar~lferal~ 1880 (1924)
.+|.+++..|++++|...|++++...++. ..+|...+..+.+.| ++++|...|++|+.
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 44445555555555555555554433221 334444444444444 23444444444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=6.1e-07 Score=93.91 Aligned_cols=119 Identities=15% Similarity=0.072 Sum_probs=106.3
Q ss_pred CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 000176 1780 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSI 1857 (1924)
Q Consensus 1780 ~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~-~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~ 1857 (1924)
+.....|+..+..++.. ++++|..+|++++...|.+. ...+|..+|..++..|++++|...|++++...|++..+|..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 56789999999999999 99999999999999988641 15899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000176 1858 YLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1901 (1924)
Q Consensus 1858 y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~ 1901 (1924)
++..+...|+++.|...|++++. +.|... .+|..+..+...
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~--~~p~~~-~~~~~l~~~~~~ 145 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS--LEPKNK-VFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH--HCSSCH-HHHHHHHHHHCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--cCCCcH-HHHHHHHHHHhh
Confidence 99999999999999999999999 667666 577777666543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-06 Score=89.83 Aligned_cols=112 Identities=7% Similarity=0.091 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh-HHHHHHHHH
Q 000176 1752 HLALLGLYERTEQNKLADELLYKMIKKFKHSC---KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-IKFISQTAI 1826 (1924)
Q Consensus 1752 ~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~---~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~-~~~~~~~A~ 1826 (1924)
++.++..+...|++++|...|+++++.+|.++ .+|+.++..+... ++++|...|++++...|.+.. ..++..+|.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 56667777788888888888888888777666 6788888888777 888888888888888776532 366777888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000176 1827 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1863 (1924)
Q Consensus 1827 le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~ 1863 (1924)
.++..|++++|+..|++++..+|+....+.....+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 8888888888888888888888877766655554443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.55 E-value=6.3e-07 Score=96.70 Aligned_cols=104 Identities=13% Similarity=0.095 Sum_probs=96.7
Q ss_pred CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 000176 1781 HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYL 1859 (1924)
Q Consensus 1781 ~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~ 1859 (1924)
.....|+.++..++.. ++++|...|++++...|.+ ..+|..+|.+++..|++++|...|++++...|++..+|..++
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN--PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3567899999999999 9999999999999999987 689999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1860 DQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1860 ~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
..+...|+++.|...|++++. +.|...
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~--~~p~~~ 113 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIE--AEGNGG 113 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HHSSSC
T ss_pred HHHHHccCHHHHHHHHHHHHH--hCCCch
Confidence 999999999999999999998 555444
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.7e-06 Score=87.10 Aligned_cols=112 Identities=17% Similarity=0.212 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000176 1783 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1861 (1924)
Q Consensus 1783 ~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~l 1861 (1924)
...|+.++..+... ++++|..+|++++...|.. ..+|..+|..++..|++++|..+|++++...|.+..+|..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 67899999999999 9999999999999998876 58999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 000176 1862 EIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYE 1899 (1924)
Q Consensus 1862 e~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E 1899 (1924)
+...|+++.|...|++++. ..|... ..+..+....
T Consensus 87 ~~~~~~~~~A~~~~~~~~~--~~~~~~-~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALE--LDPNNA-EAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHH--hCCCcH-HHHHHHHHHH
Confidence 9999999999999999998 566655 3454444443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.54 E-value=8.3e-08 Score=122.38 Aligned_cols=149 Identities=9% Similarity=-0.000 Sum_probs=120.7
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh-------------HHHHHHHHHHHH
Q 000176 1764 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-------------IKFISQTAILEF 1829 (1924)
Q Consensus 1764 k~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~-------------~~~~~~~A~le~ 1829 (1924)
++++|.+.|+.++...+.....|..++..+++. ++++|...|++|++..|.... ..+|..+|.+++
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555556678899999999999 999999999999999988631 589999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 000176 1830 KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIE 1909 (1924)
Q Consensus 1830 ~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~ 1909 (1924)
+.|++++|...|+++|..+|++..+|+.++..+...|+++.|+..|++|+. +.|... ..|..+..+....|+.+.+.
T Consensus 329 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~-~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNK-AARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 777776 57777777777777766554
Q ss_pred -HHHHHH
Q 000176 1910 -YVKQKA 1915 (1924)
Q Consensus 1910 -~v~~rA 1915 (1924)
..|.++
T Consensus 406 ~~~~~~~ 412 (457)
T 1kt0_A 406 RRIYANM 412 (457)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 334433
|
| >2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.3e-07 Score=103.18 Aligned_cols=75 Identities=16% Similarity=0.341 Sum_probs=62.2
Q ss_pred cCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccC------------cccccCCCcEEEEEEEEEecCCC-
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN------------IETIYRAGEKVKVKILKVDKEKR- 1521 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~------------~~~~~~~Gd~Vk~~Vl~id~e~~- 1521 (1924)
-.+|+++.|+|+++++||+||+|. .++||+|+|+|++.+.-+ -...|++||.|+++|+++|.+.+
T Consensus 79 ~~~Gev~~G~V~~v~~fG~fV~l~--~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~ 156 (172)
T 2c35_B 79 PFKGEVVDAVVTQVNKVGLFTEIG--PMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKND 156 (172)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEET--TEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEETTE
T ss_pred CCCCCEEEEEEEEEeCCEEEEEEC--CEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEcCCCC
Confidence 358999999999999999999995 577999999998653311 14579999999999999998876
Q ss_pred --eeEEecccccc
Q 000176 1522 --RISLGMKSSYF 1532 (1924)
Q Consensus 1522 --ri~lslK~s~~ 1532 (1924)
+|. |||+.+.
T Consensus 157 ~~~ig-sm~~~~L 168 (172)
T 2c35_B 157 IFAIG-SLMDDYL 168 (172)
T ss_dssp EEEEE-ECCSTTC
T ss_pred cEEEE-EecCCCC
Confidence 676 8887554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.53 E-value=9.2e-07 Score=91.36 Aligned_cols=106 Identities=12% Similarity=0.030 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh-----HHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-----IKFISQ 1823 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~-----~~~~~~ 1823 (1924)
..|..+++.|.+.|++++|.+.|++++...|.+..+|..++..++.. ++++|...|+++++..|.... ..+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 35667788888888888888888888888888888888888888888 888888888888877664321 246777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000176 1824 TAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1856 (1924)
Q Consensus 1824 ~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~ 1856 (1924)
+|.++...|++++|...|+++|...|+ .++..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHH
Confidence 777788888888888888888877765 34433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=5.4e-07 Score=92.30 Aligned_cols=102 Identities=10% Similarity=-0.006 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
..|+.++..+.+.|++++|...|+++++..|.+..+|+.++..+... ++++|...|++++...|.+ ..+|..+|.++
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~--~~~~~~la~~~ 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD--IAVHAALAVSH 95 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Confidence 45888999999999999999999999999999999999999999999 9999999999999999987 58999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHH
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTD 1853 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~d 1853 (1924)
...|++++|+..|+++++..|...+
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-------
T ss_pred HHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999999997654
|
| >4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-08 Score=132.25 Aligned_cols=81 Identities=22% Similarity=0.359 Sum_probs=0.0
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeeccccc
Q 000176 1363 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1442 (1924)
Q Consensus 1363 ~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~ 1442 (1924)
.++++|+++.|+|+++.++|+||+|.++++|+||+|+++|.++.++.+.|++||.|+++|+++|+ ++||.||+|.....
T Consensus 633 ~~~~vG~v~~G~V~~I~~fGaFVel~~g~eGLvHiSels~~rv~~~~d~~kvGD~V~VkVi~iD~-~grI~LS~K~~~~~ 711 (726)
T 4aid_A 633 DEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFDD-RGKTKLSMKVVDQE 711 (726)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhcCCcEEEEEEEEEeccEEEEEECCCcEEEEEHHHcCcccccCccccCCCCCEEEEEEEEECC-CCcEEEEEeecccC
Confidence 56899999999999999999999999999999999999999999999999999999999999997 89999999998776
Q ss_pred cc
Q 000176 1443 TA 1444 (1924)
Q Consensus 1443 ~~ 1444 (1924)
++
T Consensus 712 ~G 713 (726)
T 4aid_A 712 TG 713 (726)
T ss_dssp --
T ss_pred cc
Confidence 54
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.2e-07 Score=115.75 Aligned_cols=146 Identities=10% Similarity=0.000 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000176 1715 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL 1794 (1924)
Q Consensus 1715 ~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~ 1794 (1924)
..|....+.....+++ +.|...|++|++..+....|.. .+++.++...+ ...+|++++..++
T Consensus 180 ~~~~~~g~~~~~~g~~--~~A~~~y~~Al~~~p~~~~~~~-------~~~~~~~~~~l---------~~~~~~nla~~~~ 241 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKL--EEAMQQYEMAIAYMGDDFMFQL-------YGKYQDMALAV---------KNPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHTCSSSCC--HHHHHHHHHHHHHSCHHHHHTC-------CHHHHHHHHHH---------HTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCH--HHHHHHHHHHHHHhccchhhhh-------cccHHHHHHHH---------HHHHHHHHHHHHH
Confidence 5677777777777855 9999999999998876543221 22222322221 1248899999999
Q ss_pred hc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHH
Q 000176 1795 KQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI-RLGDVDLIR 1872 (1924)
Q Consensus 1795 ~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~-k~gd~~~ar 1872 (1924)
+. ++++|...|+++|...|.+ ..+|..+|..++..|++++|+..|+++++..|.+..+|..+..+.. ..+..+.++
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~--~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKN--PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88 9999999999999998876 5899999999999999999999999999999999889888887744 456778888
Q ss_pred HHHHHHHh
Q 000176 1873 GLFERAIS 1880 (1924)
Q Consensus 1873 ~lferal~ 1880 (1924)
.+|.+++.
T Consensus 320 ~~~~~~l~ 327 (338)
T 2if4_A 320 EMYKGIFK 327 (338)
T ss_dssp --------
T ss_pred HHHHHhhC
Confidence 99999887
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.6e-06 Score=103.24 Aligned_cols=167 Identities=11% Similarity=0.030 Sum_probs=129.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHhcCCC-------HHH
Q 000176 1680 KYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVA-YFNLENEYGNPPEEAVVKVFQRALQYCDP-------KKV 1751 (1924)
Q Consensus 1680 ~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWia-yl~le~~~g~~~~e~a~~vferAl~~~~~-------~~i 1751 (1924)
..+..+...+++++|...++++++..+...+......|.. ...+....+ +.+.|...|++|+..... ..+
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV--DYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHccc--CHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 3466678899999999999999986554333222222433 344444445 459999999999985432 157
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC----hHH
Q 000176 1752 HLALLGLYERTEQNKLADELLYKMIKKFK-------HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK----HIK 1819 (1924)
Q Consensus 1752 ~~~l~~i~~~~gk~e~A~~~fe~~lk~~~-------~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~----~~~ 1819 (1924)
|..++.+|...|++++|...|+++++.+. ....+|++++..+... ++++|...|++|++..+... -..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 99999999999999999999999996432 2355889999999999 99999999999998764431 257
Q ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHhC
Q 000176 1820 FISQTAILEFKNGV-ADRGRSMFEGILSEY 1848 (1924)
Q Consensus 1820 ~~~~~A~le~~~g~-~e~Ar~lfe~aL~~~ 1848 (1924)
+|...|..++..|+ +++|...|++++...
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 89999999999994 699999999998653
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1e-06 Score=89.66 Aligned_cols=113 Identities=10% Similarity=-0.016 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC--h---HHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK--H---IKFISQ 1823 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~--~---~~~~~~ 1823 (1924)
..|..++.++...+++++|...|++++...+.+..+|+.++..+... ++++|...|++++...|... + ..+|..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45777777777788888888888888877777777888888777777 88888888888877765431 1 467777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000176 1824 TAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1863 (1924)
Q Consensus 1824 ~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~ 1863 (1924)
+|..++..|+++.|...|++++...| +.++|..+..+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 77777788888888888888887777 4666666655544
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.49 E-value=7.4e-07 Score=95.92 Aligned_cols=112 Identities=9% Similarity=-0.059 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHh------------------cCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKK------------------FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1810 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~------------------~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~ 1810 (1924)
..|...++.+.+.|++++|...|++++.. .+....+|++++..++.. ++++|...|++++.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 56777888888888888888888888876 444556777777777777 77777777777777
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHH
Q 000176 1811 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT-DLWSIYLDQEI 1863 (1924)
Q Consensus 1811 ~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~-dlw~~y~~le~ 1863 (1924)
..|.+ ..+|...|..++..|++++|...|++++...|++. .++..+..+..
T Consensus 92 ~~p~~--~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 92 REETN--EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred cCCcc--hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 77765 57777777777777777777777777777777776 45555544443
|
| >2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.5e-07 Score=107.54 Aligned_cols=77 Identities=26% Similarity=0.468 Sum_probs=68.4
Q ss_pred ccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcc----cccCcccccCCCcEEEEEEEEEecCCCeeEEeccc
Q 000176 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED----HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~----~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~ 1529 (1924)
..++||+|.|+|+++.++|+||.|+. ...|++|+|++++. +..++.+.|++||.|.|+|++++. .+++.||+|.
T Consensus 63 ~p~~GDiV~G~V~~v~~~~~~V~I~~-~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~-~~~i~LS~k~ 140 (235)
T 2z0s_A 63 VPQAGDVVIGLIQSVGIMNWFVDINS-PYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDK-TRSPLLTVQG 140 (235)
T ss_dssp CCCTTCCEEEEEEEECSSEEEEECSS-SSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECT-TSCEEEECCS
T ss_pred CCCCCCEEEEEEEEEeCCeEEEEeCC-CeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECC-CCcEEEEEec
Confidence 46899999999999999999999965 79999999999873 456788899999999999999995 5699999988
Q ss_pred ccc
Q 000176 1530 SYF 1532 (1924)
Q Consensus 1530 s~~ 1532 (1924)
..+
T Consensus 141 ~~l 143 (235)
T 2z0s_A 141 EGL 143 (235)
T ss_dssp SSC
T ss_pred ccC
Confidence 655
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.46 E-value=8.7e-07 Score=109.52 Aligned_cols=137 Identities=14% Similarity=-0.027 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000176 1715 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL 1794 (1924)
Q Consensus 1715 ~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~ 1794 (1924)
..|....+.....+ +.++|...|++|++..+... +...++...+..+....+|++++..++
T Consensus 224 ~~~~~~g~~~~~~g--~~~~Ai~~y~kAl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQ--NWEMAIKKYTKVLRYVEGSR-----------------AAAEDADGAKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHH-----------------HHSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CHHHHHHHHHHHHHHhhcCc-----------------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777 44888888888876533210 001122222234456788999999998
Q ss_pred hc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 000176 1795 KQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR 1872 (1924)
Q Consensus 1795 ~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar 1872 (1924)
+. ++++|...|++|++..|.+ ..+|..+|..++..|++++|+..|+++++..|.+..+|..++.++.+.++.+++.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSN--TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88 9999999999999988876 5889999999999999999999999999999999999998888888777766554
|
| >3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A | Back alignment and structure |
|---|
Probab=98.45 E-value=2.1e-08 Score=130.69 Aligned_cols=83 Identities=19% Similarity=0.371 Sum_probs=0.0
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeeccccc
Q 000176 1363 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1442 (1924)
Q Consensus 1363 ~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~ 1442 (1924)
.++++|+++.|+|+++.++|+||+|.++++|+||+|+++|.|+.++.+.|++||.|+++|+++|+ ++||.||+|.....
T Consensus 623 ~~~~vG~i~~G~V~~i~~fGaFVel~~g~eGLvHiSel~~~~v~~~~~~~~vGd~V~VkVi~vd~-~grI~LS~k~~~~~ 701 (723)
T 3cdi_A 623 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQ 701 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhcCcEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCccccCcccccCCCCEEEEEEEEECC-CCcEEEEEEeccCC
Confidence 46789999999999999999999999999999999999999999999999999999999999997 99999999988766
Q ss_pred ccch
Q 000176 1443 TASQ 1446 (1924)
Q Consensus 1443 ~~~~ 1446 (1924)
|+.+
T Consensus 702 ~g~~ 705 (723)
T 3cdi_A 702 SQPA 705 (723)
T ss_dssp ----
T ss_pred CCcc
Confidence 5443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=2.2e-06 Score=111.70 Aligned_cols=173 Identities=12% Similarity=0.046 Sum_probs=140.1
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMAD----------VEKARSIAERALQTINIREENEKLNIWVAYFNLENE 1726 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e----------~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~ 1726 (1924)
.++|.+.|++++..+|+++.+|..-.......+. +++|.+.++++++..|.. ..+|.....+...
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~-----y~aW~hR~w~l~~ 119 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS-----YGTWHHRCWLLSR 119 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHH
Confidence 7788999999999999999999998888877776 888889999998776643 2578887777777
Q ss_pred cCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhC-ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc--------
Q 000176 1727 YGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTE-QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-------- 1796 (1924)
Q Consensus 1727 ~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~g-k~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-------- 1796 (1924)
++.++.+++.+.+++|++..+. ...|.....++...+ .++++.+.++++++..+.+..+|...+..+...
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 7733337888888999888876 488888888888888 788888888888888888888888888777651
Q ss_pred -------CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHH
Q 000176 1797 -------QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1836 (1924)
Q Consensus 1797 -------~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~ 1836 (1924)
.+++|.+.+.+|+...|.+. .+|..++.++.+.+.+++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~--saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQ--SAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCS--HHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCc--cHHHHHHHHHhcCCCccc
Confidence 46888888888888888875 788888887777776554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=98.45 E-value=1.7e-07 Score=115.60 Aligned_cols=230 Identities=10% Similarity=0.011 Sum_probs=122.4
Q ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcc-h---------------hhH-----
Q 000176 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE-E---------------NEK----- 1713 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~e-e---------------~ek----- 1713 (1924)
++.++|.+.|.++ .++..|...+..+.+.|++++|+..++.+.+..+... + .+.
T Consensus 46 g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~p 120 (449)
T 1b89_A 46 GMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGP 120 (449)
T ss_dssp --------------------------------------------------------------------CHHHHTTTTTCC
T ss_pred CCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCC
Confidence 3477777777663 3455777777777778888888887777776432100 0 000
Q ss_pred -HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000176 1714 -LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1792 (1924)
Q Consensus 1714 -l~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~ 1792 (1924)
...|...++.....|.+ ++|...|.++ ..|..++..+.+.|++++|.+.|.++ .++..|...+..
T Consensus 121 n~~a~~~IGd~~~~~g~y--eeA~~~Y~~a-------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~a 186 (449)
T 1b89_A 121 NNAHIQQVGDRCYDEKMY--DAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFA 186 (449)
T ss_dssp ----------------CT--TTHHHHHHHT-------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCH--HHHHHHHHHh-------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHH
Confidence 02444444444455544 6666666665 46788888888888888888888888 377888888888
Q ss_pred HHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHH
Q 000176 1793 LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL--GDVD 1869 (1924)
Q Consensus 1793 l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~--gd~~ 1869 (1924)
+... +++.|...... |.. |++-......+|.+.|.+++|..+|+.+|...+....+|..++.++.+. +...
T Consensus 187 Cv~~~ef~lA~~~~l~-L~~-----~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ 260 (449)
T 1b89_A 187 CVDGKEFRLAQMCGLH-IVV-----HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMR 260 (449)
T ss_dssp HHHTTCHHHHHHTTTT-TTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCcHHHHHHHHHH-HHh-----CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence 8888 88888554443 222 2344445777888999999999999999999999999999999988865 3555
Q ss_pred HHHHHHHHHHhcCCCc-----hhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000176 1870 LIRGLFERAISLSLPP-----KKMKFLFKKYLEYEKSVGEEERIEYVK 1912 (1924)
Q Consensus 1870 ~ar~lferal~~~~~p-----k~~k~lw~~yl~~E~~~G~~~~~~~v~ 1912 (1924)
....+|...+. +|+ .++ .+|..+.-+...+++++.|....
T Consensus 261 ehl~~~~~~in--i~k~~~~~~~~-~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 261 EHLELFWSRVN--IPKVLRAAEQA-HLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHSTTSC--HHHHHHHHHTT-TCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhc--CcHHHHHHHHH-HHHHHHHHHHHhhchHHHHHHHH
Confidence 66667766554 666 566 68999999999999998765443
|
| >4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E | Back alignment and structure |
|---|
Probab=98.44 E-value=4.8e-07 Score=99.43 Aligned_cols=79 Identities=27% Similarity=0.363 Sum_probs=67.4
Q ss_pred cCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCccc-----------CCCCccCCCCcEEEEEEEEEeCC----
Q 000176 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-----------ESPEKEFPIGKLVAGRVLSVEPL---- 1428 (1924)
Q Consensus 1364 ~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~-----------~~~~~~f~~G~~V~~kVl~vd~e---- 1428 (1924)
...+|+++.|.|++++++|+||++++ .+|++|++++++++. ++....|++||.|++||+++|.+
T Consensus 78 ~p~~Gev~~G~V~~v~~~G~fv~l~~-~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~~~~~~~ 156 (180)
T 4ayb_E 78 VPVVQEVVEGEVLQVDNYGVFVNLGP-MDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVTGR 156 (180)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECSS-SEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEECC-----
T ss_pred eccCCCEEEEEEeeeccceEEEEECC-ccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEeCCCCcc
Confidence 35689999999999999999999984 899999999999875 46777899999999999999864
Q ss_pred CCEEEEEeecccccc
Q 000176 1429 SKRVEVTLKTSDSRT 1443 (1924)
Q Consensus 1429 ~~ri~LSlk~~~~~~ 1443 (1924)
..||.||+|+.-..+
T Consensus 157 ~~rI~ls~k~~gLG~ 171 (180)
T 4ayb_E 157 LPRIALTMRQPYLGK 171 (180)
T ss_dssp --CEEEECCSTTCEE
T ss_pred cCcEEEEcCCCCCCC
Confidence 458999999865544
|
| >2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 | Back alignment and structure |
|---|
Probab=98.43 E-value=3.4e-07 Score=102.13 Aligned_cols=78 Identities=13% Similarity=0.179 Sum_probs=71.3
Q ss_pred ccCCCCEEEEEEEEEecCeEEEEEC--------CCeEEEecCCccCccccc--CcccCCCCCCEEEEEEEEeeCCCCeEE
Q 000176 758 HIHPNSVVHGYVCNIIETGCFVRFL--------GRLTGFAPRSKAVDGQRA--DLSKTYYVGQSVRSNILDVNSETGRIT 827 (1924)
Q Consensus 758 ~~~~G~~~~G~V~~i~~~G~fV~f~--------~~l~Glv~~s~~s~~~~~--~~~~~f~~Gq~V~~~V~~id~~~~r~~ 827 (1924)
..++|+++.|.|++|+++|+||++. .++.|++|++++++.+.. ++.+.|++||.|.|+|++++.+++++.
T Consensus 78 ~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i~ 157 (209)
T 2nn6_I 78 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYL 157 (209)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEEE
T ss_pred CCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeEE
Confidence 4678999999999999999999974 578999999999988887 899999999999999999998888999
Q ss_pred Eeeccccc
Q 000176 828 LSLKQSCC 835 (1924)
Q Consensus 828 lSlk~~~~ 835 (1924)
||+|....
T Consensus 158 LS~k~~~l 165 (209)
T 2nn6_I 158 LTTAENEL 165 (209)
T ss_dssp EECCSSSC
T ss_pred EEEecCCC
Confidence 99998754
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=3.9e-06 Score=109.43 Aligned_cols=158 Identities=11% Similarity=0.050 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCC----------hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc---C
Q 000176 1732 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQ----------NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ---Q 1797 (1924)
Q Consensus 1732 ~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk----------~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~---~ 1797 (1924)
.++|.+.+++|+..+|.. .+|.....++...++ +++|.+.|++++..+|.+..+|...+-.+.+. +
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 478999999999999984 999999999999888 99999999999999999999999998888776 4
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------
Q 000176 1798 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG-VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL----------- 1865 (1924)
Q Consensus 1798 ~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g-~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~----------- 1865 (1924)
+++|.+.+.+|++..|.+ ..+|...+.+....| .++++.+.+++++..+|.+..+|.....++.+.
T Consensus 125 ~~~el~~~~k~l~~d~~N--~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEADERN--FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhhcccc--ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 599999999999999988 479999999999999 899999999999999999999999988887774
Q ss_pred ---CCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000176 1866 ---GDVDLIRGLFERAISLSLPPKKMKFLFKK 1894 (1924)
Q Consensus 1866 ---gd~~~ar~lferal~~~~~pk~~k~lw~~ 1894 (1924)
+.++++.+.+.+|+. ..|... ..|.-
T Consensus 203 ~~~~~~~eel~~~~~ai~--~~P~~~-saW~y 231 (567)
T 1dce_A 203 LPENVLLKELELVQNAFF--TDPNDQ-SAWFY 231 (567)
T ss_dssp SCHHHHHHHHHHHHHHHH--HCSSCS-HHHHH
T ss_pred ccHHHHHHHHHHHHHHHh--hCCCCc-cHHHH
Confidence 456889999999998 555554 35543
|
| >2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C | Back alignment and structure |
|---|
Probab=98.40 E-value=3.1e-07 Score=105.32 Aligned_cols=77 Identities=23% Similarity=0.370 Sum_probs=69.8
Q ss_pred ccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccc---cCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV---DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~---~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
..++||+|.|+|+++.++|+||+|.. ...|++|+|++++.+. .++.+.|++||.|.|+|++++. .+++.||+|..
T Consensus 71 ~p~~GDiV~G~V~~v~~~ga~VdI~~-~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~-~~~i~LS~r~~ 148 (251)
T 2je6_I 71 YPKINDIVIGLVEDVEIYGWVVDIKA-PYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDR-SIDPVLSVKGK 148 (251)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECSS-SSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEET-TEEEEEECCST
T ss_pred CCCCCCEEEEEEEEEeCceEEEEcCC-CeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECC-CCcEEEEEccc
Confidence 45899999999999999999999975 7999999999998777 7788999999999999999995 47999999986
Q ss_pred cc
Q 000176 1531 YF 1532 (1924)
Q Consensus 1531 ~~ 1532 (1924)
.+
T Consensus 149 ~l 150 (251)
T 2je6_I 149 DL 150 (251)
T ss_dssp TC
T ss_pred cC
Confidence 55
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.40 E-value=9.5e-07 Score=87.27 Aligned_cols=98 Identities=9% Similarity=0.042 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 000176 1781 HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK--RTDLWSI 1857 (1924)
Q Consensus 1781 ~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk--~~dlw~~ 1857 (1924)
.+..+|+.++..+... ++++|...|+++++..|.. ..+|..+|.+++..|++++|...|++++...|. ...+|..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE--SKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 4455566666666666 6666666666666666554 356666666666666666666666666666666 6666666
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHh
Q 000176 1858 YLDQEIRL-GDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1858 y~~le~k~-gd~~~ar~lferal~ 1880 (1924)
++..+.+. |++++|...|++++.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhh
Confidence 66666666 666666666666665
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.39 E-value=4.1e-06 Score=92.85 Aligned_cols=150 Identities=10% Similarity=-0.036 Sum_probs=111.7
Q ss_pred CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHhc-CHHHHH
Q 000176 1731 PEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFK------HSCKVWLRRVQRLLKQ-QQEGVQ 1802 (1924)
Q Consensus 1731 ~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~------~~~~vw~~~a~~l~~~-~~~~A~ 1802 (1924)
+.+.|++.++........ ..+|..++.+|...|++++|...|++++..+. ....+|..++..+... ++++|.
T Consensus 7 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 86 (203)
T 3gw4_A 7 DYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAAR 86 (203)
T ss_dssp CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 347777755544442212 37888889999999999999999999888542 3356778888888888 999999
Q ss_pred HHHHHHHHh---CCCC--ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHH
Q 000176 1803 AVVQRALLS---LPRH--KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK--R----TDLWSIYLDQEIRLGDVDLI 1871 (1924)
Q Consensus 1803 ~l~~ral~~---~p~~--~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk--~----~dlw~~y~~le~k~gd~~~a 1871 (1924)
..|++++.. .+.. ....++..+|..++..|++++|+..|++++...+. . ..++..++..+...|++++|
T Consensus 87 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 166 (203)
T 3gw4_A 87 RCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEA 166 (203)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHH
Confidence 999998887 3322 22456888888888889999999999998865422 1 12457778888888999999
Q ss_pred HHHHHHHHh
Q 000176 1872 RGLFERAIS 1880 (1924)
Q Consensus 1872 r~lferal~ 1880 (1924)
+..|++++.
T Consensus 167 ~~~~~~al~ 175 (203)
T 3gw4_A 167 QQHWLRARD 175 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988887
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.38 E-value=5.3e-06 Score=84.76 Aligned_cols=102 Identities=10% Similarity=0.017 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 000176 1785 VWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR---TDLWSIYL 1859 (1924)
Q Consensus 1785 vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~-~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~---~dlw~~y~ 1859 (1924)
.|+..+..++.. ++++|...|++++...|.+. ...+|..+|..++..|++++|...|++++..+|++ .++|..++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 467888888888 99999999999999999874 12689999999999999999999999999999998 88899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1860 DQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1860 ~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
..+...|+++.|+..|++++. ..|...
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~--~~p~~~ 110 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVAT--QYPGSD 110 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HSTTSH
T ss_pred HHHHHcCCHHHHHHHHHHHHH--HCCCCh
Confidence 999999999999999999998 555554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.4e-06 Score=85.93 Aligned_cols=102 Identities=12% Similarity=-0.051 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
..|..++.++...+++++|...|++++...+....+|..++..+... ++++|...|+++++..|...+..+|..+|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999 99999999999999998822368999999999
Q ss_pred HHc-CCHHHHHHHHHHHHHhCCCC
Q 000176 1829 FKN-GVADRGRSMFEGILSEYPKR 1851 (1924)
Q Consensus 1829 ~~~-g~~e~Ar~lfe~aL~~~Pk~ 1851 (1924)
... |++++|...|++++...|..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCC
Confidence 999 99999999999999998864
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.4e-06 Score=92.61 Aligned_cols=162 Identities=10% Similarity=0.039 Sum_probs=118.4
Q ss_pred HHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCC----ChHHHHHHHHHHHHHcCCH
Q 000176 1760 ERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH----KHIKFISQTAILEFKNGVA 1834 (1924)
Q Consensus 1760 ~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~----~~~~~~~~~A~le~~~g~~ 1834 (1924)
...|++++|.+.++.+.........+|..++..+... ++++|...|++++...... ....++..+|.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 3568888888866555443345678888999888888 9999999999998854322 1246788889999999999
Q ss_pred HHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchhHHHHHHHHHHHHHHcCC
Q 000176 1835 DRGRSMFEGILSE---YPKR----TDLWSIYLDQEIRLGDVDLIRGLFERAISL---SLPPKKMKFLFKKYLEYEKSVGE 1904 (1924)
Q Consensus 1835 e~Ar~lfe~aL~~---~Pk~----~dlw~~y~~le~k~gd~~~ar~lferal~~---~~~pk~~k~lw~~yl~~E~~~G~ 1904 (1924)
++|...|++++.. .++. ..+|..++..+...|++++|+..|++++.. ...+...-..+..........|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 9999999999887 4533 345778888888999999999999998862 11111111335566667778899
Q ss_pred HHHHHHHHHHHHHHHHh
Q 000176 1905 EERIEYVKQKAMEYVES 1921 (1924)
Q Consensus 1905 ~~~~~~v~~rAle~v~~ 1921 (1924)
.+.+...+++|++..+.
T Consensus 163 ~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 163 LLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988765
|
| >3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.8e-07 Score=101.68 Aligned_cols=76 Identities=21% Similarity=0.330 Sum_probs=63.6
Q ss_pred ccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCc----------ccccCCCcEEEEEEEEEecCC---
Q 000176 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI----------ETIYRAGEKVKVKILKVDKEK--- 1520 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~----------~~~~~~Gd~Vk~~Vl~id~e~--- 1520 (1924)
...+|++++|+|+++++||+||+|+ .++||+|+|+|++.+.-+. ...|++||.|+++|+++|.+.
T Consensus 81 ~p~~Gev~~G~V~~v~~fG~FV~l~--~~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~~~~ 158 (172)
T 3h0g_G 81 RPFRGEVVDAIVTTVNKMGFFANIG--PLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDATEI 158 (172)
T ss_dssp CCCTTCEEECCCCEEETTEEECCBT--TBCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESSSCE
T ss_pred ccCCCCEEEEEEEEEEcceEEEEeC--CeEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEEECCCCCc
Confidence 4568999999999999999999996 4789999999987644332 468999999999999999987
Q ss_pred CeeEEecccccc
Q 000176 1521 RRISLGMKSSYF 1532 (1924)
Q Consensus 1521 ~ri~lslK~s~~ 1532 (1924)
.+|. |||+.|.
T Consensus 159 ~~Ig-tm~~~~L 169 (172)
T 3h0g_G 159 FAIA-TMKEDYL 169 (172)
T ss_dssp EEEE-ECCSTTC
T ss_pred eEEE-EcCCCCC
Confidence 4666 8887654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.35 E-value=4.5e-06 Score=89.69 Aligned_cols=115 Identities=11% Similarity=0.065 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC--------CC--------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1783 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL--------PR--------HKHIKFISQTAILEFKNGVADRGRSMFEGIL 1845 (1924)
Q Consensus 1783 ~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~--------p~--------~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL 1845 (1924)
...|...|..+++. ++++|...|++|+..+ |. .....+|..+|..+++.|++++|...|+++|
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 56788889999999 9999999999999982 21 1235799999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 000176 1846 SEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYE 1899 (1924)
Q Consensus 1846 ~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E 1899 (1924)
...|.+..+|..++..+...|+++.|...|++++. +.|.....++..+....
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 77776644555544443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.34 E-value=3.6e-06 Score=86.91 Aligned_cols=97 Identities=16% Similarity=0.089 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------H
Q 000176 1782 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT-------D 1853 (1924)
Q Consensus 1782 ~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~-------d 1853 (1924)
....|..+|..++++ ++++|...|++|+...|.. ..+|...|..++..|++++|...|++++...|+.. .
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~--~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN--ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 355788899999999 9999999999999999987 58999999999999999999999999999877542 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1854 LWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1854 lw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
+|...+..+...|+++.|...|++++.
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 677788888999999999999999998
|
| >2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=7.3e-07 Score=99.59 Aligned_cols=77 Identities=9% Similarity=0.068 Sum_probs=65.2
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCC----------ccCCCCcEEEEEEEEEeCCCC---E
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE----------KEFPIGKLVAGRVLSVEPLSK---R 1431 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~----------~~f~~G~~V~~kVl~vd~e~~---r 1431 (1924)
.++|+++.|.|++++++|+||+|++ .+|+||+++|++.|..++. +.|++||.|+++|+++|.+.+ +
T Consensus 81 p~vGev~~G~V~~vt~fG~FVelg~-~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~~~~~i~~ 159 (215)
T 2b8k_G 81 PFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIHA 159 (215)
T ss_dssp CCTTEEEEEEEEEEETTEEEEECTT-SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEETTEEEE
T ss_pred cCCCCEEEEEEEEEecceEEEEecC-cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEEEcCCCccEE
Confidence 4689999999999999999999998 9999999999987664443 569999999999999998765 6
Q ss_pred EEEEeecccccc
Q 000176 1432 VEVTLKTSDSRT 1443 (1924)
Q Consensus 1432 i~LSlk~~~~~~ 1443 (1924)
|. |+++.-..+
T Consensus 160 Ig-Smk~~~LG~ 170 (215)
T 2b8k_G 160 IG-SIKEDYLGA 170 (215)
T ss_dssp EE-ECCSTTCEE
T ss_pred EE-EcCCCCCCC
Confidence 66 887755443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.33 E-value=8.3e-07 Score=108.40 Aligned_cols=101 Identities=13% Similarity=0.133 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
.+|+.++.+|.+.+++++|...|++++...+.+..+|++++..+... ++++|+..|+++++..|.+ ..++..++.+.
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~--~~a~~~L~~l~ 308 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD--KAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999 9999999999999999886 47888888884
Q ss_pred H-HcCCHHHHHHHHHHHHHhCCCCH
Q 000176 1829 F-KNGVADRGRSMFEGILSEYPKRT 1852 (1924)
Q Consensus 1829 ~-~~g~~e~Ar~lfe~aL~~~Pk~~ 1852 (1924)
. ..+..+.++.+|.+++...|.+.
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 4 56788999999999999888754
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.7e-06 Score=89.78 Aligned_cols=131 Identities=9% Similarity=-0.124 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC----hH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHS------CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK----HI 1818 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~------~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~----~~ 1818 (1924)
.+|..++.+|...+++++|...|++++..++.. ..+|..++..+... ++++|...|++++...+... ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 456666666666777777777777666554211 13555666666666 66666666666665543321 13
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1819 KFISQTAILEFKNGVADRGRSMFEGILSEYPK------RTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1819 ~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk------~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
.++..+|.+++..|++++|...|++++...+. ...++..++..+...|++++|...|++++.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 45666677777777777777777777654321 123455666666666777777777776665
|
| >1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ... | Back alignment and structure |
|---|
Probab=98.33 E-value=8.4e-07 Score=96.49 Aligned_cols=65 Identities=9% Similarity=0.058 Sum_probs=56.4
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCC----------ccCCCCcEEEEEEEEEeCCCC
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE----------KEFPIGKLVAGRVLSVEPLSK 1430 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~----------~~f~~G~~V~~kVl~vd~e~~ 1430 (1924)
..+|+++.|.|++++++|+||+|++ .+|+||+|+|++.|.-++. +.|++||.|+++|+++|.+.+
T Consensus 81 ~~~Gev~~G~V~~v~~fG~FV~l~~-~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~ 155 (171)
T 1y14_B 81 PFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVS 155 (171)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETT-EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEETT
T ss_pred CCCCCEEEEEEEEEecCEEEEEecC-eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEEcCCC
Confidence 4589999999999999999999998 9999999999876543332 569999999999999998764
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.33 E-value=2.1e-06 Score=87.31 Aligned_cols=111 Identities=10% Similarity=0.070 Sum_probs=97.0
Q ss_pred CHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HH
Q 000176 1782 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR-------TD 1853 (1924)
Q Consensus 1782 ~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~-------~d 1853 (1924)
....|+.++..+... ++++|...|++++...|.. ..+|..+|.+++..|++++|...|++++...|.. ..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN--MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 356799999999999 9999999999999999876 5899999999999999999999999999998876 88
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000176 1854 LWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1898 (1924)
Q Consensus 1854 lw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~ 1898 (1924)
+|..++..+...|+++.|...|++++. ..|. . ..+..+...
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~-~-~~~~~l~~~ 121 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLA--EHRT-P-DVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCC-H-HHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH--hCCC-H-HHHHHHHHH
Confidence 999999999999999999999999999 5553 3 345544444
|
| >2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=1.1e-06 Score=99.63 Aligned_cols=76 Identities=29% Similarity=0.421 Sum_probs=68.8
Q ss_pred cCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcc-cccCcccccCCCcEEEEEEEEEecCCCeeEEecccccc
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED-HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1532 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~-~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s~~ 1532 (1924)
.++||+|.|+|+++.++|+||.|+. ...|++|+|++++. ...+..+.|++||.|.|+|++++. .+++.||+|...+
T Consensus 55 p~~GDiV~G~V~~v~~~~a~V~I~~-~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~-~~~i~LS~r~~~l 131 (229)
T 2ba0_A 55 PSVGDVVIGIIREVAANGWAVDIYS-PYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDP-KMKVTLTMKDRIC 131 (229)
T ss_dssp CCTTCEEEEEEEEECSSEEEEECSS-SSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECT-TCCEEEECCSSSC
T ss_pred CCCCCEEEEEEEEEeCCeEEEEeCC-CeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECC-CCcEEEEEccccC
Confidence 5899999999999999999999964 69999999999974 667889999999999999999995 5799999988655
|
| >3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A | Back alignment and structure |
|---|
Probab=98.31 E-value=7.4e-07 Score=97.30 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=66.1
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCC----------CcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEE
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSR----------KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~----------~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~L 1434 (1924)
.+ |++|.|+|+++.++|+||+|.. +.+|++|++++++.++.++.+.|++||.|.++|++ +++.|
T Consensus 56 p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~-----~~i~L 129 (179)
T 3m7n_A 56 VK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG-----DNLRL 129 (179)
T ss_dssp CT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE-----TTTEE
T ss_pred CC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC-----CeEEE
Confidence 46 9999999999999999999987 89999999999999999999999999999999998 78999
Q ss_pred Eeecccc
Q 000176 1435 TLKTSDS 1441 (1924)
Q Consensus 1435 Slk~~~~ 1441 (1924)
|+|...-
T Consensus 130 S~k~~~l 136 (179)
T 3m7n_A 130 STKEEEM 136 (179)
T ss_dssp ECCSTTC
T ss_pred EEecCCC
Confidence 9987543
|
| >2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=6.5e-07 Score=102.16 Aligned_cols=75 Identities=12% Similarity=0.229 Sum_probs=67.7
Q ss_pred cCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCC----cccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecc
Q 000176 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD----GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439 (1924)
Q Consensus 1364 ~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd----~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~ 1439 (1924)
..++|++|.|+|+++.++|+||+|+...+|++|++++++ .+..++.+.|++||.|.++|++++. .+++.||+|..
T Consensus 63 ~p~~GDiV~G~V~~v~~~~~~V~I~~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~-~~~i~LS~k~~ 141 (235)
T 2z0s_A 63 VPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDK-TRSPLLTVQGE 141 (235)
T ss_dssp CCCTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECT-TSCEEEECCSS
T ss_pred CCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECC-CCcEEEEEecc
Confidence 368999999999999999999999999999999999987 3567888999999999999999995 56899998753
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.2e-06 Score=88.73 Aligned_cols=92 Identities=15% Similarity=0.153 Sum_probs=50.9
Q ss_pred hCChHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHH
Q 000176 1762 TEQNKLADELLYKMIKK---FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1837 (1924)
Q Consensus 1762 ~gk~e~A~~~fe~~lk~---~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~A 1837 (1924)
.|++++|...|++++.. .|....+|+.++..+... ++++|...|+++++..|.+ ..++..+|..++..|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH--QALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHcCCHHHH
Confidence 34555555555555554 244455555555555555 6666666666666655554 35555566666666666666
Q ss_pred HHHHHHHHHhCCCCHHHH
Q 000176 1838 RSMFEGILSEYPKRTDLW 1855 (1924)
Q Consensus 1838 r~lfe~aL~~~Pk~~dlw 1855 (1924)
...|++++...|.+.+++
T Consensus 81 ~~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHhCCCcHHHH
Confidence 666666666666555543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.23 E-value=6.3e-06 Score=87.67 Aligned_cols=102 Identities=10% Similarity=-0.046 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC-------CHH-----HHHHHHHHHHhc-CHHHHHHHHHHHHHh-----
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKH-------SCK-----VWLRRVQRLLKQ-QQEGVQAVVQRALLS----- 1811 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~-------~~~-----vw~~~a~~l~~~-~~~~A~~l~~ral~~----- 1811 (1924)
..|...++.+...|++++|.+.|++++...|. ... +|.+.+..+... ++++|...|.+||..
