Citrus Sinensis ID: 000270
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1749 | 2.2.26 [Sep-21-2011] | |||||||
| Q8WWQ0 | 1821 | PH-interacting protein OS | yes | no | 0.319 | 0.306 | 0.317 | 2e-77 | |
| Q8VDD9 | 1821 | PH-interacting protein OS | yes | no | 0.319 | 0.306 | 0.315 | 2e-77 | |
| Q9NSI6 | 2320 | Bromodomain and WD repeat | no | no | 0.323 | 0.243 | 0.307 | 4e-77 | |
| Q921C3 | 2304 | Bromodomain and WD repeat | no | no | 0.329 | 0.25 | 0.308 | 2e-76 | |
| Q6RI45 | 1802 | Bromodomain and WD repeat | no | no | 0.329 | 0.320 | 0.301 | 1e-69 | |
| A2AHJ4 | 1799 | Bromodomain and WD repeat | no | no | 0.329 | 0.320 | 0.298 | 2e-68 | |
| Q54MP8 | 2200 | Bromodomain and WD repeat | yes | no | 0.154 | 0.122 | 0.264 | 1e-25 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | no | no | 0.215 | 0.247 | 0.244 | 2e-20 | |
| P25382 | 515 | Ribosome assembly protein | yes | no | 0.179 | 0.609 | 0.235 | 4e-20 | |
| P38129 | 798 | Transcription initiation | no | no | 0.110 | 0.241 | 0.285 | 3e-19 |
| >sp|Q8WWQ0|PHIP_HUMAN PH-interacting protein OS=Homo sapiens GN=PHIP PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 292 bits (747), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 222/700 (31%), Positives = 322/700 (46%), Gaps = 141/700 (20%)
Query: 51 EVYFLIMHFLSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLS 110
E+YFLI FL GPC + E+ E +LLPRR W G P +
Sbjct: 14 ELYFLIARFLEDGPCQQAAQVLIREVAEKELLPRRTD-W-------------TGKEHPRT 59
Query: 111 YNKLVERYPHIEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAA-DVPTLLGRGSFSLLSY 169
Y LV+ Y H+ DHL+++ +L ++ + P + V TLLG G SLL
Sbjct: 60 YQNLVKYYRHLAPDHLLQICHRL--------GPLLEQEIPQSVPGVQTLLGAGRQSLLRT 111
Query: 170 DRDKGQNEIDHPPAHMRWPHMYADQVRGLGLREIGGGF-----TRHHRAPSIRAACYAIA 224
++ H+ W +G L + G + PSI ++
Sbjct: 112 NKS---------CKHVVW--------KGSALAALHCGRPPESPVNYGSPPSIADTLFSRK 154
Query: 225 ----------KPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET 274
P+ + Q M+ KR+ GH ++VYC FDR+GR + TGSDD LVKIW+ +
Sbjct: 155 LNGKYRLERLVPTAVYQHMKMHKRILGHLSSVYCVTFDRTGRRIFTGSDDCLVKIWATDD 214
Query: 275 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIA 334
LA+ RGH +I+D+AV+ N ++A+ S D +IRVW L P++VL+GH+A++T++
Sbjct: 215 GRLLATLRGHAAEISDMAVNYENTMIAAGSCDKMIRVWCLRTCAPLAVLQGHSASITSLQ 274
Query: 335 FSPR-PGSVYQLLSSSDDGTC--RIWDARYSQFSPR--IYIPRPSDAVAGRNMAPSSSAG 389
FSP GS L S+ DGT +WDA + +PR + RP V
Sbjct: 275 FSPLCSGSKRYLSSTGADGTICFWLWDAGTLKINPRPAKFTERPRPGV------------ 322
Query: 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYV 449
Q+ C +F+A G TGS+D + RV+ S QP +I L H + V+ +
Sbjct: 323 ----QMICSSFSAGGMFLATGSTDHIIRVYFF------GSGQP-EKISELEFHTDKVDSI 371
Query: 450 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR 509
QFS ++RF V+ SRDG+A IW + +R K+
Sbjct: 372 QFSN--TSNRF------------------------VSGSRDGTARIW--QFKRREWKSIL 403
Query: 510 WTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 569
A P G +I T V M+ W + V+ A+ + + VWN+
Sbjct: 404 LDMATR--------PAGQNLQGIEDKI--TKMKVTMVAWDRHDNTVITAVNNMTLKVWNS 453
Query: 570 ADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR---------- 619
G L+H L GH + +VL+ HPF+PR+ SAG+DG IVWD+ G+ IR
Sbjct: 454 YTGQLIHVLMGHEDEVFVLEPHPFDPRVLFSAGHDGNVIVWDLARGVKIRSYFNMIEGQG 513
Query: 620 ---IYEISRFRDGASIILSDDVGQLYILNTGQGESQKDAKYDQ-FFLGDYRPLVQDTYGN 675
+++ DG +D G L I G S+ D DQ FF DYRPL++D
Sbjct: 514 HGAVFDCKCSPDGQHFACTDSHGHLLIFGFGSS-SKYDKIADQMFFHSDYRPLIRDANNF 572
Query: 676 VLDQETQLAPHRRNLQDP--LCDSAMIPYPEPYQTMYQQR 713
VLD++TQ APH L P L D P+P YQ + R
Sbjct: 573 VLDEQTQQAPH---LMPPPFLVDVDGNPHPSRYQRLVPGR 609
|
Probable regulator of the insulin and insulin-like growth factor signaling pathways. Stimulates cell proliferation through regulation of cyclin transcription and has an anti-apoptotic activity through AKT1 phosphorylation and activation. Plays a role in the regulation of cell morphology and cytoskeletal organization. Homo sapiens (taxid: 9606) |
| >sp|Q8VDD9|PHIP_MOUSE PH-interacting protein OS=Mus musculus GN=Phip PE=1 SV=2 | Back alignment and function description |
|---|
Score = 292 bits (747), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 221/700 (31%), Positives = 322/700 (46%), Gaps = 141/700 (20%)
Query: 51 EVYFLIMHFLSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLS 110
E+YFLI FL GPC + E+ E +LLPRR W G P +
Sbjct: 14 ELYFLIARFLEDGPCQQAAQVLIREVAEKELLPRRTD-W-------------TGKEHPRT 59
Query: 111 YNKLVERYPHIEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAA-DVPTLLGRGSFSLLSY 169
Y LV+ Y H+ DHL+++ +L ++ + P + V TLLG G SLL
Sbjct: 60 YQNLVKYYRHLAPDHLLQICHRL--------GPLLEQEIPQSVPGVQTLLGAGRQSLLRT 111
Query: 170 DRDKGQNEIDHPPAHMRWPHMYADQVRGLGLREIGGGF-----TRHHRAPSIRAACYAIA 224
++ H+ W +G L + G + PSI ++
Sbjct: 112 NKS---------CKHVVW--------KGSALAALHCGRPPESPVNYGSPPSIADTLFSRK 154
Query: 225 ----------KPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET 274
P+ + Q M+ KR+ GH ++VYC FDR+GR + TGSDD LVKIW+ +
Sbjct: 155 LNGKYRLERLVPTAVYQHMKMHKRILGHLSSVYCVTFDRTGRRIFTGSDDCLVKIWATDD 214
Query: 275 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIA 334
LA+ RGH +I+D+AV+ N ++A+ S D +IRVW L P++VL+GH+A++T++
Sbjct: 215 GRLLATLRGHAAEISDMAVNYENTMIAAGSCDKMIRVWCLRTCAPLAVLQGHSASITSLQ 274
Query: 335 FSPR-PGSVYQLLSSSDDGTC--RIWDARYSQFSPR--IYIPRPSDAVAGRNMAPSSSAG 389
FSP GS L S+ DGT +WDA + +PR + RP V
Sbjct: 275 FSPLCSGSKRYLSSTGADGTICFWLWDAGTLKINPRPTKFTERPRPGV------------ 322
Query: 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYV 449
Q+ C +F+A G TGS+D + RV+ S QP +I L H + V+ +
Sbjct: 323 ----QMICSSFSAGGMFLATGSTDHIIRVYFF------GSGQP-EKISELEFHTDKVDSI 371
Query: 450 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR 509
QFS ++RF V+ SRDG+A IW + +R K+
Sbjct: 372 QFSN--TSNRF------------------------VSGSRDGTARIW--QFKRREWKSIL 403
Query: 510 WTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 569
A P G +I T V M+ W + V+ A+ + + VWN+
Sbjct: 404 LDMATR--------PAGQNLQGIEDKI--TKMKVTMVAWDRHDNTVITAVNNMTLKVWNS 453
Query: 570 ADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR---------- 619
G L+H L GH + +VL+ HPF+PR+ SAG+DG IVWD+ G+ +R
Sbjct: 454 YTGQLIHVLMGHEDEVFVLEPHPFDPRVLFSAGHDGNVIVWDLARGVKVRSYFNMIEGQG 513
Query: 620 ---IYEISRFRDGASIILSDDVGQLYILNTGQGESQKDAKYDQ-FFLGDYRPLVQDTYGN 675
+++ DG +D G L I G S+ D DQ FF DYRPL++D
Sbjct: 514 HGAVFDCKCSPDGQHFACTDSHGHLLIFGFGSS-SKYDKIADQMFFHSDYRPLIRDANNF 572
Query: 676 VLDQETQLAPHRRNLQDP--LCDSAMIPYPEPYQTMYQQR 713
VLD++TQ APH L P L D P+P YQ + R
Sbjct: 573 VLDEQTQQAPH---LMPPPFLVDVDGNPHPSRYQRLVPGR 609
|
Probable regulator of the insulin and insulin-like growth factor signaling pathways. Stimulates cell proliferation through regulation of cyclin transcription and has an anti-apoptotic activity through AKT1 phosphorylation and activation. Plays a role in the regulation of cell morphology and cytoskeletal organization. Mus musculus (taxid: 10090) |
| >sp|Q9NSI6|BRWD1_HUMAN Bromodomain and WD repeat-containing protein 1 OS=Homo sapiens GN=BRWD1 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 291 bits (745), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 213/693 (30%), Positives = 325/693 (46%), Gaps = 128/693 (18%)
Query: 51 EVYFLIMHFLSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLS 110
E+YFLI +LS GPC R EL ++QLLP+R W G+E++ S
Sbjct: 17 ELYFLIARYLSAGPCRRAAQVLVQELEQYQLLPKRLD-W-------EGNEHNR------S 62
Query: 111 YNKLVERYPHIEKDHLVKLLKQL--IINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLS 168
Y +LV H+ DHL+++ +++ +++ P P+ + V +LLG G SLL
Sbjct: 63 YEELVLSNKHVAPDHLLQICQRIGPMLDKEIP---------PSISRVTSLLGAGRQSLLR 113
Query: 169 YDRD------KGQNEIDHPPAHM-RWPHMYADQVRGLGLREIGGGFTRHHRAPSIR-AAC 220
+D KG H R P M + L EI HR + +
Sbjct: 114 TAKDCRHTVWKGSA---FAALHRGRPPEMPVNYGSPPNLVEI-------HRGKQLTGCST 163
Query: 221 YAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS 280
++ A P TM Q ++ +R+ GH +AVYC FDR+G + TGSDD LVKIWS L++
Sbjct: 164 FSTAFPGTMYQHIKMHRRILGHLSAVYCVAFDRTGHRIFTGSDDCLVKIWSTHNGRLLST 223
Query: 281 CRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRP- 339
RGH +I+D+AV+ N ++A+ S D IIRVW L P++VL+GHT ++T++ FSP
Sbjct: 224 LRGHSAEISDMAVNYENTMIAAGSCDKIIRVWCLRTCAPVAVLQGHTGSITSLQFSPMAK 283
Query: 340 GSVYQLLSSSDDGTCRI--WDARYSQFSPR--IYIPRPSDAVAGRNMAPSSSAGPQSHQI 395
GS ++S+ DGT WD +FSPR + +P V Q+
Sbjct: 284 GSQRYMVSTGADGTVCFWQWDLESLKFSPRPLKFTEKPRPGV----------------QM 327
Query: 396 FCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCA 455
C +F+ G TGS+D + R++ + +I L H + V+ +QF C
Sbjct: 328 LCSSFSVGGMFLATGSTDHVIRMYFL-------GFEAPEKIAELESHTDKVDSIQF--CN 378
Query: 456 VASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYH 515
RF ++ SRDG+A IW R + ++ A
Sbjct: 379 NGDRF------------------------LSGSRDGTARIW--RFEQLEWRSILLDMATR 412
Query: 516 LKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLV 575
+ +R + P+ V MI W+ ++ V+ A+ D + VWN+ G L+
Sbjct: 413 I---------SGDLSSEEERFM-KPK-VTMIAWNQNDSIVVTAVNDHVLKVWNSYTGQLL 461
Query: 576 HSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR-------------IYE 622
H+L GH + +VL+ HPF+ RI +SAG+DG +WDI +G ++ +++
Sbjct: 462 HNLMGHADEVFVLETHPFDSRIMLSAGHDGSIFIWDITKGTKMKHYFNMIEGQGHGAVFD 521
Query: 623 ISRFRDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQ 682
+DG +D G L I G + + FF DYRPL++D+ VLD++TQ
Sbjct: 522 CKFSQDGQHFACTDSHGHLLIFGFGCSKPYEKIPDQMFFHTDYRPLIRDSNNYVLDEQTQ 581
Query: 683 LAPHRRNLQDP--LCDSAMIPYPEPYQTMYQQR 713
APH L P L D P+P YQ + R
Sbjct: 582 QAPH---LMPPPFLVDVDGNPHPTKYQRLVPGR 611
|
May be a transcriptional activator. May be involved in chromatin remodeling (By similarity). Plays a role in the regulation of cell morphology and cytoskeletal organization. Required in the control of cell shape. Homo sapiens (taxid: 9606) |
| >sp|Q921C3|BRWD1_MOUSE Bromodomain and WD repeat-containing protein 1 OS=Mus musculus GN=Brwd1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 289 bits (739), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 217/704 (30%), Positives = 326/704 (46%), Gaps = 128/704 (18%)
Query: 40 PAELDVDVDLREVYFLIMHFLSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGD 99
PA V + E+YFLI +LS GPC R EL ++QLLP+R W G+
Sbjct: 6 PARRPVPLIESELYFLIARYLSAGPCRRAAQVLVQELEQYQLLPKRLD-W-------EGN 57
Query: 100 ENDDGMSFPLSYNKLVERYPHIEKDHLVKLLKQL--IINTSSPSRAMIGGDAPNAADVPT 157
E++ SY +LV H+ DHL+++ +++ +++ P P+ + V +
Sbjct: 58 EHNR------SYEELVLSNKHVAPDHLLQICQRIGPMLDKEVP---------PSISRVTS 102
Query: 158 LLGRGSFSLLSYDRD------KGQNEIDHPPAHM-RWPHMYADQVRGLGLREIGGGFTRH 210
LLG G SLL +D KG H R P M + L EI
Sbjct: 103 LLGAGRQSLLRTAKDCRHTVWKGSA---FAALHRGRPPEMPVNYGPPPSLVEI------- 152
Query: 211 HRAPSIR-AACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKI 269
HR + + ++ A P TM Q ++ +R+ GH +AVYC FDR+G + TGSDD LVKI
Sbjct: 153 HRGRQLTGCSTFSTAFPGTMYQHIKMHRRILGHLSAVYCVAFDRTGHRIFTGSDDCLVKI 212
Query: 270 WSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAA 329
WS L++ RGH +I+D+AV+ N L+A+ S D IIRVW L P++VL+GHT +
Sbjct: 213 WSTHNGRLLSTLRGHSAEISDMAVNYENTLIAAGSCDKIIRVWCLRTCAPVAVLQGHTGS 272
Query: 330 VTAIAFSPRP-GSVYQLLSSSDDGTCRI--WDARYSQFSPR--IYIPRPSDAVAGRNMAP 384
+T++ FSP G ++S+ DGT WD +FSPR + +P V
Sbjct: 273 ITSLQFSPMAKGPQRYMVSTGADGTVCFWQWDLESLKFSPRPLKFTEKPRPGV------- 325
Query: 385 SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN 444
Q+ C +F+ G TGS+D + R++ D P +I L H +
Sbjct: 326 ---------QMLCSSFSVGGMFLATGSTDHVIRMYFL------GFDAP-EKIAELESHTD 369
Query: 445 DVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH 504
V+ +QF C RF ++ SRDG+A IW
Sbjct: 370 KVDSIQF--CNNGDRF------------------------LSGSRDGTARIW-------- 395
Query: 505 PKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRI 564
R+ Q + + P+ V MI W+ D+ V+ A+ D +
Sbjct: 396 ----RFEQLEWRSILLDMSARISGDTSSEEERFMKPK-VTMIAWNQDDSTVVTAVNDHVL 450
Query: 565 CVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR----- 619
VW++ G L+H+L GH + +VL+ HPF+ RI +SAG+DG +WDI +GI ++
Sbjct: 451 KVWSSYTGQLLHNLLGHADEVFVLETHPFDSRIMLSAGHDGSIFIWDITKGIKMKHYFNM 510
Query: 620 --------IYEISRFRDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQD 671
+++ +DG +D G L I G + + FF DYRPL++D
Sbjct: 511 IEGQGHGAVFDCKFSQDGQHFACTDSHGHLLIFGFGCSKPYEKIPDQMFFHTDYRPLIRD 570
Query: 672 TYGNVLDQETQLAPHRRNLQDP--LCDSAMIPYPEPYQTMYQQR 713
+ VLD++TQ APH L P L D P+P +Q + R
Sbjct: 571 SNNYVLDEQTQQAPH---LMPPPFLVDVDGNPHPTKFQRLVPGR 611
|
May be a transcriptional activator. May be involved in chromatin remodeling. Plays a role in the regulation of cell morphology and cytoskeletal organization. Required in the control of cell shape. Mus musculus (taxid: 10090) |
| >sp|Q6RI45|BRWD3_HUMAN Bromodomain and WD repeat-containing protein 3 OS=Homo sapiens GN=BRWD3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 266 bits (680), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 206/684 (30%), Positives = 311/684 (45%), Gaps = 107/684 (15%)
Query: 51 EVYFLIMHFLSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLS 110
E+Y+LI FL +GPC+++ EL EHQL+PRR W +G S
Sbjct: 11 ELYYLIARFLQSGPCNKSAQVLVQELEEHQLIPRRLD-W-------------EGKEHRRS 56
Query: 111 YNKLVERYPHIEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAA-DVPTLLGRGSFSLLSY 169
+ LV HI D+L+K+ +++ ++ + P + V TLLG G SLL
Sbjct: 57 FEDLVAANAHIPPDYLLKICERI--------GPLLDKEIPQSVPGVQTLLGVGRQSLLRD 108
Query: 170 DRDKGQ---NEIDHPPAHM-RWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAK 225
+D N H R P + + V+ + I R S +
Sbjct: 109 AKDCKSTLWNGSAFAALHRGRPPELPVNYVKPPNVVNITSA--RQLTGCSRFGHIF---- 162
Query: 226 PSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHE 285
PS+ Q ++ KR+ GH ++VYC FDRSGR + TGSDD LVKIW+ + LA+ RGH
Sbjct: 163 PSSAYQHIKMHKRILGHLSSVYCVAFDRSGRRIFTGSDDCLVKIWATDDGRLLATLRGHS 222
Query: 286 GDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP-RPGSVYQ 344
+I+D+AV+ N L+A+ S D ++RVW L P++VL+GH+A++T+I F P G+
Sbjct: 223 AEISDMAVNYENTLIAAGSCDKVVRVWCLRTCAPVAVLQGHSASITSIQFCPSTKGTNRY 282
Query: 345 LLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG 404
L S+ DGT W R R + + + P QI C +F++ G
Sbjct: 283 LTSTGADGTICFWQWHVKTMKFR-----------DRPVKFTERSRP-GVQISCSSFSSGG 330
Query: 405 TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLAD 464
TGS+D + R++ S+ P +I L H + V VQF + RF
Sbjct: 331 MFITTGSTDHVIRIYYL------GSEVP-EKIAELESHTDKVVAVQFCNNGDSLRF---- 379
Query: 465 SSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMP 524
V+ SRDG+A IW + W ++ L +
Sbjct: 380 --------------------VSGSRDGTARIW-------QYQQQEW-KSIVLDMATKMTG 411
Query: 525 PQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTES 584
P G + T V M+ W + V+ A+ + + VWN+ G L+H+L+GH +
Sbjct: 412 NNLPSGEDK----ITKLKVTMVAWDRYDTTVITAVNNFLLKVWNSITGQLLHTLSGHDDE 467
Query: 585 TYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR-------------IYEISRFRDGAS 631
+VL+ HPF+ RI +SAG+DG +WD+ G IR +++ DG
Sbjct: 468 VFVLEAHPFDQRIILSAGHDGNIFIWDLDRGTKIRNYFNMIEGQGHGAVFDCKFSPDGNH 527
Query: 632 IILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQ 691
+D G L + G + + FF DYRPL++D VLD++TQ APH L
Sbjct: 528 FACTDSHGHLLLFGFGCSKYYEKIPDQMFFHTDYRPLIRDANNYVLDEQTQQAPH---LM 584
Query: 692 DP--LCDSAMIPYPEPYQTMYQQR 713
P L D P+P +Q + R
Sbjct: 585 PPPFLVDVDGNPHPTKFQRLVPGR 608
|
Plays a role in the regulation of cell morphology and cytoskeletal organization. Required in the control of cell shape. Homo sapiens (taxid: 9606) |
| >sp|A2AHJ4|BRWD3_MOUSE Bromodomain and WD repeat-containing protein 3 OS=Mus musculus GN=Brwd3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 262 bits (670), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 204/684 (29%), Positives = 310/684 (45%), Gaps = 107/684 (15%)
Query: 51 EVYFLIMHFLSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLS 110
E+Y+LI FL +GPC+++ EL EHQL+PRR W +G S
Sbjct: 11 ELYYLIARFLQSGPCNKSAQVLVQELEEHQLIPRRLD-W-------------EGKEHRRS 56
Query: 111 YNKLVERYPHIEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAA-DVPTLLGRGSFSLLSY 169
+ LV HI D+L+K+ +++ ++ + P + V TLLG G SLL
Sbjct: 57 FEDLVAANAHIPPDYLLKICERI--------GPLLDKEIPQSVPGVQTLLGVGRQSLLRD 108
Query: 170 DRDKGQ---NEIDHPPAHM-RWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAK 225
+D N H R P + + V+ + I R S + +
Sbjct: 109 AKDCKSTLWNGSAFAALHRGRPPELPVNYVKPPNVVNITSA--RQLTGCSRFSHVF---- 162
Query: 226 PSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHE 285
