Citrus Sinensis ID: 000237

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630------1640------1650------1660------1670------1680------1690------1700------1710------1720------1730------1740------1750------1760------1770------1780------1790------1800------

MAQQSSRLNRLLTLLDTGSTQATRFTAARQIGEIAKTHPQDLNSLLRKVSQYLRSKSWDTRVAAAHAIGAIAQNVKLTTLKELFSCVETKMSEVGISGIVEDMVAWPNFHSKIVASVSFTSFDLNKVLEFGALLASGGQEYDIAIDNSKNPRERLARQKQNLKRRLGLDVCEQFVDLNDMIKDEDLIVHKLNSHGNGFDRRFYTSASAHNIQRLVSSMVPSVISKRPSARELNMLKRKAKISSKDQSKSWSEDGDMEVPHAQNVTTPKGSCGDPFNSNKADAVLDEDSSEHEGDGLWPFRSFVEQLILDMFDPVWEVRHGSVMALREILTHHGASAGVFMPELGPDGALNVEFKDKDSITMKREREIDLNVQVPADEPEPLLKKMKFEDAPPPLMDTMVSPVNCDGCNISIKVDDSGCNLPAGSVNGQLDLSSVKVEPESNLDGLSHPSKEAIDILEPRGQSGEKGDFLNSETLKNLPENSELMNWLKLARHSWQKNCEFLQDCAIRFLCILSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPSLVYETLYILLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLHGLLGYVLPACRAGLEDPDDDVRAVAADALIPTAAAIVALDGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQANPYMLSMLAPRLWPFMRHSITSVRHSAIRTLERLLEAGYKRMIAESSGGSFWPSFILGDTLRIVFQNLLLESNEEILQCSDRVWRLLVQSPVEDLEAAGGKFMSSWIELATTPFGSSLDATKMFWPVALPRKSHFKAAAKMRAVKLENDSSGSVDLPQERNGDTSTNSVKITVGSDLEMSVTNTRVVTASALGIFASKLHEGSIQFVIDPLWNALTSFSGVQRQVAAMVFISWFKEIKSEELPGSAAVLPNLPGHLKQWLLDLLACSDPTYPTKDSLLPYAELSRTYGKMRNEASQLLRAMETSSMFTEMLSANEIDVESLSADNAISFASKLQLLGSNSDGSESLSRQMLDDIESIKQRMLTTSGYLKCVQSNLHVTVSALVAAAVVWMSELPARLNPIILPLMASIKREQEEKLQEKAAEALAELIADCIARKPSPNDKLIKNICSLTSMDPCETPQAAAMGSMEIIDDQDFLSFGSSTGKQKSRAHMLAGGEDRSRVEGFISRRGSELALRHLCGKFGVSLFDKLPKLWDCLTEVLIPDGPSNKKKIILAIESVRDPQILINNIQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSMAKSMTINVMAAVVENAIPMLGDMTSVHARQGAGMLISLLVQGLGAELVPYAPLLVVPLLRCMSDCDQSVRQSVTRSFASLVPLLPLARGVSPPTGLTEGLSRNAEDAQFLEQLLDNSHIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDIISELHKASSLSQISCSSGDNG

cccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHccHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHcccccccEEEEEEEEHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHccccccccHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccHHHHHcHHHHHHHHHHHcccccccccccHHHHHHccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHcccccccccEEEEEccccHHHHHHHHHHHccccccEEEEEEccHHHHHHHHHHcccccEEEEcHHHHHHHHHHHccccccEEEEccccccccccHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHcccccccHHHHHHHHccHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHcccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHcHHHHHHcccEEEEEccccccccccc

cccHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHccccccccHHHHHHcccEEccccccccccccccccHHHHHHHHHHHHHHHccccccHHHcccHHcccHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccEcccccccccHHHHcHHcccccccccccccccccccccccccHHHcccccccccHHHHHHccccccccccccccccccccccccccccccccccccEEcccccccccccccHHcccccccccccccccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHcHHccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcEccccccccccccccccccccccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEcccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccccccccccccccccccccEccccccccccccccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccHccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEHHccccccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccEcHHHHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHHHccccccccccccEEEccccccHHHHHHHHHHcccccccEEEEEccHHHHHHHHHHHccccEEEEEHHHHHHHHHHHHccccEEEEEccccEEcccHHHHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEHEEEEcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccccccccHHHHHHHHHHHHHcccccHEcccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcc

MAQQSSRLNRLLTLLdtgstqatRFTAARQIGEIAKTHPQDLNSLLRKVSQYLRSKSWDTRVAAAHAIGAIAQNVKLTTLKELFSCVETKMSEVGISGIVEDMVAWPNFHSKIVASVSFTSFDLNKVLEFGALlasggqeydiaidnsknpRERLARQKQNLKrrlgldvcEQFVDlndmikdeDLIVHKLNshgngfdrrfytsASAHNIQRLVSsmvpsviskrpsaRELNMLKRKAKisskdqskswsedgdmevphaqnvttpkgscgdpfnsnkadavldedssehegdglwpfRSFVEQLILDmfdpvwevrHGSVMALREILThhgasagvfmpelgpdgalnvefkdkdsitmkREREidlnvqvpadepepllkkmkfedappplmdtmvspvncdgcnisikvddsgcnlpagsvngqldlssvkvepesnldglshpskeaidileprgqsgekgdflnsetlknlpenseLMNWLKLARHSWQKNCEFLQDCAIRFLCILSLdrfgdyvsdqVVAPVRETCAQALGAAFKYMHPSLVYETLYILLQMQrrpeweirhgSLLGIKYLVAVRQEMLHGLLGYVlpacragledpdddVRAVAADALIPTAAAIVALDGQTLHSIVMLLWDILldlddlspstSSVMNLLAEIYsqeemipkmvgatskqefdlnevvraddvgegrdfqanpymlsmlaprlwpfmrhsiTSVRHSAIRTLERLLEAGYKRMIaessggsfwpsfilgDTLRIVFQNLLLESNEEILQCSDRVWRLLVQSPVEDLEAAGGKFMSSWIElattpfgssldatkmfwpvalprksHFKAAAKMRAVKLendssgsvdlpqerngdtstnsvkITVGSDLEMSVTNTRVVTASALGIFASKLHEGSIQFVIDPLWNALTSFSGVQRQVAAMVFISWFKEikseelpgsaavlpnlpghLKQWLLDLLacsdptyptkdsllpyaELSRTYGKMRNEASQLLRAMETSSMFTEMLSANEIDVESLSADNAISFASKLQllgsnsdgsesLSRQMLDDIESIKQRMLTTSGYLKCVQSNLHVTVSALVAAAVVWMSelparlnpiILPLMASIKREQEEKLQEKAAEALAELIADCiarkpspndkliknicsltsmdpcetpqaaamgsmeiiddqdflsfgsstgkqksrahmlaggedrsrvEGFISRRGSELALRHLCGKFGVSLFDKLPKLWDCLTevlipdgpsnkKKIILAIEsvrdpqilinNIQLVRSIAPMLDealkpklltllpcifkcvchshVSVRLAASRCITSMAKSMTINVMAAVVENAipmlgdmtsvhARQGAGMLISLLVQGlgaelvpyapllvvpllrcmsdcdqsvRQSVTRSFAslvpllplargvspptglteglsrnaEDAQFLEQLLdnshiddyklgTELKVTLRRYQQEGINWLAFLKRFKLHGilcddmglgktlqASAIVASDIAerrasnsieeihpsliicpstlvghWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNycildeghiiknsKSKITVAVKQLKAAHRLILsgtpiqnnITDLWSLfdflmpgflgteRQFQAtygkplvaardskcsakDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEkfsgsqakQEISSMVkvdesadkgegnnvsaKASTHVFQALQYLLKLCshpllvlgdkspesllchlselfpgssdIISELHkasslsqiscssgdng

MAQQSSRLNRLLTlldtgstqaTRFTAARQIGEiakthpqdlnsLLRKVSQYLRSKSWDTRVAAAHAIGaiaqnvklTTLKELFSCVETKMSEVGISGIVEDMVAWPNFHSKIVASVSFTSFDLNKVLEFGALLASGGQEydiaidnsknprERLARQKqnlkrrlgldvCEQFVDLNDMIKDEDLIVHKLNSHGNGFDRRFYTSASAHNIQRlvssmvpsviskrpsarelnmlkrkakisskdqskswsedgdMEVPHAQNvttpkgscgdpFNSNKADAVLDEDSSEHEGDGLWPFRSFVEQLILDMFDPVWEVRHGSVMALREILTHHGASAGVFMPELGPDGALNVEFKDKDSITMKrereidlnvqvpadepepllKKMKFEDAPPPLMDTMVSPVNCDGCNISIKVDDSGCNLPAGSVNGQLDLSSVKVEPesnldglshpsKEAIDILEPRGQSGEKGDFLNSETLKNLPENSELMNWLKLARHSWQKNCEFLQDCAIRFLCILSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPSLVYETLYILLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLHGLLGYVLPACRAGLEDPDDDVRAVAADALIPTAAAIVALDGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEEMIPKMVGatskqefdlNEVVRADDVGEGRDFQANPYMLSMLAPRLWPFMRHSITSVRHSAIRTLERLLEAGYKRMIAESSGGSFWPSFILGDTLRIVFQNLLLESNEEILQCSDRVWRLLVQSPVEDLEAAGGKFMSSWIELATTPFGSSLDATKMFWPVALPRKSHFKAAAKMRAVKlendssgsvdlpqerngdtstnsvkitvgsdlemsvTNTRVVTASALGIFASKLHEGSIQFVIDPLWNALTSFSGVQRQVAAMVFISWFKEIKSEELPGSAAVLPNLPGHLKQWLLDLLACSDPTYPTKDSLLPYAELSRTYGKMRNEASQLLRAMETSSMFTEMLSANEIDVESLSADNAISFASKLQLLGSNSDGSESLSRQMLDDIESIKQRMLTTSGYLKCVQSNLHVTVSALVAAAVVWMSELPARLNPIILPLMASIKREQEEKLQEKAAEALAELIADciarkpspndkLIKNICSLTSMDPCETPQAAAMGSMEIIDDQDFLSFGSSTGKQKSRahmlaggedrsrvEGFISRRGSELALRHLCGKFGVSLFDKLPKLWDCLTEvlipdgpsnkKKIILAIesvrdpqilINNIQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSMAKSMTINVMAAVVENAIPMLGDMTSVHARQGAGMLISLLVQGLGAELVPYAPLLVVPLLRCMSDCDQSVRQSVTRSfaslvpllplargvsPPTGLTEGLSRNAEDAQFLEQLLDNSHIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKfsgsqakqeisSMVKVDESADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDIISELhkasslsqiscssgdng

MAQQSSRLNRLLTLLDTGSTQATRFTAARQIGEIAKTHPQDLNSLLRKVSQYLRSKSWDTRVaaahaigaiaQNVKLTTLKELFSCVETKMSEVGISGIVEDMVAWPNFHSKIVASVSFTSFDLNKVLEFGALLASGGQEYDIAIDNSKNPRERLARQKQNLKRRLGLDVCEQFVDLNDMIKDEDLIVHKLNSHGNGFDRRFYTSASAHNIQRLVSSMVPSVISKRPSARELNMLKRKAKISSKDQSKSWSEDGDMEVPHAQNVTTPKGSCGDPFNSNKADAVLDEDSSEHEGDGLWPFRSFVEQLILDMFDPVWEVRHGSVMALREILTHHGASAGVFMPELGPDGALNVEFKDKDSITMKREREIDLNVQVPADEPEPLLKKMKFEDAPPPLMDTMVSPVNCDGCNISIKVDDSGCNLPAGSVNGQLDLSSVKVEPESNLDGLSHPSKEAIDILEPRGQSGEKGDFLNSETLKNLPENSELMNWLKLARHSWQKNCEFLQDCAIRFLCILSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPSLVYETLYILLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLHGLLGYVLPACRAGLEDPdddvravaadaliptaaaivalDGQTLHSIVMllwdilldlddlSPSTSSVMNLLAEIYSQEEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQANPYMLSMLAPRLWPFMRHSITSVRHSAIRTLERLLEAGYKRMIAESSGGSFWPSFILGDTLRIVFQNLLLESNEEILQCSDRVWRLLVQSPVEDLEAAGGKFMSSWIELATTPFGSSLDATKMFWPVALPRKSHFKAAAKMRAVKLENDSSGSVDLPQERNGDTSTNSVKITVGSDLEMSVTNTRVVTASALGIFASKLHEGSIQFVIDPLWNALTSFSGVQRQVAAMVFISWFKEIKSEELPGSAAVLPNLPGHLKQWLLDLLACSDPTYPTKDSLLPYAELSRTYGKMRNEASQLLRAMETSSMFTEMLSANEIDVESLSADNAISFASKLQLLGSNSDGSESLSRQMLDDIESIKQRMLTTSGYLKCVQSNLHvtvsalvaaavvWMSELPARLNPIILPLMASIKReqeeklqekaaealaelIADCIARKPSPNDKLIKNICSLTSMDPCETPQAAAMGSMEIIDDQDFLSFGSSTGKQKSRAHMLAGGEDRSRVEGFISRRGSELALRHLCGKFGVSLFDKLPKLWDCLTEVLIPDGPSNKKKIILAIESVRDPQILINNIQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSMAKSMTINVMAAVVENAIPMLGDMTSVHARQGAGMLISLLVQGLGAElvpyapllvvpllRCMSDCDQSVRQSVTRSFASLVPLLPLARGVSPPTGLTEGLSRNAEDAQFLEQLLDNSHIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDIISELHKASSLSQISCSSGDNG

