Citrus Sinensis ID: 000256

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630------1640------1650------1660------1670------1680------1690------1700------1710------1720------1730------1740------1750------1760------1770------

MWQLMPETDGSSHHLLHVPLKDSPLSDCGGLCGDLDVQIELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPVNERKVIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGISSSGEAFANSSSLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEEISLMYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSESHGQWDSQSHKGSIVYSLLKFCSEKNEAASKDDISIDGDTIKTTSSNHLACIQAKDRSSGRIEIASCVRVAEVAQIRISNRYPLNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQLYPQNPVLHVGGSLDFSVEGFSDQVSGHWFSDNESVVHVHMPSGKAEAVGIGSTKVFFECPSMKLQTTVTVLSKNIVSIDAPKEVLTNIPYPTKGYTFAVRFGDTHKLKALENKAISYDCEADPPFVGYAKPWMDLDTGNLYCLFFPYSPEHLLRSVPKSKDTSPFISVSVNASLREAHRISGSASASALFVGGFSILEMDKSSLQLNLTSDSNKTTITILGNTGVEIHWQNQDLLKISPVHKEDIGIGGHAQYEVSVLRTKKFKDKIIFTLPANGQRVEVDVNFEPGQREESNRIFASFIGFFAVFSLIVVFSIAILDGRKRSTRSQPSVSPATPYATAPGTPEHSIPTVSNEQSPRTPQPFVDYVRRTIDETPNYRREARRRFNVQNTF

ccEEcccccccccEEEEEEccccccccccccccccHHHHHHHHccccccEEEEEEEEEEEEEEEEEEccccccccccEEEEEEEEEEEEEccccEEEEEccEEEEEEEEEEccccEEEEcccccEEEEEccccEEEEEccccEEEEEEEccEEEEEEEccccccccEEEEEEEccccEEEEEEEccccccccccEEEcccccEEEEEEcEEEEEEEEEEcccccccEEEEEcccEEEEEcccccEEEEEEccccEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEccEEccEEEEEEEEEEEEEEEEEEEEccccccccEEEccccccccEEEEEEEEcccccccccEEEEEcccEEEEEcccEEEEEccccEEEEEEEEccccccEEEEEEEEEcccEEEEEEcEEEEEEcccEEEEEEEEEEccccEEEEEEcccEEEEEEEccccEEEEcccccccccccccccccccccccccEEEEEEEEEEEEEEEEEEEEEEEcccccccccccEEEEEEEEEEEEcccccccccccccccccEEEccccccEEEcccccEEEEEEEcEEEEEEEccccccccccccEEEEEEEccccccccccEEEEEEEcccccEEEEEEEcccEEEEEEEEccccccccccccEEEEEEEEEEEcccEEEEEEccccccccccccccccccccccEEEEEEEEEcccEEEEEEEEEcccccEEEcccccEEEEEEEcccccEEEEccccccccccccEEEEEEEEEEEEEEEEEEEEEEEccccccccccccccccccEEEEEEEEEEEEEEEcccEEEEEEccccEEEEEEEEEEEEEEEEEcccccEEEEEccccEEEEEEEEEEcccEEEEEEEEEccccccccEEEEEEEEcEEEEEEEEcEEEEEEEEEEEEEEEEEccEEEEEcccccccccccEEEEEEEEEEEEEEEEEEEEEEEEEccccEEEEEEEEEEEccccEEEccEEEEEcccEEEEEEEEcccccEEEEEEEccccEEEEEcccEEEEEEEEEEEEEEEEEEEccEEEEEEEEEEEEEEEEEEEEEEccccEEEEcEEEEEEEccccccccccccccEEEEEEEccccEEEEEccccccccccccccccccEEEEccccccccccEEEEEEEEEccEEEEEEEEEEccccccccccEEEEEEEEEEEEEccccccccccEEccccccccccccccccccccccccccccEEEEEEEEEcccccccEEEcccEEEccccEEEEccccEEEEEEEEcccccEEEEEEEEEEEEEEEEEEcccccEEEEEccccEEEEEEEEEccccccccccccEEEEEEEEccccEEEEEEEEcccEEEEEEEEEEEEEEEEEEcccccccEEEEEEEEEEEEEEcccEEEEEcEEEEEEEEEccccccEEEcccccEEEEEccccEEEEEEEcEEEEEEEcccEEEEEEEEEEEEEEEEEcccccEEEccccccccEEEEEEEcccccccccccccEEEEEEEccccEEEEccEEEcccccEEEEEccccccccccccccccccccEEEEEEEEEEEcccEEcccEEEEEEEEEEEEEEEEcccccEEEEcccccEEEEEEEcccccEEEEEcccEEEEEccccccccccEEEEEEEEEEEccccccEEEEEEcccccEEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc

cccEccccccccccEEEEEcccccccccccccccHHHHHHHHHccccccEEEEEEEcccEEEEEEEEccccHccccHHEEEEEHHHEEEcccccEEEEcccEEEEEEEEEEcccEEEEEcccccEEEEEccccEEEEcccccEEEEEEcccEEEEEEEccccccccccEEEEEcccEEEEEEEEEccccccccccEEcccccEEEEEEccEEEEEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEccccEEEcccccEEEEEEEcccEEEEEEEEEEEEEcccccccEEEEEEEEEEEEEEEEEccccccccEEEEEccccccEEEEEEEEEccccccccEEEEccccEEEEEEccEEEEEccccEEEEEEEEccccccccEEEEEEEccccEEEEccccEEEEEccEEEEEEEEEEccccccEcccccccEEEEEccccccEEEEEcccccEEEcccccccccccccccccEEEEEEEcccEEEEEEEEEcccEEEcccccccEEEEEEEEEEEEccEEEEcccccccccEEEEHHHHcccccccccccEEEEEccccEEEEEEcccccccccccHccccHHHEcEcccccccEEEEEEccccccEEEEEEEccccEEEEEEEccccccccccccEEEEEEEEEEccccEEEEEEcccccccccccccHHHcccccccEEEEEEcccccEEEEEEEEEcccccEEccccEEEEEEEEccccHcEEEccccccEccccccEEEEEEEcccEEEEEEEEEEEccccccccccccccccccccccEEEEEEEEcccEEcccEEEEEEccccEEEEEEEEccEEEEEEEccccEEEEEEccccccEEEEEEEEccccEEEEEEEEcccccccccEEEEEEEEEEEEEEEccHEHHHHHHHHccEEcccccEEEEEEcccccccccccccEEEEEEEEEEEEEEEEEEEEEcccccEEEcccEEEEEccccEEccccEEEEEccEEEEEEEcccccccEEEEEEcccEEEEEEccccEEEEEEEcEEEEEEEEEEcccEEEEEcEEEEEEEEEEEEEEEEcccEEEEccEEEEEEcccccccEEEEEEEEEEEEEEccccEEEEEEccccccEEEEcccccccccccccccccccccEEEEEEEEccccEEEEEEEEccccccccccccEcccEEEEEEEccccccccccccccccccccHHHEcccccccEEEEEcccccEEEEEEEccccccccEEEEcccEEEcccEEEccccccEEEEEEEEcccccEEEEEEEEEEcEEEEEEEccccEEEEEcccccEEEEEEEEEccccccHHcccccEEEEEccccccEEEEccccccccEEEEEEEEccEEEEEEEcccccccccEEEEEccHEEcccccEEEEccEEEEEEEccccccccEEEEccccEEEEcccccEEEEEcccEEEEEEEcccEEEEEEEEEEEccEEEEEccccEEEcccccccccEEEEEEccccccEccccccEEEccccccccEEEEccccccccccEEEEEEcccHHHHHHccccccccccEEEEEEEEcccccccccccccEEEEEcccEEEEccccccEEEEEccccccEEEEEEEcccEEEEEccccEEEEEEEccccccccccEEEEEEEEEccccccEEEEEEcccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccHHHHHcccccccc

mwqlmpetdgsshhllhvplkdsplsdcgglcgdLDVQIELensgafsdlYVVKGIGIGHEMVSVHLLETEFMHMADSILLTVAEamsieppspvFVLVGAALQYKLKVIrgnipqvvalpsphhrwsvsnssvaQVDNMMGLTQALRLGQTAVIVEdtrvaghtqvsslnvvlpdtlwlyisplsisgdpvegtkaipsVARWFVVSGFQYLIQMKVfsqgpgsqeiyitesddiklsdnqsecwrtfsmpndlvlkhgwrnsriLKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDrikfsldqtngvsesillpwapgiyQEVELMatggcaktssdykwfssdmatVSITASgvvqakkpgkaTVKVVSIFDSFNYDEIVIEvstpssmvmlrnfpVETVVGSHLQAAVTMKTLNGayfyrcdafsssvnwkagseSFIVLNAtkkqpfldklgtvehdislhgppcswahlyasssgrtmLHATLSkdyqhfdrsfdgpivlkassriaaypplivqqagdgsgfggywfnlgqseTTTQMEALDKlylvprthvdvllvggpepweedvDFIETFEIfngkhnhasdgvHIHVVSGSSKNLYGVFCQTLGTFELVFKrgnlvgddhplpavAEVSLSVTCSFPASIALLVDEPVNERKVIQTAAqadrspgrirvtpvtvangqtIRIAAVGisssgeafanssslclgwelsncdglaywddaygsqksaSSWERFLVLQNESGLCVVRatasgfcdakdghhsaQLLEISESFLTDAVRLQLVSTLrvnpeynllffnpdakanlsiaggSCFLEAAVNDSQVVEVIQAPEGLRCLQLmlspkglgTALVTVYdvglappraASALVQVADVDWIKIMSGEEISLMYTYMDIRVHIEDHIVELidddatsspdggyfsmsSFKIMAKHLGITTLYVSARQqsgheilsqpirvevyapprihphdiflvpgasymltlkggptVGVYVDYTSTDEEIATIHRssgqlfaispgnTTLIATVFGNGDVVICQAFssvkvgvpssvtlnaqsdqlavghempihplfpegdvfSFYELCRNynwtiedekILGFWLgdqlhsenqdlqsaasgeiqfsndldkKELGFIKTLygrsagrtdvattfscdfvsdsysesriYSASISLsvvsdlplalgipvtwvlpphytstsllpssseshgqwdsqshkgsIVYSLLKFCSEkneaaskddisidgdtikttssnhlaciqakdrssgrieiASCVRVAEVAQIrisnryplnvIHLAVGaeceipisyydalgtpfheAHNVILYHAETNYHDVVSInytlngsgKIYLKAKQHGRALVQVSmnrspqksdyVLVSVGaqlypqnpvlhvggsldfsvegfsdqvsghwfsdnesvvhvhmpsgkaeavgigstkvffecpsmklqtTVTVLSknivsidapkevltnipyptkgytFAVRFGDTHKLKALENKAisydceadppfvgyakpwmdldtgnlyclffpyspehllrsvpkskdtspfiSVSVNASLREAHRISGSASASALFVGGFSILEMDKSSLqlnltsdsnktTITILGNTGVEIHWQnqdllkispvhkedigigghaQYEVSVLRTkkfkdkiiftlpangqrvevdvnfepgqreesNRIFASFIGFFAVFSLIVVFSIAILdgrkrstrsqpsvspatpyatapgtpehsiptvsneqsprtpqpfvDYVRRTIDETPNYRREARRRFNVQNTF

mwqlmpetdgssHHLLHVPLKDSPLSDCGGLCGDLDVQIELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRvaghtqvsslnvvlPDTLWLYISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKfsldqtngvSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITAsgvvqakkpgkATVKVVsifdsfnyDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPVNERKVIQtaaqadrspgrirvtpvtvangqtIRIAAVGISSSGEAFANSSSLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEEISLMYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGeiqfsndldkKELGFIKTLygrsagrtdvATTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSESHGQWDSQSHKGSIVYSLLKFCSEKNeaaskddisidgdtikttssnhlaciqakdrssgrieIASCVRVAEVAqirisnryplNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQLYPQNPVLHVGGSLDFSVEGFSDQVSGHWFSDNESVVHVHMPSGKAEAVGIGSTKVFFECPSMKLQTTVTVLsknivsidapkevltnipyptkGYTFAVRFGDTHKLKALENKAISYDCEADPPFVGYAKPWMDLDTGNLYCLFFPYSPEHLLRSVPKSKDTSPFISVSVNASLREAHRISGSASASALFVGGFSILEMDKSSLQLNLTSDSNKTTITILGNTGVEIHWQNQDLLKISPVHKEDIGIGGHAQYEVSVLRTKKFKDKIIftlpangqrvevDVNFEPGQREESNRIFASFIGFFAVFSLIVVFSIAILDGrkrstrsqpsvspatpyatapgtpehsiptvsneqsprtpqpfvdyvrrtidetpnyrrearrrfnvqntf

MWQLMPETDGSSHHLLHVPLKDSPLSDCGGLCGDLDVQIELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPVNERKVIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGIsssgeafansssLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEEISLMYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVlpphytstsllpssseshGQWDSQSHKGSIVYSLLKFCSEKNEAASKDDISIDGDTIKTTSSNHLACIQAKDRSSGRIEIASCVRVAEVAQIRISNRYPLNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQLYPQNPVLHVGGSLDFSVEGFSDQVSGHWFSDNESVVHVHMPSGKAEAVGIGSTKVFFECPSMKLQTTVTVLSKNIVSIDAPKEVLTNIPYPTKGYTFAVRFGDTHKLKALENKAISYDCEADPPFVGYAKPWMDLDTGNLYCLFFPYSPEHLLRSVPKSKDTSPFISVSVNASLREAHRISGSASASALFVGGFSILEMDKSSLQLNLTSDSNKTTITILGNTGVEIHWQNQDLLKISPVHKEDIGIGGHAQYEVSVLRTKKFKDKIIFTLPANGQRVEVDVNFEPGQREESNRIFASFIGFFAVFSLIVVFSIAILDGRKRSTRSQPSVSpatpyatapgtpEHSIPTVSNEQSPRTPQPFVDYVRRTIDETPNYRREARRRFNVQNTF

***************LHVPLKDSPLSDCGGLCGDLDVQIELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPVNERKVIQTAA******GRIRVTPVTVANGQTIRIAAVGISSSGEAFANSSSLCLGWELSNCDGLAYWDDAY**********RFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEEISLMYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQL********************LDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYT**********************SIVYSLLKFCS************************HLACIQAKDRSSGRIEIASCVRVAEVAQIRISNRYPLNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVS*******SDYVLVSVGAQLYPQNPVLHVGGSLDFSVEGFSDQVSGHWFSDNESVVHVHMPSGKAEAVGIGSTKVFFECPSMKLQTTVTVLSKNIVSIDAPKEVLTNIPYPTKGYTFAVRFGDTHKLKALENKAISYDCEADPPFVGYAKPWMDLDTGNLYCLFFPYSPEHLLR*******************************ASALFVGGFSILEMDKSSLQLNLTSDSNKTTITILGNTGVEIHWQNQDLLKISPVHKEDIGIGGHAQYEVSVLRTKKFKDKIIFTLPANGQRVEVDVNFE******SNRIFASFIGFFAVFSLIVVFSIAILD************************************************************************

MWQ***********LLHVPLKDSPLSDCGGLCGDLDVQIELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSSVNWKAGSESFIVLNATKKQ************ISLHGPPCSWAHLYASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHAS*GVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPVNERKVIQT********************GQTIRIAAVGISSSGEAFANSSSLCLGWELSNCD********************FLVLQNESGLCVVRATASGFCDAKDGH********SESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEEISLMYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLP***ESHGQWDSQSHKGSIVYSLLKFCSEKNEAASKDDISIDGDTIKTTSSNHLACIQAKDRSSGRIEIASCVRVAEVAQIRISNRYPLNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQLYPQNPVLHVGGSLDFSVEGFSDQVSGHWFSDNESVVHVHMPSGKAEAVGIGSTKVFFECPSMKLQTTVTVLSKNIVSIDAPKEVLTNIPYPTKGYTFAVRFGDTHK**ALENKAISYDCEADPPFVGYAKPWMDLDTGNLYCLFFPYSP*************SPFISVSVNASLRE*********ASALFVGGFSILEMDKSSLQLNLTSDSNKTTITILGNTGVEIHWQ********************AQYEVSVLRTKKFKDKIIFTLPANGQRVEVDVNFEPGQ*EESNRIFASFIGFFAVFSLIVVFSIAILDGRKR******************************************YVRRTIDETPNYR*************

***********SHHLLHVPLKDSPLSDCGGLCGDLDVQIELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPVNERKVIQ********PGRIRVTPVTVANGQTIRIAAVGISSSGEAFANSSSLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEEISLMYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTS*******************KGSIVYSLLKFCSEKNEAASKDDISIDGDTIKTTSSNHLACIQAKDRSSGRIEIASCVRVAEVAQIRISNRYPLNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQLYPQNPVLHVGGSLDFSVEGFSDQVSGHWFSDNESVVHVHMPSGKAEAVGIGSTKVFFECPSMKLQTTVTVLSKNIVSIDAPKEVLTNIPYPTKGYTFAVRFGDTHKLKALENKAISYDCEADPPFVGYAKPWMDLDTGNLYCLFFPYSPEHLLRSVPKSKDTSPFISVSVNASLREAHRISGSASASALFVGGFSILEMDKSSLQLNLTSDSNKTTITILGNTGVEIHWQNQDLLKISPVHKEDIGIGGHAQYEVSVLRTKKFKDKIIFTLPANGQRVEVDVNFEPGQREESNRIFASFIGFFAVFSLIVVFSIAILDGR**************************************PQPFVDYVRRTIDETPNYRREARRRFNVQNTF