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 34556666666666666666666666666555 222 555555555555 555555555555555
Q ss_pred --CCCCChHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000176 1812 --LPRHKHIKFI----SQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1853 (1924)
Q Consensus 1812 --~p~~~~~~~~----~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d 1853 (1924)
.|.+ ..+| +..|..+...|++++|...|++++...|.+..
T Consensus 92 e~~pd~--~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 92 ELNQDE--GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp CTTSTH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred cCCCch--HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 5543 3455 55555555555555555555555555554433
|
| >2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=1.7e-06 Score=94.23 Aligned_cols=72 Identities=19% Similarity=0.279 Sum_probs=59.7
Q ss_pred CCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCc------------ccCCCCCCEEEEEEEEeeCCCC---
Q 000176 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL------------SKTYYVGQSVRSNILDVNSETG--- 824 (1924)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~------------~~~f~~Gq~V~~~V~~id~~~~--- 824 (1924)
.+|+++.|.|++++++|+||++ +.+.||+|.|++++.+.-++ ...|++||.|+++|+++|.+.+
T Consensus 80 ~~Gev~~G~V~~v~~fG~fV~l-~~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~~~ 158 (172)
T 2c35_B 80 FKGEVVDAVVTQVNKVGLFTEI-GPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIF 158 (172)
T ss_dssp CTTCEEEEEEEEEETTEEEEEE-TTEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEETTEEE
T ss_pred CCCCEEEEEEEEEeCCEEEEEE-CCEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEcCCCCcE
Confidence 4799999999999999999999 57889999999986543222 4469999999999999998866
Q ss_pred eEEEeeccc
Q 000176 825 RITLSLKQS 833 (1924)
Q Consensus 825 r~~lSlk~~ 833 (1924)
++. ||++.
T Consensus 159 ~ig-sm~~~ 166 (172)
T 2c35_B 159 AIG-SLMDD 166 (172)
T ss_dssp EEE-ECCST
T ss_pred EEE-EecCC
Confidence 444 77754
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.23 E-value=5e-06 Score=102.73 Aligned_cols=139 Identities=11% Similarity=0.036 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1749 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1749 ~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
...|..++..|.+.+++++|.+.|+++++..+..+ .. ..++++....|. ...+|..+|.++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-----------~~------~~~~~~~~~~~~--~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-----------AA------AEDADGAKLQPV--ALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------HH------SCHHHHGGGHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-----------cc------cChHHHHHHHHH--HHHHHHHHHHHH
Confidence 36789999999999999999999999997542111 01 112222222222 258999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1908 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~ 1908 (1924)
++.|++++|...|+++|...|++..+|..++..+...|++++|...|++|+. +.|... .+|..+.......++.+.+
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~-~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDK-AIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 677666 5777777777766666554
Q ss_pred H
Q 000176 1909 E 1909 (1924)
Q Consensus 1909 ~ 1909 (1924)
+
T Consensus 361 ~ 361 (370)
T 1ihg_A 361 E 361 (370)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.7e-05 Score=99.50 Aligned_cols=165 Identities=8% Similarity=0.012 Sum_probs=75.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhh------------HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC
Q 000176 1680 KYMAFMLSMADVEKARSIAERALQTINIREENE------------KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD 1747 (1924)
Q Consensus 1680 ~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~e------------kl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~ 1747 (1924)
.-+.-+.+.|++++|.+.|.++++..+...+.. ....+..+..++...| +.++|.+.|+++++..+
T Consensus 9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~--~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMG--AKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHH
Confidence 344555677899999999999997655432110 0012233334444444 22444444444444322
Q ss_pred C--H-----HHHHHHHHHHHHhCChHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCC
Q 000176 1748 P--K-----KVHLALLGLYERTEQNKLADELLYKMIKKFK------HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1813 (1924)
Q Consensus 1748 ~--~-----~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~------~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p 1813 (1924)
. . .++..+..++...++++.|.++|+.++...+ ....+|..++..+... ++++|..++++++....
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 1 0 2222333333344444444444444443221 1133444444444444 44444444444443322
Q ss_pred CC----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1814 RH----KHIKFISQTAILEFKNGVADRGRSMFEGILS 1846 (1924)
Q Consensus 1814 ~~----~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~ 1846 (1924)
.. ..+.++...++++...|++++|+.+|++++.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 11 1123444444444444444444444444443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.17 E-value=6.9e-05 Score=96.13 Aligned_cols=177 Identities=11% Similarity=0.051 Sum_probs=94.9
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHhCC---------hHHHHHHHHHHHHh-cCCCHH
Q 000176 1717 WVAYFNLENEYGNPPEEAVVKVFQRALQY--CDPKKVHLALLGLYERTEQ---------NKLADELLYKMIKK-FKHSCK 1784 (1924)
Q Consensus 1717 Wiayl~le~~~g~~~~e~a~~vferAl~~--~~~~~i~~~l~~i~~~~gk---------~e~A~~~fe~~lk~-~~~~~~ 1784 (1924)
+...++...+.| +.++|.++|+++.+. .|+...|..++..|.+.+. .++|.++|+.|... ...+..
T Consensus 29 l~~~id~c~k~G--~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 29 LKQKLDMCSKKG--DVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHTTTSC--CHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 444445545555 446666666666543 2344556666665554433 35566666666554 234555
Q ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Q 000176 1785 VWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY-PKRTDLWSIYLDQE 1862 (1924)
Q Consensus 1785 vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~-Pk~~dlw~~y~~le 1862 (1924)
.|..++..+.+. +.++|.++|+++.+.-- ......|..+...+.+.|++++|..+|+.....- .-+...|..++..+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~-~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGI-QPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 566666666666 66666666666654321 1123455555555556666666666666655431 22344566666666
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000176 1863 IRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1898 (1924)
Q Consensus 1863 ~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~ 1898 (1924)
.+.|+.++|..+|++.-.....|... .|...+++
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~--T~~~l~~~ 219 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKS--TFDMIEEW 219 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHH--HHHHHHHH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHH--HHHHHHHH
Confidence 66666666666666655544444433 34444433
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=6.7e-06 Score=87.27 Aligned_cols=94 Identities=16% Similarity=0.028 Sum_probs=70.6
Q ss_pred HhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-C----------HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 000176 1761 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q----------QEGVQAVVQRALLSLPRHKHIKFISQTAILEF 1829 (1924)
Q Consensus 1761 ~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~----------~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~ 1829 (1924)
+.+++++|.+.|++++...|.+...|++++..+... + +++|...|++||+..|.. ..+|..+|..+.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~--~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK--DEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc--HHHHHHHHHHHH
Confidence 445667788888888888888888888888877766 4 458888888888888776 477888888877
Q ss_pred HcC-----------CHHHHHHHHHHHHHhCCCCHHHHH
Q 000176 1830 KNG-----------VADRGRSMFEGILSEYPKRTDLWS 1856 (1924)
Q Consensus 1830 ~~g-----------~~e~Ar~lfe~aL~~~Pk~~dlw~ 1856 (1924)
..| ++++|...|+++|...|++...|.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~ 129 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLK 129 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 664 788888888888888887654443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.3e-05 Score=84.51 Aligned_cols=135 Identities=12% Similarity=-0.087 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC----
Q 000176 1714 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-------KVHLALLGLYERTEQNKLADELLYKMIKKFKHS---- 1782 (1924)
Q Consensus 1714 l~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-------~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~---- 1782 (1924)
..+|..+.......+ +.++|...|++|++..+.. .+|..++.+|...|++++|.+.|++++..++..
T Consensus 9 ~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLG--NFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 356777777777888 5599999999999876432 589999999999999999999999999876432
Q ss_pred --HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000176 1783 --CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK----HIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1850 (1924)
Q Consensus 1783 --~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~----~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk 1850 (1924)
..+|..++..+... ++++|...|++++...+... ...++..+|.+++..|++++|...|++++....+
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 56788999999999 99999999999998754321 2467888999999999999999999999987544
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.15 E-value=6.6e-05 Score=88.91 Aligned_cols=181 Identities=9% Similarity=0.057 Sum_probs=137.8
Q ss_pred HHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHhCChHHHHH
Q 000176 1694 ARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD---PKKVHLALLGLYERTEQNKLADE 1770 (1924)
Q Consensus 1694 Ar~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~---~~~i~~~l~~i~~~~gk~e~A~~ 1770 (1924)
|...+++.+..-+. .. ..+......+...| +.++|.+.+.+.+...+ ..+.+..++.+|.+.|+.+.|.+
T Consensus 85 a~~~l~~l~~~~~~-~~----~~~~~la~i~~~~g--~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k 157 (310)
T 3mv2_B 85 NIEELENLLKDKQN-SP----YELYLLATAQAILG--DLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAST 157 (310)
T ss_dssp CCHHHHHTTTTSCC-CH----HHHHHHHHHHHHHT--CHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcCCC-Cc----HHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 77888887754322 11 23445556666778 56999999999998875 34999999999999999999999
Q ss_pred HHHHHHHhcCC----CHHHHHHHHHH----HHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 000176 1771 LLYKMIKKFKH----SCKVWLRRVQR----LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMF 1841 (1924)
Q Consensus 1771 ~fe~~lk~~~~----~~~vw~~~a~~----l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lf 1841 (1924)
.++++.+..++ .-.+++.++.. .... ++.+|..+|+++...+|......++.. .++++|++++|..++
T Consensus 158 ~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 158 IFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHH
T ss_pred HHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHH
Confidence 99999887662 23444444433 3333 899999999999998886322233333 788899999999999
Q ss_pred HHHHHhC----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1842 EGILSEY----------PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1842 e~aL~~~----------Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
+.+++.+ |++.+.....+.+....|+ .|..+++++.. ..|+.+
T Consensus 235 ~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp 287 (310)
T 3mv2_B 235 ELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHA 287 (310)
T ss_dssp HHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCH
T ss_pred HHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCCh
Confidence 9888764 8899999888888888887 88999999998 777776
|
| >2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C | Back alignment and structure |
|---|
Probab=98.15 E-value=2.6e-06 Score=97.63 Aligned_cols=74 Identities=23% Similarity=0.259 Sum_probs=68.2
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCccc---CCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecc
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV---ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~---~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~ 1439 (1924)
.++|++|.|+|+++.++|+||+|+...+|++|++++++.+. .++.+.|++||.|.|+|++++. .+++.||+|..
T Consensus 72 p~~GDiV~G~V~~v~~~ga~VdI~~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~-~~~i~LS~r~~ 148 (251)
T 2je6_I 72 PKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDR-SIDPVLSVKGK 148 (251)
T ss_dssp CCTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEET-TEEEEEECCST
T ss_pred CCCCCEEEEEEEEEeCceEEEEcCCCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECC-CCcEEEEEccc
Confidence 57999999999999999999999989999999999998877 7888899999999999999995 57999998763
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.14 E-value=1.1e-05 Score=85.74 Aligned_cols=103 Identities=16% Similarity=0.035 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCC------Ch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 000176 1783 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH------KH----IKFISQTAILEFKNGVADRGRSMFEGILSE---- 1847 (1924)
Q Consensus 1783 ~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~------~~----~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~---- 1847 (1924)
...|...+..++.. ++++|...|++||...|.+ .+ ..+|...|..+...|++++|...|+++|..
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 45688888889989 9999999999999999983 21 239999999999999999999999999999
Q ss_pred ---CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 000176 1848 ---YPKRTDLW----SIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1887 (1924)
Q Consensus 1848 ---~Pk~~dlw----~~y~~le~k~gd~~~ar~lferal~~~~~pk~ 1887 (1924)
.|++...| +..+..+...|+++.|...|++++. +.|.+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle--l~p~d 135 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE--MIEER 135 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh--cCCCc
Confidence 99999999 9999999999999999999999998 55543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.09 E-value=6.1e-05 Score=94.40 Aligned_cols=193 Identities=13% Similarity=0.128 Sum_probs=145.9
Q ss_pred cCCCCchHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhH-HH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSS-----------------FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEK-LN 1715 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~-----------------~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ek-l~ 1715 (1924)
.++..+|.+.|.+++...|+.. .++..++..+...|++++|.+.+.++++..+.-..... ..
T Consensus 17 ~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 96 (434)
T 4b4t_Q 17 EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKV 96 (434)
T ss_dssp HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 4557788888888888777643 24678899999999999999999999975543221110 01
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcC------CC
Q 000176 1716 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-------KKVHLALLGLYERTEQNKLADELLYKMIKKFK------HS 1782 (1924)
Q Consensus 1716 lWiayl~le~~~g~~~~e~a~~vferAl~~~~~-------~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~------~~ 1782 (1924)
+...+..+....+ +.+.|..++++++..... ..++..++.+|...|++++|..+++.++.... ..
T Consensus 97 ~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~ 174 (434)
T 4b4t_Q 97 LKTLIEKFEQVPD--SLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSL 174 (434)
T ss_dssp HHHHHHHHCSCCS--CHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHH
T ss_pred HHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhH
Confidence 2222222223345 468999999999876421 38999999999999999999999999987642 23
Q ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 000176 1783 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-----HIKFISQTAILEFKNGVADRGRSMFEGILSEY 1848 (1924)
Q Consensus 1783 ~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~-----~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~ 1848 (1924)
..+|...+..+... ++++|+.+|++++...+... ...++...+.++...++++.|...|..++..+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 175 VDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 66899999999999 99999999999997643321 13567788888889999999999999998764
|
| >2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=6.9e-06 Score=93.04 Aligned_cols=74 Identities=22% Similarity=0.362 Sum_probs=67.9
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCc-ccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecc
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG-YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~-~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~ 1439 (1924)
.++||+|.|+|+++.++|+||+|+...+|++|++++++. +..+..+.|++||.|.|+|++++. ++++.||+|..
T Consensus 55 p~~GDiV~G~V~~v~~~~a~V~I~~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~-~~~i~LS~r~~ 129 (229)
T 2ba0_A 55 PSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDP-KMKVTLTMKDR 129 (229)
T ss_dssp CCTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECT-TCCEEEECCSS
T ss_pred CCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECC-CCcEEEEEccc
Confidence 579999999999999999999999889999999999974 678888999999999999999995 57999998763
|
| >1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A | Back alignment and structure |
|---|
Probab=98.08 E-value=2.1e-06 Score=101.72 Aligned_cols=105 Identities=16% Similarity=0.222 Sum_probs=80.3
Q ss_pred CCCCCCEEEEEEEEEe-CCeEEEEEccccccchhhH-----hhhhcccCCCcEEEEEEEEEEcceEEEEEcCCeEEEeeC
Q 000176 542 KFKVGAELVFRVLGVK-SKRITVTHKKTLVKSKLAI-----LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615 (1924)
Q Consensus 542 ~f~vG~~vk~rVl~v~-~~~l~lT~K~~Lv~~~~~~-----~~~~~~~~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~ 615 (1924)
.|.+|+.+.+.|...+ .+....|.|+.+....... +.+|. .+.|+++.|+|.++.++|+||++ |++.|+||.
T Consensus 86 ~~~vGd~ie~~I~~~dfgR~aa~~aKqvi~qkireaere~i~~e~~-~~~GeIV~G~V~ri~~~~v~VDl-Gk~EgiLp~ 163 (344)
T 1hh2_P 86 LAEVGSIVKKELNVKNFGRIAAQTAKQVLIQRIRELEKEKQFEKYS-ELKGTVTTAEVIRVMGEWADIRI-GKLETRLPK 163 (344)
T ss_dssp TCCTTCEEEEECCCCCSSSCSGGGHHHHHHHHHHHHTTCCSSCCTT-CCTTCEEEEEEEEECSSEEEEEE-TTEEEEEEG
T ss_pred cccCCCEEEEEEccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCEEEEEEEEEecCcEEEEe-CCeEEEEeH
Confidence 5899999999886664 3444445566554432221 33332 23799999999999999999999 589999999
Q ss_pred cccCCCCCCCCCCCCCCCCEEEEEEEEEcCCCC--EEEEEE
Q 000176 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR--RINLSF 654 (1924)
Q Consensus 616 sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~~--ri~lS~ 654 (1924)
+|+. |.+.|++|+.|+|.|++++.+++ ++.||.
T Consensus 164 sE~i------p~E~~~vGD~Vkv~V~~V~~~~kg~~I~LSR 198 (344)
T 1hh2_P 164 KEWI------PGEEIKAGDLVKVYIIDVVKTTKGPKILVSR 198 (344)
T ss_dssp GGSC------TTCCCCTTCEEEEEEEEEEEETTEEEEEEES
T ss_pred HHcC------CCcCCCCCCEEEEEEEEEEcCCCCcEEEEEe
Confidence 9996 55789999999999999998766 556665
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00022 Score=91.48 Aligned_cols=180 Identities=7% Similarity=0.002 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHhc--CC
Q 000176 1677 VWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP-------PEEAVVKVFQRALQY--CD 1747 (1924)
Q Consensus 1677 ~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~-------~~e~a~~vferAl~~--~~ 1747 (1924)
.+...+..+.+.|++++|.++|+++.+. ....+ ...|-.+++.....+.. ..+.|.++|++.... .|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd---~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P 103 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRN-GVQLS---QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP 103 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCCC---HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCC---HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC
Confidence 4666677778889999999999988864 22222 24566666665443321 147788888887764 36
Q ss_pred CHHHHHHHHHHHHHhCChHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 000176 1748 PKKVHLALLGLYERTEQNKLADELLYKMIKK-FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1825 (1924)
Q Consensus 1748 ~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~-~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A 1825 (1924)
+...|..++..|.+.|+.++|.++|+.|.+. ...+...|..+...+.+. +.++|.++|+++...-- ......|..+.
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~-~Pd~~ty~~Li 182 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEV-VPEEPELAALL 182 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCCHHHHHHHH
Confidence 6788999999999999999999999998875 456788888888888888 99999999999887632 22357888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Q 000176 1826 ILEFKNGVADRGRSMFEGILSE--YPKRTDLWSIYLDQE 1862 (1924)
Q Consensus 1826 ~le~~~g~~e~Ar~lfe~aL~~--~Pk~~dlw~~y~~le 1862 (1924)
..+.+.|+.++|..+|++.-.. .|. ...|.......
T Consensus 183 ~~~~~~g~~d~A~~ll~~Mr~~g~~ps-~~T~~~l~~~F 220 (501)
T 4g26_A 183 KVSMDTKNADKVYKTLQRLRDLVRQVS-KSTFDMIEEWF 220 (501)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTSSBC-HHHHHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHH
Confidence 8888999999999999887554 343 34555554443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.04 E-value=1.6e-06 Score=110.99 Aligned_cols=125 Identities=15% Similarity=-0.014 Sum_probs=105.9
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHH
Q 000176 1722 NLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQE 1799 (1924)
Q Consensus 1722 ~le~~~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~ 1799 (1924)
+.....+ +.++|.+.|++|++..|. ..+|..++.+|.+.+++++|.+.|+++++..+.+..+|+.++..+... +++
T Consensus 14 ~~~~~~g--~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAK--DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhC--CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3344566 459999999999999987 499999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhCCC
Q 000176 1800 GVQAVVQRALLSLPRHKHIKFISQTAIL--EFKNGVADRGRSMFE-----------GILSEYPK 1850 (1924)
Q Consensus 1800 ~A~~l~~ral~~~p~~~~~~~~~~~A~l--e~~~g~~e~Ar~lfe-----------~aL~~~Pk 1850 (1924)
+|.+.|++|++..|... .+|..++.. +.+.|++++|..+++ +++...|+
T Consensus 92 eA~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~ 153 (477)
T 1wao_1 92 AALRDYETVVKVKPHDK--DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE 153 (477)
T ss_dssp HHHHHHHHHHHHSTTCT--THHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred HHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence 99999999999999875 566667666 788899999999999 77766654
|
| >3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.04 E-value=2.4e-06 Score=92.83 Aligned_cols=72 Identities=17% Similarity=0.190 Sum_probs=60.7
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCC----------CccCCCCcEEEEEEEEEeCCCC---E
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP----------EKEFPIGKLVAGRVLSVEPLSK---R 1431 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~----------~~~f~~G~~V~~kVl~vd~e~~---r 1431 (1924)
..+|+++.|.|++++++|+||+|++ ++|+||+++|++.|.-++ ...|++||.|+++|+++|.+.+ +
T Consensus 82 p~~Gev~~G~V~~v~~fG~FV~l~~-~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~~~~~~ 160 (172)
T 3h0g_G 82 PFRGEVVDAIVTTVNKMGFFANIGP-LNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDATEIFA 160 (172)
T ss_dssp CCTTCEEECCCCEEETTEEECCBTT-BCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESSSCEEE
T ss_pred cCCCCEEEEEEEEEEcceEEEEeCC-eEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEEECCCCCceE
Confidence 4589999999999999999999985 779999999988765554 4689999999999999998764 4
Q ss_pred EEEEeec
Q 000176 1432 VEVTLKT 1438 (1924)
Q Consensus 1432 i~LSlk~ 1438 (1924)
|. |+|+
T Consensus 161 Ig-tm~~ 166 (172)
T 3h0g_G 161 IA-TMKE 166 (172)
T ss_dssp EE-ECCS
T ss_pred EE-EcCC
Confidence 44 5554
|
| >2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.01 E-value=9.8e-06 Score=79.55 Aligned_cols=86 Identities=21% Similarity=0.141 Sum_probs=65.3
Q ss_pred CCCEEEEEEEEEecCcCeEEEEeCC-ceEEEEecccccccccCCCCCCCCCCCEEEEEEEEEecccCCceEEEEeeeccc
Q 000176 1259 EGDIVGGRISKILSGVGGLVVQIGP-HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL 1337 (1924)
Q Consensus 1259 ~G~~v~g~V~~v~~~~~g~~V~l~~-~~~G~v~~selsd~~~~~p~~~~~~G~~v~~~Vl~vd~~~~~~~~i~LSlr~~~ 1337 (1924)
.++.++|+|...+...+.=|+.... +.++++|++++.+.. | .
T Consensus 13 ~~~~~~G~Vk~fn~~kGfGFI~~~~gg~dvfvH~s~l~~~~-------~-----------------------------~- 55 (101)
T 2bh8_A 13 QSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAGSSGA-------A-----------------------------V- 55 (101)
T ss_dssp ---CEEEEEEEEEGGGTEEEEEESSSSCEEEEECCCSCSSS-------C-----------------------------C-
T ss_pred ccccceeEEEEEECCCCCEEEEeCCCCcEEEEEEEEEecCC-------c-----------------------------c-
Confidence 7888999999986433223776544 589999999985321 0 0
Q ss_pred cCCCCCCCCCCCCCCCCCcchhhhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCccc
Q 000176 1338 DGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV 1405 (1924)
Q Consensus 1338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~ 1405 (1924)
...+++|+.|++.|..++++|+||+|..+++|+||+|+|+|.++
T Consensus 56 ------------------------~~~l~~Ge~V~g~V~~i~~fG~fv~l~~~~eGlvhis~i~~~~~ 99 (101)
T 2bh8_A 56 ------------------------RGNPQQGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWAQA 99 (101)
T ss_dssp ------------------------CCCCCTTCEEEEEEEECCSEEEEECTTSCEEEEEEEEEEEECCC
T ss_pred ------------------------ccCCCCCCEEEEEEEEeCCcEEEEEcCCCceEEEEHHHCccCcC
Confidence 02367999999999999999999999889999999999998754
|
| >1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A | Back alignment and structure |
|---|
Probab=98.00 E-value=1.2e-05 Score=95.13 Aligned_cols=120 Identities=19% Similarity=0.209 Sum_probs=87.3
Q ss_pred ccccCCCCeEe-eEEEeecCCCeEEEEecccccchhcc--CCCCcCccC--CCCEEEEEEEEEecCeEEEEECCCeEEEe
Q 000176 715 KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIH--PNSVVHGYVCNIIETGCFVRFLGRLTGFA 789 (1924)
Q Consensus 715 ~~~~~~G~~i~-~vl~id~~~~~i~ls~K~sl~~~~~~--~~~~~~~~~--~G~~~~G~V~~i~~~G~fV~f~~~l~Glv 789 (1924)
...+.+|+.++ .+...+ -++....+.|+.+...... --.-|++++ .|++++|+|.+++++|+||.+ |++.|++
T Consensus 84 d~~~~vGd~ie~~I~~~d-fgR~aa~~aKqvi~qkireaere~i~~e~~~~~GeIV~G~V~ri~~~~v~VDl-Gk~EgiL 161 (344)
T 1hh2_P 84 DPLAEVGSIVKKELNVKN-FGRIAAQTAKQVLIQRIRELEKEKQFEKYSELKGTVTTAEVIRVMGEWADIRI-GKLETRL 161 (344)
T ss_dssp CTTCCTTCEEEEECCCCC-SSSCSGGGHHHHHHHHHHHHTTCCSSCCTTCCTTCEEEEEEEEECSSEEEEEE-TTEEEEE
T ss_pred CccccCCCEEEEEEcccc-CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEecCcEEEEe-CCeEEEE
Confidence 34678999998 332222 2344566667777644321 112234444 799999999999999999999 5999999
Q ss_pred cCCccCcccccCcccCCCCCCEEEEEEEEeeCCCC--eEEEeecccccCCCchhhHHHHHHH
Q 000176 790 PRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG--RITLSLKQSCCSSTDASFMQEHFLL 849 (1924)
Q Consensus 790 ~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~--r~~lSlk~~~~~~~d~~~~~~~~~~ 849 (1924)
|+++++ |.+.|++||.|+|.|++++.+++ ++.||.+ .|.++..+|..
T Consensus 162 p~sE~i------p~E~~~vGD~Vkv~V~~V~~~~kg~~I~LSRt-------~p~~lk~Lfel 210 (344)
T 1hh2_P 162 PKKEWI------PGEEIKAGDLVKVYIIDVVKTTKGPKILVSRR-------VPEFVIGLMKL 210 (344)
T ss_dssp EGGGSC------TTCCCCTTCEEEEEEEEEEEETTEEEEEEESS-------SHHHHHHHHHH
T ss_pred eHHHcC------CCcCCCCCCEEEEEEEEEEcCCCCcEEEEEee-------ccHHHHHHHHh
Confidence 999986 56789999999999999998766 5666654 45667777763
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=1.8e-05 Score=83.96 Aligned_cols=88 Identities=15% Similarity=0.150 Sum_probs=80.5
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000176 1797 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV----------ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1866 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~----------~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~g 1866 (1924)
++++|+..|+++++..|.+ ..+|..+|..+...++ +++|+..|+++|+.+|+..++|+.++..+...|
T Consensus 17 ~feeA~~~~~~Ai~l~P~~--aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLD--ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 6899999999999999988 5999999999988775 569999999999999999999999999999875
Q ss_pred -----------CHHHHHHHHHHHHhcCCCchhH
Q 000176 1867 -----------DVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1867 -----------d~~~ar~lferal~~~~~pk~~ 1888 (1924)
++++|...|++|+. +.|+..
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~ 125 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVD--EQPDNT 125 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHH--hCCCCH
Confidence 89999999999999 777765
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.98 E-value=8.5e-06 Score=82.42 Aligned_cols=88 Identities=11% Similarity=0.063 Sum_probs=78.3
Q ss_pred CHHHHHHHHHHHHHhC---CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 000176 1797 QQEGVQAVVQRALLSL---PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRG 1873 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~---p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~ 1873 (1924)
++++|...|+++++.. |. +..+|..+|.+++..|++++|...|++++..+|++..+|..++..+.+.|++++|..
T Consensus 5 ~~~~A~~~~~~al~~~~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 5 LEAQAVPYYEKAIASGLQGKD--LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp --CCCHHHHHHHHSSCCCHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCCCcc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 6788999999999984 43 368999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCchhH
Q 000176 1874 LFERAISLSLPPKKM 1888 (1924)
Q Consensus 1874 lferal~~~~~pk~~ 1888 (1924)
.|++++. ..|...
T Consensus 83 ~~~~al~--~~p~~~ 95 (117)
T 3k9i_A 83 LLLKIIA--ETSDDE 95 (117)
T ss_dssp HHHHHHH--HHCCCH
T ss_pred HHHHHHH--hCCCcH
Confidence 9999998 444443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.96 E-value=3.1e-05 Score=77.72 Aligned_cols=79 Identities=11% Similarity=0.057 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1800 GVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1879 (1924)
Q Consensus 1800 ~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal 1879 (1924)
.|...|+++++..|.. ..+|..+|.+++..|++++|...|++++...|.....|..++..+...|+++.|+..|++++
T Consensus 3 ~a~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDN--MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCc--HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455566666655544 35666666666666666666666666666666666666666666666666666666666666
Q ss_pred h
Q 000176 1880 S 1880 (1924)
Q Consensus 1880 ~ 1880 (1924)
.
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.92 E-value=5.5e-05 Score=75.89 Aligned_cols=83 Identities=13% Similarity=-0.005 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000176 1766 KLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGI 1844 (1924)
Q Consensus 1766 e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~a 1844 (1924)
+.|.+.|+++++..|.++.+|+.++..+... ++++|...|++++...|.. ..+|..+|.++...|++++|+..|+++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY--SVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4688999999999999999999999999999 9999999999999999877 589999999999999999999999999
Q ss_pred HHhCCC
Q 000176 1845 LSEYPK 1850 (1924)
Q Consensus 1845 L~~~Pk 1850 (1924)
+...|.
T Consensus 80 l~~~~~ 85 (115)
T 2kat_A 80 LAAAQS 85 (115)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 998874
|
| >2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A | Back alignment and structure |
|---|
Probab=97.89 E-value=1.6e-05 Score=104.06 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=64.0
Q ss_pred cccCCCc--EEEEEEEEeecceEEEEEecCceeEEeeccccCc--ccc--c--------CcccccCCCcEEEEEEEEEec
Q 000176 1453 SNLHVGD--IVIGQIKRVESYGLFITIENTNLVGLCHVSELSE--DHV--D--------NIETIYRAGEKVKVKILKVDK 1518 (1924)
Q Consensus 1453 ~~l~~G~--~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~--~~~--~--------~~~~~~~~Gd~Vk~~Vl~id~ 1518 (1924)
-.-++|+ +++|+|++|++||+||+|.+.+++||+|+|+|++ ++. . +....|++||.|+|+|+++|.
T Consensus 554 l~~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~vd~ 633 (644)
T 2id0_A 554 LKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRM 633 (644)
T ss_dssp HGGGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEET
T ss_pred hhhccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEEEeC
Confidence 3457899 9999999999999999996558999999999974 221 0 234679999999999999999
Q ss_pred CCCeeEEec
Q 000176 1519 EKRRISLGM 1527 (1924)
Q Consensus 1519 e~~ri~lsl 1527 (1924)
++++|.|++
T Consensus 634 ~~~~I~~~l 642 (644)
T 2id0_A 634 ETRSIIARP 642 (644)
T ss_dssp TTTEEEEEE
T ss_pred CCCEEEEEE
Confidence 999999986
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.88 E-value=8.1e-05 Score=70.55 Aligned_cols=81 Identities=15% Similarity=0.140 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000176 1783 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1861 (1924)
Q Consensus 1783 ~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~l 1861 (1924)
...|+.++..+... ++++|...|++++...|.. ..+|..+|.+++..|++++|...|++++...|.+..+|..++..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44566666666665 6666666666666666554 35666666666666666666666666666666666666666655
Q ss_pred HHHc
Q 000176 1862 EIRL 1865 (1924)
Q Consensus 1862 e~k~ 1865 (1924)
+.+.
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5443
|
| >3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.78 E-value=4.3e-05 Score=85.10 Aligned_cols=64 Identities=19% Similarity=0.305 Sum_probs=55.4
Q ss_pred cCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccc-------------------cCcccccCCCcEEEEEEEE
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-------------------DNIETIYRAGEKVKVKILK 1515 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~-------------------~~~~~~~~~Gd~Vk~~Vl~ 1515 (1924)
-.+|+++.|+|+++++||+||+|+ .++|++|++++.+++. ++-...|+.||.|+++|++
T Consensus 79 p~~GEv~~G~Vs~vt~~GifV~lg--~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV~~ 156 (203)
T 3ayh_B 79 PFRGEVMLGKIKSCSEEGIRVTIS--FFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIES 156 (203)
T ss_dssp CCTTCEEEEEEEEEETTEEEEECS--SCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEEEE
T ss_pred cCCCCEEEEEEEEEeccEEEEEEe--CceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEEEE
Confidence 468999999999999999999994 6899999999987654 3445679999999999999
Q ss_pred EecCC
Q 000176 1516 VDKEK 1520 (1924)
Q Consensus 1516 id~e~ 1520 (1924)
++...
T Consensus 157 v~~~~ 161 (203)
T 3ayh_B 157 EDFVD 161 (203)
T ss_dssp EEECC
T ss_pred EEccc
Confidence 98644
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.78 E-value=2e-05 Score=77.87 Aligned_cols=89 Identities=15% Similarity=0.014 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHH
Q 000176 1783 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR------TDLW 1855 (1924)
Q Consensus 1783 ~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~------~dlw 1855 (1924)
...|..++..++.. ++++|...|++++...|.+ ..+|..+|..++..|++++|...|++++...|++ ..+|
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN--PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 34555556555555 6666666666666665554 3556666666666666666666666666666655 4455
Q ss_pred HHHHHHHHHcCCHHHHHH
Q 000176 1856 SIYLDQEIRLGDVDLIRG 1873 (1924)
Q Consensus 1856 ~~y~~le~k~gd~~~ar~ 1873 (1924)
..++..+...|+++.|..
T Consensus 82 ~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHhHhhhHh
Confidence 555555555544444433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.75 E-value=1.4e-05 Score=79.07 Aligned_cols=95 Identities=9% Similarity=-0.004 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh----HHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH----IKFISQT 1824 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~----~~~~~~~ 1824 (1924)
..|..++..+...|++++|.+.|++++...|.++.+|..++..+... ++++|...|++++...|.+.. ..++..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 84 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRL 84 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999 999999999999999987621 4677888
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 000176 1825 AILEFKNGVADRGRSMFEGI 1844 (1924)
Q Consensus 1825 A~le~~~g~~e~Ar~lfe~a 1844 (1924)
+..+...|+++.|...|+++
T Consensus 85 ~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 85 ELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHhHhhhHhHHHHh
Confidence 88888888777766665543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00027 Score=66.80 Aligned_cols=81 Identities=17% Similarity=0.135 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
..|..++.+|...+++++|...|++++...+.+..+|+.++..+... ++++|...|++++...|.+ ..++..+|.++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--HHHHHHHHHHH
Confidence 67888899999999999999999999999888999999999999988 9999999999999998876 57888888887
Q ss_pred HHcC
Q 000176 1829 FKNG 1832 (1924)
Q Consensus 1829 ~~~g 1832 (1924)
...|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 6654
|
| >2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.63 E-value=5.9e-05 Score=84.50 Aligned_cols=67 Identities=13% Similarity=0.227 Sum_probs=56.0
Q ss_pred ccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccc--------------cCcccccCCCcEEEEEEEEEecC
Q 000176 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV--------------DNIETIYRAGEKVKVKILKVDKE 1519 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~--------------~~~~~~~~~Gd~Vk~~Vl~id~e 1519 (1924)
.-.+|+++.|+|++|++||+||+|.+ .++|++|++++.+++. ++-...|+.||.|+++|.++|..
T Consensus 78 ~p~vGEv~~G~Is~Vt~fGifVeL~g-~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~~~ 156 (218)
T 2ckz_B 78 KPFLGEIVTGWISKCTAEGIKVSLLG-IFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFV 156 (218)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECTT-SCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEEEC
T ss_pred cCCCCCEEEEEEEEEccCcEEEEccC-ccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEEcc
Confidence 45689999999999999999999964 6899999999977653 22356799999999999999975
Q ss_pred CC
Q 000176 1520 KR 1521 (1924)
Q Consensus 1520 ~~ 1521 (1924)
.+
T Consensus 157 ~~ 158 (218)
T 2ckz_B 157 DV 158 (218)
T ss_dssp CC
T ss_pred cC
Confidence 54
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0016 Score=75.28 Aligned_cols=111 Identities=11% Similarity=0.107 Sum_probs=86.3
Q ss_pred HHHHHHHhCCC-CChHHHHHHHHHHHH-H--cCC------HHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHc-----C
Q 000176 1804 VVQRALLSLPR-HKHIKFISQTAILEF-K--NGV------ADRGRSMFEGILSEYPKRTD--LWSIYLDQEIRL-----G 1866 (1924)
Q Consensus 1804 l~~ral~~~p~-~~~~~~~~~~A~le~-~--~g~------~e~Ar~lfe~aL~~~Pk~~d--lw~~y~~le~k~-----g 1866 (1924)
-+..++..+.. +...-+|...+..-+ . .|+ ...|+.++++++..+|+..+ +|..++.+|.+. |
T Consensus 139 ~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gG 218 (301)
T 3u64_A 139 RLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGG 218 (301)
T ss_dssp HHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTC
T ss_pred hHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCC
Confidence 34555655532 222346666666543 1 233 78999999999999999544 999999999995 9
Q ss_pred CHHHHHHHHHHHHhcCCCchh-HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 000176 1867 DVDLIRGLFERAISLSLPPKK-MKFLFKKYLEYEKS-VGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1867 d~~~ar~lferal~~~~~pk~-~k~lw~~yl~~E~~-~G~~~~~~~v~~rAle 1917 (1924)
+.++|+.+|+||+. +.|.. + ..+..|.+|... .|+.+.+..++++|+.
T Consensus 219 d~ekA~~~ferAL~--LnP~~~i-d~~v~YA~~l~~~~gd~~~a~~~L~kAL~ 268 (301)
T 3u64_A 219 GMEKAHTAFEHLTR--YCSAHDP-DHHITYADALCIPLNNRAGFDEALDRALA 268 (301)
T ss_dssp CHHHHHHHHHHHHH--HCCTTCS-HHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 99999999999999 78765 6 689999999877 4999999999999976
|
| >2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 | Back alignment and structure |
|---|
Probab=97.49 E-value=8.8e-05 Score=98.77 Aligned_cols=70 Identities=20% Similarity=0.250 Sum_probs=53.6
Q ss_pred cEEEEEEEEeecceEEEEEecCceeEEeeccccC--cccc-----------cC----cccccCCCcEEEEEEEEEecC--
Q 000176 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELS--EDHV-----------DN----IETIYRAGEKVKVKILKVDKE-- 1519 (1924)
Q Consensus 1459 ~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels--~~~~-----------~~----~~~~~~~Gd~Vk~~Vl~id~e-- 1519 (1924)
+++.|+|.+|.+||+||.|.+.+++||||+|+++ +++. .+ ....|++||.|+|+|+.+|.+
T Consensus 671 ~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd~~~~ 750 (760)
T 2vnu_D 671 STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPIT 750 (760)
T ss_dssp SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC-------
T ss_pred eEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEECccc
Confidence 7999999999999999999766899999999996 4331 12 257899999999999999988
Q ss_pred -CCeeEEecc
Q 000176 1520 -KRRISLGMK 1528 (1924)
Q Consensus 1520 -~~ri~lslK 1528 (1924)
++||.||||
T Consensus 751 ~~~kI~lslk 760 (760)
T 2vnu_D 751 SKRKAELLLK 760 (760)
T ss_dssp -CCEEEC---
T ss_pred cCCcEEEEeC
Confidence 799999987
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00024 Score=69.52 Aligned_cols=68 Identities=10% Similarity=-0.043 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 000176 1780 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYP 1849 (1924)
Q Consensus 1780 ~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~P 1849 (1924)
|.++.+|+.++..++.. ++++|...|+++++..|... .+|..+|.+++..|++++|+..|++++...|
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYV--GTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 45555666666666655 66666666666666665542 5566666666666666666666666665544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0002 Score=69.37 Aligned_cols=61 Identities=10% Similarity=-0.069 Sum_probs=33.4
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCC
Q 000176 1755 LLGLYERTEQNKLADELLYKMIKKFKHSCK-VWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH 1815 (1924)
Q Consensus 1755 l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~-vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~ 1815 (1924)
.+..+...|++++|.+.|+++++..+.+.. +|+.++..+... ++++|...|+++++..|.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 444455555555555555555555555555 555555555555 5555555555555555544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00039 Score=68.05 Aligned_cols=63 Identities=17% Similarity=0.110 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1818 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1818 ~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
..+|..+|..++..|++++|...|++++...|+...+|..++..+...|+++.|...|++++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999999999999999999999999999999998
|
| >2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0001 Score=86.37 Aligned_cols=73 Identities=21% Similarity=0.174 Sum_probs=60.9
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCc-ccC---------CCCccCCCCcEEEEEEEEEeCCCCEEEE
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG-YVE---------SPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~-~~~---------~~~~~f~~G~~V~~kVl~vd~e~~ri~L 1434 (1924)
.++|++|.|+|+++..+|+||+|+...+|++|++++++. .+. +..+.|++||.|.|+|++++ +++.+.|
T Consensus 93 P~vGDvViG~Vt~V~~~~a~VdI~s~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~-~~~~i~L 171 (308)
T 2nn6_H 93 GEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVF-SDGAVSL 171 (308)
T ss_dssp CCSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEE-TTTEEEE
T ss_pred CCCCCEEEEEEEEEeCceEEEEECCCcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcC-CCCCEEE
Confidence 579999999999999999999999778999999999752 221 23368999999999999999 4778999
Q ss_pred Eeec
Q 000176 1435 TLKT 1438 (1924)
Q Consensus 1435 Slk~ 1438 (1924)
|.|.
T Consensus 172 Str~ 175 (308)
T 2nn6_H 172 HTRS 175 (308)
T ss_dssp ECCS
T ss_pred EecC
Confidence 9885
|
| >2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0001 Score=99.86 Aligned_cols=71 Identities=20% Similarity=0.243 Sum_probs=61.1
Q ss_pred CcEEEEEEEEeecceEEEEEecCceeEEeeccccC--cccc-----------cC----cccccCCCcEEEEEEEEEecC-
Q 000176 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS--EDHV-----------DN----IETIYRAGEKVKVKILKVDKE- 1519 (1924)
Q Consensus 1458 G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels--~~~~-----------~~----~~~~~~~Gd~Vk~~Vl~id~e- 1519 (1924)
|+++.|.|.+|.+||+||.|.+.+++||+|+|+|+ +++. ++ ....|++||.|+|+|+.+|.+
T Consensus 887 ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd~~~ 966 (977)
T 2wp8_J 887 ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPI 966 (977)
T ss_dssp TCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCCCCSS
T ss_pred ceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEEcCcc
Confidence 99999999999999999999766899999999997 4431 11 347899999999999999874
Q ss_pred --CCeeEEecc
Q 000176 1520 --KRRISLGMK 1528 (1924)
Q Consensus 1520 --~~ri~lslK 1528 (1924)
++||.||||
T Consensus 967 ~~~~kI~Lslk 977 (977)
T 2wp8_J 967 TSKRKAELLLK 977 (977)
T ss_dssp SCCCCCCEEEC
T ss_pred cCCCceEEEeC
Confidence 489999997
|
| >2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00023 Score=88.94 Aligned_cols=75 Identities=23% Similarity=0.374 Sum_probs=64.1
Q ss_pred cccCCCcEEEEEEEEeecc--eEEEEEecCceeEEeeccccCcccc---------cCcccccCCCcEEEEEEEEEecCCC
Q 000176 1453 SNLHVGDIVIGQIKRVESY--GLFITIENTNLVGLCHVSELSEDHV---------DNIETIYRAGEKVKVKILKVDKEKR 1521 (1924)
Q Consensus 1453 ~~l~~G~~v~G~V~~v~~~--GvFV~l~~~~v~gl~h~sels~~~~---------~~~~~~~~~Gd~Vk~~Vl~id~e~~ 1521 (1924)
....+|+++.|+|++|.++ |+||+|++ +..||+|+|++++.+. .++.+.+++||.|.|.|++.....+
T Consensus 41 ~~~~vGnIY~GkV~rv~p~~~aAFVdiG~-gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~g~K 119 (517)
T 2bx2_L 41 HEQKKANIYKGKITRIEPSLEAAFVDYGA-ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNK 119 (517)
T ss_dssp SCCCTTCEEEEEEEEEETTTTEEEEESSS-SSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCTTC
T ss_pred CcCCCCCEEEEEEEEeccCCceEEEEeCC-CcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeeccccC
Confidence 3567999999999999999 99999976 8999999999988763 3466789999999999999987777
Q ss_pred eeEEecc
Q 000176 1522 RISLGMK 1528 (1924)
Q Consensus 1522 ri~lslK 1528 (1924)
...|+..