PS+ Q ++ KR+ GH ++VYC FDRSGR + TGSDD LVKIW+ + LA+ RGH
Sbjct: 163 PSSAYQHIKMHKRILGHLSSVYCVAFDRSGRRIFTGSDDCLVKIWATDDGRLLATLRGHS 222
Query: 286 GDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP-RPGSVYQ 344
+I+D+AV+ N L+A+ S D ++RVW L P++VL+GH+A++T+I F P G+
Sbjct: 223 AEISDMAVNYENTLIAAGSCDKVVRVWCLRTCAPVAVLQGHSASITSIQFCPSTKGTTRY 282
Query: 345 LLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG 404
L S+ DGT W R R + + + P QI C +F++ G
Sbjct: 283 LTSTGADGTICFWQWHVKTMKFR-----------DRPVKFTERSRP-GVQISCSSFSSGG 330
Query: 405 TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLAD 464
TGS+D + R++ S+ P +I L H + V VQF + RF
Sbjct: 331 MFITTGSTDHVIRIYYL------GSEIP-EKIAELESHTDKVVAVQFCNNGDSLRF---- 379
Query: 465 SSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMP 524
V+ SRDG+A IW + ++ K+ A +
Sbjct: 380 --------------------VSGSRDGTARIW--QYQQQEWKSIVLDMATKMS------- 410
Query: 525 PQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTES 584
T V M+ W + V+ A+ + + VWN+ G L+H+L+GH +
Sbjct: 411 ---GNNLTSAEDKVTKLKVTMVAWDRYDTTVITAVNNFLLKVWNSVTGQLLHTLSGHDDE 467
Query: 585 TYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR-------------IYEISRFRDGAS 631
+VL+ HPF+ RI +SAG+DG +WD+ G IR +++ DG
Sbjct: 468 VFVLEAHPFDQRIILSAGHDGNIFIWDLDRGTKIRNYFNMIEGQGHGAVFDCKFSPDGNH 527
Query: 632 IILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQ 691
+D G L + G + + FF DYRPL++D VLD++TQ APH L
Sbjct: 528 FACTDSHGHLLLFGFGCSKYYEKIPDQMFFHTDYRPLIRDANNYVLDEQTQQAPH---LM 584
Query: 692 DP--LCDSAMIPYPEPYQTMYQQR 713
P L D P+P +Q + R
Sbjct: 585 PPPFLVDVDGNPHPTKFQRLVPGR 608
|
Plays a role in the regulation of cell morphology and cytoskeletal organization. Required in the control of cell shape. Mus musculus (taxid: 10090) |
| >sp|Q54MP8|Y5837_DICDI Bromodomain and WD repeat-containing DDB_G0285837 OS=Dictyostelium discoideum GN=DDB_G0285837 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 146/333 (43%), Gaps = 63/333 (18%)
Query: 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQ 450
++++I N GT+ V S D+ ++W+ P ++ L GH + +Q
Sbjct: 549 KTNEITGTTMNKGGTLIV-ASVDSSLKIWSTLF-------NPPKLVNTLEGHPTTILALQ 600
Query: 451 FSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510
+S + D IV+ S DG+ IIW H +W
Sbjct: 601 YSHGS--------------------------DAIVSGSYDGTVIIW------RHSGGPKW 628
Query: 511 TQA-YHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 569
+++K P P+ ++ + ++WS D+RF++ + I VWN+
Sbjct: 629 DHVIFNIK---NTQRPNQANSHPK-KVARSKATFKNVIWSHDDRFIITTDYNM-IRVWNS 683
Query: 570 ADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISR--FR 627
DGS + HT YV HPF+ R+ MS+GYD + I+W I G I+ + + F+
Sbjct: 684 LDGSFHLEMAEHTSEVYVTSCHPFDSRLIMSSGYDSQVILWSIETGEIIKKFVLQEPGFQ 743
Query: 628 ----------DGASIILSDDVGQLYILNTGQGESQKDAKY----DQFFLGDYRPLVQDTY 673
DG I+++ G+ ++ G G + K +Q+FL DY PL++D
Sbjct: 744 CQILDGCFSPDGQKFIVTNSTGKWFMFELGLGSDINNLKKLVPNEQYFLTDYHPLIRDAN 803
Query: 674 GNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPY 706
GNVLD+ TQ PH + L + +PYP+ Y
Sbjct: 804 GNVLDELTQTPPHLM-PRAMLVNYQGLPYPDHY 835
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 110/449 (24%), Positives = 183/449 (40%), Gaps = 72/449 (16%)
Query: 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA 298
++GH + V +F G + +G DD++V++W + + CL + +G+ + L S N
Sbjct: 1070 LQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPNGV 1129
Query: 299 LVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358
+A+ S+D I+R+W + + L+GHT V A+AFSP + L S S D T R+WD
Sbjct: 1130 TLANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAVAFSPDGAT---LASGSGDQTVRLWD 1186
Query: 359 ARYSQ-----------FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFC---------- 397
S+ + ++ P S +G + S + C
Sbjct: 1187 ISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVN 1246
Query: 398 -CAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS--GC 454
FN +G++ +GSSD R+W+ + GH N VN V F+ G
Sbjct: 1247 SVVFNPDGSMLASGSSDKTVRLWDISSSKC---------LHTFQGHTNWVNSVAFNPDGS 1297
Query: 455 AVAS-------RFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAI----------IWI 497
+AS R SSK T + SW VT S DG+ + +W
Sbjct: 1298 MLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSS---VTFSPDGTMLASGSDDQTVRLWS 1354
Query: 498 PRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ---------RILPTPRG----VN 544
S T + P G + + L T +G V
Sbjct: 1355 ISSGECLYTFLGHTNWVGSVIFSPDGAILASGSGDQTVRLWSISSGKCLYTLQGHNNWVG 1414
Query: 545 MIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYD 604
IV+S D + + D + +WN + G +++L GH S V V + + +++G D
Sbjct: 1415 SIVFSPDGTLLASGSDDQTVRLWNISSGECLYTLHGHINS--VRSVAFSSDGLILASGSD 1472
Query: 605 GKTI-VWDIWEGIPIRIYEISRFRDGASI 632
+TI +WD+ G I+ + + +G +I
Sbjct: 1473 DETIKLWDVKTGECIKTLKSEKIYEGMNI 1501
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|P25382|NLE1_YEAST Ribosome assembly protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSA4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 93/395 (23%), Positives = 167/395 (42%), Gaps = 81/395 (20%)
Query: 239 VRGHRNAVYCAIFD-RSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNN 297
+ GH + + C+ F + ++TG+ D +IW +T + + +GH + ++ S +
Sbjct: 139 IAGHGSTILCSAFAPHTSSRMVTGAGDNTARIWDCDTQTPMHTLKGHYNWVLCVSWSPDG 198
Query: 298 ALVASASNDCIIRVWRLPDGLPIS-VLRGHTAAVTAIAFSP----RPGSVYQLLSSSDDG 352
++A+ S D IR+W G + LRGH+ +T++++ P +PGS +L SSS DG
Sbjct: 199 EVIATGSMDNTIRLWDPKSGQCLGDALRGHSKWITSLSWEPIHLVKPGSKPRLASSSKDG 258
Query: 353 TCRIWD--ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG 410
T +IWD +R Q++ ++G ++ + C + G ++ +G
Sbjct: 259 TIKIWDTVSRVCQYT-----------MSG-----------HTNSVSCVKWGGQGLLY-SG 295
Query: 411 SSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDS 470
S D RVW D + I++L H + VN++ S + + K+ S
Sbjct: 296 SHDRTVRVW--------DINSQGRCINILKSHAHWVNHLSLSTDYALRIGAFDHTGKKPS 347
Query: 471 TPK------FKN-SWFCHDN------IVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLK 517
TP+ +N C N +VT S D + +W P
Sbjct: 348 TPEEAQKKALENYEKICKKNGNSEEMMVTASDDYTMFLWNPLKSTK-------------- 393
Query: 518 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHS 577
P R+ + VN + +S D R++++A D I +W+ DG + +
Sbjct: 394 --------------PIARMTGHQKLVNHVAFSPDGRYIVSASFDNSIKLWDGRDGKFIST 439
Query: 578 LTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612
GH S Y + + R+ +S D VWD+
Sbjct: 440 FRGHVASVYQV-AWSSDCRLLVSCSKDTTLKVWDV 473
|
Involved in processing and efficient intra-nuclear transport or pre-60S ribosomal subunits. Forms a complex with REA1 which is essential for ATP-dependent dissociation of a group of nonribosomal factors from the pre-60S particle. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|P38129|TAF5_YEAST Transcription initiation factor TFIID subunit 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAF5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 104/221 (47%), Gaps = 28/221 (12%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSN 296
K + GH VY F +Y+++GS+D+ V++WSM+T L S +GH + D++ S
Sbjct: 519 KTLVGHSGTVYSTSFSPDNKYLLSGSEDKTVRLWSMDTHTALVSYKGHNHPVWDVSFSPL 578
Query: 297 NALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356
A+AS+D R+W P+ + GH V ++F P V+ + S D TCR+
Sbjct: 579 GHYFATASHDQTARLWSCDHIYPLRIFAGHLNDVDCVSFHPNGCYVF---TGSSDKTCRM 635
Query: 357 WDARYSQFSPRIYI----PRPSDAVA--GRNMAPSSS------------------AGPQS 392
WD S R+++ P S AV GR ++ S G
Sbjct: 636 WDVSTGD-SVRLFLGHTAPVISIAVCPDGRWLSTGSEDGIINVWDIGTGKRLKQMRGHGK 694
Query: 393 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN 433
+ I+ +++ G V ++G +D RVW+ K T+ S +P+
Sbjct: 695 NAIYSLSYSKEGNVLISGGADHTVRVWDLKKATTEPSAEPD 735
|
Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modification (histone acetylation by TAF1), facilitation of DNA opening and initiation of transcription. SAGA is involved in RNA polymerase II-dependent transcriptional regulation of approximately 10% of yeast genes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction (SPT3, SPT8 and SPT20) and promoter selectivity, interaction with transcription activators (GCN5, ADA2, ADA3 and TRA1), and chromatin modification through histone acetylation (GCN5) and deubiquitination (UBP8). SAGA acetylates nucleosomal histone H3 to some extent (to form H3K9ac, H3K14ac, H3K18ac and H3K23ac). SAGA interacts with DNA via upstream activating sequences (UASs). SALSA, an altered form of SAGA, may be involved in positive transcriptional regulation. SLIK is proposed to have partly overlapping functions with SAGA. It preferentially acetylates methylated histone H3, at least after activation at the GAL1-10 locus. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1749 | ||||||
| 225431924 | 1756 | PREDICTED: uncharacterized protein LOC10 | 0.980 | 0.976 | 0.710 | 0.0 | |
| 356558137 | 1773 | PREDICTED: uncharacterized protein LOC10 | 0.970 | 0.957 | 0.624 | 0.0 | |
| 356532519 | 1777 | PREDICTED: uncharacterized protein LOC10 | 0.973 | 0.958 | 0.632 | 0.0 | |
| 225437555 | 1766 | PREDICTED: uncharacterized protein LOC10 | 0.969 | 0.960 | 0.612 | 0.0 | |
| 449433431 | 1729 | PREDICTED: uncharacterized protein LOC10 | 0.965 | 0.976 | 0.603 | 0.0 | |
| 42568419 | 1677 | WD40/YVTN repeat and Bromo-WDR9-I-like d | 0.935 | 0.976 | 0.588 | 0.0 | |
| 297795697 | 1662 | transducin family protein [Arabidopsis l | 0.926 | 0.974 | 0.589 | 0.0 | |
| 296083262 | 1569 | unnamed protein product [Vitis vinifera] | 0.668 | 0.745 | 0.726 | 0.0 | |
| 357449001 | 1844 | Bromodomain and WD repeat-containing pro | 0.967 | 0.918 | 0.522 | 0.0 | |
| 356501869 | 1719 | PREDICTED: uncharacterized protein LOC10 | 0.926 | 0.942 | 0.533 | 0.0 |
| >gi|225431924|ref|XP_002277060.1| PREDICTED: uncharacterized protein LOC100248159 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2359 bits (6114), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1264/1780 (71%), Positives = 1428/1780 (80%), Gaps = 65/1780 (3%)
Query: 1 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFL 60
MAL+KYIPS DAPS +MKPLSFSSKV E QLA + S + DVD+DLREVYFLIMHFL
Sbjct: 1 MALQKYIPSGDAPSVSMKPLSFSSKVQEKVQLADPEGSPTMDADVDIDLREVYFLIMHFL 60
Query: 61 STGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPH 120
S GPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGL SGDENDDG SFPLSYNKLVERYPH
Sbjct: 61 SAGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLRSGDENDDGSSFPLSYNKLVERYPH 120
Query: 121 IEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEIDH 180
I KDHLVKLLKQLI++T+ PS+ MI G+ PNAADVPTLLG GSFSLL D DKG NE++
Sbjct: 121 IGKDHLVKLLKQLILSTTHPSQGMIRGNVPNAADVPTLLGTGSFSLLGNDMDKGHNEVNP 180
Query: 181 PPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVR 240
PP HMRWPHM ADQVRGL LREIGGGFTRH+RAPSIRAACYA+AKPSTMVQKMQNIK++R
Sbjct: 181 PPIHMRWPHMQADQVRGLSLREIGGGFTRHNRAPSIRAACYAVAKPSTMVQKMQNIKKLR 240
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV 300
GHRNAVYCAIFDR+GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV
Sbjct: 241 GHRNAVYCAIFDRTGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV 300
Query: 301 ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
AS+SNDCIIRVWRLPDGLPISVLRGHT AVTAIAFSPRP SVYQLLSSSDDGTCRIWDAR
Sbjct: 301 ASSSNDCIIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSSVYQLLSSSDDGTCRIWDAR 360
Query: 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLAR--- 417
YSQFSPRIY+PRP D++AG+N PSSS GPQSHQIFCCAFNANGTVFVTGSSDTLAR
Sbjct: 361 YSQFSPRIYVPRPPDSIAGKNNVPSSSNGPQSHQIFCCAFNANGTVFVTGSSDTLARVHL 420
Query: 418 ---VWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 474
VWNACK N D+SDQPNHE+D+LSGHENDVNYVQFSGCAV+SRFS+A+SSKE++ PKF
Sbjct: 421 MISVWNACKSNPDESDQPNHEMDILSGHENDVNYVQFSGCAVSSRFSVAESSKEENVPKF 480
Query: 475 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ 534
KNSWF HDNIVTCSRDGSAIIWIPRSRRSH K RWT+AYHLKVPPPPMPPQPPRGGPRQ
Sbjct: 481 KNSWFTHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPMPPQPPRGGPRQ 540
Query: 535 RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN 594
RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA DGSLVHSLTGHTESTYVLDVHPFN
Sbjct: 541 RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHTESTYVLDVHPFN 600
Query: 595 PRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR--------DGASIILSDDVGQLYILNT 646
PRIAMSAGYDGKTIVWDIWEG PIRIY+ +RF+ DG SIILSDDVGQLYIL+T
Sbjct: 601 PRIAMSAGYDGKTIVWDIWEGTPIRIYDTARFKLVDGKFSPDGTSIILSDDVGQLYILST 660
Query: 647 GQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPY 706
GQGESQKDA YDQFFLGDYRPL+QDTYGNVLDQETQLAP+RRN+QD LCD+ MIPYPEPY
Sbjct: 661 GQGESQKDAMYDQFFLGDYRPLIQDTYGNVLDQETQLAPYRRNMQDLLCDATMIPYPEPY 720
Query: 707 QTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWE 766
Q+MYQQRRLGALGIEWRPSSL+LAVGPDF+LDQ YQ+ PL DLDV+IDPLPEFIDVMDWE
Sbjct: 721 QSMYQQRRLGALGIEWRPSSLRLAVGPDFNLDQDYQMLPLPDLDVLIDPLPEFIDVMDWE 780
Query: 767 PENEVQSDDNDSEYNVAEEYST-EEKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRK 825
PENEVQ+DD DSEYNV EEYST E+GSLSS SSGD ECSAEDS+ + DGLRRSKRK
Sbjct: 781 PENEVQTDDTDSEYNVTEEYSTGGEQGSLSSNSSGDPECSAEDSDVENSHKDGLRRSKRK 840
Query: 826 KQKAEVEIMTSSGRRVKRRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRA 885
KQKAE EIMT SGRRVKRR LDE +GN+ N RTRKS + +K S + SS SKSLRPQRA
Sbjct: 841 KQKAETEIMTFSGRRVKRRNLDEFDGNSLRSN-RTRKSRSGRKVSHKNSSKSKSLRPQRA 899
Query: 886 AARNARSFFSKITGASTDGEDVDGSEGELSESESDLQDSYIESEESGRSLLNEQRKHSKG 945
AARNA + FS++ G STDGED DGSEG+LSESES L+DS IES+ES SL NEQ KHSKG
Sbjct: 900 AARNALTLFSRMKGTSTDGEDEDGSEGDLSESESSLEDSNIESDESDGSLQNEQCKHSKG 959
Query: 946 KGISLDDSEDVTKL-DTPESHVNAG-IRRLVLKLPVRDSNKHELQERTSDKCNQLVSVIG 1003
K +SLD+ ED+ K + PES +NAG RRLVLK P+RDSN+ L NQ ++G
Sbjct: 960 KEVSLDEFEDMDKQHEHPESCMNAGNRRRLVLKFPIRDSNRLLLAPE-----NQ-ADLVG 1013
Query: 1004 TSSEAHQEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKI 1063
+SS+A QEA+E N N +S SS DANC +ERR RGQ +K+ED+L+L GYKDGKI
Sbjct: 1014 SSSKAPQEASEVNRNHLSSQDLGYSSSDANCNRIERRERGQPEKIEDHLDLFEGYKDGKI 1073
Query: 1064 RWGGVRARSSKRLKIGEMMPLDANNGSGIHLDDDKEKESEVNGHVKPEKDGIDISCGEEI 1123
RWGGV+AR+SKRL++ E MP D + S +D E+ +NG +PEK+ IS EI
Sbjct: 1074 RWGGVKARTSKRLRVVEPMPSDTDARSRQCIDGHDATENTINGFQEPEKNYDRISPHSEI 1133
Query: 1124 TNCGDNTDEVPLKNVKNLSGENNDVYSGDASCK-EQQSGFSELNYYDE-SKCVNTTDEDT 1181
+ T ++ N ++ N V DA+ ++ S F+E YDE K VN DT
Sbjct: 1134 KYHVEETGKMAHMNGQHFG--NGAVEGLDATSNGKKHSSFNECMNYDEPPKQVNMVAGDT 1191
Query: 1182 TPYPNHLQNGTIQPSELKEILTPVSTKLRIRSKRILRDAD----------VENQNNG-CD 1230
NGT P LKE T STKLRIRSK+IL D + VE+ +NG CD
Sbjct: 1192 AASSVQHSNGTDHPPHLKESSTS-STKLRIRSKKILEDPEIPSDPKIKSSVEDWSNGRCD 1250
Query: 1231 ALHGSSLDIKPNSLPEVLESDGTNRTSSDRGA-DGSQRLNAQIDSTSEHDPLGSHSHSHD 1289
L S L+I EV + D T+R SD G +G + A I+ S S D
Sbjct: 1251 TLSESQLEIA-----EVPDCDDTDRPHSDHGDWNGLLKSEAAIEQNSR-------SVLQD 1298
Query: 1290 PLGSHSHSHSRKMFNVVYRRSKTNRDRTNSEGDGGGVGESTLNANNNN------FHESAT 1343
G +SH ++ KM+N VYRRS++ R RTNSEG+GGG+ EST NA+N+N FHE+ T
Sbjct: 1299 SQGLYSHVNN-KMYNAVYRRSRSYRTRTNSEGEGGGMEESTSNASNHNLDSGMDFHEATT 1357
Query: 1344 DGSRRTRSMGLKTTTCDPDNVSSNLRLEQHNQPEDMYSGHNR-STSRC-QLPHEEWGSSS 1401
DG+RRTRSMGLK TT DPD SNL+L + ED ++ S +R +LP EEW SSS
Sbjct: 1358 DGARRTRSMGLKATTRDPDVTCSNLKLRLGHGSEDTLKSVDKFSVNRSDELPCEEWMSSS 1417
Query: 1402 KMTVGLRSTRNRRTSYLFCDS--SPIDRRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEV 1459
+MTVGLRS RNRR SY D+ SP++RRK HQS +K SWLMLS H E RYIPQLGDEV
Sbjct: 1418 RMTVGLRSARNRRASYHVRDTSPSPMERRKPHQSSKKVSWLMLSMHVE-PRYIPQLGDEV 1476
Query: 1460 VYLRQGHQEYINYSGSREVGPWITVKGNIRAVEFCKVESLEYATASGSGDSCCKMTLKFI 1519
VYLRQGHQEYI YSGS E GPW +VKG IRAVEFCKVE LEY+ +GSGDSCCKMTL+F+
Sbjct: 1477 VYLRQGHQEYITYSGSHEAGPWTSVKGIIRAVEFCKVEGLEYSPFAGSGDSCCKMTLQFV 1536
Query: 1520 DPTSSVSNMTFRLTLPEVTGFPDFLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWW 1579
DPTS V TF+LTLPEVT FPDFLVERTR+DAAIQRNWT RDKC+VWWKNE +EDGSWW
Sbjct: 1537 DPTSHVFGKTFKLTLPEVTSFPDFLVERTRYDAAIQRNWTSRDKCRVWWKNEGEEDGSWW 1596
Query: 1580 DGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFDSDTQWEQPRIDDDNRNK 1639
DGR+LSVK +S EFPDSPW+RY ++Y++EPTETHLHSPWEL+D TQWEQP IDD++RNK
Sbjct: 1597 DGRILSVKARSPEFPDSPWDRYVIRYRSEPTETHLHSPWELYDIGTQWEQPHIDDESRNK 1656
Query: 1640 LLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEA 1699
LLS+ AKLEQS ++ QD YG+QKLKQVSQK+NF NRFPVPLSL+VIQSRL+N YYR +EA
Sbjct: 1657 LLSSLAKLEQSGDKPQDYYGIQKLKQVSQKSNFLNRFPVPLSLEVIQSRLKNQYYRSMEA 1716