*W****E*DGSSHHLLHVPLKDSPLSDCGGLCGDLDVQIELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPVNERKVIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGISSSGEAFANSSSLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKD***SAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEEISLMYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSESHGQWDSQSHKGSIVYSLLKFCSEKNEAASKDDISIDGDTIKTTSSNHLACIQAKDRSSGRIEIASCVRVAEVAQIRISNRYPLNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQLYPQNPVLHVGGSLDFSVEGFSDQVSGHWFSDNESVVHVHMPSGKAEAVGIGSTKVFFECPSMKLQTTVTVLSKNIVSIDAPKEVLTNIPYPTKGYTFAVRFGDTHKLKALENKAISYDCEADPPFVGYAKPWMDLDTGNLYCLFFPYSPEHLLRSVPKSKDTSPFISVSVNASLREAHRISGSASASALFVGGFSILEMDKSSLQLNLTSDSNKTTITILGNTGVEIHWQNQDLLKISPVHKEDIGIGGHAQYEVSVLRTKKFKDKIIFTLPANGQRVEVDVNFEPGQREESNRIFASFIGFFAVFSLIVVFSIAILDGRK************************************TPQPFVDYVRRTIDETPNYRREARRRFN*****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1776	2.2.26 [Sep-21-2011]
Q5VU65		1888	Nuclear pore membrane gly	no	no	0.715	0.672	0.225	9e-46
Q9D2F7		1881	Nuclear pore membrane gly	yes	no	0.723	0.683	0.220	2e-44
Q8TEM1		1887	Nuclear pore membrane gly	no	no	0.703	0.662	0.232	5e-41
P11654		1886	Nuclear pore membrane gly	no	no	0.710	0.669	0.219	6e-38
Q9QY81		1886	Nuclear pore membrane gly	no	no	0.705	0.664	0.221	2e-36

>sp\|Q5VU65\|P210L_HUMAN Nuclear pore membrane glycoprotein 210-like OS=Homo sapiens GN=NUP210L PE=2 SV=1	Back alignment and function desciption

 Score =  187 bits (474), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 345/1531 (22%), Positives = 621/1531 (40%), Gaps = 261/1531 (17%)

Query: 40   ELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSIL-LTVAEAMSIEPPSPVFVL 98
            E+E      D+ +V GI  G  +V V + E  +  +A +++ L V E + + P   +++L
Sbjct: 206  EMEKEEKQGDVILVSGIRTGAAVVKVRIHEPFYKKVAAALIRLLVLENIFLIPSHDIYLL 265

Query: 99   VGAALQYKL-KVIRGNIPQVVALPSPH-------HRWSVSNS---SVAQVDNMMGLTQAL 147
            VG  ++Y++ K+++G + +V   P  H       HR +++ S    VA +D+   +  A 
Sbjct: 266  VGTYIKYQVAKMVQGRVTEV-KFPLEHYILELQDHRVALNGSHSEKVAILDDKTAMVTAS 324

Query: 148  RLGQTAVI-----VEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVA 202
            +LGQT ++     V    V+G     ++ VV P  L   + P    G+            
Sbjct: 325  QLGQTNLVFVHKNVHMRSVSGLPN-CTIYVVEPGFLGFTVQP----GN------------ 367

Query: 203  RWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPND-----LVL 257
            RW +  G  Y+I + VF +   S ++YI  SD++++         T+  P +     L  
Sbjct: 368  RWSLEVGQVYVITVDVFDKS--STKVYI--SDNLRI---------TYDFPKEYFEEQLTT 414

Query: 258  KHGWRNSRILKATSQGLGKLTASLTYF----SGLHDTKEVLKVVQEIMVCDRIKFSLDQT 313
             +G  +  I+KA   G+  + ASLT        +   K ++K  QE+    +I F +  T
Sbjct: 415  VNG--SYHIVKALKDGVVVINASLTSIIYQNKDIQPIKFLIKHQQEV----KIYFPIMLT 468

Query: 314  NGVSESILLPWAP-GIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKK-PG 371
                + +  P  P G+    ++   GG    S ++ W SS+   V +T  GVV A +  G
Sbjct: 469  ---PKFLAFPHHPMGMLYRYKVQVEGG----SGNFTWTSSNETVVIVTTKGVVTAGQVRG 521

Query: 372  KATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLN-----G 426
             +TV    + + F Y EI I V   + M +L  F  +  +G  ++  + M  +N      
Sbjct: 522  NSTVLARDVQNPFRYGEIKIHVLKLNKMELL-PFHADVEIGQIIEIPIAMYHINKETKEA 580

Query: 427  AYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGT---VEHDISLHGPP-CSWAHL 482
              F  C   S  +N                   +DK G    ++  I   GP  CS  H+
Sbjct: 581  MAFTDCSHLSLDLN-------------------MDKQGVFTLLKEGIQRPGPMHCSSTHI 621

Query: 483  YASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFN 542
             A S G T++  ++++  ++          L++S+  AAY PL                 
Sbjct: 622  AAKSLGHTLVTVSVNECDKY----------LESSATFAAYEPL----------------- 654

Query: 543  LGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPW--EEDVDFIETFEIFNGKHNHASDG 600
                     +  ++   +  ++  +++  GGP PW  E    F+E     N +       
Sbjct: 655  -------KALNPVEVALVTWQSVKEMVFEGGPRPWILEPSRFFLE----LNAEKTEKIGI 703

Query: 601  VHIHVVSGSSKN--LYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASI 658
              + + S   +N  +Y + C  LG   L F+ GN  G  +P PAV  + +   C+ PAS+
Sbjct: 704  AQVWLPSKRKQNQYIYRIQCLDLGEQVLTFRIGNHPGVLNPSPAVEVLQVRFICAHPASM 763

Query: 659  ALLVDEPVNERKVIQTAAQADRSPGRIR-VTPVTVANGQTIRIAAVGISSSGEAFANSSS 717
            ++    PV +   +   AQ    P   + + PV+      + +A          F N SS
Sbjct: 764  SV---TPVYK---VPAGAQPCPLPQHNKWLIPVSRLRDTVLELAV--FDQHRRKFDNFSS 815

Query: 718  LCLGWELSNCDGLAYWDDAY---------GSQKSASSWERFLVLQNESGLCVVRATASGF 768
            L L W+ SN + LA+++D           GS ++     + L +    G  ++     G+
Sbjct: 816  LMLEWKSSN-ETLAHFEDYKSVEMVAKDDGSGQTRLHGHQILKVHQIKGTVLIGVNFVGY 874

Query: 769  CDAKDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFL 828
             + K         EIS    +  V L LV  + V PE   ++ +PD K   S+  GS + 
Sbjct: 875  SEKKSPK------EISNLPRSVDVELLLVDDVTVVPENATIYNHPDVKETFSLVEGSGYF 928

Query: 829  EAAVNDS-QVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVD 887
               VN S Q V  I   E    ++L+  P   G   + VYD+ LA    A+A ++V+D+ 
Sbjct: 929  --LVNSSEQGVVTITYMEAESSVELV--PLHPGFFTLEVYDLCLAFLGPATAHLRVSDIQ 984

Query: 888  WIKIMSGEEISL---------------------MYTYMDIRVHIEDHIVELIDDDATSSP 926
             +++   +++ +                      +  M++++ +   IV L   +     
Sbjct: 985  ELELDLIDKVEIDKTVLVTVRVLGSSKRPFQNKYFRNMELKLQLASAIVTLTPMEQQDEY 1044

Query: 927  DGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGA 986
               Y       + A  +G TTL   A+ + G +  S P  +EV+ P R+ P  + L+P  
Sbjct: 1045 SENYI------LRATTIGQTTLVAIAKDKMGRKYTSTPRHIEVFPPFRLLPEKMTLIPMN 1098

Query: 987  SYMLTLKGGPTVGVYVDYTSTDEEIATIHRS---SGQLFAISPGNTTLIATVFGNGDVVI 1043
               +  +GGP     V ++ +++ +A ++R    +G++   +  + T+       G V++
Sbjct: 1099 MMQVMSEGGPQPQSIVHFSISNQTVAVVNRRGQVTGKIVGTAVVHGTIQTVNEDTGKVIV 1158

Query: 1044 -CQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPL--FPEGDVFSFYELC--RNYNWTI 1098
              Q    ++V    +V + A + +L    +MP++ +        FSF        ++W++
Sbjct: 1159 FSQDEVQIEVVQLRAVRILAAATRLITATKMPVYVMGVTSTQTPFSFSNANPGLTFHWSM 1218

Query: 1099 EDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTF 1158
                +L        HSE   LQ                E  F   ++ ++AGRT +  T 
Sbjct: 1219 SKRDVLDLV---PRHSE-VFLQLPV-------------EHNFAMVVHTKAAGRTSIKVTV 1261

Query: 1159 SCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSESHGQWD 1218
             C   S    E  +   S  + ++    L L        P       L+P +S+   +  
Sbjct: 1262 HCMNSSSGQFEGNLLELSDEVQILVFEKLQL------FYPECQPEQILMPINSQL--KLH 1313