**********LLTLLDTG*TQATRFTAARQIGEIAKTHPQDLNSLLRKVSQYLRSKSWDTRVAAAHAIGAIAQNVKLTTLKELFSCVETKMSEVGISGIVEDMVAWPNFHSKIVASVSFTSFDLNKVLEFGALLASGGQEYDIAI*****************KRRLGLDVCEQFVDLNDMIKDEDLIVHKLNSHGNGFDRRFYTSASAHNIQRLV*******************************************************************************GLWPFRSFVEQLILDMFDPVWEVRHGSVMALREILTHHGASAGVFMPELGPDGALNV**********************************************MVSPVNCDGCNISIKVDDSGCNL*************************************************************ELMNWLKLARHSWQKNCEFLQDCAIRFLCILSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPSLVYETLYILLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLHGLLGYVLPACRAGLEDPDDDVRAVAADALIPTAAAIVALDGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEEMIPKMVGA****EFDLNEVVRADDVGEGRDFQANPYMLSMLAPRLWPFMRHSITSVRHSAIRTLERLLEAGYKRMIAESSGGSFWPSFILGDTLRIVFQNLLLESNEEILQCSDRVWRLLVQSPVEDLEAAGGKFMSSWIELATTPFGSSLDATKMFWPVALPRKSHF************************************TVGSDLEMSVTNTRVVTASALGIFASKLHEGSIQFVIDPLWNALTSFSGVQRQVAAMVFISWFKEIKSEELPGSAAVLPNLPGHLKQWLLDLLACSDPTYPTKDSLLPYAELS************************************************************************IKQRMLTTSGYLKCVQSNLHVTVSALVAAAVVWMSELPARLNPIILPLMASI**************ALAELIADCIAR******KLIKNICSLT****************************************************FISRRGSELALRHLCGKFGVSLFDKLPKLWDCLTEVLIPDGPSNKKKIILAIESVRDPQILINNIQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSMAKSMTINVMAAVVENAIPMLGDMTSVHARQGAGMLISLLVQGLGAELVPYAPLLVVPLLRCMSDCDQSVRQSVTRSFASLVPLLPLARGV****************AQFLEQLLDNSHIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKF********************************THVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPG*************************

*****SR**RLLTLLDTGSTQATRFTAARQIGEIAKTHPQDLNSLLRKVSQYLRSKSWDTRVAAAHAIGAIAQNVKLTTLK**********************************SVSFTSFDLNKVLEFGALLASGGQEY************************LGLDVCEQFVDLNDMIKD****************************************************************************************************************LWPFRSFVEQLILDMFDPVWEVRHGSVMALR***********************************************************************************************************VKVEPESNLDGLSHPSKEAIDILEPRGQSGEKGDFLNSETLKNLPE**************WQKNCEFLQDCAIRFLCILSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPSLVYETLYILLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLHGLLGYVLPACRAGLEDPDDDVRAVAADALIPTAAAIVALDGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQANPYMLSMLAPRLWPFMRHSITSVRHSAIRTLERLLEAGYK*********SFWPSFILGDTLRIVFQNLLLESNEEILQCSDRVWRLLVQSPVEDLEAAGGKFMSSWIELATTPFGSSLDATKMFW******************************************SVKITVGSDLEMSVTNTRVVTASALGIFASKLHEGSIQFVIDPLWNALTSFSGVQRQVAAMVFISWFKEIKS***********NLPGHLKQWLLDLLACSDPTYPTKDSLLPYAELSRTYGKMRNEASQLLRAMETSSMFTEML*******ESLSADNAISFASKLQLLGSNS***************SIKQRMLTTSGYLKCVQSNLHVTVSALVAAAVVWMSELPARLNPIILPLMASIKREQEEKLQEKAAEALAELIADCIARKPSPNDKLIKNICSLTSMDPCETPQAAA*****************************************ISRRGSELALRHLCGKFGVSLFDKLPKLWDCLTEVLIPD************ESVRDPQILINNIQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSMAKSMTINVMAAVVENAIPMLGDMTSVHARQGAGMLISLLVQGLGAELVPYAPLLVVPLLRCMSDCDQSVRQSVTRSFASLVPLLPLARGVSPPTGLTEGLSRNAEDAQFLEQLLDN*HIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASD**************PSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIA*REQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVA*************GVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQE*************************HVFQALQYLLKLCSHPLLVLGD********HL**LFPGSSDIISELHKASSLSQISCSSGDN*

MAQQSSRLNRLLTLLDTGSTQATRFTAARQIGEIAKTHPQDLNSLLRKVSQYLRSKSWDTRVAAAHAIGAIAQNVKLTTLKELFSCVETKMSEVGISGIVEDMVAWPNFHSKIVASVSFTSFDLNKVLEFGALLASGGQEYDIAIDNSKNPRERLARQKQNLKRRLGLDVCEQFVDLNDMIKDEDLIVHKLNSHGNGFDRRFYTSASAHNIQRLVSSMVPSVISKRPSARELNMLK*******************MEVPHAQNVTTPKGSCGDPFNSNKADA***********DGLWPFRSFVEQLILDMFDPVWEVRHGSVMALREILTHHGASAGVFMPELGPDGALNVEFKDKDSITMKREREIDLNVQVPADEPEPLLKKMKFEDAPPPLMDTMVSPVNCDGCNISIKVDDSGCNLPAGSVNGQLDLSSVKVEPESNLDGLSHPSKEAIDILEPRGQSGEKGDFLNSETLKNLPENSELMNWLKLARHSWQKNCEFLQDCAIRFLCILSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPSLVYETLYILLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLHGLLGYVLPACRAGLEDPDDDVRAVAADALIPTAAAIVALDGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQANPYMLSMLAPRLWPFMRHSITSVRHSAIRTLERLLEAGYKRMIAESSGGSFWPSFILGDTLRIVFQNLLLESNEEILQCSDRVWRLLVQSPVEDLEAAGGKFMSSWIELATTPFGSSLDATKMFWPVALPRKSHFKAAAKMRAVKLENDSSGSVDLPQERNGDTSTNSVKITVGSDLEMSVTNTRVVTASALGIFASKLHEGSIQFVIDPLWNALTSFSGVQRQVAAMVFISWFKEIKSEELPGSAAVLPNLPGHLKQWLLDLLACSDPTYPTKDSLLPYAELSRTYGKMRNEASQLLRAMETSSMFTEMLSANEIDVESLSADNAISFASKLQLLGS*********RQMLDDIESIKQRMLTTSGYLKCVQSNLHVTVSALVAAAVVWMSELPARLNPIILPLMASIKRE*********AEALAELIADCIARKPSPNDKLIKNICSLTSMDPCETPQAAAMGSMEIIDDQDFLSFG******************RSRVEGFISRRGSELALRHLCGKFGVSLFDKLPKLWDCLTEVLIPDGPSNKKKIILAIESVRDPQILINNIQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSMAKSMTINVMAAVVENAIPMLGDMTSVHARQGAGMLISLLVQGLGAELVPYAPLLVVPLLRCMSDCDQSVRQSVTRSFASLVPLLPLARGVSPPTGLTEGLSRNAEDAQFLEQLLDNSHIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKF**************************VSAKASTHVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDIISELH****************

*****SRLNRLLTLLDTGSTQATRFTAARQIGEIAKTHPQDLNSLLRKVSQYLRSKSWDTRVAAAHAIGAIAQNVKLTTLKELF*******************************SVSFTSFDLNKVLEFGALLASGGQEYDIAIDNSKNPRERLARQKQNLKRRLGLDVCEQFVDLNDMIKDEDL***********************************************************************************************************DGLWPFRSFVEQLILDMFDPVWEVRHGSVMALREILTHHGASAGVFMPELGPDGA*NVEF*************IDLNVQVPADEPEPLLKK*********************************CNLP****NGQLDLSSVKVEPESNLDGLSHPSKEAIDILEPRGQSGEKGDFLNSETLKNLPENSELMNWLKLARHSWQKNCEFLQDCAIRFLCILSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPSLVYETLYILLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLHGLLGYVLPACRAGLEDPDDDVRAVAADALIPTAAAIVALDGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQANPYMLSMLAPRLWPFMRHSITSVRHSAIRTLERLLEAGYK********GSFWPSFILGDTLRIVFQNLLLESNEEILQCSDRVWRLLVQSPVEDLEAAGGKFMSSWIELATTPFGSSLDATKMFWPVALP********************************DTSTNSVKITVGSDLEMSVTNTRVVTASALGIFASKLHEGSIQFVIDPLWNALTSFSGVQRQVAAMVFISWFKEIKSEELPGSAAVLPNLPGHLKQWLLDLLACSDPTYPTKDSLLPYAELSRTYGKMRNEASQLLRAMETSSMFTEMLSANEIDVESLSADNAISFASKLQLLGSNSDGSESLSRQMLDDIESIKQRMLTTSGYLKCVQSNLHVTVSALVAAAVVWMSELPARLNPIILPLMASIKREQEEKLQEKAAEALAELIADCIARKPSPNDKLIKNICSLTSMDPCETPQAAAM*********************************RSRVEGFISRRGSELALRHLCGKFGVSLFDKLPKLWDCLTEVLIPDGPSNKKKIILAIESVRDPQILINNIQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSMAKSMTINVMAAVVENAIPMLGDMTSVHARQGAGMLISLLVQGLGAELVPYAPLLVVPLLRCMSDCDQSVRQSVTRSFASLVPLLPLARGVSPPTGLTEGLSRNAEDAQFLEQLLDNSHIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARD*KCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEIS**V****************KASTHVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDIISELHKASSLSQISCSSGDNG

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

MAQQSSRLNRLLTLLDTGSTQATRFTAARQIGEIAKTHPQDLNSLLRKVSQYLRSKSWDTRVAAAHAIGAIAQNVKLTTLKELFSCVETKMSEVGISGIVEDMVAWPNFHSKIVASVSFTSFDLNKVLEFGALLASGGQEYDIAIDNSKNPRERLARQKQNLKRRLGLDVCEQFVDLNDMIKDEDLIVHKLNSHGNGFDRRFYTSASAHNIQRLVSSMVPSVISKRPSARELNMLKRKAKISSKDQSKSWSEDGDMEVPHAQNVTTPKGSCGDPFNSNKADAVLDEDSSEHEGDGLWPFRSFVEQLILDMFDPVWEVRHGSVMALREILTHHGASAGVFMPELGPDGALNVEFKDKDSITMKREREIDLNVQVPADEPEPLLKKMKFEDAPPPLMDTMVSPVNCDGCNISIKVDDSGCNLPAGSVNGQLDLSSVKVEPESNLDGLSHPSKEAIDILEPRGQSGEKGDFLNSETLKNLPENSELMNWLKLARHSWQKNCEFLQDCAIRFLCILSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPSLVYETLYILLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLHGLLGYVLPACRAGLEDPDDDVRAVAADALIPTAAAIVALDGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQANPYMLSMLAPRLWPFMRHSITSVRHSAIRTLERLLEAGYKRMIAESSGGSFWPSFILGDTLRIVFQNLLLESNEEILQCSDRVWRLLVQSPVEDLEAAGGKFMSSWIELATTPFGSSLDATKMFWPVALPRKSHFKAAAKMRAVKLENDSSGSVDLPQERNGDTSTNSVKITVGSDLEMSVTNTRVVTASALGIFASKLHEGSIQFVIDPLWNALTSFSGVQRQVAAMVFISWFKEIKSEELPGSAAVLPNLPGHLKQWLLDLLACSDPTYPTKDSLLPYAELSRTYGKMRNEASQLLRAMETSSMFTEMLSANEIDVESLSADNAISFASKLQLLGSNSDGSESLSRQMLDDIESIKQRMLTTSGYLKCVQSNLHVTVSALVAAAVVWMSELPARLNPIILPLMxxxxxxxxxxxxxxxxxxxxxxxxxCIARKPSPNDKLIKNICSLTSMDPCETPQAAAMGSMEIIDDQDFLSFGSSTGKQKSRAHMLAGGEDRSRVEGFISRRGSELALRHLCGKFGVSLFDKLPKLWDCLTEVLIPDGPSNKKKIILAIESVRDPQILINNIQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSMAKSMTINVMAAVVENAIPMLGDMTSVHARQGAGMLISLLVQGLGAELVPYAPLLVVPLLRCMSDCDQSVRQSVTRSFASLVPLLPLARGVSPPTGLTEGLSRNAEDAQFLEQLLDNSHIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDIISELHKASSLSQISCSSGDNG

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1806	2.2.26 [Sep-21-2011]
O14981		1849	TATA-binding protein-asso	yes	no	0.658	0.643	0.379	0.0
O43065		1953	Probable helicase mot1 OS	yes	no	0.666	0.615	0.350	0.0
P32333		1867	TATA-binding protein-asso	yes	no	0.662	0.641	0.340	0.0
Q03468		1493	DNA excision repair prote	no	no	0.177	0.214	0.334	5e-46
Q6FV37		1484	Putative DNA helicase INO	no	no	0.164	0.200	0.348	8e-46
Q6BKC2		1616	Helicase SWR1 OS=Debaryom	no	no	0.182	0.204	0.332	1e-44
P53115		1489	Putative DNA helicase INO	no	no	0.165	0.200	0.338	2e-44
A6ZU34		1495	Putative DNA helicase INO	N/A	no	0.165	0.199	0.338	2e-44
Q759G7		1486	Helicase SWR1 OS=Ashbya g	no	no	0.169	0.205	0.366	2e-44
Q6BGY8		1364	Putative DNA helicase INO	no	no	0.161	0.214	0.332	5e-44

