Citrus Sinensis ID: 000239
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1804 | ||||||
| 359473545 | 1788 | PREDICTED: uncharacterized protein LOC10 | 0.916 | 0.924 | 0.485 | 0.0 | |
| 356569203 | 1786 | PREDICTED: uncharacterized protein LOC10 | 0.924 | 0.933 | 0.460 | 0.0 | |
| 356538113 | 1734 | PREDICTED: uncharacterized protein LOC10 | 0.884 | 0.920 | 0.457 | 0.0 | |
| 449435448 | 1832 | PREDICTED: uncharacterized protein LOC10 | 0.950 | 0.935 | 0.435 | 0.0 | |
| 449512985 | 1484 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.788 | 0.958 | 0.455 | 0.0 | |
| 306489519 | 1767 | TGN-localized SYP41-interacting protein | 0.728 | 0.743 | 0.425 | 0.0 | |
| 334182831 | 1732 | uncharacterized protein [Arabidopsis tha | 0.708 | 0.738 | 0.420 | 0.0 | |
| 334182829 | 1807 | uncharacterized protein [Arabidopsis tha | 0.725 | 0.724 | 0.413 | 0.0 | |
| 9743334 | 1864 | F21J9.12 [Arabidopsis thaliana] | 0.727 | 0.704 | 0.413 | 0.0 | |
| 297851134 | 1729 | hypothetical protein ARALYDRAFT_472902 [ | 0.705 | 0.736 | 0.419 | 0.0 |
| >gi|359473545|ref|XP_002267770.2| PREDICTED: uncharacterized protein LOC100257864 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1507 bits (3902), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 870/1792 (48%), Positives = 1184/1792 (66%), Gaps = 139/1792 (7%)
Query: 32 SKDDLFLDASDDLD--DARNADNRESVASNEAEPSYSEENIVVSLKENQNQNHLVETDVG 89
K+D+F+DA ++L D RN D SV +E ++ H+ +
Sbjct: 84 GKEDMFVDAPEELTAYDGRNVDGGRSV------------------QEYSDEEHIAQ---- 121
Query: 90 SGSNHELERLRNLLEKTVRERDSIEKDYKEERENFARELANLRHQLKVLT-------NKD 142
+ L L NL KTV E S+ ++Y+EERE +ELA+L HQLK LT D
Sbjct: 122 ---DGRLLELGNL-GKTVDETGSVPREYEEEREMLGKELASLHHQLKALTVQLQLPGGND 177
Query: 143 GELAEGFSEKEFGESDGKRQVGDAPLHELLSECSQFLRSALEERSKNESAIREINAVLYK 202
G L + E G + + V D PL E+++ECS F+R ALEER + E IRE++A+L
Sbjct: 178 GGLVDFLHTSERGGIEDNKPVFDTPLSEMINECSMFVRGALEERLQTEGTIRELHAILVM 237
Query: 203 KDREIEHLNAKVAEILVSHDVAAAYLNSAAGITSEAQIEKDQYVEVVADRMLSYLAMVVY 262
KD+EIE LN KV ++EK+Q++E +RM + L VV
Sbjct: 238 KDQEIEDLNRKV------------------------ELEKNQHIEGATNRMFASLGSVVD 273
Query: 263 QGELMDSSISGKISHVEQSTYMLIEKYNQMLYEIYQLGQCLSKPDPERRVQEQFETVFAA 322
Q EL D S+SGKI+HVE+ST LIEKY+Q L EI L Q L++ + RVQE T+F A
Sbjct: 274 QEELWDDSVSGKITHVEKSTTQLIEKYSQFLSEIDLLRQLLTETGSDIRVQEGSGTIFFA 333
Query: 323 ARDELLNLKRREEESVENLSHLENENRKLVEQAEKDREMVEAVNAELSKMKTELEHEKMK 382
R ELL LKR+E + VE L+HLE ENRKLV Q E D+ E ++ EL K K ELE EK K
Sbjct: 334 VRAELLELKRKEADFVEKLNHLEGENRKLVGQLENDKVTAEMLSTELGKTKMELEQEKNK 393
Query: 383 CTGTKEKLSLAVTKGKALVQQRDSLKQSLADKTIELEKCLAELQEKSSALQAAELSKEEF 442
C KEKLSLAVTKGKALVQQRD+L+QSLADKT ELEKCL +LQ KSSAL+AAELSKEE
Sbjct: 394 CANAKEKLSLAVTKGKALVQQRDALRQSLADKTSELEKCLVDLQNKSSALEAAELSKEEL 453
Query: 443 IKTENLVASLQETLQQSNLMLEKSEEVLAQIDIPEELQSLDMVERIKWLVSERHELKGIS 502
K+E+L +SLQ+ L N ++EK EEVL+ EELQS D++E++ WL+ ER+ LK +S
Sbjct: 454 AKSESLASSLQQELSWKNAIVEKFEEVLSGTSRNEELQSTDILEKLGWLMDERNVLKTVS 513
Query: 503 LDFYKLKDAVSLIDVPETGSFSDLESRLAWLKESFYQAKDEANVLLDQLNRMKEAARNEI 562
L+F+KL+DA+SLID+PET S SDLES++ WL ESFYQA+DE N L D+++R +EAA+NE+
Sbjct: 514 LEFHKLRDALSLIDLPETISSSDLESQVRWLGESFYQARDEINKLQDEISRTREAAQNEV 573
Query: 563 DRLSASLSAELQEKDYNQKELNDLLCKYEEIVEKANKISLEKDHMVRVLLKESGTSMEDQ 622
D+L+ SL AE+QEKDY QKEL DL +E+I E+ +IS EK HMVR LL SG +M+++
Sbjct: 574 DQLTTSLLAEIQEKDYLQKELEDLTFSHEKITEREQQISSEKHHMVRALLDASGITMDNE 633
Query: 623 DVASQTSSDPTAIISKCIGKIREQTCASSDTSGADSEMLQTMQSLLYVSYQELILCQQIL 682
+ + SSD T +I +C+GKI+EQ+ S +++ AD EM + ++SLLYV QEL LC++IL
Sbjct: 634 EGIHEPSSDVTMLIDRCLGKIKEQSEISVESARADEEMFERIRSLLYVRDQELTLCKEIL 693
Query: 683 EEDALVRLQLNDLSNKLRVASEEFGALKEEKESQQKDLERSEEKSALLREKLSMAVKKGK 742
EE+ +RL++++L++KLR+ S+E ALK EK S QKDL+RSEEK ALLREKLS+AVKKGK
Sbjct: 694 EEEMPMRLEVSNLTDKLRMVSQELVALKAEKSSLQKDLDRSEEKLALLREKLSLAVKKGK 753
Query: 743 GLFQDRENLKLQLDEKNSEIEKLKLNLQEQESTISECRDQINRLSNDLDCIRKMEADLIA 802
GL Q+RENLK LDEKN EIEKLKL LQ+QES + R QI++LS D++ I K+EAD++A
Sbjct: 754 GLVQERENLKQLLDEKNKEIEKLKLELQQQESAFGDYRGQIDKLSADVERIPKLEADVVA 813
Query: 803 MKDERNQFEHFLLESNNMLQKVLETVDRIILPVNSVFKEPLEKVNWIASYINECHDTKTQ 862
+KD+R+Q E FL+ESNN+LQ+V+E++D I++P VF+EP+ KV W+A+Y +EC KT
Sbjct: 814 IKDQRDQLEQFLVESNNILQRVIESIDGIVVPGGLVFEEPVAKVKWLAAYFSECEVAKTH 873
Query: 863 LEQELGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQLADEKRQVEVGKKNVEEE 922
EQEL V++E S L+S+LAE +T+KS EDAL VAE+ I++LA++K+++EVGK NVE+E
Sbjct: 874 AEQELEKVREETSTLSSKLAEAYTTIKSQEDALLVAEENISRLAEDKKEIEVGKTNVEQE 933
Query: 923 LEKAIEEAHIQTSKFAEACASRKSLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQV 982
L+KA+EEA Q SKFAE C++ SLED +++A+ N+S ++ EKE+AQA+ AAA ELE+V
Sbjct: 934 LQKAVEEAAFQASKFAEVCSAHTSLEDALAIAEKNLSAVMNEKEDAQATRAAAETELEKV 993
Query: 983 REEFASQTSKLTEAYKTIKSLEDSLAQVEANVAMLTEQNKEEAQASGAAAVLELEQVREE 1042
++E A Q++++ EAY TIKS+E A L + AQ A V EL +V+EE
Sbjct: 994 KQEVAFQSNRVEEAYATIKSIE-GALAHAEANAALLAEEMNAAQVDRANLVDELRKVKEE 1052
Query: 1043 FVSQTSKLTEAYTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDEAGSQ 1102
SQ +L + YTT+KSLE LS+ E ++A L + GK +E E +L +
Sbjct: 1053 AASQAIELADVYTTVKSLEGTLSKAENSIAELVD-------GKKVVEQENLVLNSRLNAC 1105
Query: 1103 AVKLADAHTTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNACRDELAGTIGSL 1162
+LA H +++S L ND+
Sbjct: 1106 MEELAGTHGSLESRSVELFGHLNDL----------------------------------- 1130
Query: 1163 ESRSVELIGHLNDLQMHMKDERLLSAVKSCFERKIEGLQNMELIVEDIRIGVVGKGS--- 1219
QM +KDE LLS++K FE+K E L++M+ ++++IR ++ K S
Sbjct: 1131 --------------QMLLKDETLLSSLKQTFEKKFESLKDMDSVLKNIRELLIEKVSEQL 1176
Query: 1220 ---AVTEGNSDVTKSFMDDID---NIEMYDNEVTVLDADDITSCFRKTAEGFQMRTKILT 1273