T Consensus 120 Ga~lTt~ 126 (517)
T 2bx2_L 120 GAALTTF 126 (517)
T ss_dssp CCEEESS
T ss_pred CceEEee
Confidence 7666544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00019 Score=69.56 Aligned_cols=67 Identities=13% Similarity=0.123 Sum_probs=47.8
Q ss_pred HHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000176 1788 RRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIK-FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1856 (1924)
Q Consensus 1788 ~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~-~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~ 1856 (1924)
..+..++.. ++++|...|+++++..|.+ .. +|..+|.+++..|++++|...|++++...|++..+|.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 73 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVG--KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA 73 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSST--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 445555666 7777777777777777665 35 7777777777777777777777777777777766663
|
| >2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00016 Score=84.79 Aligned_cols=77 Identities=19% Similarity=0.280 Sum_probs=63.2
Q ss_pred ccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcc----ccc------CcccccCCCcEEEEEEEEEecCCCee
Q 000176 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED----HVD------NIETIYRAGEKVKVKILKVDKEKRRI 1523 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~----~~~------~~~~~~~~Gd~Vk~~Vl~id~e~~ri 1523 (1924)
-.++||+|.|+|+++.++|+||+|.. ...|++|+|+++.. +.. +..+.|++||.|.|+|++++ +.+.+
T Consensus 92 ~P~vGDvViG~Vt~V~~~~a~VdI~s-~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~-~~~~i 169 (308)
T 2nn6_H 92 IGEVGDIVVGRITEVQQKRWKVETNS-RLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVF-SDGAV 169 (308)
T ss_dssp CCCSSBCCCEEEEEEETTEEEEECSS-SSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEE-TTTEE
T ss_pred CCCCCCEEEEEEEEEeCceEEEEECC-CcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcC-CCCCE
Confidence 45899999999999999999999963 57899999999753 221 34578999999999999999 56789
Q ss_pred EEecccccc
Q 000176 1524 SLGMKSSYF 1532 (1924)
Q Consensus 1524 ~lslK~s~~ 1532 (1924)
.||+|...+
T Consensus 170 ~LStr~~~L 178 (308)
T 2nn6_H 170 SLHTRSLKY 178 (308)
T ss_dssp EEECCSSTT
T ss_pred EEEecCcCC
Confidence 999987655
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0006 Score=86.82 Aligned_cols=121 Identities=10% Similarity=0.070 Sum_probs=77.4
Q ss_pred HHhCChHHHHHHHHHHHHhcC-----C---CHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC----C-CCCh-HHHHHHH
Q 000176 1760 ERTEQNKLADELLYKMIKKFK-----H---SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL----P-RHKH-IKFISQT 1824 (1924)
Q Consensus 1760 ~~~gk~e~A~~~fe~~lk~~~-----~---~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~----p-~~~~-~~~~~~~ 1824 (1924)
...|+|++|..+|++++.... . ....+.+++..|..+ ++++|..+|+++|... + .+.+ ...+.++
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 345666666666666665431 2 233455666666666 6666666666666532 2 2211 2467788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1825 AILEFKNGVADRGRSMFEGILSEY-----PKRTD---LWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1825 A~le~~~g~~e~Ar~lfe~aL~~~-----Pk~~d---lw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
|.+|..+|++++|..+|+++|... |+..+ +...+.+.+..++.+++|..+|.++..
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888642 44443 455666666677788888888887765
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0021 Score=66.99 Aligned_cols=105 Identities=8% Similarity=-0.081 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----c-CHHHHHHHHHH
Q 000176 1733 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK----Q-QQEGVQAVVQR 1807 (1924)
Q Consensus 1733 e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~----~-~~~~A~~l~~r 1807 (1924)
++|...|++|++..+..-. ++.+|......++|.+.|+++... .++..++.++.++.. . ++++|...|++
T Consensus 12 ~~A~~~~~~aa~~g~~~a~---lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 86 (138)
T 1klx_A 12 KKAIQYYVKACELNEMFGC---LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSK 86 (138)
T ss_dssp HHHHHHHHHHHHTTCTTHH---HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHhhh---HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Confidence 4555555555555433322 555555445555555555555543 344555555555554 3 55555555555
Q ss_pred HHHhCCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 000176 1808 ALLSLPRHKHIKFISQTAILEFK----NGVADRGRSMFEGILS 1846 (1924)
Q Consensus 1808 al~~~p~~~~~~~~~~~A~le~~----~g~~e~Ar~lfe~aL~ 1846 (1924)
|.+. .+...+..+|.++.. .+++++|..+|+++..
T Consensus 87 Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 87 ACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 5443 123445555555544 4455555555555443
|
| >2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0003 Score=92.07 Aligned_cols=72 Identities=10% Similarity=0.046 Sum_probs=62.2
Q ss_pred CCCCC--EEEEEEEEEeeceEEEEe-CCCcEEEEECccCCC--cc-cC---------CCCccCCCCcEEEEEEEEEeCCC
Q 000176 1365 LSPNM--IVQGYVKNVTSKGCFIML-SRKLDAKVLLSNLSD--GY-VE---------SPEKEFPIGKLVAGRVLSVEPLS 1429 (1924)
Q Consensus 1365 lk~G~--~v~G~V~~v~~~G~fV~l-~~~v~g~v~~selsd--~~-~~---------~~~~~f~~G~~V~~kVl~vd~e~ 1429 (1924)
-++|+ ++.|+|++++++|+||.| ..+++|+||+++|++ +| .- +....|++||.|+++|+++|.+.
T Consensus 556 ~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~vd~~~ 635 (644)
T 2id0_A 556 DKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMET 635 (644)
T ss_dssp GGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEETTT
T ss_pred hccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEEEeCCC
Confidence 46899 999999999999999999 468999999999984 22 11 33457999999999999999999
Q ss_pred CEEEEEe
Q 000176 1430 KRVEVTL 1436 (1924)
Q Consensus 1430 ~ri~LSl 1436 (1924)
++|.+++
T Consensus 636 ~~I~~~l 642 (644)
T 2id0_A 636 RSIIARP 642 (644)
T ss_dssp TEEEEEE
T ss_pred CEEEEEE
Confidence 9999987
|
| >3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00035 Score=77.78 Aligned_cols=63 Identities=11% Similarity=0.057 Sum_probs=53.5
Q ss_pred CCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccc-------------------cCcccCCCCCCEEEEEEEEee
Q 000176 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR-------------------ADLSKTYYVGQSVRSNILDVN 820 (1924)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~-------------------~~~~~~f~~Gq~V~~~V~~id 820 (1924)
..|+++.|.|++++++|+||++ +.+.|++|.+++.+++. .+....|++||.|+++|.+++
T Consensus 80 ~~GEv~~G~Vs~vt~~GifV~l-g~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~ 158 (203)
T 3ayh_B 80 FRGEVMLGKIKSCSEEGIRVTI-SFFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIESED 158 (203)
T ss_dssp CTTCEEEEEEEEEETTEEEEEC-SSCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEeccEEEEEE-eCceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEEEEEE
Confidence 4699999999999999999999 78999999999976542 334456999999999999998
Q ss_pred CCC
Q 000176 821 SET 823 (1924)
Q Consensus 821 ~~~ 823 (1924)
...
T Consensus 159 ~~~ 161 (203)
T 3ayh_B 159 FVD 161 (203)
T ss_dssp ECC
T ss_pred ccc
Confidence 743
|
| >1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00051 Score=81.48 Aligned_cols=80 Identities=20% Similarity=0.312 Sum_probs=65.5
Q ss_pred CCCCEEEEEEEE----EecCeEEEEECC---CeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeecc
Q 000176 760 HPNSVVHGYVCN----IIETGCFVRFLG---RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832 (1924)
Q Consensus 760 ~~G~~~~G~V~~----i~~~G~fV~f~~---~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~ 832 (1924)
++|++++|.|.+ +.+.++||.+.+ ++.|++|++++. |.+.|++||.|+|.|++|+.+.+...+.+..
T Consensus 129 r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~Eqi------P~E~~~~GDrVkvyV~~V~~~~kgpqI~LSR 202 (366)
T 1k0r_A 129 REGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAREPLITLSR 202 (366)
T ss_dssp CTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSSSCEEEEES
T ss_pred cCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcC------CCccCCCCCEEEEEEEEEecCCCccEEEEEe
Confidence 489999999999 999999999976 599999999986 4579999999999999999886654444322
Q ss_pred cccCCCchhhHHHHHHHH
Q 000176 833 SCCSSTDASFMQEHFLLE 850 (1924)
Q Consensus 833 ~~~~~~d~~~~~~~~~~~ 850 (1924)
+.|.|+..+|..+
T Consensus 203 -----T~p~lv~~Lfe~E 215 (366)
T 1k0r_A 203 -----THPNLVRKLFSLE 215 (366)
T ss_dssp -----SCHHHHHHHHHHH
T ss_pred -----CChHHHHHHHHhc
Confidence 3567788877743
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00059 Score=86.86 Aligned_cols=129 Identities=12% Similarity=0.107 Sum_probs=99.2
Q ss_pred HcCCCCHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhc-----CCC---HHHHHH
Q 000176 1726 EYGNPPEEAVVKVFQRALQYCDP---------KKVHLALLGLYERTEQNKLADELLYKMIKKF-----KHS---CKVWLR 1788 (1924)
Q Consensus 1726 ~~g~~~~e~a~~vferAl~~~~~---------~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~-----~~~---~~vw~~ 1788 (1924)
..|. .++|...|++|++.... ...+..++.+|...|++++|..+|++++..+ ++. ...+.+
T Consensus 321 ~qg~--~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 321 SEGL--YHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp TTTC--HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred hCCC--HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4574 49999999999976421 2889999999999999999999999999765 334 445789
Q ss_pred HHHHHHhc-CHHHHHHHHHHHHHhC-----CCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000176 1789 RVQRLLKQ-QQEGVQAVVQRALLSL-----PRHKH-IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1856 (1924)
Q Consensus 1789 ~a~~l~~~-~~~~A~~l~~ral~~~-----p~~~~-~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~ 1856 (1924)
+|..+..+ ++++|..+|++|+... |+|.. .++...+++.+..++.+++|..+|.++....-++..+|.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~~~~ 473 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPMQV 473 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 99999999 9999999999999754 33321 245677788888899999999999998766555556663
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00084 Score=64.97 Aligned_cols=69 Identities=13% Similarity=0.035 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHHHhc----CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000176 1780 KHSCKVWLRRVQRLLKQ----QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1850 (1924)
Q Consensus 1780 ~~~~~vw~~~a~~l~~~----~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk 1850 (1924)
|+++.+|..|++.++.. ..++|+.+|++||+..|.+ +..+..+|..+++.|++++|...|++++...|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~--~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN--EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45566666666666544 2566666666666666655 466666666666666666666666666666665
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0066 Score=66.15 Aligned_cols=133 Identities=10% Similarity=0.057 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHh--c--CCCHHHHHHHHHHHHhc----CH---HHHH-HHHHHHHHhCCCCC-------hHHHHHHHHH
Q 000176 1766 KLADELLYKMIKK--F--KHSCKVWLRRVQRLLKQ----QQ---EGVQ-AVVQRALLSLPRHK-------HIKFISQTAI 1826 (1924)
Q Consensus 1766 e~A~~~fe~~lk~--~--~~~~~vw~~~a~~l~~~----~~---~~A~-~l~~ral~~~p~~~-------~~~~~~~~A~ 1826 (1924)
+..+..|+..+.. + .+...+|..|..+..+. .. ..-. .+++||+..+.... .+++|..||.
T Consensus 9 ~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~ 88 (202)
T 3esl_A 9 NQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYIN 88 (202)
T ss_dssp HHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHH
Confidence 3455556555544 3 34456677777776655 11 1123 56777777554321 2567777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000176 1827 LEFKNGVADRGRSMFEGILSEY--PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1901 (1924)
Q Consensus 1827 le~~~g~~e~Ar~lfe~aL~~~--Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~ 1901 (1924)
+. ..++...++.+|..+...- -+...+|..|+.++...|++.+|..+|+.++... ......+-.+|-.|+.+
T Consensus 89 ~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~--A~P~~rL~~~~~~F~~R 162 (202)
T 3esl_A 89 LF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN--CRPYNRLLRSLSNYEDR 162 (202)
T ss_dssp HH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CBSHHHHHHHHHHHHHH
T ss_pred hh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CccHHHHHHHHHHHHHH
Confidence 65 2334567777777776543 3456677777777777788888888888888733 33344567777777655
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0033 Score=65.49 Aligned_cols=109 Identities=10% Similarity=-0.095 Sum_probs=92.4
Q ss_pred CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH----cCCHHHH
Q 000176 1763 EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK----NGVADRG 1837 (1924)
Q Consensus 1763 gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~----~g~~e~A 1837 (1924)
.++++|...|+++..... +... ++.++... ..++|...|++|.+. .+...+..+|.+++. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 357889999999998753 3333 77777777 888899999999986 246899999999998 7899999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 000176 1838 RSMFEGILSEYPKRTDLWSIYLDQEIR----LGDVDLIRGLFERAISL 1881 (1924)
Q Consensus 1838 r~lfe~aL~~~Pk~~dlw~~y~~le~k----~gd~~~ar~lferal~~ 1881 (1924)
..+|+++... .+.+.+..++.++.. .+++++|..+|+++...
T Consensus 81 ~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 81 AQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 9999999876 678899999999998 89999999999999984
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0025 Score=66.62 Aligned_cols=128 Identities=13% Similarity=0.231 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHhc--CCCHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCCC-------hHHHHHHHHHHHHHcCC
Q 000176 1766 KLADELLYKMIKKF--KHSCKVWLRRVQRLLKQ---QQEGVQAVVQRALLSLPRHK-------HIKFISQTAILEFKNGV 1833 (1924)
Q Consensus 1766 e~A~~~fe~~lk~~--~~~~~vw~~~a~~l~~~---~~~~A~~l~~ral~~~p~~~-------~~~~~~~~A~le~~~g~ 1833 (1924)
..+++.|+..+..+ .+...+|..|+.+..+. ....-..+++|+++.+.... .+++|+.||.+.
T Consensus 7 ~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~----- 81 (152)
T 4a1g_A 7 ENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENKEYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN----- 81 (152)
T ss_dssp HHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCTHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB-----
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc-----
Confidence 34555666666555 24466788887777776 33335677888887764422 267888888753
Q ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000176 1834 ADRGRSMFEGILSEY--PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1901 (1924)
Q Consensus 1834 ~e~Ar~lfe~aL~~~--Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~ 1901 (1924)
+.++.+|.-+...- -+...+|..|+.++...|++.+|..+|+.++.. .......+-.+|-.|+.+
T Consensus 82 -~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~--~A~P~~rL~~~~~~F~~R 148 (152)
T 4a1g_A 82 -SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN--QAEPREFLQQQYRLFQTR 148 (152)
T ss_dssp -SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCBSHHHHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCccHHHHHHHHHHHHHH
Confidence 33778888876543 345678888888888889999999999999983 444455678888877754
|
| >2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00058 Score=85.28 Aligned_cols=77 Identities=14% Similarity=0.133 Sum_probs=66.0
Q ss_pred CCCCCEEEEEEEEEeec--eEEEEeCCCcEEEEECccCCCcccC---------CCCccCCCCcEEEEEEEEEeCCCCEEE
Q 000176 1365 LSPNMIVQGYVKNVTSK--GCFIMLSRKLDAKVLLSNLSDGYVE---------SPEKEFPIGKLVAGRVLSVEPLSKRVE 1433 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~--G~fV~l~~~v~g~v~~selsd~~~~---------~~~~~f~~G~~V~~kVl~vd~e~~ri~ 1433 (1924)
..+|+++.|+|+++.++ |+||+++.+.+||+|++++++.+.. +..+.+++||.|.|.|+.....++...
T Consensus 43 ~~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~g~KGa~ 122 (517)
T 2bx2_L 43 QKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAA 122 (517)
T ss_dssp CCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCTTCCCE
T ss_pred CCCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeeccccCCce
Confidence 46899999999999999 9999999999999999999987742 345679999999999999887777777
Q ss_pred EEeecccc
Q 000176 1434 VTLKTSDS 1441 (1924)
Q Consensus 1434 LSlk~~~~ 1441 (1924)
||..-+..
T Consensus 123 lTt~isl~ 130 (517)
T 2bx2_L 123 LTTFISLA 130 (517)
T ss_dssp EESSCCEE
T ss_pred EEeeEEec
Confidence 77765543
|
| >2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00046 Score=77.33 Aligned_cols=65 Identities=14% Similarity=0.122 Sum_probs=54.1
Q ss_pred CCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccc--------------cCcccCCCCCCEEEEEEEEeeCCCC
Q 000176 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR--------------ADLSKTYYVGQSVRSNILDVNSETG 824 (1924)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~--------------~~~~~~f~~Gq~V~~~V~~id~~~~ 824 (1924)
..|+++.|.|++++++|+||++.|.+.|++|.+.+.+++. ++....|++||.|+++|.++|..++
T Consensus 80 ~vGEv~~G~Is~Vt~fGifVeL~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~~~~~ 158 (218)
T 2ckz_B 80 FLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDV 158 (218)
T ss_dssp CTTCEEEEEEEEEETTEEEEECTTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEEECCC
T ss_pred CCCCEEEEEEEEEccCcEEEEccCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEEcccC
Confidence 3599999999999999999999888999999999975442 2224459999999999999997653
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0059 Score=73.53 Aligned_cols=129 Identities=11% Similarity=0.009 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc---------CHHHHHHHHHHH--HHhCCCCChHHHHHHHHHHHHHcCC
Q 000176 1765 NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ---------QQEGVQAVVQRA--LLSLPRHKHIKFISQTAILEFKNGV 1833 (1924)
Q Consensus 1765 ~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~---------~~~~A~~l~~ra--l~~~p~~~~~~~~~~~A~le~~~g~ 1833 (1924)
+.+|.++|+++++..|....+|-.++..+... .....+..++++ +...|.. ..++..+|..++..|+
T Consensus 215 ~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~--a~~~~alal~~l~~gd 292 (372)
T 3ly7_A 215 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNL--SIIYQIKAVSALVKGK 292 (372)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTC--HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcC--HHHHHHHHHHHHhCCC
Confidence 35566666666666665555544322222111 111222233322 1222333 5677777777777799
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000176 1834 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1898 (1924)
Q Consensus 1834 ~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~ 1898 (1924)
++.|+..+++++..+|. ...|..++.++.-.|++++|.+.|++|+. +.|...-.+|..-+-|
T Consensus 293 ~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~~~~l~F 354 (372)
T 3ly7_A 293 TDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYWIENGIF 354 (372)
T ss_dssp HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHHHhCcee
Confidence 99999999999998874 56677778888888999999999999998 5554443555554444
|
| >1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00061 Score=80.81 Aligned_cols=70 Identities=21% Similarity=0.349 Sum_probs=56.2
Q ss_pred ccccC--CCcEEEEEEEE----eecceEEEEEec--CceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCe-
Q 000176 1452 LSNLH--VGDIVIGQIKR----VESYGLFITIEN--TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR- 1522 (1924)
Q Consensus 1452 ~~~l~--~G~~v~G~V~~----v~~~GvFV~l~~--~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~r- 1522 (1924)
+..|+ +|++|+|+|.+ +.++++||.|+. .+++|++|.+|+.. .+.|++||+|+|.|++|+.+.+.
T Consensus 123 ~~ef~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~EqiP------~E~~~~GDrVkvyV~~V~~~~kgp 196 (366)
T 1k0r_A 123 YGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVP------GESYEHGNRLRCYVVGVTRGAREP 196 (366)
T ss_dssp ----CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSCT------TCCCCTTCEEEEEEEEEECCSSSC
T ss_pred HHHHHhcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcCC------CccCCCCCEEEEEEEEEecCCCcc
Confidence 55665 99999999999 999999999963 14999999999874 46899999999999999987654
Q ss_pred -eEEec
Q 000176 1523 -ISLGM 1527 (1924)
Q Consensus 1523 -i~lsl 1527 (1924)
|.||.
T Consensus 197 qI~LSR 202 (366)
T 1k0r_A 197 LITLSR 202 (366)
T ss_dssp EEEEES
T ss_pred EEEEEe
Confidence 55554
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.014 Score=63.58 Aligned_cols=132 Identities=11% Similarity=0.057 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHh---CCh---HHHH-HHHHHHHHhcCCC---------HHHHHHHHH
Q 000176 1733 EAVVKVFQRALQY-----CDPKKVHLALLGLYERT---EQN---KLAD-ELLYKMIKKFKHS---------CKVWLRRVQ 1791 (1924)
Q Consensus 1733 e~a~~vferAl~~-----~~~~~i~~~l~~i~~~~---gk~---e~A~-~~fe~~lk~~~~~---------~~vw~~~a~ 1791 (1924)
+..+..|++.++. .++..+|..|+....++ |.. ..-. .+++++++.|.+. .++|+.|+.
T Consensus 9 ~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~ 88 (202)
T 3esl_A 9 NQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYIN 88 (202)
T ss_dssp HHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHH
Confidence 5567778888876 24469999999866543 222 2344 7899999877432 678999999
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH
Q 000176 1792 RLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT-DLWSIYLDQEIR 1864 (1924)
Q Consensus 1792 ~l~~~~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~-dlw~~y~~le~k 1864 (1924)
++.......++++|.-+...-=...+..+|..||.++...|++.+|..+|+.+++....-. .+...|-.+..+
T Consensus 89 ~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~~~~F~~R 162 (202)
T 3esl_A 89 LFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRSLSNYEDR 162 (202)
T ss_dssp HHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHH
T ss_pred hhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 7621147789999999988776777789999999999999999999999999999875433 367777777765
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0044 Score=65.02 Aligned_cols=89 Identities=8% Similarity=0.023 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc----CHHHHHHHHHHHHHhC-CCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 000176 1766 KLADELLYKMIKKFKHSCKVWLRRVQRLLKQ----QQEGVQAVVQRALLSL-PRHKHIKFISQTAILEFKNGVADRGRSM 1840 (1924)
Q Consensus 1766 e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~----~~~~A~~l~~ral~~~-p~~~~~~~~~~~A~le~~~g~~e~Ar~l 1840 (1924)
..+++.|++.+...+.+..+.++|+-.+.+. +++++..+|+..++.. |. .+.+.++.+|..+++.|++++|+..
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~-~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH-HHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc-chHHHHHHHHHHHHHccCHHHHHHH
Confidence 3455556555555555666666666666665 4456666676666665 31 1246666677777777777777777
Q ss_pred HHHHHHhCCCCHHHH
Q 000176 1841 FEGILSEYPKRTDLW 1855 (1924)
Q Consensus 1841 fe~aL~~~Pk~~dlw 1855 (1924)
|+++|+..|++....
T Consensus 94 ~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAK 108 (152)
T ss_dssp HHHHHHHCTTCHHHH
T ss_pred HHHHHhcCCCCHHHH
Confidence 777777777665543
|
| >2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0011 Score=74.44 Aligned_cols=70 Identities=31% Similarity=0.472 Sum_probs=61.3
Q ss_pred CCCEEEEEEEE----EecCcCeEEEEeCC---ceEEEEecccccccccCCCCCCCCCCCEEEEEEEEEecccCCceEEEE
Q 000176 1259 EGDIVGGRISK----ILSGVGGLVVQIGP---HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1331 (1924)
Q Consensus 1259 ~G~~v~g~V~~----v~~~~~g~~V~l~~---~~~G~v~~selsd~~~~~p~~~~~~G~~v~~~Vl~vd~~~~~~~~i~L 1331 (1924)
+|++|+|+|.+ +.+. .++|+||. +.+|+||..|+. |.+.|++|+.|+|+|++++.+.+ ..++.|
T Consensus 7 ~GeIVtG~V~r~~~~v~~~--~ViVdlG~~~~k~EgiLP~~Eqi------p~E~~~~GDrIkayV~~V~~~~~-gpqIiL 77 (251)
T 2asb_A 7 EGEIVAGVIQRDSRANARG--LVVVRIGTETKASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAR-EPLITL 77 (251)
T ss_dssp TTCEEEEEEECCHHHHHTT--CEEEEECSSSSCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSS-SCEEEE
T ss_pred CCCEEEEEEEEccccccCC--eEEEEeCCCCcceEEEEcHHHcC------CCccCCCCCEEEEEEEEEEcCCC-CCEEEE
Confidence 89999999999 7877 99999997 699999999984 67899999999999999997644 368999
Q ss_pred eeeccc
Q 000176 1332 SLRSSL 1337 (1924)
Q Consensus 1332 Slr~~~ 1337 (1924)
|...+.
T Consensus 78 SRt~p~ 83 (251)
T 2asb_A 78 SRTHPN 83 (251)
T ss_dssp ESSCHH
T ss_pred EeccHH
Confidence 986654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.026 Score=68.00 Aligned_cols=173 Identities=7% Similarity=0.027 Sum_probs=103.9
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHhCCCCHHHHHHHHHHH--HHc---CCHHHHHHHHHHHHHhcCCcchhhHHHHHH
Q 000176 1644 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFM--LSM---ADVEKARSIAERALQTINIREENEKLNIWV 1718 (1924)
Q Consensus 1644 ~~~~~e~~~~~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~--~~~---~e~dkAr~v~eraL~~i~~~ee~ekl~lWi 1718 (1924)
++...-...+....+ ....+++...-|.+..+|-.|+... +.. ..+.+|+.+|++|++..|.....- ..+++
T Consensus 165 ei~~~I~~aL~~~l~--~~e~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~-A~la~ 241 (372)
T 3ly7_A 165 DLLESLSKALNQPWP--QRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYAR-AEKAL 241 (372)
T ss_dssp HHHHHHHHHTTCCCC--HHHHHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHH-HHHHH
T ss_pred HHHHHHHHHhCchhh--HHHHHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHH-HHHHH
Confidence 444444444454443 4456677777888888887777654 322 356899999999999888432111 12233
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-C
Q 000176 1719 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q 1797 (1924)
Q Consensus 1719 ayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~ 1797 (1924)
+|+.+...... . ........++ .+.. .++...+..+.+|..++..++.. +
T Consensus 242 a~~~~~~~~~~-~-~~~~~~l~~a--------------------------~~a~-~a~~~~~~~a~~~~alal~~l~~gd 292 (372)
T 3ly7_A 242 VDIVRHSQHPL-D-EKQLAALNTE--------------------------IDNI-VTLPELNNLSIIYQIKAVSALVKGK 292 (372)
T ss_dssp HHHHHHHHSCC-C-HHHHHHHHHH--------------------------HHHH-HTCGGGTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhccCCC-c-hhhHHHHHHH--------------------------HHHH-HhcccCCcCHHHHHHHHHHHHhCCC
Confidence 44422222111 1 1111111111 1100 11123356777777777766666 8
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000176 1798 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1851 (1924)
Q Consensus 1798 ~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~ 1851 (1924)
+++|...++||+...|. ...|..+|.++.-.|++++|.+.|++|+..+|..
T Consensus 293 ~d~A~~~l~rAl~Ln~s---~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 293 TDESYQAINTGIDLEMS---WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 88888888888888753 3567777888888888888888888888888864
|
| >2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0019 Score=72.53 Aligned_cols=78 Identities=23% Similarity=0.316 Sum_probs=66.3
Q ss_pred CCCCEEEEEEEE----EecCeEEEEECC---CeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCC--CeEEEee
Q 000176 760 HPNSVVHGYVCN----IIETGCFVRFLG---RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET--GRITLSL 830 (1924)
Q Consensus 760 ~~G~~~~G~V~~----i~~~G~fV~f~~---~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~--~r~~lSl 830 (1924)
++|++++|.|.+ +.+..+||.+.. +..|++|++++. |.+.|++||.|+|.|++++.+. .++.||.
T Consensus 6 r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqi------p~E~~~~GDrIkayV~~V~~~~~gpqIiLSR 79 (251)
T 2asb_A 6 REGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAREPLITLSR 79 (251)
T ss_dssp CTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSSSCEEEEES
T ss_pred cCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcC------CCccCCCCCEEEEEEEEEEcCCCCCEEEEEe
Confidence 469999999999 888999999965 599999999985 5688999999999999999875 6788886
Q ss_pred cccccCCCchhhHHHHHHHH
Q 000176 831 KQSCCSSTDASFMQEHFLLE 850 (1924)
Q Consensus 831 k~~~~~~~d~~~~~~~~~~~ 850 (1924)
. .+.|+..+|..+
T Consensus 80 t-------~p~lvk~Lfe~E 92 (251)
T 2asb_A 80 T-------HPNLVRKLFSLE 92 (251)
T ss_dssp S-------CHHHHHHHHHHH
T ss_pred c-------cHHHHHHHHHhc
Confidence 4 567788888743
|
| >2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0016 Score=70.06 Aligned_cols=76 Identities=16% Similarity=0.164 Sum_probs=63.4
Q ss_pred cCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEe------cc
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG------MK 1528 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~ls------lK 1528 (1924)
.++||+|-|.|+.+..++.+|+|.+....|++|++++.. ..++....|++||.|.|+|.+++. ...+.|+ +|
T Consensus 5 P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~g-~~k~~r~~l~~GDlV~ArV~~~~~-~~~~~Ltc~~~~~~r 82 (175)
T 2ja9_A 5 PSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPN-ASKKNRPTLQVGDLVYARVCTAEK-ELEAEIECFDSTTGR 82 (175)
T ss_dssp CCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSSTT-CCSSSCCCCCTTCEEEEEEEECCT-TSCCEEESSCTTTCS
T ss_pred CCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHCCc-hhhhhhccCCCCCEEEEEEEEecC-CCceEEEeccccccc
Confidence 368999999999999999999996315899999998863 345677889999999999999984 4688998 66
Q ss_pred cccc
Q 000176 1529 SSYF 1532 (1924)
Q Consensus 1529 ~s~~ 1532 (1924)
+..+
T Consensus 83 ~~~l 86 (175)
T 2ja9_A 83 DAGF 86 (175)
T ss_dssp CTTC
T ss_pred ccCC
Confidence 5544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0061 Score=63.95 Aligned_cols=88 Identities=10% Similarity=0.008 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHH
Q 000176 1797 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG---VADRGRSMFEGILSEY-P-KRTDLWSIYLDQEIRLGDVDLI 1871 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g---~~e~Ar~lfe~aL~~~-P-k~~dlw~~y~~le~k~gd~~~a 1871 (1924)
....+++.|.+.++..+.. .++..+||..+.+.. +.++|..+|+.+++.. | .+.+.|+.++-.+++.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~~~--~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVS--KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCC--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCCCc--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 4677889999998876643 699999999999888 6679999999999998 7 5789999999999999999999
Q ss_pred HHHHHHHHhcCCCchhH
Q 000176 1872 RGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1872 r~lferal~~~~~pk~~ 1888 (1924)
+..|++++. ..|.+.
T Consensus 91 ~~y~~~lL~--ieP~n~ 105 (152)
T 1pc2_A 91 LKYVRGLLQ--TEPQNN 105 (152)
T ss_dssp HHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHh--cCCCCH
Confidence 999999999 666544
|
| >2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0021 Score=69.19 Aligned_cols=70 Identities=19% Similarity=0.195 Sum_probs=61.5
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCC-CcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEe
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSR-KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~-~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSl 1436 (1924)
.++||+|-|.|+++...+.+|+|++ ..+|++|++++. ...++....|++||.|.++|.+++. +..+.||.
T Consensus 5 P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~-g~~k~~r~~l~~GDlV~ArV~~~~~-~~~~~Ltc 75 (175)
T 2ja9_A 5 PSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFP-NASKKNRPTLQVGDLVYARVCTAEK-ELEAEIEC 75 (175)
T ss_dssp CCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSST-TCCSSSCCCCCTTCEEEEEEEECCT-TSCCEEES
T ss_pred CCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHCC-chhhhhhccCCCCCEEEEEEEEecC-CCceEEEe
Confidence 3689999999999999999999998 899999999886 3456677889999999999999985 56788884
|
| >4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0082 Score=66.52 Aligned_cols=126 Identities=12% Similarity=0.187 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhc---CCCHHHHHHHHHHHHhc--C----HHHHHHHHHHHHHhCCCCC-------hHHHHHHHHHHHHHc
Q 000176 1768 ADELLYKMIKKF---KHSCKVWLRRVQRLLKQ--Q----QEGVQAVVQRALLSLPRHK-------HIKFISQTAILEFKN 1831 (1924)
Q Consensus 1768 A~~~fe~~lk~~---~~~~~vw~~~a~~l~~~--~----~~~A~~l~~ral~~~p~~~-------~~~~~~~~A~le~~~ 1831 (1924)
.+..|+..+..+ .+...+|+.|+.+..+. . -..-..+++||+..+.... .+++|+.||.+
T Consensus 54 ~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~---- 129 (223)
T 4aez_C 54 ERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY---- 129 (223)
T ss_dssp HHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc----
Confidence 344444444332 34455666666666555 1 1123456666666654421 25677777763
Q ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000176 1832 GVADRGRSMFEGILSEY--PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1901 (1924)
Q Consensus 1832 g~~e~Ar~lfe~aL~~~--Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~ 1901 (1924)
.+.++.+|..+...- -+...+|..|+.++...|++.+|..+|+.+|..... ....+-.+|-.|+.+
T Consensus 130 --~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~--P~~rL~~~~~~F~~R 197 (223)
T 4aez_C 130 --IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK--PFLRFQQKYQQFTHR 197 (223)
T ss_dssp --CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB--SHHHHHHHHHHHHHH
T ss_pred --cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc--cHHHHHHHHHHHHHH
Confidence 135556666665542 344566777777777777777777777777773333 344466666666543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0049 Score=59.55 Aligned_cols=63 Identities=10% Similarity=-0.013 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1818 IKFISQTAILEFKNGV---ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1818 ~~~~~~~A~le~~~g~---~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
..+|..||+.++..++ .++|+.+|+++|+.+|++...+..++..+++.|++++|...|++++.
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6899999999975554 79999999999999999999999999999999999999999999998
|
| >4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.021 Score=63.28 Aligned_cols=127 Identities=12% Similarity=0.092 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHhc----CCCHHHHHHHHHHHHHh---CC--hHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHH
Q 000176 1733 EAVVKVFQRALQY----CDPKKVHLALLGLYERT---EQ--NKLADELLYKMIKKFKHS---------CKVWLRRVQRLL 1794 (1924)
Q Consensus 1733 e~a~~vferAl~~----~~~~~i~~~l~~i~~~~---gk--~e~A~~~fe~~lk~~~~~---------~~vw~~~a~~l~ 1794 (1924)
+..+..|+++++. .++..+|..|+....++ |. -..-..+++++++.|.+. .++|+.|+.+
T Consensus 52 ~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~-- 129 (223)
T 4aez_C 52 QKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY-- 129 (223)
T ss_dssp HHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc--
Confidence 3455566666654 35568888888866654 21 223567888888877432 6678888874
Q ss_pred hcCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHH
Q 000176 1795 KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD-LWSIYLDQEIR 1864 (1924)
Q Consensus 1795 ~~~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d-lw~~y~~le~k 1864 (1924)
.+.++.+|.-+...-=...+..+|..||.++...|++.+|..+|+..++....=.+ +...|..|..+
T Consensus 130 ---~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F~~R 197 (223)
T 4aez_C 130 ---IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKYQQFTHR 197 (223)
T ss_dssp ---CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHHHHHHHHH
T ss_pred ---cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 24666788888776666667788999999999999999999999999987644333 55666666544
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.012 Score=61.36 Aligned_cols=112 Identities=12% Similarity=0.112 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHc
Q 000176 1798 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN---GVADRGRSMFEGILSEYPK---------RTDLWSIYLDQEIRL 1865 (1924)
Q Consensus 1798 ~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~---g~~e~Ar~lfe~aL~~~Pk---------~~dlw~~y~~le~k~ 1865 (1924)
...+++.|+..|.....++.+.+|..|..+-.+. |. ..-..++|++++.+.+ -..+|..|+++.
T Consensus 6 ~~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~--- 81 (152)
T 4a1g_A 6 PENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN--- 81 (152)
T ss_dssp HHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB---
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc---
Confidence 3567788999999987788899999999988743 43 3467889999876533 245899999873
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1866 GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1866 gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
..++.+|..+...++-.+-+ .||..|+.+.+..|+++.|..||+++++
T Consensus 82 ---~dp~~if~~L~~~~IG~~~A-lfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 82 ---SDLHQFFEFLYNHGIGTLSS-PLYIAWAGHLEAQGELQHASAVLQRGIQ 129 (152)
T ss_dssp ---SCHHHHHHHHHTTTTTTTBH-HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHCCCcHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33889999999988888888 7999999999999999999999999976
|
| >2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0013 Score=87.60 Aligned_cols=69 Identities=20% Similarity=0.263 Sum_probs=52.3
Q ss_pred CEEEEEEEEEecCeEEEEECC-CeEEEecCCccC--ccc---c--------cC----cccCCCCCCEEEEEEEEeeCC--
Q 000176 763 SVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAV--DGQ---R--------AD----LSKTYYVGQSVRSNILDVNSE-- 822 (1924)
Q Consensus 763 ~~~~G~V~~i~~~G~fV~f~~-~l~Glv~~s~~s--~~~---~--------~~----~~~~f~~Gq~V~~~V~~id~~-- 822 (1924)
..+.|+|.+++++|+||.+.+ |+.||+|.++++ +++ . .. ....|++||.|+|+|.++|.+
T Consensus 671 ~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd~~~~ 750 (760)
T 2vnu_D 671 STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPIT 750 (760)
T ss_dssp SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC-------
T ss_pred eEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEECccc
Confidence 689999999999999999987 999999999995 322 1 12 246799999999999999998
Q ss_pred -CCeEEEeec
Q 000176 823 -TGRITLSLK 831 (1924)
Q Consensus 823 -~~r~~lSlk 831 (1924)
++|+.||||
T Consensus 751 ~~~kI~lslk 760 (760)
T 2vnu_D 751 SKRKAELLLK 760 (760)
T ss_dssp -CCEEEC---
T ss_pred cCCcEEEEeC
Confidence 699999986
|
| >2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.011 Score=62.66 Aligned_cols=123 Identities=12% Similarity=0.195 Sum_probs=83.5
Q ss_pred HHHHHHhc--CCCHHHHHHHHHHHHhc--CH---HHHHHHHHHHHHhCCCCC-------hHHHHHHHHHHHHHcCCHHHH
Q 000176 1772 LYKMIKKF--KHSCKVWLRRVQRLLKQ--QQ---EGVQAVVQRALLSLPRHK-------HIKFISQTAILEFKNGVADRG 1837 (1924)
Q Consensus 1772 fe~~lk~~--~~~~~vw~~~a~~l~~~--~~---~~A~~l~~ral~~~p~~~-------~~~~~~~~A~le~~~g~~e~A 1837 (1924)
|+..+..+ .+...+|..|+.+.... .- ..-..+++|++..+.... .+++|+.||.+. + .+
T Consensus 6 fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~---~p 79 (164)
T 2wvi_A 6 FEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---N---EP 79 (164)
T ss_dssp HHHHCCCCCSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---S---CH
T ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---C---CH
Confidence 44444333 35577788888877765 11 123567888888775432 267888888763 3 36
Q ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHc
Q 000176 1838 RSMFEGILSEY--PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSV 1902 (1924)
Q Consensus 1838 r~lfe~aL~~~--Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~ 1902 (1924)
+.+|..+...- -+...+|..|+.++...|++.+|..+|..++.. .......+-.+|-.|+...
T Consensus 80 ~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~--~A~P~~~L~~~~~~F~~R~ 144 (164)
T 2wvi_A 80 LDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ--KAEPLERLQSQHRQFQARV 144 (164)
T ss_dssp HHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHH
Confidence 67787776543 356678888999888999999999999999983 3444556788888887654
|
| >2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0014 Score=88.86 Aligned_cols=70 Identities=20% Similarity=0.263 Sum_probs=59.9
Q ss_pred CCEEEEEEEEEecCeEEEEECC-CeEEEecCCccC--ccc---c--------cC----cccCCCCCCEEEEEEEEeeCC-
Q 000176 762 NSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAV--DGQ---R--------AD----LSKTYYVGQSVRSNILDVNSE- 822 (1924)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~-~l~Glv~~s~~s--~~~---~--------~~----~~~~f~~Gq~V~~~V~~id~~- 822 (1924)
|....|+|..++++|+||++.+ |+.||+|.++++ +++ . .. ....|++||.|+|+|.++|.+
T Consensus 887 ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd~~~ 966 (977)
T 2wp8_J 887 ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPI 966 (977)
T ss_dssp TCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCCCCSS
T ss_pred ceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEEcCcc
Confidence 8999999999999999999997 999999999996 332 1 11 346799999999999999974
Q ss_pred --CCeEEEeec
Q 000176 823 --TGRITLSLK 831 (1924)
Q Consensus 823 --~~r~~lSlk 831 (1924)
++|+.||||
T Consensus 967 ~~~~kI~Lslk 977 (977)
T 2wp8_J 967 TSKRKAELLLK 977 (977)
T ss_dssp SCCCCCCEEEC
T ss_pred cCCCceEEEeC
Confidence 489999986
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.021 Score=56.13 Aligned_cols=77 Identities=9% Similarity=0.068 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCC-----CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000176 1783 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP-----RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1856 (1924)
Q Consensus 1783 ~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p-----~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~ 1856 (1924)
+.-.+.+|.+++.. +++.|..-|+.|++..+ ......++..+|..+++.|+++.|...++++++..|.+..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 34455666666666 77777777777766542 1234567777777777777777777777777777777766654
Q ss_pred HHH
Q 000176 1857 IYL 1859 (1924)
Q Consensus 1857 ~y~ 1859 (1924)
.+.