>sp\|O14981\|BTAF1_HUMAN TATA-binding protein-associated factor 172 OS=Homo sapiens GN=BTAF1 PE=1 SV=2	Back alignment and function desciption

 Score =  835 bits (2156), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1345 (37%), Positives = 744/1345 (55%), Gaps = 155/1345 (11%)

Query: 495  QKNCEFLQDCAIRFLCILSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPSLVYETLY 554
            Q++ E+L+D  IR LC+ +LDRFGD+VSD+VVAPVRETCAQ LG   K+M+ + V++T+ 
Sbjct: 333  QQHQEWLEDLVIRLLCVFALDRFGDFVSDEVVAPVRETCAQTLGVVLKHMNETGVHKTVD 392

Query: 555  ILLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLHGLLGYVLPACRAGLEDPDDDVRAVAAD 614
            +LL++  + +WE+RHG LLGIKY +AVRQ++++ LL  VL     GL+D DDDVRAVAA 
Sbjct: 393  VLLKLLTQEQWEVRHGGLLGIKYALAVRQDVINTLLPKVLTRIIEGLQDLDDDVRAVAAA 452

Query: 615  ALIPTAAAIVALDGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEEMIPKMVG 674
            +L+P   ++V L  Q +  I+  LWD LL+LDDL+ ST+S+M LL+ + +     P++  
Sbjct: 453  SLVPVVESLVYLQTQKVPFIINTLWDALLELDDLTASTNSIMTLLSSLLT----YPQVQQ 508

Query: 675  ATSKQEFDLNEVVRADDVGEGRDFQANPYMLSMLAPRLWPFMRHSITSVRHSAIRTLERL 734
             + +Q                         L++L PR+WPF+ H+I+SVR +A+ TL  L
Sbjct: 509  CSIQQS------------------------LTVLVPRVWPFLHHTISSVRRAALETLFTL 544

Query: 735  LEAGYKRMIAESSGGSFWPSFILGDTLRIVFQNLLLESNEEILQCSDRVW-RLLVQSPVE 793
            L         +    S W   IL D LR +FQ  +LES++EIL    +VW  LL ++ V+
Sbjct: 545  LST-------QDQNSSSWLIPILPDMLRHIFQFCVLESSQEILDLIHKVWMELLSKASVQ 597

Query: 794  DLEAAGGKFMSSWIELATTPFGSSLDATKMFWPVALPRKSHFKAAAKMRAVKLENDSSGS 853
             + AA   +M +W+ L             M  P  LP   +     K RA   +  + G 
Sbjct: 598  YVVAAACPWMGAWLCL-------------MMQPSHLPIDLNMLLEVKARA---KEKTGGK 641

Query: 854  VDLPQERNGDTSTNSVKITVGSDLEMSVTNTRVVTASALGIFASKLHEGSIQFVIDPLWN 913
            V   Q +N +     +    G+D  M    TR        + A+KL       + DP  N
Sbjct: 642  VRQGQSQNKEVLQEYI---AGADTIMEDPATRDFVVMRARMMAAKLLGALCCCICDPGVN 698

Query: 914  ALT------------------SFSGVQRQVAAMVFISWF---KEIKSEELPGSAAVLPNL 952
             +T                  S S +QR   A+V   W    KE K+  L    AV P L
Sbjct: 699  VVTQEIKPAESLGQLLLFHLNSKSALQRISVALVICEWAALQKECKAVTL----AVQPRL 754

Query: 953  PGHLKQWLLDLLACSDPTYPTKDSLLPYAELSRTYGKMRNEASQLLRAMETSSMFTEMLS 1012
                    LD+L+            L Y E++  + +M+NE  QL+ ++  + +  E+  
Sbjct: 755  --------LDILS----------EHLYYDEIAVPFTRMQNECKQLISSL--ADVHIEV-- 792

Query: 1013 ANEIDVESLSADNAISFASKLQLLGSNSDGSESLSRQMLDDIESIKQRMLTTSGYLKCVQ 1072
             N ++   L+ D A    + +    + +  S  L+ Q+L  ++S +Q++  T        
Sbjct: 793  GNRVNNNVLTIDQASDLVTTV---FNEATSSFDLNPQVLQQLDSKRQQVQMTVTETNQEW 849

Query: 1073 SNLHVTVSALVAAAVVWMSELPARLNPIILPLMASIKREQEEKLQEKAAEALAELIADCI 1132
              L + V    A AVV + +LP +LNPII PLM +IK+E+   +Q  AA+ +A+L+  C 
Sbjct: 850  QVLQLRVHTFAACAVVSLQQLPEKLNPIIKPLMETIKKEENTLVQNYAAQCIAKLLQQCT 909

Query: 1133 ARKPSPNDKLIKNICSLTSMDPCETP--------QAAAMGSMEIIDDQDFLSF------- 1177
             R P PN K+IKN+CS   +DP  TP        Q+    S     ++D +         
Sbjct: 910  TRTPCPNSKIIKNLCSSLCVDPYLTPCVTCPVPTQSGQENSKGSTSEKDGMHHTVTKHRG 969

Query: 1178 ------------------GSSTGKQKSRAHMLAGGE--------DRSRVEGFISRRGSEL 1211
                              G +    K++   L  G         D ++    + RRG+E 
Sbjct: 970  IITLYRHQKAAFAITSRRGPTPKAVKAQIADLPAGSSGNILVELDEAQKPYLVQRRGAEF 1029

Query: 1212 ALRHLCGKFGVSLFDKLPKLWDCLTEVLIPDGPSNKKKIILAIESVRDP-QILINNIQLV 1270
            AL  +   FG  +  KLP LWD +   L      N       ++    P Q L+N++Q+ 
Sbjct: 1030 ALTTIVKHFGGEMAVKLPHLWDAMVGPLRNTIDINNFDGKSLLDKGDSPAQELVNSLQVF 1089

Query: 1271 RSIAPMLDEALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSMAKSMTINVMAAVVENA 1330
             + A  +D  L P L+  LP ++ C+ +   +VR  A+RC+  M+K  T+  M   +E  
Sbjct: 1090 ETAAASMDSELHPLLVQHLPHLYMCLQYPSTAVRHMAARCVGVMSKIATMETMNIFLEKV 1149

Query: 1331 IPMLGDMTSVHARQGAGMLISLLVQGLGAELVPYAPLLVVPLLRCMSDCDQSVRQSVTRS 1390
            +P LG +     ++GA   ++ +++ L   +VPY  LLVVP+L  MSD   SVR   T+ 
Sbjct: 1150 LPWLGAIDDSVKQEGAIEALACVMEQLDVGIVPYIVLLVVPVLGRMSDQTDSVRFMATQC 1209

Query: 1391 FASLVPLLPLARGV-SPPTGLTEGLSRNAEDAQFLEQLLDNSHIDDYKLGTELKVTLRRY 1449
            FA+L+ L+PL  G+  PP    E +   A++  FLEQLLD   +++YK+   +   LR+Y
Sbjct: 1210 FATLIRLMPLEAGIPDPPNMSAELIQLKAKERHFLEQLLDGKKLENYKIPVPINAELRKY 1269

Query: 1450 QQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAER---RASNSIEEIHP--S 1504
            QQ+G+NWLAFL ++KLHGILCDDMGLGKTLQ+  I+A D   R    A + + E  P  S
Sbjct: 1270 QQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSKLAECMPLPS 1329

Query: 1505 LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKD 1564
            L++CP TL GHW  E+ KF     ++ L Y G   +RI L+ Q  +HN+I+ SYDVVR D
Sbjct: 1330 LVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVKRHNLIVASYDVVRND 1389

Query: 1565 ADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDF 1624
             D+   + +NYCILDEGH+IKN K+K++ AVKQL A +R+ILSGTPIQNN+ +LWSLFDF
Sbjct: 1390 IDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDF 1449

Query: 1625 LMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVL 1684
            LMPGFLGTERQF A YGKP++A+RD++ S+++ EAGVLAM+ALH+QV+PFLLRR K++VL
Sbjct: 1450 LMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVL 1509

Query: 1685 SDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKASTH 1744
             DLP KIIQD YC LS +Q++LYE F+ S+AK ++   V     +++ E   +  KA+ H
Sbjct: 1510 QDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETEKPKL--KATGH 1567

Query: 1745 VFQALQYLLKLCSHPLLVLGDKSPE 1769
            VFQALQYL KLC+HP LVL  + PE
Sbjct: 1568 VFQALQYLRKLCNHPALVLTPQHPE 1592

Regulates transcription in association with TATA binding protein (TBP). Removes TBP from the TATA box in an ATP-dependent manner.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: -

>sp\|O43065\|MOT1_SCHPO Probable helicase mot1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mot1 PE=1 SV=4	Back alignment and function description

>sp\|P32333\|MOT1_YEAST TATA-binding protein-associated factor MOT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MOT1 PE=1 SV=1	Back alignment and function description

>sp\|Q03468\|ERCC6_HUMAN DNA excision repair protein ERCC-6 OS=Homo sapiens GN=ERCC6 PE=1 SV=1	Back alignment and function description

>sp\|Q6FV37\|INO80_CANGA Putative DNA helicase INO80 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=INO80 PE=3 SV=1	Back alignment and function description

>sp\|Q6BKC2\|SWR1_DEBHA Helicase SWR1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SWR1 PE=3 SV=2	Back alignment and function description

>sp\|P53115\|INO80_YEAST Putative DNA helicase INO80 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=INO80 PE=1 SV=1	Back alignment and function description

>sp\|A6ZU34\|INO80_YEAS7 Putative DNA helicase INO80 OS=Saccharomyces cerevisiae (strain YJM789) GN=INO80 PE=3 SV=1	Back alignment and function description

>sp\|Q759G7\|SWR1_ASHGO Helicase SWR1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SWR1 PE=3 SV=2	Back alignment and function description

>sp\|Q6BGY8\|INO80_DEBHA Putative DNA helicase INO80 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=INO80 PE=3 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1806
225436245		2052	PREDICTED: TATA-binding protein-associat	0.986	0.867	0.767	0.0
359489057		2060	PREDICTED: TATA-binding protein-associat	0.983	0.862	0.763	0.0
359489054		2089	PREDICTED: TATA-binding protein-associat	0.983	0.850	0.751	0.0
224126033		2045	chromatin remodeling complex subunit [Po	0.986	0.870	0.773	0.0
356543311		2047	PREDICTED: TATA-binding protein-associat	0.982	0.867	0.726	0.0
356531732		2047	PREDICTED: TATA-binding protein-associat	0.983	0.868	0.723	0.0
334185968		2045	TATA box binding protein associated fact	0.986	0.870	0.701	0.0
356531734		2064	PREDICTED: TATA-binding protein-associat	0.983	0.860	0.716	0.0
334185970		2129	TATA box binding protein associated fact	0.986	0.836	0.689	0.0
6822074		2049	TATA box binding protein (TBP) associate	0.982	0.865	0.698	0.0

>gi\|225436245\|ref\|XP_002275285.1\| PREDICTED: TATA-binding protein-associated factor 172 isoform 1 [Vitis vinifera]	Back alignment and taxonomy information

 Score = 2765 bits (7168), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1390/1810 (76%), Positives = 1556/1810 (85%), Gaps = 29/1810 (1%)

Query: 1    MAQQSSRLNRLLTLLDTGSTQATRFTAARQIGEIAKTHPQDLNSLLRKVSQYLRSKSWDT 60
            M+ QSSRL+RLLTLLDTGSTQATR TAARQIG+IAK+HPQDLNSLLRKVSQYLRSK+WDT
Sbjct: 1    MSHQSSRLHRLLTLLDTGSTQATRLTAARQIGDIAKSHPQDLNSLLRKVSQYLRSKNWDT 60

Query: 61   RVAAAHAIGAIAQNVKLTTLKELFSCVETKMSEVGISGIVEDMVAWPNFHSKIVASVSFT 120
            RVAAAHAIGAIA+NVK ++L ELF+CV  +MSE GISG VED+VAWP++H KI+A   F 
Sbjct: 61   RVAAAHAIGAIAENVKHSSLSELFACVGKRMSEAGISGEVEDVVAWPDYHPKIMAGSPFR 120

Query: 121  SFDLNKVLEFGALLASGGQEYDIAIDNSKNPRERLARQKQNLKRRLGLDVCEQFVDLNDM 180
            SFD+NKVLEFGALLASGGQEYDIA DN+KNPR+RLARQKQNL+RRLGLD+CEQF+D+NDM
Sbjct: 121  SFDINKVLEFGALLASGGQEYDIASDNTKNPRDRLARQKQNLRRRLGLDMCEQFMDVNDM 180

Query: 181  IKDEDLIVHKLNSHGNGFDRRFYTSASAHNIQRLVSSMVPSVISKRPSARELNMLKRKAK 240
            I+DEDLIVHK N  GNG D RF  S S H+IQRLV++MVP++ISKRPSARELN+LKRKAK
Sbjct: 181  IRDEDLIVHKFNPQGNGIDNRFNNSQSVHSIQRLVANMVPTIISKRPSARELNLLKRKAK 240