E +S +K F D +D N+ M ++E D +DI+S FRKT + F R IL
Sbjct: 1177 GNNPFVEEDSSASKRFSDGLDGIVNVGMANDEANPADGNDISSYFRKTVDAFHSRNTILA 1236
Query: 1274 DTFEHFSVSIDEFIAALLRKLQTTRDEVVRMTQCMDSLRGKVKNLEGCKQEHEEAMVMLQ 1333
D E FS S+D FIA LL+KLQ TRDEV+ + ++SL+ K+KN+E KQ E + ML+
Sbjct: 1237 DKIEGFSTSMDGFIAVLLQKLQATRDEVIVVLDHVESLKQKMKNMEIQKQAQENTVTMLE 1296
Query: 1334 NDATVLLSACIDATRELQFEVKNNLLELNSVPELENLNRGFSQPESKVDGDDTTDHQKSL 1393
ND +LLSAC DA +ELQ E +NNL +L+SVPELE+ N +SQ + + D +HQ+ +
Sbjct: 1297 NDIGILLSACTDANQELQLEFENNLPKLSSVPELESSN--WSQL-TFMGERDAAEHQQRI 1353
Query: 1394 HGNRYHEAAENLLFSARKAQPLAKLFEMTSTVAASTIQDLQKKLQDTTTAYEKVKDERDL 1453
++Y + AE L + RK Q L ++FE V+A+TI+DLQ +L + T EK +ERD+
Sbjct: 1354 DSSKYAKTAEQLSVATRKVQTLIQMFENARNVSATTIKDLQNELDEMRTTSEKAIEERDI 1413
Query: 1454 HQNKVSKLESDVDALEHSCKELRLKVEDLEAKEEKLKENEAKISLLYDRLSRKEQEAEGL 1513
+Q +VSKLE+D +AL++ C +++L++ED + EEKLK EA+ S +++ KE+E EG
Sbjct: 1414 NQKRVSKLEADAEALQNQCNDMKLRLEDYQEIEEKLKAREAEFSSFSNQVLMKEREVEGS 1473
Query: 1514 FLSPLQIRKLVDKISGIEIPYAESAGDE-EPESSAIVKKLFSIINSATKLPHQIDLLEHG 1572
LS Q++ L DKI I+IP+AES +E EP ++ VKKLF +I+ T+L HQ++LL H
Sbjct: 1474 LLSASQVKALFDKIDEIKIPFAESEAEELEPPNAVYVKKLFHVIDCVTELQHQMNLLSHE 1533
Query: 1573 KQELQSILSTQTAEIEHLKGEVETHLRNKPDLEKMKIEFAEFTFGLEKIVNMLESNEFVV 1632
K+ELQS L+TQ E+EHL+ +K D EK+K + E LEKI+ L N+ V
Sbjct: 1534 KEELQSTLATQVFEMEHLRN-------DKQDSEKLKNDLYELELSLEKIIQKLGGNDLVG 1586
Query: 1633 NQKSSGSKGLLAVLEKQIMTLHSDAENSKSKVQELGNKLLESQKEVDDLTTKVDLLEESL 1692
++KS+G LL VLEK M + ++ENSKSK QELG KLL QK VD+L+TKV LLE+S+
Sbjct: 1587 DKKSAGVMELLTVLEKLAMDIILESENSKSKAQELGAKLLGGQKVVDELSTKVKLLEDSI 1646
Query: 1693 HGRRDQPEIVQERSIFEASSLPTGSEISEVEDVMQGTLGQKTISPVPSAAHTRTMRKGST 1752
H R PE VQER IFEA S+P+GSEISE+EDV G LG T+SPVPSAAH RT+RKGST
Sbjct: 1647 HARASPPEAVQERGIFEAPSVPSGSEISEIEDV--GPLGTNTVSPVPSAAHVRTLRKGST 1704
Query: 1753 DHLTINIDSESARLINSEETDEDKGHVFKSLNTLGLIPRQGKMVADRIDGIW 1804
DHL +NIDSES LI EETDEDKGHVFKSLNT G IP+QGKM+ADRIDGIW
Sbjct: 1705 DHLALNIDSESDHLIK-EETDEDKGHVFKSLNTSGFIPKQGKMIADRIDGIW 1755
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356569203|ref|XP_003552794.1| PREDICTED: uncharacterized protein LOC100800411 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356538113|ref|XP_003537549.1| PREDICTED: uncharacterized protein LOC100799016 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449435448|ref|XP_004135507.1| PREDICTED: uncharacterized protein LOC101218359 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449512985|ref|XP_004164197.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101224868, partial [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|306489519|gb|ADM94222.1| TGN-localized SYP41-interacting protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|334182831|ref|NP_001185085.1| uncharacterized protein [Arabidopsis thaliana] gi|332192412|gb|AEE30533.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|334182829|ref|NP_173855.5| uncharacterized protein [Arabidopsis thaliana] gi|332192411|gb|AEE30532.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|9743334|gb|AAF97958.1|AC000103_8 F21J9.12 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297851134|ref|XP_002893448.1| hypothetical protein ARALYDRAFT_472902 [Arabidopsis lyrata subsp. lyrata] gi|297339290|gb|EFH69707.1| hypothetical protein ARALYDRAFT_472902 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1804 | ||||||
| RGD|1591925 | 2259 | Golga4 "golgin A4" [Rattus nor | 0.896 | 0.716 | 0.207 | 7.5e-30 | |
| UNIPROTKB|Q5U4E6 | 2259 | Golga4 "Golgin subfamily A mem | 0.896 | 0.716 | 0.207 | 7.5e-30 | |
| UNIPROTKB|F1NMQ0 | 2150 | GOLGA4 "Uncharacterized protei | 0.832 | 0.698 | 0.201 | 8.1e-30 | |
| MGI|MGI:1098230 | 2474 | Cenpe "centromere protein E" [ | 0.728 | 0.531 | 0.217 | 3.5e-29 | |
| MGI|MGI:1859646 | 2238 | Golga4 "golgi autoantigen, gol | 0.843 | 0.679 | 0.195 | 7.8e-29 | |
| DICTYBASE|DDB_G0290503 | 1492 | DDB_G0290503 [Dictyostelium di | 0.685 | 0.828 | 0.207 | 9.4e-29 | |
| ZFIN|ZDB-GENE-050208-275 | 2037 | golga4 "golgin A4" [Danio reri | 0.854 | 0.756 | 0.194 | 2.2e-27 | |
| UNIPROTKB|E1C1F2 | 1980 | TRIP11 "Uncharacterized protei | 0.842 | 0.767 | 0.210 | 2.7e-27 | |
| UNIPROTKB|F1RRC2 | 2249 | GOLGA4 "Uncharacterized protei | 0.710 | 0.569 | 0.207 | 4.8e-27 | |
| UNIPROTKB|F1NI68 | 2142 | GOLGA4 "Uncharacterized protei | 0.735 | 0.619 | 0.202 | 4.8e-27 |
| RGD|1591925 Golga4 "golgin A4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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Score = 397 (144.8 bits), Expect = 7.5e-30, Sum P(2) = 7.5e-30
Identities = 374/1802 (20%), Positives = 745/1802 (41%)
Query: 52 NRESVASNEAEPSYSEENIVVSLKENQNQNHLVETDVGSGSNHXXXXXXXXXXKTVRE-- 109
NRE +A AEP++ E + +L ++ +T SG ++
Sbjct: 52 NRELLAGMVAEPAFLSEYTIFALDPSKQPK--TQTGSVSGDTQTFAQKLQLRVPSMESLF 109
Query: 110 RDSIEKD-YKEERENFARELANLRHQLKVLTNKDGELA--EGFSEKEFGESDGKRQVGDA 166
R I++ ++ +E+ R + R L + + D +A + S+ E D
Sbjct: 110 RSPIKESLFRSSKESLVR--TSSRESLNQV-DLDCAVATFDPPSDMESEAEDAPWSSDSL 166
Query: 167 PLHELLSECSQFLRSALEERSKNESAI-------RE---INAVLYK-KDREIEHLNAKVA 215
+LL + RS R K + RE + +L + +D+ + ++ ++
Sbjct: 167 SREQLLQRLRRMERSLSSYRGKYSELVTAFQTLQREKKKLQGILSQSQDKSLRRIS-ELR 225
Query: 216 EILVSHDVAAAYLNSAAGITSEAQIEKDQYVEVVADRMLSYLAMVVYQGELMDSSISGKI 275
E L A +L E EKDQY+ V+ ++ S L + G M + +
Sbjct: 226 EELQMDQQAKRHLQEEFDACVE---EKDQYISVLQTQV-SLLKQRLQNGP-MSVDVPKPL 280
Query: 276 SHVE--QSTYMLIEKYNQMLYEIYQLGQCLSKPDPERRVQEQFETVFAAARDELLN--LK 331
VE + +EK + L E +L + L + V E +A E+L +K
Sbjct: 281 PPVELQAEAHSDMEKLEEKLEE--KLEEKLE--EKLEGVGEAVGGGTSAKTLEMLQQRVK 336