Query: 1219 SQSHKGSIVYSLLKFCSEKNEAASKD-DISIDGDTIKTTSSNHLACIQAKDRSSGRIEIA 1277
            +     + V S +  C   +    +D +  +   +I  T+   +  I+    +   I   
Sbjct: 1314 TNREGAAFVSSRVLKCFPNSSVIEEDGEGLLKAGSIAGTAVLEVTSIEPFGVNQTTI--- 1370

Query: 1278 SCVRVAEVAQIRISNRYPLNVIH------LAVGAECEIPISYYDALGTPFHEAHNVILYH 1331
            + V+VA V  +R+S++  L            +G      + +Y+++G  FH  HN  LY 
Sbjct: 1371 TGVQVAPVTYLRVSSQPKLYTAQGRTLSAFPLGMSLTFTVQFYNSIGEKFH-THNTQLYL 1429

Query: 1332 AETNYHDVVSI-----NYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQL 1386
            A  N  D++ I     NYT         +A   G  LV +   R P  +DY+ V+V   +
Sbjct: 1430 A-LNRDDLLHIGPGNKNYTYMA------QAVNRGLTLVGLWDRRHPGMADYIPVAVEHAI 1482

Query: 1387 YPQNPVLHVGGSLDFSVEGFSDQVS-GHWFSDNESVVHVHMPSGKAEAVGIGSTKVFFEC 1445
             P   +  VG  + FS    S     G W     +++   + +G   A   G+  +F + 
Sbjct: 1483 EPDTKLTFVGDIICFSTHLVSQHGEPGIWMISANNILQTDIVTGVGVARSPGTAMIFHDI 1542

Query: 1446 PSM---KLQTTVTVLSKNIVSIDAPKEVLTN 1473
            P +     +  V   S+ ++S D  K  LTN
Sbjct: 1543 PGVVKTYREVVVNASSRLMLSYDL-KTYLTN 1572

Homo sapiens (taxid: 9606)

>sp\|Q9D2F7\|P210L_MOUSE Nuclear pore membrane glycoprotein 210-like OS=Mus musculus GN=Nup210l PE=2 SV=2	Back alignment and function description

>sp\|Q8TEM1\|PO210_HUMAN Nuclear pore membrane glycoprotein 210 OS=Homo sapiens GN=NUP210 PE=1 SV=3	Back alignment and function description

>sp\|P11654\|PO210_RAT Nuclear pore membrane glycoprotein 210 OS=Rattus norvegicus GN=Pom210 PE=1 SV=1	Back alignment and function description

>sp\|Q9QY81\|PO210_MOUSE Nuclear pore membrane glycoprotein 210 OS=Mus musculus GN=Nup210 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1776
296087607		1961	unnamed protein product [Vitis vinifera]	0.993	0.900	0.662	0.0
359488807		2363	PREDICTED: nuclear pore membrane glycopr	0.989	0.743	0.663	0.0
255560914		2256	RNA binding protein, putative [Ricinus c	0.976	0.768	0.656	0.0
356513961		2304	PREDICTED: nuclear pore membrane glycopr	0.986	0.760	0.595	0.0
449446702		2257	PREDICTED: LOW QUALITY PROTEIN: nuclear	0.977	0.769	0.585	0.0
297805634		1918	EMB3012 [Arabidopsis lyrata subsp. lyrat	0.970	0.898	0.573	0.0
334188094		1923	protein embryo defective 3012 [Arabidops	0.973	0.899	0.567	0.0
9759492		1962	nuclear pore protein-like [Arabidopsis t	0.973	0.881	0.556	0.0
449489576		1758	PREDICTED: nuclear pore membrane glycopr	0.760	0.768	0.600	0.0
297853498		1722	EMB3012 [Arabidopsis lyrata subsp. lyrat	0.814	0.839	0.569	0.0

>gi\|296087607\|emb\|CBI34863.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 2413 bits (6254), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1200/1810 (66%), Positives = 1431/1810 (79%), Gaps = 45/1810 (2%)

Query: 1    MWQLMPETDGSSHHLLHVPLKDSPLSDCGGLCGDLDVQIELENSGAFSDLYVVKGIGIGH 60
            MWQL PETDG   HL+HVPLKDSPLSDCGGLCGDL VQI+LE+ GAFSDLYVVKGIGIGH
Sbjct: 163  MWQLRPETDGLPPHLVHVPLKDSPLSDCGGLCGDLSVQIKLEDGGAFSDLYVVKGIGIGH 222

Query: 61   EMVSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVAL 120
            E+VSVHLLE +F HMAD I+LTVAEAMS++PPSPVF+L+GAA++Y LKVIRGNIPQVVAL
Sbjct: 223  EVVSVHLLEPQFEHMADKIVLTVAEAMSLDPPSPVFILIGAAVRYTLKVIRGNIPQVVAL 282

Query: 121  PSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRVAGHTQVSSLNVVLPDTLWL 180
            PSP+HRWSV NSSVAQVD+ MGL   L LG T V VEDTRVAGH Q+SSL+VVLPDTL L
Sbjct: 283  PSPYHRWSVLNSSVAQVDSQMGLVNVLSLGVTTVTVEDTRVAGHIQMSSLHVVLPDTLCL 342

Query: 181  YISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSD 240
            YI PLS+S DP+EG K+IPS ARW+  SG QYLIQMKVFS GPG QE+YITESD++ L  
Sbjct: 343  YILPLSLSDDPLEGAKSIPSGARWYAFSGQQYLIQMKVFSGGPGGQEVYITESDEVSLQY 402

Query: 241  NQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEI 300
            NQS  W+ F + + + +KH W NSRILK TS+GLG LTASL+YFSG    KEVLKVVQE+
Sbjct: 403  NQSIYWKAFLVSDRIAVKHDWWNSRILKMTSEGLGNLTASLSYFSGQPGRKEVLKVVQEV 462

Query: 301  MVCDRIKFSLDQTNGVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSIT 360
            MVC+++KFS D+ + VSE ILLPWAP +YQEV+L ATGGCAK+SSDYKWFSSDMATVS++
Sbjct: 463  MVCEKVKFSFDKRSAVSERILLPWAPAVYQEVDLKATGGCAKSSSDYKWFSSDMATVSVS 522

Query: 361  ASGVVQAKKPGKATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVT 420
            ASGV+QAKKPGKA VKVVSIFD FNYDE+V+EV+ PSSMVML+NFPVETVVGS LQAAVT
Sbjct: 523  ASGVIQAKKPGKAAVKVVSIFDPFNYDEVVVEVALPSSMVMLQNFPVETVVGSQLQAAVT 582

Query: 421  MKTLNGAYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWA 480
            MK  NGAYFYRCDAFSS V WKAGSESFI++NAT + P LDKL +VE   S++GPPC+W 
Sbjct: 583  MKASNGAYFYRCDAFSSFVRWKAGSESFIIVNATGETPVLDKLESVEPYASVYGPPCAWT 642

Query: 481  HLYASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYW 540
            ++YASS+GR MLHATL+K+YQH D  F GPIVL+ASSRI AY PL+++QAGDG+ FGGYW
Sbjct: 643  YVYASSAGRAMLHATLTKEYQHHDHPFHGPIVLQASSRIGAYLPLVLRQAGDGNQFGGYW 702

Query: 541  FNLGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDG 600
             N  Q+E  +Q E LD L+LVP TH+DV+LVGGPE W++ VDF ET +I + +H    DG
Sbjct: 703  INTAQAEAHSQFENLDDLFLVPGTHLDVMLVGGPEWWDKSVDFNETVDILD-EHARLKDG 761

Query: 601  VHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIAL 660
            V +H VS S  +LY V CQ LGT+++ FKRGNLVGDDHPLPAVAEV LS+TCSFP+SI L
Sbjct: 762  VLVHEVSSSYGSLYRVLCQILGTYKIAFKRGNLVGDDHPLPAVAEVELSLTCSFPSSITL 821

Query: 661  LVDEPVNERKVIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGISSSGEAFANSSSLCL 720
            + DEPVNE  VI  A QADR+P RIRVTP+TVANG+TIRIAAVGIS+SG+AFANSSSLCL
Sbjct: 822  IADEPVNEPGVIWAATQADRNPERIRVTPITVANGRTIRIAAVGISNSGKAFANSSSLCL 881

Query: 721  GWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQL 780
             WELSNCD LA+WDD+Y    S+S WERFL+LQNES LC+VRAT  GF     GH SA L
Sbjct: 882  KWELSNCDALAFWDDSYDLGGSSSGWERFLILQNESRLCIVRATVIGFAGTVSGHVSAPL 941

Query: 781  LEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEV 840
            LE SE+ LTDAVRLQLVS+LRV PE+ LLFFN DAKANLSI GGSCFL+A VNDS+VV+V
Sbjct: 942  LESSENVLTDAVRLQLVSSLRVTPEFKLLFFNSDAKANLSITGGSCFLDAVVNDSRVVDV 1001