Query: 241  ISSKDQSKSWSEDGDMEVPHAQNVTTPKGSCGDPFNSNKA--DAVLDEDSSEHEGDGLWP 298
            I+SKDQ+K WSEDGD     A+ +TTPK SC +  +S+K   D ++DED+ +H+GDG WP
Sbjct: 241  INSKDQTKGWSEDGDT----AEVLTTPKESCPESLHSDKVFMDPIVDEDNFDHDGDGRWP 296

Query: 299  FRSFVEQLILDMFDPVWEVRHGSVMALREILTHHGASAGVFMPELGPDGALNVEFKDKD- 357
            F SFVEQL+LDMFDPVWE+RHGSVMALREILTH GASAGV MP+L    A  +E K+KD 
Sbjct: 297  FHSFVEQLLLDMFDPVWEIRHGSVMALREILTHQGASAGVLMPDLSSGAASFIELKEKDN 356

Query: 358  SITMKREREIDLNVQVPADEPEPLLKKMKFEDAPPPLMDTMVSPVNCDGCNISIKVDDSG 417
            S T+KREREIDLN+QVPADE EP LK++K ED   PLMDT+ S  N    +I I+V+DSG
Sbjct: 357  SNTLKREREIDLNMQVPADESEPNLKRLKSEDLSSPLMDTVGSAGNHANLDIRIRVEDSG 416

Query: 418  CNLPAGSVNGQLDLSSVKVEPESNLDGLSHPSKEAIDILEP-RGQSGEKGDFLNSETLKN 476
            CNLPA   NG+LD+SSVKV+PES +DG   P KE +D+    +G   +K      + LKN
Sbjct: 417  CNLPAWQANGELDVSSVKVKPESYIDGACFPCKEDVDMGGGLKGDHEDKNCIGKMDVLKN 476

Query: 477  LPENSELMNWLKLARHSWQKNCEFLQDCAIRFLCILSLDRFGDYVSDQVVAPVRETCAQA 536
            LPEN ELMN +K+ARHSW KN EFLQDCAIRFLC+LSLDRFGDYVSDQVVAPVRETCAQA
Sbjct: 477  LPENCELMNLIKVARHSWLKNSEFLQDCAIRFLCVLSLDRFGDYVSDQVVAPVRETCAQA 536

Query: 537  LGAAFKYMHPSLVYETLYILLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLHGLLGYVLPA 596
            LGA  KYMHP LV+ETL ILLQMQ RPEWEIRHGSLLGIKYLVAVRQEMLH LL +VLPA
Sbjct: 537  LGAVLKYMHPPLVHETLNILLQMQCRPEWEIRHGSLLGIKYLVAVRQEMLHNLLAHVLPA 596

Query: 597  CRAGLEDPDDDVRAVAADALIPTAAAIVALDGQTLHSIVMLLWDILLDLDDLSPSTSSVM 656
            C+ GLEDPDDDVRAVAADALIPTAA+IV+L GQTLHSIVMLLWDILLDLDDLSPSTSSVM
Sbjct: 597  CKTGLEDPDDDVRAVAADALIPTAASIVSLKGQTLHSIVMLLWDILLDLDDLSPSTSSVM 656

Query: 657  NLLAEIYSQEEMIPKMVGATS---KQEFDLNEVVRADDVGEGRDFQANPYMLSMLAPRLW 713
            NLLAEIYSQEEMIPKM GA +   KQE DLNEVV  DD+GEG + Q NPYMLS LAPRLW
Sbjct: 657  NLLAEIYSQEEMIPKMFGALASKEKQELDLNEVVCIDDLGEGINIQENPYMLSTLAPRLW 716

Query: 714  PFMRHSITSVRHSAIRTLERLLEAGYKRMIAESSGGSFWPSFILGDTLRIVFQNLLLESN 773
            PFMRHSITSVR+SAIRTLERLLEAGYK+ I+E S  SFWPSFILGDTLRIVFQNLLLESN
Sbjct: 717  PFMRHSITSVRYSAIRTLERLLEAGYKKNISEPSTSSFWPSFILGDTLRIVFQNLLLESN 776

Query: 774  EEILQCSDRVWRLLVQSPVEDLEAAGGKFMSSWIELATTPFGSSLDATKMFWPVALPRKS 833
            EEI QCS+RVWRLL+Q  V DLE A   ++SSWIELATTP+GS LD+TKMFWPVALPRKS
Sbjct: 777  EEISQCSERVWRLLLQCSVGDLEDAARSYISSWIELATTPYGSPLDSTKMFWPVALPRKS 836

Query: 834  HFKAAAKMRAVKLENDSSGSVDLP-------QERNGDTSTNSVKITVGSDLEMSVTNTRV 886
            HF+AAAKMRAVKLENDS  ++ L        QERNGD+S NSVKI VG+DLE SVT+TRV
Sbjct: 837  HFRAAAKMRAVKLENDSCRNIGLDFTKETNLQERNGDSSANSVKIIVGADLEKSVTHTRV 896

Query: 887  VTASALGIFASKLHEGSIQFVIDPLWNALTSFSGVQRQVAAMVFISWFKEIKSEELPGSA 946
            VTA+ALGIFASKLHEG IQ+VIDPLW ALTS SGVQRQV +MV ISWFKEIKS +     
Sbjct: 897  VTAAALGIFASKLHEGPIQYVIDPLWKALTSLSGVQRQVVSMVLISWFKEIKSRD----- 951

Query: 947  AVLPNLPGHLKQWLLDLLACSDPTYPTKDSLLPYAELSRTYGKMRNEASQLLRAMETSSM 1006
             ++P LP +LK WL DLLAC+DP +PTKDSL PY ELSRTY KMR EASQL RA+E+S +
Sbjct: 952  GIVPGLPSYLKNWLFDLLACTDPAFPTKDSLAPYCELSRTYTKMRGEASQLFRAVESSGL 1011

Query: 1007 FTEMLSANEIDVESLSADNAISFASKLQLLGSNSDGSESLSRQMLDDIESIKQRMLTTSG 1066
            F  +LS  ++D ESL+AD+A+SFASKL LL  ++ G ES+ R ++DD+ES+KQR+LTTSG
Sbjct: 1012 FENLLSTTKVDPESLTADDAMSFASKLSLLVGDTSGEESMGRNIVDDLESLKQRLLTTSG 1071

Query: 1067 YLKCVQSNLHVTVSALVAAAVVWMSELPARLNPIILPLMASIKREQEEKLQEKAAEALAE 1126
            YLKCVQSNLHV+VSALVAAAVVWMSELPA+LNPIILPLMAS+KREQEE LQ+KAAEALAE
Sbjct: 1072 YLKCVQSNLHVSVSALVAAAVVWMSELPAKLNPIILPLMASVKREQEEILQQKAAEALAE 1131

Query: 1127 LIADCIARKPSPNDKLIKNICSLTSMDPCETPQAAAMGSMEIIDDQDFLSFGSSTGKQKS 1186
            LI  CI R+P PNDKLIKN+CSLT MDPCETPQA A+ SME+I+DQD LSFGSSTGKQKS
Sbjct: 1132 LICRCITRRPGPNDKLIKNLCSLTCMDPCETPQAGAISSMEVIEDQDLLSFGSSTGKQKS 1191

Query: 1187 RAHMLAGGEDRSRVEGFISRRGSELALRHLCGKFGVSLFDKLPKLWDCLTEVLIPDG--- 1243
            + H+LAGGEDRS+VEGFISRRGSEL L+HLC KFG SLFDKLPKLWDCLTEVL P     
Sbjct: 1192 KVHILAGGEDRSKVEGFISRRGSELTLKHLCEKFGASLFDKLPKLWDCLTEVLKPGSIAE 1251

Query: 1244 --PSNKKKIILAIESVRDPQILINNIQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHSHV 1301
              P ++ +     ES++DPQILINNIQ+VRSI+PML+E +KPKLLTLLPCIFKCV HSHV
Sbjct: 1252 LTPEDENETKPVFESIKDPQILINNIQVVRSISPMLEETVKPKLLTLLPCIFKCVRHSHV 1311

Query: 1302 SVRLAASRCITSMAKSMTINVMAAVVENAIPMLGDMTSVHARQGAGMLISLLVQGLGAEL 1361
            +VRLAASRCITSMAKSMT +VM AV+EN IPMLGDM+SVH RQGAGML++LLVQGLG EL
Sbjct: 1312 AVRLAASRCITSMAKSMTTSVMGAVIENVIPMLGDMSSVHTRQGAGMLVNLLVQGLGVEL 1371

Query: 1362 VPYAPLLVVPLLRCMSDCDQSVRQSVTRSFASLVPLLPLARGVSPPTGLTEGLSRNAEDA 1421
            VPYAPLLVVPLLRCMSDCD SVRQSVT SFA+LVPLLPLARGVSPP GL+E L +N EDA
Sbjct: 1372 VPYAPLLVVPLLRCMSDCDHSVRQSVTHSFAALVPLLPLARGVSPPVGLSESLLKNTEDA 1431

Query: 1422 QFLEQLLDNSHIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQA 1481
            QFLEQLLDNSHIDDYKL TELKVTLRRYQQEGINWLAFL+RFKLHGILCDDMGLGKTLQA
Sbjct: 1432 QFLEQLLDNSHIDDYKLSTELKVTLRRYQQEGINWLAFLRRFKLHGILCDDMGLGKTLQA 1491

Query: 1482 SAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDR 1541
            SAIVASDI E R S       PSLIICPSTLVGHWA+EIEK+ID S+++TLQYVGSA DR
Sbjct: 1492 SAIVASDIEEHRTSKD-GAYPPSLIICPSTLVGHWAYEIEKYIDSSVITTLQYVGSAHDR 1550

Query: 1542 IALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAA 1601
            ++L+  F+KHNVIITSYDVVRKD DYLGQLLWNYCILDEGHIIKNSKSKIT AVKQLKA 
Sbjct: 1551 MSLQGLFEKHNVIITSYDVVRKDVDYLGQLLWNYCILDEGHIIKNSKSKITSAVKQLKAQ 1610

Query: 1602 HRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGV 1661
            HRLILSGTPIQNNI DLWSLFDFLMPGFLGTERQFQATYGKPL AARDSKCSAKDAEAG 
Sbjct: 1611 HRLILSGTPIQNNILDLWSLFDFLMPGFLGTERQFQATYGKPLQAARDSKCSAKDAEAGA 1670

Query: 1662 LAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISS 1721
            LAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDL  VQLKLYE+FSGS  + EISS
Sbjct: 1671 LAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLCPVQLKLYEQFSGSHVRHEISS 1730

Query: 1722 MVKVDESADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPG 1781
            +VK +ES D GEGN+ S KAS+HVFQALQYLLKLC HPLLV+G+K P+SL   LSE FPG
Sbjct: 1731 IVKRNESTDTGEGNSASPKASSHVFQALQYLLKLCGHPLLVVGEKIPDSLTTILSEFFPG 1790

Query: 1782 SSDIISELHK 1791
            +SDI+SELHK
Sbjct: 1791 TSDIMSELHK 1800

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359489057\|ref\|XP_003633864.1\| PREDICTED: TATA-binding protein-associated factor 172 isoform 3 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359489054\|ref\|XP_003633863.1\| PREDICTED: TATA-binding protein-associated factor 172 isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224126033\|ref\|XP_002319739.1\| chromatin remodeling complex subunit [Populus trichocarpa] gi\|222858115\|gb\|EEE95662.1\| chromatin remodeling complex subunit [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356543311\|ref\|XP_003540105.1\| PREDICTED: TATA-binding protein-associated factor 172-like [Glycine max]	Back alignment and taxonomy information

>gi\|356531732\|ref\|XP_003534430.1\| PREDICTED: TATA-binding protein-associated factor 172-like isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|334185968\|ref\|NP_190996.3\| TATA box binding protein associated factor-like protein [Arabidopsis thaliana] gi\|197691963\|dbj\|BAG70033.1\| homolog of human BTAF1 [Arabidopsis thaliana] gi\|332645686\|gb\|AEE79207.1\| TATA box binding protein associated factor-like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|356531734\|ref\|XP_003534431.1\| PREDICTED: TATA-binding protein-associated factor 172-like isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|334185970\|ref\|NP_001190085.1\| TATA box binding protein associated factor-like protein [Arabidopsis thaliana] gi\|332645687\|gb\|AEE79208.1\| TATA box binding protein associated factor-like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|6822074\|emb\|CAB71002.1\| TATA box binding protein (TBP) associated factor (TAF)-like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1806
ZFIN\|ZDB-GENE-021025-1		1861	btaf1 "BTAF1 RNA polymerase II	0.334	0.324	0.437	1.5e-239
DICTYBASE\|DDB_G0286219		2005	DDB_G0286219 "putative TBP-ass	0.305	0.275	0.464	2.9e-236
UNIPROTKB\|O14981		1849	BTAF1 "TATA-binding protein-as	0.336	0.328	0.438	3e-233
RGD\|1564130		1848	Btaf1 "BTAF1 RNA polymerase II	0.336	0.328	0.442	1.9e-231
UNIPROTKB\|F1SCA0		1850	BTAF1 "Uncharacterized protein	0.336	0.328	0.439	2.3e-229
UNIPROTKB\|F1NHJ5		1845	BTAF1 "Uncharacterized protein	0.336	0.329	0.438	2e-222
UNIPROTKB\|E2QWL4		1879	BTAF1 "Uncharacterized protein	0.336	0.323	0.442	2.2e-216
UNIPROTKB\|F1N507		1845	Bt.112326 "Uncharacterized pro	0.334	0.327	0.440	2.5e-213
CGD\|CAL0002614		1915	orf19.4502 [Candida albicans (	0.555	0.524	0.331	1.9e-187
FB\|FBgn0022787		1924	Hel89B "Helicase 89B" [Drosoph	0.341	0.320	0.427	2.1e-184