Query: 1700 VKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1739
VKHD+ VMLSNAE+YF +N +LS K++RLS+ TR LSS+
Sbjct: 1717 VKHDVKVMLSNAETYFVKNAELSMKVRRLSEWFTRMLSSI 1756
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356558137|ref|XP_003547364.1| PREDICTED: uncharacterized protein LOC100818665 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2139 bits (5542), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1132/1814 (62%), Positives = 1358/1814 (74%), Gaps = 116/1814 (6%)
Query: 1 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFL 60
MAL+KY PS +APS MK LSFSSKV + A+L ++ + +DVD+DLRE+YFLIMHFL
Sbjct: 1 MALQKYAPSGNAPSVNMKHLSFSSKVPKKAELDEANLNH--NMDVDIDLREIYFLIMHFL 58
Query: 61 STGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPH 120
S GPCH+T+ QFWNELLEHQLLPRRYHAWYSR+G SGD++DDG+SFPL+YN LVERY H
Sbjct: 59 SAGPCHKTHLQFWNELLEHQLLPRRYHAWYSRTGACSGDKDDDGLSFPLNYNMLVERYSH 118
Query: 121 IEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEIDH 180
IEKDHLVKLLKQL++NT+SPS M G+APNAADVPTLLG GSFSLLSYDRDK E+
Sbjct: 119 IEKDHLVKLLKQLLLNTASPSLGMNLGNAPNAADVPTLLGSGSFSLLSYDRDK-MKEVKW 177
Query: 181 PPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVR 240
PP HMRWPHM A+QV GL LREIGGGF RHHRAPSIRAACYAIAKPSTMVQKMQNIKR+R
Sbjct: 178 PPPHMRWPHMKANQVHGLNLREIGGGFPRHHRAPSIRAACYAIAKPSTMVQKMQNIKRLR 237
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV 300
GHRNAVYCAIFDR+GRYVITGSDDRLVKIWSMETAYCLASCRGH+GDITDLAVSSNNALV
Sbjct: 238 GHRNAVYCAIFDRAGRYVITGSDDRLVKIWSMETAYCLASCRGHDGDITDLAVSSNNALV 297
Query: 301 ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
AS+SNDC+IRVWRLPDGLPISVLRGHT AVTAIAFSPRP +VYQLLSSSDDGTCRIWDAR
Sbjct: 298 ASSSNDCVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPNAVYQLLSSSDDGTCRIWDAR 357
Query: 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV-- 418
Y+Q SPR+Y+PRPSD+V G++ PSSS PQSHQIFCCAFNANGTVFVTGSSD LARV
Sbjct: 358 YTQSSPRLYVPRPSDSVIGKSNGPSSSTVPQSHQIFCCAFNANGTVFVTGSSDNLARVFL 417
Query: 419 --WNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKN 476
WNACK + DD+ QP HEIDVLSGHENDVNYVQFSGCAVASRFS A++ KE++ PKFKN
Sbjct: 418 QVWNACKLSMDDTGQPVHEIDVLSGHENDVNYVQFSGCAVASRFSTAETWKEENIPKFKN 477
Query: 477 SWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI 536
SW HDNIVTCSRDGSAIIWIP+SRRSH K+ RWT+AYHL+VPPPPMPPQP RGGPRQRI
Sbjct: 478 SWLNHDNIVTCSRDGSAIIWIPKSRRSHGKSGRWTRAYHLRVPPPPMPPQPQRGGPRQRI 537
Query: 537 LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR 596
LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA+DGSLVHSLTGHTESTYVLDVHPFNPR
Sbjct: 538 LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNPR 597
Query: 597 IAMSAGYDGKTIVWDIWEGIPIRIYEISRFR--------DGASIILSDDVGQLYILNTGQ 648
IAMSAGYDG+TIVWDIWEG+PIR YEISRF+ DG SIILSDDVGQLYIL+TGQ
Sbjct: 598 IAMSAGYDGRTIVWDIWEGLPIRTYEISRFKLVDGKFSPDGTSIILSDDVGQLYILSTGQ 657
Query: 649 GESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQT 708
GESQKDAKYDQFFLGDYRPL+QDT+GNVLDQETQ+ P+RR+LQD LCDSAMIPYPEPYQ+
Sbjct: 658 GESQKDAKYDQFFLGDYRPLIQDTHGNVLDQETQIVPYRRSLQDLLCDSAMIPYPEPYQS 717
Query: 709 MYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEPE 768
+QQRRLGALG EWRPSSL+LAVGPDFSLD Y + PLADLD++ +PLPEFID M+WEPE
Sbjct: 718 EFQQRRLGALGFEWRPSSLRLAVGPDFSLDPDYHMLPLADLDLLTEPLPEFIDAMEWEPE 777
Query: 769 NEVQSDDNDSEYNVAEEYSTE-EKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKKQ 827
EV SDD DSEYNV E++S++ EKG SS +SGDS CS ++SE + MD +RRSKRKKQ
Sbjct: 778 VEVFSDDTDSEYNVTEDFSSKGEKGCSSSNASGDSGCSTDNSEGEDTCMDNIRRSKRKKQ 837
Query: 828 KAEVEIMTSSGRRVKRRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRAAA 887
K E E+MTSSGRRVKRR LDE +GN FG+ R+RK + QK+ RRKSS SKS RPQRAAA
Sbjct: 838 KTETEVMTSSGRRVKRRNLDERDGNT-FGSSRSRKGKSVQKTLRRKSSKSKSSRPQRAAA 896
Query: 888 RNARSFFSKITGASTDGEDVDGSEGELSESESDLQDSYIESEESGRSLLNEQRKHSKGKG 947
RNA FSKITG TDGE+ D G+ S SES LQ+S I+S+ES +L NEQ +SKGK
Sbjct: 897 RNALHLFSKITGTPTDGEE-DSLVGDFSGSESTLQESNIDSDESDGTLQNEQLNYSKGKE 955
Query: 948 ISLDDSEDVTKLDTPESHVN-AGIRRLVLKLPVRDSNKHELQERTSDKCNQLVSVIGTSS 1006
+S +SE+ + E+HVN RRLVLKLP RD +K ++++ + ++G+SS
Sbjct: 956 VSYYESENTKSHELTETHVNLMNKRRLVLKLPNRDISK------STNEFDYQTELVGSSS 1009
Query: 1007 EAHQEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKIRWG 1066
++ QEAT+ NGN S + S + +E + + D++ D+++L GKIRWG
Sbjct: 1010 KSSQEATDFNGNGPSSKDSGYYSGSTSYPTVETTDQAKLDQVTDHVDLL-----GKIRWG 1064
Query: 1067 GVRARSSKRLKIGEMMPLDANNGSGI---HLDDDKEKESEVNGHVKPEKDGIDISCGEEI 1123
VRARSSK L++GE MP D N SG HLD EKE+ +GH K +K+ ++ EI
Sbjct: 1065 MVRARSSKPLRVGEAMPSDTNPYSGKCPNHLD---EKENVGSGHEKEDKNFSALTPELEI 1121
Query: 1124 TNCGDNTDEVPLKNVKNLSGENNDVYSG------DASCKEQQSGFSELNYYDES------ 1171
D+ L ++ ++ E +V SG +AS + + +Y +S
Sbjct: 1122 -----QKDDHKLDSLTEINYEKENVSSGHEKEDKNASALTPELEIQKDDYKVDSLTEINE 1176
Query: 1172 KCVNTTDEDTTP-------------------------YPNHLQNGTIQPSELKEI----L 1202
C TT + P P + +I SE+ ++ +
Sbjct: 1177 NCAGTTSQPFNPTEDGREITASSNCRDKDESLISAYVIPQDIVPASISYSEVDQLPELNI 1236
Query: 1203 TPVSTKLRIRSKRILRDADVENQ---------NNGCDALHGSSLDIKPNSLPEVLESDGT 1253
S ++RSKR RD + ++ N+ C ++ + N V++
Sbjct: 1237 GFPSVLTKLRSKRGSRDPESPSKHETKSSVLKNSACSTNDKNNFN---NEQHVVVDDHNN 1293
Query: 1254 NRTSSDRGADGSQRLNAQI--DSTSEHDPLGSHSHSHDPLGSHSHSHSRKMFNVVYRRSK 1311
R +S++G +GSQ ++ QI +STS+ P HS KM+ VYRRS+
Sbjct: 1294 TRVASNQGENGSQEVDPQIRQNSTSQDLP-------------EPHSQRDKMYKAVYRRSR 1340
Query: 1312 TNRDRTNSEGDGGGVGESTLNANNNNFHESAT------DGSRRTRSMGLKTTTCDPDNVS 1365
++R TN D G GE N N+NF+ +A + S+ L+ TTCDP+
Sbjct: 1341 SHRAVTNL-ADSSGQGEFNSNGRNSNFNATANFSNGTNEAIHTNGSLELEPTTCDPNYER 1399
Query: 1366 SNLRLEQHNQPEDMYSGHNRSTSRCQLPHEEWGSSSKMTVGLRSTRNRRTSYLFCDSSPI 1425
+NL++ Q + S N STS QL EE GS+SK+TVGLRS RNRR+SY C++SP+
Sbjct: 1400 NNLKVLQGPGNCMVKSPQNVSTSGGQLTEEERGSNSKLTVGLRSNRNRRSSYNICETSPV 1459
Query: 1426 DRRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEVVYLRQGHQEYINYSGSREVGPWITVK 1485
++RK+ QS +GSWL+LSTHEEG RYIPQ GDEV YLRQGHQEYI+Y RE GPW+++K
Sbjct: 1460 NKRKSLQSATRGSWLLLSTHEEGCRYIPQQGDEVAYLRQGHQEYIDYCRKRESGPWVSLK 1519
Query: 1486 GNIRAVEFCKVESLEYATASGSGDSCCKMTLKFIDPTSSVSNMTFRLTLPEVTGFPDFLV 1545
G+IRAVE+C+V+SLEY+ GSGDSCCKM L+F+DP SSV +F+LTLPEVT FPDFLV
Sbjct: 1520 GHIRAVEYCRVQSLEYSHLPGSGDSCCKMNLQFVDPNSSVVGKSFKLTLPEVTSFPDFLV 1579
Query: 1546 ERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQY 1605
ERTRFDAA+QRNWT RDKC+VWWKNE G+WWDGR+L +K KSSEFPDSPWE YTV+Y
Sbjct: 1580 ERTRFDAAMQRNWTRRDKCRVWWKNEDSSSGNWWDGRILCMKAKSSEFPDSPWESYTVRY 1639
Query: 1606 KTEPTETHLHSPWELFDSDTQWEQPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQ 1665
K++ TETHLHSPWELFD+DT+WEQP IDDD RNKL S KL+QS N VQD+YGV +LK+
Sbjct: 1640 KSDLTETHLHSPWELFDADTEWEQPHIDDDMRNKLQSTLTKLQQSGNPVQDRYGVHELKK 1699
Query: 1666 VSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKI 1725
+S K+ F NRFPVP+S+++IQSRLENNYYR LEA+KHD++++LSNA ++ ++ LS KI
Sbjct: 1700 ISNKSKFINRFPVPISIELIQSRLENNYYRSLEALKHDVSILLSNATTFLEKDAALSAKI 1759
Query: 1726 KRLSDLVTRTLSSL 1739
KRLS+ TR LSSL
Sbjct: 1760 KRLSEWFTRALSSL 1773
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356532519|ref|XP_003534819.1| PREDICTED: uncharacterized protein LOC100819598 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2137 bits (5536), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1146/1813 (63%), Positives = 1355/1813 (74%), Gaps = 110/1813 (6%)
Query: 1 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAE-LDVDVDLREVYFLIMHF 59
MAL+KY PS +APS +K LSFSSKV + A+L D + P +DVD+DLRE+YFLIMHF
Sbjct: 1 MALQKYAPSGNAPSVNIKHLSFSSKVPKKAEL---DEANPNHNMDVDIDLREIYFLIMHF 57
Query: 60 LSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYP 119
LS GPCH+TY QFWNELLEHQLLPRRYHAWYSR+G SGD++DDG+SFPL+YN LVERY
Sbjct: 58 LSAGPCHKTYIQFWNELLEHQLLPRRYHAWYSRTGACSGDKDDDGLSFPLNYNMLVERYS 117
Query: 120 HIEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEID 179
HIEKDHLVKLLKQL++NT+SPS M G+APNAADVPTLLG GSFSLLSYDRDK E+
Sbjct: 118 HIEKDHLVKLLKQLLLNTASPSLGMNLGNAPNAADVPTLLGSGSFSLLSYDRDK-MKEVK 176
Query: 180 HPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRV 239
PP HMRWPHM A+QV GL LREIGGGF RHHRAPSIRAACYA+AKPSTMVQKMQNIKR+
Sbjct: 177 RPPPHMRWPHMKANQVHGLSLREIGGGFPRHHRAPSIRAACYALAKPSTMVQKMQNIKRL 236
Query: 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL 299
RGHRNAVYCAIFDRSGRYV+TGSDDRLVKIWSMETAYCLASCRGH+GDITDLAVSSNNAL
Sbjct: 237 RGHRNAVYCAIFDRSGRYVVTGSDDRLVKIWSMETAYCLASCRGHDGDITDLAVSSNNAL 296
Query: 300 VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
VAS+SNDC+IRVWRLPDGLPISVLRGHT AVTAIAFSPR ++YQLLSSSDDGTCRIWDA
Sbjct: 297 VASSSNDCVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRLNALYQLLSSSDDGTCRIWDA 356
Query: 360 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV- 418
RY+Q SPR+Y+PRPSD+V G++ PSSS PQS QIFCCAFNANGTVFVTGSSD LARV
Sbjct: 357 RYTQSSPRLYVPRPSDSVIGKSSGPSSSTVPQSRQIFCCAFNANGTVFVTGSSDNLARVF 416
Query: 419 ---WNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475
WNACK + DD+DQP HEIDVLSGHENDVNYVQFSGCAVASRFS A++ KE++ PKFK
Sbjct: 417 LQVWNACKLSMDDTDQPIHEIDVLSGHENDVNYVQFSGCAVASRFSTAETLKEENIPKFK 476
Query: 476 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR 535
NSW HDNIVTCSRDGSAIIWIP+SRRSH K+ RWT+AYHL+VPPPPMPPQP RGGPRQR
Sbjct: 477 NSWLNHDNIVTCSRDGSAIIWIPKSRRSHGKSGRWTRAYHLRVPPPPMPPQPQRGGPRQR 536
Query: 536 ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP 595
ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA+DGSLVHSLTGHTESTYVLDVHPFNP
Sbjct: 537 ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNP 596
Query: 596 RIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR--------DGASIILSDDVGQLYILNTG 647
RIAMSAGYDG+TIVWDIWEG+PIR YEISRF+ DG SIILSDDVGQLYIL+TG
Sbjct: 597 RIAMSAGYDGRTIVWDIWEGMPIRTYEISRFKLVDGKFSSDGTSIILSDDVGQLYILSTG 656
Query: 648 QGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQ 707
QGESQKDAKYDQFFLGDYRPL+QDT+GNVLDQETQ+ P+RRNLQD LCDSAMIPYPEPYQ
Sbjct: 657 QGESQKDAKYDQFFLGDYRPLIQDTHGNVLDQETQIVPYRRNLQDLLCDSAMIPYPEPYQ 716
Query: 708 TMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEP 767
+ +QQRRLGALG+EWRPSSL+LAVGPDFSLD Y + PLADLD++ +PLPEFID M+WEP
Sbjct: 717 SEFQQRRLGALGLEWRPSSLRLAVGPDFSLDPDYHMLPLADLDLLTEPLPEFIDAMEWEP 776
Query: 768 ENEVQSDDNDSEYNVAEEY-STEEKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKK 826
E EV SDD DSEYNV E + S EKG SS +SGDS CS ++SE + MD +RRSKRKK
Sbjct: 777 EVEVFSDDTDSEYNVTEGFFSKGEKGGSSSNASGDSGCSTDNSEGEDTCMDSIRRSKRKK 836
Query: 827 QKAEVEIMTSSGRRVKRRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRAA 886
QKAE E+MTSSGRRVKRR LDE +GN FG+ R+RK + QK+SRRKSS SKS RPQRAA
Sbjct: 837 QKAETEVMTSSGRRVKRRNLDERDGNT-FGSSRSRKGKSVQKTSRRKSSKSKSSRPQRAA 895
Query: 887 ARNARSFFSKITGASTDGEDVDGSEGELSESESDLQDSYIESEESGRSLLNEQRKHSKGK 946
ARNA FSKITG TDGE+ D G+ S SES LQ+S I+S+ESG +L NEQ +SKGK
Sbjct: 896 ARNALHLFSKITGTPTDGEE-DSLVGDFSGSESTLQESNIDSDESGGTLQNEQLNYSKGK 954
Query: 947 GISLDDSEDVTKLDTPESHVNAGIRRLVLKLPVRDSNKHELQERTSDKCNQLVSVIGTSS 1006
+S +SED + E+HVN+ +RLVLKLP RD +K ++++ ++G+SS
Sbjct: 955 EVSYYESEDTKSHELTETHVNSMNKRLVLKLPNRDISK------STNEFGYQAELVGSSS 1008
Query: 1007 EAHQEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKIRWG 1066
+ QEAT+ NGNR S + S + +E+ + + ++ D+++L GKIRWG
Sbjct: 1009 KTAQEATDFNGNRPSSKDSGYCSGSTSYPAVEKTDQAKLGQVTDHVDLL-----GKIRWG 1063
Query: 1067 GVRARSSKRLKIGEMMPLDANNGSGI---HLDDDKEKESEVNGH-------------VKP 1110
VRARSSK L++GE MP D + SG HLD EKE+ +GH V P
Sbjct: 1064 MVRARSSKPLRVGEAMPSDTDPYSGKCPNHLD---EKENVSSGHEKEDKNFSALTPEVTP 1120
Query: 1111 E----KDGIDISCGEEITNCGDNTDEVPLKNVKNLSGEN----------NDVYSGDA--S 1154
E KD + EI +N K KN S D Y D+
Sbjct: 1121 ELEIHKDDYRVDSLTEINGKKENAISGHEKEDKNFSALTPELTPELEIQKDDYKVDSLTE 1180
Query: 1155 CKEQQSGFSE--LNYYDE-------SKCVNTTDEDTTPY--PNHLQNGTIQPSELKEILT 1203
E +G + N ++ S C + + + Y P + +I SE+ ++
Sbjct: 1181 INENCAGTTSQPFNLTEDGGEITASSNCRDKNESLISAYVIPQDIVTASIGYSEVDQLPE 1240
Query: 1204 P------VSTKLRIRSKRILRDADVENQ-NNGCDALHGSSLDIKPN-SLPEVLESDGTN- 1254
P VSTKLR SKR RD + ++ L S+ N +L V+ D N
Sbjct: 1241 PNIGFACVSTKLR--SKRGSRDPESPSKLETKSSVLKNSACSTNDNKNLNNVVVDDSNNT 1298
Query: 1255 RTSSDRGADGSQRLNAQI--DSTSEHDPLGSHSHSHDPLGSHSHSHSRKMFNVVYRRSKT 1312
R +S+ G +GSQ ++ QI +STS+ P HSH KM+ VYRRS++
Sbjct: 1299 RVASNHGENGSQEVDPQIRQNSTSQDLP-------------EPHSHRDKMYKAVYRRSRS 1345
Query: 1313 NRDRTNSEGDGGGVGESTLNANNNNFHESAT------DGSRRTRSMGLKTTTCDPDNVSS 1366
+R TN D G GES N N+NF+ +A + S+ L+ T+ DP+ +
Sbjct: 1346 HRAVTNL-ADSSGQGESNSNGRNSNFNAAANFSNGTYEAIHTNGSLELEPTSSDPNYERN 1404
Query: 1367 NLRLEQHNQPEDMYSGHNRSTSRCQLPHEEWGSSSKMTVGLRSTRNRRTSYLFCDSSPID 1426
NL++ Q + S N STS QL EE S+SK+TVGLRSTRNRR+SY ++SP++
Sbjct: 1405 NLKVLQGPGNCIVKSPQNVSTSGGQLTEEERCSNSKLTVGLRSTRNRRSSYNIRETSPVN 1464
Query: 1427 RRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEVVYLRQGHQEYINYSGSREVGPWITVKG 1486
+RK+ QS +GSWL+LSTHEEG RYIPQ GDEVVYLRQGHQEYINY RE GPW+++KG
Sbjct: 1465 KRKSLQSATRGSWLLLSTHEEGCRYIPQQGDEVVYLRQGHQEYINYCRKRESGPWVSLKG 1524
Query: 1487 NIRAVEFCKVESLEYATASGSGDSCCKMTLKFIDPTSSVSNMTFRLTLPEVTGFPDFLVE 1546
+IRAVE+C+V+SLEY+ GSGDSCCKM L F+DP SSV +F+LTLPEVT FPDFLVE
Sbjct: 1525 HIRAVEYCRVQSLEYSHLPGSGDSCCKMNLLFVDPNSSVVGKSFKLTLPEVTSFPDFLVE 1584
Query: 1547 RTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYK 1606
R RFD A+QRNWT RDKC+VWWKNE + G+WWDGR+L VK KSSEFPDSPWE TV+YK
Sbjct: 1585 RIRFDTAMQRNWTRRDKCRVWWKNEDNSSGNWWDGRILCVKAKSSEFPDSPWESCTVRYK 1644
Query: 1607 TEPTETHLHSPWELFDSDTQWEQPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQV 1666
++ TETHLHSPWELFD+DT+WEQP IDDD RNKL SA KL+QS N VQD+YGV +LK++
Sbjct: 1645 SDLTETHLHSPWELFDADTEWEQPHIDDDMRNKLQSALTKLQQSGNTVQDRYGVHELKKI 1704
Query: 1667 SQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIK 1726
S K+ F NRFPVP+S+++IQSRLENNYYR LEA+KHD+ ++LSNA ++ ++ LS KIK
Sbjct: 1705 SNKSKFINRFPVPISIELIQSRLENNYYRSLEALKHDVTILLSNATTFLEKDAVLSAKIK 1764
Query: 1727 RLSDLVTRTLSSL 1739
RLS+ TRTLSSL
Sbjct: 1765 RLSEWFTRTLSSL 1777
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225437555|ref|XP_002270469.1| PREDICTED: uncharacterized protein LOC100248563 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2014 bits (5217), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1108/1809 (61%), Positives = 1312/1809 (72%), Gaps = 113/1809 (6%)
Query: 1 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFL 60
M +K S++APS +M PLSFS+K+HE Q +T DVD+DLREVYFLIMHFL
Sbjct: 1 MDFQKCKSSSEAPSLSMVPLSFSNKLHERPQCQERNTDHVVA-DVDIDLREVYFLIMHFL 59
Query: 61 STGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPH 120
S GPC +T+GQFWNELLEH+LLPRRYHAWYSRSG SGDEND+G SFPL YN LVERYPH
Sbjct: 60 SAGPCQKTFGQFWNELLEHELLPRRYHAWYSRSGACSGDENDNGFSFPLGYNNLVERYPH 119
Query: 121 IEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEIDH 180
I KDHLVKLLKQL++NT+ P +GG+AP+A DVPTLLG GSFSLL + K ++
Sbjct: 120 IGKDHLVKLLKQLMLNTAPPLHGEVGGNAPSAVDVPTLLGTGSFSLLDCHKKKENKQVKP 179
Query: 181 PPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVR 240
PP ++RWPHM ADQVRGL LREIGGGFT+HHRAPSIR+ACYAIAKPSTMVQ+MQN+K++R
Sbjct: 180 PPDYLRWPHMQADQVRGLSLREIGGGFTKHHRAPSIRSACYAIAKPSTMVQRMQNMKKLR 239
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV 300
GHR+AVYCAIFDRSGRYVITGSDDRLVKIWSMETA+CLASCRGHEGDITDLAVSSNN LV
Sbjct: 240 GHRDAVYCAIFDRSGRYVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNVLV 299
Query: 301 ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
ASASND IIRVWRLPDGLPISVLRGHT AVTAIAFSPRP SVYQLLSSSDDG+CRIWDAR
Sbjct: 300 ASASNDFIIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSSVYQLLSSSDDGSCRIWDAR 359
Query: 361 YSQFSPRIYIPRPSDAVAGRNMAP-----SSSAGPQSHQIFCCAFNANGTVFVTGSSDTL 415
+SQ SPRIY+P+P DAVAG+N P SSS GPQSHQI CCAFNA+GTVFVTGSSDT
Sbjct: 360 FSQCSPRIYLPKPPDAVAGKNSVPSMNGTSSSNGPQSHQILCCAFNASGTVFVTGSSDTF 419
Query: 416 AR---VWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472
AR VW+ACK +TDDS+QPNHEIDVLSGHENDVNYVQFS CA ASR S++D+ KE+S P
Sbjct: 420 ARVHQVWSACKSSTDDSEQPNHEIDVLSGHENDVNYVQFSACAGASRSSVSDTFKEESLP 479
Query: 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGP 532
KFKNSWFCHDNIVTCSRDGSAIIWIPRSRR H K RWT+AYHLKVPPPPMPPQPPRGGP
Sbjct: 480 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRYHGKVGRWTRAYHLKVPPPPMPPQPPRGGP 539
Query: 533 RQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHP 592
RQR+LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH+ STYVLDVHP
Sbjct: 540 RQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHSASTYVLDVHP 599