Query: 841  IQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEEISLM 900
            IQ P GL+CLQL+++PKGLGTALVTVYD+GLAP  +AS++VQVADVDWI+I SGEEISLM
Sbjct: 1002 IQPPPGLQCLQLIVAPKGLGTALVTVYDIGLAPHLSASSVVQVADVDWIRITSGEEISLM 1061

Query: 901  -----------------------YTYMDIRVHIEDHIVELIDDDA-TSSPDGGYFSMSSF 936
                                   Y YM+I+VHIEDHIV+L+DDD   SS  GGY +   F
Sbjct: 1062 EGSVQSIIVMAGVDDGSTFDASQYVYMNIQVHIEDHIVDLVDDDNDISSIGGGYVNSPKF 1121

Query: 937  KIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGP 996
             I+AKHLG+T LYVSARQ SG+EI S  I+VEVYAPPRIHP DIFLVPGA+Y+L +KGGP
Sbjct: 1122 MILAKHLGVTILYVSARQASGYEIASNQIKVEVYAPPRIHPPDIFLVPGAAYVLNVKGGP 1181

Query: 997  TVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPS 1056
             +GV ++Y S D+ IAT+++SSG+L AISPGN+TL+ATV+G GD VICQA+  +KVGVPS
Sbjct: 1182 QIGVVIEYASLDDRIATVNKSSGRLSAISPGNSTLVATVYGKGDTVICQAYGRIKVGVPS 1241

Query: 1057 SVTLNAQSDQLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQLHSEN 1116
             VTLN QS+QL VG EMPI P  P+GD+FSFYELC+NY WT+EDEK+L F + + +  + 
Sbjct: 1242 LVTLNVQSEQLDVGREMPIFPSLPQGDLFSFYELCKNYKWTVEDEKVLSFHMAEHIRGDR 1301

Query: 1117 QDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDSYSESRIYSAS 1176
              L S+ S EI+    LD+K+LGFI  LYGRSAGRT VA +F+CDF+S  +S+SR YSAS
Sbjct: 1302 YGLPSSGSKEIKLPGHLDEKDLGFINMLYGRSAGRTTVAVSFNCDFISSGHSQSRSYSAS 1361

Query: 1177 ISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSESHGQWDSQSHKGSIVYSLLKFCSE 1236
            +S+SVVS+LPLA G+P+TWVLPP+YT++SLLPSSSES+GQWD  S KG+I YSLL+ C  
Sbjct: 1362 MSISVVSELPLAFGVPITWVLPPYYTTSSLLPSSSESYGQWD-LSRKGTITYSLLRSCGG 1420

Query: 1237 KNEAASKDDISIDGDTIKTTSSNHLACIQAKDRSSGRIEIASCVRVAEVAQIRIS-NRYP 1295
            KNE   KD ISID D IKTT SN+LACIQAKDR++G+  IASCVRVAEVAQIRI+  ++ 
Sbjct: 1421 KNEEVQKDAISIDRDRIKTTESNNLACIQAKDRTTGKTGIASCVRVAEVAQIRITPQKFS 1480

Query: 1296 LNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGKIYLK 1355
             +VI LAV AE ++PI++ D LG PFHEA NVI   AETNY D+VSIN T +G G I+LK
Sbjct: 1481 FHVIDLAVDAEVKLPINFCDVLGNPFHEAFNVIPLDAETNYPDIVSINSTGDGYGNIHLK 1540

Query: 1356 AKQHGRALVQVSMNRSPQKSDYVLVSVGAQLYPQNPVLHVGGSLDFSVEGFSDQVSGHWF 1415
              +HGRAL++VS+N SP KSDYVLVSVGA L P+NPVLH+GG L+FS+EG  D+VSG W 
Sbjct: 1541 GIRHGRALLRVSINSSPHKSDYVLVSVGAYLSPRNPVLHLGGHLNFSIEGLKDKVSGQWL 1600

Query: 1416 SDNESVVHVHMPSGKAEAVGIGSTKVFFECPSMKLQTTVTVLSKNIVSIDAPKEVLTNIP 1475
            S NESV+ + + SG+A+AVG G+T+VFFEC S+KLQTTVTV    IV +DAP E LTN P
Sbjct: 1601 SGNESVISLDVLSGEAQAVGEGTTQVFFECSSLKLQTTVTVQKGKIVLVDAPMETLTNAP 1660

Query: 1476 YPTKGYTFAVRF-GDT--HKLKALENK-AISYDCEADPPFVGYAKPWMDLDTGNLYCLFF 1531
             P KGY F+V+F  DT  H L+   N   + +DC  DPPFVGYAKPW D  TG  YCLFF
Sbjct: 1661 IPAKGYNFSVKFSSDTYGHDLEGFRNDMGVLFDCRVDPPFVGYAKPWRDFGTGKSYCLFF 1720

Query: 1532 PYSPEHLLRSVPKSKDTSPFISVSVNASLREAHRISGSASASALFVGGFSILEMDKSSLQ 1591
            PYSPEHL RSVPKSKD  P+IS+S++AS++E + +SG  SASALFVGGFSILEM K    
Sbjct: 1721 PYSPEHLARSVPKSKDMRPYISLSISASVQETNHVSG--SASALFVGGFSILEMGK---- 1774

Query: 1592 LNLTSDSNKTTITILGNTGVEIHWQNQDLLKISPVHKEDIGIGGHAQYEVSVLRTKKFKD 1651
            LNLT+ SNKT ITILGNT V+IHW  +D + ISPVHKED GIGG A+YEV VL+ KKFKD
Sbjct: 1775 LNLTAGSNKTIITILGNTDVDIHWHERDSIMISPVHKEDFGIGGLAKYEVKVLQAKKFKD 1834

Query: 1652 KIIFTLPANGQRVEVDVNFEPGQREESNR-----IFASFIGFFAVFSLIVVFSIAILDGR 1706
            K++ TLPANGQRVE+DV+++PG+R  S       ++A  +G  A+  L +   I  LD  
Sbjct: 1835 KVVITLPANGQRVELDVSYDPGERAYSVSTVKVTLWAGVVGCIALLLLTLAIFIFFLD-- 1892

Query: 1707 KRSTRSQPSVSPATPYATAPGTPEHSIPTVSNEQSPRTPQPFVDYVRRTIDETPNYRREA 1766
             R  R++PS  PA     AP TP+   P V N+ SPRTPQPFV+YVRRTI ETP Y RE 
Sbjct: 1893 -RPDRARPSNPPANSSIVAPTTPDRRSPAVQNDSSPRTPQPFVEYVRRTIHETPYYTREG 1951

Query: 1767 RRRFNVQNTF 1776
            RRR N QNT+
Sbjct: 1952 RRRVNPQNTY 1961

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359488807\|ref\|XP_002272790.2\| PREDICTED: nuclear pore membrane glycoprotein 210-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255560914\|ref\|XP_002521470.1\| RNA binding protein, putative [Ricinus communis] gi\|223539369\|gb\|EEF40960.1\| RNA binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356513961\|ref\|XP_003525676.1\| PREDICTED: nuclear pore membrane glycoprotein 210-like [Glycine max]	Back alignment and taxonomy information

>gi\|449446702\|ref\|XP_004141110.1\| PREDICTED: LOW QUALITY PROTEIN: nuclear pore membrane glycoprotein 210-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297805634\|ref\|XP_002870701.1\| EMB3012 [Arabidopsis lyrata subsp. lyrata] gi\|297316537\|gb\|EFH46960.1\| EMB3012 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|334188094\|ref\|NP_198864.2\| protein embryo defective 3012 [Arabidopsis thaliana] gi\|332007169\|gb\|AED94552.1\| protein embryo defective 3012 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|9759492\|dbj\|BAB10497.1\| nuclear pore protein-like [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449489576\|ref\|XP_004158353.1\| PREDICTED: nuclear pore membrane glycoprotein 210-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297853498\|ref\|XP_002894630.1\| EMB3012 [Arabidopsis lyrata subsp. lyrata] gi\|297340472\|gb\|EFH70889.1\| EMB3012 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1776
DICTYBASE\|DDB_G0288545		1916	nup210 "nucleoporin 210" [Dict	0.192	0.177	0.250	2.8e-44
UNIPROTKB\|F1NZB4		1888	NUP210 "Uncharacterized protei	0.251	0.236	0.244	3.2e-36
UNIPROTKB\|F1SPG4		1898	NUP210 "Uncharacterized protei	0.307	0.287	0.228	5.9e-36
MGI\|MGI:1924845		1881	Nup210l "nucleoporin 210-like"	0.322	0.304	0.227	2e-35
ZFIN\|ZDB-GENE-050208-132		1869	nup210 "nucleoporin 210" [Dani	0.253	0.240	0.228	1.3e-34
UNIPROTKB\|Q5VU65		1888	NUP210L "Nuclear pore membrane	0.329	0.309	0.230	1.2e-33
UNIPROTKB\|Q8TEM1		1887	NUP210 "Nuclear pore membrane	0.289	0.272	0.231	1.3e-32
MGI\|MGI:1859555		1886	Nup210 "nucleoporin 210" [Mus	0.292	0.275	0.222	7.4e-31
UNIPROTKB\|F1MPW7		1830	NUP210 "Uncharacterized protei	0.292	0.283	0.229	1.1e-29
RGD\|69339		1886	Nup210 "nucleoporin 210" [Ratt	0.292	0.275	0.222	2.7e-29