ZFIN\|ZDB-GENE-021025-1 btaf1 "BTAF1 RNA polymerase II, B-TFIID transcription factor-associated" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

 Score = 1292 (459.9 bits), Expect = 1.5e-239, Sum P(5) = 1.5e-239
 Identities = 274/626 (43%), Positives = 389/626 (62%)

Query:  1196 DRSRVEGFISRRGSELALRHLCGKFGVSLFDKLPKLWDCLTEVL---IPDGPSNKKKIIL 1252
             D S+    I RRG+E  L  +   F   L   LP LW+ +T  L   +     +  +++ 
Sbjct:  1024 DESKKPCLIQRRGAEFCLMTVARHFSKELTKTLPYLWESMTGPLRNALDAQEFDSSQLLK 1083

Query:  1253 AIESVRDPQILINNIQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHSHVSVRLAASRCIT 1312
               +SV   Q L+N++Q++   A  + + L P L+  LP +  C+ H + +VR  A+RC+ 
Sbjct:  1084 QGDSVA--QDLVNSLQVLEVTAGAMSQELIPLLMEQLPLLCTCLQHPYTAVRHMAARCVG 1141

Query:  1313 SMAKSMTINVMAAVVENAIPMLGDMTSVHARQGAGMLISLLVQGLGAEXXXXXXXXXXXX 1372
              ++K  T+  M   +E  +P LG +     ++GA   ++ +++ L  +            
Sbjct:  1142 VLSKIATMETMNVFLEQVLPWLGAIDDNTKQEGAIEALACVMEQLDVDIVPYIVLLVVPV 1201

Query:  1373 XRCMSD-CDQSVRQSVTRSFASLVPLLPLARGVSPPTGLTEGLSRN-AEDAQFLEQLLDN 1430
                MSD CD SVR   T+ FA+L+ LLPL  G+  P  ++E L R  A +  FLEQLLD 
Sbjct:  1202 LGRMSDPCD-SVRFMATQCFATLIRLLPLEAGIPDPPSMSEDLIRQKARERHFLEQLLDG 1260

Query:  1431 SHIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASD-- 1488
               +++YK+   +K  LR+YQQ+G+NWLAFL ++KLHGILCDDMGLGKTLQ+  I+A D  
Sbjct:  1261 RKLENYKIPVPIKAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHF 1320

Query:  1489 --IAERRASNSIEEIH-PSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALR 1545
                 E   + + +    PS+++CP TL GHW  E+ KF     ++ L Y G   +R  L+
Sbjct:  1321 LRAQEYTRTKAPDSCPLPSIVVCPPTLTGHWVDEVGKFCSKEFLNPLHYTGPPTERARLQ 1380

Query:  1546 EQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLI 1605
              Q  KHN+I+ SYDVVR D ++   + +NYCILDEGH+IKN K+K++ A+KQL A +RLI
Sbjct:  1381 HQVKKHNLIVASYDVVRNDVEFFRDIKFNYCILDEGHVIKNGKTKLSKAIKQLTANYRLI 1440

Query:  1606 LSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAME 1665
             LSGTPIQNN+ +LWSLFDFLMPGFLGTERQF A YGKP++A+RD+K S+++ EAGVLAME
Sbjct:  1441 LSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDAKSSSREQEAGVLAME 1500

Query:  1666 ALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKV 1725
             ALH+QV+PFLLRR KD+VL DLP KIIQD YC+LS +Q++LYE F+ S+AK  +  ++  
Sbjct:  1501 ALHRQVLPFLLRRMKDDVLQDLPPKIIQDYYCNLSPLQVQLYEDFAKSRAKVNVDDVIST 1560

Query:  1726 DESADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDI 1785
               + +  E   +  KA+ HVFQALQYL KLC+HP LVL  + PE    H++E        
Sbjct:  1561 ASTQEDEEKPKL--KATGHVFQALQYLRKLCNHPALVLTPQHPEYK--HITEQLSTQHSS 1616

Query:  1786 ISEL-H--KASSLSQI--SCSSGDNG 1806
             + ++ H  K S+L Q+   C  G  G
Sbjct:  1617 LRDIQHAPKLSALKQLLLDCGLGSAG 1642

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

DICTYBASE\|DDB_G0286219 DDB_G0286219 "putative TBP-associated factor" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|O14981 BTAF1 "TATA-binding protein-associated factor 172" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1564130 Btaf1 "BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, (Mot1 homolog, S. cerevisiae)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SCA0 BTAF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NHJ5 BTAF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QWL4 BTAF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N507 Bt.112326 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

CGD\|CAL0002614 orf19.4502 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

FB\|FBgn0022787 Hel89B "Helicase 89B" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.4.12	LOW CONFIDENCE prediction!
3rd Layer	3.6.4	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	CHR920	chromatin remodeling complex subunit (2046 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	GTF901	global transcription factor group (202 aa)		•	•	0.462
	GTF902	global transcription factor group (201 aa)		•	•	0.460
	gw1.I.2689.1	hypothetical protein (1334 aa)	•	•		0.417

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1806
pfam12054		442	pfam12054, DUF3535, Domain of unknown function (DU	2e-96
pfam00176		301	pfam00176, SNF2_N, SNF2 family N-terminal domain	6e-89
COG0553		866	COG0553, HepA, Superfamily II DNA/RNA helicases, S	1e-63
PLN03142		1033	PLN03142, PLN03142, Probable chromatin-remodeling	6e-42
smart00487		201	smart00487, DEXDc, DEAD-like helicases superfamily	2e-24
cd00046		144	cd00046, DEXDc, DEAD-like helicases superfamily	2e-16
COG1061		442	COG1061, SSL2, DNA or RNA helicases of superfamily	5e-05
pfam13513		55	pfam13513, HEAT_EZ, HEAT-like repeat	7e-04
pfam13646		88	pfam13646, HEAT_2, HEAT repeats	9e-04

>gnl\|CDD\|221397 pfam12054, DUF3535, Domain of unknown function (DUF3535)	Back alignment and domain information

 Score =  318 bits (818), Expect = 2e-96
 Identities = 144/479 (30%), Positives = 213/479 (44%), Gaps = 63/479 (13%)

Query: 783  VWRLLVQS-PVEDLEAAGGKFMSSWIELATTPFGSS-----LDATKMFWPVALP------ 830
            VW  L+Q  P   L+AA    +  W+ L  TP G +     +DA+ +  P   P      
Sbjct: 1    VWEALLQHAPPFALDAAFCPHLEPWLCLLMTPIGVARHPYPMDASLLLKPSGNPLGGPSG 60

Query: 831  -RKSHFKAAAKMRAVKLENDSSGSVDLPQERNGDTSTNSVKITVGSDLEMSVTNTRVVTA 889
             ++       K   +   + S  +VD P    GD         VG D    V  TR+  A
Sbjct: 61   PKRRSRSEDTKESDIDPPSSSRHNVDGP-MLAGD------VELVGED---VVIRTRISAA 110

Query: 890  SALGIFASKLHEGSIQFVIDP-LWNALTSFSGVQRQVAAMVFISWFKEIKSEELPGSAAV 948
             ALG+  S L E ++  V DP L   LTS S  QR +A+++   W K  K          
Sbjct: 111  KALGLLLSYLPEPTLGVVFDPVLLGGLTSPSATQRLLASIIIAEWAKNDKP--------- 161

Query: 949  LPNLPGHLKQWLLDLLACSDPTYPTKDSLLPYAELSRTYGKMRNEASQLLRAMETSSMF- 1007
                P  L   LL +L   +P Y        Y EL  +  ++R +  QLL          
Sbjct: 162  GKPAPSLLSPRLLTILENEEPPY--------YDELVPSLKRLRTQCQQLLNTFVDVGKLS 213

Query: 1008 --------TEMLSANEIDVESLSADNAISFASKL--QLLGSNSDGSESLSRQMLDDIESI 1057
                      +    E   E+ S + A    +    +L  S S   +      L  +E  
Sbjct: 214  QSKLPSLAVVVQGEPEAGPEAFSIETAEKVVTTDFDKLKKSLSPKQK---LTALQALEDA 270

Query: 1058 KQRMLTTSGYLKCVQSNLHVTVSALVAAAVVWMSELPARLNPIILPLMASIKREQEEKLQ 1117
            ++R+L      K  +   H+ + A  A+A+V +  LP +LNP+I PLM SIKRE+ E+LQ
Sbjct: 271  RRRLLAAIEEAKEAKEKRHIRILAAAASALVALGGLPKKLNPVIKPLMDSIKREENEELQ 330

Query: 1118 EKAAEALAELIADCI-ARKPSPNDKLIKNICSLTSMDPCETPQAAAMGSMEIIDDQDFLS 1176
            +++A ++A LI  C   RKP PNDK++KN+C+   +D  ETP+         I  +  LS
Sbjct: 331  QRSAASVARLIQQCTSTRKPGPNDKIVKNLCAFLCVDTSETPEFGHN----EIVTEGILS 386

Query: 1177 FGSSTGKQKSRAHMLAGGEDRSRVEGFISRRGSELALRHLCGKFGVSLFDKLPKLWDCL 1235
                  ++K + H+ A   +    E  I RRG+ELAL  L  KFG  LF+K+PKLW+ +
Sbjct: 387  LRK---EEKKKDHVDAAKFEEEVKEARIKRRGAELALEQLAKKFGAELFEKVPKLWELM 442

This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with pfam00271, pfam02985, pfam00176. This domain has two completely conserved residues (P and K) that may be functionally important. Length = 442

>gnl\|CDD\|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain	Back alignment and domain information

>gnl\|CDD\|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>gnl\|CDD\|214692 smart00487, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|238005 cd00046, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|205691 pfam13513, HEAT_EZ, HEAT-like repeat	Back alignment and domain information