Query: 593 FNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR--------DGASIILSDDVGQLYIL 644
FNPRIAMSAGYDGKTIVWDIWEGIPIR YEI RF+ DG SI+LSDDVGQ+Y+L
Sbjct: 600 FNPRIAMSAGYDGKTIVWDIWEGIPIRTYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLL 659
Query: 645 NTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPE 704
NTGQGESQKDAKYDQFFLGDYRPL++DT GNVLDQETQLAPHRRN+QDPLCDS+MIPY E
Sbjct: 660 NTGQGESQKDAKYDQFFLGDYRPLIRDTIGNVLDQETQLAPHRRNIQDPLCDSSMIPYSE 719
Query: 705 PYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMD 764
PYQTMYQQRRLGALGIEW PSS+ LAVGPDFSL Q YQ+ PLADLD +++PLPE +D +
Sbjct: 720 PYQTMYQQRRLGALGIEWHPSSINLAVGPDFSLGQEYQMPPLADLDRVMEPLPELVDAVY 779
Query: 765 WEPENEVQSDDNDSEYNVAEEYSTE-EKGSLSSTSS-GDSECSAEDSEDGENPMDGLRRS 822
WEPENEV SDD DSEYN+AEEYS+E E GSLS+ SS D ECSAED++ + DGLRRS
Sbjct: 780 WEPENEVISDDTDSEYNIAEEYSSEGEHGSLSAASSFSDPECSAEDTDVEHSHKDGLRRS 839
Query: 823 KRKKQKAEVEIMTSSGRRVKRRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRP 882
+RKK ++EVEIMTSSGRRVKRR L+E +G ++ RT+KS N +K S+R SS +SLRP
Sbjct: 840 RRKKYRSEVEIMTSSGRRVKRRNLNECDGTSS--RSRTKKSKNGRKVSKRNSSKIQSLRP 897
Query: 883 QRAAARNARSFFSKITGASTDGEDVDGSEGELSESESDLQDSYIESEESGRSLLNEQRKH 942
QRAA RNA + FS+IT ST+G+D +G E + S S+ +QDS +++ +S R+L N Q+K+
Sbjct: 898 QRAAKRNALNMFSQITETSTEGDDEEGLEDDSSGSDPMIQDSNMQNTKSDRNLQNVQQKY 957
Query: 943 SKGKGISLDDSEDVTKLDTPESHVNAG-IRRLVLKLPVRDSNKHELQERTSDKCNQLVSV 1001
+G+ SL++ E+ K PES NAG RRLVLK +RDS K E T KCN +
Sbjct: 958 QRGEQSSLNEFENAIKF--PESQSNAGNRRRLVLKFSLRDSKKSIPSEDTRPKCNTQADI 1015
Query: 1002 IGTSSE-AHQEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQF------DKLEDYLNL 1054
+ + S + E N +S + S A+ + R F ++ ED+L+
Sbjct: 1016 VHSPSRPPPKTVEEKETNLISEDPESSSMHAADLEQSQNHNRDDFIHKPRSEETEDHLDT 1075
Query: 1055 SNGYKDGKIRWGGVRARSSKRLKIGEMMPLDANNGSGIHLDDDKEKESEVNGHVKPEKDG 1114
S GYKD KIRWG V+ARSSKR + G+ + DA G + D ++NG KPE +G
Sbjct: 1076 SAGYKDNKIRWGEVKARSSKRFRSGDFVASDACTGFDVSFDVHNGNGKDINGQTKPE-NG 1134
Query: 1115 IDISCGEEITNCGDNTDEVPLKNVKNLSG--------ENNDVY-SGDASCKEQQSGFSEL 1165
S EI N E ++V+ +NN++ G+A+ G S L
Sbjct: 1135 CGNSSPSEIQNHAGELLEKLGRDVEPFGTGLENKDDVKNNELAPPGEANKSSSFQGLSLL 1194
Query: 1166 NYY------------------------DESKCVNTTDEDTTPYPNHLQNGTIQPSELKEI 1201
+ + DE + ++ + D T NH +LK
Sbjct: 1195 DDHQKIDASAISSNGNLNKQHKGWSGSDEFRDCDSLEMDETVGINHSH-------DLKGN 1247
Query: 1202 LTPVSTKLRIRSKRILRDADVENQNNGCDALHGSSLDIKPNSLPEVLESDGTNRTSSDRG 1261
S KLRIRSKRI+RD + P+ L V ++ + D
Sbjct: 1248 PPANSLKLRIRSKRIVRDPNF------------------PSKLKFVTGTEEPSNIGGDLM 1289
Query: 1262 ADGSQRL-NAQIDSTSEHDPLGSHSHSHDPLGSHSHSHSRKMFNVVYRRSKTNRDRTNSE 1320
+ R+ + QI E D + S P SHS S ++ ++ V++R+K+ RTN+E
Sbjct: 1290 SRSHSRMEHNQISEVPEEDKVIEMPSS--PHRSHSDS-DKQNYDAVHKRAKSYMARTNAE 1346
Query: 1321 GDGGGVGESTLNANNNN------FHESATDGSRRTRSMGLKTTTCDPDNVSSNLRL-EQH 1373
G GG + ES NA N N FHE+ TD RTRSM TT+ +P+NV S ++ E+
Sbjct: 1347 GYGGSMEESASNAGNYNYDSGIDFHEATTDAVHRTRSMVRDTTSQEPNNVMSRFKVREET 1406
Query: 1374 NQPEDMYSGHNRSTSRCQLPHEEWGSSSKMTVGLRSTRNRRTSYLFCDS--SPIDRRKTH 1431
++ + YS +R QL EEW SSS+M V RSTR RR Y D+ SP R ++
Sbjct: 1407 SKNAENYS----KKTRDQLQSEEWMSSSRMRVRSRSTRYRRGDY---DNYLSPSAGRISN 1459
Query: 1432 QSLRKGSWLMLSTHEEGSRYIPQLGDEVVYLRQGHQEYINYSGSR-EVGPWITVKGNIRA 1490
S RK SWLMLS HEEG RYIPQ GDEVVYLRQGHQEYI R EVGPW + K NIRA
Sbjct: 1460 FSGRKVSWLMLSEHEEGYRYIPQQGDEVVYLRQGHQEYIEKLNLRSEVGPWRSPKTNIRA 1519
Query: 1491 VEFCKVESLEYATASGSGDSCCKMTLKFIDPTSSVSNMTFRLTLPEVTGFPDFLVERTRF 1550
VE C VE L YA+ +GSGDSCCK+TLKF DP SSV TF+LTLPE+ F DF+VE+TR+
Sbjct: 1520 VEICSVEDLVYASLAGSGDSCCKITLKFTDPLSSVFGRTFKLTLPELINFSDFVVEKTRY 1579
Query: 1551 DAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPT 1610
DAAI RNWT RDKC VWW+N D GSWW+GR+L+V+ KS EFPDSPWERY V+YK +
Sbjct: 1580 DAAIGRNWTHRDKCLVWWRNGEDGGGSWWEGRILAVEAKSREFPDSPWERYVVKYKGD-A 1638
Query: 1611 ETHLHSPWELFDSDTQWEQPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKT 1670
E +LHSPWEL D D QWEQP+ID + R+KLLS+FAKLE SA+++QD YG+QK QV+QK
Sbjct: 1639 ENNLHSPWELHDPDIQWEQPQIDFEIRDKLLSSFAKLE-SAHKIQDYYGIQKFNQVAQKL 1697
Query: 1671 NFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSD 1730
+F NRFPVPL ++IQ+RLENNYYR LEAVKHDI VMLSNA+SYFGRN +LS+K+KRLSD
Sbjct: 1698 DFLNRFPVPLYPELIQARLENNYYRTLEAVKHDIMVMLSNAQSYFGRNAELSSKMKRLSD 1757
Query: 1731 LVTRTLSSL 1739
TRTLS L
Sbjct: 1758 WFTRTLSKL 1766
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449433431|ref|XP_004134501.1| PREDICTED: uncharacterized protein LOC101214610 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2007 bits (5200), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1074/1780 (60%), Positives = 1303/1780 (73%), Gaps = 92/1780 (5%)
Query: 1 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFL 60
MALRK++ PS +K SF K+HE Q +T++ E DV++D REVYFLIMHFL
Sbjct: 1 MALRKFV-CGSTPSINLKHSSFPIKLHEQTQFEEPETNRTLEPDVEIDPREVYFLIMHFL 59
Query: 61 STGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPH 120
S+GPC RT G W+EL EHQLLPRRYHAWYSR+G+ SG ENDDG+SFPLSY LVERYPH
Sbjct: 60 SSGPCLRTCGLLWDELFEHQLLPRRYHAWYSRNGVHSGHENDDGLSFPLSYQHLVERYPH 119
Query: 121 IEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEIDH 180
++K+HL+KLLKQLI+N + PSR M GG APNAADVPTLLG G+FSLLSYD+ +G ++
Sbjct: 120 VDKNHLIKLLKQLILNKAPPSRGMSGGIAPNAADVPTLLGTGTFSLLSYDKHEGVSKPSG 179
Query: 181 PPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVR 240
PPAHMRWPHM AD VRGL LREIGGGF+RH RAPS+RAACYAIAKPSTMVQKMQNIKR+R
Sbjct: 180 PPAHMRWPHMKADSVRGLSLREIGGGFSRHQRAPSVRAACYAIAKPSTMVQKMQNIKRLR 239
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV 300
GHRNAVYCAIFDR+GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA+V
Sbjct: 240 GHRNAVYCAIFDRAGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAVV 299
Query: 301 ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
AS+SND +IRVWRLPDGLPISVLRGHT AVTAIAFSPR + YQLLSSSDDGTCRIWDAR
Sbjct: 300 ASSSNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPR--AAYQLLSSSDDGTCRIWDAR 357
Query: 361 -YSQFSPRIYIPRPSDAVAG----RNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTL 415
SQ +PRIY+P+P D+V G RN S S PQSHQIFCCAFNA GT+FVTGSSDTL
Sbjct: 358 SSSQSAPRIYVPKPLDSVTGWLISRNGGSSVSTLPQSHQIFCCAFNACGTIFVTGSSDTL 417
Query: 416 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475
ARVW+ACK N D+ DQPNHEIDVL+GHENDVNYVQFSGCAVASRF+ D +KED+ KFK
Sbjct: 418 ARVWSACKGNNDNPDQPNHEIDVLAGHENDVNYVQFSGCAVASRFTTTDVAKEDNVHKFK 477
Query: 476 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR 535
NSWF +DNIVTCSRDGSAIIW+PRSRRSH K RWT+AYHLKVPPPPMPPQP RGGPRQR
Sbjct: 478 NSWFTYDNIVTCSRDGSAIIWVPRSRRSHGKVGRWTRAYHLKVPPPPMPPQPARGGPRQR 537
Query: 536 ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP 595
ILPTPRGVNMI+WSLDNRFVLAAIMDCRICVWNA+DGSLVHSLTGHTESTYVLDVHPFNP
Sbjct: 538 ILPTPRGVNMIIWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNP 597
Query: 596 RIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR--------DGASIILSDDVGQLYILNTG 647
RIAMSAGYDGKTIVWDIWEG PIRIYEIS F+ DG SIILSDDVGQLYIL+TG
Sbjct: 598 RIAMSAGYDGKTIVWDIWEGTPIRIYEISHFKLVDGKFSSDGTSIILSDDVGQLYILSTG 657
Query: 648 QGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQ 707
QGESQ+DAKYDQFFLGDYRPL+QD GNV+DQETQL+ +RRNLQD L DS MIPYPEPYQ
Sbjct: 658 QGESQQDAKYDQFFLGDYRPLIQDPSGNVIDQETQLSTYRRNLQDLLSDSGMIPYPEPYQ 717
Query: 708 TMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEP 767
T YQQRRLGA+ +EWRPSSLKL+VGPDF+LD YQL PLADLD++++PLP+ +D MDW P
Sbjct: 718 TAYQQRRLGAMSVEWRPSSLKLSVGPDFNLDPDYQLLPLADLDMLVEPLPDIVDAMDWGP 777
Query: 768 ENEVQSDDNDSEYNVAEEYST-EEKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKK 826
ENEVQS+D DSEYNV E+YST E+ SL+S S D ECS+ED+ + P DGLRRSKRKK
Sbjct: 778 ENEVQSEDTDSEYNVTEDYSTGGEQRSLNSNCSTDPECSSEDTGIDDAPADGLRRSKRKK 837
Query: 827 QKAEVEIMTSSGRRVKRRILDESEGNAAFGNK-RTRKSGNRQKSSRRKSSTSKSLRPQRA 885
QKA++E+MTSSGRRVKRR +DE EG+A ++ R KSG++ S SKSLRPQRA
Sbjct: 838 QKADMEVMTSSGRRVKRRNMDEYEGDAIRSSRNRKSKSGHKPSKK---KSASKSLRPQRA 894
Query: 886 AARNARSFFSKITGASTDGEDVDGSEGELSESESDLQDSYIESEESGRSLLNEQRKHSKG 945
AARNAR++ S G STDGE+ S G+ SESES L+DS IES+E RSL N + KHSKG
Sbjct: 895 AARNARNWISSFKGKSTDGEEEYESGGDCSESESTLEDSDIESDEYERSLQN-RIKHSKG 953
Query: 946 KGISLDDSEDVTK-LDTPESHVNAGIR-RLVLKLPVRDSNKHELQERTSDKCNQLVSVIG 1003
K + L +E++TK LD PES V+AG R +L++K V++ NK + T+ C+ V
Sbjct: 954 KEVFLYGAEEITKSLDVPESRVDAGNRKKLIVKFSVKNLNKGDPPLSTALSCSNTADVAS 1013
Query: 1004 TSSEAHQEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKI 1063
+SS + +E E + N V R QF ++ +L+ Y +G I
Sbjct: 1014 SSSRSPKEVIETSQNLV-------------------RSERQFVNIDGNSDLTEVYTNGNI 1054
Query: 1064 RWGGVRARSSKRLKIGEMMPLDANN-GSGIHLDDDKEKESEVNGHVKPEKDGIDISCGEE 1122
RWGG R RSSKR++ G+ MP DA S + D E E+ V+ +++ E S +
Sbjct: 1055 RWGGSRVRSSKRIRFGDTMPSDAYAVSSSLPNGDHNENENAVHEYLERENHFGAPSPHAK 1114
Query: 1123 ITN-CGDNTDEVPLKNVK----NLSGENND-VYSGDASCKEQQSGFSELNYYDESKCVNT 1176
+ N C D D V +K N SG + + V G+ C G S+ +D+S +
Sbjct: 1115 VVNFCSDEMDTVSPTKLKEEDDNASGHSQEMVNGGELKC----VGNSKSCDHDDSNNLIM 1170
Query: 1177 TDEDTTPYPNHLQNGTIQPSELKEILTPVSTKLRIRS---------KRILRDADVENQNN 1227
D T +QNGT P E E P+ K+R +S K + D ++N+
Sbjct: 1171 FSSDAT--TTSIQNGTHAP-EQTENTAPMRKKIRFKSISLDPEHSLKHKIESLDESSKND 1227
Query: 1228 GCDALHGSSLDIKPNSLPEVLESDGTNRTSSDRGADGSQRLNAQIDSTSEHDPLGSHSHS 1287
+ + GS PN L + + TN T SD + + ++ +D P+ + +S
Sbjct: 1228 EYNTVSGSPQ--HPNGLKDSV----TNETYSDLRNNCPEDMDIAVD----EKPVSTLCNS 1277
Query: 1288 HDPLGSHSHSHSRKMFNVVYRRSKTNRDRTNSEGDGGGVGESTL-NANNNNFHESATDGS 1346
+ ++ KM+ VY RSK+N+ ++N + +G GE L N++ +S
Sbjct: 1278 SELQAVETN----KMYTAVYTRSKSNKGKSNIDSNGCASGEHALGNSSLPADADSHKIML 1333
Query: 1347 RRTRSMGLKTTTCDPDNVSSNLRLEQHNQPEDM--YSGHNRSTSRCQLPHEEWGSSSKMT 1404
R+ RS+ K ++ D +NV +L+ ++ + E SG N S R +P EEWGSSS+MT
Sbjct: 1334 RKARSIRFKESSYDLNNVGDDLKSDEDQELEQKSRRSG-NSSADRSHIPSEEWGSSSRMT 1392
Query: 1405 VGLRSTRNRRTSYLFCDSSPIDRRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEVVYLRQ 1464
VG RSTRNRR + L D +P+DRRK+ Q RKGSWLM+ HE GSRYIPQLGDEV YLRQ
Sbjct: 1393 VGSRSTRNRRGT-LIQDINPVDRRKSVQYARKGSWLMMPAHEGGSRYIPQLGDEVAYLRQ 1451
Query: 1465 GHQEYI-----NYSGSREVGPWITVKGNIRAVEFCKVESLEYATASGSGDSCCKMTLKFI 1519
GHQEYI NY +++GPW + +G IRAVEFCKV L Y+T++GSGDSCCKM LKFI
Sbjct: 1452 GHQEYIQHCCANYCHIKDMGPWTSNRGTIRAVEFCKVVELVYSTSAGSGDSCCKMLLKFI 1511
Query: 1520 DPTSSVSNMTFRLTLPEVTGFPDFLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWW 1579
DP+S V +F+LTLPE+T FPDFLVE++RF+AA+QRNWT RDKCKVWWKN+ DGSWW
Sbjct: 1512 DPSSQVYLQSFKLTLPELTSFPDFLVEKSRFEAAMQRNWTFRDKCKVWWKNDVGVDGSWW 1571
Query: 1580 DGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFDSDTQWEQPRIDDDNRNK 1639
DGR++SV+ KSSEFP+SPWERYT++Y+++P E HLHSPWEL+D+ QWEQPRIDD+ ++K
Sbjct: 1572 DGRIISVQAKSSEFPESPWERYTIRYRSDPAEPHLHSPWELYDTIIQWEQPRIDDETKSK 1631
Query: 1640 LLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEA 1699
LL A KL + +Q ++G+Q L +S+KT + NRFPVPL L++IQ RL+N+YYR LEA
Sbjct: 1632 LLMAIDKLMSPS--MQGRFGIQDLMILSRKTQYKNRFPVPLCLEIIQERLQNDYYRSLEA 1689
Query: 1700 VKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1739
+KHD VMLSN ES+ +N D+S KI+RLSD R +S L
Sbjct: 1690 LKHDFMVMLSNFESFVAKNEDMSKKIRRLSDWFDRNISPL 1729
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42568419|ref|NP_199754.2| WD40/YVTN repeat and Bromo-WDR9-I-like domain-containing protein [Arabidopsis thaliana] gi|332008427|gb|AED95810.1| WD40/YVTN repeat and Bromo-WDR9-I-like domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1849 bits (4790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1045/1777 (58%), Positives = 1263/1777 (71%), Gaps = 140/1777 (7%)
Query: 1 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFL 60
MALRK P D+ S MKPL+FS K+ N Q+ D Q ++D+DLREVYFL++H L
Sbjct: 1 MALRKNTPKGDSVSLPMKPLNFSRKLPGNVQIPDPDIVQSVAPNIDLDLREVYFLMLHLL 60
Query: 61 STGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPH 120
S+GPC +TY +ELLEH+LLPRRYHAWYSRSGLPSGDENDDG SFPL+Y +L +RY H
Sbjct: 61 SSGPCQKTYALLRHELLEHELLPRRYHAWYSRSGLPSGDENDDGNSFPLNYTELAKRYSH 120
Query: 121 IEKDHLVKLLKQLII--NTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEI 178
++KDHLV+LLKQL+ N +PSR + G+ A VPTLLG GSFSLLS D++ +++
Sbjct: 121 VKKDHLVELLKQLVFVSNRPNPSRGIGDGNKMIGAGVPTLLGTGSFSLLSSDKEIVGSDL 180
Query: 179 DHPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKR 238
PP MRWPHM+ADQVRG+ LREIGGGF RHHRAPSIRAACY IAKPS+MVQKMQNIKR
Sbjct: 181 KPPPIGMRWPHMHADQVRGISLREIGGGFARHHRAPSIRAACYVIAKPSSMVQKMQNIKR 240
Query: 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA 298
+RGHRNAVYCAI DRSGRYVITGSDDRLVK+WSM+TAYCLASCRGHEGDITDLAVSSNN
Sbjct: 241 LRGHRNAVYCAILDRSGRYVITGSDDRLVKVWSMDTAYCLASCRGHEGDITDLAVSSNNI 300
Query: 299 LVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358
+ASASNDC+IRVWRLPDGLP+SVLRGHT AVTAIAFSPRPGS YQLLSSSDDGTCRIWD
Sbjct: 301 FIASASNDCVIRVWRLPDGLPVSVLRGHTGAVTAIAFSPRPGSPYQLLSSSDDGTCRIWD 360
Query: 359 ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV 418
AR +QF+PRIY+PRP + G+N PSSS QSHQIFCCAFNA+G+VFVTGSSDTLARV
Sbjct: 361 ARGAQFAPRIYVPRPP-SPDGKNSGPSSSNAQQSHQIFCCAFNASGSVFVTGSSDTLARV 419
Query: 419 ---WNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475
W+A K NTDD +QPNHE+DVL+GHENDVNYVQFSGCA S+FS+ D SK+++ PKFK
Sbjct: 420 YSVWSANKTNTDDPEQPNHEMDVLAGHENDVNYVQFSGCAAGSKFSVTDYSKDENVPKFK 479
Query: 476 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR 535
NSWFCHDNIVTCSRDGSAIIWIPR RRSH K+ RWT+AYHLKVPPPPMPPQPPRGGPRQR
Sbjct: 480 NSWFCHDNIVTCSRDGSAIIWIPRLRRSHGKSCRWTRAYHLKVPPPPMPPQPPRGGPRQR 539
Query: 536 ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP 595
ILPTPRGVNMI WSLDNRFVLAAIMDCRICVWNA+DGSLVHSLTGHT STYV+DVHPFNP
Sbjct: 540 ILPTPRGVNMIAWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTASTYVMDVHPFNP 599
Query: 596 RIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR--------DGASIILSDDVGQLYILNTG 647
RIAMSAGYDGKTIVWDIWEGIPI+IY+IS ++ DG SIILSDDVGQLYIL+TG
Sbjct: 600 RIAMSAGYDGKTIVWDIWEGIPIQIYDISHYKLVDGKFSPDGTSIILSDDVGQLYILSTG 659
Query: 648 QGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQ 707
QG+SQKDAKYDQFFLGDYRPL+QDTYGNVLDQE+QL P+RRN++DPLCDS MIPY EPYQ
Sbjct: 660 QGDSQKDAKYDQFFLGDYRPLIQDTYGNVLDQESQLQPYRRNMEDPLCDSGMIPYEEPYQ 719
Query: 708 TMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEP 767
T +Q+RRLGALG EWRPSSLKLAVGPD +LD+ YQ+ PLADLD + +PLPEFIDVM+WEP
Sbjct: 720 TTFQKRRLGALGKEWRPSSLKLAVGPDITLDRDYQMPPLADLD-LAEPLPEFIDVMEWEP 778
Query: 768 ENEVQSDDNDSEYNVAEEYST-EEKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKK 826
E ++ SD+NDSEYNV EEYS+ +E+ L+S++SG+S S+ +S + ++ + LRRSKRKK
Sbjct: 779 EVDILSDENDSEYNVPEEYSSGKEQECLNSSTSGESGSSSGESYEDDDHQNSLRRSKRKK 838
Query: 827 QKAEVEIMTSSGRRVKRRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRAA 886
K E IMTSSGRRVK+R DE EG A KRTRKS + +K S+RKSS SKS RP+RAA
Sbjct: 839 HKKEAGIMTSSGRRVKKRNFDELEG-APSNKKRTRKSRSGRKESKRKSSKSKSSRPRRAA 897
Query: 887 ARNARSFFSKITGASTDGEDVDGSEGELSESESD-LQDSYIESEESGRSLLNEQRKHSKG 945
ARNA S+FSKITG S D E+ + SE S QDS E +LLN K SKG
Sbjct: 898 ARNALSWFSKITGTSKDAEEEEVSELSDSSESESTTQDSGTGDSELEVALLNGHGKQSKG 957
Query: 946 KGISLDDSED-VTKLDTPESHVNAGIRRLVLKLPVRDSNKHELQERTSDKCNQLVSVIGT 1004
K I + DS+D + D E+H A RRLVL+ PVR+S+K L E ++ G+
Sbjct: 958 KTILVCDSDDGAQQCDIRETHT-AERRRLVLRFPVRNSDKLTLLE----------NLPGS 1006
Query: 1005 SSEAHQEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKIR 1064
S + T GNG C R QF+ G K++
Sbjct: 1007 SCDV-PSPTLGNG----------------CTEDSRIPGNQFE----------GLDVSKVK 1039
Query: 1065 WGGVRARSSKRLKIGEMMPLDANNGSGIHLDDDKEKESEVNGHVKPEKDGIDI-SCGEEI 1123
WG V+AR++KR++ GE + GS D + KE+ V +G+ SC E
Sbjct: 1040 WGMVKARTTKRIR-GEAISSHELMGS-----DPEGKENNVKEDSNHRGNGVTAPSCLELK 1093
Query: 1124 TNCGD---NTDEVPLKNVKNLSGENNDVYSGDASCKEQQSGFSELNYYDESKCVNTTDED 1180
T+ D +TD V + N G+ G S D+
Sbjct: 1094 TDIDDMAVDTDTVISNGLPN-GGKRYPELDGSPS--------------------RVADDK 1132
Query: 1181 TTPYPNHLQNGTIQPSELKEILTPVSTKLRIRSKRILRDAD-----------VENQNNGC 1229
+ N QN T + +L + L P+ST L+IRSKR+ R D ++ + G
Sbjct: 1133 AS---NSSQNVTHR-HDLIDSLPPISTTLKIRSKRVSRAPDTSLRQEGKSLSIDQETGGS 1188
Query: 1230 DALHGSSLDIKPNSLPEVLESDGTNRTSSDRGADGSQRLNAQI-DSTSEHDPLGSHSHSH 1288
DAL+ D K + L + DG T D LN QI D+ S + +
Sbjct: 1189 DALNDGFEDAKCD-LTLDCQKDGVVGTEISLRNDCVLELNPQICDALSIANDV------- 1240
Query: 1289 DPLGSHSHSHSRKMFNVVYRRSKTNRDRTNSEGDGGGVGE------STLNANNNNFHESA 1342
P+ SHSH ++MF+ VYRR K+ + + N + D E S + + + HE A
Sbjct: 1241 -PV---SHSHPKRMFDFVYRR-KSRKHKNNLDRDAALTKEVSPGSCSQDHGSGSKSHEGA 1295