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 443
|
| >2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.022 Score=60.35 Aligned_cols=108 Identities=6% Similarity=0.046 Sum_probs=84.4
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHH---cCCHH-HHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHH
Q 000176 1803 AVVQRALLSLPRHKHIKFISQTAILEFK---NGVAD-RGRSMFEGILSEYPKR---------TDLWSIYLDQEIRLGDVD 1869 (1924)
Q Consensus 1803 ~l~~ral~~~p~~~~~~~~~~~A~le~~---~g~~e-~Ar~lfe~aL~~~Pk~---------~dlw~~y~~le~k~gd~~ 1869 (1924)
..|+..|.....+..+.+|..|..+... .|..+ .-..++|++++.+-++ ..+|..|+++. +
T Consensus 4 ~~fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~--- 77 (164)
T 2wvi_A 4 RAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---N--- 77 (164)
T ss_dssp HHHHHHCCCCCSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---S---
T ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---C---
Confidence 4577777766667779999999998764 23322 3467899999876442 45899999883 3
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1870 LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1870 ~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
..+.+|..+...++-.+-+ .||..|+.+.+..|++..|..||+++++
T Consensus 78 ~p~~if~~L~~~~IG~~~A-lfY~~wA~~lE~~~~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLA-QFYISWAEEYEARENFRKADAIFQEGIQ 124 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBH-HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCcchhhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3778899998888887878 7999999999999999999999999976
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.021 Score=71.46 Aligned_cols=84 Identities=8% Similarity=0.049 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHHhC-----CCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH---HHHHHHHHH
Q 000176 1797 QQEGVQAVVQRALLSL-----PRHKH-IKFISQTAILEFKNGVADRGRSMFEGILSEY-----PKRTD---LWSIYLDQE 1862 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~-----p~~~~-~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~-----Pk~~d---lw~~y~~le 1862 (1924)
++++|..+|+++|... |.+.+ ..++..+|.+|..+|++++|..+|+++|..+ |++.+ .++.++.++
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~ 392 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLY 392 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 3555555555555532 22211 2567778888888888888888888888653 44544 578888888
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 000176 1863 IRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1863 ~k~gd~~~ar~lferal~ 1880 (1924)
..+|++++|..+|++|+.
T Consensus 393 ~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 393 MGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHH
Confidence 899999999999999887
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.037 Score=54.39 Aligned_cols=69 Identities=12% Similarity=0.093 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1818 IKFISQTAILEFKNGVADRGRSMFEGILSEY-------PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1818 ~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~-------Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
..-...+|..++..|++++|...|+.++... +.+.+++..++..+.+.|+++.|..++++++. +.|...
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~ 80 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQ 80 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCH
Confidence 3567789999999999999999999999864 34678999999999999999999999999998 666665
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.041 Score=68.76 Aligned_cols=94 Identities=9% Similarity=-0.065 Sum_probs=77.6
Q ss_pred HcCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCchhHHHHHHHH
Q 000176 1830 KNGVADRGRSMFEGILSE-----YPKRTD---LWSIYLDQEIRLGDVDLIRGLFERAISL------SLPPKKMKFLFKKY 1895 (1924)
Q Consensus 1830 ~~g~~e~Ar~lfe~aL~~-----~Pk~~d---lw~~y~~le~k~gd~~~ar~lferal~~------~~~pk~~k~lw~~y 1895 (1924)
.+|++++|..+|+++|.. .|++.+ .+..++..+..+|++++|..+|++++.. ...|.-+ ..+...
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a-~~l~nL 388 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVA-SMWLKL 388 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHH-HHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHH-HHHHHH
Confidence 468999999999999985 355555 5788899999999999999999999972 2344444 457777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhhhC
Q 000176 1896 LEYEKSVGEEERIEYVKQKAMEYVESTLA 1924 (1924)
Q Consensus 1896 l~~E~~~G~~~~~~~v~~rAle~v~~~~~ 1924 (1924)
......+|++++|..+|++|++..+..+|
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG 417 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVAHG 417 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcC
Confidence 78889999999999999999999887664
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.27 E-value=0.09 Score=53.15 Aligned_cols=90 Identities=8% Similarity=0.011 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc----CHHHHHHHHHHHHHhC-CCCChHHHHHHHHHHHHHcCCHHHHHH
Q 000176 1765 NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ----QQEGVQAVVQRALLSL-PRHKHIKFISQTAILEFKNGVADRGRS 1839 (1924)
Q Consensus 1765 ~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~----~~~~A~~l~~ral~~~-p~~~~~~~~~~~A~le~~~g~~e~Ar~ 1839 (1924)
...+++.|++.+...+.+...-++||-.+.+. +..++..+|+..+... |. ...+..+.+|..+++.|+|++|+.
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~-~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH-HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34555666666655556666666676666665 3344666666666554 21 124667777777777777777777
Q ss_pred HHHHHHHhCCCCHHHH
Q 000176 1840 MFEGILSEYPKRTDLW 1855 (1924)
Q Consensus 1840 lfe~aL~~~Pk~~dlw 1855 (1924)
.++.+|+..|.+..+.
T Consensus 96 ~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHCTTCHHHH
T ss_pred HHHHHHHhCCCCHHHH
Confidence 7777777777765544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.16 Score=63.52 Aligned_cols=87 Identities=11% Similarity=-0.003 Sum_probs=71.6
Q ss_pred Hhc-CHHHHHHHHHHHHHhCCC---CCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH---HHHHH
Q 000176 1794 LKQ-QQEGVQAVVQRALLSLPR---HKH---IKFISQTAILEFKNGVADRGRSMFEGILSEY-----PKRTD---LWSIY 1858 (1924)
Q Consensus 1794 ~~~-~~~~A~~l~~ral~~~p~---~~~---~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~-----Pk~~d---lw~~y 1858 (1924)
..+ ++++|.++|+++|..... ..| ..++..+|.++..+|++++|..+++++|..+ |++++ .++.+
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 344 899999999999975321 223 3678888999999999999999999999753 44554 58889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 000176 1859 LDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1859 ~~le~k~gd~~~ar~lferal~ 1880 (1924)
+.++..+|++++|..+|++|+.
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999999999999998
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.062 Score=67.20 Aligned_cols=89 Identities=10% Similarity=0.026 Sum_probs=70.2
Q ss_pred HHHHHHhCChHHHHHHHHHHHHhcC-----CC---HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC----CCCChH---H
Q 000176 1756 LGLYERTEQNKLADELLYKMIKKFK-----HS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL----PRHKHI---K 1819 (1924)
Q Consensus 1756 ~~i~~~~gk~e~A~~~fe~~lk~~~-----~~---~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~----p~~~~~---~ 1819 (1924)
+.-+.+.|++++|.++|++++.... .+ ..++.+++..+..+ ++++|..+++++|... +.. |+ .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~-Hp~~a~ 372 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS-HPVRGV 372 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS-CHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC-ChHHHH
Confidence 3345577899999999999997652 23 55677888888888 9999999999999753 322 33 4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1820 FISQTAILEFKNGVADRGRSMFEGIL 1845 (1924)
Q Consensus 1820 ~~~~~A~le~~~g~~e~Ar~lfe~aL 1845 (1924)
.+.++|.++..+|++++|..+|++++
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 68888999999999999999999986
|
| >2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 | Back alignment and structure |
|---|
Probab=94.70 E-value=0.05 Score=63.15 Aligned_cols=70 Identities=9% Similarity=0.036 Sum_probs=60.0
Q ss_pred cCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEec
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lsl 1527 (1924)
.++||+|-|+|+++......|.|.. ...|++|.+++.. ..++....|++||.|.|+|++++ ....+.|+.
T Consensus 125 P~vGDiVIG~Vt~v~~~~~~VdI~s-~~~a~L~~~~f~G-atk~~r~~f~~GDlV~ArV~s~~-~~~~~eLsc 194 (289)
T 2nn6_G 125 PVKGDHVIGIVTAKSGDIFKVDVGG-SEPASLSYLSFEG-ATKRNRPNVQVGDLIYGQFVVAN-KDMEPEMVC 194 (289)
T ss_dssp CCSSEEEEEEEEEEETTEEEEECSS-SSCCCEESCSSSC-CSSCSSSSSCTTCEEEEEEEECC-TTSCCEEEC
T ss_pred CCCCCEEEEEEEEEeCcEEEEEECC-CceeEEehhhcCc-chhhhhhhcCCCCEEEEEEEEcC-CCCceEEEe
Confidence 4899999999999999999999975 6889999998763 34567789999999999999998 455788887
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=94.51 E-value=1.7 Score=53.00 Aligned_cols=171 Identities=10% Similarity=0.074 Sum_probs=109.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHH-----
Q 000176 1679 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVH----- 1752 (1924)
Q Consensus 1679 ~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~----- 1752 (1924)
+.++..+.+.++.++.+++........+.-.-..-..+--.++++.....+ +.+.-.+++..+++.+... ..|
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDA-GTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777766544322210000001222233333333222 3456666777777655432 333
Q ss_pred -HHHHHHHHHhCChHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCC---CC--ChHH
Q 000176 1753 -LALLGLYERTEQNKLADELLYKMIKKFKH------SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP---RH--KHIK 1819 (1924)
Q Consensus 1753 -~~l~~i~~~~gk~e~A~~~fe~~lk~~~~------~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p---~~--~~~~ 1819 (1924)
..++.+|...|+|.+|..++.++.+.... -.+++..-.+++... ++.+++++|.+|..... .+ -...
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 37889999999999999999998876532 245566777777777 99999999998875431 11 1235
Q ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC
Q 000176 1820 FISQTAILEF-KNGVADRGRSMFEGILSEYPK 1850 (1924)
Q Consensus 1820 ~~~~~A~le~-~~g~~e~Ar~lfe~aL~~~Pk 1850 (1924)
+...-|.+++ ..+++..|...|=.++..+..
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~ 213 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAFEGFDS 213 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHHhcccc
Confidence 6666777888 799999999999998877643
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=94.39 E-value=0.85 Score=55.71 Aligned_cols=165 Identities=13% Similarity=0.053 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCCC--hHH--H
Q 000176 1752 HLALLGLYERTEQNKLADELLYKMIKKFKH-----SCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPRHK--HIK--F 1820 (1924)
Q Consensus 1752 ~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~-----~~~vw~~~a~~l~~~--~~~~A~~l~~ral~~~p~~~--~~~--~ 1820 (1924)
.+.++.+|.+.+++++..+++.....-++. ..++-..+.+++... ..+.-.+++..+++-....+ .+. +
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777777777777777665443322 233333444444443 33444445555554322111 112 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCchhHHH
Q 000176 1821 ISQTAILEFKNGVADRGRSMFEGILSEYPK---RTD---LWSIYLDQEIRLGDVDLIRGLFERAISLS----LPPKKMKF 1890 (1924)
Q Consensus 1821 ~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk---~~d---lw~~y~~le~k~gd~~~ar~lferal~~~----~~pk~~k~ 1890 (1924)
-.++|.+++..|++.+|.+++.++++...+ ... ++..-++++...+++.+++.+|..|.+.. .+|.-+-.
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 337788888888888888888887775433 333 34444556677788888888887776521 34444422
Q ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHH
Q 000176 1891 LFKKYLEYEK-SVGEEERIEYVKQKAM 1916 (1924)
Q Consensus 1891 lw~~yl~~E~-~~G~~~~~~~v~~rAl 1916 (1924)
+...-.-+.. ..++++.|...|-.|.
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 3333333455 5677777777776664
|
| >2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 | Back alignment and structure |
|---|
Probab=94.19 E-value=0.071 Score=61.90 Aligned_cols=71 Identities=13% Similarity=0.115 Sum_probs=61.6
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEee
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1437 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk 1437 (1924)
.++||+|-|+|+++....+.|+|.....|.++++++. ...+.....|++||.|.++|++++. .+.++||.-
T Consensus 125 P~vGDiVIG~Vt~v~~~~~~VdI~s~~~a~L~~~~f~-Gatk~~r~~f~~GDlV~ArV~s~~~-~~~~eLsc~ 195 (289)
T 2nn6_G 125 PVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFE-GATKRNRPNVQVGDLIYGQFVVANK-DMEPEMVCI 195 (289)
T ss_dssp CCSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSSS-CCSSCSSSSSCTTCEEEEEEEECCT-TSCCEEECS
T ss_pred CCCCCEEEEEEEEEeCcEEEEEECCCceeEEehhhcC-cchhhhhhhcCCCCEEEEEEEEcCC-CCceEEEec
Confidence 4799999999999999999999999899999999876 3456677889999999999999984 566888873
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.36 E-value=0.58 Score=47.30 Aligned_cols=87 Identities=11% Similarity=0.043 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHH
Q 000176 1797 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD---RGRSMFEGILSEY-P-KRTDLWSIYLDQEIRLGDVDLI 1871 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e---~Ar~lfe~aL~~~-P-k~~dlw~~y~~le~k~gd~~~a 1871 (1924)
....++..|.+++...+.. .++...||..+.+..+.. +|..+++.+++.. | .+.+..+.++-.+++.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~~s--~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVS--KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCCCc--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 4677888899888865533 589999999998777654 5999999999987 6 5667788888899999999999
Q ss_pred HHHHHHHHhcCCCchh
Q 000176 1872 RGLFERAISLSLPPKK 1887 (1924)
Q Consensus 1872 r~lferal~~~~~pk~ 1887 (1924)
|..++.+|. ..|.+
T Consensus 94 ~~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 94 LKYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHHHHH--HCTTC
T ss_pred HHHHHHHHH--hCCCC
Confidence 999999999 66644
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=92.61 E-value=2.2 Score=57.47 Aligned_cols=166 Identities=14% Similarity=-0.050 Sum_probs=92.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000176 1679 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGL 1758 (1924)
Q Consensus 1679 ~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i 1758 (1924)
...+.|+...+..+.|....+... .-+.+....+ +.+.|.++ ++..+....|..++.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~----------------~~f~~~l~~~--~~~~A~~~----~~~~~~~~~W~~la~~ 690 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD----------------QKFELALKVG--QLTLARDL----LTDESAEMKWRALGDA 690 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH----------------HHHHHHHHHT--CHHHHHHH----HTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCcc----------------hheehhhhcC--CHHHHHHH----HHhhCcHhHHHHHHHH
Confidence 556667777777777665553211 1123345566 34666544 3445667888888888
Q ss_pred HHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHH
Q 000176 1759 YERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGR 1838 (1924)
Q Consensus 1759 ~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar 1838 (1924)
+.+.++++.|...|.++-. ++.+..++.. ... .+.+..+|......|+++.|.
T Consensus 691 al~~~~~~~A~~~y~~~~d--------------------~~~l~~l~~~-----~~~--~~~~~~~~~~a~~~~~~~~A~ 743 (814)
T 3mkq_A 691 SLQRFNFKLAIEAFTNAHD--------------------LESLFLLHSS-----FNN--KEGLVTLAKDAETTGKFNLAF 743 (814)
T ss_dssp HHHTTCHHHHHHHHHHHTC--------------------HHHHHHHHHH-----TTC--HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHccC--------------------hhhhHHHHHH-----cCC--HHHHHHHHHHHHHcCchHHHH
Confidence 8888888888888887641 3333333222 011 234445555555566666665
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh--HHHHHHHHHHHHHHcCCHH
Q 000176 1839 SMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK--MKFLFKKYLEYEKSVGEEE 1906 (1924)
Q Consensus 1839 ~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~--~k~lw~~yl~~E~~~G~~~ 1906 (1924)
.+|.++ .-+..-++++.+.++++.|..+-++ ..|.. +..+...|.+.....|+.+
T Consensus 744 ~~~~~~--------g~~~~a~~~~~~~~~~~~A~~lA~~-----~~~~~~~i~~~~~~~~~~L~~~~~~~ 800 (814)
T 3mkq_A 744 NAYWIA--------GDIQGAKDLLIKSQRFSEAAFLGST-----YGLGDNEVNDIVTKWKENLILNGKNT 800 (814)
T ss_dssp HHHHHH--------TCHHHHHHHHHHTTCHHHHHHHHHH-----TTCCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHc--------CCHHHHHHHHHHcCChHHHHHHHHH-----hCCChHHHHHHHHHHHHHHHhccchh
Confidence 555442 1233344555666677766665554 33334 4456666665555566544
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.61 E-value=0.6 Score=47.35 Aligned_cols=71 Identities=7% Similarity=0.045 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHhc----CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000176 1782 SCKVWLRRVQRLLKQ----QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1853 (1924)
Q Consensus 1782 ~~~vw~~~a~~l~~~----~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d 1853 (1924)
++..-++||-.+.+. +..++..+|+..++..|.. .-+.++.+|.-+++.|++++|+...+.+|+..|.+..
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~-~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 444555555445444 3445555555555554432 1355555555666666666666666666666665544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.67 E-value=2.2 Score=43.87 Aligned_cols=73 Identities=7% Similarity=0.049 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHhc----CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 000176 1781 HSCKVWLRRVQRLLKQ----QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL 1854 (1924)
Q Consensus 1781 ~~~~vw~~~a~~l~~~----~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dl 1854 (1924)
.+...-++||-.|.+. +..++..+|+..+...|.. .-+..+.+|.-+++.|+|++||...+.+|+..|.+..+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~-~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST-HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc-hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 4566666666666655 4556667777777666543 24667777777777777777777777777777776554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.75 E-value=1.8 Score=57.16 Aligned_cols=55 Identities=5% Similarity=-0.038 Sum_probs=29.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 000176 1821 ISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLF 1875 (1924)
Q Consensus 1821 ~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lf 1875 (1924)
+..-|.|+...|+++-|..+-.+++...|....-|..++..|++.|+++.|.-.+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtL 394 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAI 394 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHH
Confidence 3334445555555555555555555555555555555555555555555554433
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.31 E-value=18 Score=44.91 Aligned_cols=98 Identities=9% Similarity=0.027 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCchhH
Q 000176 1819 KFISQTAILEFKNGVADRGRSMFEGILSEY----PK--RTDLWSIYLDQEIRLGDVDLIRGLFERAIS----LSLPPKKM 1888 (1924)
Q Consensus 1819 ~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~----Pk--~~dlw~~y~~le~k~gd~~~ar~lferal~----~~~~pk~~ 1888 (1924)
.+...+|.+++..|++.+|..++..+.... ++ ..++|..-++++...+|+.+|+.++.++.. ...+|.-.
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 556667777777777777777777765421 11 133566666666677777777777776532 11222222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1889 KFLFKKYLEYEKSVGEEERIEYVKQKAM 1916 (1924)
Q Consensus 1889 k~lw~~yl~~E~~~G~~~~~~~v~~rAl 1916 (1924)
-.++..++.+....+++.+|-..|..+.
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1233333334444456655555554443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=88.78 E-value=3.5 Score=55.40 Aligned_cols=130 Identities=13% Similarity=0.095 Sum_probs=88.1
Q ss_pred HHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHH
Q 000176 1757 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1835 (1924)
Q Consensus 1757 ~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e 1835 (1924)
.++.+.|+++.|.++.+. .+++..|..+|+.+++. +++.|..+|.++= + +.....++...|+.+
T Consensus 660 ~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~-----d-----~~~l~~l~~~~~~~~ 724 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNAH-----D-----LESLFLLHSSFNNKE 724 (814)
T ss_dssp HHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-----C-----HHHHHHHHHHTTCHH
T ss_pred ehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc-----C-----hhhhHHHHHHcCCHH
Confidence 345678999999887543 36889999999999999 9999999999872 1 334445555688888
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHH----HHHHH
Q 000176 1836 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE----RIEYV 1911 (1924)
Q Consensus 1836 ~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~----~~~~v 1911 (1924)
....+-+.+... .+ +.....++.+.|++++|.++|...-. |..-+.+-+.++..+ .+...
T Consensus 725 ~~~~~~~~a~~~-~~----~~~A~~~~~~~g~~~~a~~~~~~~~~-----------~~~A~~lA~~~~~~~~~i~~~~~~ 788 (814)
T 3mkq_A 725 GLVTLAKDAETT-GK----FNLAFNAYWIAGDIQGAKDLLIKSQR-----------FSEAAFLGSTYGLGDNEVNDIVTK 788 (814)
T ss_dssp HHHHHHHHHHHT-TC----HHHHHHHHHHHTCHHHHHHHHHHTTC-----------HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-Cc----hHHHHHHHHHcCCHHHHHHHHHHcCC-----------hHHHHHHHHHhCCChHHHHHHHHH
Confidence 766665554432 22 22233456678999999999876322 666666777787554 44444
Q ss_pred HHHHHH
Q 000176 1912 KQKAME 1917 (1924)
Q Consensus 1912 ~~rAle 1917 (1924)
+...|+
T Consensus 789 ~~~~L~ 794 (814)
T 3mkq_A 789 WKENLI 794 (814)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=88.19 E-value=2.1 Score=43.40 Aligned_cols=86 Identities=13% Similarity=0.038 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHH
Q 000176 1798 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV---ADRGRSMFEGILSEYP-KRTDLWSIYLDQEIRLGDVDLIRG 1873 (1924)
Q Consensus 1798 ~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~---~e~Ar~lfe~aL~~~P-k~~dlw~~y~~le~k~gd~~~ar~ 1873 (1924)
....++-|.+=+ ..+...++...||..+.+..+ ..+|..+++.+++..| .+.+.|+.++--+.+.|++++||.
T Consensus 23 L~~l~~qy~~E~---~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~ 99 (134)
T 3o48_A 23 LEILRQQVVSEG---GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKR 99 (134)
T ss_dssp HHHHHHHHHHTT---GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHh---CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHH
Confidence 344445554433 233345888999988887664 5689999999999999 467889999999999999999999
Q ss_pred HHHHHHhcCCCchhH
Q 000176 1874 LFERAISLSLPPKKM 1888 (1924)
Q Consensus 1874 lferal~~~~~pk~~ 1888 (1924)
..++++. ..|.+.
T Consensus 100 y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 100 YVDTLFE--HERNNK 112 (134)
T ss_dssp HHHHHHT--TCTTCH
T ss_pred HHHHHHh--hCCCCH
Confidence 9999999 666544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.48 E-value=3.5 Score=55.55 Aligned_cols=116 Identities=9% Similarity=-0.058 Sum_probs=90.1
Q ss_pred CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC--CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHH
Q 000176 1780 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL--PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE-YPKRTDLW 1855 (1924)
Q Consensus 1780 ~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~--p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~-~Pk~~dlw 1855 (1924)
......|..+.+.+.+. +.++|.++|.++-... .-...+..|..+..-+.+.|++++|+.+|+..... ..-+.-.|
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33455688889999988 9999999998865321 01123578999999999999999999999998765 33356778
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 000176 1856 SIYLDQEIRLGD-VDLIRGLFERAISLSLPPKKMKFLFKKYLE 1897 (1924)
Q Consensus 1856 ~~y~~le~k~gd-~~~ar~lferal~~~~~pk~~k~lw~~yl~ 1897 (1924)
+.+++-+.+.|. .+.|..+|+......+.|+.. ++.-.+.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~v--tY~~ll~ 244 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL--FTAVLLS 244 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHH--HHHSCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChh--hcccccC
Confidence 889999999987 578999999999988998765 5554443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.26 E-value=9.9 Score=47.38 Aligned_cols=172 Identities=10% Similarity=0.020 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----cCCC-
Q 000176 1675 SFVWIKYMAFMLSMADVEKARSIAERALQT-INIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ----YCDP- 1748 (1924)
Q Consensus 1675 ~~~W~~y~~~~~~~~e~dkAr~v~eraL~~-i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~----~~~~- 1748 (1924)
..++..++..++..|++.+|..+....+.. ...-+..+++.+|+.-+.++...++ ...|...++++.. ..++
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d--~~~a~~~~~ki~~~~~~~~~~~ 214 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGD--YSQATVLSRKILKKTFKNPKYE 214 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhhcccCCcH
Confidence 456788999999999999999999887743 2333456778899999999999994 5999999998743 2222
Q ss_pred H---HHHHHHHHHHHHhCChHHHHHHHHHHHHhcC--CCHHHHHHHHH---HH-Hhc--CHHHHHHHHHHHHHhCCCCCh
Q 000176 1749 K---KVHLALLGLYERTEQNKLADELLYKMIKKFK--HSCKVWLRRVQ---RL-LKQ--QQEGVQAVVQRALLSLPRHKH 1817 (1924)
Q Consensus 1749 ~---~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~--~~~~vw~~~a~---~l-~~~--~~~~A~~l~~ral~~~p~~~~ 1817 (1924)
. ..+..++.++...++|.+|...|..+...+. .++.-|..... ++ +-. ..+. ..++.+... .+....
T Consensus 215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~-~~ll~~~~~-~~~~~~ 292 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQ-NDLIHKIQN-DNNLKK 292 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTT-HHHHHSHHH-HSSCHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchH-HHHHHHHhh-cccccc
Confidence 1 6788888899999999999999999987662 34444432111 11 111 1111 112222221 222234
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCC
Q 000176 1818 IKFISQTAILEFKN--GVADRGRSMFEGILSEYPK 1850 (1924)
Q Consensus 1818 ~~~~~~~A~le~~~--g~~e~Ar~lfe~aL~~~Pk 1850 (1924)
+..+..++..+... .+++.....|+..|..+|.
T Consensus 293 l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~ 327 (445)
T 4b4t_P 293 LESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDL 327 (445)
T ss_dssp HHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCS
T ss_pred cHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccch
Confidence 56667777766643 3677777778777766553
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=86.44 E-value=3.2 Score=42.67 Aligned_cols=86 Identities=13% Similarity=0.018 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 000176 1798 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV---ADRGRSMFEGILSEYPK-RTDLWSIYLDQEIRLGDVDLIRG 1873 (1924)
Q Consensus 1798 ~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~---~e~Ar~lfe~aL~~~Pk-~~dlw~~y~~le~k~gd~~~ar~ 1873 (1924)
....++-|.+-+. .....++...||..+.+..+ ..+|..+|+.+++..|. +.+..+.++--+++.|++++||.
T Consensus 22 L~~lr~qY~~E~~---~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~ 98 (144)
T 1y8m_A 22 LEILRQQVVSEGG---PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKR 98 (144)
T ss_dssp HHHHHHHHHHTTS---TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHhcc---CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHH
Confidence 4445555554322 23346899999999987764 56899999999999995 56677777888899999999999
Q ss_pred HHHHHHhcCCCchhH
Q 000176 1874 LFERAISLSLPPKKM 1888 (1924)
Q Consensus 1874 lferal~~~~~pk~~ 1888 (1924)
..+++|. ..|.+.
T Consensus 99 y~d~lL~--~eP~n~ 111 (144)
T 1y8m_A 99 YVDTLFE--HERNNK 111 (144)
T ss_dssp HHHHHHH--TCCCCH
T ss_pred HHHHHHh--cCCCcH
Confidence 9999999 665443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.05 E-value=3 Score=44.04 Aligned_cols=25 Identities=8% Similarity=-0.045 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 000176 1819 KFISQTAILEFKNGVADRGRSMFEG 1843 (1924)
Q Consensus 1819 ~~~~~~A~le~~~g~~e~Ar~lfe~ 1843 (1924)
++.++.|..+.+.++++.|..+++.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 4445555555555555555555554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.61 E-value=5.4 Score=53.82 Aligned_cols=96 Identities=9% Similarity=-0.025 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHh-cCCCHHHHHH
Q 000176 1715 NIWVAYFNLENEYGNPPEEAVVKVFQRALQ-----YCDPKKVHLALLGLYERTEQNKLADELLYKMIKK-FKHSCKVWLR 1788 (1924)
Q Consensus 1715 ~lWiayl~le~~~g~~~~e~a~~vferAl~-----~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~-~~~~~~vw~~ 1788 (1924)
.-+.++++.+...| ..++|..+|++.-+ ..|+--.|..+++-|.+.|+.++|.++|+.|... +..+.-.|..
T Consensus 128 ~TynaLIdglcK~G--~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 128 QRLLAFFKCCLLTD--QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHT--CHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHhCC--CHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 35677888888888 67999999977543 3566789999999999999999999999999875 4677888888
Q ss_pred HHHHHHhc-C-HHHHHHHHHHHHHhC
Q 000176 1789 RVQRLLKQ-Q-QEGVQAVVQRALLSL 1812 (1924)
Q Consensus 1789 ~a~~l~~~-~-~~~A~~l~~ral~~~ 1812 (1924)
+...+-+. + .++|.++|++|...-
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 88888777 4 678889999998764
|
| >2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A | Back alignment and structure |
|---|
Probab=85.00 E-value=1.1 Score=56.02 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=47.0
Q ss_pred CCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEec
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lsl 1527 (1924)
++|+.+.|.| |++. +..|++|++++..+ -.....|+.||.|+++|.++|+.+++|.+..
T Consensus 402 ~~g~~f~g~v---------v~l~--~~~glV~v~~l~~d--~~~~~~~~lGd~V~V~v~~vd~~~~~i~f~~ 460 (469)
T 2r7d_A 402 QPERVWDAVV---------VDRR--GAQATLLIPDLAFD--VQVNTPAAPGTALQVQFADIDLPQMRVRARS 460 (469)
T ss_dssp CTTCCEEEEE---------EEEE--TTEEEEEEGGGTEE--EEEECCCCTTCEEEEEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEE---------EEEe--CcEEEEEECCCCeE--EecCCcCCCCCEEEEEEEEEccCCCEEEEEE
Confidence 6899898865 4454 35799999999765 2234679999999999999999999998753
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=84.73 E-value=6 Score=48.39 Aligned_cols=102 Identities=14% Similarity=0.136 Sum_probs=77.8
Q ss_pred HHhCChHHHHHHHHHHHHhcCCC--H----HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC
Q 000176 1760 ERTEQNKLADELLYKMIKKFKHS--C----KVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1833 (1924)
Q Consensus 1760 ~~~gk~e~A~~~fe~~lk~~~~~--~----~vw~~~a~~l~~~~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~ 1833 (1924)
...++.+.|.+.+.+++..|... + .-|.. ..+.-|++.. ..+...++..+...|+
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~-----------~~r~~l~~~~--------~~a~~~~~~~~l~~g~ 186 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVE-----------PFATALVEDK--------VLAHTAKAEAEIACGR 186 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHH-----------HHHHHHHHHH--------HHHHHHHHHHHHHTTC
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHH-----------HHHHHHHHHH--------HHHHHHHHHHHHHCCC
Confidence 34688999999999999988422 1 11221 1122222221 2455667888889999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1834 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1834 ~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
+++|...+++++..+|-+..+|..++..+.+.|+...|...|+++-.
T Consensus 187 ~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 187 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988765
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.57 E-value=6.4 Score=41.58 Aligned_cols=91 Identities=11% Similarity=0.054 Sum_probs=54.7
Q ss_pred HHHHHHHhc-CHHHHHHHHHHHHHhC---CC----CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC------
Q 000176 1788 RRVQRLLKQ-QQEGVQAVVQRALLSL---PR----HKHIKFISQTAILEFKNGVADRGRSMFEGILSEY---PK------ 1850 (1924)
Q Consensus 1788 ~~a~~l~~~-~~~~A~~l~~ral~~~---p~----~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~---Pk------ 1850 (1924)
..+..++.. .++.|+-+...++... |. ..+.+++..||+.+|..+++-+|...|+++|+.. |+
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 333444444 5566655555544332 11 1123466666666666666666666666665321 11
Q ss_pred ----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000176 1851 ----------------RTDLWSIYLDQEIRLGDVDLIRGLFERA 1878 (1924)
Q Consensus 1851 ----------------~~dlw~~y~~le~k~gd~~~ar~lfera 1878 (1924)
..++-+..+..+++.++++.|..+++.+
T Consensus 105 ~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 105 STGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 2357777888899999999999998863
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.72 E-value=23 Score=37.91 Aligned_cols=43 Identities=19% Similarity=0.175 Sum_probs=21.6
Q ss_pred HhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHH
Q 000176 1761 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRA 1808 (1924)
Q Consensus 1761 ~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ra 1808 (1924)
+.|+++.|.++.+.+ ++...|..+++..+.+ +++-|...|+++
T Consensus 17 ~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344555555544332 3455555555555555 555555555544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.74 E-value=5.3 Score=52.79 Aligned_cols=110 Identities=7% Similarity=-0.013 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHH--HHhC-ChHHHHHHHHHHHHhc------------------CCCHHHHHHHHH
Q 000176 1733 EAVVKVFQRALQYCDPKKVHLALLGLY--ERTE-QNKLADELLYKMIKKF------------------KHSCKVWLRRVQ 1791 (1924)
Q Consensus 1733 e~a~~vferAl~~~~~~~i~~~l~~i~--~~~g-k~e~A~~~fe~~lk~~------------------~~~~~vw~~~a~ 1791 (1924)
+.|...|++..+..|...++++.+.+. ...+ +--+|..+...+++.+ +....+...-+.
T Consensus 266 ~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~ 345 (754)
T 4gns_B 266 DFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTN 345 (754)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHH
Confidence 667777777777766655544433332 2221 2234455554444321 111234555677
Q ss_pred HHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000176 1792 RLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGI 1844 (1924)
Q Consensus 1792 ~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~a 1844 (1924)
|++.. +++-|..+-++|+.+.|.. ...|..+|..|...|++|.|.-.+..+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPse--F~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDS--FESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSC--HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcCchh--hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 88888 9999999999999999887 689999999999999999998776655
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.07 E-value=7.4 Score=48.31 Aligned_cols=102 Identities=14% Similarity=0.156 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC----H-
Q 000176 1675 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP----K- 1749 (1924)
Q Consensus 1675 ~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~----~- 1749 (1924)
..++..++.++.+.|++++|.++|.++...... ...++.+|+..+.+....+++ ..+...+++|-..... .
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~--~~~kid~~l~~irl~l~~~d~--~~~~~~~~ka~~~~~~~~d~~~ 206 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS--TGAKIDVMLTIARLGFFYNDQ--LYVKEKLEAVNSMIEKGGDWER 206 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC--CCSHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHTTCCCTHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHhhhcCCCHHH
Confidence 346788999999999999999999999986654 345789999999999999954 9999999999765432 1
Q ss_pred --HHHHHHHHHHHHhCChHHHHHHHHHHHHhcC
Q 000176 1750 --KVHLALLGLYERTEQNKLADELLYKMIKKFK 1780 (1924)
Q Consensus 1750 --~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~ 1780 (1924)
.+....+.++...++|..|...|-.++..|.