Query: 332 RRE---EESVENLSHLENENRKLVEQAEKDREMVEAVNAELSKMKTELEHEKMKC-TGTK 387
R+E + E + + + L+ + E +E +E EL KMK EK K T +
Sbjct: 337 RQENLLQRCKETIGSHKEQCALLLSEKEALQEQLEERLQELEKMKELHMAEKTKLITQLR 396
Query: 388 EKLSLAVT----KGKALVQQRDSLKQSLADKTIELEKCLAELQEKSSALQAAELSKEEFI 443
+ +L KG + + + + ++L K E+ + + +Q ++ Q EL +E+
Sbjct: 397 DAKNLIEQLEQDKGMVITEAKRQMLETLELKDDEIAQLRSHIQRMTT--QGEEL-REQKE 453
Query: 444 KTENLVASLQETLQQSNLMLEKSEEVLAQIDIPEELQSLDMVERIKWLVSERHELKGISL 503
K+E A+ +E L+++ +K+E+ ++ + + Q + VER E L+ +
Sbjct: 454 KSER--AAFEE-LEKALSTAQKTEDAQRRMKVEMDEQ-IKAVER----AGEEERLR-LQH 504
Query: 504 DFYKLK-DAVSLIDVPETGSFSDLESRLAWLKESFYQAKDEANVLLDQLNR-MKEAARNE 561
+ +++ +AVS+ + +DL+ A E + E + L+ R ++E R
Sbjct: 505 ELSRVRQEAVSMAK-KNSEQRADLQKLHA---EQLASKEQELSQKLESRERELQEQMRMA 560
Query: 562 IDRLSASLSAELQEKDYNQK-ELNDL-LCKYEEIVEKANKIS-LEKDHMV-RVLLKESGT 617
+++ + QEK+ + L +L L K + E NK+ L ++ V R ++E T
Sbjct: 561 LEKSRSEYLKLTQEKEQQESLALEELELQKKAILTESENKLQGLRQEAEVHRTRIRELET 620
Query: 618 SMEDQDVASQTSSDPTAI-ISKCIGKIREQTCASSDTSGADSEMLQTMQSLLYVSYQELI 676
S+E S+T S+ A+ + K + + A ++ + E LQ Q L+ +
Sbjct: 621 SLEKSLQESRTQSERLAVHLEAEKSKHKTELTALAEKHRTELEGLQQQQHSLWTERLQN- 679
Query: 677 LCQQILEEDALVRLQLNDLSNKLRVASEEFGALKEE-KESQQKDLERSEEKSALLRE--- 732
L QQ + A+ L+ K + E+ + ++ +K LE+ ++K L
Sbjct: 680 LSQQ--HQAAVEELREKHQQEKDALLKEKESLFQAHIQDMNEKTLEKLDKKQMELESVSS 737
Query: 733 KLSMAVKKGKGLFQDRENLKLQLDEKNSEIEKLKLNLQEQESTISECRDQINRLSNDLDC 792
+LS A+K L ++ L+ D+ +E LQEQ + +++ +S +
Sbjct: 738 ELSEALKARDQLAEELSVLRGDADQMKQALEA---ELQEQRR---HHQREVDSISGQQEI 791
Query: 793 I-RKMEADLIAMKDERNQFEHFLLESNNMLQK---VLETVDRIILPVNSVFKEPLEKVNW 848
I R+ E A+KDE +Q L E + LQ+ + ++ + ++ L K++
Sbjct: 792 IVRRTEK---ALKDEISQLGGLLKEKDEHLQERQAQVHNLEACLQKSAEELQQALAKLDL 848
Query: 849 IASYINECHDTKTQLEQELGNVKQXXXXXXXXXXXTQSTMKSLEDALSVAEDKITQLADE 908
+ + + H E++L ++Q + +E + + +L +
Sbjct: 849 LQAQQSTTHAQTGAYEEQLAQMQQKVSDLETEKNLLTKQVVEVE---TQKKRVCVELDAQ 905
Query: 909 KRQVEVGKKNVXXXXXXXXXXAHIQTSKFAEACASRKSLEDEMSVAKNNMSVLICEKEEA 968
+ QV+ ++ A +Q S+ + ++ + ++ +N +I + E
Sbjct: 906 RAQVQQLERQRSELEDKVKSLAQLQESQLKNSHVEKEQAQQILTEKEN----VILQMREE 961
Query: 969 QASGAAAVVELEQVREEFASQTSKLT---EAYKT-IKSLEDSLAQVEANVAMLTEQNK-- 1022
QA E+E ++++ S+ ++ E Y+T K+ E + +++ + E K
Sbjct: 962 QAK------EIEILKQKLFSKEESISILHEEYETKFKNQEKRMEKIKQKAKEMQEMKKKL 1015
Query: 1023 --EEAQASGAA--AVLELEQVREEFVSQTSKLTEAYTTIKSLEDALSQVEANVAVLTEQN 1078
+EA+ VLEL Q ++F ++ ++ +A + + D +S++E N E
Sbjct: 1016 LDQEAKLKKELENTVLELSQKEKQFNAKILEMAQANSA--GISDTVSRLEENQRQQIE-- 1071
Query: 1079 NVLQVGKTTLENELQMLKDEAGSQAVKLADAHTT-IKSMEDALLKAKNDISVLEGEKRIS 1137
++ + L++ ++ + + QA +L D H I+ E L + K + ++ EK
Sbjct: 1072 SLTGAHQRELDDLIESWEKKLSQQAEELRDQHEKLIEEKEQELGELKQKVLTVQSEKEEV 1131
Query: 1138 DQEVSALNSKLNACRDELAGTIGSLESRSVELIGHLND--LQMHMKDERLLSAVKSCFER 1195
QEV+ L + LAG G LE +S ++ L+D Q+ + E+L +
Sbjct: 1132 TQEVARLTEAVTGQDVTLAGLQGQLEQKSAAVLA-LSDSHAQLQSQVEKLEVDLGCALNE 1190
Query: 1196 KI---EGLQNMELIVE--DIRIG-VVGKGSAVTEGNSDVTKSFMDDIDNIEMYDNEVTVL 1249
K+ E L ++++ E +R+ + GK A E KS + ++ + D + +
Sbjct: 1191 KLSLQEELAELKMLAEREKLRVSELTGKVQAAEE-ELQSCKS-LHEVSRKSLEDKSLNLR 1248
Query: 1250 DA-DDITSCFRKTAEGFQMRTKILTD--TFEHFSVSIDEFIAALLRKLQTTRDEVVRMTQ 1306
+++ S + E RTK L + T E S D+ A+L +L + + +
Sbjct: 1249 TLLEELASQLDRHCE----RTKALLEAKTNELVCTSRDK-ADAILARLSRCQRHTATVGE 1303
Query: 1307 CMDSLRGKVKNLEGCKQEHEEAMVMLQNDATVLLSACIDATRELQFEVKNNLLELNS-VP 1365
+ G+V LE + E L+N + E + ++K ++ +
Sbjct: 1304 ALLRRMGQVSELEAQLTQLTEEQCTLKNS----FQQVTNQLEEKENQIKTMKADMEGLIA 1359
Query: 1366 ELENLNRGFSQPESKVDGDDT--TDHQKSLHGNRYHEAAENLLFSARKAQPLAKLFEMTS 1423
E E L + Q + ++ T +K L N S +K++ +A L + S
Sbjct: 1360 EKEALQQEGGQQQQVASEKESCITQLKKELSENINAVTLLREELSEKKSE-IASLSKQLS 1418
Query: 1424 TVAASTIQDLQKKLQ-DTTTAYEKVKDERDLH-QNKVSKLESDVDAL-EHSCKELRXXXX 1480
V+A + + + +A K +E++L Q ++ +L S VDAL + L
Sbjct: 1419 DVSAQLENSISPSDKAEAISALSKQHEEQELQLQAQLRELSSKVDALSKEKMSALEQVDH 1478
Query: 1481 XXXXXXXXXXXXXXXI----SLLYDRLSRKEQEAEGLFLSPLQIRKLVDKISGIEIPYAE 1536
S + D ++ + +A+ QIR L + + +
Sbjct: 1479 WSNKFSEWKKKAQPRFAQYQSTIKDLQTQLDLKAKEAGEKDEQIRLLKEDLDQQNERFES 1538
Query: 1537 SAGDEEPESSAIVKKLFSIINSATKLPHQIDLLEHGKQELQSILS-----TQTAEIEHLK 1591
G+ E + + +L + +L D + K+E++S+ +Q + EH
Sbjct: 1539 LKGEMEKKECDLETELKTRTARVVELE---DCITQRKKEVESLNEALRNCSQQRDTEH-S 1594
Query: 1592 GEVETHLRNKPDLEKMKIEFAEFTFGLEKIVNMLESNEFVVN--QKSSGSKGLLAVLEKQ 1649
G V+T R LE++ G EK + E+ E V+ ++ S + L V+ K+
Sbjct: 1595 GLVQTLQR----LEEL---------GQEKDNKVREAEETVLGLRERVSSLEAELRVVRKE 1641
Query: 1650 IMTLHSDAENSKSKVQELGNKL-LESQKEVDDLTTKVDLLEESLHGRRDQPEIVQERSIF 1708
+ ++S ++ +++ L +KL LES +V+ L K E+ L R Q E +
Sbjct: 1642 LDDVNSSVKSRDGELKALEDKLELESAAKVE-LKRKA---EQKLAAIRKQLLSQMEAKVQ 1697
Query: 1709 EASSLPTGSEISEVEDVMQGTLGQKTI-----SPVPSAAHT-RTMRKGSTDHLTINIDSE 1762
+ + T S++SE+ +QG Q I + S+ H R + GS ++ + + E
Sbjct: 1698 QCAK-DTESQLSELRAKLQGREKQIHILEGKLKNLASSPHPERAVVSGSMGNVAASPEQE 1756
Query: 1763 SA 1764
+A
Sbjct: 1757 AA 1758
|
|
| UNIPROTKB|Q5U4E6 Golga4 "Golgin subfamily A member 4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NMQ0 GOLGA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1098230 Cenpe "centromere protein E" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1859646 Golga4 "golgi autoantigen, golgin subfamily a, 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0290503 DDB_G0290503 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-050208-275 golga4 "golgin A4" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1C1F2 TRIP11 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1RRC2 GOLGA4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NI68 GOLGA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00035123001 | SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (1150 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1804 | |||