Query: 1343 TDGSRRTRSMGLKTTTCDPDNVSSNLRLEQHNQPEDMYSGHNRSTSRCQLPHEEWGSSSK 1402
++G T GL+ + ++ + + NQ EE S+S
Sbjct: 1296 SNGFHGTELNGLEKSEGSLTHIQDKISDSRGNQNS----------------QEELRSASG 1339
Query: 1403 MTVGLRSTRNRRTSYLFCDSSPIDRRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEVVYL 1462
T+ LRSTRNR+++Y F ++ PI+ +K Q + SWL LS HEEGSRYIPQ+GDEV YL
Sbjct: 1340 ATLRLRSTRNRKSTYPFSETKPIETKKPQQLIENVSWLTLSIHEEGSRYIPQMGDEVAYL 1399
Query: 1463 RQGHQEYINYSGSREVGPWITVK-GNIRAVEFCKVESLEYATASGSGDSCCKMTLKFIDP 1521
RQGHQEY+N+S REV PW ++K GNI+AVE CKVESLEYAT GSGDSCCKM LK IDP
Sbjct: 1400 RQGHQEYLNFSSLREVAPWTSIKGGNIKAVEICKVESLEYATLPGSGDSCCKMILKVIDP 1459
Query: 1522 TSSVSNMTFRLTLPEVTGFPDFLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDG 1581
S V N F+LTLPEV FPDFLVER+R++AAIQRNWTCRDKCKVWW++E +EDGSWW+G
Sbjct: 1460 NSEVFNKAFKLTLPEVVTFPDFLVERSRYEAAIQRNWTCRDKCKVWWRDEGEEDGSWWEG 1519
Query: 1582 RVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFDSDTQWEQPRIDDDNRNKLL 1641
R+L+VKPKS +FPDSPWERYTV+YK++P ETHLHSPWELFD+DT+WEQP IDD+ RN+LL
Sbjct: 1520 RILAVKPKSPDFPDSPWERYTVKYKSDPAETHLHSPWELFDADTKWEQPHIDDEQRNRLL 1579
Query: 1642 SAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVK 1701
SA KLE S R QD +G++KL Q ++++NRFPVPLSL+VI+SRLENNYYR +EA++
Sbjct: 1580 SALTKLETSDKRTQDSFGLRKLNQTVGNSSYSNRFPVPLSLEVIRSRLENNYYRSVEALR 1639
Query: 1702 HDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1738
HD++VMLSNAE++FGRN ++ KI LS+ RTL S
Sbjct: 1640 HDVSVMLSNAETFFGRNKSVAAKISNLSNWFDRTLPS 1676
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297795697|ref|XP_002865733.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297311568|gb|EFH41992.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1837 bits (4758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1039/1763 (58%), Positives = 1246/1763 (70%), Gaps = 143/1763 (8%)
Query: 17 MKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFLSTGPCHRTYGQFWNEL 76
MKPL+FS K+ N Q+ D +Q ++D+DLREVYFLI+H LS+GPC +TY +EL
Sbjct: 1 MKPLNFSRKLPGNVQIPDPDIAQVVAPNIDLDLREVYFLILHLLSSGPCQKTYALLRHEL 60
Query: 77 LEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPHIEKDHLVKLLKQLII- 135
LEH+LLPRRYHAWYSRSGL SGDENDDG SFPL+Y +L +RY H++KDHLV+LLKQL+
Sbjct: 61 LEHELLPRRYHAWYSRSGLSSGDENDDGNSFPLNYTELAKRYSHVKKDHLVELLKQLVFV 120
Query: 136 -NTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEIDHPPAHMRWPHMYADQ 194
N +PSR + G+ A VPTLLG GSFSLLS D++ +++ PP MRWPHM+ADQ
Sbjct: 121 SNRPNPSRGIGDGNKMIGAGVPTLLGTGSFSLLSSDKEIVGSDLKAPPIGMRWPHMHADQ 180
Query: 195 VRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRS 254
VRG+ LREIGGGF RHHRAPSIRAACY IAKPS+MVQKMQNIKR+RGHRNAVYCAI DRS
Sbjct: 181 VRGISLREIGGGFGRHHRAPSIRAACYVIAKPSSMVQKMQNIKRLRGHRNAVYCAILDRS 240
Query: 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314
GRYVITGSDDRLVK+WSM+TAYCLASCRGHEGDITDLAVSSNN +ASASNDC+IRVWRL
Sbjct: 241 GRYVITGSDDRLVKVWSMDTAYCLASCRGHEGDITDLAVSSNNIFIASASNDCVIRVWRL 300
Query: 315 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS 374
PDGLP+SVLRGHT AVTAIAFSPRPGS YQLLSSSDDGTCRIWDAR +QF+PRIY+PRP
Sbjct: 301 PDGLPVSVLRGHTGAVTAIAFSPRPGSPYQLLSSSDDGTCRIWDARGAQFAPRIYVPRPP 360
Query: 375 DAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV---WNACKPNTDDSDQ 431
+ G+N PSSS QSHQIFCCAFNANG+VFVTGSSDTLARV W+A K NTDD +Q
Sbjct: 361 -SPDGKNSGPSSSNAQQSHQIFCCAFNANGSVFVTGSSDTLARVYSVWSANKTNTDDPEQ 419
Query: 432 PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG 491
PNHE+DVL+GHENDVNYVQFSGCA S+FS+ D SK+++ PKFKNSWFCHDNIVTCSRDG
Sbjct: 420 PNHEMDVLAGHENDVNYVQFSGCAAGSKFSVTDYSKDENVPKFKNSWFCHDNIVTCSRDG 479
Query: 492 SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD 551
SAIIWIPRSRRSH K+ RWT+AYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMI WSLD
Sbjct: 480 SAIIWIPRSRRSHGKSCRWTRAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIAWSLD 539
Query: 552 NRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611
NRFVLAAIMDCRICVWNA+DGSLVHSLTGHT STYV+DVHPFNPRIAMSAGYDGKTIVWD
Sbjct: 540 NRFVLAAIMDCRICVWNASDGSLVHSLTGHTASTYVMDVHPFNPRIAMSAGYDGKTIVWD 599
Query: 612 IWEGIPIRIYEISRFR--------DGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLG 663
IWEGIPI+IYEIS ++ DG SIILSDDVGQLYIL+TGQG+SQKDAKYDQFFLG
Sbjct: 600 IWEGIPIQIYEISHYKLVDGKFSPDGTSIILSDDVGQLYILSTGQGDSQKDAKYDQFFLG 659
Query: 664 DYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWR 723
DYRPL+QD YGNVLDQE+QL P+RRN++DPLCDS MIPY EPYQT +Q+RRLGALG EWR
Sbjct: 660 DYRPLIQDIYGNVLDQESQLQPYRRNMEDPLCDSGMIPYEEPYQTTFQKRRLGALGKEWR 719
Query: 724 PSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEPENEVQSDDNDSEYNVA 783
PSSLKLAVGPD +LDQ YQ+ PLADLD + +PLPEFIDVM+WEPE ++ SD+NDSEYNV
Sbjct: 720 PSSLKLAVGPDITLDQDYQMPPLADLD-LAEPLPEFIDVMEWEPEVDILSDENDSEYNVP 778
Query: 784 EEYST-EEKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKKQKAEVEIMTSSGRRVK 842
EEYS+ +E+ L+S++SG+S S+ +S++ ++ + LRRSKRKK K E IMTSSGRRVK
Sbjct: 779 EEYSSGKEQECLNSSTSGESGSSSGESDEDDDHQNSLRRSKRKKDKKEAGIMTSSGRRVK 838
Query: 843 RRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRAAARNARSFFSKITGAST 902
+R DE EG A KRTRKS + +K S+RKSS SKS RP+RAAARNA S+FSKITG S
Sbjct: 839 KRNFDELEG-APSNKKRTRKSRSGRKESKRKSSKSKSSRPRRAAARNALSWFSKITGTSK 897
Query: 903 DGEDVDGSEGELSESESD-LQDSYIESEESGRSLLNEQRKHSKGKGISLDDSED-VTKLD 960
D E+ + SE S QDS E +LLN K SKGK I + DS+D + D
Sbjct: 898 DAEEEEVSELSDSSESESTTQDSGTGDSELEVALLNGHGKQSKGKNILVCDSDDGAQQCD 957
Query: 961 TPESHVNAGIRRLVLKLPVRDSNKHELQERTSDKCNQLVSVIGTSSEAHQEATEGNGNRV 1020
E+H RRLVL+ PVR+S+K L E ++ G+SS+ T GNG
Sbjct: 958 IRETHPTER-RRLVLRFPVRNSDKLTLLE----------NLPGSSSDV-PTPTLGNG--- 1002
Query: 1021 SYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKIRWGGVRARSSKRLKIGE 1080
C R QF+ G K++WG V+AR++KR++ GE
Sbjct: 1003 -------------CAEDSRIPGNQFE----------GLDVSKVKWGMVKARTTKRIR-GE 1038
Query: 1081 MMPLDANNGSGIHLDDDKEKESEVNGHVKPEKDGIDI-SCGE---EITNCGDNTDEVPLK 1136
+ GS D + KE+ + +G+ SC E +I +TD V
Sbjct: 1039 AISSHELMGS-----DPEGKENNLKEDANHHGNGVTAPSCLELKTDIDGMAVDTDTVISS 1093
Query: 1137 NVKNLSGENNDVYSGDASCKEQQSGFSELNYYDESKCVNTTDEDTTPYPNHLQNGTIQPS 1196
+ N G E S L D+ + N Q+ T
Sbjct: 1094 GLPN----------GGKRYPELDGSPSRL-----------ADDRAS---NGSQDVTGHRH 1129
Query: 1197 ELKEILTPVSTKLRIRSKRILRDAD-----------VENQNNGCDALHGSSLDIKPNSLP 1245
L + L P+ST LRIRSKR+ R D ++ + G DAL+ D K + L
Sbjct: 1130 NLIDSLPPISTTLRIRSKRVSRAPDTSLRQEGKPLSIDQETGGSDALNDGFEDAKCD-LA 1188
Query: 1246 EVLESDGTNRTSSDRGADGSQRLNAQID---STSEHDPLGSHSHSHDPLGSHSHSHSRKM 1302
+ DG T D LN QI S + P+ SHSH ++M
Sbjct: 1189 LDCQKDGVVGTEISLRNDCVLELNPQISDALSIANDVPV-------------SHSHPKRM 1235
Query: 1303 FNVVYRRSKTNRDRTNSEGDGGGVGE------STLNANNNNFHESATDGSRRTRSMGLKT 1356
F+ VYRR K+ + N + D E S + + HE A++G T+ GL+
Sbjct: 1236 FDFVYRR-KSRKYNNNLDRDAAITKEISPGSCSQDQGSGSKSHEGASNGFHGTQLNGLEK 1294
Query: 1357 TTCDPDNVSSNLRLEQHNQPEDMYSGHNRSTSRCQLPHEEWGSSSKMTVGLRSTRNRRTS 1416
+ ++ + + NQ EE S+S T+ LRSTRNR+++
Sbjct: 1295 SEGSLTHIQDKISDSRGNQNS----------------QEELRSASGATLRLRSTRNRKST 1338
Query: 1417 YLFCDSSPIDRRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEVVYLRQGHQEYINYSGSR 1476
Y F ++ PI+ +K Q + SWL LS HEEGSRYIPQ+GDEV YLRQGHQEY+N+S R
Sbjct: 1339 YPFSETKPIETKKPQQLIENVSWLTLSIHEEGSRYIPQMGDEVAYLRQGHQEYLNFSSLR 1398
Query: 1477 EVGPWITVK-GNIRAVEFCKVESLEYATASGSGDSCCKMTLKFIDPTSSVSNMTFRLTLP 1535
EV PW ++K GNI+AVE CKVESLEYAT GSGDSCCKM LK IDP S V N F+LTLP
Sbjct: 1399 EVAPWTSIKGGNIKAVEICKVESLEYATLPGSGDSCCKMILKVIDPNSEVFNKAFKLTLP 1458
Query: 1536 EVTGFPDFLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPD 1595
EV FPDFLVER+R++AAIQRNWTCRDKCKVWW++E +EDGSWW+GR+L+VKPKS +FPD
Sbjct: 1459 EVVTFPDFLVERSRYEAAIQRNWTCRDKCKVWWRDEGEEDGSWWEGRILAVKPKSPDFPD 1518
Query: 1596 SPWERYTVQYKTEPTETHLHSPWELFDSDTQWEQPRIDDDNRNKLLSAFAKLEQSANRVQ 1655
SPWERYTV+YK++P ETHLHSPWELFD+DT+WE P IDD+ RN+LLSA KLE S R Q
Sbjct: 1519 SPWERYTVKYKSDPAETHLHSPWELFDADTKWEPPHIDDEQRNRLLSALTKLETSDKRTQ 1578
Query: 1656 DQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYF 1715
D YG++KL Q +++TNRFPVPLSL+VI+SRLENNYYR +EA++HD+AVMLSNAE++F
Sbjct: 1579 DSYGLRKLNQTVGNSSYTNRFPVPLSLEVIRSRLENNYYRSVEALRHDVAVMLSNAETFF 1638
Query: 1716 GRNTDLSTKIKRLSDLVTRTLSS 1738
GRN ++ KI LS+ R L S
Sbjct: 1639 GRNKSVAAKISNLSNWFDRMLPS 1661
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296083262|emb|CBI22898.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1716 bits (4445), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 915/1260 (72%), Positives = 1007/1260 (79%), Gaps = 90/1260 (7%)
Query: 1 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFL 60
MAL+KYIPS DAPS +MKPLSFSSKV E QLA + S + DVD+DLREVYFLIMHFL
Sbjct: 1 MALQKYIPSGDAPSVSMKPLSFSSKVQEKVQLADPEGSPTMDADVDIDLREVYFLIMHFL 60
Query: 61 STGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPH 120
S GPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGL SGDENDDG SFPLSYNKLVERYPH
Sbjct: 61 SAGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLRSGDENDDGSSFPLSYNKLVERYPH 120
Query: 121 IEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEIDH 180
I KDHLVKLLKQLI++T+ PS+ MI G+ PNAADVPTLLG GSFSLL D DKG NE++
Sbjct: 121 IGKDHLVKLLKQLILSTTHPSQGMIRGNVPNAADVPTLLGTGSFSLLGNDMDKGHNEVNP 180
Query: 181 PPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVR 240
PP HMRWPHM ADQVRGL LREIGGGFTRH+RAPSIRAACYA+AKPSTMVQKMQNIK++R
Sbjct: 181 PPIHMRWPHMQADQVRGLSLREIGGGFTRHNRAPSIRAACYAVAKPSTMVQKMQNIKKLR 240
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV 300
GHRNAVYCAIFDR+GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV
Sbjct: 241 GHRNAVYCAIFDRTGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV 300
Query: 301 ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
AS+SNDCIIRVWRLPDGLPISVLRGHT AVTAIAFSPRP SVYQLLSSSDDGTCRIWDAR
Sbjct: 301 ASSSNDCIIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSSVYQLLSSSDDGTCRIWDAR 360
Query: 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
YSQFSPRIY+PRP D++AG+N PSSS GPQSHQIFCCAFNANGTVFVTGSSDTLARVWN
Sbjct: 361 YSQFSPRIYVPRPPDSIAGKNNVPSSSNGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
Query: 421 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFC 480
ACK N D+SDQPNHE+D+LSGHENDVNYVQFSGCAV+SRFS+A+SSKE++ PKFKNSWF
Sbjct: 421 ACKSNPDESDQPNHEMDILSGHENDVNYVQFSGCAVSSRFSVAESSKEENVPKFKNSWFT 480
Query: 481 HDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP 540
HDNIVTCSRDGSAIIWIPRSRRSH K RWT+AYHLKVPPPPMPPQPPRGGPRQRILPTP
Sbjct: 481 HDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPMPPQPPRGGPRQRILPTP 540
Query: 541 RGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMS 600
RGVNMIVWSLDNRFVLAAIMDCRICVWNA DGSLVHSLTGHTESTYVLDVHPFNPRIAMS
Sbjct: 541 RGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHTESTYVLDVHPFNPRIAMS 600
Query: 601 AGYDGKTIVWDIWEGIPIRIYEISRFR--------DGASIILSDDVGQLYILNTGQGESQ 652
AGYDGKTIVWDIWEG PIRIY+ +RF+ DG SIILSDDVGQLYIL+TGQGESQ
Sbjct: 601 AGYDGKTIVWDIWEGTPIRIYDTARFKLVDGKFSPDGTSIILSDDVGQLYILSTGQGESQ 660
Query: 653 KDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQ 712
KDA YDQFFLGDYRPL+QDTYGNVLDQETQLAP+RRN+QD LCD+ MIPYPEPYQ+MYQQ
Sbjct: 661 KDAMYDQFFLGDYRPLIQDTYGNVLDQETQLAPYRRNMQDLLCDATMIPYPEPYQSMYQQ 720
Query: 713 RRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEPENEVQ 772
RRLGALGIEWRPSSL+LAVGPDF+LDQ YQ+ PL DLDV+IDPLPEFIDVMDWEPENEVQ
Sbjct: 721 RRLGALGIEWRPSSLRLAVGPDFNLDQDYQMLPLPDLDVLIDPLPEFIDVMDWEPENEVQ 780
Query: 773 SDDNDSEYNVAEEYST-EEKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKKQKAEV 831
+DD DSEYNV EEYST E+GSLSS SSGD ECSAEDS+ + DGLRRSKRKKQKAE
Sbjct: 781 TDDTDSEYNVTEEYSTGGEQGSLSSNSSGDPECSAEDSDVENSHKDGLRRSKRKKQKAET 840
Query: 832 EIMTSSGRRVKRRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRAAARNAR 891
EIMT SGRRVKRR LDE +GN+ N RTRKS + +K S + SS SKSLRPQRAAARNA
Sbjct: 841 EIMTFSGRRVKRRNLDEFDGNSLRSN-RTRKSRSGRKVSHKNSSKSKSLRPQRAAARNAL 899
Query: 892 SFFSKITGASTDGEDVDGSEGELSESESDLQDSYIESEESGRSLLNEQRKHSKGKGISLD 951
+ FS++ G STDGED DGSEG+LSESES L+DS IES+ES SL NEQ KHSKGK +SLD
Sbjct: 900 TLFSRMKGTSTDGEDEDGSEGDLSESESSLEDSNIESDESDGSLQNEQCKHSKGKEVSLD 959
Query: 952 DSEDVTKL-DTPESHVNAG-IRRLVLKLPVRDSNKHELQERTSDKCNQLVSVIGTSSEAH 1009
+ ED+ K + PES +NAG RRLVLK P+RDSN+ L NQ ++G+SS+A
Sbjct: 960 EFEDMDKQHEHPESCMNAGNRRRLVLKFPIRDSNRLLLAPE-----NQ-ADLVGSSSKAP 1013
Query: 1010 QEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKIRWGGVR 1069
QEA+E RGQ +K+ED+L+L GYKDGKIRWGGV+
Sbjct: 1014 QEASE---------------------------RGQPEKIEDHLDLFEGYKDGKIRWGGVK 1046
Query: 1070 ARSSKRLKIGEMMPLDANNGSGIHLDDDKEKESEVNGHVKPEKDGIDISCGEEITNCGDN 1129
AR+SKRL++ E MP D + S +D E+ +NG +PEK+ IS EI
Sbjct: 1047 ARTSKRLRVVEPMPSDTDARSRQCIDGHDATENTINGFQEPEKNYDRISPHSEI------ 1100
Query: 1130 TDEVPLKNVKNLSGENNDVYSGDASCKEQQSGFSELNYYDE-SKCVNTTDEDTTPYPNHL 1188
K S F+E YDE K VN DT
Sbjct: 1101 --------------------------KYHHSSFNECMNYDEPPKQVNMVAGDTAASSVQH 1134
Query: 1189 QNGTIQPSELKEILTPVSTKLRIRSKRILRDAD----------VENQNNGCDALHGSSLD 1238
NGT P LKE T STKLRIRSK+IL D + VE+ +NG D H ++ D
Sbjct: 1135 SNGTDHPPHLKESSTS-STKLRIRSKKILEDPEIPSDPKIKSSVEDWSNGMD-FHEATTD 1192
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357449001|ref|XP_003594776.1| Bromodomain and WD repeat-containing protein [Medicago truncatula] gi|355483824|gb|AES65027.1| Bromodomain and WD repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1683 bits (4358), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 972/1860 (52%), Positives = 1227/1860 (65%), Gaps = 167/1860 (8%)
Query: 1 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFL 60
MAL+KY+PS DAP+ ++K LS SSK E Q ++ Q ++DVDVD+ EVYFLIM FL
Sbjct: 31 MALQKYVPSGDAPTVSLKHLS-SSKAPEKTQPDVAN--QNHDMDVDVDIGEVYFLIMRFL 87
Query: 61 STGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLS-YNKLVERYP 119
S GPCH+T WNELLE+QLLPRRYHAWYSRSG SG +DDG SFPL YNKL ERYP
Sbjct: 88 SAGPCHKTCSHLWNELLENQLLPRRYHAWYSRSGASSGVPHDDGQSFPLEDYNKLAERYP 147
Query: 120 HIEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEID 179
HIEKDHLVKLLKQL++N +S S M G+ PNAADVPTLLGRGSFSLLSYD DK E+
Sbjct: 148 HIEKDHLVKLLKQLLLNKASLSPGMSTGNPPNAADVPTLLGRGSFSLLSYDGDKVNEEVK 207
Query: 180 HPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRV 239
PP +MRWPH A+QV GL LREIGGG RHHRAPSIRAACYAIAKPSTMVQKMQNIKR+
Sbjct: 208 PPPPYMRWPHTKANQVHGLHLREIGGGLPRHHRAPSIRAACYAIAKPSTMVQKMQNIKRI 267
Query: 240 RGHRNAVYCAIFDRSGRYVITGS------------------------------------- 262
RGH NAVYCAIFDRSGRYVITGS
Sbjct: 268 RGHCNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYSLASCRGHVGDITDLAVSSNNAL 327
Query: 263 -----DDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG 317
+D ++++W + ++ RGH G +T A+ S + + ++ D
Sbjct: 328 VASSSNDYIIRVWRLPDGLPISVLRGHTGAVT--------AIAFSPRPNAVYQLLSSSDD 379
Query: 318 LPISVLRGHTAAVTAIAFSPRP--------GSVYQLLSSSDDGTCRIWDARYSQFSPRIY 369
+ T + P+P G + S C ++A + ++
Sbjct: 380 GTCRIWDARYTHSTPRLYVPKPSDSTGRSSGPSSNTMPQSHQIFCCAFNANGT-----VF 434
Query: 370 IPRPSDAVA-GRNMAPSSSAGPQSHQIFCCAFNANGTVF---------VTGSSDT----- 414
+ SD +A R+ + + ++F + +A V + S D+
Sbjct: 435 VTGSSDNLARWRSRVAGACYLKNADELFKVSASAACMVAQITARLGYDIMQSQDSRPPLD 494
Query: 415 -------LAR--VWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 465
LA VWNACK + +D +QPNHEIDVLSGHENDVNYVQFSGC VASRFS ++
Sbjct: 495 ELSFQFDLAPYPVWNACKLSMEDVEQPNHEIDVLSGHENDVNYVQFSGCTVASRFSTTET 554
Query: 466 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHP-------------------- 505
KED+ PKFKNSW HDNIVTCSRDGSAIIWIP+SRRSH
Sbjct: 555 WKEDNIPKFKNSWLNHDNIVTCSRDGSAIIWIPKSRRSHVSLSNIFSFYRCFQLHSPPPL 614
Query: 506 ------KAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI 559
K+ RWT+AYHL+VPPPPMPPQP RGGPRQRILPTPRGVNMI WSLDNRFVLAAI
Sbjct: 615 KKGRVGKSGRWTRAYHLRVPPPPMPPQPQRGGPRQRILPTPRGVNMIAWSLDNRFVLAAI 674
Query: 560 MDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR 619
MDCRICVWNA+DGSLVHSLTGHTESTYVLDVHPFNPRI MSAGYDG+TIVWDIWEG+PIR
Sbjct: 675 MDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNPRIVMSAGYDGRTIVWDIWEGVPIR 734
Query: 620 IYEISRFR--------DGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQD 671
I+EISRF+ DG SIILSDD GQLYILNTGQGESQKDAKYDQFFLGDYRPL+QD
Sbjct: 735 IFEISRFKMVDGKFSPDGTSIILSDDAGQLYILNTGQGESQKDAKYDQFFLGDYRPLIQD 794
Query: 672 TYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAV 731
T+GNVLDQETQ+ P+RRNLQD LCDSAMIPYPEPYQ+ +Q+RRLGALG +WRPS LKLA+
Sbjct: 795 THGNVLDQETQITPYRRNLQDLLCDSAMIPYPEPYQSEFQRRRLGALGHDWRPSPLKLAI 854