>gnl\|CDD\|222285 pfam13646, HEAT_2, HEAT repeats	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1806
KOG0392		1549	consensus SNF2 family DNA-dependent ATPase domain-	100.0
PF12054		441	DUF3535: Domain of unknown function (DUF3535); Int	100.0
KOG0387		923	consensus Transcription-coupled repair protein CSB	100.0
KOG0385		971	consensus Chromatin remodeling complex WSTF-ISWI,	100.0
KOG0391		1958	consensus SNF2 family DNA-dependent ATPase [Genera	100.0
KOG0388		1185	consensus SNF2 family DNA-dependent ATPase [Replic	100.0
KOG0389		941	consensus SNF2 family DNA-dependent ATPase [Chroma	100.0
PLN03142		1033	Probable chromatin-remodeling complex ATPase chain	100.0
KOG0384		1373	consensus Chromodomain-helicase DNA-binding protei	100.0
KOG0386		1157	consensus Chromatin remodeling complex SWI/SNF, co	100.0
PF00176		299	SNF2_N: SNF2 family N-terminal domain; InterPro: I	100.0
KOG0390		776	consensus DNA repair protein, SNF2 family [Replica	100.0
KOG4439		901	consensus RNA polymerase II transcription terminat	100.0
KOG1015		1567	consensus Transcription regulator XNP/ATRX, DEAD-b	100.0
KOG1002		791	consensus Nucleotide excision repair protein RAD16	100.0
COG0553		866	HepA Superfamily II DNA/RNA helicases, SNF2 family	100.0
KOG1016		1387	consensus Predicted DNA helicase, DEAD-box superfa	100.0
KOG0383		696	consensus Predicted helicase [General function pre	99.97
KOG1001		674	consensus Helicase-like transcription factor HLTF/	99.97
KOG1000		689	consensus Chromatin remodeling protein HARP/SMARCA	99.97
PRK04914		956	ATP-dependent helicase HepA; Validated	99.96
KOG0298		1394	consensus DEAD box-containing helicase-like transc	99.91
TIGR00603		732	rad25 DNA repair helicase rad25. All proteins in t	99.84
COG1061		442	SSL2 DNA or RNA helicases of superfamily II [Trans	99.55
PF04851		184	ResIII: Type III restriction enzyme, res subunit;	99.53
PRK13766		773	Hef nuclease; Provisional	99.5
PHA02558		501	uvsW UvsW helicase; Provisional	99.43
smart00487		201	DEXDc DEAD-like helicases superfamily.	99.41
cd00046		144	DEXDc DEAD-like helicases superfamily. A diverse f	99.36
KOG1123		776	consensus RNA polymerase II transcription initiati	99.29
PRK11448		1123	hsdR type I restriction enzyme EcoKI subunit R; Pr	99.18
cd00268		203	DEADc DEAD-box helicases. A diverse family of prot	99.06
PF00270		169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	99.05
TIGR00348		667	hsdR type I site-specific deoxyribonuclease, HsdR	99.05
COG1111		542	MPH1 ERCC4-like helicases [DNA replication, recomb	99.0
TIGR00643		630	recG ATP-dependent DNA helicase RecG.	98.91
COG4096		875	HsdR Type I site-specific restriction-modification	98.88
KOG0354		746	consensus DEAD-box like helicase [General function	98.78
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	98.77
PRK11192		434	ATP-dependent RNA helicase SrmB; Provisional	98.76
PRK10590		456	ATP-dependent RNA helicase RhlE; Provisional	98.76
TIGR00580		926	mfd transcription-repair coupling factor (mfd). Al	98.71
PTZ00424		401	helicase 45; Provisional	98.69
PRK10689		1147	transcription-repair coupling factor; Provisional	98.68
PRK11776		460	ATP-dependent RNA helicase DbpA; Provisional	98.67
TIGR00614		470	recQ_fam ATP-dependent DNA helicase, RecQ family.	98.67
PF13872		303	AAA_34: P-loop containing NTP hydrolase pore-1	98.67
PLN00206		518	DEAD-box ATP-dependent RNA helicase; Provisional	98.64
PRK01172		674	ski2-like helicase; Provisional	98.6
PRK02362		737	ski2-like helicase; Provisional	98.6
PRK04837		423	ATP-dependent RNA helicase RhlB; Provisional	98.57
PRK13767		876	ATP-dependent helicase; Provisional	98.54
PRK01297		475	ATP-dependent RNA helicase RhlB; Provisional	98.54
PRK11634		629	ATP-dependent RNA helicase DeaD; Provisional	98.54
PTZ00110		545	helicase; Provisional	98.53
PRK04537		572	ATP-dependent RNA helicase RhlB; Provisional	98.51
COG1204		766	Superfamily II helicase [General function predicti	98.51
PRK00254		720	ski2-like helicase; Provisional	98.51
PRK11057		607	ATP-dependent DNA helicase RecQ; Provisional	98.5
TIGR01389		591	recQ ATP-dependent DNA helicase RecQ. The ATP-depe	98.48
PRK09401		1176	reverse gyrase; Reviewed	98.48
COG4889		1518	Predicted helicase [General function prediction on	98.38
COG1200		677	RecG RecG-like helicase [DNA replication, recombin	98.37
COG1205		851	Distinct helicase family with a unique C-terminal	98.35
TIGR03817		742	DECH_helic helicase/secretion neighborhood putativ	98.29
PRK05580		679	primosome assembly protein PriA; Validated	98.28
TIGR03158		357	cas3_cyano CRISPR-associated helicase, Cyano-type.	98.23
PLN03137		1195	ATP-dependent DNA helicase; Q4-like; Provisional	98.04
TIGR01054		1171	rgy reverse gyrase. Generally, these gyrases are e	98.04
COG1201		814	Lhr Lhr-like helicases [General function predictio	98.03
TIGR00595		505	priA primosomal protein N'. All proteins in this f	97.91
TIGR01587		358	cas3_core CRISPR-associated helicase Cas3. This mo	97.91
TIGR03714		762	secA2 accessory Sec system translocase SecA2. Memb	97.9
COG1197		1139	Mfd Transcription-repair coupling factor (superfam	97.86
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.85
COG0610		962	Type I site-specific restriction-modification syst	97.83
PF07652		148	Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR	97.71
PHA02653		675	RNA helicase NPH-II; Provisional	97.57
PRK14701		1638	reverse gyrase; Provisional	97.57
TIGR02621		844	cas3_GSU0051 CRISPR-associated helicase Cas3, Anae	97.56
PRK09751		1490	putative ATP-dependent helicase Lhr; Provisional	97.47
COG1110		1187	Reverse gyrase [DNA replication, recombination, an	97.4
PRK09694		878	helicase Cas3; Provisional	97.39
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	97.39
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.38
KOG0331		519	consensus ATP-dependent RNA helicase [RNA processi	97.34
KOG0350		620	consensus DEAD-box ATP-dependent RNA helicase [RNA	97.33
KOG0952		1230	consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup	97.32
KOG0330		476	consensus ATP-dependent RNA helicase [RNA processi	97.32
smart00489		289	DEXDc3 DEAD-like helicases superfamily.	97.3
smart00488		289	DEXDc2 DEAD-like helicases superfamily.	97.3
PRK15483		986	type III restriction-modification system StyLTI en	97.27
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.25
TIGR01407		850	dinG_rel DnaQ family exonuclease/DinG family helic	97.08
PRK09200		790	preprotein translocase subunit SecA; Reviewed	97.06
COG4098		441	comFA Superfamily II DNA/RNA helicase required for	97.06
COG4581		1041	Superfamily II RNA helicase [DNA replication, reco	97.05
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.98
KOG0392		1549	consensus SNF2 family DNA-dependent ATPase domain-	96.86
PRK12899		970	secA preprotein translocase subunit SecA; Reviewed	96.85
TIGR03117		636	cas_csf4 CRISPR-associated DEAD/DEAH-box helicase	96.85
KOG0335		482	consensus ATP-dependent RNA helicase [RNA processi	96.78
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	96.72
KOG0947		1248	consensus Cytoplasmic exosomal RNA helicase SKI2,	96.7
COG0513		513	SrmB Superfamily II DNA and RNA helicases [DNA rep	96.66
COG1202		830	Superfamily II helicase, archaea-specific [General	96.58
COG0514		590	RecQ Superfamily II DNA helicase [DNA replication,	96.56
PRK12898		656	secA preprotein translocase subunit SecA; Reviewed	96.45
TIGR01970		819	DEAH_box_HrpB ATP-dependent helicase HrpB. This mo	96.42
PRK11664		812	ATP-dependent RNA helicase HrpB; Provisional	96.4
TIGR00963		745	secA preprotein translocase, SecA subunit. The pro	96.37
KOG0343		758	consensus RNA Helicase [RNA processing and modific	96.23
TIGR00604		705	rad3 DNA repair helicase (rad3). All proteins in t	96.23
KOG1824		1233	consensus TATA-binding protein-interacting protein	96.19
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	96.17
PF13401		131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.14
PF13086		236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	96.14
KOG1824		1233	consensus TATA-binding protein-interacting protein	96.12
COG1203		733	CRISPR-associated helicase Cas3 [Defense mechanism	96.1
PRK07246		820	bifunctional ATP-dependent DNA helicase/DNA polyme	95.99
PRK13104		896	secA preprotein translocase subunit SecA; Reviewed	95.82
KOG0948		1041	consensus Nuclear exosomal RNA helicase MTR4, DEAD	95.74
PF02562		205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	95.6
KOG0338		691	consensus ATP-dependent RNA helicase [RNA processi	95.55
PRK08074		928	bifunctional ATP-dependent DNA helicase/DNA polyme	95.26
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	95.24
KOG1513		1300	consensus Nuclear helicase MOP-3/SNO (DEAD-box sup	95.2
PRK10536		262	hypothetical protein; Provisional	95.09
KOG0342		543	consensus ATP-dependent RNA helicase pitchoune [RN	95.04
KOG0347		731	consensus RNA helicase [RNA processing and modific	95.01
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	94.84
KOG0345		567	consensus ATP-dependent RNA helicase [RNA processi	94.76
COG1198		730	PriA Primosomal protein N' (replication factor Y)	94.74
KOG1131		755	consensus RNA polymerase II transcription initiati	94.69
KOG1132		945	consensus Helicase of the DEAD superfamily [Replic	94.59
KOG0348		708	consensus ATP-dependent RNA helicase [RNA processi	94.59
PRK12326		764	preprotein translocase subunit SecA; Reviewed	94.58
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	94.51
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	94.48
PRK13103		913	secA preprotein translocase subunit SecA; Reviewed	94.4
PF07517		266	SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011	94.22
PRK12904		830	preprotein translocase subunit SecA; Reviewed	94.14
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	94.12
PF13604		196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	94.06
KOG0353		695	consensus ATP-dependent DNA helicase [General func	94.06
PRK13107		908	preprotein translocase subunit SecA; Reviewed	93.97
KOG1803		649	consensus DNA helicase [Replication, recombination	93.84
KOG0339		731	consensus ATP-dependent RNA helicase [RNA processi	93.65
PRK14873		665	primosome assembly protein PriA; Provisional	93.61
COG3587		985	Restriction endonuclease [Defense mechanisms]	93.61
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	93.37
TIGR00376		637	DNA helicase, putative. The gene product may repre	93.32
TIGR01967		1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	93.24
PRK11131		1294	ATP-dependent RNA helicase HrpA; Provisional	93.18
COG1199		654	DinG Rad3-related DNA helicases [Transcription / D	92.74
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	92.37
KOG1805		1100	consensus DNA replication helicase [Replication, r	92.15
PF11496		297	HDA2-3: Class II histone deacetylase complex subun	92.07
COG0556		663	UvrB Helicase subunit of the DNA excision repair c	92.07
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	92.05
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	92.01
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	91.89
PRK11747		697	dinG ATP-dependent DNA helicase DinG; Provisional	91.77
PRK04296		190	thymidine kinase; Provisional	91.63
PRK12906		796	secA preprotein translocase subunit SecA; Reviewed	91.51
KOG0340		442	consensus ATP-dependent RNA helicase [RNA processi	91.5
PF12340		229	DUF3638: Protein of unknown function (DUF3638); In	91.48
PF09848		352	DUF2075: Uncharacterized conserved protein (DUF207	91.03
PTZ00429		746	beta-adaptin; Provisional	90.54
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	90.47
KOG1802		935	consensus RNA helicase nonsense mRNA reducing fact	90.35
cd00009		151	AAA The AAA+ (ATPases Associated with a wide varie	90.31
KOG0328		400	consensus Predicted ATP-dependent RNA helicase FAL	90.0
KOG1242		569	consensus Protein containing adaptin N-terminal re	89.98
TIGR01447		586	recD exodeoxyribonuclease V, alpha subunit. This f	89.67
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	89.6
KOG4284		980	consensus DEAD box protein [Transcription]	89.43
KOG0950		1008	consensus DNA polymerase theta/eta, DEAD-box super	89.25
KOG0336		629	consensus ATP-dependent RNA helicase [RNA processi	89.23
KOG0333		673	consensus U5 snRNP-like RNA helicase subunit [RNA	88.5
COG1875		436	NYN ribonuclease and ATPase of PhoH family domains	88.27
KOG0341		610	consensus DEAD-box protein abstrakt [RNA processin	87.86
PRK12902		939	secA preprotein translocase subunit SecA; Reviewed	87.34
TIGR01448		720	recD_rel helicase, putative, RecD/TraA family. Thi	87.24
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	86.88
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	86.49
PRK09687		280	putative lyase; Provisional	86.2
KOG0352		641	consensus ATP-dependent DNA helicase [Replication,	85.9
PLN03025		319	replication factor C subunit; Provisional	85.47
PRK12901		1112	secA preprotein translocase subunit SecA; Reviewed	85.44
smart00382		148	AAA ATPases associated with a variety of cellular	85.26
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	85.15
PRK10875		615	recD exonuclease V subunit alpha; Provisional	84.73
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	84.65
KOG0334		997	consensus RNA helicase [RNA processing and modific	84.6
KOG0346		569	consensus RNA helicase [RNA processing and modific	84.46
TIGR02881		261	spore_V_K stage V sporulation protein K. Members o	84.45
PRK07003		830	DNA polymerase III subunits gamma and tau; Validat	84.21
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	83.6
PRK12900		1025	secA preprotein translocase subunit SecA; Reviewed	83.48
KOG0926		1172	consensus DEAH-box RNA helicase [RNA processing an	83.11
PHA02533		534	17 large terminase protein; Provisional	82.99
PF02399		824	Herpes_ori_bp: Origin of replication binding prote	82.96
PRK09687		280	putative lyase; Provisional	82.54
KOG0337		529	consensus ATP-dependent RNA helicase [RNA processi	82.53
KOG0351		941	consensus ATP-dependent DNA helicase [Replication,	82.53
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	82.43
PF06733		174	DEAD_2: DEAD_2; InterPro: IPR010614 This represent	82.38
TIGR00631		655	uvrb excinuclease ABC, B subunit. This family is b	82.08
KOG1820		815	consensus Microtubule-associated protein [Cytoskel	82.07
PRK12323		700	DNA polymerase III subunits gamma and tau; Provisi	81.95
PRK12723		388	flagellar biosynthesis regulator FlhF; Provisional	81.87
cd08050		343	TAF6 TATA Binding Protein (TBP) Associated Factor	81.19
TIGR02562		1110	cas3_yersinia CRISPR-associated helicase Cas3. The	80.52
KOG0949		1330	consensus Predicted helicase, DEAD-box superfamily	80.5
TIGR03420		226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	80.27

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]	Back alignment and domain information

Probab=100.00  E-value=3e-241  Score=2206.83  Aligned_cols=1304  Identities=45%  Similarity=0.706  Sum_probs=1114.7

Q ss_pred             CCCCHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCcccccCCCCCcCCCCCCCchHHHH
Q 000237          225 KRPSARELNMLKRKAKISSKDQSKSWSEDGDMEVPHAQNVTTPKGSCGDPFNSNKADAVLDEDSSEHEGDGLWPFRSFVE  304 (1806)
Q Consensus       225 ~~lSaRe~n~~KRkak~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~WPf~~~~e  304 (1806)
                      .++|.||.|+.||++|.+.|..--...+....+++.+...++ +....+.+  |..++..++.+...++++.|||++|||
T Consensus         4 ~r~~~~~~~~~k~~~k~~~~~~~~s~~~~~~~~ss~~~~~~t-~~~l~~~~--d~~~~~~~e~~~~~d~~~~w~f~s~~e   80 (1549)
T KOG0392|consen    4 ARSSLREINKKKRMAKFSFKTKFLSDDEALHQGSSEPDQPST-KRELDEVV--DKSKAFDEENDNCPDGERQWPFLSFLE   80 (1549)
T ss_pred             ccccchhHHHHHhhhhcccccccccCchhhccCCCCCCCcch-hhhhhhhc--chhhccccccCCCCCccccccHHHHHH
Confidence            458999999999999999883211111111111111111111 11112222  444444444444466778999999999