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 9e-12 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-11 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-10 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 5e-10 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-09 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 7e-09 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-08 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-08 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 7e-08 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-06 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 1e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-06 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 3e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 5e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 6e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 6e-05 | |
| PRK01156 | 895 | PRK01156, PRK01156, chromosome segregation protein | 8e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 9e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-04 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 2e-04 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 2e-04 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 3e-04 | |
| pfam05557 | 722 | pfam05557, MAD, Mitotic checkpoint protein | 3e-04 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 5e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 7e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.001 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.001 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 0.002 | |
| COG1511 | 780 | COG1511, COG1511, Predicted membrane protein [Func | 0.002 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 0.002 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.003 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.003 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 0.003 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 0.003 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.004 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 0.004 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 9e-12
Identities = 122/707 (17%), Positives = 267/707 (37%), Gaps = 54/707 (7%)
Query: 534 KESFYQAKDEANVLLDQLNRMKEAARNEIDRLSASLSAELQEKDYN-QKELNDLLCKYEE 592
E + +E L + E E+ L L EL+ + ++E+ +L +
Sbjct: 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLE-ELRLEVSELEEEIEELQKELYA 292
Query: 593 IVEKANKISLEKDHMVRVL--LKESGTSMEDQDVASQTSSDPTAIISKCIGKIREQTCAS 650
+ + +++ +K + L L+ +E Q ++ D A + + E+
Sbjct: 293 LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE 352
Query: 651 SDTSGADSEMLQTMQSLLYVSYQELILCQQILEEDALVRLQLNDLSNKLRVASEEFGALK 710
+ + L+ +++ L L ++ LE +R ++ L ++ + E L+
Sbjct: 353 LE---SLEAELEELEAELEELESRLEELEEQLET---LRSKVAQLELQIASLNNEIERLE 406
Query: 711 EEKESQQKDLER-SEEKSALLREKLSMAVKKGKG----LFQDRENLKLQLDEKNSEIEKL 765
E + ER +E LL++ +K+ + L ++ E L+ +L+ +E+L
Sbjct: 407 ARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEEL 466
Query: 766 KLNLQEQESTISECRDQINRLSNDLDCIRKMEADL-------IAMKDERNQFEHF----- 813
+ L+E E + ++ +L LD + +++ +L A+ ++
Sbjct: 467 REELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLS 526
Query: 814 -LLESNNMLQKVLETV-------------DRIILPVNSVFKEPLEKVNWIA-SYINECHD 858
L+ + + +E + + + + L +V ++ I
Sbjct: 527 ELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEI 586
Query: 859 TKTQLE--QELGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQLADEKRQVEVGK 916
E + + A L + + + L + V +D + + +++ G
Sbjct: 587 QGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDD-LDNALELAKKLRPGY 645
Query: 917 KNVEEELEKAIEEAHIQTSKFAEACASRKSLEDEMSVAKNNMSVLICEKEEAQASGAAAV 976
+ V + + + + T A+ +S E+ + + L + E + + A
Sbjct: 646 RIVTLDGDL-VRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELR 704
Query: 977 VELEQVREEFASQTSKLTEAYKTIKSLEDSLAQVEANVAMLTEQNKEEAQASGAAAVLEL 1036
ELE++ EE +L E + I +L LA++EA V L E+ + ++ EL
Sbjct: 705 KELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSK--------EL 756
Query: 1037 EQVREEFVSQTSKLTEAYTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLK 1096
++ E +L EA + E + ++EA + L E+ L+ L EL +L
Sbjct: 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLN 816
Query: 1097 DEAGSQAVKLADAHTTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNACRDELA 1156
+EA + +L I + E L + I L + E+ L + EL
Sbjct: 817 EEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELE 876
Query: 1157 GTIGSLESRSVELIGHLNDLQMHMKDERLLSAVKSCFERKIEGLQNM 1203
+ S L ++L+ ++ R L + +S R++E L+
Sbjct: 877 ALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREK 923
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224428 COG1511, COG1511, Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1804 | |||
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 100.0 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 100.0 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 99.97 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 99.96 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.96 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.92 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 99.92 | |