Query: 732 GPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEPENEVQSDDNDSEYNVAEEYSTE-E 790
G DFSLD Y + PLADLD + +PLPEFID MDWEP+ EV DD DSEYN+ ++ S+ E
Sbjct: 855 GTDFSLDPAYHMLPLADLDQLAEPLPEFIDAMDWEPDIEVLVDDTDSEYNLTDDSSSRGE 914
Query: 791 KGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKKQKAEVEIMTSSGRRVKRRILDESE 850
KG SS +SGD CS ++S+D + MD +RRSKRKKQK +E MTSSGRRVKRR LDE E
Sbjct: 915 KGCSSSNASGDPGCSTDNSDDEDTHMDCIRRSKRKKQKTGIETMTSSGRRVKRRNLDECE 974
Query: 851 GNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRAAARNARSFFSKITGASTDGEDVDGS 910
GN ++ + ++ S R+ S + S + AA FSKITG +GE+ D
Sbjct: 975 GNVHSSSRSRKGKSGKKSSRRKSSKSKSSRPRRAAARNALH-LFSKITGTPNEGEE-DSL 1032
Query: 911 EGELSESESDLQDSYIESEESGRSLLNEQRKHSKGKGISLDDSEDVTKLDTPESHVNAGI 970
G+ S+S+S LQ+S I+S+ESGR+ N+QR +SKGK + L +SED + E+ VN
Sbjct: 1033 VGDSSDSDSTLQESNIDSDESGRASENDQRNYSKGKEVLLYESEDSKSHEFTETRVNR-- 1090
Query: 971 RRLVLKLPVRDSNK--HELQERTSDKCNQLVSVIGTSSEAHQEATEGNGNRVSYVGNNCS 1028
RRLVLKLP+RDS+K HE + + ++G+SS+ QE + N R S
Sbjct: 1091 RRLVLKLPIRDSSKPAHEFENQ--------AELVGSSSKTAQEFPDFNRKRPSSSEPGYC 1142
Query: 1029 SVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKIRWGGVRARSSKRLKIGEMMPLDANN 1088
+ + +ER + + D++ D+++L K+RWG VRARS+K L++ E +PL AN
Sbjct: 1143 LGNGSYSSIERTDQVKLDQVTDHVDLLE-----KLRWGVVRARSAKPLRMREDVPLGANP 1197
Query: 1089 GSGIHLDDDKEKESEVNGHVKPEKDGIDISC-GEEITNCGDNTDEVPLKNVKNLSGENND 1147
S + E+E GH + +KD S EI N GD D + N +N +G +
Sbjct: 1198 NSVECRNHLNEEEIVSVGHDREDKDFSGTSTPALEIQN-GDKVDSLTEIN-ENCAGTTSQ 1255
Query: 1148 VYSGDASCKEQQSGFSELNYYDESKCVNTTDEDTTPYPNHLQNGTIQPSELKEILTPVST 1207
++ + E + S DES + + + Q+G Q E VST
Sbjct: 1256 PFNLTEN-GEPLTASSNYRDQDESLVSASMIPENNIFVPVGQSGADQLPEPNIGFPSVST 1314
Query: 1208 KLRIRSKRILRDADVENQNNGCDALHGSSLDIKPNSLPEVLESDGTN-RTSSDRGADGSQ 1266
KLR SKR R+ + + ++ ++ ++ E + ++ G +Q
Sbjct: 1315 KLR--SKRGTRNPESPCKPETKSSVLNNNASSSNANINVNNEEHVVVVKDDNNTGVTSNQ 1372
Query: 1267 RLNA--QIDSTSEHDPLGSHSHSHDPLGSHSHSHSRKMFNVVYRRSKTNRDRTNSEGDGG 1324
R N ++D ++ S SHD L HS+ KMF VYRRS+++R TN DG
Sbjct: 1373 RENCSPEVDVQAKQ-----VSTSHDSL--EPHSNRDKMFKAVYRRSRSHRAVTNL-ADGS 1424
Query: 1325 GVGESTLNANNNNFH----ESATDGSRRTR-SMGLKTTTCDPDNVSSNLRLEQHNQPEDM 1379
G+GEST N +N+NF+ + T+ + T S+ L+ +C P+N SNL+++Q N +
Sbjct: 1425 GLGESTSNGSNSNFNVAVDSNGTNEALHTNGSLELEQGSCVPNNEQSNLKVQQGNGSCMV 1484
Query: 1380 YSGHNRSTSRCQLPHEEWGSSSKMTVGLRSTRNRRTSYLFCDSSPIDRRKTHQSLRKGSW 1439
N S ++ +L EE GSSSK+TVGLRSTRNRR++Y ++SP++RRK+ QS KGSW
Sbjct: 1485 RIPQNVSPNKGKLTEEERGSSSKLTVGLRSTRNRRSTYNIRETSPVNRRKSLQSAVKGSW 1544
Query: 1440 LMLSTHEEGSRYIPQLGDEVVYLRQGHQEYINYSGSREVGPWITVKGNIRAVEFCKVESL 1499
L+LSTHEEG RYIPQ GDEVVYLRQGHQEYI YS RE GPW+++K ++RAVE+C+V+SL
Sbjct: 1545 LLLSTHEEGCRYIPQQGDEVVYLRQGHQEYIEYSRKRESGPWVSLKEHLRAVEYCRVQSL 1604
Query: 1500 EYATASGSGDSCCKMTLKFIDPTSSVSNMTFRLTLPEVTGFPDFLVERTRFDAAIQRNWT 1559
EY+ GSGDSCCKMTL+F+DP SSV TF+LTLPEVTGFPDFLVERTRFDAAIQRNWT
Sbjct: 1605 EYSHVPGSGDSCCKMTLEFLDPNSSVVGKTFKLTLPEVTGFPDFLVERTRFDAAIQRNWT 1664
Query: 1560 CRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWE 1619
RDKC+VWWKNE + G+WW+GR+ VK KSSEFPDSPWERY+V+YK++ ++ HLHSPWE
Sbjct: 1665 RRDKCRVWWKNEDNSSGNWWEGRIQFVKAKSSEFPDSPWERYSVRYKSDLSDEHLHSPWE 1724
Query: 1620 LFDSDTQWEQPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVP 1679
LFD+DTQWEQP IDD RNKLLSA K++QS N VQD+YG+ +L+++S K+ FTNRFPVP
Sbjct: 1725 LFDADTQWEQPHIDDHTRNKLLSALTKVQQSGNTVQDRYGLHELEKISNKSKFTNRFPVP 1784
Query: 1680 LSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1739
LS+++IQSRLEN+YYR L+A+KHD++++L+NA S+F ++ ++TKIK LS+ TRTLSSL
Sbjct: 1785 LSIELIQSRLENSYYRSLDALKHDVSILLTNANSFFEKDLVMTTKIKHLSEWFTRTLSSL 1844
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356501869|ref|XP_003519746.1| PREDICTED: uncharacterized protein LOC100796497 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1668 bits (4320), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 939/1759 (53%), Positives = 1164/1759 (66%), Gaps = 138/1759 (7%)
Query: 41 AELDVDVDLREVYFLIMHFLSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDE 100
E DVD+DLRE+YFLIMHFLS GPCHRT+ F ELLEHQLLPRRYHAW+SRSG PSGD+
Sbjct: 39 VETDVDIDLREIYFLIMHFLSVGPCHRTFLNFKEELLEHQLLPRRYHAWFSRSGEPSGDD 98
Query: 101 NDD---GMSFPLSYNKLVERYPHIEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAADVPT 157
D+ G+S PL Y+ LV RYPHI KDHLVKLLKQL+++T +P + G +PNAADVPT
Sbjct: 99 ADEDDDGISLPLDYSNLVGRYPHITKDHLVKLLKQLMLSTVNPLHGKLEGSSPNAADVPT 158
Query: 158 LLGRGSFSLLSYDRDKGQNEIDHPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIR 217
LLG GSFSLL+ DR + PP +MRWPHM A+QV+GL LREIGGGFT+HHR+PSIR
Sbjct: 159 LLGYGSFSLLNVDRKTADKLVKPPPLYMRWPHMKANQVQGLSLREIGGGFTKHHRSPSIR 218
Query: 218 AACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC 277
+ACYAIAKPSTMVQKMQNIK++RGHR AVYCAIFD SGRYVI+GSDDRLVKIWSMETA+C
Sbjct: 219 SACYAIAKPSTMVQKMQNIKKLRGHRVAVYCAIFDGSGRYVISGSDDRLVKIWSMETAFC 278
Query: 278 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP 337
LASCRGHEGDITDLAVSSNNALVASASND +IRVWRLPDG+PISVLRGHT AV I FSP
Sbjct: 279 LASCRGHEGDITDLAVSSNNALVASASNDFVIRVWRLPDGMPISVLRGHTGAVNTITFSP 338
Query: 338 RPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP-----SSSAGPQS 392
+YQLLSSSDDGTCRIWDAR S +PRIY+PRP DA+ G+ AP SSS QS
Sbjct: 339 --SVIYQLLSSSDDGTCRIWDARNSH-NPRIYVPRPPDAINGKGNAPPASLPSSSNVQQS 395
Query: 393 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 452
+Q+ CCA+NANGTVFVTGSSDT ARVW+A KPNTDD++QP HE+D+LSGHENDVNYVQFS
Sbjct: 396 YQVLCCAYNANGTVFVTGSSDTYARVWSALKPNTDDAEQPIHEMDLLSGHENDVNYVQFS 455
Query: 453 GCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQ 512
GC+VAS+ +D KE++T KF+N W+CHDNIVTCSRDGSAIIW+PRSR+SH K RWT+
Sbjct: 456 GCSVASKILTSDPWKEENTLKFRNFWYCHDNIVTCSRDGSAIIWVPRSRKSHGKVGRWTR 515
Query: 513 AYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG 572
AYHLKVPPPP+PPQPPRGGPRQR LPTPRGVNMI+WSLDNRFVLAAIMDCRICVWNA DG
Sbjct: 516 AYHLKVPPPPLPPQPPRGGPRQRFLPTPRGVNMIIWSLDNRFVLAAIMDCRICVWNAVDG 575
Query: 573 SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR----- 627
SLVHSLTGHTES+YVLDVHPFNPRIAMSAGYDG+TIVWDIWEGIPIR YEI RF+
Sbjct: 576 SLVHSLTGHTESSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGIPIRTYEIGRFKLVDGK 635
Query: 628 ---DGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLA 684
DG SI+LSDDVGQ+Y LNTGQGESQKDAKYDQFFLGDYRPL+QDT G VLDQETQL
Sbjct: 636 FSPDGTSIVLSDDVGQIYFLNTGQGESQKDAKYDQFFLGDYRPLIQDTQGYVLDQETQLP 695
Query: 685 PHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQ 744
PHRRN+Q+PLCDS+M+PYPEPYQ+ +QQRRLGALGIEWRPS +K AVGPDF++ Q Y +
Sbjct: 696 PHRRNIQEPLCDSSMLPYPEPYQSQFQQRRLGALGIEWRPSLIKYAVGPDFTVGQDYPVV 755
Query: 745 PLADLDVMIDPLPEFIDVMDWEPENE-VQSDDNDSEYNVAEEYSTEEKGSLSSTSSGDSE 803
PL DL+VM++P PEF+D M WEPE + + SDD DSEYN A E S+ G S SS D E
Sbjct: 756 PLVDLEVMVEPQPEFLDAMFWEPEYDIIVSDDADSEYN-ANEDSSSAAGQGSVISSSDLE 814
Query: 804 CSAEDSEDGENPMDGLRRSKRKKQKAEVEIMTSSGRRVKRRILDESEGNAAFGNKRTRKS 863
S D + DGLRRS+RKK +MTSSGRRV++R LDE GN + N+ +KS
Sbjct: 815 YS-----DDSSNRDGLRRSRRKKHN----VMTSSGRRVRKRNLDECNGNTSGSNRLRKKS 865
Query: 864 GNRQKSSRRKSSTSKSLRPQRAAARNARSFFSKITGASTDGEDVDGSEGELSESESDLQD 923
K+S+RKSS +K+LRPQR AA NARS FS+I STDGED D E E S+S D D
Sbjct: 866 KGSSKASKRKSSIAKTLRPQRIAAHNARSMFSQIDETSTDGEDNDSDE-EASDSFQDPDD 924
Query: 924 SYIESEESGRSLLNEQRKHSKGKGISLDDSEDVTKLDT-PESHVNAGIR-RLVLKLPVRD 981
ES R + N KH + K L+ V+K ES VN R RLV+K +RD
Sbjct: 925 ----LSESEREMDN---KHLEIKKPLLEKFATVSKPPAFSESLVNVETRPRLVVKFSLRD 977
Query: 982 SNKHELQERTSDKCNQLVSVIGTSSEAHQEATEGNG--NRVSYVGNNCSSVDANCGLMER 1039
S K+ E T C +++ SS E ++ + S S V N L +
Sbjct: 978 SKKNVPTEDTRLACETQDNMVSQSSRPQPEESDQKTFPDTKSLDPALSSMVATNAELPQS 1037
Query: 1040 RGRGQFDKLEDYLNLSNGYKDGKIRWGGVRARSSKRLKIGEMMPLDANNGSGIHLDDDKE 1099
+ D E N +N R+ +++K + + + D
Sbjct: 1038 LNGNENDDKEQTENATNNLY--AFRYVEANTDQCRKMKTHTHELSRSGDALLTDAEIDDL 1095
Query: 1100 KESEVNGHVKPE-----KDGIDISCGEEITNCGDNTDEVPLKNVKNLSGENNDVY----- 1149
E NG+VKPE + + E NT+ ++ S ++
Sbjct: 1096 LEHNANGYVKPEMNLRKRRSEHVIGKLETVGSMVNTELTDFEDAPKFSSLEPSLFGNPQP 1155
Query: 1150 SGDASCKEQQSGFSELNYYDES-----KCVNTTDEDTTPYPNHLQNGTIQPSELKEI--L 1202
+ D S SG+ + N D+ KC T E+ N + S ++
Sbjct: 1156 NADGSL---TSGYDKFNEGDKGQSGSDKCAEDTLEN---------NEVVHSSHCHDLKMK 1203
Query: 1203 TPV-STKLRIRSKRILRDAD--------VENQNNGCD---ALHGSSLDIKPNSLPEVLES 1250
PV STKL I+ K+I D + ++ C + +S + PN + EV E
Sbjct: 1204 APVKSTKLVIKKKQISADTEGPCKLKIVSSKADSSCARGIGISENSSSMGPNLVTEVPEG 1263
Query: 1251 DGTNRTSSDRGADGSQRLNAQIDSTSEHDPLGSHSHSHDPLGSHSHSHSRKMFNVVYRRS 1310
+ + SS P HS+S R ++ ++R
Sbjct: 1264 EDDRKFSS-------------------------------PQLLHSYSDKRS-YDHFHKRD 1291
Query: 1311 KTNRDRTNSEGDGG---GVGESTLNANNNN-----FHESATDGSRRTRSMGLKTTTCDPD 1362
K+ + + N +G +GE T +N + + +D R+TR + +KTT+ +P
Sbjct: 1292 KSYKGKVNQDGFESFDCDMGEHTSVFSNQHGLGIGLSDVTSDPMRQTRFIRMKTTSEEPS 1351
Query: 1363 NVSSNLRLEQHNQPEDMYSGHNRSTSRCQLPHEEWGSSSKMTVGLRSTRNRRTSYLFCDS 1422
+ +++ Q Q S S++R S ++ +R+ R+R Y+ DS
Sbjct: 1352 TSNRRIKIRQ-GQSSRGKSDREDSSTRM---------SDQLHRRIRTARHRNGEYIANDS 1401
Query: 1423 SPIDRRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEVVYLRQGHQEYINYSGSREVGPWI 1482
+ RR ++ ++K SWLMLS EEG RYIPQLGDEVVYLRQGHQEYI E GPW
Sbjct: 1402 GTLTRRVSNHHVKKLSWLMLSEPEEGYRYIPQLGDEVVYLRQGHQEYIKSYSLSESGPWR 1461
Query: 1483 TVKGNIRAVEFCKVESLEYATASGSGDSCCKMTLKFIDPTSSVSNMTFRLTLPEVTGFPD 1542
+ G + A E CKVE LEYA GSGDSCCK+ L+F+DP+S V +F+LTLPE+ F D
Sbjct: 1462 SFTG-LGASEICKVEELEYAELPGSGDSCCKLKLRFLDPSSCVHGKSFKLTLPELINFTD 1520
Query: 1543 FLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYT 1602
F++E+T +D A++RNW+ RDKC VWW+NE + GSWWDGR++ V+ KS +FP+SPWERY
Sbjct: 1521 FVIEKTWYDTAMKRNWSSRDKCMVWWRNEDGKGGSWWDGRIIQVQAKSDDFPESPWERYR 1580
Query: 1603 VQYKTEPTETHLHSPWELFDSDTQWEQPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQK 1662
VQYKT+PTE HLHSPWEL+DS+ WE P ID + R+KLLS F KL++ +R ++++ +Q
Sbjct: 1581 VQYKTDPTENHLHSPWELYDSEMLWEHPHIDHEIRDKLLSYFTKLDRRVSRYEERFDIQA 1640
Query: 1663 LKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFG--RNTD 1720
L QV++K F NRFP P ++IQSRL+N+YYR +E V HDI +MLSNAE YF +N
Sbjct: 1641 LNQVAEKLEFANRFPAPFYPELIQSRLKNDYYRSVEGVNHDIMIMLSNAEEYFKITKNVQ 1700
Query: 1721 LSTKIKRLSDLVTRTLSSL 1739
L KI+R+S+ R L +
Sbjct: 1701 LVGKIRRISEWFRRKLERI 1719
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1749 | ||||||
| TAIR|locus:2158044 | 1677 | AT5G49430 "AT5G49430" [Arabido | 0.755 | 0.787 | 0.526 | 0.0 | |
| TAIR|locus:2061997 | 1520 | AT2G47410 "AT2G47410" [Arabido | 0.500 | 0.576 | 0.664 | 0.0 | |
| UNIPROTKB|E1BSG1 | 2293 | BRWD1 "Uncharacterized protein | 0.160 | 0.122 | 0.3 | 5.7e-75 | |
| RGD|1559445 | 1799 | Brwd3 "bromodomain and WD repe | 0.166 | 0.161 | 0.312 | 2.1e-70 | |
| FB|FBgn0011785 | 2232 | BRWD3 "BRWD3" [Drosophila mela | 0.208 | 0.163 | 0.259 | 1.3e-69 | |
| DICTYBASE|DDB_G0285837 | 2200 | DDB_G0285837 "BRWD group prote | 0.122 | 0.097 | 0.298 | 8.8e-55 | |
| MGI|MGI:1890651 | 2304 | Brwd1 "bromodomain and WD repe | 0.218 | 0.166 | 0.262 | 4.6e-54 | |
| RGD|1309030 | 2303 | Brwd1 "bromodomain and WD repe | 0.218 | 0.166 | 0.260 | 1.8e-52 | |
| UNIPROTKB|Q9NSI6 | 2320 | BRWD1 "Bromodomain and WD repe | 0.218 | 0.165 | 0.257 | 3.7e-52 | |
| UNIPROTKB|Q8WWQ0 | 1821 | PHIP "PH-interacting protein" | 0.243 | 0.233 | 0.270 | 8.9e-51 |
| TAIR|locus:2158044 AT5G49430 "AT5G49430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3346 (1182.9 bits), Expect = 0., P = 0.
Identities = 732/1390 (52%), Positives = 891/1390 (64%)
Query: 1 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFL 60
MALRK P D+ S MKPL+FS K+ N Q+ D Q ++D+DLREVYFL++H L
Sbjct: 1 MALRKNTPKGDSVSLPMKPLNFSRKLPGNVQIPDPDIVQSVAPNIDLDLREVYFLMLHLL 60
Query: 61 STGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPH 120
S+GPC +TY +ELLEH+LLPRRYHAWYSRSGLPSGDENDDG SFPL+Y +L +RY H
Sbjct: 61 SSGPCQKTYALLRHELLEHELLPRRYHAWYSRSGLPSGDENDDGNSFPLNYTELAKRYSH 120
Query: 121 IEKDHLVKLLKQLII--NTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEI 178
++KDHLV+LLKQL+ N +PSR + G+ A VPTLLG GSFSLLS D++ +++
Sbjct: 121 VKKDHLVELLKQLVFVSNRPNPSRGIGDGNKMIGAGVPTLLGTGSFSLLSSDKEIVGSDL 180
Query: 179 DHPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKR 238
PP MRWPHM+ADQVRG+ LREIGGGF RHHRAPSIRAACY IAKPS+MVQKMQNIKR
Sbjct: 181 KPPPIGMRWPHMHADQVRGISLREIGGGFARHHRAPSIRAACYVIAKPSSMVQKMQNIKR 240
Query: 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXX 298
+RGHRNAVYCAI DRSGRYVITGSDDRLVK+WSM+TAYCLASCRGHEGDITD
Sbjct: 241 LRGHRNAVYCAILDRSGRYVITGSDDRLVKVWSMDTAYCLASCRGHEGDITDLAVSSNNI 300
Query: 299 XXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358
DC+IRVWRLPDGLP+SVLRGHT AVTAIAFSPRPGS YQLLSSSDDGTCRIWD
Sbjct: 301 FIASASNDCVIRVWRLPDGLPVSVLRGHTGAVTAIAFSPRPGSPYQLLSSSDDGTCRIWD 360
Query: 359 ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV 418
AR +QF+PRIY+PRP G+N PSSS QSHQIFCCAFNA+G+VFVTGSSDTLARV
Sbjct: 361 ARGAQFAPRIYVPRPPSP-DGKNSGPSSSNAQQSHQIFCCAFNASGSVFVTGSSDTLARV 419
Query: 419 ---WNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475
W+A K NTDD +QPNHE+DVL+GHENDVNYVQFSGCA S+FS+ D SK+++ PKFK
Sbjct: 420 YSVWSANKTNTDDPEQPNHEMDVLAGHENDVNYVQFSGCAAGSKFSVTDYSKDENVPKFK 479
Query: 476 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXXX 535
NSWFCHDNIVTCSRDGSAIIWIPR RRSH K+ RWT+AYHLKV
Sbjct: 480 NSWFCHDNIVTCSRDGSAIIWIPRLRRSHGKSCRWTRAYHLKVPPPPMPPQPPRGGPRQR 539
Query: 536 ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP 595
ILPTPRGVNMI WSLDNRFVLAAIMDCRICVWNA+DGSLVHSLTGHT STYV+DVHPFNP
Sbjct: 540 ILPTPRGVNMIAWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTASTYVMDVHPFNP 599
Query: 596 RIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR--------DGASIILSDDVGQLYILNTG 647
RIAMSAGYDGKTIVWDIWEGIPI+IY+IS ++ DG SIILSDDVGQLYIL+TG
Sbjct: 600 RIAMSAGYDGKTIVWDIWEGIPIQIYDISHYKLVDGKFSPDGTSIILSDDVGQLYILSTG 659
Query: 648 QGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQ 707
QG+SQKDAKYDQFFLGDYRPL+QDTYGNVLDQE+QL P+RRN++DPLCDS MIPY EPYQ
Sbjct: 660 QGDSQKDAKYDQFFLGDYRPLIQDTYGNVLDQESQLQPYRRNMEDPLCDSGMIPYEEPYQ 719
Query: 708 TMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEP 767
T +Q+RRLGALG EWRPSSLKLAVGPD +LD+ YQ+ PLADLD + +PLPEFIDVM+WEP
Sbjct: 720 TTFQKRRLGALGKEWRPSSLKLAVGPDITLDRDYQMPPLADLD-LAEPLPEFIDVMEWEP 778
Query: 768 ENEVQSDDNDSEYNVAEEYXXXXXXX-XXXXXXXXXXXXXXDSEDGENPMDGLRRSKRKK 826
E ++ SD+NDSEYNV EEY +S + ++ + LRRSKRKK
Sbjct: 779 EVDILSDENDSEYNVPEEYSSGKEQECLNSSTSGESGSSSGESYEDDDHQNSLRRSKRKK 838
Query: 827 QKAEVEIMTSSGRRVKRRILDESEGNAAFGNKRTXXXXXXXXXXXXXXXXXXXLRPQXXX 886
K E IMTSSGRRVK+R DE EG A KRT RP+
Sbjct: 839 HKKEAGIMTSSGRRVKKRNFDELEG-APSNKKRTRKSRSGRKESKRKSSKSKSSRPRRAA 897
Query: 887 XXXXXSFFSKITGASTXXXXXXXXXXXXXXXXXXXXXXYIESE-ESGRSLLNEQRKHSKG 945
S+FSKITG S + E +LLN K SKG
Sbjct: 898 ARNALSWFSKITGTSKDAEEEEVSELSDSSESESTTQDSGTGDSELEVALLNGHGKQSKG 957
Query: 946 KGISLDDSED-VTKLDTPESHVNAGIRRLVLKLPVRDSNKHELQERT-SDKCNQLVSVIG 1003
K I + DS+D + D E+H A RRLVL+ PVR+S+K L E C+ +G
Sbjct: 958 KTILVCDSDDGAQQCDIRETHT-AERRRLVLRFPVRNSDKLTLLENLPGSSCDVPSPTLG 1016
Query: 1004 TSSEAHQEATEGNGNRVSYVGNNCSSVDANCGLME----RRGRGQFDKLEDYLNLS---- 1055
E + GN+ + G + S V G+++ +R RG+ + +
Sbjct: 1017 NGCT---EDSRIPGNQ--FEGLDVSKV--KWGMVKARTTKRIRGEAISSHELMGSDPEGK 1069
Query: 1056 -NGYK-DGKIRWGGVRARSSKRLKIG-EMMPLDANNGSGIHLDDDKEKESEVNGHVKPEK 1112
N K D R GV A S LK + M +D + L + ++ E++G
Sbjct: 1070 ENNVKEDSNHRGNGVTAPSCLELKTDIDDMAVDTDTVISNGLPNGGKRYPELDGSPSRVA 1129
Query: 1113 DGIDISCGEEITNCGDNTDEVP-LKNVKNLSGENNDVYSGDASCKEQQSGFSELNYYDES 1171
D + + +T+ D D +P + + + + D S +++ S S
Sbjct: 1130 DDKASNSSQNVTHRHDLIDSLPPISTTLKIRSKRVS-RAPDTSLRQEGKSLSIDQETGGS 1188
Query: 1172 KCVNTTDEDTTPYPNHLQNGTIQPSELKEILTPVSTKLRIRSKRILRDADVENQNNGCDA 1231
+N ED + T+ K+ + V T++ +R+ D +E CDA
Sbjct: 1189 DALNDGFEDAKC------DLTLDCQ--KDGV--VGTEISLRN-----DCVLELNPQICDA 1233
Query: 1232 LHGSSLDIK-PNSLPEVLESDGTNRTSSDRGADGSQRLNAQIDSTSEHDPLGSHSHSHDP 1290
L ++ D+ +S P+ + D R S + + R +A + T E P GS S H
Sbjct: 1234 LSIAN-DVPVSHSHPKRM-FDFVYRRKSRKHKNNLDR-DAAL--TKEVSP-GSCSQDHGS 1287
Query: 1291 LGSHSHSHSRKMFNVVYRRS--KTNRDRTNSEGDGGGVGESTLNANNNNFHESATDGSRR 1348
GS SH + F+ K+ T+ + + +S N N+ SA+ + R
Sbjct: 1288 -GSKSHEGASNGFHGTELNGLEKSEGSLTHIQDK---ISDSRGNQNSQEELRSASGATLR 1343
Query: 1349 TRSMGLKTTT 1358
RS + +T
Sbjct: 1344 LRSTRNRKST 1353
|
|
| TAIR|locus:2061997 AT2G47410 "AT2G47410" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3075 (1087.5 bits), Expect = 0., Sum P(3) = 0.