T Consensus 207 ~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 207 RNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 3444455566678999999999999888774
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1924 | ||||
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 1e-31 | |
| d3bzka4 | 94 | b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas ae | 2e-17 | |
| d3bzka4 | 94 | b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas ae | 1e-13 | |
| d3bzka4 | 94 | b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas ae | 3e-11 | |
| d3bzka4 | 94 | b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas ae | 5e-11 | |
| d3bzka4 | 94 | b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas ae | 2e-08 | |
| d3bzka4 | 94 | b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas ae | 6e-07 | |
| d3bzka4 | 94 | b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas ae | 6e-04 | |
| d3bzka4 | 94 | b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas ae | 0.002 | |
| d3bzka4 | 94 | b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas ae | 0.002 | |
| d1sroa_ | 76 | b.40.4.5 (A:) S1 RNA-binding domain of polyribonuc | 1e-16 | |
| d1sroa_ | 76 | b.40.4.5 (A:) S1 RNA-binding domain of polyribonuc | 6e-14 | |
| d1sroa_ | 76 | b.40.4.5 (A:) S1 RNA-binding domain of polyribonuc | 8e-10 | |
| d1sroa_ | 76 | b.40.4.5 (A:) S1 RNA-binding domain of polyribonuc | 8e-09 | |
| d1sroa_ | 76 | b.40.4.5 (A:) S1 RNA-binding domain of polyribonuc | 2e-07 | |
| d1sroa_ | 76 | b.40.4.5 (A:) S1 RNA-binding domain of polyribonuc | 3e-06 | |
| d1sroa_ | 76 | b.40.4.5 (A:) S1 RNA-binding domain of polyribonuc | 0.001 | |
| d1kl9a2 | 86 | b.40.4.5 (A:3-88) Eukaryotic initiation factor 2al | 2e-14 | |
| d1kl9a2 | 86 | b.40.4.5 (A:3-88) Eukaryotic initiation factor 2al | 2e-08 | |
| d1kl9a2 | 86 | b.40.4.5 (A:3-88) Eukaryotic initiation factor 2al | 1e-06 | |
| d1kl9a2 | 86 | b.40.4.5 (A:3-88) Eukaryotic initiation factor 2al | 4e-06 | |
| d1kl9a2 | 86 | b.40.4.5 (A:3-88) Eukaryotic initiation factor 2al | 9e-06 | |
| d1kl9a2 | 86 | b.40.4.5 (A:3-88) Eukaryotic initiation factor 2al | 2e-05 | |
| d2ahob2 | 84 | b.40.4.5 (B:1-84) Eukaryotic initiation factor 2al | 4e-14 | |
| d2ahob2 | 84 | b.40.4.5 (B:1-84) Eukaryotic initiation factor 2al | 3e-07 | |
| d2ahob2 | 84 | b.40.4.5 (B:1-84) Eukaryotic initiation factor 2al | 1e-06 | |
| d2ahob2 | 84 | b.40.4.5 (B:1-84) Eukaryotic initiation factor 2al | 1e-06 | |
| d2ahob2 | 84 | b.40.4.5 (B:1-84) Eukaryotic initiation factor 2al | 1e-05 | |
| d2ahob2 | 84 | b.40.4.5 (B:1-84) Eukaryotic initiation factor 2al | 2e-04 | |
| d2ahob2 | 84 | b.40.4.5 (B:1-84) Eukaryotic initiation factor 2al | 0.002 | |
| d2z0sa1 | 88 | b.40.4.5 (A:60-147) S1-domain of exosome complex R | 5e-13 | |
| d2z0sa1 | 88 | b.40.4.5 (A:60-147) S1-domain of exosome complex R | 1e-07 | |
| d2z0sa1 | 88 | b.40.4.5 (A:60-147) S1-domain of exosome complex R | 2e-05 | |
| d2z0sa1 | 88 | b.40.4.5 (A:60-147) S1-domain of exosome complex R | 2e-05 | |
| d2z0sa1 | 88 | b.40.4.5 (A:60-147) S1-domain of exosome complex R | 3e-04 | |
| d1wi5a_ | 119 | b.40.4.5 (A:) S1-domain of RRP5 protein homolog (P | 6e-13 | |
| d1wi5a_ | 119 | b.40.4.5 (A:) S1-domain of RRP5 protein homolog (P | 2e-09 | |
| d1wi5a_ | 119 | b.40.4.5 (A:) S1-domain of RRP5 protein homolog (P | 2e-06 | |
| d1wi5a_ | 119 | b.40.4.5 (A:) S1-domain of RRP5 protein homolog (P | 2e-04 | |
| d1wi5a_ | 119 | b.40.4.5 (A:) S1-domain of RRP5 protein homolog (P | 6e-04 | |
| d1wi5a_ | 119 | b.40.4.5 (A:) S1-domain of RRP5 protein homolog (P | 7e-04 | |
| d1e3pa2 | 62 | b.40.4.5 (A:656-717) S1 RNA-binding domain of poly | 2e-12 | |
| d1e3pa2 | 62 | b.40.4.5 (A:656-717) S1 RNA-binding domain of poly | 3e-07 | |
| d1e3pa2 | 62 | b.40.4.5 (A:656-717) S1 RNA-binding domain of poly | 1e-06 | |
| d1e3pa2 | 62 | b.40.4.5 (A:656-717) S1 RNA-binding domain of poly | 3e-04 | |
| d2je6i1 | 87 | b.40.4.5 (I:66-152) S1-domain of exosome complex R | 1e-11 | |
| d2je6i1 | 87 | b.40.4.5 (I:66-152) S1-domain of exosome complex R | 6e-07 | |
| d2je6i1 | 87 | b.40.4.5 (I:66-152) S1-domain of exosome complex R | 4e-05 | |
| d2je6i1 | 87 | b.40.4.5 (I:66-152) S1-domain of exosome complex R | 4e-05 | |
| d2je6i1 | 87 | b.40.4.5 (I:66-152) S1-domain of exosome complex R | 2e-04 | |
| d2ba0a1 | 83 | b.40.4.5 (A:53-135) S1-domain of exosome complex R | 4e-11 | |
| d2ba0a1 | 83 | b.40.4.5 (A:53-135) S1-domain of exosome complex R | 1e-07 | |
| d2ba0a1 | 83 | b.40.4.5 (A:53-135) S1-domain of exosome complex R | 3e-05 | |
| d2ba0a1 | 83 | b.40.4.5 (A:53-135) S1-domain of exosome complex R | 4e-05 | |
| d2ba0a1 | 83 | b.40.4.5 (A:53-135) S1-domain of exosome complex R | 7e-04 | |
| d2ba0a1 | 83 | b.40.4.5 (A:53-135) S1-domain of exosome complex R | 0.002 | |
| d1go3e1 | 106 | b.40.4.5 (E:79-184) C-terminal domain of RNA polym | 1e-10 | |
| d1y14b1 | 91 | b.40.4.5 (B:81-171) C-terminal domain of RNA polym | 5e-10 | |
| d1y14b1 | 91 | b.40.4.5 (B:81-171) C-terminal domain of RNA polym | 0.002 | |
| d2ix0a3 | 87 | b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Esche | 8e-10 | |
| d2ix0a3 | 87 | b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Esche | 0.002 | |
| d2nn6h1 | 95 | b.40.4.5 (H:73-167) S1-domain of Ribosomal RNA-pro | 4e-09 | |
| d2nn6g1 | 88 | b.40.4.5 (G:107-194) S1-domain of exosome componen | 4e-07 | |
| d2c35b1 | 94 | b.40.4.5 (B:78-171) C-terminal domain of RNA polym | 4e-07 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-06 | |
| d2ja9a1 | 90 | b.40.4.5 (A:62-151) S1-domain of exosome component | 2e-05 | |
| d1hh2p1 | 72 | b.40.4.5 (P:127-198) S1 domain of NusA {Thermotoga | 9e-05 | |
| d2nn6i1 | 125 | b.40.4.5 (I:61-185) Exosome component 1, EXOSC1 {H | 0.004 |
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 125 bits (313), Expect = 1e-31
Identities = 42/284 (14%), Positives = 105/284 (36%), Gaps = 39/284 (13%)
Query: 1660 TPDEFERLVRSSPNSSFVWIKYMAFMLS--------MADVEKARSIAERALQTINIREEN 1711
TP E +++ +W KY+ + S ++ E+ L + +
Sbjct: 1 TPQEAQQVD--------MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPD- 51
Query: 1712 EKLNIWVAYFNLENEYGNPPE------------EAVVKVFQRALQYCDPK--KVHLALLG 1757
IW + + +++RA+ K ++ A
Sbjct: 52 ----IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYAD 107
Query: 1758 LYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRH 1815
E + + + +++ V+++ ++ + + + + + ++A
Sbjct: 108 YEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR 167
Query: 1816 KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLF 1875
H+ +++ + + + +FE L +Y + Y+D L + + R LF
Sbjct: 168 HHV-YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLF 226
Query: 1876 ERAI-SLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918
ER + S SLPP+K ++ ++L +E ++G+ I V+++
Sbjct: 227 ERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270
|
| >d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Tex S1-domain species: Pseudomonas aeruginosa [TaxId: 287]
Score = 77.2 bits (190), Expect = 2e-17
Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 1442 RTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1500
+TA E + +L +L G ++ G + V ++G F+ I + GL H+S LSE V +
Sbjct: 2 KTAEFQEGVESLKDLKPGMVLEGVVTNVTNFGAFVDIGV-HQDGLVHISALSEKFVKDPY 60
Query: 1501 TIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
+ +AG+ VKVK+++VD + R+ L M+ S
Sbjct: 61 EVVKAGDIVKVKVMEVDIPRNRVGLSMRMS 90
|
| >d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Tex S1-domain species: Pseudomonas aeruginosa [TaxId: 287]
Score = 66.1 bits (161), Expect = 1e-13
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
K + F+ V + D+KPGMV++G V V +FGA V L + +SE + P +
Sbjct: 2 KTAEFQEGVESLKDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYE 61
Query: 542 KFKVGAELVFRVLGV--KSKRITVTHKKT 568
K G + +V+ V R+ ++ + +
Sbjct: 62 VVKAGDIVKVKVMEVDIPRNRVGLSMRMS 90
|
| >d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Tex S1-domain species: Pseudomonas aeruginosa [TaxId: 287]
Score = 59.1 bits (143), Expect = 3e-11
Identities = 27/85 (31%), Positives = 51/85 (60%)
Query: 1357 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1416
+ +E ++DL P M+++G V NVT+ G F+ + D V +S LS+ +V+ P + G
Sbjct: 8 EGVESLKDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGD 67
Query: 1417 LVAGRVLSVEPLSKRVEVTLKTSDS 1441
+V +V+ V+ RV ++++ SD+
Sbjct: 68 IVKVKVMEVDIPRNRVGLSMRMSDT 92
|
| >d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Tex S1-domain species: Pseudomonas aeruginosa [TaxId: 287]
Score = 58.7 bits (142), Expect = 5e-11
Identities = 18/77 (23%), Positives = 31/77 (40%)
Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
+ P V+ G V N+ G FV G S + D + G V+ +
Sbjct: 14 KDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKV 73
Query: 817 LDVNSETGRITLSLKQS 833
++V+ R+ LS++ S
Sbjct: 74 MEVDIPRNRVGLSMRMS 90
|
| >d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Tex S1-domain species: Pseudomonas aeruginosa [TaxId: 287]
Score = 51.4 bits (123), Expect = 2e-08
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
+ G +T + G FV G S L +P + G +VK ++M
Sbjct: 21 VLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPR 80
Query: 648 RRINLSFMMKPT 659
R+ LS M+ +
Sbjct: 81 NRVGLS--MRMS 90
|
| >d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Tex S1-domain species: Pseudomonas aeruginosa [TaxId: 287]
Score = 47.2 bits (112), Expect = 6e-07
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
+ G ++ G ++ + + G V IG H G VH + L V DP G VK KV
Sbjct: 16 LKPGMVLEGVVTNVTNF--GAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKV 73
Query: 1317 LEISRTVRGTFHVELSLRSS 1336
+E+ V LS+R S
Sbjct: 74 MEVDIPRN---RVGLSMRMS 90
|
| >d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Tex S1-domain species: Pseudomonas aeruginosa [TaxId: 287]
Score = 38.7 bits (90), Expect = 6e-04
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 315 SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN 374
S+ L PGM++ V ++ G + + G V I L F ++ V
Sbjct: 12 SLKDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEV-VKAGDIVK 70
Query: 375 ARILFVDPTSRAVGLTL 391
+++ VD VGL++
Sbjct: 71 VKVMEVDIPRNRVGLSM 87
|
| >d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Tex S1-domain species: Pseudomonas aeruginosa [TaxId: 287]
Score = 37.2 bits (86), Expect = 0.002
Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 865 ELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD-----VYGFITHHQLAGATVESGSV 919
++ ++ G V+EG V +FG V H D + V++G +
Sbjct: 9 GVESLKDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDI 68
Query: 920 IQAAILDVAKAERLVDLSLK 939
++ +++V V LS++
Sbjct: 69 VKVKVMEVDIPRNRVGLSMR 88
|
| >d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Tex S1-domain species: Pseudomonas aeruginosa [TaxId: 287]
Score = 36.8 bits (85), Expect = 0.002
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 14/93 (15%)
Query: 127 TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTI 186
+LK++ GM L GVV V + + GL + + + + E +
Sbjct: 12 SLKDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAG----- 66
Query: 187 FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
+V V+++D + ++ LS+R+S
Sbjct: 67 ----DIVKVKVMEVDIP-----RNRVGLSMRMS 90
|
| >d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]} Length = 76 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase species: Escherichia coli [TaxId: 562]
Score = 74.0 bits (182), Expect = 1e-16
Identities = 23/78 (29%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
+ + VG + G++ R+ +G F+ I GL H+S++++ V+ + + G++V VK
Sbjct: 1 AEIEVGRVYTGKVTRIVDFGAFVAIGG-GKEGLVHISQIADKRVEKVTDYLQMGQEVPVK 59
Query: 1513 ILKVDKEKRRISLGMKSS 1530
+L+VD++ RI L +K +
Sbjct: 60 VLEVDRQG-RIRLSIKEA 76
|
| >d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]} Length = 76 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase species: Escherichia coli [TaxId: 562]
Score = 66.3 bits (162), Expect = 6e-14
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
++++ G V GKV + FGA V GG + L + +++ + K ++G E+ +V
Sbjct: 1 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKV 60
Query: 554 LGV-KSKRITVTHKK 567
L V + RI ++ K+
Sbjct: 61 LEVDRQGRIRLSIKE 75
|
| >d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]} Length = 76 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase species: Escherichia coli [TaxId: 562]
Score = 54.8 bits (132), Expect = 8e-10
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
+ I V G V I++ G FV G G S+ D + ++ +GQ V +
Sbjct: 1 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKV 60
Query: 817 LDVNSETGRITLSLKQS 833
L+V+ + GRI LS+K++
Sbjct: 61 LEVDRQ-GRIRLSIKEA 76
|
| >d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]} Length = 76 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase species: Escherichia coli [TaxId: 562]
Score = 52.1 bits (125), Expect = 8e-09
Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1423
++ + G V + G F+ + + V +S ++D VE +G+ V +VL
Sbjct: 2 EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVL 61
Query: 1424 SVEPLSKRVEVTLK 1437
V+ R+ +++K
Sbjct: 62 EVDR-QGRIRLSIK 74
|
| >d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]} Length = 76 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase species: Escherichia coli [TaxId: 562]
Score = 47.8 bits (114), Expect = 2e-07
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
+ G +T+I G FV G +G S++ + + +GQ V +++ +
Sbjct: 8 VYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVL-EVDRQ 66
Query: 648 RRINLS 653
RI LS
Sbjct: 67 GRIRLS 72
|
| >d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]} Length = 76 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase species: Escherichia coli [TaxId: 562]
Score = 44.8 bits (106), Expect = 3e-06
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
I G + G++++I+ G V IG G VH +++ + V GQ V KV
Sbjct: 3 IEVGRVYTGKVTRIVDF--GAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKV 60
Query: 1317 LEISRTVRGTFHVELSLRSS 1336
LE+ R R + LS++ +
Sbjct: 61 LEVDRQGR----IRLSIKEA 76
|
| >d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]} Length = 76 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase species: Escherichia coli [TaxId: 562]
Score = 37.1 bits (86), Expect = 0.001
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
VG + ++T I + G G G +HI+++ D + VE + ++GQ V +++
Sbjct: 5 VGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKR---VEKVTDYLQMGQEVPVKVL 61
|
| >d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.1 bits (166), Expect = 2e-14
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 1457 VGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1515
V D+V+ ++ + G ++++ N+ G+ +SELS + +I + R G V +++
Sbjct: 13 VEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIR 72
Query: 1516 VDKEKRRISLGMK 1528
VDKEK I L +
Sbjct: 73 VDKEKGYIDLSKR 85
|
| >d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.1 bits (122), Expect = 2e-08
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 761 PNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
VV V +I E G +V L + G S+ + ++K +G++ ++
Sbjct: 13 VEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIR 72
Query: 819 VNSETGRITLSLKQ 832
V+ E G I LS ++
Sbjct: 73 VDKEKGYIDLSKRR 86
|
| >d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.1 bits (109), Expect = 1e-06
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFP--GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
+ VV V ++ GA V ++ + L +S I K ++G V+
Sbjct: 12 EVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVI 71
Query: 555 GV--KSKRITVTHKK 567
V + I ++ ++
Sbjct: 72 RVDKEKGYIDLSKRR 86
|
| >d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.6 bits (105), Expect = 4e-06
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 588 ITHGWITKIEKHGCFVRF--YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 645
+ + I + G +V YN ++G SEL + + +G+ ++
Sbjct: 16 VVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDK 75
Query: 646 ASRRINLS 653
I+LS
Sbjct: 76 EKGYIDLS 83
|
| >d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (102), Expect = 9e-06
Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 1367 PNMIVQGYVKNVTSKGCFIMLSR--KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
+V V+++ G ++ L ++ +LLS LS + S K IG+ V+
Sbjct: 13 VEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIR 72
Query: 1425 VEPLSKRVEVTLK 1437
V+ ++++ +
Sbjct: 73 VDKEKGYIDLSKR 85
|
| >d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.3 bits (99), Expect = 2e-05
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 874 IGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA-------GATVESGSVIQAAILD 926
+ V+ V + G VS E++++ G I +L+ + G ++
Sbjct: 13 VEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIR 72
Query: 927 VAKAERLVDLSLK 939
V K + +DLS +
Sbjct: 73 VDKEKGYIDLSKR 85
|
| >d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain species: Sulfolobus solfataricus [TaxId: 2287]
Score = 67.3 bits (164), Expect = 4e-14
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 1457 VGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1515
G+I+I +K+V YG +++++ L SE+S V NI + + KV VK+++
Sbjct: 11 EGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIR 70
Query: 1516 VDKEKRRISLGMK 1528
VD+ K + + +K
Sbjct: 71 VDRRKGTVDVSLK 83
|
| >d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain species: Sulfolobus solfataricus [TaxId: 2287]
Score = 47.7 bits (113), Expect = 3e-07
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 761 PNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
++ V + + G +V G L F P S+ ++ + V ++
Sbjct: 11 EGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIR 70
Query: 819 VNSETGRITLSLKQ 832
V+ G + +SLK+
Sbjct: 71 VDRRKGTVDVSLKK 84
|
| >d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain species: Sulfolobus solfataricus [TaxId: 2287]
Score = 46.2 bits (109), Expect = 1e-06
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFP--GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
G ++ V V +G+ V GG++A P +S + K +++ +V+
Sbjct: 10 SEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVI 69
Query: 555 GV--KSKRITVTHKK 567
V + + V+ KK
Sbjct: 70 RVDRRKGTVDVSLKK 84
|
| >d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain species: Sulfolobus solfataricus [TaxId: 2287]
Score = 45.8 bits (108), Expect = 1e-06
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 588 ITHGWITKIEKHGCFVRF--YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 645
I + ++ +G +V Y G+Q F P SE+ + + V +++
Sbjct: 14 ILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDR 73
Query: 646 ASRRINLS 653
+++S
Sbjct: 74 RKGTVDVS 81
|
| >d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain species: Sulfolobus solfataricus [TaxId: 2287]
Score = 43.1 bits (101), Expect = 1e-05
Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 874 IGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILD 926
G ++ V + D+G VS +E+ + F+ +++ V++ + ++
Sbjct: 11 EGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIR 70
Query: 927 VAKAERLVDLSLK 939
V + + VD+SLK
Sbjct: 71 VDRRKGTVDVSLK 83
|
| >d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain species: Sulfolobus solfataricus [TaxId: 2287]
Score = 40.0 bits (93), Expect = 2e-04
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 1367 PNMIVQGYVKNVTSKGCFIMLSRK--LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
I+ VK V G ++ L L A + S +S +V++ + V +V+
Sbjct: 11 EGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIR 70
Query: 1425 VEPLSKRVEVTLK 1437
V+ V+V+LK
Sbjct: 71 VDRRKGTVDVSLK 83
|
| >d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain species: Sulfolobus solfataricus [TaxId: 2287]
Score = 36.5 bits (84), Expect = 0.002
Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPH--LYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
EG+I+ + ++ G V + + L + ++E+ + V + E + V KV
Sbjct: 11 EGEILIATVKQVFD--YGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKV 68
Query: 1317 LEISRTVRGTFHVELSLR 1334
+ + R V++SL+
Sbjct: 69 IRVDRRKG---TVDVSLK 83
|
| >d2z0sa1 b.40.4.5 (A:60-147) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Length = 88 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Aeropyrum pernix [TaxId: 56636]
Score = 64.1 bits (156), Expect = 5e-13
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV----DNIETIYRAGEKVKVK 1512
GD+VIG I+ V F+ I + V + V + D+++++ + G+ +K K
Sbjct: 7 AGDVVIGLIQSVGIMNWFVDINS-PYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAK 65
Query: 1513 ILKVDKEKRRISLGMKS 1529
++ DK R L ++
Sbjct: 66 VVAFDKT-RSPLLTVQG 81
|
| >d2z0sa1 b.40.4.5 (A:60-147) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Length = 88 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Aeropyrum pernix [TaxId: 56636]
Score = 48.7 bits (116), Expect = 1e-07
Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 5/75 (6%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS----EFEIVKPGKKFKVGAELVFR 552
+ G VV G + +V V A+ + + KVG + +
Sbjct: 6 QAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAK 65
Query: 553 VLGV-KSKRITVTHK 566
V+ K++ +T +
Sbjct: 66 VVAFDKTRSPLLTVQ 80
|
| >d2z0sa1 b.40.4.5 (A:60-147) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Length = 88 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Aeropyrum pernix [TaxId: 56636]
Score = 43.0 bits (101), Expect = 2e-05
Identities = 8/78 (10%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES----PEKEFPIGKLVAGRV 1422
+V G +++V F+ ++ A + + + + +G + +V
Sbjct: 7 AGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKV 66
Query: 1423 LSVEPLSKRVEVTLKTSD 1440
++ + ++ +T++
Sbjct: 67 VAFDK-TRSPLLTVQGEG 83
|
| >d2z0sa1 b.40.4.5 (A:60-147) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Length = 88 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Aeropyrum pernix [TaxId: 56636]
Score = 42.6 bits (100), Expect = 2e-05
Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 10/81 (12%)
Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL----KNICVSDPLSGYDEGQFVKC 1314
GD+V G I + V I + + N V D S G ++K
Sbjct: 7 AGDVVIGLIQSVGIM--NWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKA 64
Query: 1315 KVLEISRTVRGTFHVELSLRS 1335
KV+ +T L+++
Sbjct: 65 KVVAFDKTRS----PLLTVQG 81
|
| >d2z0sa1 b.40.4.5 (A:60-147) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Length = 88 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Aeropyrum pernix [TaxId: 56636]
Score = 39.5 bits (92), Expect = 3e-04
Identities = 10/76 (13%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS----KAVDGQRADLSKTYYVGQSVRSNI 816
VV G + ++ FV + + D+ VG +++ +
Sbjct: 7 AGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKV 66
Query: 817 LDVNSETGRITLSLKQ 832
+ + +T L+++
Sbjct: 67 VAFD-KTRSPLLTVQG 81
|
| >d1wi5a_ b.40.4.5 (A:) S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) {Human (Homo sapiens) [TaxId: 9606]} Length = 119 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.1 bits (158), Expect = 6e-13
Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 4/108 (3%)
Query: 1444 ASQSEIN---NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED-HVDNI 1499
+S +N + L G ++ G + +E +G + I + + E N
Sbjct: 5 SSGKNVNRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNK 64
Query: 1500 ETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEES 1547
+ G+ + + KV +SL + S Q S +
Sbjct: 65 GAKLKVGQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNN 112
|
| >d1wi5a_ b.40.4.5 (A:) S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) {Human (Homo sapiens) [TaxId: 9606]} Length = 119 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.1 bits (132), Expect = 2e-09
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 223 KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPG 277
+ LS E ++ GM+LT V S+EDHGY++ G+ FLP E +K G
Sbjct: 12 RVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVG 71
Query: 278 LLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLL 319
L +V + VV LS VS + + + +++ L
Sbjct: 72 QYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNL 113
|
| >d1wi5a_ b.40.4.5 (A:) S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) {Human (Homo sapiens) [TaxId: 9606]} Length = 119 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (109), Expect = 2e-06
Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 4/100 (4%)
Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFP-GGVKALCPLPHMS-EFEIVKPGKKFKVGA 547
V + +KPGM++ G V +++ G +V G +A PL G K KVG
Sbjct: 13 VLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQ 72
Query: 548 ELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATD 585
L V V ++++ + V + +A +
Sbjct: 73 YLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNN 112
|
| >d1wi5a_ b.40.4.5 (A:) S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) {Human (Homo sapiens) [TaxId: 9606]} Length = 119 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (95), Expect = 2e-04
Identities = 17/95 (17%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Query: 1361 KIEDLSPNMIVQGYVKNVTSKGCFIMLS-RKLDAKVLLSNLSDGY-VESPEKEFPIGKLV 1418
E L P M++ G V ++ G + + A + L + ++ + +G+ +
Sbjct: 15 SAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYL 74
Query: 1419 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS 1453
V V+ V +++ S+ TA +E + +
Sbjct: 75 NCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWN 109
|
| >d1wi5a_ b.40.4.5 (A:) S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) {Human (Homo sapiens) [TaxId: 9606]} Length = 119 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (91), Expect = 6e-04
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
Query: 755 DASHIHPNSVVHGYVCNIIETGCFVRFL-GRLTGFAPRSK-AVDGQRADLSKTYYVGQSV 812
A + P ++ G V ++ + G V F P K ++ + VGQ +
Sbjct: 15 SAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYL 74
Query: 813 RSNILDVNSETGRITLSLKQSCCSSTDAS 841
+ V G ++LS+ S S+ A+
Sbjct: 75 NCIVEKVKGNGGVVSLSVGHSEVSTAIAT 103
|
| >d1wi5a_ b.40.4.5 (A:) S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) {Human (Homo sapiens) [TaxId: 9606]} Length = 119 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (90), Expect = 7e-04
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 588 ITHGWITKIEKHGCFVRF-YNGVQGFAPRSELGLDP-GCEPSSMYHVGQVVKCRIMSSIP 645
+ G ++ +E HG V +G + F P + + VGQ + C +
Sbjct: 24 LLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKG 83
Query: 646 ASRRINLSFMMKPTRVSE 663
++LS + + VS
Sbjct: 84 NGGVVSLS--VGHSEVST 99
|
| >d1e3pa2 b.40.4.5 (A:656-717) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Streptomyces antibioticus [TaxId: 1890]} Length = 62 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase species: Streptomyces antibioticus [TaxId: 1890]
Score = 62.0 bits (151), Expect = 2e-12
Identities = 16/63 (25%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 1463 GQIKRVESYGLFITIENTNLVGLCHVSELSED----HVDNIETIYRAGEKVKVKILKVDK 1518
G + + ++G F+++ GL H+S++ + V+N+E + G+KV+V+I ++D
Sbjct: 1 GSVVKTTTFGAFVSLLP-GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDS 59
Query: 1519 EKR 1521
+
Sbjct: 60 RGK 62
|
| >d1e3pa2 b.40.4.5 (A:656-717) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Streptomyces antibioticus [TaxId: 1890]} Length = 62 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase species: Streptomyces antibioticus [TaxId: 1890]
Score = 47.0 bits (112), Expect = 3e-07
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 504 GKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE----IVKPGKKFKVGAELVFRVLGVKSK 559
G V+ +FGA V G L + + + + VG ++ + + S+
Sbjct: 1 GSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSR 60
Query: 560 R 560
Sbjct: 61 G 61
|
| >d1e3pa2 b.40.4.5 (A:656-717) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Streptomyces antibioticus [TaxId: 1890]} Length = 62 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase species: Streptomyces antibioticus [TaxId: 1890]
Score = 45.1 bits (107), Expect = 1e-06
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE----PSSMYHVGQVVKCRIMS 642
G + K G FV G G S++ G + + VGQ V+ I
Sbjct: 1 GSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAE 56
|
| >d1e3pa2 b.40.4.5 (A:656-717) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Streptomyces antibioticus [TaxId: 1890]} Length = 62 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase species: Streptomyces antibioticus [TaxId: 1890]
Score = 38.5 bits (90), Expect = 3e-04
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY----VESPEKEFPIGKLVAGRVLSVEPL 1428
G V T+ G F+ L D + +S + VE+ E +G+ V + ++
Sbjct: 1 GSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSR 60
Query: 1429 SK 1430
K
Sbjct: 61 GK 62
|
| >d2je6i1 b.40.4.5 (I:66-152) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Length = 87 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Sulfolobus solfataricus [TaxId: 2287]
Score = 60.0 bits (145), Expect = 1e-11
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET---IYRAGEKVKVKI 1513
+ DIVIG ++ VE YG + I+ S L ++ E G+ V +I
Sbjct: 7 INDIVIGLVEDVEIYGWVVDIKA-PYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARI 65
Query: 1514 LKVDKEKRRISLGMKS 1529
D+ L +K
Sbjct: 66 ENFDRSI-DPVLSVKG 80
|
| >d2je6i1 b.40.4.5 (I:66-152) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Length = 87 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Sulfolobus solfataricus [TaxId: 2287]
Score = 46.9 bits (111), Expect = 6e-07
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV---KPGKKFKVGAELVFRV 553
K +V G V V+ +G +V KA P ++ I + VG ++ R+
Sbjct: 6 KINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARI 65
Query: 554 LGV-KSKRITVTHK 566
+S ++ K
Sbjct: 66 ENFDRSIDPVLSVK 79
|
| >d2je6i1 b.40.4.5 (I:66-152) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Length = 87 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Sulfolobus solfataricus [TaxId: 2287]
Score = 41.9 bits (98), Expect = 4e-05
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE---SPEKEFPIGKLVAGRVL 1423
N IV G V++V G + + A + SNL + + +G V R+
Sbjct: 7 INDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIE 66
Query: 1424 SVEPLSKRVEVTLKTSD 1440
+ + S +++K D
Sbjct: 67 NFDR-SIDPVLSVKGKD 82
|
| >d2je6i1 b.40.4.5 (I:66-152) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Length = 87 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Sulfolobus solfataricus [TaxId: 2287]
Score = 41.9 bits (98), Expect = 4e-05
Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 9/80 (11%)
Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVS---DPLSGYDEGQFVKCK 1315
DIV G + + G VV I + + L ++ D D G +V +
Sbjct: 7 INDIVIGLVEDVEIY--GWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIAR 64
Query: 1316 VLEISRTVRGTFHVELSLRS 1335
+ R++ LS++
Sbjct: 65 IENFDRSID----PVLSVKG 80
|
| >d2je6i1 b.40.4.5 (I:66-152) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Length = 87 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Sulfolobus solfataricus [TaxId: 2287]
Score = 40.0 bits (93), Expect = 2e-04
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 4/75 (5%)
Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPR---SKAVDGQRADLSKTYYVGQSVRSNIL 817
N +V G V ++ G V + P DL + VG V + I
Sbjct: 7 INDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIE 66
Query: 818 DVNSETGRITLSLKQ 832
+ + + LS+K
Sbjct: 67 NFD-RSIDPVLSVKG 80
|
| >d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 83 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 58.9 bits (142), Expect = 4e-11
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILK 1515
VGD+VIG I+ V + G + I + VSE + G+ + K+L
Sbjct: 5 VGDVVIGIIREVAANGWAVDIYS-PYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLN 63
Query: 1516 VDKEKRRISLGMKS 1529
+D + +++L MK
Sbjct: 64 IDPKM-KVTLTMKD 76
|
| >d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 83 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 48.8 bits (116), Expect = 1e-07
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS-EFEIVKPGKKFKVGAELVFRVLG 555
G VV G + V + G V +A P+ KP + +G ++ +VL
Sbjct: 4 SVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLN 63
Query: 556 V-KSKRITVTHK 566
+ ++T+T K
Sbjct: 64 IDPKMKVTLTMK 75
|
| >d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 83 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 42.3 bits (99), Expect = 3e-05
Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG-YVESPEKEFPIGKLVAGRVLSV 1425
+V G ++ V + G + + A + +S + + P + IG + +VL++
Sbjct: 5 VGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNI 64
Query: 1426 EPLSKRVEVTLKTSDSR 1442
+P +V +T+K R
Sbjct: 65 DP-KMKVTLTMKDRICR 80
|
| >d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 83 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 41.5 bits (97), Expect = 4e-05
Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDV 819
VV G + + G V F P S+ ++ +G ++ + +L++
Sbjct: 5 VGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNI 64
Query: 820 NSETGRITLSLKQ 832
+ ++TL++K
Sbjct: 65 D-PKMKVTLTMKD 76
|
| >d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 83 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 38.1 bits (88), Expect = 7e-04
Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 321 PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV 380
G +V ++ + NG + + + + + P + + A++L +
Sbjct: 5 VGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNI 64
Query: 381 DPTSRAVGLTL 391
DP + V LT+
Sbjct: 65 DPKMK-VTLTM 74
|
| >d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 83 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 36.9 bits (85), Expect = 0.002
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC-VSDPLSGYDEGQFVKCKVL 1317
GD+V G I ++ + G V I + +E + P D G + KVL
Sbjct: 5 VGDVVIGIIREVAAN--GWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVL 62
Query: 1318 EISRTVRGTFHVELSLRSSLDG 1339
I ++ V L+++ +
Sbjct: 63 NIDPKMK----VTLTMKDRICR 80
|
| >d1go3e1 b.40.4.5 (E:79-184) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 58.1 bits (140), Expect = 1e-10
Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 18/88 (20%)
Query: 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE-----------TIYRA 1505
+ +++ G++ V +G F+ + L GL HVS++ +D+V +
Sbjct: 3 MYELIEGEVVDVVEFGSFVRLG--PLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEI 60
Query: 1506 GEKVKVKILKVDKEKRR-----ISLGMK 1528
G+ V+ +I+ + + R I+L M+
Sbjct: 61 GDYVRARIVAISLKAERKRGSKIALTMR 88
|
| >d1y14b1 b.40.4.5 (B:81-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.0 bits (135), Expect = 5e-10
Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 14/87 (16%)
Query: 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV----------DNIETIYRAG 1506
G++V G + +G + + + +D + E +
Sbjct: 3 KGEVVDGTVVSCSQHGFEVQVGPMK--VFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIK 60
Query: 1507 EKVKVKILKVDKEKRRISL--GMKSSY 1531
+++VKI + I +K Y
Sbjct: 61 SRIRVKIEGCISQVSSIHAIGSIKEDY 87
|
| >d1y14b1 b.40.4.5 (B:81-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.1 bits (86), Expect = 0.002
Identities = 12/77 (15%), Positives = 21/77 (27%), Gaps = 11/77 (14%)
Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA----------DLSKTYYVGQS 811
VV G V + + G V+ +G + F + +
Sbjct: 4 GEVVDGTVVSCSQHGFEVQ-VGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSR 62
Query: 812 VRSNILDVNSETGRITL 828
+R I S+ I
Sbjct: 63 IRVKIEGCISQVSSIHA 79
|
| >d2ix0a3 b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} Length = 87 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Exoribonuclease 2, RNB species: Escherichia coli [TaxId: 562]
Score = 55.2 bits (133), Expect = 8e-10
Identities = 12/82 (14%), Positives = 24/82 (29%), Gaps = 12/82 (14%)
Query: 1456 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH------------VDNIETIY 1503
+I + G+ + + + + L ET+Y
Sbjct: 2 GTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVY 61
Query: 1504 RAGEKVKVKILKVDKEKRRISL 1525
+ + + V I +V E R I
Sbjct: 62 KVTDVIDVTIAEVRMETRSIIA 83
|
| >d2ix0a3 b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} Length = 87 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Exoribonuclease 2, RNB species: Escherichia coli [TaxId: 562]
Score = 37.1 bits (86), Expect = 0.002
Identities = 16/73 (21%), Positives = 22/73 (30%), Gaps = 13/73 (17%)
Query: 591 GWITKIEKHGCFVRF-YNGVQGFAPRSELG------------LDPGCEPSSMYHVGQVVK 637
I I + G VR NG F P L + ++Y V V+
Sbjct: 9 AEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVID 68
Query: 638 CRIMSSIPASRRI 650
I +R I
Sbjct: 69 VTIAEVRMETRSI 81
|
| >d2nn6h1 b.40.4.5 (H:73-167) S1-domain of Ribosomal RNA-processing protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of Ribosomal RNA-processing protein 4, RRP4 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.4 bits (128), Expect = 4e-09
Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS----------EDHVDNIETIYRAG 1506
VGDIV+G+I V+ + N+ L + +S ++ + + + G
Sbjct: 8 VGDIVVGRITEVQQKRWKVET-NSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEG 66
Query: 1507 EKVKVKILKVDKEKRRISLGMKS 1529
+ + ++ V + +SL +S
Sbjct: 67 DLISAEVQAVFSDG-AVSLHTRS 88
|
| >d2nn6g1 b.40.4.5 (G:107-194) S1-domain of exosome component 3 (RRP40) {Human (Homo sapiens) [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome component 3 (RRP40) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (113), Expect = 4e-07
Identities = 8/79 (10%), Positives = 22/79 (27%), Gaps = 3/79 (3%)
Query: 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1516
GD VIG + + + + + G+ + + +
Sbjct: 6 KGDHVIGIVTAKSGDIFKVDV-GGSEPASLSYLSFEG-ATKRNRPNVQVGDLIYGQFVVA 63
Query: 1517 DKEKRRISLGMKSSYFKND 1535
+K+ + S + +
Sbjct: 64 NKDM-EPEMVCIDSCGRAN 81
|
| >d2c35b1 b.40.4.5 (B:78-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.6 bits (113), Expect = 4e-07
Identities = 11/84 (13%), Positives = 29/84 (34%), Gaps = 14/84 (16%)
Query: 1456 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV------------DNIETIY 1503
G++V + +V GLF I + + + + + +
Sbjct: 3 FKGEVVDAVVTQVNKVGLFTEIGP--MSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVI 60
Query: 1504 RAGEKVKVKILKVDKEKRRISLGM 1527
+ +++++KI+ +K I
Sbjct: 61 QQDDEIRLKIVGTRVDKNDIFAIG 84
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (116), Expect = 4e-06
Identities = 29/218 (13%), Positives = 70/218 (32%), Gaps = 7/218 (3%)
Query: 1664 FERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL 1723
+ + + + PN + W + ++ A E+A+ ++ + +N+
Sbjct: 158 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT-LDPNFLDAYINLGNVLKEA 216
Query: 1724 ENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSC 1783
+ AV + + VH L +Y LA + + I+ H
Sbjct: 217 RI-----FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP 271
Query: 1784 KVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEG 1843
+ LK++ +A H ++ A ++ + G + ++
Sbjct: 272 DAYCNLAN-ALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK 330
Query: 1844 ILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1881
L +P+ S + G + ++ AI +
Sbjct: 331 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368
|
| >d2ja9a1 b.40.4.5 (A:62-151) S1-domain of exosome component 3 (RRP40) {Saccharomyces cerevisiae [TaxId: 4932]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome component 3 (RRP40) species: Saccharomyces cerevisiae [TaxId: 4932]
Score = 42.9 bits (101), Expect = 2e-05
Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 2/74 (2%)
Query: 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1516
V D VIG I S +++ + + + G+ V ++
Sbjct: 7 VNDFVIGVIIGTFSDSYKVSL-QNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTA 65
Query: 1517 DKEKRRISLGMKSS 1530
+KE + S
Sbjct: 66 EKE-LEAEIECFDS 78
|
| >d1hh2p1 b.40.4.5 (P:127-198) S1 domain of NusA {Thermotoga maritima [TaxId: 2336]} Length = 72 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 domain of NusA species: Thermotoga maritima [TaxId: 2336]
Score = 40.4 bits (95), Expect = 9e-05
Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 8/65 (12%)
Query: 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1516
G + ++ RV I I E +AG+ VKV I+ V
Sbjct: 8 KGTVTTAEVIRVMGEWADIRIGKLETR--LPKKEWIPGEE------IKAGDLVKVYIIDV 59
Query: 1517 DKEKR 1521
K +
Sbjct: 60 VKTTK 64
|
| >d2nn6i1 b.40.4.5 (I:61-185) Exosome component 1, EXOSC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Exosome component 1, EXOSC1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.2 bits (86), Expect = 0.004
Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 9/82 (10%)
Query: 1457 VGDIVIGQIKR-------VESYGLFITIENTNLVGLCHVSEL--SEDHVDNIETIYRAGE 1507
VG IV ++ V + + G ++ +E I +R G+
Sbjct: 7 VGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGD 66
Query: 1508 KVKVKILKVDKEKRRISLGMKS 1529
V K++ + + L
Sbjct: 67 IVLAKVISLGDAQSNYLLTTAE 88
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1924 | |||
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.9 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.82 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.69 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.68 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.67 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.62 | |
| d1sroa_ | 76 | S1 RNA-binding domain of polyribonucleotide phosph | 99.57 | |
| d1sroa_ | 76 | S1 RNA-binding domain of polyribonucleotide phosph | 99.53 | |
| d1kl9a2 | 86 | Eukaryotic initiation factor 2alpha, eIF2alpha, N- | 99.49 | |
| d3bzka4 | 94 | Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287] | 99.49 | |
| d1wi5a_ | 119 | S1-domain of RRP5 protein homolog (PDCD11, KIAA018 | 99.48 | |
| d2ahob2 | 84 | Eukaryotic initiation factor 2alpha, eIF2alpha, N- | 99.47 | |
| d3bzka4 | 94 | Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287] | 99.47 | |
| d1kl9a2 | 86 | Eukaryotic initiation factor 2alpha, eIF2alpha, N- | 99.44 | |
| d2ahob2 | 84 | Eukaryotic initiation factor 2alpha, eIF2alpha, N- | 99.4 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.37 | |
| d2ba0a1 | 83 | S1-domain of exosome complex RNA-binding protein 1 | 99.29 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.29 | |
| d1wi5a_ | 119 | S1-domain of RRP5 protein homolog (PDCD11, KIAA018 | 99.29 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.25 | |
| d2ba0a1 | 83 | S1-domain of exosome complex RNA-binding protein 1 | 99.24 | |
| d2je6i1 | 87 | S1-domain of exosome complex RNA-binding protein 1 | 99.23 | |
| d1go3e1 | 106 | C-terminal domain of RNA polymerase II subunit RBP | 99.23 | |
| d2z0sa1 | 88 | S1-domain of exosome complex RNA-binding protein 1 | 99.2 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.11 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.11 | |
| d2je6i1 | 87 | S1-domain of exosome complex RNA-binding protein 1 | 99.11 | |
| d1go3e1 | 106 | C-terminal domain of RNA polymerase II subunit RBP | 99.11 | |
| d2z0sa1 | 88 | S1-domain of exosome complex RNA-binding protein 1 | 99.09 | |
| d1e3pa2 | 62 | S1 RNA-binding domain of polyribonucleotide phosph | 99.05 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.03 | |
| d1e3pa2 | 62 | S1 RNA-binding domain of polyribonucleotide phosph | 98.99 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.96 | |
| d2ix0a3 | 87 | Exoribonuclease 2, RNB {Escherichia coli [TaxId: 5 | 98.87 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.84 | |
| d2nn6h1 | 95 | S1-domain of Ribosomal RNA-processing protein 4, R | 98.84 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.81 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.79 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.73 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.69 | |
| d1y14b1 | 91 | C-terminal domain of RNA polymerase II subunit RBP | 98.67 | |
| d2nn6h1 | 95 | S1-domain of Ribosomal RNA-processing protein 4, R | 98.65 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.63 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.59 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.57 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.56 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.56 | |
| d2c35b1 | 94 | C-terminal domain of RNA polymerase II subunit RBP | 98.55 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.55 | |
| d2ix0a3 | 87 | Exoribonuclease 2, RNB {Escherichia coli [TaxId: 5 | 98.54 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.49 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.46 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.45 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.44 | |
| d1y14b1 | 91 | C-terminal domain of RNA polymerase II subunit RBP | 98.38 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.33 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.32 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.3 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.3 | |
| d2c35b1 | 94 | C-terminal domain of RNA polymerase II subunit RBP | 98.24 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.19 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.19 | |
| d2nn6g1 | 88 | S1-domain of exosome component 3 (RRP40) {Human (H | 98.18 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.16 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.15 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.13 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.12 | |
| d2nn6g1 | 88 | S1-domain of exosome component 3 (RRP40) {Human (H | 98.12 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.02 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.98 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.93 | |
| d1hh2p1 | 72 | S1 domain of NusA {Thermotoga maritima [TaxId: 233 | 97.91 | |
| d2ja9a1 | 90 | S1-domain of exosome component 3 (RRP40) {Saccharo | 97.89 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.88 | |
| d2ja9a1 | 90 | S1-domain of exosome component 3 (RRP40) {Saccharo | 97.86 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.71 | |
| d1hh2p1 | 72 | S1 domain of NusA {Thermotoga maritima [TaxId: 233 | 97.69 | |
| d2nn6i1 | 125 | Exosome component 1, EXOSC1 {Human (Homo sapiens) | 97.55 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.54 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.5 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.49 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.47 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.44 | |
| d2asba1 | 76 | S1 domain of NusA {Mycobacterium tuberculosis [Tax | 97.39 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.38 | |
| d2asba1 | 76 | S1 domain of NusA {Mycobacterium tuberculosis [Tax | 97.23 | |
| d2nn6i1 | 125 | Exosome component 1, EXOSC1 {Human (Homo sapiens) | 97.19 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.11 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.06 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.04 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.48 | |
| d1smxa_ | 87 | S1-domain of Ribonuclease E {Escherichia coli [Tax | 96.03 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.93 | |
| d1smxa_ | 87 | S1-domain of Ribonuclease E {Escherichia coli [Tax | 95.26 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.99 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.13 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 88.19 | |
| d1k3ra1 | 71 | Hypothetical protein MTH1 (MT0001), insert domain | 81.6 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 81.2 |
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.90 E-value=1.4e-22 Score=242.74 Aligned_cols=240 Identities=15% Similarity=0.237 Sum_probs=209.4
Q ss_pred CHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCC------------CHH
Q 000176 1674 SSFVWIKYMAFMLSMA--------DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP------------PEE 1733 (1924)
Q Consensus 1674 s~~~W~~y~~~~~~~~--------e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~------------~~e 1733 (1924)
...+|+.|+.|....+ ..++++.+|+||+..+|... .+|+.|+.++...++. ..+
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~Rv~~vyerAl~~~~~~~-----~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (308)
T d2onda1 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHP-----DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 81 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHcCchHHHHHHHhhcccchH
Confidence 4579999999987643 25678889999999999765 4999999987654310 137
Q ss_pred HHHHHHHHHHhcCCC--HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhc-CHHHHHHHHHHHH
Q 000176 1734 AVVKVFQRALQYCDP--KKVHLALLGLYERTEQNKLADELLYKMIKKFKHS-CKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1809 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~--~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~-~~vw~~~a~~l~~~-~~~~A~~l~~ral 1809 (1924)
+|+.+|+||++..++ ..+|..|+.++...|+++.|+.+|+++++..+.+ ..+|..|+.++.+. .++.|+++|++|+
T Consensus 82 ~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al 161 (308)
T d2onda1 82 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 161 (308)
T ss_dssp HHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 899999999986443 4899999999999999999999999999987654 66899999999999 9999999999999
Q ss_pred HhCCCCChHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchh
Q 000176 1810 LSLPRHKHIKFISQTAILEFK-NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS-LPPKK 1887 (1924)
Q Consensus 1810 ~~~p~~~~~~~~~~~A~le~~-~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~-~~pk~ 1887 (1924)
+..|... .+|..+|.++.. .|+.++|+.+|++++..+|++.++|..|++++.+.|++++||.+|++|+... .+|..
T Consensus 162 ~~~~~~~--~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~ 239 (308)
T d2onda1 162 EDARTRH--HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 239 (308)
T ss_dssp TSTTCCT--HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred HhCCCcH--HHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH
Confidence 9999875 789999998875 5899999999999999999999999999999999999999999999999843 45555
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000176 1888 MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1888 ~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~ 1920 (1924)
...+|..|+.||..+|+.+.++.+++||.+...
T Consensus 240 ~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~ 272 (308)
T d2onda1 240 SGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 568999999999999999999999999988764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.82 E-value=1.8e-19 Score=215.39 Aligned_cols=213 Identities=16% Similarity=0.201 Sum_probs=192.6
Q ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------------CHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHH
Q 000176 1660 TPDEFERLVRSSPNSSFVWIKYMAFMLSMA--------------DVEKARSIAERALQTINIREENEKLNIWVAYFNLEN 1725 (1924)
Q Consensus 1660 a~~~ferll~~~P~s~~~W~~y~~~~~~~~--------------e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~ 1725 (1924)
....|+|+|...|.++.+|+.|+.|+...+ ..++|+.+|+||++..++.. ..+|..|+.++.
T Consensus 35 v~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~----~~l~~~ya~~~~ 110 (308)
T d2onda1 35 VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN----MLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHH
Confidence 345899999999999999999999986543 35899999999998755433 369999999999
Q ss_pred HcCCCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc--CHHHH
Q 000176 1726 EYGNPPEEAVVKVFQRALQYCDP--KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ--QQEGV 1801 (1924)
Q Consensus 1726 ~~g~~~~e~a~~vferAl~~~~~--~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~--~~~~A 1801 (1924)
..+ ..+.|+.+|+++++..|. ..+|..++.++.+.++++.|+++|+++++.++.+..+|..++.+.... +.+.|
T Consensus 111 ~~~--~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a 188 (308)
T d2onda1 111 SRM--KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTT--CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcc--cHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHH
Confidence 999 569999999999998875 479999999999999999999999999999999999999999887765 89999
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000176 1802 QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK----RTDLWSIYLDQEIRLGDVDLIRGLFER 1877 (1924)
Q Consensus 1802 ~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk----~~dlw~~y~~le~k~gd~~~ar~lfer 1877 (1924)
+.+|+++++.+|.+ ..+|..|++++...|++++||.+|+++++..|. ...+|..|+.+|..+|+.+.++.+++|
T Consensus 189 ~~i~e~~l~~~p~~--~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r 266 (308)
T d2onda1 189 FKIFELGLKKYGDI--PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhh--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999987 699999999999999999999999999998763 456999999999999999999999999
Q ss_pred HHh
Q 000176 1878 AIS 1880 (1924)
Q Consensus 1878 al~ 1880 (1924)
+..
T Consensus 267 ~~~ 269 (308)
T d2onda1 267 RFT 269 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 987
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=2e-15 Score=182.81 Aligned_cols=258 Identities=11% Similarity=0.039 Sum_probs=227.1
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhh---------------------
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE--------------------- 1712 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~e--------------------- 1712 (1924)
.++..+|...|++++..+|++..+|..++.++.+.|++++|...+++++...+......
T Consensus 46 ~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (388)
T d1w3ba_ 46 CRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125 (388)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 35578899999999999999999999999999999999999999999887655422110
Q ss_pred ------------------------------------------HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-
Q 000176 1713 ------------------------------------------KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK- 1749 (1924)
Q Consensus 1713 ------------------------------------------kl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~- 1749 (1924)
....|..+..+....+ ..+.|...++++++..|..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~p~~~ 203 (388)
T d1w3ba_ 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG--EIWLAIHHFEKAVTLDPNFL 203 (388)
T ss_dssp HHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHCTTCH
T ss_pred cccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccC--cHHHHHHHHHHHHHhCcccH
Confidence 0123334444555556 4589999999999998874
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
..|..++.+|...+++++|...|+++....+.....|..++..+.+. ++++|...|+++++..|.. ..+|..+|.++
T Consensus 204 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~ 281 (388)
T d1w3ba_ 204 DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF--PDAYCNLANAL 281 (388)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC--HHHHHHHHHHH
T ss_pred HHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999 9999999999999999877 58999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1908 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~ 1908 (1924)
...|++++|...|+.++...|.....|..++.++.+.|++++|...|++++. +.|+.. ..|..+.......|+.+.|
T Consensus 282 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~-~~~~~la~~~~~~g~~~~A 358 (388)
T d1w3ba_ 282 KEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFA-AAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTCH-HHHHHHHHHHHTTTCCHHH
T ss_pred HHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999999999999999999999999999999998 778877 5788888888899999999
Q ss_pred HHHHHHHHHH
Q 000176 1909 EYVKQKAMEY 1918 (1924)
Q Consensus 1909 ~~v~~rAle~ 1918 (1924)
...|++|++.