| KOG0964 | 1200 | consensus Structural maintenance of chromosome pro | 99.91 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.9 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 99.88 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.87 | |
| KOG0933 | 1174 | consensus Structural maintenance of chromosome pro | 99.86 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 99.83 | |
| KOG0962 | 1294 | consensus DNA repair protein RAD50, ABC-type ATPas | 99.81 | |
| KOG0964 | 1200 | consensus Structural maintenance of chromosome pro | 99.79 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.78 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 99.78 | |
| KOG0018 | 1141 | consensus Structural maintenance of chromosome pro | 99.75 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.75 | |
| KOG0933 | 1174 | consensus Structural maintenance of chromosome pro | 99.74 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 99.67 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.64 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 99.6 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 99.53 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.52 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 99.48 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 99.45 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 99.44 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 99.37 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.34 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 99.04 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 98.9 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 98.89 | |
| KOG0994 | 1758 | consensus Extracellular matrix glycoprotein Lamini | 98.8 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 98.8 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 98.61 | |
| KOG4643 | 1195 | consensus Uncharacterized coiled-coil protein [Fun | 98.59 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 98.59 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 98.53 | |
| KOG0018 | 1141 | consensus Structural maintenance of chromosome pro | 98.52 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 98.47 | |
| KOG0976 | 1265 | consensus Rho/Rac1-interacting serine/threonine ki | 98.45 | |
| KOG0994 | 1758 | consensus Extracellular matrix glycoprotein Lamini | 98.43 | |
| KOG4643 | 1195 | consensus Uncharacterized coiled-coil protein [Fun | 98.34 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 98.31 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.3 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 98.16 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 98.14 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 98.12 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 98.12 | |
| KOG0962 | 1294 | consensus DNA repair protein RAD50, ABC-type ATPas | 98.11 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 98.09 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 98.08 | |
| KOG4673 | 961 | consensus Transcription factor TMF, TATA element m | 97.95 | |
| PF05483 | 786 | SCP-1: Synaptonemal complex protein 1 (SCP-1); Int | 97.87 | |
| KOG0976 | 1265 | consensus Rho/Rac1-interacting serine/threonine ki | 97.81 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 97.64 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 97.63 | |
| PF05483 | 786 | SCP-1: Synaptonemal complex protein 1 (SCP-1); Int | 97.59 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 97.58 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 97.54 | |
| PF05622 | 713 | HOOK: HOOK protein; InterPro: IPR008636 This famil | 97.45 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 97.41 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 97.37 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 97.3 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 97.18 | |
| PF05622 | 713 | HOOK: HOOK protein; InterPro: IPR008636 This famil | 97.18 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 97.17 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 97.17 | |
| COG1340 | 294 | Uncharacterized archaeal coiled-coil protein [Func | 97.17 | |
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 97.13 | |
| PF14915 | 305 | CCDC144C: CCDC144C protein coiled-coil region | 97.05 | |
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 97.01 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 97.01 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 96.96 | |
| KOG1003 | 205 | consensus Actin filament-coating protein tropomyos | 96.96 | |
| PRK11637 | 428 | AmiB activator; Provisional | 96.83 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 96.75 | |
| KOG0995 | 581 | consensus Centromere-associated protein HEC1 [Cell | 96.72 | |
| PF09728 | 309 | Taxilin: Myosin-like coiled-coil protein; InterPro | 96.63 | |
| PF14915 | 305 | CCDC144C: CCDC144C protein coiled-coil region | 96.59 | |
| PF05911 | 769 | DUF869: Plant protein of unknown function (DUF869) | 96.56 | |
| KOG0995 | 581 | consensus Centromere-associated protein HEC1 [Cell | 96.55 | |
| KOG0971 | 1243 | consensus Microtubule-associated protein dynactin | 96.55 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 96.54 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 96.5 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 96.4 | |
| PF14662 | 193 | CCDC155: Coiled-coil region of CCDC155 | 96.27 | |
| PF13514 | 1111 | AAA_27: AAA domain | 96.27 | |
| COG5185 | 622 | HEC1 Protein involved in chromosome segregation, i | 96.19 | |