Identities = 594/894 (66%), Positives = 679/894 (75%)
Query: 17 MKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFLSTGPCHRTYGQFWNEL 76
M+P + + V N L D S + D+D+DLREVYFLI+HFLS GPC RT+G +E+
Sbjct: 11 MEPSNLAKLVQGNVPLQPHD-SHSSLTDLDMDLREVYFLILHFLSIGPCERTFGHLRDEI 69
Query: 77 LEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPHIEKDHLVKLLKQLIIN 136
LE LLPRRYH+W+SRSG+ SG +DDG+S PLSY+ L+ERYPHIEKDHLVKLLKQLI+N
Sbjct: 70 LEKGLLPRRYHSWWSRSGIYSGRADDDGISLPLSYDNLIERYPHIEKDHLVKLLKQLILN 129
Query: 137 TSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEIDHPPAHMRWPHMYADQVR 196
S PS + G+APNAADVPTLLG G+FSL+ + + H +++RWPHM+ADQVR
Sbjct: 130 PSFPSHMRVEGNAPNAADVPTLLGSGTFSLVDRSNNIESQKARHVASYLRWPHMHADQVR 189
Query: 197 GLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGR 256
GL LREIGGGF +HHRAPSI +AC+AIAKPSTMVQKMQNIK++RGHRNAVYCAIFDRSGR
Sbjct: 190 GLSLREIGGGFRKHHRAPSILSACHAIAKPSTMVQKMQNIKKLRGHRNAVYCAIFDRSGR 249
Query: 257 YVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPD 316
YVITGSDDRLVKIWSMETA CLASCRGHEGDITD D +IRVWRLPD
Sbjct: 250 YVITGSDDRLVKIWSMETALCLASCRGHEGDITDLAVSSNNALVASASNDFVIRVWRLPD 309
Query: 317 GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDA 376
G+PISVLRGHT AVTAIAFSPR SVYQLLSSSDDGTCRIWDARYSQ+ PRIY+P PSDA
Sbjct: 310 GMPISVLRGHTGAVTAIAFSPRQASVYQLLSSSDDGTCRIWDARYSQWLPRIYVPSPSDA 369
Query: 377 VAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 436
G S+S QSHQI CCA+NANGT+FVTGSSD+ ARVW+A KPN DD++QP HE+
Sbjct: 370 NTG-----STSNASQSHQILCCAYNANGTIFVTGSSDSNARVWSASKPNLDDAEQPTHEL 424
Query: 437 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 496
DVL GHENDVNYVQFSGCAVA + S AD+ KEDS PKFKNSWFCHDNIVTCSRDGSAIIW
Sbjct: 425 DVLRGHENDVNYVQFSGCAVAPKSSTADALKEDSYPKFKNSWFCHDNIVTCSRDGSAIIW 484
Query: 497 IPRSRRSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXXXILPTPRGVNMIVWSLDNRFVL 556
PRSR+ H K+ RW + YHLKV LPTPRGVNMI+WSLDNRFVL
Sbjct: 485 TPRSRKFHGKSGRWMKGYHLKVPPPPLPPQPPRGGPRQRFLPTPRGVNMIIWSLDNRFVL 544
Query: 557 AAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI 616
AAIMDCRICVWNAADGSLVH LTGH+ES+YVLDVHPFNPRIAMSAGYDGKTI+WDIWEGI
Sbjct: 545 AAIMDCRICVWNAADGSLVHCLTGHSESSYVLDVHPFNPRIAMSAGYDGKTIIWDIWEGI 604
Query: 617 PIRIYEISRFR--------DGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPL 668
PI++YEI RF+ DG SI+LSDDVGQ+Y LNTGQGESQK+AKYDQFFLGDYRPL
Sbjct: 605 PIKVYEIGRFKLVDGKFSQDGTSIVLSDDVGQIYFLNTGQGESQKNAKYDQFFLGDYRPL 664
Query: 669 VQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLK 728
++DT G+VLDQETQL PHRRNLQD LCDS+MIPYPEP QTM+QQRRLGALG+EWRPSS+K
Sbjct: 665 IRDTNGHVLDQETQLLPHRRNLQDLLCDSSMIPYPEPDQTMFQQRRLGALGVEWRPSSIK 724
Query: 729 LAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEPENEVQSDDNDSEYNVAEEYXX 788
+VGPDFSL Q Y + PLADLD +I+PLPEFID M WEPE+EV SDDNDSEYN AE
Sbjct: 725 FSVGPDFSLGQDYIMPPLADLDRLIEPLPEFIDAMYWEPEHEVLSDDNDSEYN-AEVSSD 783
Query: 789 XXXXXXXXXXXXXXXXXXXDSEDGENPMDGLRRSKRKKQKAEVEIMTSSGRRVKRRILDE 848
DS D EN + KR+++ +V + TSSGRR KR ILDE
Sbjct: 784 GARASPCSNSSNELECSSEDS-DVENIHESSYHWKRRRKHPKVNVSTSSGRRDKR-ILDE 841
Query: 849 SEGNAAFGNKRTXXXXXXXXXXXXXXXXXXXLRPQXXXXXXXXSFFSKITGAST 902
++ + + G KRT RPQ S SKI+G+S+
Sbjct: 842 NDSSNS-GIKRTKNRRIVVKASKRKHSDVKASRPQRAAAQNARSLLSKISGSSS 894
|
|
| UNIPROTKB|E1BSG1 BRWD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 312 (114.9 bits), Expect = 5.7e-75, Sum P(6) = 5.7e-75
Identities = 96/320 (30%), Positives = 154/320 (48%)
Query: 110 SYNKLVERYPHIEKDHLVKLLKQL--IINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLL 167
SY +LV H+ DHL+++ K++ I++ P P+ + V +LLG G SLL
Sbjct: 65 SYEELVLSNKHVAPDHLLQICKRIGPILDKEIP---------PSISRVNSLLGAGRQSLL 115
Query: 168 SYDRDKGQNEIDHPPA----HM-RWPHMYADQVRGLGLREIGGGFTRHHRAPSIRA-ACY 221
+D +N + A H R P + L E+ +RA + A +
Sbjct: 116 RTAKDC-RNTVWKGSAFAALHRGRPPEFPVNYGTPPNLVEV-------YRARQLTGYAKF 167
Query: 222 AIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASC 281
+ + P +M Q ++ +R+ GH ++VYC FDR+G + TGSDD LVKIWS A+
Sbjct: 168 STSFPGSMYQHVKMHRRILGHLSSVYCVAFDRTGHRIFTGSDDCLVKIWSTHNGRLFATL 227
Query: 282 RGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPR-PG 340
RGH +I+D D +IRVW L P++VL GHT ++T++ FSP G
Sbjct: 228 RGHSAEISDMAVNYENTMIAAGSCDKMIRVWCLRTCAPVAVLHGHTGSITSLQFSPMVKG 287
Query: 341 SVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH-QIFCCA 399
S+ ++S+ DG W Q+ +D++ N + P+ Q+ C +
Sbjct: 288 SLRYMVSTGADGNVCFW-----QWD--------TDSMKFSNRPVKFTEKPRPGVQMLCSS 334
Query: 400 FNANGTVFVTGSSDTLARVW 419
F+ G TGS+D + R++
Sbjct: 335 FSVGGMFLATGSTDHVIRMY 354
|
|
| RGD|1559445 Brwd3 "bromodomain and WD repeat domain containing 3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 315 (115.9 bits), Expect = 2.1e-70, Sum P(6) = 2.1e-70
Identities = 101/323 (31%), Positives = 149/323 (46%)
Query: 103 DGMSFPLSYNKLVERYPHIEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAAD-VPTLLGR 161
+G S+ LV HI D+L+K+ +++ P ++ + P + V TLLG
Sbjct: 49 EGKEHRRSFEDLVAANAHIPPDYLLKICERI-----GP---LLDKEIPQSVPGVQTLLGV 100
Query: 162 GSFSLLSYDRD-KGQ--NEIDHPPAHM-RWPHMYADQVRGLGLREIGGGFTRHHRAPSIR 217
G SLL +D K N H R P + + V+ + I R S R
Sbjct: 101 GRQSLLRDAKDCKNTLWNGSAFAALHRGRPPELPVNYVKPPNVVNIXS--XRQXTGCS-R 157
Query: 218 AACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC 277
+ PS+ Q ++ KR+ GH ++VYC FDRSGR + TGSDD LVKIW+ +
Sbjct: 158 ---FXHXFPSSAYQHIKMHKRILGHLSSVYCVAFDRSGRRIFTGSDDCLVKIWATDDGRL 214
Query: 278 LASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP 337
LA+ RGH +I+D D ++RVW L P++VL+GH+A++T+I F P
Sbjct: 215 LATLRGHSAEISDMAVNYENTLIAAGSCDKVVRVWCLRTCAPVAVLQGHSASITSIQFCP 274
Query: 338 RP-GSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 396
G+ L S+ DGT W R RP S G Q I
Sbjct: 275 STKGTTRYLTSTGADGTICFWQWHVKTMKFR---DRPV------KFTERSRPGVQ---IS 322
Query: 397 CCAFNANGTVFVTGSSDTLARVW 419
C +F++ G TGS+D + R++
Sbjct: 323 CSSFSSGGMFITTGSTDHVIRIY 345
|
|
| FB|FBgn0011785 BRWD3 "BRWD3" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 309 (113.8 bits), Expect = 1.3e-69, Sum P(4) = 1.3e-69
Identities = 112/432 (25%), Positives = 189/432 (43%)
Query: 110 SYNKLVERYPHIEKDHLVKLLKQL--IINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLL 167
++ +L +Y HI +HL+++ +L +++ P P+ + +LLG G +LL
Sbjct: 60 TFEELERKYKHIGANHLLEICSRLGPLVDRELP---------PSVPGINSLLGTGRQNLL 110
Query: 168 SYD---------RD--KGQNEIDHPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSI 216
RD N + P + + P D+V L RE GG R
Sbjct: 111 RTKETVYCHRSLRDYCTRLNGVSLPDSVLTKPTHNLDRV--LTGREHGGEVRRK------ 162
Query: 217 RAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY 276
+ P+ + ++ + ++R GH ++VYC +FDR+GRY+ITG+DD L+KIWS
Sbjct: 163 ------LLVPTDLYRRTKLLRRTVGHLSSVYCVLFDRTGRYIITGADDLLIKIWSAADGR 216
Query: 277 CLASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFS 336
LA+ RG +ITD D I+RVW + PI+VL HT +T++ F
Sbjct: 217 LLATLRGASSEITDIAINLDNTMLAAGSLDHILRVWDMQTTSPIAVLSAHTGMITSVNFC 276
Query: 337 PRPGS-VYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395
P P S + L+++S DG+ W + + P+P+ + P + Q+
Sbjct: 277 PSPRSDLKYLVTTSTDGSIAFWQYSTPRGQKITFAPKPTQY--HEKLRPGQA------QM 328
Query: 396 FCCAFNANGTVFVTGSSDTLARVWNACK--PN--------TD--DSDQPNHE-IDVLSGH 442
C F+ G GS+D RV+ + P TD DS Q +H + +SG
Sbjct: 329 MCTTFSPGGIFLAAGSADHHVRVYMMGEDGPKRILETEAYTDAVDSVQWSHRGLRFISGS 388
Query: 443 ENDVNYV------QFSGCAVASRFSLADSSKEDSTPKFKNS---WFCHDN-IVTCSRDGS 492
++ ++ Q+ + LA + + + K + W D ++T D +
Sbjct: 389 KDGTAHIWTFESQQWKSSKLCMTERLASCPEPEEGKRLKVTMVAWDASDRYVITAVNDFT 448
Query: 493 AIIWIPRSRRSH 504
IW +S + H
Sbjct: 449 IKIWDSKSAKLH 460
|
|
| DICTYBASE|DDB_G0285837 DDB_G0285837 "BRWD group protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 270 (100.1 bits), Expect = 8.8e-55, Sum P(7) = 8.8e-55
Identities = 72/241 (29%), Positives = 111/241 (46%)
Query: 482 DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXXXILPTPR 541
D IV+ S DG+ IIW H +W H+ + +
Sbjct: 606 DAIVSGSYDGTVIIW------RHSGGPKWD---HVIFNIKNTQRPNQANSHPKKVARSKA 656
Query: 542 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 601
++WS D+RF++ + I VWN+ DGS + HT YV HPF+ R+ MS+
Sbjct: 657 TFKNVIWSHDDRFIITTDYNM-IRVWNSLDGSFHLEMAEHTSEVYVTSCHPFDSRLIMSS 715
Query: 602 GYDGKTIVWDIWEGIPIRIYEISR--FR----------DGASIILSDDVGQLYILNTGQG 649
GYD + I+W I G I+ + + F+ DG I+++ G+ ++ G G
Sbjct: 716 GYDSQVILWSIETGEIIKKFVLQEPGFQCQILDGCFSPDGQKFIVTNSTGKWFMFELGLG 775
Query: 650 ESQKDAKY----DQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEP 705
+ K +Q+FL DY PL++D GNVLD+ TQ PH + L + +PYP+
Sbjct: 776 SDINNLKKLVPNEQYFLTDYHPLIRDANGNVLDELTQTPPHLMP-RAMLVNYQGLPYPDH 834
Query: 706 Y 706
Y
Sbjct: 835 Y 835
|
|
| MGI|MGI:1890651 Brwd1 "bromodomain and WD repeat domain containing 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 343 (125.8 bits), Expect = 4.6e-54, Sum P(4) = 4.6e-54
Identities = 115/438 (26%), Positives = 196/438 (44%)
Query: 306 DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS 365
DC++++W +G +S LRGH+A ++ +A + + + S D R+W R +
Sbjct: 207 DCLVKIWSTHNGRLLSTLRGHSAEISDMAVNYENTLI---AAGSCDKIIRVWCLRTC--A 261
Query: 366 PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV-FVTGSSDTLARVWNACKP 424
P + + ++ +P + GPQ + + + A+GTV F ++L + +P
Sbjct: 262 PVAVLQGHTGSITSLQFSPMAK-GPQRYMV---STGADGTVCFWQWDLESLKF---SPRP 314
Query: 425 NTDDSDQPNHEIDVLSGHENDVNYVQFSGCA--VASRFSLA-DSSK-----EDSTPKFKN 476
+++P + +L + +G V + L D+ + E T K +
Sbjct: 315 -LKFTEKPRPGVQMLCSSFSVGGMFLATGSTDHVIRMYFLGFDAPEKIAELESHTDKVDS 373
Query: 477 SWFCH--DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXX 534
FC+ D ++ SRDG+A IW R+ Q +
Sbjct: 374 IQFCNNGDRFLSGSRDGTARIW------------RFEQLEWRSILLDMSARISGDTSSEE 421
Query: 535 XILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN 594
P+ V MI W+ D+ V+ A+ D + VW++ G L+H+L GH + +VL+ HPF+
Sbjct: 422 ERFMKPK-VTMIAWNQDDSTVVTAVNDHVLKVWSSYTGQLLHNLLGHADEVFVLETHPFD 480
Query: 595 PRIAMSAGYDGKTIVWDIWEGIPIR-------------IYEISRFRDGASIILSDDVGQL 641
RI +SAG+DG +WDI +GI ++ +++ +DG +D G L
Sbjct: 481 SRIMLSAGHDGSIFIWDITKGIKMKHYFNMIEGQGHGAVFDCKFSQDGQHFACTDSHGHL 540
Query: 642 YILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDP--LCDSAM 699
I G + + FF DYRPL++D+ VLD++TQ APH L P L D
Sbjct: 541 LIFGFGCSKPYEKIPDQMFFHTDYRPLIRDSNNYVLDEQTQQAPH---LMPPPFLVDVDG 597
Query: 700 IPYPEPYQTMYQQRRLGA 717
P+P +Q + R A
Sbjct: 598 NPHPTKFQRLVPGRENSA 615
|
|
| RGD|1309030 Brwd1 "bromodomain and WD repeat domain containing 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 343 (125.8 bits), Expect = 1.8e-52, Sum P(5) = 1.8e-52
Identities = 114/438 (26%), Positives = 192/438 (43%)
Query: 306 DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS 365
DC++++W +G +S LRGH+A ++ +A + + + S D R+W R +
Sbjct: 207 DCLVKIWSTHNGRLLSTLRGHSAEISDMAVNYENTLI---AAGSCDKIIRVWCLRTC--A 261
Query: 366 PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV-FVTGSSDTLA------RV 418
P + + ++ +P + GPQ + + + A+GTV F ++L +
Sbjct: 262 PVAVLQGHTGSITSLQFSPMAK-GPQRYMV---STGADGTVCFWQWDLESLKFSPRPLKF 317
Query: 419 WNACKPNTDD--SDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKN 476
+P S + + +G + V + F G + + E T K +
Sbjct: 318 TEKPRPGVQMLCSSFSVGGMFLATGSTDHVIRMYFLGFEAPEKIA----ELESHTDKVDS 373
Query: 477 SWFCH--DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXX 534
FC+ D ++ SRDG+A IW R+ Q +
Sbjct: 374 IQFCNNGDRFLSGSRDGTARIW------------RFEQLEWKSILLDMAARISGDTSAEE 421
Query: 535 XILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN 594
P+ V MI W+ D+ V+ A+ D + VW++ G L+H+L GH + +VL+ HPF+
Sbjct: 422 ERFMKPK-VTMIAWNQDDSTVVTAVNDHVLKVWSSYTGQLLHNLLGHADEVFVLETHPFD 480
Query: 595 PRIAMSAGYDGKTIVWDIWEGIPIR-------------IYEISRFRDGASIILSDDVGQL 641
RI +SAG+DG +WDI +GI ++ +++ +DG +D G L
Sbjct: 481 SRIMLSAGHDGSIFIWDITKGIKMKHYFNMIEGQGHGAVFDCKFSQDGQHFACTDSHGHL 540
Query: 642 YILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDP--LCDSAM 699
I G + + FF DYRPL++D+ VLD++TQ APH L P L D
Sbjct: 541 LIFGFGCSKPYEKIPDQMFFHTDYRPLIRDSNNYVLDEQTQQAPH---LMPPPFLVDVDG 597
Query: 700 IPYPEPYQTMYQQRRLGA 717
P+P +Q + R A
Sbjct: 598 NPHPTKFQRLVPGRENSA 615
|
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| UNIPROTKB|Q9NSI6 BRWD1 "Bromodomain and WD repeat-containing protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 336 (123.3 bits), Expect = 3.7e-52, Sum P(4) = 3.7e-52
Identities = 113/438 (25%), Positives = 190/438 (43%)
Query: 306 DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS 365
DC++++W +G +S LRGH+A ++ +A + + + S D R+W R +
Sbjct: 207 DCLVKIWSTHNGRLLSTLRGHSAEISDMAVNYENTMI---AAGSCDKIIRVWCLRTC--A 261
Query: 366 PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV-FVTGSSDTLA------RV 418
P + + ++ +P + G Q + + + A+GTV F ++L +
Sbjct: 262 PVAVLQGHTGSITSLQFSPMAK-GSQRYMV---STGADGTVCFWQWDLESLKFSPRPLKF 317
Query: 419 WNACKPNTDD--SDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKN 476
+P S + + +G + V + F G + + E T K +
Sbjct: 318 TEKPRPGVQMLCSSFSVGGMFLATGSTDHVIRMYFLGFEAPEKIA----ELESHTDKVDS 373
Query: 477 SWFCH--DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXX 534
FC+ D ++ SRDG+A IW R+ Q +
Sbjct: 374 IQFCNNGDRFLSGSRDGTARIW------------RFEQLEWRSILLDMATRISGDLSSEE 421
Query: 535 XILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN 594
P+ V MI W+ ++ V+ A+ D + VWN+ G L+H+L GH + +VL+ HPF+
Sbjct: 422 ERFMKPK-VTMIAWNQNDSIVVTAVNDHVLKVWNSYTGQLLHNLMGHADEVFVLETHPFD 480
Query: 595 PRIAMSAGYDGKTIVWDIWEGIPIR-------------IYEISRFRDGASIILSDDVGQL 641
RI +SAG+DG +WDI +G ++ +++ +DG +D G L
Sbjct: 481 SRIMLSAGHDGSIFIWDITKGTKMKHYFNMIEGQGHGAVFDCKFSQDGQHFACTDSHGHL 540
Query: 642 YILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDP--LCDSAM 699
I G + + FF DYRPL++D+ VLD++TQ APH L P L D
Sbjct: 541 LIFGFGCSKPYEKIPDQMFFHTDYRPLIRDSNNYVLDEQTQQAPH---LMPPPFLVDVDG 597
Query: 700 IPYPEPYQTMYQQRRLGA 717
P+P YQ + R A
Sbjct: 598 NPHPTKYQRLVPGRENSA 615
|
|
| UNIPROTKB|Q8WWQ0 PHIP "PH-interacting protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 351 (128.6 bits), Expect = 8.9e-51, Sum P(5) = 8.9e-51
Identities = 131/484 (27%), Positives = 207/484 (42%)
Query: 306 DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS 365
DC++++W DG ++ LRGH A ++ +A + + + S D R+W R +
Sbjct: 204 DCLVKIWATDDGRLLATLRGHAAEISDMAVNYENTMI---AAGSCDKMIRVWCLRTC--A 258
Query: 366 PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV-FVTGSSDTL------ARV 418
P + S ++ +P S + + + A+GT+ F + TL A+
Sbjct: 259 PLAVLQGHSASITSLQFSPLCSGSKR----YLSSTGADGTICFWLWDAGTLKINPRPAKF 314
Query: 419 WNACKPNTDD--SDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLAD--SSKEDSTPKF 474
+P S + + +G + + V F G + S + + K DS +F
Sbjct: 315 TERPRPGVQMICSSFSAGGMFLATGSTDHIIRVYFFGSGQPEKISELEFHTDKVDSI-QF 373
Query: 475 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXX 534
N+ + V+ SRDG+A IW + R W + +
Sbjct: 374 SNT---SNRFVSGSRDGTARIWQFKRRE-------WKS---ILLDMATRPAGQNLQGIED 420
Query: 535 XILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN 594
I T V M+ W + V+ A+ + + VWN+ G L+H L GH + +VL+ HPF+
Sbjct: 421 KI--TKMKVTMVAWDRHDNTVITAVNNMTLKVWNSYTGQLIHVLMGHEDEVFVLEPHPFD 478
Query: 595 PRIAMSAGYDGKTIVWDIWEGIPIR-------------IYEISRFRDGASIILSDDVGQL 641
PR+ SAG+DG IVWD+ G+ IR +++ DG +D G L
Sbjct: 479 PRVLFSAGHDGNVIVWDLARGVKIRSYFNMIEGQGHGAVFDCKCSPDGQHFACTDSHGHL 538
Query: 642 YILNTGQGESQKDAKYDQ-FFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDP--LCDSA 698
I G S+ D DQ FF DYRPL++D VLD++TQ APH L P L D
Sbjct: 539 LIFGFGSS-SKYDKIADQMFFHSDYRPLIRDANNFVLDEQTQQAPH---LMPPPFLVDVD 594
Query: 699 MIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPE 758
P+P YQ + R + P + G + L Q Q ++ LD MI L +
Sbjct: 595 GNPHPSRYQRLVPGRE-NCREEQLIPQMGVTSSGLNQVLSQQAN-QEISPLDSMIQRLQQ 652
Query: 759 FIDV 762
D+
Sbjct: 653 EQDL 656
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | AT5G49430 | transducin family protein / WD-40 repeat family protein; transducin family protein / WD-40 repeat family protein; FUNCTIONS IN- nucleotide binding; INVOLVED IN- biological_process unknown; LOCATED IN- CUL4 RING ubiquitin ligase complex; EXPRESSED IN- 17 plant structures; EXPRESSED DURING- 6 growth stages; CONTAINS InterPro DOMAIN/s- WD40 repeat-like (InterPro-IPR011046), WD40 repeat, region (InterPro-IPR017986), WD40/YVTN repeat-like (InterPro-IPR015943), WD40 repeat (InterPro-IPR001680), Bromodomain (InterPro-IPR001487); BEST Arabidopsis thaliana protein match is- nucleotide binding ( [...] (1677 aa) | |||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | AT1G65030 | transducin family protein / WD-40 repeat family protein; This gene is predicted to encode a pro [...] (345 aa) | • | 0.599 | |||||||
 | AT2G19430 | transducin family protein / WD-40 repeat family protein; This gene is predicted to encode a pro [...] (367 aa) | • | 0.538 | |||||||
 | AT1G61210 | WD-40 repeat family protein / katanin p80 subunit, putative; WD-40 repeat family protein / kata [...] (1180 aa) | • | • | 0.536 | ||||||
 | SPA2 | SPA2 (SPA1-RELATED 2); protein binding / signal transducer; Encodes a member of the SPA (suppre [...] (1036 aa) | • | 0.467 | |||||||
 | SCD1 | SCD1 (STOMATAL CYTOKINESIS-DEFECTIVE 1); protein binding; Encodes soluble protein containing N- [...] (1187 aa) | • | • | 0.443 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1749 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-51 | |
| cd05529 | 128 | cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repe | 2e-45 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-40 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-37 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-35 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-35 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-23 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-22 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-18 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-16 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-16 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-11 | |
| smart00297 | 107 | smart00297, BROMO, bromo domain | 1e-09 | |
| pfam00439 | 84 | pfam00439, Bromodomain, Bromodomain | 1e-09 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 5e-08 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-07 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-07 | |
| cd04369 | 99 | cd04369, Bromodomain, Bromodomain | 8e-07 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 9e-07 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-06 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-05 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 5e-04 | |
| cd05520 | 103 | cd05520, Bromo_polybromo_III, Bromodomain, polybro | 7e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.001 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.002 | |
| cd05519 | 103 | cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfam | 0.002 | |
| pfam05764 | 238 | pfam05764, YL1, YL1 nuclear protein | 0.002 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 0.002 | |
| cd05525 | 106 | cd05525, Bromo_ASH1, Bromodomain; ASH1_like sub-fa | 0.002 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 182 bits (463), Expect = 5e-51
Identities = 97/379 (25%), Positives = 152/379 (40%), Gaps = 92/379 (24%)
Query: 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVS 294
+ ++GH V C F G+ + TGS D +K+W +ET L + +GH G + D+A S
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 295 SNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354
++ +AS S+D IR+W L G + L GHT+ V+++AFSP G + L SSS D T
Sbjct: 61 ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD-GRI--LSSSSRDKTI 117
Query: 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ--IFCCAFNANGTVFVTGSS 412
++WD + + + H + AF+ +GT + S
Sbjct: 118 KVWDVETGKCLTTL----------------------RGHTDWVNSVAFSPDGTFVASSSQ 155
Query: 413 DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472
D ++W+ + + L+GH +VN V FS D K
Sbjct: 156 DGTIKLWDL---------RTGKCVATLTGHTGEVNSVAFSP----------DGEK----- 191
Query: 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGP 532
+++ S DG+ +W + + T H
Sbjct: 192 -----------LLSSSSDGTIKLWDLSTGKCLG-----TLRGHEN--------------- 220
Query: 533 RQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHP 592
GVN + +S D + + D I VW+ G V +L+GHT S L P
Sbjct: 221 ---------GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP 271
Query: 593 FNPRIAMSAGYDGKTIVWD 611
R+A S DG +WD
Sbjct: 272 DGKRLA-SGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|99958 cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repeat I_like subfamily | Back alignment and domain information |
|---|
Score = 159 bits (405), Expect = 2e-45
Identities = 57/129 (44%), Positives = 80/129 (62%), Gaps = 2/129 (1%)
Query: 1611 ETHLHSPWELFDSDTQWEQPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKT 1670
L S WELFD WEQP I D+ R +L+S KL S +Y + +
Sbjct: 2 YNPLSSEWELFDPG--WEQPHIRDEERERLISGLDKLLLSLQLEIAEYFEYPVDLRAWYP 59
Query: 1671 NFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSD 1730
++ NR PVP+ L+ I+SRLEN YYR LEA++HD+ ++LSNAE++ N++++ K KRLSD
Sbjct: 60 DYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAETFNEPNSEIAKKAKRLSD 119
Query: 1731 LVTRTLSSL 1739
+ R LSSL
Sbjct: 120 WLLRILSSL 128
|
WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 128 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 8e-40
Identities = 67/233 (28%), Positives = 106/233 (45%), Gaps = 38/233 (16%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT 289
++ + ++ + GH + V F GR + + S D+ +K+W +ET CL + RGH +
Sbjct: 80 LETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVN 139
Query: 290 DLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS 349
+A S + VAS+S D I++W L G ++ L GHT V ++AFSP +LLSSS
Sbjct: 140 SVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG---EKLLSSS 196
Query: 350 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ--IFCCAFNANGTVF 407
DGT ++WD + H+ + AF+ +G +
Sbjct: 197 SDGTIKLWDLS----------------------TGKCLGTLRGHENGVNSVAFSPDGYLL 234
Query: 408 VTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS--GCAVAS 458
+GS D RVW+ + LSGH N V + +S G +AS
Sbjct: 235 ASGSEDGTIRVWDLRTGE---------CVQTLSGHTNSVTSLAWSPDGKRLAS 278
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 3e-37
Identities = 74/346 (21%), Positives = 119/346 (34%), Gaps = 92/346 (26%)
Query: 277 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFS 336
+ +GH G +T +A S + L+A+ S D I+VW L G + L+GHT V +A S
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 337 PRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ-- 394
L S S D T R+WD + G H
Sbjct: 61 A---DGTYLASGSSDKTIRLWDLE---------TGECVRTLTG-------------HTSY 95
Query: 395 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454
+ AF+ +G + + S D +VW+ + L GH + VN V FS
Sbjct: 96 VSSVAFSPDGRILSSSSRDKTIKVWDVETGK---------CLTTLRGHTDWVNSVAFSPD 146
Query: 455 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 514
F + + S+DG+ +W R+
Sbjct: 147 ---GTF-----------------------VASSSQDGTIKLWDLRT-------------- 166
Query: 515 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSL 574
G + VN + +S D +L++ D I +W+ + G
Sbjct: 167 ---------------GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211
Query: 575 VHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRI 620
+ +L GH + P + + S DG VWD+ G ++
Sbjct: 212 LGTLRGHENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQT 256
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 2e-35
Identities = 54/189 (28%), Positives = 89/189 (47%), Gaps = 27/189 (14%)
Query: 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAV 293
+ + +RGH + V F G +V + S D +K+W + T C+A+ GH G++ +A
Sbjct: 126 KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAF 185
Query: 294 SSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGT 353
S + + S+S+D I++W L G + LRGH V ++AFSP Y L S S+DGT
Sbjct: 186 SPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP---DGYLLASGSEDGT 242
Query: 354 CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ--IFCCAFNANGTVFVTGS 411
R+WD R + + H + A++ +G +GS
Sbjct: 243 IRVWDLRTGECVQTL----------------------SGHTNSVTSLAWSPDGKRLASGS 280
Query: 412 SDTLARVWN 420
+D R+W+
Sbjct: 281 ADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 4e-35
Identities = 70/287 (24%), Positives = 121/287 (42%), Gaps = 56/287 (19%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT 289
++ + ++ ++GH V G Y+ +GS D+ +++W +ET C+ + GH ++
Sbjct: 38 LETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS 97
Query: 290 DLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS 349
+A S + +++S+S D I+VW + G ++ LRGHT V ++AFSP V SSS
Sbjct: 98 SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVA---SSS 154
Query: 350 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 409
DGT ++WD R + + G ++ AF+ +G ++
Sbjct: 155 QDGTIKLWDLRTGKCVATLT-------------------GHTG-EVNSVAFSPDGEKLLS 194
Query: 410 GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS-------GCAVASRFSL 462
SSD ++W+ +T + L GHEN VN V FS + +
Sbjct: 195 SSSDGTIKLWD---LSTGK------CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRV 245
Query: 463 ADSSKEDSTPKFKNSWFCHDN-------------IVTCSRDGSAIIW 496
D + H N + + S DG+ IW
Sbjct: 246 WDLRTGECVQTLS----GHTNSVTSLAWSPDGKRLASGSADGTIRIW 288
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 3e-23
Identities = 62/304 (20%), Positives = 100/304 (32%), Gaps = 88/304 (28%)
Query: 319 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA 378
L+GHT VT +AFSP L + S DGT ++WD + +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKL---LATGSGDGTIKVWDLETGELLRTLKGH------- 50
Query: 379 GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDV 438
+ + A +A+GT +GSSD R+W+ + +
Sbjct: 51 -------------TGPVRDVAASADGTYLASGSSDKTIRLWDL---------ETGECVRT 88
Query: 439 LSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIP 498
L+GH + V+ V FS + + SRD + +W
Sbjct: 89 LTGHTSYVSSVAFSP---------------------DGRI-----LSSSSRDKTIKVW-- 120
Query: 499 RSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA 558
G + VN + +S D FV ++
Sbjct: 121 ---------------------------DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASS 153
Query: 559 IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618
D I +W+ G V +LTGHT + P ++ S+ DG +WD+ G +
Sbjct: 154 SQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLL-SSSSDGTIKLWDLSTGKCL 212
Query: 619 RIYE 622
Sbjct: 213 GTLR 216
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 102 bits (254), Expect = 2e-22
Identities = 90/376 (23%), Positives = 142/376 (37%), Gaps = 54/376 (14%)
Query: 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASC-RGHEGDITDLAVSSNNALVAS 302
+ + + D + + + S D VK+W + T L GH +T LA S + L+AS
Sbjct: 113 SKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLAS 172
Query: 303 ASN-DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY 361
S+ D I++W L G P+S L GHT V+++AFSP + S S DGT R+WD
Sbjct: 173 GSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPD--GGLLIASGSSDGTIRLWDLST 230
Query: 362 SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA 421
+ V +F+ +G++ +GSSD R+W
Sbjct: 231 GKLLRSTLSGHSDSVV--------------------SSFSPDGSLLASGSSDGTIRLW-- 268
Query: 422 CKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC-----AVASRFSLADSSKEDSTPKFKN 476
D + + LSGH + V V FS + +S ++ E
Sbjct: 269 ------DLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL 322
Query: 477 SWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI 536
+ H+ V+ + W R G +
Sbjct: 323 TLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD----------------LRTGKPLKT 366
Query: 537 LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR 596
L V + +S D R V + D + +W+ + GSL+ +L GHT LD P
Sbjct: 367 LEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKS 426
Query: 597 IAMSAGYDGKTIVWDI 612
+A S D +WD+
Sbjct: 427 LA-SGSSDNTIRLWDL 441
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 2e-18
Identities = 49/270 (18%), Positives = 89/270 (32%), Gaps = 73/270 (27%)
Query: 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF 451
+ + C AF+ +G + TGS D +VW+ + + L GH V V
Sbjct: 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDL---------ETGELLRTLKGHTGPVRDVAA 59
Query: 452 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 511
S AD + + + S D + +W + T
Sbjct: 60 S----------ADGTY----------------LASGSSDKTIRLWDLETGECV-----RT 88
Query: 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD 571
H V+ + +S D R + ++ D I VW+
Sbjct: 89 LTGHTS------------------------YVSSVAFSPDGRILSSSSRDKTIKVWDVET 124
Query: 572 GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR--------IYEI 623
G + +L GHT+ + P +A S+ DG +WD+ G + + +
Sbjct: 125 GKCLTTLRGHTDWVNSVAFSPDGTFVA-SSSQDGTIKLWDLRTGKCVATLTGHTGEVNSV 183
Query: 624 SRFRDGASIILSDDVGQLYILNTGQGESQK 653
+ DG ++ S G + + + G+
Sbjct: 184 AFSPDGEKLLSSSSDGTIKLWDLSTGKCLG 213
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.4 bits (207), Expect = 1e-16
Identities = 53/207 (25%), Positives = 96/207 (46%), Gaps = 27/207 (13%)
Query: 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY-CLASCRGHEGDITDLAVSSNN 297
+ GH ++V + F G + +GS D +++W + ++ L + GH + +A S +
Sbjct: 238 LSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDG 296
Query: 298 ALVASASNDCIIRVWRLPDGLPISVLR--GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355
L+AS S+D +R+W L G +S L GH V++++FSP + + SDDGT R
Sbjct: 297 KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLL--VSGGSDDGTIR 354
Query: 356 IWDARYSQFSPRIYIPRPSDAVA----GRNMAPSSSAG-----------------PQSHQ 394
+WD R + + +V+ GR ++ S+ G + +
Sbjct: 355 LWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSR 414
Query: 395 IFCCAFNANGTVFVTGSSDTLARVWNA 421
+ F+ +G +GSSD R+W+
Sbjct: 415 VTSLDFSPDGKSLASGSSDNTIRLWDL 441
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.0 bits (206), Expect = 2e-16
Identities = 57/280 (20%), Positives = 110/280 (39%), Gaps = 30/280 (10%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVI-TGSDDRLVKIWSMETAYCLASCRGHEGDI 288
++ + + + GH + V F G +I +GS D +++W + T L S D
Sbjct: 185 LRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS 244
Query: 289 TDLAVSSNNALVASASNDCIIRVWRLP-DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLS 347
+ S + +L+AS S+D IR+W L + L GH+++V ++AFSP L S
Sbjct: 245 VVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK---LLAS 301
Query: 348 SSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVF 407
S DGT R+WD + + + V +F+ +G++
Sbjct: 302 GSSDGTVRLWDLETGKLLSSLTLKGHEGPV------------------SSLSFSPDGSLL 343
Query: 408 VTG-SSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSS 466
V+G S D R+W+ + + + + +S + S + L+ S
Sbjct: 344 VSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGS 403
Query: 467 KEDSTPKFKNSWFC------HDNIVTCSRDGSAIIWIPRS 500
+ + ++ + S D + +W ++
Sbjct: 404 LLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.6 bits (166), Expect = 1e-11
Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 5/133 (3%)
Query: 234 QNIKRVRGHRNAVYCAIFDRSG-RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLA 292
+ ++GH V F G V GSDD +++W + T L + GH ++ ++
Sbjct: 319 LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVS 377
Query: 293 VSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG 352
S + +V+S S D +R+W L G + L GHT+ VT++ FSP S L S S D
Sbjct: 378 FSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKS---LASGSSDN 434
Query: 353 TCRIWDARYSQFS 365
T R+WD + S S
Sbjct: 435 TIRLWDLKTSLKS 447
|
Length = 466 |
| >gnl|CDD|197636 smart00297, BROMO, bromo domain | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 1e-09
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 1679 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTL 1736
P+ L I+ +LEN Y +E D +M SNA +Y G ++++ K+L + L
Sbjct: 47 PMDLKTIKKKLENGKYSSVEEFVADFNLMFSNARTYNGPDSEVYKDAKKLEKFFEKKL 104
|
Length = 107 |
| >gnl|CDD|215921 pfam00439, Bromodomain, Bromodomain | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-09
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 1671 NFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDL 1721
++ P+ L I+ +L++ Y+ L D+ ++ SNA +Y G ++D+
Sbjct: 28 DYYEVIKEPMDLSTIRQKLKSGKYKSLAEFLKDVELIFSNAITYNGEDSDI 78
|
Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 84 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 5e-08
Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 317 GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358
G + L+GHT VT++AFSP L S SDDGT R+WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSP---DGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-07
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 316 DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358
G + L+GHT VT++AFSP L S SDDGT ++WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSP---DGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.9 bits (128), Expect = 5e-07
Identities = 55/317 (17%), Positives = 98/317 (30%), Gaps = 67/317 (21%)
Query: 344 QLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN 403
+ + S S + + SD++ S I AF+ +
Sbjct: 17 KKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPD 76
Query: 404 GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLA 463
G + ++GSSD ++W D D I L G + S LA
Sbjct: 77 GELLLSGSSDGTIKLW--------DLDNGEKLIKSLEGLHDS------------SVSKLA 116
Query: 464 DSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPM 523