T Consensus 359 ~~~~~~al~l 368 (388)
T d1w3ba_ 359 LMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999999863
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=4.9e-15 Score=179.37 Aligned_cols=252 Identities=15% Similarity=0.152 Sum_probs=224.2
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
.++..+|...|++++..+|++..+|..++..+.+.|++++|...|+++++..|.. ...|..+..++...| +.+
T Consensus 12 ~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~a~~~l~~~~~~~g--~~~ 84 (388)
T d1w3ba_ 12 AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL-----AEAYSNLGNVYKERG--QLQ 84 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHT--CHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHhhhhc--ccc
Confidence 4567788999999999999999999999999999999999999999999887753 347888888888999 559
Q ss_pred HHHHHHHHHHhcCCC-----------------------------------------------------------------
Q 000176 1734 AVVKVFQRALQYCDP----------------------------------------------------------------- 1748 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~----------------------------------------------------------------- 1748 (1924)
+|...|+++++..+.
T Consensus 85 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T d1w3ba_ 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhcc
Confidence 999999988876542
Q ss_pred ----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHH
Q 000176 1749 ----KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQ 1823 (1924)
Q Consensus 1749 ----~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~ 1823 (1924)
...|..++.++...+++++|...+++++...|....+|..++..+... ++++|...|++++...|.. ...|..
T Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~ 242 (388)
T d1w3ba_ 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH--AVVHGN 242 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC--HHHHHH
T ss_pred CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhH--HHHHHH
Confidence 134555666778889999999999999999999999999999999999 9999999999999998776 588999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcC
Q 000176 1824 TAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVG 1903 (1924)
Q Consensus 1824 ~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G 1903 (1924)
+|..++..|++++|...|++++...|++.++|..++.++...|+++.|...|++++. ..|... ..|..+.......|
T Consensus 243 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~-~~~~~l~~~~~~~~ 319 (388)
T d1w3ba_ 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHA-DSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHTTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccc-hhhhHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999998 666666 57778888888899
Q ss_pred CHHHHHHHHHHHHH
Q 000176 1904 EEERIEYVKQKAME 1917 (1924)
Q Consensus 1904 ~~~~~~~v~~rAle 1917 (1924)
++++|...|++|++
T Consensus 320 ~~~~A~~~~~~al~ 333 (388)
T d1w3ba_ 320 NIEEAVRLYRKALE 333 (388)
T ss_dssp CHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=3e-15 Score=178.71 Aligned_cols=260 Identities=12% Similarity=0.037 Sum_probs=215.0
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
.++.++|...|++++..+|++..+|..++.++...+++++|...|++|++..|.. ...|..++......+ ..+
T Consensus 32 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~--~~~ 104 (323)
T d1fcha_ 32 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN-----QTALMALAVSFTNES--LQR 104 (323)
T ss_dssp TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccc-----ccccccccccccccc--ccc
Confidence 5678899999999999999999999999999999999999999999999877743 358999888888999 569
Q ss_pred HHHHHHHHHHhcCCCH----------H------HHHHHHHHHHHhCChHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHh
Q 000176 1734 AVVKVFQRALQYCDPK----------K------VHLALLGLYERTEQNKLADELLYKMIKKFKH--SCKVWLRRVQRLLK 1795 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~----------~------i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~--~~~vw~~~a~~l~~ 1795 (1924)
.|.+.|++++...|.. . .+...+..+...+.+.+|.+.|.+++...|. .+.+|..++..+..
T Consensus 105 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 184 (323)
T d1fcha_ 105 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL 184 (323)
T ss_dssp HHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred ccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 9999999999987652 1 1112222345567788999999999998764 57889999999999
Q ss_pred c-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 000176 1796 Q-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGL 1874 (1924)
Q Consensus 1796 ~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~l 1874 (1924)
. ++++|...|++++...|.. ..+|..+|.+++..|++++|...|+++++..|+..++|..++.++.+.|+++.|+..
T Consensus 185 ~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 262 (323)
T d1fcha_ 185 SGEYDKAVDCFTAALSVRPND--YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH 262 (323)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHhhhhccccccccccccc--ccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9 9999999999999999886 589999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCchhHH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhC
Q 000176 1875 FERAISLSLPPKKMK----------FLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924 (1924)
Q Consensus 1875 feral~~~~~pk~~k----------~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~~~~ 1924 (1924)
|++|+. +.|+... .+|..+-......|..+.+..+..|.++.+...|+
T Consensus 263 ~~~al~--l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~~~~~l~~l~~~~~ 320 (323)
T d1fcha_ 263 FLEALN--MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFG 320 (323)
T ss_dssp HHHHHH--HHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHTT
T ss_pred HHHHHH--hCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCHHHHHHHhC
Confidence 999998 4444332 24544333344456666667777777776666543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=3.1e-14 Score=169.70 Aligned_cols=237 Identities=16% Similarity=0.082 Sum_probs=205.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHH
Q 000176 1674 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVH 1752 (1924)
Q Consensus 1674 s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~ 1752 (1924)
+...|+..+..+++.|++++|...|+++++..|.. ...|..+..++...+ +.+.|...|++|++..|.. ..|
T Consensus 18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-----~~a~~~lg~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~ 90 (323)
T d1fcha_ 18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH-----MEAWQYLGTTQAENE--QELLAISALRRCLELKPDNQTAL 90 (323)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcC--ChHHHHHHHHhhhcccccccccc
Confidence 44557788888999999999999999999887753 347888888889999 5699999999999999874 999
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHH---------------HHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC
Q 000176 1753 LALLGLYERTEQNKLADELLYKMIKKFKHSCKVW---------------LRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1816 (1924)
Q Consensus 1753 ~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw---------------~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~ 1816 (1924)
..++.+|...+++++|.+.|++++...+.....+ ......+... .+.+|...|.+++...|...
T Consensus 91 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~ 170 (323)
T d1fcha_ 91 MALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSI 170 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred ccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999998776432221 1122223334 78889999999999999887
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000176 1817 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1896 (1924)
Q Consensus 1817 ~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl 1896 (1924)
...+|..+|.++...|++++|...|++++...|++..+|..++.++.+.|++++|...|++++. +.|... ..|..+.
T Consensus 171 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~-~a~~~lg 247 (323)
T d1fcha_ 171 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE--LQPGYI-RSRYNLG 247 (323)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHH
T ss_pred ccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHH--HhhccH-HHHHHHH
Confidence 7789999999999999999999999999999999999999999999999999999999999999 777777 5788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHH
Q 000176 1897 EYEKSVGEEERIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1897 ~~E~~~G~~~~~~~v~~rAle~v~ 1920 (1924)
......|+.++|...|++|+++-.
T Consensus 248 ~~~~~~g~~~~A~~~~~~al~l~p 271 (323)
T d1fcha_ 248 ISCINLGAHREAVEHFLEALNMQR 271 (323)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC
Confidence 888889999999999999998644
|
| >d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=9e-16 Score=140.80 Aligned_cols=76 Identities=30% Similarity=0.680 Sum_probs=71.8
Q ss_pred cccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1453 ~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
+++++|+++.|+|++|.+||+||+|.+ +++||||+||++|.+++++.+.|++||.|+|+|+++|+ ++||.||||++
T Consensus 1 ad~kvG~iv~G~V~~v~~~G~fV~l~~-~~~Glv~~sels~~~~~~~~~~~~~G~~v~v~Vi~id~-~~ri~LS~k~a 76 (76)
T d1sroa_ 1 AEIEVGRVYTGKVTRIVDFGAFVAIGG-GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEA 76 (76)
T ss_dssp CCCCTTSEEEEEEEEEETTEEEEECSS-SCCCBCCTTSSCSSCCSCHHHHCCTTCEEEEEEEECCT-TCCCEEEECCC
T ss_pred CCCCCCCEEEEEEEEEeCcEEEEEeCC-CCEEEEEhHHhCccccCCHHHccCCCCEEEEEEEEECC-CCCEEEEEEcC
Confidence 478999999999999999999999976 89999999999999999999999999999999999996 57999999974
|
| >d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=3.8e-15 Score=136.59 Aligned_cols=76 Identities=30% Similarity=0.480 Sum_probs=72.2
Q ss_pred CccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeeccc
Q 000176 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833 (1924)
Q Consensus 757 ~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~ 833 (1924)
+++++|+++.|+|++++++|+||+|.+++.||+|.+++++.+..+|++.|++||.|+|+|+++|+ ++|+.||||++
T Consensus 1 ad~kvG~iv~G~V~~v~~~G~fV~l~~~~~Glv~~sels~~~~~~~~~~~~~G~~v~v~Vi~id~-~~ri~LS~k~a 76 (76)
T d1sroa_ 1 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEA 76 (76)
T ss_dssp CCCCTTSEEEEEEEEEETTEEEEECSSSCCCBCCTTSSCSSCCSCHHHHCCTTCEEEEEEEECCT-TCCCEEEECCC
T ss_pred CCCCCCCEEEEEEEEEeCcEEEEEeCCCCEEEEEhHHhCccccCCHHHccCCCCEEEEEEEEECC-CCCEEEEEEcC
Confidence 46899999999999999999999999999999999999999999999999999999999999996 57999999974
|
| >d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=2.7e-14 Score=134.52 Aligned_cols=74 Identities=28% Similarity=0.523 Sum_probs=58.9
Q ss_pred CCCcEEEEEEEEeecceEEEEEecC-ceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEeccc
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~~-~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~ 1529 (1924)
++|++|.|+|+++.+||+||+|... +++||||+||++|.++.++.+.|++||.|+|+|+++|++++||.||+|+
T Consensus 12 ~~G~iv~G~V~~i~~~G~fV~l~~~~~i~G~i~~sels~~~~~~~~~~~~~Gd~v~~kV~~vd~~~~ki~LS~Kq 86 (86)
T d1kl9a2 12 EVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRR 86 (86)
T ss_dssp CTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTT
T ss_pred CCCCEEEEEEEEEeCCeEEEEEecCCCEEEEEEeeeccccccccceEEeecccEEEEEEEEEECCCCEEEEEeeC
Confidence 5899999999999999999999743 7999999999999999999999999999999999999999999999985
|
| >d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Tex S1-domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.49 E-value=2.1e-14 Score=137.46 Aligned_cols=81 Identities=22% Similarity=0.325 Sum_probs=77.7
Q ss_pred CCcCccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeeccc
Q 000176 754 SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833 (1924)
Q Consensus 754 ~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~ 833 (1924)
.+++++++|++++|+|++++++||||+|.+++.||+|.+++++.+..++++.|++||.|.|+|+++|++++|+.||+|++
T Consensus 11 e~~~~~k~G~iv~g~V~~v~~~G~~V~l~~~i~G~i~~~~ls~~~~~~~~~~~~vGq~v~~~V~~id~~~~~i~LS~K~~ 90 (94)
T d3bzka4 11 ESLKDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSMRMS 90 (94)
T ss_dssp CCGGGCCTTCEEEEEEEEEETTEEEEECSSSSCEEEEGGGGCSSCCSCHHHHCCTTCEEEEEEEEEETTTTEEEEESCTT
T ss_pred hHHhcCCCCCEEEEEEEEEECcEEEEEeCCCceEEeehhhhhcccccChhhhhccCcEEEEEEEEEECCCCEEEEEEecc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred c
Q 000176 834 C 834 (1924)
Q Consensus 834 ~ 834 (1924)
.
T Consensus 91 e 91 (94)
T d3bzka4 91 D 91 (94)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1wi5a_ b.40.4.5 (A:) S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=2.4e-14 Score=143.21 Aligned_cols=104 Identities=31% Similarity=0.461 Sum_probs=94.4
Q ss_pred chhhhccCCCcccccCCcEEEEEEeeeeceeEEEEecCCcceeeccCCCCCC-----CCCCccCCCcEEEEEEEEEcCCC
Q 000176 217 RLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTR 291 (1924)
Q Consensus 217 ~p~~vn~~l~~~~l~~g~~l~~~V~svedhG~ild~Gi~~~~gFl~~~~~~~-----~~~~~l~~G~~~~~~v~~~~~~~ 291 (1924)
.|.+||+.|+.++|.+||++.|.|++|+||||+|+||++++.||||..++.. .....|++||.+.|.|+++++..
T Consensus 6 ~~~~vn~~ls~~~l~~G~iv~G~V~~i~~~G~~V~lg~~~~~G~l~~~els~~~~~~~~~~~~~vGq~v~~~V~~vd~~~ 85 (119)
T d1wi5a_ 6 SGKNVNRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNG 85 (119)
T ss_dssp CCSCSSCCCCTTTCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTTS
T ss_pred cHHHHhhhcCHhhcCCCCEEEEEEEEEeccEEEEEEeccccceEEeHHHhccccccCCHHHhcccceEEEEEEEEEeCCC
Confidence 6899999999999999999999999999999999999999999999998652 11238999999999999999999
Q ss_pred cEEEEccCccccccccccCcccccccccC
Q 000176 292 KVVYLSSDPDTVSKCVTKDLKGISIDLLV 320 (1924)
Q Consensus 292 ~~v~ls~~~~~~~~~~~~~~~~~~~~~l~ 320 (1924)
+.+.||+.+..+.++..+..+.+++++|.
T Consensus 86 ~~i~LS~k~~~~~~~~~~~~~~~~~~~l~ 114 (119)
T d1wi5a_ 86 GVVSLSVGHSEVSTAIATEQQSWNLNNLS 114 (119)
T ss_dssp CEEEEECCCCCSCCCCCCSSCCCCCCCCC
T ss_pred CEEEEEecHHHhhhhhhhhhhccCccccc
Confidence 99999999999998888888888888764
|
| >d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.47 E-value=2.9e-14 Score=133.90 Aligned_cols=74 Identities=30% Similarity=0.568 Sum_probs=65.7
Q ss_pred CCCcEEEEEEEEeecceEEEEEec-CceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEeccc
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIEN-TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~-~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~ 1529 (1924)
++|+++.|+|++|.+||+||+|.. .+++||||.||++|.++.++.+.|++||.|+|+|+++|++++||.||+|+
T Consensus 10 ~~G~iv~G~V~~v~~~G~fV~l~~~~gi~Gli~~sels~~~~~~~~~~~~~G~~v~~kV~~vd~~~~~i~LS~Kq 84 (84)
T d2ahob2 10 SEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKK 84 (84)
T ss_dssp CTTCCCEEEEEEEETTEEEEEETTTTTEEEEECGGGCC-----CHHHHTCSSCEEECEEEEEETTTTEEEEESSS
T ss_pred CCCCEEEEEEEEEECCEEEEEECCcCCEEEEEEccccccccccccceEeecccEEEEEEEEEECCCCEEEEEEcC
Confidence 589999999999999999999974 38999999999999999999999999999999999999999999999985
|
| >d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Tex S1-domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.47 E-value=4.2e-14 Score=135.35 Aligned_cols=82 Identities=33% Similarity=0.574 Sum_probs=78.6
Q ss_pred hhhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeec
Q 000176 1359 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438 (1924)
Q Consensus 1359 ~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~ 1438 (1924)
+++++++++|+++.|+|+++.++|+||+|+++++|++|+++++|.++.+|.+.|++||.|+|+|+++|+++++|.||+|+
T Consensus 10 ie~~~~~k~G~iv~g~V~~v~~~G~~V~l~~~i~G~i~~~~ls~~~~~~~~~~~~vGq~v~~~V~~id~~~~~i~LS~K~ 89 (94)
T d3bzka4 10 VESLKDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSMRM 89 (94)
T ss_dssp CCCGGGCCTTCEEEEEEEEEETTEEEEECSSSSCEEEEGGGGCSSCCSCHHHHCCTTCEEEEEEEEEETTTTEEEEESCT
T ss_pred hhHHhcCCCCCEEEEEEEEEECcEEEEEeCCCceEEeehhhhhcccccChhhhhccCcEEEEEEEEEECCCCEEEEEEec
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 000176 1439 SD 1440 (1924)
Q Consensus 1439 ~~ 1440 (1924)
++
T Consensus 90 ~e 91 (94)
T d3bzka4 90 SD 91 (94)
T ss_dssp TC
T ss_pred cC
Confidence 64
|
| >d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.3e-13 Score=129.83 Aligned_cols=73 Identities=25% Similarity=0.347 Sum_probs=58.5
Q ss_pred CCCCEEEEEEEEEecCeEEEEEC--CCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeecc
Q 000176 760 HPNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832 (1924)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~--~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~ 832 (1924)
++|+++.|+|++++++|+||+|. +|+.||+|.++++|.+..+|.+.|++||.|+|+|+++|++++|+.||+|+
T Consensus 12 ~~G~iv~G~V~~i~~~G~fV~l~~~~~i~G~i~~sels~~~~~~~~~~~~~Gd~v~~kV~~vd~~~~ki~LS~Kq 86 (86)
T d1kl9a2 12 EVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRR 86 (86)
T ss_dssp CTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTT
T ss_pred CCCCEEEEEEEEEeCCeEEEEEecCCCEEEEEEeeeccccccccceEEeecccEEEEEEEEEECCCCEEEEEeeC
Confidence 47999999999999999999996 68999999999999999999999999999999999999999999999985
|
| >d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.40 E-value=1.6e-13 Score=128.66 Aligned_cols=73 Identities=19% Similarity=0.353 Sum_probs=65.3
Q ss_pred CCCCEEEEEEEEEecCeEEEEEC--CCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeecc
Q 000176 760 HPNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832 (1924)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~--~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~ 832 (1924)
++|+++.|+|++++++|+||+|. +|+.||+|.+++++.+..++.+.|++||+|+|+|+++|++++|+.||+|+
T Consensus 10 ~~G~iv~G~V~~v~~~G~fV~l~~~~gi~Gli~~sels~~~~~~~~~~~~~G~~v~~kV~~vd~~~~~i~LS~Kq 84 (84)
T d2ahob2 10 SEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKK 84 (84)
T ss_dssp CTTCCCEEEEEEEETTEEEEEETTTTTEEEEECGGGCC-----CHHHHTCSSCEEECEEEEEETTTTEEEEESSS
T ss_pred CCCCEEEEEEEEEECCEEEEEECCcCCEEEEEEccccccccccccceEeecccEEEEEEEEEECCCCEEEEEEcC
Confidence 47999999999999999999996 58999999999999999999999999999999999999999999999984
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1.7e-11 Score=145.68 Aligned_cols=186 Identities=9% Similarity=0.052 Sum_probs=125.4
Q ss_pred CCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000176 1656 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA-DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1734 (1924)
Q Consensus 1656 ~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~-e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~ 1734 (1924)
..++|...|+++|..+|++..+|...+..+...+ ++++|...++++++..|.. ...|.....+....|.+ ++
T Consensus 58 ~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~-----~~a~~~~~~~~~~l~~~--~e 130 (315)
T d2h6fa1 58 RSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN-----YQVWHHRRVLVEWLRDP--SQ 130 (315)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHTCC--TT
T ss_pred chHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhh-----hhHHHHHhHHHHhhccH--HH
Confidence 3667777777777777777777777777766655 4777777777777665532 24677666666667744 66
Q ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-------CHHHHHHHHH
Q 000176 1735 VVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-------QQEGVQAVVQ 1806 (1924)
Q Consensus 1735 a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-------~~~~A~~l~~ 1806 (1924)
|.+.|++|++..|. ..+|..++.++...+++++|.+.|++++...|.+..+|...+..+... .+++|...+.
T Consensus 131 Al~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~ 210 (315)
T d2h6fa1 131 ELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTL 210 (315)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHH
Confidence 77777777777665 377777777777777777777777777777777777777766655543 2566777777
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000176 1807 RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1851 (1924)
Q Consensus 1807 ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~ 1851 (1924)
++++..|.+ ..+|...+.++.. ...+++...++.++...|..
T Consensus 211 ~al~~~P~~--~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~ 252 (315)
T d2h6fa1 211 EMIKLVPHN--ESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSH 252 (315)
T ss_dssp HHHHHSTTC--HHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTC
T ss_pred HHHHhCCCc--hHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCc
Confidence 777777765 3566666655433 33566667777776666653
|
| >d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.29 E-value=2.7e-12 Score=119.93 Aligned_cols=74 Identities=30% Similarity=0.454 Sum_probs=68.0
Q ss_pred CCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCccc-ccCcccccCCCcEEEEEEEEEecCCCeeEEeccccc
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1531 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~-~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s~ 1531 (1924)
++||+|.|+|+++.++|+||+|.+ ++.||+|+||+++.. ..++.+.|++||.|+|+|+++|+ ++||.||||...
T Consensus 4 k~Gd~V~G~V~~v~~~g~~V~i~~-~~~g~l~~se~s~~~~~~~~~~~~~vGd~V~~kV~~vd~-~~~i~LS~k~~~ 78 (83)
T d2ba0a1 4 SVGDVVIGIIREVAANGWAVDIYS-PYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDP-KMKVTLTMKDRI 78 (83)
T ss_dssp CTTCEEEEEEEEECSSEEEEECSS-SSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECT-TCCEEEECCSSS
T ss_pred CCCCEEEEEEEEEECCEEEEecCC-CeeEEEecccccccccccChhhhcccccEEEEEEEEECC-CCCEEEEecCCC
Confidence 689999999999999999999976 899999999999865 67899999999999999999995 679999999853
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=2.2e-10 Score=135.91 Aligned_cols=204 Identities=11% Similarity=0.062 Sum_probs=177.4
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-
Q 000176 1670 SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP- 1748 (1924)
Q Consensus 1670 ~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~- 1748 (1924)
.+|+...++..+...+.+.+.+++|...+++|++..|.. ...|.....+....+. +.++|...|++|++.+|.
T Consensus 38 ~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~-----~~a~~~r~~~l~~l~~-~~~eal~~~~~al~~~p~~ 111 (315)
T d2h6fa1 38 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN-----YTVWHFRRVLLKSLQK-DLHEEMNYITAIIEEQPKN 111 (315)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHCTTC
T ss_pred cCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCC-----hHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHHHHhh
Confidence 356666777777777888899999999999999877743 3588888888777763 369999999999999987
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000176 1749 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1827 (1924)
Q Consensus 1749 ~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~l 1827 (1924)
..+|..++.++.+.|++++|.+.|+++++..|.+..+|..++..+... ++++|.+.|+++|+..|.+ ..+|...+.+
T Consensus 112 ~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n--~~a~~~r~~~ 189 (315)
T d2h6fa1 112 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN--NSVWNQRYFV 189 (315)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred hhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCcc--HHHHHHHHHH
Confidence 499999999999999999999999999999999999999999999999 9999999999999999988 5899999998
Q ss_pred HHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 000176 1828 EFKNGV------ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1882 (1924)
Q Consensus 1828 e~~~g~------~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~ 1882 (1924)
+...+. +++|...|.+++...|.+..+|.....++. ....+++...+++++...
T Consensus 190 l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~ 249 (315)
T d2h6fa1 190 ISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQ 249 (315)
T ss_dssp HHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHT
T ss_pred HHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhC
Confidence 887665 689999999999999999999998877654 445678889999988743
|
| >d1wi5a_ b.40.4.5 (A:) S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=1.6e-12 Score=129.85 Aligned_cols=81 Identities=22% Similarity=0.332 Sum_probs=75.7
Q ss_pred CcCccCCCCEEEEEEEEEecCeEEEEE-CCCeEEEecCCccCccc-ccCcccCCCCCCEEEEEEEEeeCCCCeEEEeecc
Q 000176 755 DASHIHPNSVVHGYVCNIIETGCFVRF-LGRLTGFAPRSKAVDGQ-RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832 (1924)
Q Consensus 755 ~~~~~~~G~~~~G~V~~i~~~G~fV~f-~~~l~Glv~~s~~s~~~-~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~ 832 (1924)
.++++++|++++|+|++|+++|+||+| ++++.||+|++++++.+ ..+|.+.|++||.|.|+|+++|++++|+.||+|+
T Consensus 15 s~~~l~~G~iv~G~V~~i~~~G~~V~lg~~~~~G~l~~~els~~~~~~~~~~~~~vGq~v~~~V~~vd~~~~~i~LS~k~ 94 (119)
T d1wi5a_ 15 SAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGH 94 (119)
T ss_dssp CTTTCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTTSCEEEEECCC
T ss_pred CHhhcCCCCEEEEEEEEEeccEEEEEEeccccceEEeHHHhccccccCCHHHhcccceEEEEEEEEEeCCCCEEEEEecH
Confidence 468899999999999999999999999 58999999999999865 6789999999999999999999999999999998
Q ss_pred ccc
Q 000176 833 SCC 835 (1924)
Q Consensus 833 ~~~ 835 (1924)
+..
T Consensus 95 ~~~ 97 (119)
T d1wi5a_ 95 SEV 97 (119)
T ss_dssp CCS
T ss_pred HHh
Confidence 865
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=1.2e-10 Score=133.33 Aligned_cols=218 Identities=14% Similarity=-0.017 Sum_probs=163.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-H
Q 000176 1672 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-K 1750 (1924)
Q Consensus 1672 P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~ 1750 (1924)
|+.+.+|...+..+.+.|++++|...|++|++..|.. ...|..+.......| +.+.|...|++|++..|.. .
T Consensus 34 ~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~-----~~a~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~ 106 (259)
T d1xnfa_ 34 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM-----PEVFNYLGIYLTQAG--NFDAAYEAFDSVLELDPTYNY 106 (259)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC-----HHHHhhhchHHHHHH--HHHHhhhhhhHHHHHHhhhhh
Confidence 3456789999999999999999999999999877753 357888889999999 5599999999999999875 8
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 000176 1751 VHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEF 1829 (1924)
Q Consensus 1751 i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~ 1829 (1924)
.|..++.+|...|++++|.+.|+++++..|.+...+..++...... ..+.+..+........+...+..+...+.....
T Consensus 107 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (259)
T d1xnfa_ 107 AHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNIS 186 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHH
Confidence 9999999999999999999999999999988887766665555544 444444444555444433322222111111111
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 000176 1830 KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1900 (1924)
Q Consensus 1830 ~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~ 1900 (1924)
..+..+.+...+...+...|...++|..++..+...|+++.|...|++|+. ..|+.. ++.++..+|.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~--~~~~~a~~~L 253 (259)
T d1xnfa_ 187 EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHNF--VEHRYALLEL 253 (259)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTTC--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCH--HHHHHHHHHH
Confidence 223356666666666666777778999999999999999999999999998 556543 5666665543
|
| >d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.24 E-value=1e-11 Score=115.96 Aligned_cols=75 Identities=19% Similarity=0.397 Sum_probs=68.8
Q ss_pred CCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCccc-ccCcccCCCCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000176 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ-RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1924)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~-~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~~ 835 (1924)
++|+++.|+|++++++|+||++++++.||+|.+++++.. ..++.+.|++||.|.|+|+++|+ ++|+.||||...+
T Consensus 4 k~Gd~V~G~V~~v~~~g~~V~i~~~~~g~l~~se~s~~~~~~~~~~~~~vGd~V~~kV~~vd~-~~~i~LS~k~~~~ 79 (83)
T d2ba0a1 4 SVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDP-KMKVTLTMKDRIC 79 (83)
T ss_dssp CTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECT-TCCEEEECCSSSC
T ss_pred CCCCEEEEEEEEEECCEEEEecCCCeeEEEecccccccccccChhhhcccccEEEEEEEEECC-CCCEEEEecCCCC
Confidence 579999999999999999999999999999999999754 67899999999999999999996 5789999998654
|
| >d2je6i1 b.40.4.5 (I:66-152) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.23 E-value=5.7e-12 Score=118.65 Aligned_cols=76 Identities=24% Similarity=0.379 Sum_probs=68.2
Q ss_pred cCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCccccc---CcccccCCCcEEEEEEEEEecCCCeeEEeccccc
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD---NIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1531 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~---~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s~ 1531 (1924)
-++||+|.|+|+++.+||+||+|.+ +++||||+|++++.++. ++.+.|++||.|.|+|+++|+ .++|.||+|...
T Consensus 5 Pk~Gdiv~G~V~~i~~~g~fV~i~~-~~~gll~~s~~~~~~~~~~~~~~~~~~~Gd~v~~kV~~vd~-~~~i~LS~k~~~ 82 (87)
T d2je6i1 5 PKINDIVIGLVEDVEIYGWVVDIKA-PYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDR-SIDPVLSVKGKD 82 (87)
T ss_dssp CCTTCEEEEEEEEECSSEEEEECSS-SSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEET-TEEEEEECCSTT
T ss_pred CCCCCEEEEEEEEEECCEEEEEeCC-CEEEEEehHHhCCceeccccccchhhcccceEEEEEEEECC-CCCEEEEEecCC
Confidence 3689999999999999999999976 89999999999998664 577899999999999999995 589999999854
Q ss_pred c
Q 000176 1532 F 1532 (1924)
Q Consensus 1532 ~ 1532 (1924)
+
T Consensus 83 l 83 (87)
T d2je6i1 83 L 83 (87)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1go3e1 b.40.4.5 (E:79-184) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.23 E-value=9.3e-12 Score=121.34 Aligned_cols=75 Identities=27% Similarity=0.563 Sum_probs=65.5
Q ss_pred CCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccc-----------cCcccccCCCcEEEEEEEEEecCCCe--
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------DNIETIYRAGEKVKVKILKVDKEKRR-- 1522 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~-----------~~~~~~~~~Gd~Vk~~Vl~id~e~~r-- 1522 (1924)
++|+++.|+|++|.+||+||+|+ +++||||+++|+++++ .++.+.|++||.|+++|++||.+++|
T Consensus 2 ~~gei~~g~V~~v~~~G~FVel~--~ieGlv~~s~l~~~~~~~~~~~~~~~~~~~~~~~~~Gd~v~vkV~~vd~~~~~~~ 79 (106)
T d1go3e1 2 EMYELIEGEVVDVVEFGSFVRLG--PLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAERKR 79 (106)
T ss_dssp CTTCEEEEEEEEEETTEEEEECS--SSEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC----
T ss_pred CCCCEEEEEEEEEeeeEEEEEee--CeEEEEEeecccCceeeeccceeEEeecccccceeecceEEEEEEEEchhhcccc
Confidence 58999999999999999999995 6999999999999876 36778999999999999999999887
Q ss_pred ---eEEecccccc
Q 000176 1523 ---ISLGMKSSYF 1532 (1924)
Q Consensus 1523 ---i~lslK~s~~ 1532 (1924)
|.||+|+.+.
T Consensus 80 ~~~i~ls~K~~~~ 92 (106)
T d1go3e1 80 GSKIALTMRQPYL 92 (106)
T ss_dssp -CEEEEECCSTTC
T ss_pred CceeecccccCCC
Confidence 6778887544
|
| >d2z0sa1 b.40.4.5 (A:60-147) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Aeropyrum pernix [TaxId: 56636]
Probab=99.20 E-value=8.7e-12 Score=117.72 Aligned_cols=76 Identities=24% Similarity=0.457 Sum_probs=68.2
Q ss_pred cCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCccccc----CcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD----NIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~----~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
-++||+|.|+|+++.+||+||+|.+ ++.||+|.||+++.++. ++.+.|++||.|+|+|+++|+ .++|.||+|+.
T Consensus 5 Pk~GdvV~G~V~~v~~~g~fV~i~~-~~~g~l~~se~~~~~~~~~~~~~~~~~~vGd~V~~kV~~vd~-~~~i~Ls~k~~ 82 (88)
T d2z0sa1 5 PQAGDVVIGLIQSVGIMNWFVDINS-PYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDK-TRSPLLTVQGE 82 (88)
T ss_dssp CCTTCCEEEEEEEECSSEEEEECSS-SSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECT-TSCEEEECCSS
T ss_pred CCCCCEEEEEEEEEECCeEEEEeCC-CeEEEEehHHhCcccccccccchhhhcccCcEEEEEEEEECC-CCCEEEEEecC
Confidence 3689999999999999999999975 89999999999998764 678899999999999999995 57999999986
Q ss_pred cc
Q 000176 1531 YF 1532 (1924)
Q Consensus 1531 ~~ 1532 (1924)
.+
T Consensus 83 ~~ 84 (88)
T d2z0sa1 83 GL 84 (88)
T ss_dssp SC
T ss_pred CC
Confidence 43
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.11 E-value=5.4e-11 Score=142.30 Aligned_cols=231 Identities=10% Similarity=0.021 Sum_probs=177.7
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLS----------MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE 1726 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~----------~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~ 1726 (1924)
.+++...|+++|..+|+++.+|.....+... .+.+++|...++++++..|.. ...|..+..+...
T Consensus 45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~-----~~~~~~~~~~~~~ 119 (334)
T d1dcea1 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS-----YGTWHHRCWLLSR 119 (334)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCc-----HHHHHHhhHHHHH
Confidence 5689999999999999999999776655443 334789999999999877743 3588887777666
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCH-HHH-HHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHH--
Q 000176 1727 YGNPPEEAVVKVFQRALQYCDPK-KVH-LALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGV-- 1801 (1924)
Q Consensus 1727 ~g~~~~e~a~~vferAl~~~~~~-~i~-~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A-- 1801 (1924)
.+..+.++|...+++|++.+|.. ..| ...+.++...+.+++|.+.|++++...|.+..+|..++..+... ++++|
T Consensus 120 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~ 199 (334)
T d1dcea1 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (334)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred hccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHH
Confidence 66434689999999999998864 555 45667888889999999999999999999999999999988876 44332
Q ss_pred ------------HHHHHHHHHhCCCCChH--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 000176 1802 ------------QAVVQRALLSLPRHKHI--------------KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLW 1855 (1924)
Q Consensus 1802 ------------~~l~~ral~~~p~~~~~--------------~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw 1855 (1924)
...+..++...+.+... ..+...+..+...++++.|...|.+++..+|.+..+|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 279 (334)
T d1dcea1 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI 279 (334)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHH
Confidence 22223333333333211 2233445556667889999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 000176 1856 SIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1895 (1924)
Q Consensus 1856 ~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~y 1895 (1924)
..++..+...|++++|...|++++. +.|.+. ..|...
T Consensus 280 ~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~-~y~~~L 316 (334)
T d1dcea1 280 ILLMRALDPLLYEKETLQYFSTLKA--VDPMRA-AYLDDL 316 (334)
T ss_dssp HHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGH-HHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--HCcccH-HHHHHH
Confidence 9999999999999999999999998 788777 466644
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=8.8e-09 Score=121.59 Aligned_cols=272 Identities=10% Similarity=-0.010 Sum_probs=209.6
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcc-hhhHHHHHHHH
Q 000176 1647 AAEERLLEKDAPRTPDEFERLVRSSPNS-----SFVWIKYMAFMLSMADVEKARSIAERALQTINIRE-ENEKLNIWVAY 1720 (1924)
Q Consensus 1647 ~~e~~~~~~~~p~a~~~ferll~~~P~s-----~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~e-e~ekl~lWiay 1720 (1924)
..+.....++.++|...|+++|...|++ ..+|..++..+...|++++|...|++++...+... .......+...
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 3444455677889999999999998876 34677788889999999999999999997543211 11222344445
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCC-------H--HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC-----CHHHH
Q 000176 1721 FNLENEYGNPPEEAVVKVFQRALQYCDP-------K--KVHLALLGLYERTEQNKLADELLYKMIKKFKH-----SCKVW 1786 (1924)
Q Consensus 1721 l~le~~~g~~~~e~a~~vferAl~~~~~-------~--~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~-----~~~vw 1786 (1924)
.......+ +...+...+.+++...+. . ..+..++.+|...++++.|...|+++....+. ....+
T Consensus 98 ~~~~~~~~--~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 175 (366)
T d1hz4a_ 98 SEILFAQG--FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 175 (366)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHH
Confidence 55566678 569999999999875321 1 56778899999999999999999999987643 24456
Q ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHH
Q 000176 1787 LRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-----HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR----TDLWS 1856 (1924)
Q Consensus 1787 ~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~-----~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~----~dlw~ 1856 (1924)
...+..+... .+..+...+.++........ ...++...+.++...|++++|...+++++...|.. ...|.
T Consensus 176 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 255 (366)
T d1hz4a_ 176 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 255 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 6667777777 99999999999888765432 13567788888999999999999999999887654 33567
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc----CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000176 1857 IYLDQEIRLGDVDLIRGLFERAISL----SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921 (1924)
Q Consensus 1857 ~y~~le~k~gd~~~ar~lferal~~----~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~ 1921 (1924)
..+..+...|+++.|...|++++.. ...|... ..|..........|+.+.|...+++|++..+.
T Consensus 256 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~ 323 (366)
T d1hz4a_ 256 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLN-RNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 323 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence 7788999999999999999999852 3455555 56777777888899999999999999987654
|
| >d2je6i1 b.40.4.5 (I:66-152) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.11 E-value=5.2e-11 Score=111.95 Aligned_cols=75 Identities=24% Similarity=0.276 Sum_probs=68.7
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCccc---CCCCccCCCCcEEEEEEEEEeCCCCEEEEEeeccc
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV---ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~---~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~ 1440 (1924)
-++|++|.|+|++++++|+||+|+.+++|++|+++++|.++ .++.+.|++||.|.|+|+++|+ ++++.||+|...
T Consensus 5 Pk~Gdiv~G~V~~i~~~g~fV~i~~~~~gll~~s~~~~~~~~~~~~~~~~~~~Gd~v~~kV~~vd~-~~~i~LS~k~~~ 82 (87)
T d2je6i1 5 PKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDR-SIDPVLSVKGKD 82 (87)
T ss_dssp CCTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEET-TEEEEEECCSTT
T ss_pred CCCCCEEEEEEEEEECCEEEEEeCCCEEEEEehHHhCCceeccccccchhhcccceEEEEEEEECC-CCCEEEEEecCC
Confidence 36899999999999999999999999999999999999865 4678899999999999999995 689999999754
|
| >d1go3e1 b.40.4.5 (E:79-184) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.11 E-value=9.3e-11 Score=114.14 Aligned_cols=80 Identities=24% Similarity=0.408 Sum_probs=69.9
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCccc-----------CCCCccCCCCcEEEEEEEEEeCCCCE---
Q 000176 1366 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-----------ESPEKEFPIGKLVAGRVLSVEPLSKR--- 1431 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~-----------~~~~~~f~~G~~V~~kVl~vd~e~~r--- 1431 (1924)
++|+++.|+|++|+++|+||+|+ +++||||+++|+|+|. .++.+.|++||.|+++|++||.+.++
T Consensus 2 ~~gei~~g~V~~v~~~G~FVel~-~ieGlv~~s~l~~~~~~~~~~~~~~~~~~~~~~~~~Gd~v~vkV~~vd~~~~~~~~ 80 (106)
T d1go3e1 2 EMYELIEGEVVDVVEFGSFVRLG-PLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAERKRG 80 (106)
T ss_dssp CTTCEEEEEEEEEETTEEEEECS-SSEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC-----
T ss_pred CCCCEEEEEEEEEeeeEEEEEee-CeEEEEEeecccCceeeeccceeEEeecccccceeecceEEEEEEEEchhhccccC
Confidence 57999999999999999999997 6999999999999875 47788999999999999999988876
Q ss_pred --EEEEeecccccccch
Q 000176 1432 --VEVTLKTSDSRTASQ 1446 (1924)
Q Consensus 1432 --i~LSlk~~~~~~~~~ 1446 (1924)
|.||+|+...+|+++
T Consensus 81 ~~i~ls~K~~~~~~~e~ 97 (106)
T d1go3e1 81 SKIALTMRQPYLGKLEW 97 (106)
T ss_dssp CEEEEECCSTTCEEHHH
T ss_pred ceeecccccCCCCcchh
Confidence 788999877776543
|
| >d2z0sa1 b.40.4.5 (A:60-147) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome complex RNA-binding protein 1, ECR1 species: Aeropyrum pernix [TaxId: 56636]
Probab=99.09 E-value=6e-11 Score=111.83 Aligned_cols=75 Identities=12% Similarity=0.172 Sum_probs=67.9
Q ss_pred CCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCccccc----CcccCCCCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000176 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA----DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1924)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~----~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~~ 835 (1924)
++|+++.|+|++++++|+||++.+++.||+|.+++++.+.. ++...|++||.|.|+|+++|++ +++.||||+..+
T Consensus 6 k~GdvV~G~V~~v~~~g~fV~i~~~~~g~l~~se~~~~~~~~~~~~~~~~~~vGd~V~~kV~~vd~~-~~i~Ls~k~~~~ 84 (88)
T d2z0sa1 6 QAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDKT-RSPLLTVQGEGL 84 (88)
T ss_dssp CTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECTT-SCEEEECCSSSC
T ss_pred CCCCEEEEEEEEEECCeEEEEeCCCeEEEEehHHhCcccccccccchhhhcccCcEEEEEEEEECCC-CCEEEEEecCCC
Confidence 57999999999999999999999999999999999987654 6678899999999999999964 799999997643
|
| >d1e3pa2 b.40.4.5 (A:656-717) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Streptomyces antibioticus [TaxId: 1890]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase species: Streptomyces antibioticus [TaxId: 1890]
Probab=99.05 E-value=3.5e-12 Score=110.90 Aligned_cols=57 Identities=28% Similarity=0.626 Sum_probs=36.0
Q ss_pred EEEEEeecceEEEEEecCceeEEeeccccCc----ccccCcccccCCCcEEEEEEEEEecCC
Q 000176 1463 GQIKRVESYGLFITIENTNLVGLCHVSELSE----DHVDNIETIYRAGEKVKVKILKVDKEK 1520 (1924)
Q Consensus 1463 G~V~~v~~~GvFV~l~~~~v~gl~h~sels~----~~~~~~~~~~~~Gd~Vk~~Vl~id~e~ 1520 (1924)
|+|++|.+||+||+|.+ +++||||+|||++ .+++++++.|++||.|+++|++||+++
T Consensus 1 G~V~~i~~fG~FV~l~~-g~~Glihiseis~~~~~~~v~~~~~~~~~G~~V~vkV~~iD~~~ 61 (62)
T d1e3pa2 1 GSVVKTTTFGAFVSLLP-GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRG 61 (62)
T ss_dssp CBEEECC-CSCEECCC----CCCCC-------------------CCSSCBCCCCCCCCCSSC
T ss_pred CEEEEEEeceEEEEecC-CceEEEEHHHcccccccccccCHHHhcCCCCEEEEEEEEEcCCC
Confidence 78999999999999987 8999999999985 467899999999999999999999654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=1.3e-09 Score=124.37 Aligned_cols=218 Identities=13% Similarity=0.001 Sum_probs=158.7
Q ss_pred CHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHH
Q 000176 1690 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLA 1768 (1924)
Q Consensus 1690 e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A 1768 (1924)
+.+.|..-+++++...+.. +.++..+|.....++...| +.+.|.+.|++|++.+|.. .+|..++.+|.+.|++++|
T Consensus 14 ~~e~al~~~~e~l~~~~~~-~~~~a~~~~~~G~~y~~~g--~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A 90 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALT-DDERAQLLYERGVLYDSLG--LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 90 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCC-HHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhhhcC-CHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHh
Confidence 3455666667777654432 3445678888888889999 5599999999999999875 9999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 000176 1769 DELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE 1847 (1924)
Q Consensus 1769 ~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~ 1847 (1924)
.+.|+++++..|....+|+.++..+... ++++|...|+++++..|... ..+...+..+...+..+.+..+.+.....