| COG4372 | 499 | Uncharacterized protein conserved in bacteria with | 96.19 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 96.12 | |
| KOG4673 | 961 | consensus Transcription factor TMF, TATA element m | 96.04 | |
| PF09728 | 309 | Taxilin: Myosin-like coiled-coil protein; InterPro | 96.0 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 95.88 | |
| PF14662 | 193 | CCDC155: Coiled-coil region of CCDC155 | 95.82 | |
| COG4372 | 499 | Uncharacterized protein conserved in bacteria with | 95.57 | |
| PRK09039 | 343 | hypothetical protein; Validated | 95.56 | |
| PF05010 | 207 | TACC: Transforming acidic coiled-coil-containing p | 95.24 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 95.15 | |
| KOG0963 | 629 | consensus Transcription factor/CCAAT displacement | 94.79 | |
| PF13514 | 1111 | AAA_27: AAA domain | 94.64 | |
| KOG4593 | 716 | consensus Mitotic checkpoint protein MAD1 [Cell cy | 94.46 | |
| PF15619 | 194 | Lebercilin: Ciliary protein causing Leber congenit | 94.32 | |
| COG5185 | 622 | HEC1 Protein involved in chromosome segregation, i | 94.16 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 94.13 | |
| PF06008 | 264 | Laminin_I: Laminin Domain I; InterPro: IPR009254 L | 94.1 | |
| KOG0980 | 980 | consensus Actin-binding protein SLA2/Huntingtin-in | 93.89 | |
| PF07111 | 739 | HCR: Alpha helical coiled-coil rod protein (HCR); | 93.8 | |
| COG4477 | 570 | EzrA Negative regulator of septation ring formatio | 93.53 | |
| PF10473 | 140 | CENP-F_leu_zip: Leucine-rich repeats of kinetochor | 93.04 | |
| KOG0963 | 629 | consensus Transcription factor/CCAAT displacement | 93.0 | |
| KOG0999 | 772 | consensus Microtubule-associated protein Bicaudal- | 92.17 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 92.16 | |
| PF09789 | 319 | DUF2353: Uncharacterized coiled-coil protein (DUF2 | 91.43 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 91.11 | |
| KOG0971 | 1243 | consensus Microtubule-associated protein dynactin | 90.84 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 90.69 | |
| COG3883 | 265 | Uncharacterized protein conserved in bacteria [Fun | 89.67 | |
| PF10481 | 307 | CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 | 89.61 | |
| PF05911 | 769 | DUF869: Plant protein of unknown function (DUF869) | 89.59 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 89.44 | |
| KOG4593 | 716 | consensus Mitotic checkpoint protein MAD1 [Cell cy | 89.13 | |
| COG4477 | 570 | EzrA Negative regulator of septation ring formatio | 89.09 | |
| PF10481 | 307 | CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 | 89.01 | |
| PF13851 | 201 | GAS: Growth-arrest specific micro-tubule binding | 87.95 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 87.92 | |
| PF08614 | 194 | ATG16: Autophagy protein 16 (ATG16); InterPro: IPR | 87.87 | |
| TIGR03007 | 498 | pepcterm_ChnLen polysaccharide chain length determ | 87.72 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 86.94 | |
| TIGR01843 | 423 | type_I_hlyD type I secretion membrane fusion prote | 85.48 | |
| PF05010 | 207 | TACC: Transforming acidic coiled-coil-containing p | 85.18 | |
| PF12325 | 120 | TMF_TATA_bd: TATA element modulatory factor 1 TATA | 84.98 | |
| PF08614 | 194 | ATG16: Autophagy protein 16 (ATG16); InterPro: IPR | 84.92 | |
| TIGR03007 | 498 | pepcterm_ChnLen polysaccharide chain length determ | 84.41 | |
| PF09755 | 310 | DUF2046: Uncharacterized conserved protein H4 (DUF | 84.37 | |
| TIGR01005 | 754 | eps_transp_fam exopolysaccharide transport protein | 83.34 | |
| PF11559 | 151 | ADIP: Afadin- and alpha -actinin-Binding; InterPro | 83.24 | |
| PF15066 | 527 | CAGE1: Cancer-associated gene protein 1 family | 82.96 | |
| PF05384 | 159 | DegS: Sensor protein DegS; InterPro: IPR008595 Thi | 82.83 | |
| PF07111 | 739 | HCR: Alpha helical coiled-coil rod protein (HCR); | 82.07 | |
| PF10498 | 359 | IFT57: Intra-flagellar transport protein 57 ; Inte | 81.33 | |
| KOG1853 | 333 | consensus LIS1-interacting protein NUDE [Cytoskele | 80.94 | |
| PF12325 | 120 | TMF_TATA_bd: TATA element modulatory factor 1 TATA | 80.86 | |
| KOG4809 | 654 | consensus Rab6 GTPase-interacting protein involved | 80.26 | |
| PF15066 | 527 | CAGE1: Cancer-associated gene protein 1 family | 80.07 |
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-29 Score=313.28 Aligned_cols=653 Identities=17% Similarity=0.212 Sum_probs=425.3
Q ss_pred HhhhhhHHHHHHHHhhhhhhhcccCcc-----cCc-----ccccchhhhHh--hHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 000239 240 IEKDQYVEVVADRMLSYLAMVVYQGEL-----MDS-----SISGKISHVEQ--STYMLIEKYNQMLYEIYQLGQCLSKPD 307 (1804)
Q Consensus 240 ~~~~~~~e~~~~~~l~~~~nvv~QGdv-----m~~-----~~~~~i~~lE~--~~~~~~ek~~~~~~eie~l~~~l~~~~ 307 (1804)
+-++.|||+.||||| ||||+| |+| ++.|.|+|||| ||+.|.+.+.+...++..|...+.+..
T Consensus 214 lLk~~gIDleHNRFL------ILQGEVE~IA~MKPk~~~e~d~GmLEYLEDIIGT~ry~~~I~~~~~rv~~L~e~~sek~ 287 (1293)
T KOG0996|consen 214 LLKSHGIDLEHNRFL------ILQGEVEQIAMMKPKAQTENDEGMLEYLEDIIGTNRYKEPIEELMRRVERLNEDRSEKE 287 (1293)
T ss_pred HHHhcCCCCccceee------eehhhHHHHHhcCCCCCCCCcchHHHHHHHHhcccccchhHHHHHHHHHhhhHHHHHHH
Confidence 456999999999999 999999 765 48999999999 999999999999999999999988877
Q ss_pred CchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 000239 308 PERRVQEQFETVFAAARDELLNLKRREEESVENLSHLENENRKLVEQAEKDREMVEAVNAELSKMKTELEHEKMKCTGTK 387 (1804)
Q Consensus 308 ~~~~~~ee~a~~~~~l~~el~~lk~~~~~~~e~l~~l~~E~~~l~~el~~~~~~l~~l~~el~~~~~el~~l~~~l~~~~ 387 (1804)
++++.+..++..++.- ..+.+.+|.++++.+...-...+-.+....+.+...+..+..+.+.+....