Q ss_pred             HHHHhcCCCcchhhhhhHHHHHHHHHhcCCCcccccCCCCCCCCcccccccccchhhhhhhhhccccCCCCCCCcchhcc
Q 000237          305 QLILDMFDPVWEVRHGSVMALREILTHHGASAGVFMPELGPDGALNVEFKDKDSITMKREREIDLNVQVPADEPEPLLKK  384 (1806)
Q Consensus       305 ~L~~DLFdp~WEvRHGAa~gLREilk~hg~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (1806)
                      +|+.|||+|+||+|||||+|||||++.||+++|+                                              
T Consensus        81 ~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~----------------------------------------------  114 (1549)
T KOG0392|consen   81 ELVNDLFEPQWEIRHGAAIALREILKTHGDSLSY----------------------------------------------  114 (1549)
T ss_pred             HHHHHhcCchhhhhcCcchhhhhHHHHhcchhhH----------------------------------------------
Confidence            9999999999999999999999999999977542                                              


Q ss_pred             cccCCCCCCccccccccCCCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCcCCCCCCCcccccccCcCCCCCC
Q 000237          385 MKFEDAPPPLMDTMVSPVNCDGCNISIKVDDSGCNLPAGSVNGQLDLSSVKVEPESNLDGLSHPSKEAIDILEPRGQSGE  464 (1806)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (1806)
                                                                                                      
T Consensus       115 --------------------------------------------------------------------------------  114 (1549)
T KOG0392|consen  115 --------------------------------------------------------------------------------  114 (1549)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCccccccccCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccCCcCCCccccchhhhHHHHHHHHhhcC
Q 000237          465 KGDFLNSETLKNLPENSELMNWLKLARHSWQKNCEFLQDCAIRFLCILSLDRFGDYVSDQVVAPVRETCAQALGAAFKYM  544 (1806)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~wLeDlaiRlLCVlaLDRFGDyVSDqVVAPVRET~AQ~Lgall~~m  544 (1806)
                                                        +-||||++||||||+|||||||+||+|||||||+||||||++++||
T Consensus       115 ----------------------------------~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~~  160 (1549)
T KOG0392|consen  115 ----------------------------------ELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLKHM  160 (1549)
T ss_pred             ----------------------------------HHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHhh
Confidence                                              0189999999999999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHhhccCCceeeecccccchhhhhhhhhhhHHhHHhhHHHHHHccCCCCCchHHHhHHhhhhhhHHHHH
Q 000237          545 HPSLVYETLYILLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLHGLLGYVLPACRAGLEDPDDDVRAVAADALIPTAAAIV  624 (1806)
Q Consensus       545 ~~~~v~~~~~iLl~~q~~~~WEvrHGgLLGiKYlvAVR~dll~~lL~~Vl~a~~~GL~D~DDDVraVAA~~L~Pia~~~v  624 (1806)
                      +++.++++++|+++|+++++||+||||||||||.||+|+|++..+++.|++.|++||+|+|||||+|||++|+|+++.+|
T Consensus       161 ~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~v  240 (1549)
T KOG0392|consen  161 DESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQV  240 (1549)
T ss_pred             hhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhchhhHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhcCchhhHHhhccccccccccchhcccccCCCCCCCCCCchh
Q 000237          625 ALDGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQANPYM  704 (1806)
Q Consensus       625 ~~~~~~l~~il~~LWd~L~~lDDLs~St~svM~LLa~l~s~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  704 (1806)
                      ++..+++..|+++||+.|.+||||++||+|+|+||+++|.++||++......                            
T Consensus       241 ~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n----------------------------  292 (1549)
T KOG0392|consen  241 KLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQN----------------------------  292 (1549)
T ss_pred             hhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhh----------------------------
Confidence            9999999999999999999999999999999999999999999987653221                            


Q ss_pred             h-hcccccccccccccchhhHHHHHHHHHHHHHhccccccccCCCCCCCchhchhhHHHHHHHHHhccchHHHHHHHHHH
Q 000237          705 L-SMLAPRLWPFMRHSITSVRHSAIRTLERLLEAGYKRMIAESSGGSFWPSFILGDTLRIVFQNLLLESNEEILQCSDRV  783 (1806)
Q Consensus       705 l-~~LvPRL~PFlrHsitsVR~a~l~tL~~ll~~~~~~~~~~~~~~~~W~~~i~~~~LR~vFQnlLlE~~~~I~~~s~~v  783 (1806)
                      + ..||||+|||+||+|+|||.|+++|+.+|++++++       +.+ |...++++++|+||||+++|+..++++++++|
T Consensus       293 ~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~~q-------s~~-~~~~~l~~~~r~ifq~ll~e~~~e~L~~~~~~  364 (1549)
T KOG0392|consen  293 LEVGLVPRLWPFLRHTISSVRRAALETLAMLLEADDQ-------SDS-WQIRILGKLFRKIFQILLLESFNEILDLSEKV  364 (1549)
T ss_pred             hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------CCc-cchhhhHHHHHHHHHHHHhCCcHHHHHhhhhe
Confidence            2 48999999999999999999999999999999865       233 88889999999999999999999999999999


Q ss_pred             HHHHhcCChhhHHHhhhhhHHHHHHHhhcCCCCCCCCCccccccCCCccchhhHHHHHhhhhcccCC-CCCCC--CCCcc
Q 000237          784 WRLLVQSPVEDLEAAGGKFMSSWIELATTPFGSSLDATKMFWPVALPRKSHFKAAAKMRAVKLENDS-SGSVD--LPQER  860 (1806)
Q Consensus       784 W~~ll~~~~~~~~~~~~~~~~~wl~L~mtP~g~~~d~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~-~~~~~--~~~~~  860 (1806)
                      |.     ....++..++.|+..|+++++||+|.+++..+++++..  +..+...+..+.+  ..++. +.++.  .....
T Consensus       365 ~v-----~v~~~~k~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~q~~~~~~~~~g--~~~~~~s~~~~~~~~~~i  435 (1549)
T KOG0392|consen  365 WV-----TVSKIEKTAAAYLLSWIYLLIQPNGIPLGLVGLLDSGP--DWQHQFSALIAKG--YSKEFSSDKEGLCRKEVI  435 (1549)
T ss_pred             ee-----ehHHHHHHHHHHHHHHHHhhhCcCCChHhhhhccccCc--HHHHHHHHHHhhc--cccccccccchhhhhhhh
Confidence            97     45567888999999999999999999999999999873  3333322222222  11111 01110  01122


Q ss_pred             cCCCCCCcceeecCCcchhhhhhHHHHH-HHHHHHHHhhhcc-------chhHhHHHHHHHhhcCCchhHHHHHHHHHHH
Q 000237          861 NGDTSTNSVKITVGSDLEMSVTNTRVVT-ASALGIFASKLHE-------GSIQFVIDPLWNALTSFSGVQRQVAAMVFIS  932 (1806)
Q Consensus       861 n~d~~~~~~~~~~ggd~~lv~~~tRi~a-A~alG~l~~~~~~-------~~~~~~~~~L~~~L~S~sa~qR~~aalvi~e  932 (1806)
                      +.|++          +-|.+.+.+++.+ ++.+|.+.+.+..       ...+.+.+.+...+.|+++.||+.+++++++
T Consensus       436 ~l~~~----------~~D~~~ls~~il~~~~~~~~~~~~l~~~~~t~~~~~~~~~v~~l~~~l~sks~~~~~~vsi~~~~  505 (1549)
T KOG0392|consen  436 LLDSP----------DEDIVLLSAKILCHAKILGSLDLALEKCDSTIESEELISVVQLLNLPLLSKSYLQNIEVSIVPEE  505 (1549)
T ss_pred             cCCCC----------ccchhhhhhhhhcCCcchhHHHHHHHHhhhhhhhccchhHHHhhhhhhhhhhhhhccchhhhHHH
Confidence            23332          3344556677776 6777777665533       2344556777777889999999999999999


Q ss_pred             HHhhccccCCCCccCCCCCCCcchhHHHHHHHhccCCCCCCCCCCCChhhhhhHHHHHHHHHHHHHHHHHhccccccccc
Q 000237          933 WFKEIKSEELPGSAAVLPNLPGHLKQWLLDLLACSDPTYPTKDSLLPYAELSRTYGKMRNEASQLLRAMETSSMFTEMLS 1012 (1806)
Q Consensus       933 wa~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Y~El~~~l~~lr~ec~~Ll~~~~~~~~~~~~~~ 1012 (1806)
                      |+...+....      +|   +..++....+..+.+   +..+...+|+|+...++++|+||++|+.++.+++       
T Consensus       506 w~~~~~~~~~------~~---~~v~~~~L~i~~~~~---~vr~~~~~y~e~~~v~~~~~~ec~ell~~l~~~~-------  566 (1549)
T KOG0392|consen  506 WAALFPCGTS------PP---SEVKPSLLDILKNAD---IVRDEFLDYDELEVVLTELRNECRELIITLVDVR-------  566 (1549)
T ss_pred             HHHhccccCC------CC---ccccccHHHHHhhcc---cccccccchHHHHHHHHHHHHHHHHHHHHHHHhh-------
Confidence            9987765531      11   122222233333333   4555667999999999999999999999999876       


Q ss_pred             ccccccccccchhhHHHHHHhhccC-CCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhc
Q 000237         1013 ANEIDVESLSADNAISFASKLQLLG-SNSDGSESLSRQMLDDIESIKQRMLTTSGYLKCVQSNLHVTVSALVAAAVVWMS 1091 (1806)
Q Consensus      1013 ~~~ip~~~~~v~~~ie~A~~~~~~~-~~l~~~~~~~~~~~~~le~~r~~l~~~i~~~~~~~~~~~~~V~A~~A~A~v~l~ 1091 (1806)
                       ...|...+...++-    ++.+.. +....++...+.... ++++|++++.+++++|+....++++|.|.+|+|++++.
T Consensus       567 -~~~~n~~~l~~~~~----~v~~s~y~~~~~~~~~~~q~l~-~~ss~~~v~~~~~~~k~~~~~~~~~i~s~~a~~~~~~~  640 (1549)
T KOG0392|consen  567 -RDLPNNEILTFDET----DVGGSLYEEYSENDFLEKQVLY-LDSSRQQVLMTIEILKNRCKLLEIRIKSLLASAVVTFE  640 (1549)
T ss_pred             -ccCccchheeechh----hhhhhhchhhcccccCCchhee-ecchhhHHHhhHHHHHHHHhhcchhhhhchhhHHHHHh
Confidence             22333322222221    455555 666666666676666 99999999999999999999999999999999999999


Q ss_pred             CCCCCCCcchHHHHHhhhhhchHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHhhhhccCCCCCCCccccCCCcccccc
Q 000237         1092 ELPARLNPIILPLMASIKREQEEKLQEKAAEALAELIADCIARKPSPNDKLIKNICSLTSMDPCETPQAAAMGSMEIIDD 1171 (1806)
Q Consensus      1092 ~LP~KLNPiIkpLMeSIK~EEn~~LQ~~sA~sla~Li~~~~~~~~~p~~KIikNLc~flC~D~~~tP~~~~~~~~~~~~~ 1171 (1806)
                      .+|.||||+|+|+|++||+|+|..+|..+++++++|+++|.+|+|+|+.|++||+|.+.|+||+++|...  .+..+.. 
T Consensus       641 ~~pekl~p~I~plm~tik~e~n~~~q~~~~e~~~~L~~~~~~r~p~~~~k~~k~~c~~~~~~p~~~p~~~--a~~~~~~-  717 (1549)
T KOG0392|consen  641 TLPEKLNPIIRPLMETIKKEENAMLQPAAAEALAYLIQQCKDRKPNPYGKPLKKACESECVDPSRAPGLG--ASIRSIH-  717 (1549)
T ss_pred             cCchhhhhHHHHHHHHHHhhhHhHhHHHHHHHHHHHHHHHhccCCCccccHHHHHHhhhcCCcccCCccc--ccccccc-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999854  2222222 


Q ss_pred             ccccccccccCc-ccccccccCCCccccccchhhhcccHHHHHHHHHHHhccchhhhchhhHHHhhhhccCCCCCchhHH
Q 000237         1172 QDFLSFGSSTGK-QKSRAHMLAGGEDRSRVEGFISRRGSELALRHLCGKFGVSLFDKLPKLWDCLTEVLIPDGPSNKKKI 1250 (1806)
Q Consensus      1172 ~gilsl~~~~~~-~~~~~~~~~~~~~~~~~~~~i~RrGA~~al~~l~~~fg~~l~~~lP~L~~~~~~~l~~~~~~~~~~~ 1250 (1806)
                         .++...... ....+...+...++++..+.++||||+++|+.||+.||+++|+++|+||+|+++||....+.+    
T Consensus       718 ---~~~~~~~~s~~~~~~~~~~~g~eea~~~~~~errgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~----  790 (1549)
T KOG0392|consen  718 ---PMVDPLINDYTRMVASNLAPGLEEAQALISFERRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGN----  790 (1549)
T ss_pred             ---ccccccccchhhhhccccCcchhhhhhhHHHHhhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCC----
Confidence               111111111 111123456678888899999999999999999999999999999999999999995433321    