T Consensus 91 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (259)
T d1xnfa_ 91 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP--FRSLWLYLAEQKLDEKQAKEVLKQHFEKS 168 (259)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred hhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccH--HHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999 99999999999999998874 34444445555566666666666665555
Q ss_pred CCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1848 YPKRTDLWSIYLDQEI----RLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1848 ~Pk~~dlw~~y~~le~----k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
.+.... |... .++. ..+..+.+...+...+. ..|... ..|.....+....|+.+.|...|++|++
T Consensus 169 ~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~ 237 (259)
T d1xnfa_ 169 DKEQWG-WNIV-EFYLGNISEQTLMERLKADATDNTS--LAEHLS-ETNFYLGKYYLSLGDLDSATALFKLAVA 237 (259)
T ss_dssp CCCSTH-HHHH-HHHTTSSCHHHHHHHHHHHCCSHHH--HHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chhhhh-hhHH-HHHHHHHHHHHHHHHHHHHHHHhhh--cCcccH-HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444432 2221 1221 12223444444444444 344444 3555556677889999999999999974
|
| >d1e3pa2 b.40.4.5 (A:656-717) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Streptomyces antibioticus [TaxId: 1890]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase species: Streptomyces antibioticus [TaxId: 1890]
Probab=98.99 E-value=8.6e-12 Score=108.41 Aligned_cols=58 Identities=24% Similarity=0.330 Sum_probs=36.7
Q ss_pred EEEEEEecCeEEEEECCCeEEEecCCccCc----ccccCcccCCCCCCEEEEEEEEeeCCCC
Q 000176 767 GYVCNIIETGCFVRFLGRLTGFAPRSKAVD----GQRADLSKTYYVGQSVRSNILDVNSETG 824 (1924)
Q Consensus 767 G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~----~~~~~~~~~f~~Gq~V~~~V~~id~~~~ 824 (1924)
|+|++|++||+||++++++.||+|.|+|++ .++.+|++.|++||+|+|+|++||++++
T Consensus 1 G~V~~i~~fG~FV~l~~g~~Glihiseis~~~~~~~v~~~~~~~~~G~~V~vkV~~iD~~~r 62 (62)
T d1e3pa2 1 GSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGK 62 (62)
T ss_dssp CBEEECC-CSCEECCC---CCCCC-------------------CCSSCBCCCCCCCCCSSCC
T ss_pred CEEEEEEeceEEEEecCCceEEEEHHHcccccccccccCHHHhcCCCCEEEEEEEEEcCCCC
Confidence 789999999999999999999999999985 4678999999999999999999997653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.96 E-value=1.4e-10 Score=138.69 Aligned_cols=197 Identities=8% Similarity=-0.096 Sum_probs=149.2
Q ss_pred CchHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCcchhhHHHHHHHHH-HHHHHcCCCCHHH
Q 000176 1658 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA--DVEKARSIAERALQTINIREENEKLNIWVAYF-NLENEYGNPPEEA 1734 (1924)
Q Consensus 1658 p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~--e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl-~le~~~g~~~~e~ 1734 (1924)
.++...|++++..+|.+..+|..++..+.+.+ ++++|...+++++...|... ..|...+ ......+ ..+.
T Consensus 90 ~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~-----~~~~~~~~~~~~~~~--~~~~ 162 (334)
T d1dcea1 90 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF-----HCWDYRRFVAAQAAV--APAE 162 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTCC--CHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhh-----hhhhhHHHHHHHhcc--ccHH
Confidence 35667899999999999999999988887665 58999999999998766432 2454333 3444456 4599
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHH------------------------------HHHhcCCCH
Q 000176 1735 VVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYK------------------------------MIKKFKHSC 1783 (1924)
Q Consensus 1735 a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~------------------------------~lk~~~~~~ 1783 (1924)
|.+.|+++++.+|.. ..|..++.++.+.|++++|...|.+ ++...+...
T Consensus 163 Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~ 242 (334)
T d1dcea1 163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPL 242 (334)
T ss_dssp HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchh
Confidence 999999999999874 9999999999888887654333322 222222222
Q ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000176 1784 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1862 (1924)
Q Consensus 1784 ~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le 1862 (1924)
..|...+..+... ++.+|...|.++++..|.. ..+|...|..+...|++++|...|++++..+|.+...|..++..+
T Consensus 243 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~ 320 (334)
T d1dcea1 243 FRCELSVEKSTVLQSELESCKELQELEPENKWC--LLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 320 (334)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence 2223334444445 7888999999998888765 689999999999999999999999999999999999999876554
Q ss_pred H
Q 000176 1863 I 1863 (1924)
Q Consensus 1863 ~ 1863 (1924)
.
T Consensus 321 ~ 321 (334)
T d1dcea1 321 L 321 (334)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >d2ix0a3 b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Exoribonuclease 2, RNB species: Escherichia coli [TaxId: 562]
Probab=98.87 E-value=2.2e-09 Score=99.57 Aligned_cols=69 Identities=17% Similarity=0.250 Sum_probs=60.2
Q ss_pred CCcEEEEEEEEeecceEEEEEecCceeEEeeccccCccccc------------CcccccCCCcEEEEEEEEEecCCCeeE
Q 000176 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD------------NIETIYRAGEKVKVKILKVDKEKRRIS 1524 (1924)
Q Consensus 1457 ~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~------------~~~~~~~~Gd~Vk~~Vl~id~e~~ri~ 1524 (1924)
.|+.++|.|++|++||+||+|.+.+++||+|+|+|.+++.. +....|+.||.|+++|+++|++++||.
T Consensus 3 ~~~~F~g~Is~v~~~GifV~L~e~~~eGlI~~s~L~~d~y~~d~~~~~l~~~~~~~~~~~~Gd~V~V~v~~vd~~~r~I~ 82 (87)
T d2ix0a3 3 TDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSII 82 (87)
T ss_dssp SCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEETTTTEEE
T ss_pred CCCEEEEEEEEEEcCeEEEEEecCCcEEEEEehhCCCceEEEeccceEEEEEEcccEEEECCCEEEEEEEEEecccCeEE
Confidence 46789999999999999999987689999999999987531 124579999999999999999999996
Q ss_pred E
Q 000176 1525 L 1525 (1924)
Q Consensus 1525 l 1525 (1924)
+
T Consensus 83 ~ 83 (87)
T d2ix0a3 83 A 83 (87)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=2.1e-08 Score=99.91 Aligned_cols=108 Identities=13% Similarity=-0.069 Sum_probs=96.1
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC
Q 000176 1754 ALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1832 (1924)
Q Consensus 1754 ~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g 1832 (1924)
.-++.+...|++++|...|+++++..|.++.+|..+|..+... ++++|...|.++++..|.. ..+|..+|..+...|
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW--GKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccch--hhHHHHHHHHHHHcc
Confidence 4567788899999999999999999999999999999999988 9999999999999998876 588999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000176 1833 VADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1863 (1924)
Q Consensus 1833 ~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~ 1863 (1924)
+++.|...|++++..+|++.++|..+..++.
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 9999999999999999999999988887764
|
| >d2nn6h1 b.40.4.5 (H:73-167) S1-domain of Ribosomal RNA-processing protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of Ribosomal RNA-processing protein 4, RRP4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=7.5e-10 Score=105.32 Aligned_cols=75 Identities=20% Similarity=0.302 Sum_probs=64.2
Q ss_pred CCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcc----------cccCcccccCCCcEEEEEEEEEecCCCeeEE
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED----------HVDNIETIYRAGEKVKVKILKVDKEKRRISL 1525 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~----------~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~l 1525 (1924)
++||+|.|+|+++.++|+||+|.. ...|++|+|++++. .+.++.+.|++||.|.|+|+++|. .++|.|
T Consensus 7 ~vGdiV~G~V~~v~~~g~~V~I~~-~~~g~l~is~i~~~~~~~rr~~~~~~~~~~~~~~~Gd~V~~kV~~v~~-dg~i~L 84 (95)
T d2nn6h1 7 EVGDIVVGRITEVQQKRWKVETNS-RLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFS-DGAVSL 84 (95)
T ss_dssp CSSBCCCEEEEEEETTEEEEECSS-SSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEET-TTEEEE
T ss_pred CCCCEEEEEEEEEecCcEEEEeCC-CceEEEEHHHccccccccccccchhhhhhhhhcccccEEEEEEEEECC-CCCEEE
Confidence 589999999999999999999975 78999999999753 334567889999999999999996 689999
Q ss_pred ecccccc
Q 000176 1526 GMKSSYF 1532 (1924)
Q Consensus 1526 slK~s~~ 1532 (1924)
|+|...+
T Consensus 85 s~r~~~~ 91 (95)
T d2nn6h1 85 HTRSLKY 91 (95)
T ss_dssp ECCSSTT
T ss_pred EeccccC
Confidence 9987543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.81 E-value=2.4e-07 Score=108.79 Aligned_cols=244 Identities=11% Similarity=0.000 Sum_probs=189.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC------
Q 000176 1675 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP------ 1748 (1924)
Q Consensus 1675 ~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~------ 1748 (1924)
+....-.+..++..|++++|...|++++...|......+...+..+..++...| +.+.|...|++|++..+.
T Consensus 12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~ 89 (366)
T d1hz4a_ 12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG--ELTRSLALMQQTEQMARQHDVWHY 89 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHhhcchHH
Confidence 344455677888999999999999999998886655555566777777888889 569999999999986432
Q ss_pred -HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcC-----C---CHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC--
Q 000176 1749 -KKVHLALLGLYERTEQNKLADELLYKMIKKFK-----H---SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-- 1816 (1924)
Q Consensus 1749 -~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~-----~---~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~-- 1816 (1924)
...+..++.+|...+++..|...|.+++...+ . ....+..++..+... +++.|...|.+++...+...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 169 (366)
T d1hz4a_ 90 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 169 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhh
Confidence 16677888899999999999999999887542 1 133566778888888 99999999999999876542
Q ss_pred -hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--Cch
Q 000176 1817 -HIKFISQTAILEFKNGVADRGRSMFEGILSEYPK-------RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL--PPK 1886 (1924)
Q Consensus 1817 -~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk-------~~dlw~~y~~le~k~gd~~~ar~lferal~~~~--~pk 1886 (1924)
....+...+..+...+++..+...+..+....+. ...+|...+.++...|+++.|...|++++.... ++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 249 (366)
T d1hz4a_ 170 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF 249 (366)
T ss_dssp GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchH
Confidence 3467778888899999999999999999876543 233677788888899999999999999887321 111
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000176 1887 KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921 (1924)
Q Consensus 1887 ~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~ 1921 (1924)
.. ..|..........|+.+.+...+++|+...+.
T Consensus 250 ~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 283 (366)
T d1hz4a_ 250 LQ-GQWRNIARAQILLGEFEPAEIVLEELNENARS 283 (366)
T ss_dssp GH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 12 23444456677789999999999999876543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=5.3e-08 Score=102.49 Aligned_cols=109 Identities=14% Similarity=0.025 Sum_probs=100.7
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 000176 1752 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1830 (1924)
Q Consensus 1752 ~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~ 1830 (1924)
+...++.|.+.|++++|...|+++++..|.+..+|..++..++.. ++++|...|+++++..|.+ ..+|..+|..++.
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~--~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY--IKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccc--hHHHHHHHHHHHH
Confidence 445678889999999999999999999999999999999999999 9999999999999999887 6899999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000176 1831 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1862 (1924)
Q Consensus 1831 ~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le 1862 (1924)
.|++++|...|++++...|.+..++..|....
T Consensus 91 ~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~ 122 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVKPHDKDAKMKYQECN 122 (159)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999888876654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=1.8e-07 Score=101.71 Aligned_cols=120 Identities=8% Similarity=-0.079 Sum_probs=80.4
Q ss_pred HHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCH
Q 000176 1756 LGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1834 (1924)
Q Consensus 1756 ~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~ 1834 (1924)
+..+...++++.|.+.|.++ .+.++.+|+++|..+... ++++|.+.|++|++..|.. ..+|...|.+++++|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~--~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL--AVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh--hhhHHHHHHHHHhhccH
Confidence 55566667777777666653 234566777777777666 7777777777777776655 46777777777777777
Q ss_pred HHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1835 DRGRSMFEGILSEYPKR----------------TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1835 e~Ar~lfe~aL~~~Pk~----------------~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
+.|...|++++...|.+ ..+|..++.++.+.|++++|...|++|+.
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 148 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777777776654432 34566677777777777777777777776
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=3.8e-08 Score=98.61 Aligned_cols=107 Identities=9% Similarity=0.028 Sum_probs=94.6
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc----CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 000176 1754 ALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ----QQEGVQAVVQRALLSLPRHKHIKFISQTAILEF 1829 (1924)
Q Consensus 1754 ~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~----~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~ 1829 (1924)
.+++.+...+++++|.+.|+++++..|.++.++++||.++++. ++++|..+|++++...|...++.+|+.+|..++
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 4667777888999999999999999999999999999999874 667899999999998877666789999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000176 1830 KNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1860 (1924)
Q Consensus 1830 ~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~ 1860 (1924)
+.|++++|+..|+++|...|++..++.....
T Consensus 84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~ 114 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQTEPQNNQAKELERL 114 (122)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 9999999999999999999999887655443
|
| >d1y14b1 b.40.4.5 (B:81-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.67 E-value=2.8e-08 Score=93.80 Aligned_cols=67 Identities=15% Similarity=0.230 Sum_probs=59.6
Q ss_pred CCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccc----------cCcccccCCCcEEEEEEEEEecCCCeeEE
Q 000176 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV----------DNIETIYRAGEKVKVKILKVDKEKRRISL 1525 (1924)
Q Consensus 1457 ~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~----------~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~l 1525 (1924)
+|++++|+|+++++||+||+|+ .++||+|+++|.+++. .+....|+.||.|+++|+++|.+++||..
T Consensus 3 ~Gev~~g~I~~v~~~G~fv~lg--~~eg~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~v~~~~~~i~~ 79 (91)
T d1y14b1 3 KGEVVDGTVVSCSQHGFEVQVG--PMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIHA 79 (91)
T ss_dssp TTCEEEEEEEEEETTEEEEEET--TEEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEETTEEEE
T ss_pred CCCEEEEEEEEEEeeEEEEEEc--CeEEEEEhhhcCcceEEccccceeEecccCeEEeCCCEEEEEEEEEecccCccEE
Confidence 6999999999999999999995 5899999999988754 23456899999999999999999999965
|
| >d2nn6h1 b.40.4.5 (H:73-167) S1-domain of Ribosomal RNA-processing protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of Ribosomal RNA-processing protein 4, RRP4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=6.6e-09 Score=98.68 Aligned_cols=74 Identities=20% Similarity=0.196 Sum_probs=63.9
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcc----------cCCCCccCCCCcEEEEEEEEEeCCCCEEEEE
Q 000176 1366 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY----------VESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~----------~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LS 1435 (1924)
++|++|.|+|+++.++|+||+|+...+|++|+++++|.+ +.++.+.|++||.|.|+|++++. +++|.||
T Consensus 7 ~vGdiV~G~V~~v~~~g~~V~I~~~~~g~l~is~i~~~~~~~rr~~~~~~~~~~~~~~~Gd~V~~kV~~v~~-dg~i~Ls 85 (95)
T d2nn6h1 7 EVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFS-DGAVSLH 85 (95)
T ss_dssp CSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEET-TTEEEEE
T ss_pred CCCCEEEEEEEEEecCcEEEEeCCCceEEEEHHHccccccccccccchhhhhhhhhcccccEEEEEEEEECC-CCCEEEE
Confidence 589999999999999999999999999999999998642 23456679999999999999996 6999999
Q ss_pred eeccc
Q 000176 1436 LKTSD 1440 (1924)
Q Consensus 1436 lk~~~ 1440 (1924)
+|...
T Consensus 86 ~r~~~ 90 (95)
T d2nn6h1 86 TRSLK 90 (95)
T ss_dssp CCSST
T ss_pred ecccc
Confidence 98743
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=2.8e-07 Score=91.50 Aligned_cols=108 Identities=11% Similarity=0.014 Sum_probs=98.6
Q ss_pred HHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000176 1788 RRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1866 (1924)
Q Consensus 1788 ~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~g 1866 (1924)
.-|..++.. ++++|...|.++|+..|.. ..+|..+|..++..|+++.|...|++++...|.+...|..++..+...|
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHN--HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcc--hhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence 446677888 9999999999999999988 5899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 000176 1867 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1900 (1924)
Q Consensus 1867 d~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~ 1900 (1924)
+++.|...|++++. +.|... .+|..+..++.
T Consensus 86 ~~~~A~~~~~~a~~--~~p~~~-~~~~~l~~l~~ 116 (117)
T d1elwa_ 86 RFEEAKRTYEEGLK--HEANNP-QLKEGLQNMEA 116 (117)
T ss_dssp CHHHHHHHHHHHHT--TCTTCH-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHhC
Confidence 99999999999998 777777 67877766653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=5.6e-07 Score=94.41 Aligned_cols=106 Identities=11% Similarity=0.084 Sum_probs=94.7
Q ss_pred HHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000176 1788 RRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1866 (1924)
Q Consensus 1788 ~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~g 1866 (1924)
..|..+++. ++++|...|+++++..|.+ ..+|..+|.+++..|+++.|...|+++|+..|++..+|..++..+...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSN--AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhh--hhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 446667788 9999999999999999987 6999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000176 1867 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1898 (1924)
Q Consensus 1867 d~~~ar~lferal~~~~~pk~~k~lw~~yl~~ 1898 (1924)
+++.|...|++++. +.|... .++..+...
T Consensus 93 ~~~eA~~~~~~a~~--~~p~~~-~~~~~l~~~ 121 (159)
T d1a17a_ 93 KFRAALRDYETVVK--VKPHDK-DAKMKYQEC 121 (159)
T ss_dssp CHHHHHHHHHHHHH--HSTTCH-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--cCCCCH-HHHHHHHHH
Confidence 99999999999999 667666 455554433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.57 E-value=7.1e-07 Score=103.53 Aligned_cols=206 Identities=12% Similarity=0.052 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCc-chhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC------
Q 000176 1676 FVWIKYMAFMLSMADVEKARSIAERALQTINIR-EENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP------ 1748 (1924)
Q Consensus 1676 ~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~-ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~------ 1748 (1924)
.+|.+.+..+..++++++|.+.|++|+...... ...+-...|....+++...+ +.+.|.+.|++|+...+.
T Consensus 38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~--~~~~A~~~~~~a~~~~~~~~~~~~ 115 (290)
T d1qqea_ 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG--NSVNAVDSLENAIQIFTHRGQFRR 115 (290)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHhhHHhhhcccchh
Confidence 567777888889999999999999999743211 11223456777778888888 558999999999876432
Q ss_pred -HHHHHHHHHHHHH-hCChHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh--
Q 000176 1749 -KKVHLALLGLYER-TEQNKLADELLYKMIKKFK------HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-- 1817 (1924)
Q Consensus 1749 -~~i~~~l~~i~~~-~gk~e~A~~~fe~~lk~~~------~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~-- 1817 (1924)
...+..++.+|.. .+++++|.+.|++++..++ ....+|..++.++... ++++|...|++++...+....
T Consensus 116 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~ 195 (290)
T d1qqea_ 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ 195 (290)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhh
Confidence 2678888888865 5999999999999987652 1255688899999988 999999999999988766421
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHH--cCCHHHHHHHHHHHHhcCCCc
Q 000176 1818 ---IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLW-----SIYLDQEIR--LGDVDLIRGLFERAISLSLPP 1885 (1924)
Q Consensus 1818 ---~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw-----~~y~~le~k--~gd~~~ar~lferal~~~~~p 1885 (1924)
...+...+..+...|+++.|...|++++..+|...+.+ ..++..+.. .+.++.|...|+++.. +.|
T Consensus 196 ~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~--lD~ 271 (290)
T d1qqea_ 196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR--LDK 271 (290)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC--CCH
T ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh--cCH
Confidence 13556667777788999999999999988887644432 223332221 2336667777776554 444
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.56 E-value=7e-08 Score=105.11 Aligned_cols=100 Identities=14% Similarity=-0.046 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
+-....++.|.+.|++++|...|++++...|.++.+|..+|..+++. ++++|...|++|++..|.. +.+|..+|.++
T Consensus 5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~--~~a~~~lg~~~ 82 (201)
T d2c2la1 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS--VKAHFFLGQCQ 82 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCc--HHHHHHHHHHH
Confidence 44557788999999999999999999999999999999999999999 9999999999999998877 58999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKR 1851 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~ 1851 (1924)
+..|+++.|...|++++...|..
T Consensus 83 ~~l~~~~~A~~~~~~al~l~p~~ 105 (201)
T d2c2la1 83 LEMESYDEAIANLQRAYSLAKEQ 105 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHhCccc
Confidence 99999999999999999887754
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=9.6e-07 Score=95.80 Aligned_cols=133 Identities=11% Similarity=0.126 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000176 1714 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1793 (1924)
Q Consensus 1714 l~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l 1793 (1924)
+.+|.. .......+ +.++|.+.|.++. .+...+|+.++.+|...|++++|.+.|+++++..|..+.+|+.+|..+
T Consensus 6 ~~l~~~-g~~~~~~~--d~~~Al~~~~~i~--~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~ 80 (192)
T d1hh8a_ 6 ISLWNE-GVLAADKK--DWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 80 (192)
T ss_dssp HHHHHH-HHHHHHTT--CHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHCC--CHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 346754 55556778 4599999998752 234589999999999999999999999999999999999999999999
Q ss_pred Hhc-CHHHHHHHHHHHHHhCCCCCh--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000176 1794 LKQ-QQEGVQAVVQRALLSLPRHKH--------------IKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1851 (1924)
Q Consensus 1794 ~~~-~~~~A~~l~~ral~~~p~~~~--------------~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~ 1851 (1924)
.+. ++++|...|++|+..++.+.. ..++..+|.++.+.|++++|...|++++...|..
T Consensus 81 ~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 81 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 999 999999999999987765321 4788999999999999999999999999988874
|
| >d2c35b1 b.40.4.5 (B:78-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=8.7e-08 Score=90.86 Aligned_cols=74 Identities=16% Similarity=0.330 Sum_probs=63.0
Q ss_pred CCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccc------------cCcccccCCCcEEEEEEEEEecCCCeeE
Q 000176 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV------------DNIETIYRAGEKVKVKILKVDKEKRRIS 1524 (1924)
Q Consensus 1457 ~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~------------~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~ 1524 (1924)
+|++++|+|++++++|+||+|+ .++||+|+++|.+++. ++....|+.||.|+++|++++.+.++|.
T Consensus 4 ~Gev~~g~V~~v~~~G~fv~lg--~~~~~v~~~~l~~d~~y~~~~~~~~~~~~~~~~~~~~Gd~VrvkV~~v~~~~~~I~ 81 (94)
T d2c35b1 4 KGEVVDAVVTQVNKVGLFTEIG--PMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIF 81 (94)
T ss_dssp TTCEEEEEEEEEETTEEEEEET--TEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEETTEEE
T ss_pred CCCEEEEEEEEEEeeEEEEEec--CceEEEEhhhcCcceeecccccceEEEcccceEEEeCCCEEEEEEEEEecCcCcce
Confidence 6999999999999999999995 5899999999998752 2234579999999999999999999997
Q ss_pred --Eecccccc
Q 000176 1525 --LGMKSSYF 1532 (1924)
Q Consensus 1525 --lslK~s~~ 1532 (1924)
.+|+..|.
T Consensus 82 ~igt~~~d~L 91 (94)
T d2c35b1 82 AIGSLMDDYL 91 (94)
T ss_dssp EEEECCSTTC
T ss_pred EEEEccCCCc
Confidence 45666543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.55 E-value=6.1e-07 Score=104.16 Aligned_cols=162 Identities=11% Similarity=0.018 Sum_probs=131.9
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC---C----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC------H
Q 000176 1717 WVAYFNLENEYGNPPEEAVVKVFQRALQYCD---P----KKVHLALLGLYERTEQNKLADELLYKMIKKFKHS------C 1783 (1924)
Q Consensus 1717 Wiayl~le~~~g~~~~e~a~~vferAl~~~~---~----~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~------~ 1783 (1924)
|....+++...+++ ++|.+.|++|+.... . -..|..++.+|.+.+++++|.+.|++++..++.. .
T Consensus 40 y~~aa~~y~~~~~~--~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 117 (290)
T d1qqea_ 40 CVQAATIYRLRKEL--NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (290)
T ss_dssp HHHHHHHHHHTTCT--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHCcCH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHH
Confidence 33334667778866 999999999998642 1 2789999999999999999999999999876432 6
Q ss_pred HHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCCC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----
Q 000176 1784 KVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPRHK----HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT----- 1852 (1924)
Q Consensus 1784 ~vw~~~a~~l~~~--~~~~A~~l~~ral~~~p~~~----~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~----- 1852 (1924)
.++..++..+... ++++|.+.|++|+...+... ...++..+|.++...|++++|..+|++++...|...
T Consensus 118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~ 197 (290)
T d1qqea_ 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (290)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhh
Confidence 6777888877654 99999999999998754322 236789999999999999999999999999887653
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1853 --DLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1853 --dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
.+|...+..+...++++.|+..|++++.
T Consensus 198 ~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3456667777789999999999999987
|
| >d2ix0a3 b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Exoribonuclease 2, RNB species: Escherichia coli [TaxId: 562]
Probab=98.54 E-value=8.4e-08 Score=88.75 Aligned_cols=67 Identities=19% Similarity=0.222 Sum_probs=57.7
Q ss_pred CCEEEEEEEEEecCeEEEEEC-CCeEEEecCCccCccccc------------CcccCCCCCCEEEEEEEEeeCCCCeEEE
Q 000176 762 NSVVHGYVCNIIETGCFVRFL-GRLTGFAPRSKAVDGQRA------------DLSKTYYVGQSVRSNILDVNSETGRITL 828 (1924)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~-~~l~Glv~~s~~s~~~~~------------~~~~~f~~Gq~V~~~V~~id~~~~r~~l 828 (1924)
|+...|.|++|+++|+||++. +++.||+|.|.|++++.. +....|++||.|+|+|+++|++++++.+
T Consensus 4 ~~~F~g~Is~v~~~GifV~L~e~~~eGlI~~s~L~~d~y~~d~~~~~l~~~~~~~~~~~~Gd~V~V~v~~vd~~~r~I~~ 83 (87)
T d2ix0a3 4 DTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIA 83 (87)
T ss_dssp CCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEEEEEEcCeEEEEEecCCcEEEEEehhCCCceEEEeccceEEEEEEcccEEEECCCEEEEEEEEEecccCeEEE
Confidence 677899999999999999995 589999999999875421 1235699999999999999999999964
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.49 E-value=4e-07 Score=89.55 Aligned_cols=93 Identities=6% Similarity=-0.050 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000176 1785 VWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1863 (1924)
Q Consensus 1785 vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~ 1863 (1924)
.|+..|..+++. ++++|...|++++...|.+ +.+|..+|.++...|++++|...|+++++..|.+..+|..++..+.
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER--EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 95 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhccccccc--chhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHH
Confidence 355566666666 7777777777777776655 4677777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHH
Q 000176 1864 RLGDVDLIRGLFERAI 1879 (1924)
Q Consensus 1864 k~gd~~~ar~lferal 1879 (1924)
..|++++|...|+|.|
T Consensus 96 ~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 96 NEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHh
Confidence 7777777777777655
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=8.8e-08 Score=120.43 Aligned_cols=204 Identities=9% Similarity=-0.034 Sum_probs=112.3
Q ss_pred chHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhH--HHHHHHHHHHHHHcCCCCHHHHH
Q 000176 1659 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEK--LNIWVAYFNLENEYGNPPEEAVV 1736 (1924)
Q Consensus 1659 ~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ek--l~lWiayl~le~~~g~~~~e~a~ 1736 (1924)
+|...|++++..+|+....|..++..+.+.+++++| |++++...|...+..+ -.+|..- + ..+.
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~~~---------y--~~~i 69 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWNHA---------F--KNQI 69 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHHHH---------T--HHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHHHH---------H--HHHH
Confidence 467788999999999999999988888888877665 8898865442111100 1345210 1 2344
Q ss_pred HHHHHHHhcCCC---HHHHHHH-HHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 000176 1737 KVFQRALQYCDP---KKVHLAL-LGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1811 (1924)
Q Consensus 1737 ~vferAl~~~~~---~~i~~~l-~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~ 1811 (1924)
+.|+.+.+.... ......+ ..++...+.|+.|...|+++....+.....|..++..+.+. +.++|...+++++..
T Consensus 70 e~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 149 (497)
T d1ya0a1 70 TTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY 149 (497)
T ss_dssp HHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHH
T ss_pred HHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC
Confidence 555555543321 1222222 22334445566666666666665566677777777777776 777777777777765
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1812 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1812 ~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
.|. .++..+|.++...|++++|+..|++++...|++...|+.++.++...|+...|...|.|++.
T Consensus 150 ~~~----~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 150 ICQ----HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred CHH----HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 532 46677777777777777777777777777777777777777777777777777777777776
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=1.7e-06 Score=91.77 Aligned_cols=112 Identities=15% Similarity=0.045 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC
Q 000176 1751 VHLALLGLYERTEQNKLADELLYKMIKKFKHS---------------CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1814 (1924)
Q Consensus 1751 i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~---------------~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~ 1814 (1924)
.+...++.+.+.+++++|...|++++..++.. ..+|.+++..+++. ++++|...++++|...|.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~ 94 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 94 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc
Confidence 34456667777777777777777777766432 23455666666666 777777777777777666
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 000176 1815 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR 1864 (1924)
Q Consensus 1815 ~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k 1864 (1924)
+ +.+|...|.+++..|++++|+..|++++..+|++..+...+..+..+
T Consensus 95 ~--~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 95 N--EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred c--hhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 5 46677777777777777777777777777777766666655555443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.44 E-value=5.8e-07 Score=88.38 Aligned_cols=94 Identities=10% Similarity=-0.022 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
..++.++..+.+.|++++|...|++++...|.++.+|..+|..+.+. ++++|...|++|++..|.+ ..+|..+|..+
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~a~~~la~~y 94 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD--IAVHAALAVSH 94 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccccccc--ccchHHHHHHH
Confidence 34677888999999999999999999999999999999999999999 9999999999999999987 58999999999
Q ss_pred HHcCCHHHHHHHHHHHH
Q 000176 1829 FKNGVADRGRSMFEGIL 1845 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL 1845 (1924)
...|++++|...|++.|
T Consensus 95 ~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 95 TNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHh
Confidence 99999999999999976
|
| >d1y14b1 b.40.4.5 (B:81-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.38 E-value=4.2e-07 Score=85.57 Aligned_cols=67 Identities=12% Similarity=0.157 Sum_probs=59.9
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCccc----------CCCCccCCCCcEEEEEEEEEeCCCCEEEE
Q 000176 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV----------ESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434 (1924)
Q Consensus 1367 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~----------~~~~~~f~~G~~V~~kVl~vd~e~~ri~L 1434 (1924)
.|+++.|.|++++++|+||+++ .++|+||.++|.++|. .+..+.|+.|+.|+++|++++.+.++|..
T Consensus 3 ~Gev~~g~I~~v~~~G~fv~lg-~~eg~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~v~~~~~~i~~ 79 (91)
T d1y14b1 3 KGEVVDGTVVSCSQHGFEVQVG-PMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIHA 79 (91)
T ss_dssp TTCEEEEEEEEEETTEEEEEET-TEEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEETTEEEE
T ss_pred CCCEEEEEEEEEEeeEEEEEEc-CeEEEEEhhhcCcceEEccccceeEecccCeEEeCCCEEEEEEEEEecccCccEE
Confidence 6999999999999999999998 5899999999998764 23456799999999999999999999865
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.33 E-value=2.6e-06 Score=88.63 Aligned_cols=108 Identities=11% Similarity=0.012 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhcCCC----------------HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC
Q 000176 1752 HLALLGLYERTEQNKLADELLYKMIKKFKHS----------------CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1814 (1924)
Q Consensus 1752 ~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~----------------~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~ 1814 (1924)
|...++.+.+.|++.+|...|++++..++.. ..+|.+++..+++. ++++|...|++||...|.
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~ 99 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 99 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccch
Confidence 4445566667777777777777777654321 12444555555555 555555555555555554
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000176 1815 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1861 (1924)
Q Consensus 1815 ~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~l 1861 (1924)
+ +.+|...|..++..|+++.|+..|++++..+|++..++..+..+
T Consensus 100 ~--~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 144 (153)
T d2fbna1 100 N--VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 144 (153)
T ss_dssp C--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred h--hhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4 35555555555555555555555555555555555555544433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.32 E-value=7.1e-07 Score=96.84 Aligned_cols=97 Identities=14% Similarity=0.079 Sum_probs=90.6
Q ss_pred CHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000176 1782 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1860 (1924)
Q Consensus 1782 ~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~ 1860 (1924)
+..-....|..+++. ++++|...|++||...|.+ ..+|..+|..+++.|++++|...|++++...|++...|..++.
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~--~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV--AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 344455678888888 9999999999999999987 6899999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 000176 1861 QEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1861 le~k~gd~~~ar~lferal~ 1880 (1924)
++.+.|+++.|...|++|+.
T Consensus 81 ~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999997
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=7.1e-06 Score=86.85 Aligned_cols=115 Identities=11% Similarity=0.060 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 000176 1784 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-------------IKFISQTAILEFKNGVADRGRSMFEGILSEYP 1849 (1924)
Q Consensus 1784 ~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~-------------~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~P 1849 (1924)
..+...|..+++. ++++|...|++||..+|.... ..++..+|..+++.|++++|...++++|...|
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p 93 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 93 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc
Confidence 3455677788888 999999999999999876421 35678899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000176 1850 KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1901 (1924)
Q Consensus 1850 k~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~ 1901 (1924)
++..+|...+..+...|++++|+..|++++. +.|.+. .+...+......
T Consensus 94 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~P~n~-~~~~~l~~~~~~ 142 (170)
T d1p5qa1 94 NNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNK-AAKTQLAVCQQR 142 (170)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCH-HHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHhhhHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHH
Confidence 9999999999999999999999999999999 777666 455555444433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.30 E-value=7e-06 Score=86.67 Aligned_cols=111 Identities=12% Similarity=0.013 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCC
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHS---------------CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1813 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~---------------~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p 1813 (1924)
+.+...++.+.+.|++.+|...|.+++...+.. ..+|.+++..++.. ++++|...++++++..|
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p 95 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 95 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence 345566777888888888888888888654321 12333444444444 55555555555555544
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000176 1814 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1862 (1924)
Q Consensus 1814 ~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le 1862 (1924)
.+ +.+|...|..++..|++++|...|++++..+|++..++..+..+.
T Consensus 96 ~~--~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 96 AN--EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQ 142 (168)
T ss_dssp TC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred ch--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 43 344555555555555555555555555555555544444444443
|
| >d2c35b1 b.40.4.5 (B:78-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=1.3e-06 Score=82.62 Aligned_cols=67 Identities=7% Similarity=0.092 Sum_probs=58.9
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCccc------------CCCCccCCCCcEEEEEEEEEeCCCCEEEE
Q 000176 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV------------ESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434 (1924)
Q Consensus 1367 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~------------~~~~~~f~~G~~V~~kVl~vd~e~~ri~L 1434 (1924)
.|+++.|.|++++++|+||+|+ .++|+||.++|++++. .+....|+.|+.|++||++++.+.++|..
T Consensus 4 ~Gev~~g~V~~v~~~G~fv~lg-~~~~~v~~~~l~~d~~y~~~~~~~~~~~~~~~~~~~~Gd~VrvkV~~v~~~~~~I~~ 82 (94)
T d2c35b1 4 KGEVVDAVVTQVNKVGLFTEIG-PMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFA 82 (94)
T ss_dssp TTCEEEEEEEEEETTEEEEEET-TEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEETTEEEE
T ss_pred CCCEEEEEEEEEEeeEEEEEec-CceEEEEhhhcCcceeecccccceEEEcccceEEEeCCCEEEEEEEEEecCcCcceE
Confidence 6999999999999999999998 5899999999998752 23445789999999999999999999863
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.19 E-value=1.9e-05 Score=83.22 Aligned_cols=131 Identities=10% Similarity=0.037 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 000176 1784 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-------------IKFISQTAILEFKNGVADRGRSMFEGILSEYP 1849 (1924)
Q Consensus 1784 ~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~-------------~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~P 1849 (1924)
..+...|..+++. ++++|...|++||..++.... ..++...|..+++.|++++|...|+++|..+|
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p 95 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 95 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence 3455667778888 999999999999987765321 35677889999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHH
Q 000176 1850 KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEE-ERIEYVKQKAME 1917 (1924)
Q Consensus 1850 k~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~-~~~~~v~~rAle 1917 (1924)
++...|...+..+...|+++.|...|++++. +.|... .++..+..+....+.. +..+.+|.+..+
T Consensus 96 ~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~--l~P~n~-~~~~~l~~~~~~~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 96 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNK-AARLQIFMCQKKAKEHNERDRRTYANMFK 161 (168)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999 777776 5677666665444322 234444444433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.19 E-value=6.8e-06 Score=86.80 Aligned_cols=124 Identities=10% Similarity=0.015 Sum_probs=64.6
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC
Q 000176 1753 LALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1832 (1924)
Q Consensus 1753 ~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g 1832 (1924)
...++.+...+++++|.+.|+++++..+. .. +...........|. ...+|..+|..+++.|
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~-----------~~------~~~~~~~~~~~~~~--~~~~~~nla~~~~~~~ 91 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEG-----------SR------AAAEDADGAKLQPV--ALSCVLNIGACKLKMS 91 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------HH------HHSCHHHHGGGHHH--HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhh-----------hh------hhhhhHHHHHhChh--hHHHHHHHHHHHHhhc
Confidence 34556667778888888888877753210 00 00000111111111 1345555555566666
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000176 1833 VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1898 (1924)
Q Consensus 1833 ~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~ 1898 (1924)
++++|...|+++|+..|++..+|...+..+.+.|+++.|...|++++. +.|++. .++..+...
T Consensus 92 ~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~--l~p~n~-~~~~~l~~~ 154 (169)
T d1ihga1 92 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDK-AIQAELLKV 154 (169)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHH
T ss_pred ccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHH
Confidence 666666666666666666666666666666666666666666666665 444444 344444333
|
| >d2nn6g1 b.40.4.5 (G:107-194) S1-domain of exosome component 3 (RRP40) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome component 3 (RRP40) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=1.3e-06 Score=80.64 Aligned_cols=72 Identities=10% Similarity=0.053 Sum_probs=64.7
Q ss_pred CCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
++||+|-|+|+++..+|.||+|.. ...|++|++++. ..+++....|++||.|.|+|.++| ..++++||...+
T Consensus 5 ~~GD~ViG~V~~~~~~~~~VdI~s-~~~a~L~~~~f~-g~~k~~r~~l~~GD~V~arV~~v~-~~~~~~Lscvd~ 76 (88)
T d2nn6g1 5 VKGDHVIGIVTAKSGDIFKVDVGG-SEPASLSYLSFE-GATKRNRPNVQVGDLIYGQFVVAN-KDMEPEMVCIDS 76 (88)
T ss_dssp CSSEEEEEEEEEEETTEEEEECSS-SSCCCEESCSSS-CCSSCSSSSSCTTCEEEEEEEECC-TTSCCEEECSBT
T ss_pred CCCCEEEEEEEEEeCCeEEEEcCC-CeeEEEeHHHcC-ccccccCcccCCCCEEEEEEEEeC-CCCCEEEEEEcc
Confidence 689999999999999999999975 789999999995 467788899999999999999999 568999988654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.16 E-value=1.7e-05 Score=82.30 Aligned_cols=112 Identities=13% Similarity=0.001 Sum_probs=95.6
Q ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 000176 1785 VWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH--------------IKFISQTAILEFKNGVADRGRSMFEGILSEYP 1849 (1924)
Q Consensus 1785 vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~--------------~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~P 1849 (1924)
.|..-|.-+++. ++.+|...|++|+..++.... +.++...|..++++|++++|...|+++|..+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p 98 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 98 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccc
Confidence 344556667778 999999999999998875432 35778899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 000176 1850 KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYE 1899 (1924)
Q Consensus 1850 k~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E 1899 (1924)
.+..+|...+..+...|+++.|+..|++++. +.|.+. .++..+....
T Consensus 99 ~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~-~~~~~l~~~~ 145 (153)
T d2fbna1 99 NNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNL-DIRNSYELCV 145 (153)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCH-HHHHHHHHHH
T ss_pred hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHH
Confidence 9999999999999999999999999999999 777777 4666655443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=1.2e-05 Score=80.76 Aligned_cols=104 Identities=10% Similarity=0.010 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh-----HHHHHHHH
Q 000176 1752 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-----IKFISQTA 1825 (1924)
Q Consensus 1752 ~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~-----~~~~~~~A 1825 (1924)
|..+++.|.+.+++++|...|++++...|.+..+|.+++..+.+. ++++|...|++|++..|.+.. ..++...|
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 556778888888888888888888888888888888888888888 888888888888887765431 24566677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000176 1826 ILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1856 (1924)
Q Consensus 1826 ~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~ 1856 (1924)
..+...+++++|...|++++...|. .++..
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~ 116 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAEHRT-PDVLK 116 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCC-HHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCC-HHHHH
Confidence 7777788888888888888877664 34433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=6e-06 Score=82.15 Aligned_cols=96 Identities=11% Similarity=0.032 Sum_probs=83.1
Q ss_pred HHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Q 000176 1789 RVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG---VADRGRSMFEGILSEYPKR--TDLWSIYLDQE 1862 (1924)
Q Consensus 1789 ~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g---~~e~Ar~lfe~aL~~~Pk~--~dlw~~y~~le 1862 (1924)
++..+... ++++|++.|+++|+..|.+ +.++..||.++++.+ ++++|..+|++++...|+. .++|+.++..+
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~--~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAGSVS--KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45556666 8999999999999999987 699999999998655 5567999999999988764 56899999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1863 IRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1863 ~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
.+.|++++|+..|++++. +.|...
T Consensus 83 ~~~g~~~~A~~~~~~aL~--~~P~~~ 106 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ--TEPQNN 106 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHhhhHHHHHHHHHHHH--hCcCCH
Confidence 999999999999999999 667665
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.12 E-value=4.8e-06 Score=85.73 Aligned_cols=113 Identities=14% Similarity=0.024 Sum_probs=88.6
Q ss_pred HHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000176 1759 YERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-----------QQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1827 (1924)
Q Consensus 1759 ~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-----------~~~~A~~l~~ral~~~p~~~~~~~~~~~A~l 1827 (1924)
|.+.+.+++|...|+++++..|.++.+|+.++..+... .+++|...|++|++..|.+ ..+|..+|..
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~--~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK--DEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchh--hHHHhhHHHH
Confidence 55667788999999999999999999999999888743 4688999999999999887 5889999988
Q ss_pred HHHcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1828 EFKNGV-----------ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1828 e~~~g~-----------~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
+...|. +++|...|++++...|++...|..+...+ +|..++..+..