T Consensus 288 ----------~~~k~~e~ek~~lE~~---k~~al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ 354 (1293)
T KOG0996|consen 288 ----------NRVKLVEKEKKALEGP---KNEALEFLKKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDEN 354 (1293)
T ss_pred ----------HHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 7778888876555543 456999999999999999888889998989999999999999999998888
Q ss_pred HHhhHH-HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHhH---HH
Q 000239 388 EKLSLA-VTKGKALVQQRDSLKQSLADKTIELEKCLAELQEKSSALQAAE-LSKEEFIKTENLVASLQETLQQSN---LM 462 (1804)
Q Consensus 388 eki~~~-~~k~~~l~~~~~~lk~eiee~~~ele~~~~eie~~~~~l~~~e-~l~~el~~~k~~~~~l~~~~~~k~---~~ 462 (1804)
+++... ..........+..++......++....|..++..+..+....+ .+++-...+++..+.++....++. .+
T Consensus 355 ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~ 434 (1293)
T KOG0996|consen 355 EKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKA 434 (1293)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhC
Confidence 888833 3334555556666777777777777777777777665555544 233333333333333333322222 22
Q ss_pred -------HHHHHHHHhcCCcchhhhhhhHHHHHHHHH----HHHHHhhhhhhhHhhhHHHhhhcCCCCCCcccchHHHHH
Q 000239 463 -------LEKSEEVLAQIDIPEELQSLDMVERIKWLV----SERHELKGISLDFYKLKDAVSLIDVPETGSFSDLESRLA 531 (1804)
Q Consensus 463 -------l~~~e~~l~~~~~~~~~~~~e~~ek~~~L~----e~r~el~~~~~e~~~l~e~~~~~~~~~~~~~~ele~~i~ 531 (1804)
..++...+..+..........+.+-+..+. ..+.++.....++.+|...+..... .....++++.
T Consensus 435 pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~----e~~vaesel~ 510 (1293)
T KOG0996|consen 435 PEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARS----ELDVAESELD 510 (1293)
T ss_pred chhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 222222222222111111222222222222 1144555566667776666664433 2334455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Q 000239 532 WLKESFYQAKDEANVLLDQLNRM-----------------KEAARNEIDRLSASLSAELQEKDYNQKELNDLLCKYEEIV 594 (1804)
Q Consensus 532 ~L~~~~~~~~~e~~~l~~el~~~-----------------~~~~~~~~~~l~~~l~~~~~e~e~L~~el~~l~~e~~e~~ 594 (1804)
.|....+.+...+..++..+..+ +.++..++.+.+..+..+..+...+...+..++++..+++
T Consensus 511 ~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~k 590 (1293)
T KOG0996|consen 511 ILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAK 590 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555444332 3334445555666666666666666666668888888888
Q ss_pred HHhchhhhhhhHHHHHHHHHh----------------CCCCccchhh--------hccCCChhhHHHHHHHHHHhh----
Q 000239 595 EKANKISLEKDHMVRVLLKES----------------GTSMEDQDVA--------SQTSSDPTAIISKCIGKIREQ---- 646 (1804)
Q Consensus 595 ~~~~~~~~~~~~l~~~l~el~----------------~~~i~~y~~A--------~~~~vd~~~~a~~~~~~Lk~~---- 646 (1804)
..++..++ .++++..|.++. ..+ .+|++| ++|||||.++|+.||+||+.+
T Consensus 591 s~~~~~~s-~~kVl~al~r~kesG~i~Gf~GRLGDLg~Id-~kYDvAIsTac~~LdyiVVdt~e~aq~cI~fl~~~nLgr 668 (1293)
T KOG0996|consen 591 SSLSSSRS-RNKVLDALMRLKESGRIPGFYGRLGDLGAID-EKYDVAISTACARLDYIVVDTIETAQECINFLKKNNLGR 668 (1293)
T ss_pred HHHHhhhh-hhHHHHHHHHHHHcCCCCccccccccccccc-hHHHHHHHHhccccceEEeccHHHHHHHHHHHHHcCCCc
Confidence 87777555 677776666554 222 249988 888899999999999999997
Q ss_pred cc--CCCC--------CCCcChHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Q 000239 647 TC--ASSD--------TSGADSEMLQTMQSLLYVSYQELILCQQILEEDALVRLQLNDLS-------------------- 696 (1804)
Q Consensus 647 ~~--~l~~--------~~~~~~e~~~~l~~~l~~l~~E~~~l~~~le~~~~~~~~~~~l~-------------------- 696 (1804)
+| +|++ ..+..|+-.++|+|++.+.+.++..+||++.+++++..++.++.
T Consensus 669 aTFi~LDki~~~~~~l~~i~tpenvPRLfDLv~~~d~~~r~aFYfaLrdtLV~d~LeQAtRiaygk~rr~RVvTL~G~lI 748 (1293)
T KOG0996|consen 669 ATFIILDKIKDHQKKLAPITTPENVPRLFDLVKCKDEKFRPAFYFALRDTLVADNLEQATRIAYGKDRRWRVVTLDGSLI 748 (1293)
T ss_pred eeEEehHhhhhhhhccCCCCCCCCcchHhhhhccCCHHHHHHHHHHHhhhhhhcCHHHHHHHhhcCCCceEEEEecceee
Confidence 23 5553 22666788999999999999999999999999999988888873
Q ss_pred -------------HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Q 000239 697 -------------NKLRVASEEF---GALKEEKESQQKDLERSEEKSALLREKLSMAVKKGKGLFQDRENLKLQLDEKNS 760 (1804)
Q Consensus 697 -------------~~~~~l~~e~---~~l~~e~~~l~~el~~~e~k~~~l~e~l~~~~~k~k~l~~e~~~l~~~ieel~~ 760 (1804)
..+ .....+ .........+...+.........+.+.+.........+......++..+..+..
T Consensus 749 e~SGtmtGGG~~v~~g-~mg~~~~~t~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~ 827 (1293)
T KOG0996|consen 749 EKSGTMTGGGKKVKGG-RMGTSIRVTGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTA 827 (1293)
T ss_pred cccccccCCCCcCCCC-CCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHH
Confidence 000 000001 112223334444444444444444444333332222222333445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Q 000239 761 EIEKLKLNLQEQESTISECRDQINRLSNDLDCIRKMEADLIAMKDERNQFEHFLLESNNMLQKVLETVDRIILPVNSVFK 840 (1804)
Q Consensus 761 ele~l~~el~~~e~~~~el~~~l~~l~~~~e~~~~Le~ei~~l~~~~~e~e~~L~e~e~~l~~l~~~i~el~~~~~~~~~ 840 (1804)
++..+...+..++.++.+++..+........+++.++..|..++.+++++...-.. +..+..+++.|..++.