Q ss_pred             HhhhccCCChhHHHHHHHHHHHhhccCChhhhHHHHhhhHHHHHhhcCChhHHHHHHHHHHHHhhhhccHHHHHHHHHHh
Q 000237         1251 ILAIESVRDPQILINNIQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSMAKSMTINVMAAVVENA 1330 (1806)
Q Consensus      1251 ~~~~~~~~~~q~lid~l~vl~~~~p~~~~~l~~~~~~llp~~~~~l~~~~~~vR~~aa~c~a~~~~~~~~~~~~~~~~~~ 1330 (1806)
                                -.++++++|+++++|.++..+|+ +.+++|.++.|++|.+.++||+|||||+++.+..+.++|..+++.+
T Consensus       791 ----------d~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~  859 (1549)
T KOG0392|consen  791 ----------DEFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGF  859 (1549)
T ss_pred             ----------cchhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      17899999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             hcccCCccchhhccchhHHHHHHHhhcCCcccCCcchhhhhhhhccccCCchhhhhhhhhhhhcccccccccCCCCCCCC
Q 000237         1331 IPMLGDMTSVHARQGAGMLISLLVQGLGAELVPYAPLLVVPLLRCMSDCDQSVRQSVTRSFASLVPLLPLARGVSPPTGL 1410 (1806)
Q Consensus      1331 ~p~l~~~~~~~~r~ga~~~~~~~~~~~~~~~~py~~~l~~pll~~msd~~~~vr~~~~~~fa~lv~l~pl~~g~~~p~~l 1410 (1806)
                      +|++++..++..|+|+.|+++++...++..++||.++||+|++|+|||.+++||.++|.+|+.+++++|+++|+++|+|+
T Consensus       860 ~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gl  939 (1549)
T KOG0392|consen  860 LPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGL  939 (1549)
T ss_pred             hhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhcccccccCCCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccc-ChHHHHHHHHHhcCCCCCCCccCcccccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhH
Q 000237         1411 TEGLSR-NAEDAQFLEQLLDNSHIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDI 1489 (1806)
Q Consensus      1411 ~~~l~~-~~~~~~fl~~L~d~~~i~~~~ip~~lk~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~ 1489 (1806)
                      ++++.. ++++++|++||+||+++++|++|..++++||+||++||+||.|+++|++|||||||||||||+|+||++++.+
T Consensus       940 s~eLl~~ke~erkFLeqlldpski~~y~Ip~pI~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~ 1019 (1549)
T KOG0392|consen  940 SKELLASKEEERKFLEQLLDPSKIPEYKIPVPISAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDH 1019 (1549)
T ss_pred             cHHHHHhHHHHHHHHHHhcCcccCCccccccchhHHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHH
Confidence            999999 7999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCccCCCcEEEEeccccHHHHHHHHHHhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhhc
Q 000237         1490 AERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLG 1569 (1806)
Q Consensus      1490 ~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~ 1569 (1806)
                      +.++.....-...|+|||||++|++||+.|+.+|+  |.++|..|.|++.+|..++.+..+++|+||||+.+|+|++++.
T Consensus      1020 y~r~s~~~e~~~~PSLIVCPsTLtGHW~~E~~kf~--pfL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l~ 1097 (1549)
T KOG0392|consen 1020 YKRRSESSEFNRLPSLIVCPSTLTGHWKSEVKKFF--PFLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYLI 1097 (1549)
T ss_pred             HhhcccchhhccCCeEEECCchhhhHHHHHHHHhc--chhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHHH
Confidence            98743322223379999999999999999999999  8899999999999999999999999999999999999999999


Q ss_pred             cccceEEEEcccccccChhhHHHHHHHHhhhcceEEeccCCCCCChhhHHhhhhhhCCCCCCchhHHHHHhccchhhccc
Q 000237         1570 QLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARD 1649 (1806)
Q Consensus      1570 ~i~w~~VILDEaH~IKN~~Sk~skalk~L~A~~RLlLTGTPIqNnl~ELwSLL~FL~Pg~Lgt~~~F~~~f~kPi~~~r~ 1649 (1806)
                      ++.|+|||+||||.|||.+++.++++++|+++||++|||||||||+.||||||+||||||+|++++|.++|++||.++|+
T Consensus      1098 ~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd 1177 (1549)
T KOG0392|consen 1098 KIDWNYCVLDEGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRD 1177 (1549)
T ss_pred             hcccceEEecCcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCChhhHHHHHHHHHHHHHhhcceeeeeehhhhhcCCCCcEEEEEEecCCHHHHHHHHHHHHhHhHHHHhhhhhchhhh
Q 000237         1650 SKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESA 1729 (1806)
Q Consensus      1650 ~~~s~ke~e~g~~ale~L~k~L~PfmLRRtKedVl~dLPpKie~vv~ceLSp~Qr~lYe~~~~s~~~~~i~s~~~~~~~~ 1729 (1806)
                      .+++++++|+|..++++||++|.||||||+|+||++|||||++|+|||+|||.|+++|++|.++ .++.+.+.....+  
T Consensus      1178 ~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~-~k~~~~~~~d~~~-- 1254 (1549)
T KOG0392|consen 1178 PKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKK-AKQCVSSQIDGGE-- 1254 (1549)
T ss_pred             cccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHH-hccccccccccch--
Confidence            9999999999999999999999999999999999999999999999999999999999999887 3333332221110  


Q ss_pred             hccCCCccccccHHHHHHHHHHHHHhhcCccccCCCCCcchHHhhhhhcCCCCCchhhhhhhcccchhcc-----cCCCC
Q 000237         1730 DKGEGNNVSAKASTHVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDIISELHKASSLSQIS-----CSSGD 1804 (1806)
Q Consensus      1730 ~~~~~~~~~~~~~~~Vfq~L~~LRqiCnHP~LV~~~~~pe~~~~~~~~L~~~~~~~l~di~~s~Kl~aL~-----Cgig~ 1804 (1806)
                          ....  ..++||||+|+||||+||||.||+++.||+.. .+++++.. .++++||++||||+.||+     ||||.
T Consensus      1255 ----~S~g--t~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la-~i~~~l~~-~~~~LHdi~hspKl~AL~qLL~eCGig~ 1326 (1549)
T KOG0392|consen 1255 ----ESLG--TDKTHVFQALQYLRKLCNHPALVLTPVHPDLA-AIVSHLAH-FNSSLHDIQHSPKLSALKQLLSECGIGN 1326 (1549)
T ss_pred             ----hccC--cchHHHHHHHHHHHHhcCCcceeeCCCcchHH-HHHHHHHH-hhhhHHHhhhchhHHHHHHHHHHhCCCC
Confidence                0111  12799999999999999999999999999999 99999998 999999999999999996     99996


Q ss_pred             C
Q 000237         1805 N 1805 (1806)
Q Consensus      1805 ~ 1805 (1806)
                      +
T Consensus      1327 ~ 1327 (1549)
T KOG0392|consen 1327 N 1327 (1549)
T ss_pred             C
Confidence            4

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised	Back alignment and domain information

>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]	Back alignment and domain information

>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]	Back alignment and domain information

>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]	Back alignment and domain information

>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]	Back alignment and domain information

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]	Back alignment and domain information

>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e	Back alignment and domain information

>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]	Back alignment and domain information

>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]	Back alignment and domain information

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]	Back alignment and domain information

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>KOG0383 consensus Predicted helicase [General function prediction only]	Back alignment and domain information

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]	Back alignment and domain information

>PRK04914 ATP-dependent helicase HepA; Validated	Back alignment and domain information

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]	Back alignment and domain information

>TIGR00603 rad25 DNA repair helicase rad25	Back alignment and domain information

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3	Back alignment and domain information

>PRK13766 Hef nuclease; Provisional	Back alignment and domain information

>PHA02558 uvsW UvsW helicase; Provisional	Back alignment and domain information

>smart00487 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>cd00046 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional	Back alignment and domain information

>cd00268 DEADc DEAD-box helicases	Back alignment and domain information

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases	Back alignment and domain information

>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family	Back alignment and domain information

>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR00643 recG ATP-dependent DNA helicase RecG	Back alignment and domain information

>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>KOG0354 consensus DEAD-box like helicase [General function prediction only]	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional	Back alignment and domain information

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional	Back alignment and domain information

>TIGR00580 mfd transcription-repair coupling factor (mfd)	Back alignment and domain information

>PTZ00424 helicase 45; Provisional	Back alignment and domain information

>PRK10689 transcription-repair coupling factor; Provisional	Back alignment and domain information

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional	Back alignment and domain information

>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family	Back alignment and domain information

>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1	Back alignment and domain information

>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional	Back alignment and domain information

>PRK01172 ski2-like helicase; Provisional	Back alignment and domain information

>PRK02362 ski2-like helicase; Provisional	Back alignment and domain information

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK13767 ATP-dependent helicase; Provisional	Back alignment and domain information

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK11634 ATP-dependent RNA helicase DeaD; Provisional	Back alignment and domain information

>PTZ00110 helicase; Provisional	Back alignment and domain information

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>COG1204 Superfamily II helicase [General function prediction only]	Back alignment and domain information

>PRK00254 ski2-like helicase; Provisional	Back alignment and domain information

>PRK11057 ATP-dependent DNA helicase RecQ; Provisional	Back alignment and domain information

>TIGR01389 recQ ATP-dependent DNA helicase RecQ	Back alignment and domain information

>PRK09401 reverse gyrase; Reviewed	Back alignment and domain information

>COG4889 Predicted helicase [General function prediction only]	Back alignment and domain information

>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	Back alignment and domain information

>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase	Back alignment and domain information

>PRK05580 primosome assembly protein PriA; Validated	Back alignment and domain information

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type	Back alignment and domain information

>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional	Back alignment and domain information

>TIGR01054 rgy reverse gyrase	Back alignment and domain information

>COG1201 Lhr Lhr-like helicases [General function prediction only]	Back alignment and domain information

>TIGR00595 priA primosomal protein N'	Back alignment and domain information

>TIGR01587 cas3_core CRISPR-associated helicase Cas3	Back alignment and domain information

>TIGR03714 secA2 accessory Sec system translocase SecA2	Back alignment and domain information

>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain	Back alignment and domain information

>PHA02653 RNA helicase NPH-II; Provisional	Back alignment and domain information

>PRK14701 reverse gyrase; Provisional	Back alignment and domain information

>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype	Back alignment and domain information

>PRK09751 putative ATP-dependent helicase Lhr; Provisional	Back alignment and domain information

>COG1110 Reverse gyrase [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK09694 helicase Cas3; Provisional	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>smart00489 DEXDc3 DEAD-like helicases superfamily	Back alignment and domain information

>smart00488 DEXDc2 DEAD-like helicases superfamily	Back alignment and domain information

>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative	Back alignment and domain information

>PRK09200 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	Back alignment and domain information

>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]	Back alignment and domain information

>PRK12899 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4	Back alignment and domain information

>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]	Back alignment and domain information

>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK12898 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB	Back alignment and domain information

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional	Back alignment and domain information

>TIGR00963 secA preprotein translocase, SecA subunit	Back alignment and domain information

>KOG0343 consensus RNA Helicase [RNA processing and modification]	Back alignment and domain information

>TIGR00604 rad3 DNA repair helicase (rad3)	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B	Back alignment and domain information

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]	Back alignment and domain information

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK13104 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []	Back alignment and domain information

>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]	Back alignment and domain information

>PRK10536 hypothetical protein; Provisional	Back alignment and domain information

>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]	Back alignment and domain information

>KOG0347 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]	Back alignment and domain information

>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK12326 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>PRK13103 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane	Back alignment and domain information

>PRK12904 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A	Back alignment and domain information

>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]	Back alignment and domain information

>PRK13107 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG1803 consensus DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK14873 primosome assembly protein PriA; Provisional	Back alignment and domain information

>COG3587 Restriction endonuclease [Defense mechanisms]	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>TIGR00376 DNA helicase, putative	Back alignment and domain information

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA	Back alignment and domain information

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional	Back alignment and domain information

>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]	Back alignment and domain information

>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi	Back alignment and domain information

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional	Back alignment and domain information

>PRK04296 thymidine kinase; Provisional	Back alignment and domain information

>PRK12906 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length	Back alignment and domain information

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]	Back alignment and domain information

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold	Back alignment and domain information

>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR01447 recD exodeoxyribonuclease V, alpha subunit	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG4284 consensus DEAD box protein [Transcription]	Back alignment and domain information

>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]	Back alignment and domain information

>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]	Back alignment and domain information

>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]	Back alignment and domain information

>PRK12902 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR01448 recD_rel helicase, putative, RecD/TraA family	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>PLN03025 replication factor C subunit; Provisional	Back alignment and domain information

>PRK12901 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>smart00382 AAA ATPases associated with a variety of cellular activities	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PRK10875 recD exonuclease V subunit alpha; Provisional	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>KOG0334 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0346 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR02881 spore_V_K stage V sporulation protein K	Back alignment and domain information

>PRK07003 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PRK12900 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PHA02533 17 large terminase protein; Provisional	Back alignment and domain information

>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin	Back alignment and domain information

>TIGR00631 uvrb excinuclease ABC, B subunit	Back alignment and domain information

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]	Back alignment and domain information

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex	Back alignment and domain information

>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3	Back alignment and domain information

>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda	Back alignment and domain information

Homologous Structure Templates