DICTYBASE\|DDB_G0288545 nup210 "nucleoporin 210" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

 Score = 239 (89.2 bits), Expect = 2.8e-44, Sum P(5) = 2.8e-44
 Identities = 94/375 (25%), Positives = 169/375 (45%)

Query:    36 DVQIELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSILLTVAEAMSIEPPSPV 95
             DV +++E     +   +V+G+  G   ++  L E  +  +  S  +++ E + + P   +
Sbjct:   219 DVALKMEQESLQTSFVLVQGVDTGRTEINTKLTEPTYKDIQHSTTISILEPLQLNPSYLL 278

Query:    96 FVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVI 155
             +V+ G  +QY+L   + NI + + LP+P++ WS SNS V +VDN  G   AL LG+T + 
Sbjct:   279 YVIPGTQIQYQLLTKKRNILENIPLPNPNYIWSSSNSKVGKVDNS-GNFMALDLGRTDLK 337

Query:   156 VEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQ 215
             V+   ++ +   + +NVV P  L + I PL  SG        +  V+ W ++    Y++ 
Sbjct:   338 VQHKNMSDNKVQAFVNVVHPSYLAIKIEPLK-SG--------LGPVSNWNLIENRDYILV 388

Query:   216 MKVFSQGPGSQEIYITE-SDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQGL 274
             ++++       +I+ +E + D+ +     E   +  +P +   +    ++  LKA  QGL
Sbjct:   389 VELYDAS--GHKIHSSEITFDLNIPTEYFERLPSSQIPPNTPKRS---DTFYLKAIKQGL 443

Query:   275 GKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSESILLPWAPGIYQEVEL 334
               L ASL     L+  K+  +++  I V   +     Q       + LP+ P   Q   +
Sbjct:   444 VALKASLVKVYDLN-LKKYTQLLNPISVEQEVTIH-SQIQLSPPIVYLPYLPNHRQYSMI 501

Query:   335 MATGGCAK-----TSSDYKWFSSDMATVSITASG-----VVQAKKPGKATVKVVSIFDSF 384
                GG  +      +S         A  S T+SG     VV  K P      +V +    
Sbjct:   502 RPIGGSGEYNWYTNNSAIVTVDPTGAITSQTSSGQTEVIVVDKKNPHNRDKVLVIVLQP- 560

Query:   385 NYDEIVIEVSTPSSM 399
               DEI+I   TPS +
Sbjct:   561 --DEIII---TPSQV 570

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB\|F1NZB4 NUP210 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SPG4 NUP210 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

MGI\|MGI:1924845 Nup210l "nucleoporin 210-like" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-050208-132 nup210 "nucleoporin 210" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5VU65 NUP210L "Nuclear pore membrane glycoprotein 210-like" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8TEM1 NUP210 "Nuclear pore membrane glycoprotein 210" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:1859555 Nup210 "nucleoporin 210" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MPW7 NUP210 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

RGD\|69339 Nup210 "nucleoporin 210" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.2.1.n1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00020663001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (1952 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1776
pfam02368		79	pfam02368, Big_2, Bacterial Ig-like domain (group	0.001
pfam02368		79	pfam02368, Big_2, Bacterial Ig-like domain (group	0.002

>gnl\|CDD\|217000 pfam02368, Big_2, Bacterial Ig-like domain (group 2)	Back alignment and domain information

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 982  LVPGASYMLTLKGGPTVGVYVDYT--STDEEIATIHRSSGQLFAISPGNTTLIATVFGNG 1039
            L+ GA+  L     P+       T  S++  IAT+  S+G + A++ G  T+ AT  G+ 
Sbjct: 14   LLKGATLQLGATVLPSDASNGKVTWSSSNTSIATVSGSTGLVTALAKGTATITATS-GDN 72

Query: 1040 DVVIC 1044
                 
Sbjct: 73   QSATY 77

This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins. Length = 79

>gnl\|CDD\|217000 pfam02368, Big_2, Bacterial Ig-like domain (group 2)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1776
KOG1833		679	consensus Nuclear pore complex, gp210 component [N	100.0
KOG1833		679	consensus Nuclear pore complex, gp210 component [N	99.95
smart00635		81	BID_2 Bacterial Ig-like domain 2.	97.77
PF02368		79	Big_2: Bacterial Ig-like domain (group 2); InterPr	97.56
PF02368		79	Big_2: Bacterial Ig-like domain (group 2); InterPr	97.44
smart00635		81	BID_2 Bacterial Ig-like domain 2.	97.13
TIGR00864		2740	PCC polycystin cation channel protein. Note: this	96.73
COG5492		329	Bacterial surface proteins containing Ig-like doma	91.73
TIGR00864		2740	PCC polycystin cation channel protein. Note: this	91.42
COG5492		329	Bacterial surface proteins containing Ig-like doma	87.18

>KOG1833 consensus Nuclear pore complex, gp210 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=2.9e-35  Score=350.90  Aligned_cols=655  Identities=21%  Similarity=0.225  Sum_probs=448.7

Q ss_pred             EEecCceEEEEEecCCccCcccc-ceEEEEE-EecCCCCcccCceeeeeeecCcceEEEEeeccccEEEEEEEEcccCCC
Q 000256          559 YLVPRTHVDVLLVGGPEPWEEDV-DFIETFE-IFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGD  636 (1776)
Q Consensus       559 ~L~~GSs~~~~~~GGP~pW~~e~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~V~C~~lGe~~l~l~vgN~~~~  636 (1776)
                      ++..||+.++...|||++|..|. .+++... ..++.+        ..+.   ....|+..|+.+|..+.  +.||....
T Consensus         2 ~~~~~st~~~~~~~~p~r~~~e~~~~ik~~t~~~~~~~--------~~~~---~~v~~~is~q~v~~~~~--~~~nl~~i   68 (679)
T KOG1833|consen    2 GRKYGSTPRHIEVGGPFRWLPEKMTLIKTMTQVMSEGG--------PQPQ---SIVHFSISNQTVAVVNR--RGGNLGKI   68 (679)
T ss_pred             cccccCccceEEcCCCcccccchhHHHHHHHHHhhccC--------Cccc---eEEEEeecchhhhhhhh--hccccccc
Confidence            45689999999999999997763 4443210 112211        1111   23489999999999877  99999999


Q ss_pred             CCCCCeeeEEEEEEEEecCCeEEEEEccCcchhhhhcccccCCCCCCceeEEEEEecCCCeEEEEEEEEcCCCCeEeecC
Q 000256          637 DHPLPAVAEVSLSVTCSFPASIALLVDEPVNERKVIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGISSSGEAFANSS  716 (1776)
Q Consensus       637 ~np~Pa~~~~~v~v~C~~P~~L~l~v~~P~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~r~~~l~v~vfD~~Grkf~N~S  716 (1776)
                      .+|.|++.++++.++|..|..+.+...+|.+++..++......|         +.+.|+....+.-..--+.+..|.|++
T Consensus        69 ~~~~~~h~~i~~~~~~~~~~~v~~~~~~q~~~l~~vr~~~~a~r---------~~van~~~~~va~v~~s~~~~~fSns~  139 (679)
T KOG1833|consen   69 VGPAPVHGEIQTSNECTGPVIVFSQDEVQIEQLRAVRILAAATR---------LIVANGMPVYVAGVTSTQTPFSFSNSN  139 (679)
T ss_pred             cccceeehheeeeecccCceEEEEeccchhhHHHHHHHHhhccc---------eEEecCceEEEEEeecccCcceecCCC
Confidence            99999999999999999999999998887776666665444444         244777766666544444444444443


Q ss_pred             CceEEEEecCCCcceEeecccccccCCCcceeEEEEeeccceEEEEEEEeeEeeccCCccccccccccccceeeEEEEEE
Q 000256          717 SLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEISESFLTDAVRLQL  796 (1776)
Q Consensus       717 SL~l~W~~s~~~~l~~~~~~~~~~~~~s~~~~~~~l~~~~G~~~I~At~~gy~~~~~~~~~~~~~~~~~~~i~~~iel~l  796 (1776)
                      -+.          +-||+.+   +....+|+++..+++..|.+..+ .+.+..   .+.                     
T Consensus       140 ~~~----------~~~w~~~---~~t~~~~e~~~~~~~~~~~~~~~-~v~~~~---~g~---------------------  181 (679)
T KOG1833|consen  140 PLL----------TFHWSMS---DVTDLVPEHSEVFLQLPGEHNFA-VVHTKA---AGR---------------------  181 (679)
T ss_pred             chh----------eeecchh---hhhccccccchHHHhcccceeeE-EEeeec---ccc---------------------
Confidence            322          2366554   23346788888888888988877 555531   111                     