T Consensus 828 ~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~------- 899 (1293)
T KOG0996|consen 828 SVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGG------- 899 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhc-------
Confidence 55555556666666666666666555666777888888899999999888644443 6788889988888875
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 841 EPLEKVNWIASYINECHDTKTQLEQELGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQLADEKRQVEVGKKNVE 920 (1804)
Q Consensus 841 e~~~k~~~l~~~~~ele~~l~~le~ei~~l~~~l~~l~~el~el~~e~~~le~el~~le~~i~~L~~e~~~le~~~~ele 920 (1804)
..+......+..+..++..+..+|..+...+......+.+++..+.+++.++...+..+..|......+.....+++
T Consensus 900 ---e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~ 976 (1293)
T KOG0996|consen 900 ---EKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELE 976 (1293)
T ss_pred ---hhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 23344445666666666666666777777777666667777777777777777666666666666665555555555
Q ss_pred HHHHHHHHH
Q 000239 921 EELEKAIEE 929 (1804)
Q Consensus 921 ~~l~~~~~e 929 (1804)
..+.....-
T Consensus 977 ~~~~e~~~~ 985 (1293)
T KOG0996|consen 977 KEYKEAEES 985 (1293)
T ss_pred HHHHHHHHH
Confidence 444444333
|
|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] | Back alignment and domain information |
|---|
| >KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
| >KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
| >KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] | Back alignment and domain information |
|---|
| >PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex | Back alignment and domain information |
|---|
| >KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex | Back alignment and domain information |
|---|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms | Back alignment and domain information |
|---|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >PF14915 CCDC144C: CCDC144C protein coiled-coil region | Back alignment and domain information |
|---|
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed | Back alignment and domain information |
|---|
| >PF14915 CCDC144C: CCDC144C protein coiled-coil region | Back alignment and domain information |
|---|
| >PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants | Back alignment and domain information |
|---|
| >KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF14662 CCDC155: Coiled-coil region of CCDC155 | Back alignment and domain information |
|---|
| >PF13514 AAA_27: AAA domain | Back alignment and domain information |
|---|
| >COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] | Back alignment and domain information |
|---|
| >PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF14662 CCDC155: Coiled-coil region of CCDC155 | Back alignment and domain information |
|---|
| >COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules | Back alignment and domain information |
|---|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
| >KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] | Back alignment and domain information |
|---|
| >PF13514 AAA_27: AAA domain | Back alignment and domain information |
|---|
| >KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease | Back alignment and domain information |
|---|
| >COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells | Back alignment and domain information |
|---|
| >KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins | Back alignment and domain information |
|---|
| >COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] | Back alignment and domain information |
|---|
| >KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] | Back alignment and domain information |
|---|
| >KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function | Back alignment and domain information |
|---|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
| >KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >COG3883 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] | Back alignment and domain information |
|---|
| >PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants | Back alignment and domain information |
|---|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
| >KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] | Back alignment and domain information |
|---|
| >PF13851 GAS: Growth-arrest specific micro-tubule binding | Back alignment and domain information |
|---|
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
| >PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family | Back alignment and domain information |
|---|
| >PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules | Back alignment and domain information |
|---|
| >PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] | Back alignment and domain information |
|---|
| >PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain | Back alignment and domain information |
|---|
| >TIGR01005 eps_transp_fam exopolysaccharide transport protein family | Back alignment and domain information |
|---|
| >PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch | Back alignment and domain information |
|---|
| >PF15066 CAGE1: Cancer-associated gene protein 1 family | Back alignment and domain information |
|---|
| >PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins | Back alignment and domain information |
|---|
| >PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins | Back alignment and domain information |
|---|
| >PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms | Back alignment and domain information |
|---|
| >KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] | Back alignment and domain information |
|---|
| >KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF15066 CAGE1: Cancer-associated gene protein 1 family | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 95.3 bits (236), Expect = 1e-19
Identities = 114/727 (15%), Positives = 217/727 (29%), Gaps = 224/727 (30%)
Query: 78 QNQNHLVETDVGSGSNHELERLRNLLEKTVRERD--SIEKDY------KEERENFARE-- 127
+ +H ++ + G + L + V D ++ D KEE ++
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ-DMPKSILSKEEIDHIIMSKD 59
Query: 128 -LANLRHQLKVLTNKDGELAEGFSEKEFGESDGKRQVGDAPLHELLSECSQFLRSALEER 186
++ L +K E+ + F E E+L +FL S ++
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVE------------------EVLRINYKFLMSPIKTE 101
Query: 187 SKNESAIREINAVLYKKDREIEHLNAKVAEILVSHDV----AAAYLNSAAGITSEAQIEK 242
+ S + +Y + R+ + ++ ++V L A ++
Sbjct: 102 QRQPSMMTR----MYIEQRDRLY---NDNQVFAKYNVSRLQPYLKLRQAL-----LELRP 149
Query: 243 DQYVEVVADRML----SYLAMVVYQGELMDSSISGKISHVEQSTYMLIEKYNQMLYEIY- 297
+ V + +L +++A+ V + +M ++I+
Sbjct: 150 AKNVLIDG--VLGSGKTWVALDVCL----SYKVQ-----------------CKMDFKIFW 186
Query: 298 -QLGQCLSKPDPERRVQE---QFETVFAAARDELLNLKRREEESVENLSHL---ENENRK 350
L C S +Q+ Q + + + D N+K R L L +
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 351 L-----VEQAEKDREMVEAVNAELSKMKTELEHEKMKCTGTKEKLSLAVTKGKALVQQRD 405
L V ++ + A N + C K L+ R
Sbjct: 247 LLVLLNV----QNAKAWNAFN--------------LSC--------------KILLTTRF 274
Query: 406 SLKQSLADKTIELEKCLAELQEKSSALQAAELSKEEFIK-TENLVASLQETLQQSNLMLE 464
+ D L S L E K +K + L + +N
Sbjct: 275 K---QVTDFLSAATTTHISLDHHSMTLTPDE-VKSLLLKYLDCRPQDLPREVLTTNPR-- 328
Query: 465 KSEEVLAQIDIPEELQSLDMVERIK-WLVSERHELKGI---SLD----------FYKL-- 508
L+ I E ++ D + W +L I SL+ F +L
Sbjct: 329 ----RLSI--IAESIR--DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 509 --KDAVSLIDVPETGSFSDLESRLAWLKESFYQAKDEANVLLDQLNRMKEAARNEIDRLS 566
A +P L S + W K + V++++L++ + +
Sbjct: 381 FPPSA----HIPT-----ILLSLI-WFDVI----KSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 567 A--SLSAELQEKDYNQKELND-LLCKYEEI--VEKANKISLEKD---------HMVRVLL 612
+ S+ EL+ K N+ L+ ++ Y + + I D H+ +
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486
Query: 613 KESGTSMED--QDVASQTSSDPTAIISKCIGKIREQTCASSDTSGADSEMLQTMQSL-LY 669
E T D + + KIR + A A +L T+Q L Y
Sbjct: 487 PERMTLFRMVFLDF---------RFLEQ---KIRHDSTA----WNASGSILNTLQQLKFY 530
Query: 670 VSYQELILCQQILEEDALVRLQLNDL----------------SNKLRVA-SEEFGALKEE 712
Y I + D +N + ++ LR+A E A+ EE
Sbjct: 531 KPY--------ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
Query: 713 KESQ-QK 718
Q Q+
Sbjct: 583 AHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00