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-------ka~~~~~e~~k 141 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA-------KAPQLHAEAYK 141 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------THHHHHHHHHH
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 876553 68899999999999999877776554432 44455555443
|
| >d2nn6g1 b.40.4.5 (G:107-194) S1-domain of exosome component 3 (RRP40) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome component 3 (RRP40) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=2.3e-06 Score=79.04 Aligned_cols=73 Identities=14% Similarity=0.111 Sum_probs=66.7
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeeccc
Q 000176 1366 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~ 1440 (1924)
++||+|-|+|++++.+|.||+|+....|++|++++. .+.++.+..|++||.|.|+|.+++ ..+++.||...+.
T Consensus 5 ~~GD~ViG~V~~~~~~~~~VdI~s~~~a~L~~~~f~-g~~k~~r~~l~~GD~V~arV~~v~-~~~~~~Lscvd~~ 77 (88)
T d2nn6g1 5 VKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFE-GATKRNRPNVQVGDLIYGQFVVAN-KDMEPEMVCIDSC 77 (88)
T ss_dssp CSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSSS-CCSSCSSSSSCTTCEEEEEEEECC-TTSCCEEECSBTT
T ss_pred CCCCEEEEEEEEEeCCeEEEEcCCCeeEEEeHHHcC-ccccccCcccCCCCEEEEEEEEeC-CCCCEEEEEEccc
Confidence 689999999999999999999999999999999995 467888899999999999999999 4789999987654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=2.8e-05 Score=96.93 Aligned_cols=192 Identities=7% Similarity=-0.075 Sum_probs=113.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHH-HHHcCCCCHHHHHHHHHH
Q 000176 1663 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL-ENEYGNPPEEAVVKVFQR 1741 (1924)
Q Consensus 1663 ~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~l-e~~~g~~~~e~a~~vfer 1741 (1924)
.|+++|..+|+.+........ +-...+..+.+.++...+.... .+.. .+...|..+ ....+.| +.|...|++
T Consensus 39 aye~~i~~dp~~a~~~~~e~~--Lw~~~y~~~ie~~r~~~k~~~~-~~~~--~~~~~~~~~l~~a~~~Y--~~ai~~l~~ 111 (497)
T d1ya0a1 39 LYQKMLVTDLEYALDKKVEQD--LWNHAFKNQITTLQGQAKNRAN-PNRS--EVQANLSLFLEAASGFY--TQLLQELCT 111 (497)
T ss_dssp HHHHHHHHCHHHHHHHTHHHH--HHHHHTHHHHHHHHHHHSCSSC-TTTT--HHHHHHHHHHHHHHHHH--HHHHHHHTC
T ss_pred HHHHHHHcChhhHHHHhHHHH--HHHHHHHHHHHHHHHhcccccC-ccHH--HHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 488888888864443211111 1011234556666666643321 1111 122222222 2223322 566666666
Q ss_pred HHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHH
Q 000176 1742 ALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIK 1819 (1924)
Q Consensus 1742 Al~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~ 1819 (1924)
+++..+.. ..|..++..+...+++++|...|++++... ...+|+.+|..+... ++++|+..|++|+...|... .
T Consensus 112 ~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~--~ 187 (497)
T d1ya0a1 112 VFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG--Q 187 (497)
T ss_dssp -------------------------------CCHHHHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS--H
T ss_pred HHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCch--H
Confidence 66666554 789999999999999999999999998765 346889999999888 99999999999999999985 8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 000176 1820 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1865 (1924)
Q Consensus 1820 ~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~ 1865 (1924)
.|.++|.++...|+..+|...|.++|...|....+|..+..++.+.
T Consensus 188 ~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 188 PYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999988877654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.98 E-value=2e-05 Score=82.98 Aligned_cols=107 Identities=11% Similarity=-0.061 Sum_probs=85.3
Q ss_pred HHHHhCChHHHHHHHHHHHHhcC---------CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000176 1758 LYERTEQNKLADELLYKMIKKFK---------HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1827 (1924)
Q Consensus 1758 i~~~~gk~e~A~~~fe~~lk~~~---------~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~l 1827 (1924)
+......|.+|.+++........ ....+|.+++..+.+. ++++|...|.+||+..|.+ ..+|...|..
T Consensus 43 y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~--~~a~~~~g~~ 120 (169)
T d1ihga1 43 WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN--TKALYRRAQG 120 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhh--hhHHHhHHHH
Confidence 33444778888888888777653 3455778888888888 8999999999999888876 5888999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000176 1828 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1866 (1924)
Q Consensus 1828 e~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~g 1866 (1924)
++..|+++.|...|++++...|++.+++..+..++.+..
T Consensus 121 ~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~ 159 (169)
T d1ihga1 121 WQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 159 (169)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999988888888777765543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=2.3e-05 Score=78.52 Aligned_cols=95 Identities=9% Similarity=0.081 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH-------
Q 000176 1785 VWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS------- 1856 (1924)
Q Consensus 1785 vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~------- 1856 (1924)
.|...|..++.. ++++|...|.++|+..|.+ ..+|..+|..+++.|++++|...|++++...|+....|.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTN--MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--HHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 466788889999 9999999999999999986 589999999999999999999999999998887665444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc
Q 000176 1857 IYLDQEIRLGDVDLIRGLFERAISL 1881 (1924)
Q Consensus 1857 ~y~~le~k~gd~~~ar~lferal~~ 1881 (1924)
..++.+...++++.|...|++++..
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 4555566778999999999999883
|
| >d1hh2p1 b.40.4.5 (P:127-198) S1 domain of NusA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 domain of NusA species: Thermotoga maritima [TaxId: 2336]
Probab=97.91 E-value=2.9e-05 Score=68.39 Aligned_cols=65 Identities=20% Similarity=0.368 Sum_probs=57.4
Q ss_pred CCCEEEEEEEEEecCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCEEEEEEEEEecccCCceEEEEee
Q 000176 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1333 (1924)
Q Consensus 1259 ~G~~v~g~V~~v~~~~~g~~V~l~~~~~G~v~~selsd~~~~~p~~~~~~G~~v~~~Vl~vd~~~~~~~~i~LSl 1333 (1924)
+|++++|+|.++.+. +++|+|| +.+|++|.+|.. |.+.|++|+.|+|+|.+++.+.+| .+|.||.
T Consensus 8 ~geiv~G~V~r~~~~--~~~Vdlg-~~eaiLp~~eqi------p~E~~~~Gdrik~~i~~V~~~~kg-pqI~lSR 72 (72)
T d1hh2p1 8 KGTVTTAEVIRVMGE--WADIRIG-KLETRLPKKEWI------PGEEIKAGDLVKVYIIDVVKTTKG-PKILVSR 72 (72)
T ss_dssp TTCEEEEEEEEECSS--EEEEEET-TEEEEEEGGGSC------TTCCCCTTCEEEEEEEEEEEETTE-EEEEEES
T ss_pred cCcEEEEEEEEEcCC--CEEEEEC-CcEEECCHHHcC------CCCCCCCCCEEEEEEEEEEEcCCC-CeEEEeC
Confidence 899999999999988 9999998 799999999873 789999999999999999876553 5777773
|
| >d2ja9a1 b.40.4.5 (A:62-151) S1-domain of exosome component 3 (RRP40) {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome component 3 (RRP40) species: Saccharomyces cerevisiae [TaxId: 4932]
Probab=97.89 E-value=1.2e-05 Score=74.46 Aligned_cols=74 Identities=20% Similarity=0.134 Sum_probs=68.0
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeeccc
Q 000176 1366 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~ 1440 (1924)
++||+|-|+|.++...+.||+|+....|++|.+..++...++.+..|.+||.|.|+|.++++ .+.++||.+...
T Consensus 6 ~~gD~ViG~V~~~~~~~~~vdI~~~~~~~L~~~~~f~g~~k~~r~~l~~GDlV~arV~~v~~-~~~~~Lsc~~~~ 79 (90)
T d2ja9a1 6 SVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAEK-ELEAEIECFDST 79 (90)
T ss_dssp CTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSSTTCCSSSCCCCCTTCEEEEEEEECCT-TSCCEEESSCTT
T ss_pred CCCCEEEEEEEEEeCCcEEEEcCCcchhhhhhhhccCccccccCCccCCCCEEEEEEEEECC-CCCEEEEEeccc
Confidence 68999999999999999999999889999999998988888899999999999999999995 778999987643
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.88 E-value=0.0021 Score=71.96 Aligned_cols=224 Identities=10% Similarity=-0.099 Sum_probs=124.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHH-cC-CCCHHHHHHHHHHHHhcCCCHHH
Q 000176 1674 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE-YG-NPPEEAVVKVFQRALQYCDPKKV 1751 (1924)
Q Consensus 1674 s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~-~g-~~~~e~a~~vferAl~~~~~~~i 1751 (1924)
++..|+.++.++.+.+++++|.+.|++|.+.-+ ...+..+..+... .+ ..+...|...++.+...... ..
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~-------~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~-~a 72 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKE-------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS-NG 72 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH-HH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHcCCCcchhHHHHHHhhccccccccc-ch
Confidence 356777777777777777777777777764321 1233333333332 11 11456677777777665432 34
Q ss_pred HHHHHHHHHH----hCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHhCCCCChHHHHH
Q 000176 1752 HLALLGLYER----TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-----QQEGVQAVVQRALLSLPRHKHIKFIS 1822 (1924)
Q Consensus 1752 ~~~l~~i~~~----~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-----~~~~A~~l~~ral~~~p~~~~~~~~~ 1822 (1924)
+..++.++.. ..+.+.|...|+++...- .......++..+... ....|...+.+..... ....+.
T Consensus 73 ~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g--~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~ 146 (265)
T d1ouva_ 73 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----DGDGCT 146 (265)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHH
T ss_pred hhccccccccccccchhhHHHHHHHhhhhhhh--hhhHHHhhcccccCCCcccchhHHHHHHhhhhhccc----ccchhh
Confidence 4455555543 345667777777776542 344444444444432 5666666666665432 135666
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000176 1823 QTAILEFK----NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR----LGDVDLIRGLFERAISLSLPPKKMKFLFKK 1894 (1924)
Q Consensus 1823 ~~A~le~~----~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k----~gd~~~ar~lferal~~~~~pk~~k~lw~~ 1894 (1924)
.+|.++.. ..+.+.+...++.+.. +.+.+.+..++.++.. ..++++|..+|+++.....+ .+ .|..
T Consensus 147 ~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~--~a--~~~L 220 (265)
T d1ouva_ 147 ILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENG--GG--CFNL 220 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCH--HH--HHHH
T ss_pred hhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcccCH--HH--HHHH
Confidence 67776664 3356666666666653 3456667777766665 45677777777777763221 12 2221
Q ss_pred HHHHHHHcC---CHHHHHHHHHHHHH
Q 000176 1895 YLEYEKSVG---EEERIEYVKQKAME 1917 (1924)
Q Consensus 1895 yl~~E~~~G---~~~~~~~v~~rAle 1917 (1924)
=.-++...| |.+.|...|++|.+
T Consensus 221 G~~y~~G~g~~~n~~~A~~~~~kAa~ 246 (265)
T d1ouva_ 221 GAMQYNGEGVTRNEKQAIENFKKGCK 246 (265)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHH
Confidence 111222222 56667777766654
|
| >d2ja9a1 b.40.4.5 (A:62-151) S1-domain of exosome component 3 (RRP40) {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of exosome component 3 (RRP40) species: Saccharomyces cerevisiae [TaxId: 4932]
Probab=97.86 E-value=1.5e-05 Score=73.70 Aligned_cols=73 Identities=15% Similarity=0.138 Sum_probs=66.2
Q ss_pred CCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
++||+|-|+|.++..+|.||+|.. ...|++|.++..+...++....|++||.|.|+|.++| ..+.+.||.+.+
T Consensus 6 ~~gD~ViG~V~~~~~~~~~vdI~~-~~~~~L~~~~~f~g~~k~~r~~l~~GDlV~arV~~v~-~~~~~~Lsc~~~ 78 (90)
T d2ja9a1 6 SVNDFVIGVIIGTFSDSYKVSLQN-FSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAE-KELEAEIECFDS 78 (90)
T ss_dssp CTTCEEEEEEEEECSSEEEEESST-TSCCEEEETTSSTTCCSSSCCCCCTTCEEEEEEEECC-TTSCCEEESSCT
T ss_pred CCCCEEEEEEEEEeCCcEEEEcCC-cchhhhhhhhccCccccccCCccCCCCEEEEEEEEEC-CCCCEEEEEecc
Confidence 689999999999999999999964 6889999999888888888999999999999999999 567899998764
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.71 E-value=5.2e-05 Score=77.68 Aligned_cols=88 Identities=15% Similarity=0.156 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000176 1797 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN----------GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1866 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~----------g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~g 1866 (1924)
.+++|+..|++|++..|.+ ..+|..+|..+... +.+++|...|+++++..|++.+.|..++..+...|
T Consensus 12 ~fe~A~~~~e~al~~~P~~--~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g 89 (145)
T d1zu2a1 12 LFEQIRQDAENTYKSNPLD--ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 89 (145)
T ss_dssp HHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCCcc--hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcc
Confidence 6899999999999999998 58999999888743 45689999999999999999999999998887654
Q ss_pred -----------CHHHHHHHHHHHHhcCCCchhH
Q 000176 1867 -----------DVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1867 -----------d~~~ar~lferal~~~~~pk~~ 1888 (1924)
.+++|...|++|+. +.|...
T Consensus 90 ~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~ 120 (145)
T d1zu2a1 90 FLTPDETEAKHNFDLATQFFQQAVD--EQPDNT 120 (145)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCH
T ss_pred cchhhHHHHHHhHHHhhhhhhcccc--cCCCHH
Confidence 35789999999998 777666
|
| >d1hh2p1 b.40.4.5 (P:127-198) S1 domain of NusA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 domain of NusA species: Thermotoga maritima [TaxId: 2336]
Probab=97.69 E-value=9e-05 Score=65.15 Aligned_cols=63 Identities=17% Similarity=0.258 Sum_probs=54.7
Q ss_pred CCCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCCCCCCCCCCCCCCCEEEEEEEEEcCCCCE--EEEE
Q 000176 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR--INLS 653 (1924)
Q Consensus 584 ~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~~r--i~lS 653 (1924)
+.|+++.|+|.++.+.+++|++ |++.|+||.+|+. |.+.|++|+.++|.|.+|+...+. +.||
T Consensus 7 ~~geiv~G~V~r~~~~~~~Vdl-g~~eaiLp~~eqi------p~E~~~~Gdrik~~i~~V~~~~kgpqI~lS 71 (72)
T d1hh2p1 7 LKGTVTTAEVIRVMGEWADIRI-GKLETRLPKKEWI------PGEEIKAGDLVKVYIIDVVKTTKGPKILVS 71 (72)
T ss_dssp CTTCEEEEEEEEECSSEEEEEE-TTEEEEEEGGGSC------TTCCCCTTCEEEEEEEEEEEETTEEEEEEE
T ss_pred ccCcEEEEEEEEEcCCCEEEEE-CCcEEECCHHHcC------CCCCCCCCCEEEEEEEEEEEcCCCCeEEEe
Confidence 4799999999999999999999 6899999999984 668999999999999999866543 4444
|
| >d2nn6i1 b.40.4.5 (I:61-185) Exosome component 1, EXOSC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Exosome component 1, EXOSC1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=9.9e-05 Score=72.63 Aligned_cols=74 Identities=19% Similarity=0.260 Sum_probs=61.7
Q ss_pred CCCcEEEEEEEEeecceEEEEEec-------CceeEEeeccccC--cccccCcccccCCCcEEEEEEEEEecCCCeeEEe
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIEN-------TNLVGLCHVSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1526 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~-------~~v~gl~h~sels--~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~ls 1526 (1924)
++||+|-|+|+++.+..++|+|.. ..+.|++|.+++. +....++.+.|++||.|+|+|+++...+.-+.||
T Consensus 6 ~vGDiVig~V~~v~~~~a~v~I~~v~~~~l~~~~~g~i~~~dvr~te~d~~~m~~~fr~GDiV~A~Vis~~~~~~~~~Ls 85 (125)
T d2nn6i1 6 DVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYLLT 85 (125)
T ss_dssp CTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEEEEecCCEEEEEEeEecCcccccCccccccHHHcccchhhhhhHHHhcCCCCEEEEEEEEccCCCccEEEE
Confidence 689999999999999999999942 2577999999994 3444568899999999999999998655568888
Q ss_pred ccc
Q 000176 1527 MKS 1529 (1924)
Q Consensus 1527 lK~ 1529 (1924)
.+.
T Consensus 86 t~~ 88 (125)
T d2nn6i1 86 TAE 88 (125)
T ss_dssp CCS
T ss_pred ecC
Confidence 755
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.54 E-value=0.0051 Score=68.61 Aligned_cols=210 Identities=12% Similarity=-0.036 Sum_probs=155.5
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHc--
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLS----MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEY-- 1727 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~----~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~-- 1727 (1924)
+++..+|...|+++.. .++...+..++.++.. ..++.+|+..++.+...... ..|..+..+....
T Consensus 15 ~~d~~~A~~~~~kAa~--~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~-------~a~~~l~~~~~~~~~ 85 (265)
T d1ouva_ 15 EKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS-------NGCHLLGNLYYSGQG 85 (265)
T ss_dssp TTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccccc-------chhhccccccccccc
Confidence 3457788899999854 5788999999999887 56899999999999865431 2344333333321
Q ss_pred CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----hCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-----CH
Q 000176 1728 GNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER----TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-----QQ 1798 (1924)
Q Consensus 1728 g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~----~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-----~~ 1798 (1924)
.....+.|...|++|....+. .....++..+.. ......|...+..... ......|..++.++... +.
T Consensus 86 ~~~~~~~a~~~~~~a~~~g~~-~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~~ 162 (265)
T d1ouva_ 86 VSQNTNKALQYYSKACDLKYA-EGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSLYDAGRGTPKDL 162 (265)
T ss_dssp SCCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred cchhhHHHHHHHhhhhhhhhh-hHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhhhhccCCCccccc
Confidence 112468899999999876543 344445555543 3345666677766665 35788999999999873 78
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHH
Q 000176 1799 EGVQAVVQRALLSLPRHKHIKFISQTAILEFK----NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR----LGDVDL 1870 (1924)
Q Consensus 1799 ~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~----~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k----~gd~~~ 1870 (1924)
..+...++++.... +..++..+|.+++. ..++++|..+|+++... .+...+..++.++.+ ..+++.
T Consensus 163 ~~~~~~~~~a~~~g----~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~ 236 (265)
T d1ouva_ 163 KKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQ 236 (265)
T ss_dssp HHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTT
T ss_pred ccchhhhhcccccc----ccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHH
Confidence 88999999988642 35889999988886 55899999999999876 457888899998875 348889
Q ss_pred HHHHHHHHHhc
Q 000176 1871 IRGLFERAISL 1881 (1924)
Q Consensus 1871 ar~lferal~~ 1881 (1924)
|...|++|...
T Consensus 237 A~~~~~kAa~~ 247 (265)
T d1ouva_ 237 AIENFKKGCKL 247 (265)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHC
Confidence 99999999983
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.50 E-value=0.00025 Score=75.17 Aligned_cols=118 Identities=15% Similarity=0.075 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEF 1829 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~ 1829 (1924)
..+...+......|++++|.+.|.+++..++...-.++....+.. ..+.. +.. ..+.+|...+..+.
T Consensus 12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~----~~r~~-l~~--------~~~~a~~~la~~~~ 78 (179)
T d2ff4a2 12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVE----PFATA-LVE--------DKVLAHTAKAEAEI 78 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHH----HHHHH-HHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHH----HHHHH-HHH--------HHHHHHHHHHHHHH
Confidence 456667777888999999999999999888655433332222111 11111 111 12578999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1830 KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1830 ~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
..|++++|...+++++..+|.+..+|..++..+.+.|++..|...|+++..
T Consensus 79 ~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 79 ACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999854
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.49 E-value=2.8e-05 Score=88.05 Aligned_cols=124 Identities=10% Similarity=-0.013 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHH
Q 000176 1731 PEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRA 1808 (1924)
Q Consensus 1731 ~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ra 1808 (1924)
+.++|...|+++++.+|.+ ..|..|+.+|...|++++|...|+++++..|+....|..|+..+... ..+++...+.+.
T Consensus 11 ~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~ 90 (264)
T d1zbpa1 11 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATA 90 (264)
T ss_dssp CHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCCE
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhhhh
Confidence 4588888888888888875 88888888888888888888888888888888888888888776654 444443333322
Q ss_pred HHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 000176 1809 LLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLW 1855 (1924)
Q Consensus 1809 l~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw 1855 (1924)
....+ ......+...|......|+.++|.+++++++...|....+|
T Consensus 91 ~~~~~-p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 91 KVLGE-NEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp ECCCS-CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred hcccC-chHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 22211 12245566667777788888888888888888887765544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.47 E-value=0.0001 Score=83.32 Aligned_cols=65 Identities=14% Similarity=0.063 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000176 1797 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1863 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~ 1863 (1924)
++++|.+.|+++++..|.+ ..++..+++++...|++++|...|+++++..|+....|..|..++.
T Consensus 11 ~l~eAl~~l~~al~~~P~d--~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~ 75 (264)
T d1zbpa1 11 QLQQALELLIEAIKASPKD--ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK 75 (264)
T ss_dssp CHHHHHHHHHHHHHTCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 5555555555555555554 3555555555555555555555555555555555555555555443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.44 E-value=0.00032 Score=65.92 Aligned_cols=80 Identities=10% Similarity=0.054 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCC-----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000176 1783 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH-----KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1856 (1924)
Q Consensus 1783 ~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~-----~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~ 1856 (1924)
.+-++.+|..++++ ++++|...|++|++..|.. ....++..+|..+++.|++++|+..|+++|+..|++..++.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 44566777777777 7888888888877765432 22467888888888888888888888888888888888887
Q ss_pred HHHHHH
Q 000176 1857 IYLDQE 1862 (1924)
Q Consensus 1857 ~y~~le 1862 (1924)
.+..++
T Consensus 85 Nl~~~~ 90 (95)
T d1tjca_ 85 NLKYFE 90 (95)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765444
|
| >d2asba1 b.40.4.5 (A:108-183) S1 domain of NusA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 domain of NusA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.39 E-value=0.00022 Score=63.25 Aligned_cols=69 Identities=32% Similarity=0.467 Sum_probs=57.0
Q ss_pred CCCCEEEEEEEEEecCc--CeEEEEeC---CceEEEEecccccccccCCCCCCCCCCCEEEEEEEEEecccCCceEEEEe
Q 000176 1258 HEGDIVGGRISKILSGV--GGLVVQIG---PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332 (1924)
Q Consensus 1258 ~~G~~v~g~V~~v~~~~--~g~~V~l~---~~~~G~v~~selsd~~~~~p~~~~~~G~~v~~~Vl~vd~~~~~~~~i~LS 1332 (1924)
++|++++|.|.++.... ..++|+|| .+.+|++|.+|. -|.+.|++|+.|+|+|.+++...+| ..|.||
T Consensus 3 r~geiv~G~V~r~~~~~~~~~v~vdlG~~~~~~EaiLp~~eq------ip~E~y~~Gdrik~~i~~V~~~~kG-p~IilS 75 (76)
T d2asba1 3 REGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQ------VPGESYEHGNRLRCYVVGVTRGARE-PLITLS 75 (76)
T ss_dssp CTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGS------CTTCCCCTTCEEEEEEEEEECCSSS-CEEEEE
T ss_pred ccceEEEEEEEEEecCCCceEEEEECCCCCCCEEEECCHHHc------CCCcccCCCCEEEEEEEEEEecCCC-CEEEEe
Confidence 38999999999987531 14899998 479999999886 3789999999999999999987664 577777
Q ss_pred e
Q 000176 1333 L 1333 (1924)
Q Consensus 1333 l 1333 (1924)
.
T Consensus 76 R 76 (76)
T d2asba1 76 R 76 (76)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.38 E-value=0.00018 Score=74.33 Aligned_cols=94 Identities=10% Similarity=-0.037 Sum_probs=61.1
Q ss_pred HHHHHHhCChHHHHHHHHHHHHhcCCC------------HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCC-------
Q 000176 1756 LGLYERTEQNKLADELLYKMIKKFKHS------------CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH------- 1815 (1924)
Q Consensus 1756 ~~i~~~~gk~e~A~~~fe~~lk~~~~~------------~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~------- 1815 (1924)
+..+.+.|+|++|.+.|++++..++.. ..+|.+++..+... ++++|...+++++..+|..
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 556667778888888888887766432 24566667767666 7777777777777654321
Q ss_pred --ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 000176 1816 --KHIKFISQTAILEFKNGVADRGRSMFEGILSEYP 1849 (1924)
Q Consensus 1816 --~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~P 1849 (1924)
....++...|..+...|++++|...|++++...|
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 0123556667777777777777777777766544
|
| >d2asba1 b.40.4.5 (A:108-183) S1 domain of NusA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1 domain of NusA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.23 E-value=0.00038 Score=61.60 Aligned_cols=64 Identities=25% Similarity=0.431 Sum_probs=52.8
Q ss_pred CCCcEEEEEEEEEEcce----EEEEEc---CCeEEEeeCcccCCCCCCCCCCCCCCCCEEEEEEEEEcCCCC--EEEEE
Q 000176 584 TDRLITHGWITKIEKHG----CFVRFY---NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR--RINLS 653 (1924)
Q Consensus 584 ~~G~~~~G~V~~i~~~G----~~V~f~---~~v~g~lp~sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~~--ri~lS 653 (1924)
+.|+++.|+|..+.... ++|+++ +++.|+||.+|. -|.+.|+.|+.++|.|.+|+...+ +|.||
T Consensus 3 r~geiv~G~V~r~~~~~~~~~v~vdlG~~~~~~EaiLp~~eq------ip~E~y~~Gdrik~~i~~V~~~~kGp~IilS 75 (76)
T d2asba1 3 REGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQ------VPGESYEHGNRLRCYVVGVTRGAREPLITLS 75 (76)
T ss_dssp CTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGS------CTTCCCCTTCEEEEEEEEEECCSSSCEEEEE
T ss_pred ccceEEEEEEEEEecCCCceEEEEECCCCCCCEEEECCHHHc------CCCcccCCCCEEEEEEEEEEecCCCCEEEEe
Confidence 47999999999987542 899996 579999999998 466889999999999999986543 45554
|
| >d2nn6i1 b.40.4.5 (I:61-185) Exosome component 1, EXOSC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Exosome component 1, EXOSC1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.19 E-value=0.00045 Score=67.81 Aligned_cols=75 Identities=15% Similarity=0.177 Sum_probs=63.9
Q ss_pred CCCCEEEEEEEEEeeceEEEEe--------CCCcEEEEECccCC--CcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEE
Q 000176 1366 SPNMIVQGYVKNVTSKGCFIML--------SRKLDAKVLLSNLS--DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~fV~l--------~~~v~g~v~~sels--d~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LS 1435 (1924)
++|++|-|+|+++....++|++ +....|++|.+++. +.+..+..+.|++||.|.++|+++...+..+.||
T Consensus 6 ~vGDiVig~V~~v~~~~a~v~I~~v~~~~l~~~~~g~i~~~dvr~te~d~~~m~~~fr~GDiV~A~Vis~~~~~~~~~Ls 85 (125)
T d2nn6i1 6 DVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYLLT 85 (125)
T ss_dssp CTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEEEEecCCEEEEEEeEecCcccccCccccccHHHcccchhhhhhHHHhcCCCCEEEEEEEEccCCCccEEEE
Confidence 6899999999999999999998 44677999999984 4455678899999999999999998655679999
Q ss_pred eeccc
Q 000176 1436 LKTSD 1440 (1924)
Q Consensus 1436 lk~~~ 1440 (1924)
.+..+
T Consensus 86 t~~~~ 90 (125)
T d2nn6i1 86 TAENE 90 (125)
T ss_dssp CCSSS
T ss_pred ecCCC
Confidence 87744
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.11 E-value=0.0012 Score=67.97 Aligned_cols=91 Identities=14% Similarity=-0.032 Sum_probs=75.2
Q ss_pred HHHHHhc-CHHHHHHHHHHHHHhCCCCC----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------
Q 000176 1790 VQRLLKQ-QQEGVQAVVQRALLSLPRHK----------HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR------- 1851 (1924)
Q Consensus 1790 a~~l~~~-~~~~A~~l~~ral~~~p~~~----------~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~------- 1851 (1924)
+..+++. ++++|...|++||...|... ...+|..+|..+...|+++.|...|+++|..+|+.
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 5556666 89999999999999877532 13578899999999999999999999999875431
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1852 ----TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1852 ----~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
..+|+.++..+...|++++|...|++|+.
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22567788999999999999999999997
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.06 E-value=0.0011 Score=70.14 Aligned_cols=123 Identities=8% Similarity=-0.108 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000176 1784 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1862 (1924)
Q Consensus 1784 ~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le 1862 (1924)
..+...+..+... ++++|.+.|.+||...+.... .+.. .+. -++.......+...++|..++..+
T Consensus 12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l--~~~~-------~~~-----w~~~~r~~l~~~~~~a~~~la~~~ 77 (179)
T d2ff4a2 12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVL--DDLR-------DFQ-----FVEPFATALVEDKVLAHTAKAEAE 77 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTT--GGGT-------TST-----THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccccc--ccCc-------chH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777 899999999999988776521 0000 011 111111222334467899999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 000176 1863 IRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1923 (1924)
Q Consensus 1863 ~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~~~ 1923 (1924)
...|+++.|...|++++. ..|.+. ..|..++......|+..+|..+|+++...+...+
T Consensus 78 ~~~g~~~~Al~~~~~al~--~~P~~e-~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eL 135 (179)
T d2ff4a2 78 IACGRASAVIAELEALTF--EHPYRE-PLWTQLITAYYLSDRQSDALGAYRRVKTTLADDL 135 (179)
T ss_dssp HHTTCHHHHHHHHHHHHH--HSTTCH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCchHHHHHHHHHHH--hCCccH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999 777777 6899999999999999999999999988877644
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.04 E-value=0.0012 Score=61.69 Aligned_cols=78 Identities=9% Similarity=0.057 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHH
Q 000176 1751 VHLALLGLYERTEQNKLADELLYKMIKKFKH-------SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFIS 1822 (1924)
Q Consensus 1751 i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~-------~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~ 1822 (1924)
-++.++.++.+.|++.+|...|+++++.++. ...++..++..+.+. ++++|...|+++|+..|.+ ..++.
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~--~~a~~ 84 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH--QRANG 84 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCC--HHHHH
Confidence 4667888888999999999999998887542 256788888888888 9999999999999998887 47777
Q ss_pred HHHHHHHH
Q 000176 1823 QTAILEFK 1830 (1924)
Q Consensus 1823 ~~A~le~~ 1830 (1924)
.++.++..
T Consensus 85 Nl~~~~~~ 92 (95)
T d1tjca_ 85 NLKYFEYI 92 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.48 E-value=0.0065 Score=58.76 Aligned_cols=75 Identities=7% Similarity=0.034 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHhc----CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000176 1781 HSCKVWLRRVQRLLKQ----QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1856 (1924)
Q Consensus 1781 ~~~~vw~~~a~~l~~~----~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~ 1856 (1924)
.+....++||-.+.+. +.+++..+|+.+++..|.+ +.+.|+.+|..+++.|++++|+..++++|...|.+..++.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~-~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~ 111 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchh-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence 4567778888777765 6778888888888877654 3578888888888888888888888888888888877654
|
| >d1smxa_ b.40.4.5 (A:) S1-domain of Ribonuclease E {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of Ribonuclease E species: Escherichia coli [TaxId: 562]
Probab=96.03 E-value=0.008 Score=54.49 Aligned_cols=73 Identities=21% Similarity=0.196 Sum_probs=55.9
Q ss_pred CEEEEEEEEEecCcCeEEEEeCCceEEEEecccccccccCC---------CCCCCCCCCEEEEEEEEEecccCCceEEEE
Q 000176 1261 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD---------PLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1331 (1924)
Q Consensus 1261 ~~v~g~V~~v~~~~~g~~V~l~~~~~G~v~~selsd~~~~~---------p~~~~~~G~~v~~~Vl~vd~~~~~~~~i~L 1331 (1924)
.|+.|+|.+|.++=.++||++|.+..||+|+.|+...+... ..+.+++|+.|-|.|..-... ++-..|
T Consensus 2 NIY~G~V~~V~pgl~AAFVDiG~~k~gFL~~~di~~~~~~~~~~~~~~~~i~~~l~~G~~ilVQV~Ke~~~---~KGprl 78 (87)
T d1smxa_ 2 NIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERG---NKGAAL 78 (87)
T ss_dssp CCEEEEEEEEEGGGTEEEEESSSSSCEEEEGGGSCGGGCSSCCCSSSCCCGGGTCCTTCEEEEEEEECCBT---TBCCEE
T ss_pred CcEEEEEEEecCCceEEEEEeCCCccceeEecccceeeeccccccccccchhhhccCCCeEEEEEeecccC---CCCceE
Confidence 47899999999986799999999999999999988765432 124578999999998875443 344556
Q ss_pred eeecc
Q 000176 1332 SLRSS 1336 (1924)
Q Consensus 1332 Slr~~ 1336 (1924)
|..-+
T Consensus 79 T~~Is 83 (87)
T d1smxa_ 79 TTFIS 83 (87)
T ss_dssp ESCCC
T ss_pred EEEEE
Confidence 65443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.93 E-value=0.029 Score=54.13 Aligned_cols=72 Identities=13% Similarity=0.062 Sum_probs=62.6
Q ss_pred CChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1815 HKHIKFISQTAILEFKNG---VADRGRSMFEGILSEYPKR-TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1815 ~~~~~~~~~~A~le~~~g---~~e~Ar~lfe~aL~~~Pk~-~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
..+++....||..+.+.. +..+|..+|+.+++..|.+ .+.|+.++..+.+.|++++|+..|+++|. +.|.+.
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~ 107 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 107 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcH
Confidence 345689999999988665 5679999999999999865 58999999999999999999999999999 677665
|
| >d1smxa_ b.40.4.5 (A:) S1-domain of Ribonuclease E {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: S1-domain of Ribonuclease E species: Escherichia coli [TaxId: 562]
Probab=95.26 E-value=0.02 Score=51.80 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=53.2
Q ss_pred CEEEEEEEEEee--ceEEEEeCCCcEEEEECccCCCcccC---------CCCccCCCCcEEEEEEEEEeCCCCEEEEEee
Q 000176 1369 MIVQGYVKNVTS--KGCFIMLSRKLDAKVLLSNLSDGYVE---------SPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1437 (1924)
Q Consensus 1369 ~~v~G~V~~v~~--~G~fV~l~~~v~g~v~~selsd~~~~---------~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk 1437 (1924)
.++.|+|.+|.+ .++||++|.+-.||+|++|+...+.. ...+.+++||.|-+.|..=-..++--.||..
T Consensus 2 NIY~G~V~~V~pgl~AAFVDiG~~k~gFL~~~di~~~~~~~~~~~~~~~~i~~~l~~G~~ilVQV~Ke~~~~KGprlT~~ 81 (87)
T d1smxa_ 2 NIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 81 (87)
T ss_dssp CCEEEEEEEEEGGGTEEEEESSSSSCEEEEGGGSCGGGCSSCCCSSSCCCGGGTCCTTCEEEEEEEECCBTTBCCEEESC
T ss_pred CcEEEEEEEecCCceEEEEEeCCCccceeEecccceeeeccccccccccchhhhccCCCeEEEEEeecccCCCCceEEEE
Confidence 468999999987 59999999999999999999876532 2345788999999998764444444455443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.99 E-value=0.26 Score=48.11 Aligned_cols=78 Identities=8% Similarity=-0.083 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCH
Q 000176 1797 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK----NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR----LGDV 1868 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~----~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k----~gd~ 1868 (1924)
+.++|...|+++.+.. ++..+..+|.+++. ..++++|..+|+++... .+.+....++.++.. ..|.
T Consensus 38 ~~~~a~~~~~~aa~~g----~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~ 111 (133)
T d1klxa_ 38 NKQKLFQYLSKACELN----SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNE 111 (133)
T ss_dssp CHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHhhhhccc----chhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCH
Confidence 4455555555554331 23444455554442 22455555555555443 233444444444443 2355
Q ss_pred HHHHHHHHHHHh
Q 000176 1869 DLIRGLFERAIS 1880 (1924)
Q Consensus 1869 ~~ar~lferal~ 1880 (1924)
++|..+|++|..
T Consensus 112 ~~A~~~~~~Aa~ 123 (133)
T d1klxa_ 112 KQAVKTFEKACR 123 (133)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555555
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.13 E-value=0.45 Score=46.25 Aligned_cols=79 Identities=8% Similarity=-0.169 Sum_probs=45.0
Q ss_pred CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH----cCC
Q 000176 1763 EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-----QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK----NGV 1833 (1924)
Q Consensus 1763 gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-----~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~----~g~ 1833 (1924)
.++++|...|+++... .++...+.++.++... ++++|..+|+++.+.. ++.....+|.+++. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g----~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN----DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC----cchHHHHHHHHHHcCCccCCC
Confidence 3455555566555543 3555556666655542 5666666666666542 24556666666554 235
Q ss_pred HHHHHHHHHHHHHh
Q 000176 1834 ADRGRSMFEGILSE 1847 (1924)
Q Consensus 1834 ~e~Ar~lfe~aL~~ 1847 (1924)
+++|..+|+++...
T Consensus 111 ~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 111 EKQAVKTFEKACRL 124 (133)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC
Confidence 66677776666543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.19 E-value=13 Score=41.61 Aligned_cols=180 Identities=8% Similarity=0.021 Sum_probs=110.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000176 1678 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1757 (1924)
Q Consensus 1678 W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~ 1757 (1924)
|-+.+..+.+.+++..|.+++.++- . ..+|..+......... ..+..+....+ .....--.....
T Consensus 43 ~~rl~~~~v~l~~~~~avd~~~k~~----~------~~~~k~~~~~l~~~~e---~~la~i~~~~~--~~~~d~l~~~v~ 107 (336)
T d1b89a_ 43 FGRLASTLVHLGEYQAAVDGARKAN----S------TRTWKEVCFACVDGKE---FRLAQMCGLHI--VVHADELEELIN 107 (336)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHT----C------HHHHHHHHHHHHHTTC---HHHHHHTTTTT--TTCHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHcC----C------HHHHHHHHHHHHhCcH---HHHHHHHHHHh--hcCHHHHHHHHH
Confidence 6667777788888888877766552 1 2489888887666552 22222211111 112233356778
Q ss_pred HHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCHHHHHHHHHHH---------HHhCCCCChHHHHHHHHHHH
Q 000176 1758 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRA---------LLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1758 i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~~~~~A~~l~~ra---------l~~~p~~~~~~~~~~~A~le 1828 (1924)
.|+..|.++....+++.++...+....++..++..+.+.+.++-.+.+.+. +..+... .+|.....++
T Consensus 108 ~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~~kl~e~l~~~s~~y~~~k~~~~c~~~---~l~~elv~Ly 184 (336)
T d1b89a_ 108 YYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQA---HLWAELVFLY 184 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTT---TCHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhChHHHHHHHHhccccCCHHHHHHHHHHc---CChHHHHHHH
Confidence 888999999999999988876677888888888866655555555555442 2222122 4677888888
Q ss_pred HHcCCHHHHHHHHHHH-------------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000176 1829 FKNGVADRGRSMFEGI-------------LSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1877 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~a-------------L~~~Pk~~dlw~~y~~le~k~gd~~~ar~lfer 1877 (1924)
.++|++++|..++-.- +.. ..+.++|..-+.++... +++-...++.-
T Consensus 185 ~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k-~~N~e~~~~~i~~yL~~-~p~~i~~lL~~ 244 (336)
T d1b89a_ 185 DKYEEYDNAIITMMNHPTDAWKEGQFKDIITK-VANVELYYRAIQFYLEF-KPLLLNDLLMV 244 (336)
T ss_dssp HHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHH-CSSTHHHHHHHHHHHHH-CGGGHHHHHHH
T ss_pred HhcCCHHHHHHHHHHcchhhhhHHHHHHHHHc-cCChHHHHHHHHHHHHc-CHHHHHHHHHH
Confidence 8999998776543331 111 23456777777777653 24444444443
|
| >d1k3ra1 b.40.4.10 (A:93-163) Hypothetical protein MTH1 (MT0001), insert domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Hypothetical protein MTH1 (MT0001), insert domain domain: Hypothetical protein MTH1 (MT0001), insert domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=81.60 E-value=1.8 Score=35.99 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=39.9
Q ss_pred cCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEE
Q 000176 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1425 (1924)
Q Consensus 1364 ~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~v 1425 (1924)
..++|++=.|++.+....|+||++|-+--++ . +..|.+|+.++++|.++
T Consensus 7 ~p~vGEiReG~~~rr~~~g~~vDiGlD~la~--~-----------k~~~~~~~r~tfrIvs~ 55 (71)
T d1k3ra1 7 KPVTGEYRQGLTVKRVKKGTLVDIGADKLAL--C-----------REKLTVNRIMSFRVVRL 55 (71)
T ss_dssp SCCTTCEEEEEEEEECSSSEEEESSSSCEEE--C-----------SSCCCSSCEEEEEEEEC
T ss_pred CCcccceeeEEEEEecCCcEEEEecCCceee--e-----------ecccccCcEEEEEEEEc
Confidence 4789999999999999999999997443333 2 23578999999999987
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.20 E-value=8 Score=43.34 Aligned_cols=145 Identities=12% Similarity=0.016 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 000176 1752 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1830 (1924)
Q Consensus 1752 ~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~ 1830 (1924)
|-.++..|.+.++++.|.+.+.++ .+..+|..+...+++. +..-|.- + ..+...+..-.......+..
T Consensus 43 ~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~la~i-----~-~~~~~~~~d~l~~~v~~ye~ 111 (336)
T d1b89a_ 43 FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQM-----C-GLHIVVHADELEELINYYQD 111 (336)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHH-----T-TTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHHHHHH-----H-HHHhhcCHHHHHHHHHHHHH
Confidence 444555666667777766655443 3677888888877776 4443311 1 11122233444555566667
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHH------HHHHHHHHHHHHcCC
Q 000176 1831 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMK------FLFKKYLEYEKSVGE 1904 (1924)
Q Consensus 1831 ~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k------~lw~~yl~~E~~~G~ 1904 (1924)
.|.++....+|+.++...+....+...|+.++.+.+ .++..+.+.+.-. ...+.++. .+|...+-+..+.|+
T Consensus 112 ~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~-~y~~~k~~~~c~~~~l~~elv~Ly~~~~~ 189 (336)
T d1b89a_ 112 RGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWS-RVNIPKVLRAAEQAHLWAELVFLYDKYEE 189 (336)
T ss_dssp TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHST-TSCHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred cCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhccc-cCCHHHHHHHHHHcCChHHHHHHHHhcCC
Confidence 788888888888877666667777777777766543 3444443333211 12222221 235565556666666
Q ss_pred HHHHH
Q 000176 1905 EERIE 1909 (1924)
Q Consensus 1905 ~~~~~ 1909 (1924)
.++|.
T Consensus 190 ~~~A~ 194 (336)
T d1b89a_ 190 YDNAI 194 (336)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
|