Q ss_pred             eeceEEeCceeEEeeCCCceEEEEEcceeeEEEEEEcCcceEEEEeccCcceeeEEEEeeCcceEEEEEEEeccCCCCCc
Q 000256          797 VSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRA  876 (1776)
Q Consensus       797 v~~i~l~P~~~~l~n~p~~~~~l~i~gGSG~f~~sssn~~Va~v~~~~~g~~~~~i~v~P~~~G~~~V~V~Dlcl~~~~~  876 (1776)
                          +..+..+..+|  .....+...|||+.++....+++.+.+...   +.|.+-+++|++.|+++|+|.|.|+++ .+
T Consensus       182 ----~s~~~tl~~~~--vs~~~~~~t~gs~~~e~~~l~t~~s~v~~p---l~q~~~vl~Pkn~Gq~kl~v~d~g~~~-~s  251 (679)
T KOG1833|consen  182 ----TSIKVTLHCMN--VSSGQFEGTGGSLSDEVQILMTTGSDVGFP---LIQAHDVLNPKNNGQVKLRVSDAGLVG-QS  251 (679)
T ss_pred             ----ceeEEEEEEee--cccCccccccceeEEEEEeeecccccccch---hhcHHHhcCCCCCceEEEEEecccccc-cc
Confidence                01111222222  222338999999999999888887766433   355667899999999999999999999 89


Q ss_pred             ceEEEEEeeeEEEEEeeccEEEEE-EEeeeeEEEeecc-eEEEEe-------CCCC-CCCCCCccceeeEEEEEeEEEEE
Q 000256          877 ASALVQVADVDWIKIMSGEEISLM-YTYMDIRVHIEDH-IVELID-------DDAT-SSPDGGYFSMSSFKIMAKHLGIT  946 (1776)
Q Consensus       877 a~a~V~V~di~~I~l~~~~eI~v~-~~~mdl~l~i~~~-iv~l~~-------~~~~-~~p~~~~~~~~~~~v~g~~~G~t  946 (1776)
                      +.|.++|.|+++|+++...-++.| --..++....+++ .|+..+       .+.. ..+..+++...+|.++|.++|++
T Consensus       252 a~al~rvad~~~l~id~eglv~~G~s~~vtll~~~~~g~~Feveq~~l~d~qvd~~~lhV~s~~~sg~~~tl~A~~lGtt  331 (679)
T KOG1833|consen  252 ADALVRVADIHSLAIDAEGLVEIGASVEVTLLAQDETGASFEVEQRPLADAQVDASNLHVISTKVSGLRYTLRANSLGTT  331 (679)
T ss_pred             cchheeccCccEeeecccccccCCceEEEEEEeecccCCccccccccccccccccccCcccccccccceeEEEeeccccE
Confidence            999999999999999876444444 1122233333333 222221       1111 22233556678999999999999


Q ss_pred             EEEEEEEccCceEEEEeeEEEEEeCCCeeccCeEEEecCceEEEEEeeCCccceEEEEeecCceEEEEEcccceEEEEee
Q 000256          947 TLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISP 1026 (1776)
Q Consensus       947 tLtas~~~~~G~~i~S~~~~I~Vf~PL~l~P~~ltLv~Gs~~ql~~~GGP~p~~~v~fss~n~~VasV~~~~G~Vt~~~~ 1026 (1776)
                      ++++++++.+|+...|.++++|+|.|+++.|+.++|+||+++++.++|||+|...+.|+-.|..+|.++. ++.++..+.
T Consensus       332 tl~vs~~~S~G~vls~~Th~vqlysp~~l~p~~l~l~PGsk~~l~~eGGp~p~~~ld~~~~~n~~A~ie~-s~~l~~~ap  410 (679)
T KOG1833|consen  332 TLSVSSKSSSGRVLSSRTHTVQLYSPIFLQPKRLTLIPGSKFQLEVEGGPQPTPPLDFSLNNNMIASIEP-SILLTSSAP  410 (679)
T ss_pred             EEEEEEecccceEeeccceeEEEeccccCCcceEEEecCCceEEEEccCCCCCCcccceecccceeeccc-ccceEeecc
Confidence            9999999888999888999999999999999999999999999999999999999999999999999998 999999999


Q ss_pred             eeeEEEEEEecccceEEEEEeEEEEEEceeeEEEEeccceeecCcEEeEEEeec-----CCceeeecceee--EEEEEEC
Q 000256         1027 GNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFP-----EGDVFSFYELCR--NYNWTIE 1099 (1776)
Q Consensus      1027 G~t~It~~v~~~~~~~v~e~~~~V~V~~l~~i~I~a~~~rl~~G~~~pv~~~g~-----~g~pfsf~n~~l--~f~Ws~s 1099 (1776)
                      |+++++++..-.+|. ++++.+-+.+..+-++.+.+....+.+|....++.++.     +..+|.|.....  .-+|.-+
T Consensus       411 g~ttiy~~~ivG~ga-v~~qti~lsv~glPgi~l~aas~~v~tgdrvtl~~v~~spg~ede~~f~fi~~vvpv~~~~~e~  489 (679)
T KOG1833|consen  411 GYTTIYGTVIVGDGA-VTEQTIVLSVAGLPGIILSAASRKVETGDRVTLRLVGVSPGAEDEEPFAFIKAVVPVKSHRNEV  489 (679)
T ss_pred             CCcceeeEEEEecCe-eEEEEEEeeecCcCceeeecccceeecCceEEEEEEeecCCccccchhhhccceeEEeeccCcC
Confidence            999999954433555 45667888888888898999999999999888887763     134555444432  2223300


Q ss_pred             CcceeEEEecccccccccccccccccceEecccccccccceEEEEEEccceEEEEEEEEEEecCCCCcc--cceeeeeeE
Q 000256         1100 DEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDSYS--ESRIYSASI 1177 (1776)
Q Consensus      1100 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~e~~f~v~v~~~~~G~t~I~vtv~~~~~~~~~~--~~~~lsa~i 1177 (1776)
                              +.                   |+                .++               ..++  ....|+++-
T Consensus       490 --------p~-------------------Ln----------------lsa---------------r~~~t~rl~tF~t~t  511 (679)
T KOG1833|consen  490 --------PL-------------------LN----------------LSA---------------RKHFTGRLSTFTTET  511 (679)
T ss_pred             --------cc-------------------cC----------------hhh---------------hcccccccCcceecc
Confidence                    00                   00                000               0000  022334444


Q ss_pred             EEEEEecccccccCCceeecCCCCccceeccCCcccccccccCCceeEEEEEeecccCCCCccccccceecCCCeEEecC
Q 000256         1178 SLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSESHGQWDSQSHKGSIVYSLLKFCSEKNEAASKDDISIDGDTIKTTS 1257 (1776)
Q Consensus      1178 ~I~Vve~L~L~~~~p~~~~l~P~~~~~~llP~s~~~l~~t~~~~gs~~i~y~il~~~~~~~~v~~~d~~~I~~g~i~t~~ 1257 (1776)
                      .+++...+.+         +.|+..-       -++        +     +     |        .|    +++..++..
T Consensus       512 ~~~~e~gl~v---------~~~~~di-------n~~--------~-----v-----~--------~d----N~~l~ktt~  545 (679)
T KOG1833|consen  512 TITVEDGLSV---------VQPEMDI-------NTV--------R-----V-----A--------PD----NSQLKKTTA  545 (679)
T ss_pred             eeEEeccceE---------EecccCC-------ccc--------e-----e-----c--------CC----CccceeEee
Confidence            4444444444         2332210       000        0     0     1        11    222223333


Q ss_pred             cceeEEEEEEeccCcceeEEEEEEEceeeEEEEEcc-CCcceeeeecCcEEEEEEEEeccCCCccccccceEEEEEEEce
Q 000256         1258 SNHLACIQAKDRSSGRIEIASCVRVAEVAQIRISNR-YPLNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNY 1336 (1776)
Q Consensus      1258 ~~G~a~i~v~d~~~g~qt~~~~V~Vs~V~~l~i~~~-~~~~~~~lpvG~s~~~~V~~~D~~G~~F~~~~~~~~l~~~~n~ 1336 (1776)
                      ..--+++.-.|...+   +.++++++.+.+.|..++ .+.+....++   +......++-.+-+|.+.+....++.+.++
T Consensus       546 ~lqA~l~~~~d~tS~---ia~~~~~s~v~q~r~ks~~ip~h~~dsai---le~~~~~v~~l~vt~l~vhg~ta~~~~~en  619 (679)
T KOG1833|consen  546 WLQASLSVESDFTSR---IAISADGSLVTQGREKSAAIPVHNVDSAI---LETVLIPVTVLRVTSLDVHGTTALKSAFEN  619 (679)
T ss_pred             cccceEEEeeccccc---eEeecchhhhhccccCCCCCcccccchhh---heeecceeeeeeeEeecccchhhhhhhhcC
Confidence            333355555555433   778888888888887655 2344444444   444555666777777777766667788889


Q ss_pred             eeeEEEEeecCCCcEEEEEEceeeeEEEEEEeccCCCceeEEEEeeeeEEecCCCeEEec
Q 000256         1337 HDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQLYPQNPVLHVG 1396 (1776)
Q Consensus      1337 ~dlv~i~~~~~~n~t~~v~av~~G~t~L~v~d~~~~~i~dyv~v~V~~~I~P~~~~L~vG 1396 (1776)
                      .+++.+..+.... .-+++..+.|.++.+++...+.+-.+|+.+++.....|+..+.+.|
T Consensus       620 s~~~FLnt~~~~p-v~yv~~~arG~al~~~sns~n~rph~~vl~p~la~~~~Q~~~i~~~  678 (679)
T KOG1833|consen  620 SPLIFLNTGAADP-VKYVPQEARGVALVSLSNSTNHRPHLLVLIPYLACCVVQHWLISIR  678 (679)
T ss_pred             CceEEeecccccc-eEEeeccccCceeeeeccCCCCCCcceEEeChhhcccccceEEecc
Confidence            9999999885333 5578888999999999977777777999999999999998877665

>KOG1833 consensus Nuclear pore complex, gp210 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>smart00635 BID_2 Bacterial Ig-like domain 2	Back alignment and domain information

>PF02368 Big_2: Bacterial Ig-like domain (group 2); InterPro: IPR003343 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins as well as in some uncharacterised eukaryote proteins	Back alignment and domain information

>PF02368 Big_2: Bacterial Ig-like domain (group 2); InterPro: IPR003343 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins as well as in some uncharacterised eukaryote proteins	Back alignment and domain information

>smart00635 BID_2 Bacterial Ig-like domain 2	Back alignment and domain information

>TIGR00864 PCC polycystin cation channel protein	Back alignment and domain information

>COG5492 Bacterial surface proteins containing Ig-like domains [Cell motility and secretion]	Back alignment and domain information

>TIGR00864 PCC polycystin cation channel protein	Back alignment and domain information

>COG5492 Bacterial surface proteins containing Ig-like domains [Cell motility and secretion]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1776
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
3ncx_A		189	Intimin, intimin adherence protein; intimin TIR, c	2e-11

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 74.5 bits (182), Expect = 3e-13
 Identities = 113/754 (14%), Positives = 205/754 (27%), Gaps = 254/754 (33%)

Query: 7   ETDGSSHH---LLHVPLKDSPLSDCGGLCGDLDVQ-IELENSGAFSDLYVVKGIGIGHEM 62
           ET    +    +L V               + D + ++       S   +   I     +
Sbjct: 10  ETGEHQYQYKDILSVFEDA--------FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61

Query: 63  VSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPS 122
                L   F       LL+       +    V   V   L+   K +   I      PS
Sbjct: 62  SGTLRL---F-----WTLLS-------KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106

Query: 123 PHHRWSVSNSSVAQVDN-------------MMGLTQALRLGQTA--VIVEDTRVAGHTQV 167
              R  +        DN              + L QAL   + A  V+++    +G T  
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT-W 165

Query: 168 SSLNVVLPDTL---------WLYISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKV 218
            +L+V L   +         WL +   +     +E  + +                    
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-------------LYQIDPN 212

Query: 219 FSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDL-VLKHGWRNSRILKA---TSQGL 274
           ++               I+    +    + +   N L VL +   N++   A   + + L
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPY--ENCLLVLLNVQ-NAKAWNAFNLSCKIL 269

Query: 275 GKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSESILLPWAPGIYQEVEL 334
             LT   T F  + D           +    +  + D+     +S+LL +     Q++  
Sbjct: 270 --LT---TRFKQVTDFLSAATTTHISLDHHSMTLTPDE----VKSLLLKYLDCRPQDLPR 320

Query: 335 MATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEI--VIE 392
                            +      I  S      + G AT      +   N D++  +IE
Sbjct: 321 EVLTT------------NPRRLSIIAES-----IRDGLATWDN---WKHVNCDKLTTIIE 360

Query: 393 VSTPSSMVMLRNF-PVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSSVN---------WK 442
            S       L    P E             +      F R   F  S +         W 
Sbjct: 361 SS-------LNVLEPAE------------YR----KMFDRLSVFPPSAHIPTILLSLIWF 397

Query: 443 AGS--ESFIVLN------ATKKQP----------FLDKLGTVEHDISLHGPPCSWAHLYA 484
                +  +V+N        +KQP          +L+    +E++ +LH           
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH----------- 446

Query: 485 SSSGRTML-HATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFN- 542
               R+++ H  + K +   D                  PP +     D      Y+++ 
Sbjct: 447 ----RSIVDHYNIPKTFDSDDLI----------------PPYL-----D-----QYFYSH 476

Query: 543 ----LGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHAS 598
               L   E   +M     ++L                   D  F+E       K  H  
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFL-------------------DFRFLE------QKIRH-- 509

Query: 599 DGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHP------------LPAVAEV 646
                     ++ N  G    TL   +  +K    + D+ P            LP + E 
Sbjct: 510 --------DSTAWNASGSILNTLQQLKF-YKP--YICDNDPKYERLVNAILDFLPKIEEN 558

Query: 647 SLSVTCSFPASIALLVDEPVNERKVIQTAAQADR 680
            +    +    IAL+ +   +E    +   Q  R
Sbjct: 559 LICSKYTDLLRIALMAE---DEAIFEEAHKQVQR 589

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3ncx_A Intimin, intimin adherence protein; intimin TIR, cell adhesion; 2.60A {Escherichia coli O157} PDB: 2zqk_A 3ncw_A 2zwk_A Length = 189	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1776
d1f00i2		89	b.1.14.1 (I:753-841) Intimin {Escherichia coli [Ta	2e-05

>d1f00i2 b.1.14.1 (I:753-841) Intimin {Escherichia coli [TaxId: 562]} Length = 89	Back information, alignment and structure


class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Invasin/intimin cell-adhesion fragments
family: Invasin/intimin cell-adhesion fragments
domain: Intimin
species: Escherichia coli [TaxId: 562]

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 315 GVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITA-SGVVQAKKPGKA 373
           G      LP     Y +V L A+G     +  Y W S++ A  S+ A SG V  K+ G  
Sbjct: 13  GTGVKGKLPTVWLQYGQVNLKASG----GNGKYTWRSANPAIASVDASSGQVTLKEKGTT 68

Query: 374 TVKVVS 379
           T+ V+S
Sbjct: 69  TISVIS 74

PyMOL of d1f00i2

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1776
d1f00i2		89	Intimin {Escherichia coli [TaxId: 562]}	98.27
d1f00i2		89	Intimin {Escherichia coli [TaxId: 562]}	96.28
d1cwva4		91	Invasin {Yersinia pseudotuberculosis [TaxId: 633]}	84.62

>d1f00i2 b.1.14.1 (I:753-841) Intimin {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Invasin/intimin cell-adhesion fragments
family: Invasin/intimin cell-adhesion fragments
domain: Intimin
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=1.2e-06  Score=62.14  Aligned_cols=59  Identities=37%  Similarity=0.505  Sum_probs=51.8

Q ss_pred             ECCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCEEEEEEC-CEEEEECCCCEEEEEEEECCCC
Q ss_conf             92385661268999992278899971699715951499900-7189934788189999911487
Q 000256          321 LLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITA-SGVVQAKKPGKATVKVVSIFDS  383 (1776)
Q Consensus       321 ~lP~~~~~~q~~~L~A~GGsg~~~~~y~WsSsn~~VatV~~-~Gvvta~~~G~t~I~a~d~~n~  383 (1776)
                      .+|.....+.+++|.++||.+    .|.|+|+|+.||+|+. .|++++.+.|+++|.|.+..+.
T Consensus        19 ~~~~~~~~~~~~~l~~~~~~~----~~twsSsd~~VAtVd~~~G~vta~~~G~a~Itat~~~g~   78 (89)
T d1f00i2          19 KLPTVWLQYGQVNLKASGGNG----KYTWRSANPAIASVDASSGQVTLKEKGTTTISVISSDNQ   78 (89)
T ss_dssp             SCCSEEETTCEEECCEESTTS----CEEEEESCTTTEEECTTTCEEEECSSSCEEEEEEETTTE
T ss_pred             CCCCEEEEEEEEEEEECCCCC----CEEEEECCCCEEEEECCCCEEEEEEEEEEEEEEEECCCC
T ss_conf             377356620589987736897----289997999999997898899996608999999979999

PyMOL of d1f00i2

>d1f00i2 b.1.14.1 (I:753-841) Intimin {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1cwva4 b.1.14.1 (A:796-886) Invasin {Yersinia pseudotuberculosis [TaxId: 633]}	Back information, alignment and structure