SS + ++ +S DG+ +W +
Sbjct: 117 LSSPDGNSILLASSSL----------DGTVKLWDLST----------------------- 143
Query: 524 PPQPPRGGPRQRILPTPRGVNMIVWSLDNR-FVLAAIMDCRICVWNAADGSLVHSLTGHT 582
G + + V + +S D + + +D I +W+ G + +L GHT
Sbjct: 144 -----PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHT 198
Query: 583 ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRI-------YEISRF-RDGASIIL 634
+ L P + S DG +WD+ G +R +S F DG+ +
Sbjct: 199 DPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLAS 258
Query: 635 SDDVGQLYILNTGQGES 651
G + + + S
Sbjct: 259 GSSDGTIRLWDLRSSSS 275
|
Length = 466 |
| >gnl|CDD|99922 cd04369, Bromodomain, Bromodomain | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 8e-07
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 1679 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTL 1736
P+ L I+ +L+N Y+ LE + D+ ++ SNA++Y G + + K+L L + L
Sbjct: 42 PMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPGSPIYKDAKKLEKLFEKLL 99
|
Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. Length = 99 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 9e-07
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 277 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312
L + +GH G +T +A S + +AS S+D I++W
Sbjct: 4 LLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-06
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 277 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312
L + +GH G +T +A S + L+AS S+D +RVW
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-06
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWS 271
+ +K ++GH V F G+Y+ +GSDD +K+W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 3e-06
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWS 271
+ ++ ++GH V F G + +GSDD V++W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.9 bits (115), Expect = 2e-05
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT 289
++ + +K + GH + V F GR V +GS D V++W + T L + GH +T
Sbjct: 358 LRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVT 416
Query: 290 DLAVSSNNALVASASNDCIIRVWRLPDGLPISVL 323
L S + +AS S+D IR+W L L
Sbjct: 417 SLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-04
Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 9/85 (10%)
Query: 574 LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR--------IYEISR 625
L +L GHT + P +A + DG VWD+ G +R + +++
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLA-TGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59
Query: 626 FRDGASIILSDDVGQLYILNTGQGE 650
DG + + + + GE
Sbjct: 60 SADGTYLASGSSDKTIRLWDLETGE 84
|
Length = 289 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 5e-04
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 571 DGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611
G L+ +L GHT + P +A S DG +WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLA-SGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|99951 cd05520, Bromo_polybromo_III, Bromodomain, polybromo repeat III | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 7e-04
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 1679 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLV 1732
P+SL I+++L+N Y LE ++ D+ +M NA+ Y N+ + ++L L+
Sbjct: 46 PISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVPNSRIYKDAEKLQKLM 99
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. Length = 103 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.001
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 572 GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611
G L+ +L GHT + P +A S DG VWD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLA-SGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.002
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 392 SHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ + AF+ +G + +GS D RVW+
Sbjct: 11 TGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|99950 cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfamily, specific to fungi | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 1679 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESY 1714
P++LD I+ R+E Y+ LE D +M +NA +Y
Sbjct: 46 PIALDQIKRRIEGRAYKSLEEFLEDFHLMFANARTY 81
|
SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 103 |
| >gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 11/130 (8%)
Query: 772 QSDDNDSEYNVAEEYSTEEKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKKQKAEV 831
+ +++D E+ + EE EE S S D ++D E+GE + R K+KK+
Sbjct: 35 EEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEP-ESDDEEEGEKELQREERLKKKKRVKTK 93
Query: 832 EIMTSSGRRVKRRILDESEGNAAFG----------NKRTRKSGNRQKSSRRKSSTSKSLR 881
+ ++ K+ AA T R+KSSR + +K
Sbjct: 94 AYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWAPTLLDSPRRKSSRSSTVQNKEAT 153
Query: 882 PQRAAARNAR 891
+R R R
Sbjct: 154 HERLKEREIR 163
|
The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.002
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 14/126 (11%)
Query: 282 RGHEGDITDLAVSS-NNALVASASNDCIIRVWRLPDG--------LPISVLRGHTAAVTA 332
+GH I DL + + ++AS S D IRVW +P P +L+GH ++
Sbjct: 71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISI 130
Query: 333 IAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA---GRNMAPSSSAG 389
I ++P + Y + SS D IWD + + +I +P+ ++ N+ + G
Sbjct: 131 IDWNPM--NYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVG 188
Query: 390 PQSHQI 395
H I
Sbjct: 189 KHMHII 194
|
Length = 568 |
| >gnl|CDD|99955 cd05525, Bromo_ASH1, Bromodomain; ASH1_like sub-family | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.002
Identities = 18/70 (25%), Positives = 32/70 (45%)
Query: 1662 KLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDL 1721
L + ++ R P+ L I+ ++ YY+ EA D+ + NAE Y+GR + +
Sbjct: 31 NLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEKYYGRKSPI 90
Query: 1722 STKIKRLSDL 1731
+ RL
Sbjct: 91 GRDVCRLRKA 100
|
ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 106 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1749 | |||
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.98 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.98 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.97 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.97 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.97 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.97 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.97 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.97 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.96 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.96 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.96 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.96 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.96 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.95 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.95 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.94 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.94 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.94 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.94 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.94 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.94 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.94 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.94 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.93 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.93 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.93 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.93 | |
| PTZ00421 | 493 | coronin; Provisional | 99.93 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.92 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.92 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.92 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.92 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.92 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.92 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.91 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.91 | |
| PTZ00420 | 568 | coronin; Provisional | 99.91 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.91 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.91 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.91 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.91 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.9 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.9 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.9 | |
| PTZ00421 | 493 | coronin; Provisional | 99.9 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.89 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.89 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.89 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.89 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.89 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.89 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.89 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.89 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.89 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.89 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.88 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| PTZ00420 | 568 | coronin; Provisional | 99.88 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.87 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.87 | |
| PF06507 | 83 | Auxin_resp: Auxin response factor; InterPro: IPR01 | 99.87 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.87 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.87 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.86 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.86 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.86 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.86 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.86 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.86 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.85 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.85 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.85 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.84 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.84 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.84 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.83 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.83 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.83 | |
| cd05529 | 128 | Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like | 99.83 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.82 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.82 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.81 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.81 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.81 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.81 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.8 | |
| cd05497 | 107 | Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily | 99.8 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.8 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.8 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.79 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.79 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.79 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.78 | |
| cd05505 | 97 | Bromo_WSTF_like Bromodomain; Williams syndrome tra | 99.78 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.77 | |
| cd05504 | 115 | Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_li | 99.77 | |
| cd05508 | 99 | Bromo_RACK7 Bromodomain, RACK7_like subfamily. RAC | 99.77 | |
| cd05496 | 119 | Bromo_WDR9_II Bromodomain; WDR9 repeat II_like sub | 99.77 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.77 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.77 | |
| cd05510 | 112 | Bromo_SPT7_like Bromodomain; SPT7_like subfamily. | 99.77 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.77 | |
| cd05507 | 104 | Bromo_brd8_like Bromodomain, brd8_like subgroup. I | 99.76 | |
| cd05495 | 108 | Bromo_cbp_like Bromodomain, cbp_like subfamily. Cb | 99.76 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.76 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.76 | |
| cd05509 | 101 | Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. | 99.75 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.75 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.75 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.73 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.73 | |
| cd05503 | 97 | Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like s | 99.73 | |
| cd05516 | 107 | Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, s | 99.73 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.72 | |
| cd05513 | 98 | Bromo_brd7_like Bromodomain, brd7_like subgroup. T | 99.72 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.72 | |
| cd05511 | 112 | Bromo_TFIID Bromodomain, TFIID-like subfamily. Hum | 99.72 | |
| cd05501 | 102 | Bromo_SP100C_like Bromodomain, SP100C_like subfami | 99.71 | |
| cd05512 | 98 | Bromo_brd1_like Bromodomain; brd1_like subfamily. | 99.71 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.71 | |
| cd05528 | 112 | Bromo_AAA Bromodomain; sub-family co-occurring wit | 99.71 | |
| cd05502 | 109 | Bromo_tif1_like Bromodomain; tif1_like subfamily. | 99.71 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.71 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.7 | |
| cd05500 | 103 | Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfami | 99.7 | |
| cd05520 | 103 | Bromo_polybromo_III Bromodomain, polybromo repeat | 99.7 | |
| cd05515 | 105 | Bromo_polybromo_V Bromodomain, polybromo repeat V. | 99.69 | |
| cd05499 | 102 | Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfam | 99.69 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.69 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.69 | |
| cd05517 | 103 | Bromo_polybromo_II Bromodomain, polybromo repeat I | 99.68 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.68 | |
| KOG1474 | 640 | consensus Transcription initiation factor TFIID, s | 99.67 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.67 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.67 | |
| smart00297 | 107 | BROMO bromo domain. | 99.67 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.67 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.67 | |
| cd05506 | 99 | Bromo_plant1 Bromodomain, uncharacterized subfamil | 99.67 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.66 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.66 | |
| cd05518 | 103 | Bromo_polybromo_IV Bromodomain, polybromo repeat I | 99.66 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.66 | |
| cd05519 | 103 | Bromo_SNF2 Bromodomain, SNF2-like subfamily, speci | 99.66 | |
| cd05525 | 106 | Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 | 99.65 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.65 | |
| cd05524 | 113 | Bromo_polybromo_I Bromodomain, polybromo repeat I. | 99.65 | |
| cd05498 | 102 | Bromo_Brdt_II_like Bromodomain, Brdt_like subfamil | 99.65 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.65 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.64 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.64 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.64 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.63 | |
| cd05521 | 106 | Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_lik | 99.63 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.61 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.6 | |
| cd05522 | 104 | Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_l | 99.59 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.57 | |
| cd05492 | 109 | Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family | 99.57 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.57 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.56 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.56 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.56 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.56 | |
| PF00439 | 84 | Bromodomain: Bromodomain; InterPro: IPR001487 Brom | 99.54 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.53 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.52 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.52 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.52 | |
| cd04369 | 99 | Bromodomain Bromodomain. Bromodomains are found in | 99.51 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.49 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.49 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.48 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.48 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.47 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.47 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.46 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.46 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.44 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.43 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.42 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.41 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.38 | |
| cd05526 | 110 | Bromo_polybromo_VI Bromodomain, polybromo repeat V | 99.38 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.38 | |
| COG5076 | 371 | Transcription factor involved in chromatin remodel | 99.37 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.36 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.35 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.34 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.33 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.32 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.32 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.3 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.29 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.28 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.27 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.25 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.25 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.25 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.25 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.24 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.24 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.23 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.23 | |
| KOG1472 | 720 | consensus Histone acetyltransferase SAGA/ADA, cata | 99.23 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.21 | |
| KOG1245 | 1404 | consensus Chromatin remodeling complex WSTF-ISWI, | 99.21 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.21 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.19 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.18 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.18 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.17 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.17 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.16 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.14 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.09 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.09 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.09 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.07 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.07 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.06 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.05 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.05 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.05 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.04 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 99.01 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.0 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.99 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.98 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.96 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.96 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.94 | |
| cd05491 | 119 | Bromo_TBP7_like Bromodomain; TBP7_like subfamily, | 98.94 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.94 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.92 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.91 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.89 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.89 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.88 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.88 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.87 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.86 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.85 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.84 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.84 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.83 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.82 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.8 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.79 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.77 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.73 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.71 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.67 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.66 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.64 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.59 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.58 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.56 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.55 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.53 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.52 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.51 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.46 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.43 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.42 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.41 | |
| KOG0008 | 1563 | consensus Transcription initiation factor TFIID, s | 98.39 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.38 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.37 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.33 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.32 | |
| cd05494 | 114 | Bromodomain_1 Bromodomain; uncharacterized subfami | 98.32 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.3 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.3 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.24 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.22 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.22 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.21 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.18 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.17 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.17 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.15 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.15 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.12 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.11 | |
| KOG0955 | 1051 | consensus PHD finger protein BR140/LIN-49 [General | 98.1 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.09 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.08 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.08 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.07 | |
| KOG1827 | 629 | consensus Chromatin remodeling complex RSC, subuni | 98.07 | |
| KOG1474 | 640 | consensus Transcription initiation factor TFIID, s | 98.0 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.97 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.96 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.95 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.94 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 97.92 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.9 | |
| KOG1472 | 720 | consensus Histone acetyltransferase SAGA/ADA, cata | 97.86 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.85 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.82 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.81 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.79 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.74 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.7 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.67 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.67 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.65 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.64 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.63 | |
| KOG0008 | 1563 | consensus Transcription initiation factor TFIID, s | 97.63 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.62 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.6 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.58 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.58 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.57 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.56 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.55 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.55 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.54 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.49 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.26 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.25 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.13 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.08 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.04 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.0 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.98 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.97 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.95 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.92 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.86 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.84 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 96.84 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.76 | |
| KOG1828 | 418 | consensus IRF-2-binding protein CELTIX-1, contains | 96.74 | |
| KOG1828 | 418 | consensus IRF-2-binding protein CELTIX-1, contains | 96.74 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 96.71 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 96.69 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.59 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.57 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.48 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.37 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.36 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.27 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.23 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.22 | |
| COG5076 | 371 | Transcription factor involved in chromatin remodel | 96.2 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.2 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.19 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.12 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.06 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.04 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.04 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.02 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 95.92 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.83 | |
| PRK10115 | 686 | protease 2; Provisional | 95.57 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.53 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.47 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.45 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 95.29 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.17 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.14 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 95.02 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 94.99 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 94.9 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 94.8 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 94.43 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 94.34 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 94.3 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 94.15 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 94.05 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 93.91 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 93.84 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 93.81 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 93.78 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 93.67 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 93.66 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 93.61 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 93.61 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 93.5 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 93.38 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 93.32 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 93.21 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 93.1 | |
| cd05493 | 131 | Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL- | 92.98 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 92.63 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 92.49 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 92.14 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 91.77 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 91.25 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 90.8 | |
| PRK10115 | 686 | protease 2; Provisional | 90.56 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 90.19 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 89.97 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 89.94 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 89.87 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 89.08 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 89.0 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 88.86 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 88.75 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 88.22 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 87.74 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 87.72 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 86.93 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 86.72 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 86.25 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 86.12 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 85.81 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 84.66 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 84.23 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 83.78 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 83.75 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 82.75 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 82.29 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 81.89 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 81.84 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 81.81 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 81.14 | |
| PF08513 | 27 | LisH: LisH; InterPro: IPR013720 The LisH motif is | 81.11 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 81.01 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 80.4 |
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-142 Score=1280.28 Aligned_cols=1081 Identities=53% Similarity=0.833 Sum_probs=833.9
Q ss_pred CCcchhhHHHHHHHHhccCCCchhHHHHHHHHHHhccCchhHHHHHHhcCCCCCCCCCccccchhhHHHHhhhCCCCChH
Q 000270 45 VDVDLREVYFLIMHFLSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPHIEKD 124 (1749)
Q Consensus 45 ~~~~~~El~FLI~hFL~~gp~~~ta~~L~~El~e~~fL~kr~d~WlEal~l~~~~~~~~g~~~~~~l~eL~k~~~~i~~~ 124 (1749)
+.+|++|+||||+|||+.|||.+++++|.+|++++++|+.+++.| .+..+....++|+-.|+||..+
T Consensus 11 ~~l~lsevyflil~~lS~gPcert~~vl~~elee~~ll~pr~~~W-------------~sn~~~dd~eslvls~~hI~kd 77 (1113)
T KOG0644|consen 11 VNLDLSEVYFLILHYLSAGPCERTAQVLRQELEEYSLLPPRYHDW-------------ESNSGNDDGESLVLSYKHIAKD 77 (1113)
T ss_pred cCcchhhHHHHHHhhcccCchhhcchhhhhhhhhhhccCcccccc-------------ccCCCCcccceeeccccccchH
Confidence 348999999999999999999999999999999999999999999 4444556667777779999999
Q ss_pred HHHHHHHHHHHccCCCCccccCCCCCC---CccccccccCCcccccccCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 000270 125 HLVKLLKQLIINTSSPSRAMIGGDAPN---AADVPTLLGRGSFSLLSYDRDKGQNEIDHPPAHMRWPHMYADQVRGLGLR 201 (1749)
Q Consensus 125 ~Ll~ll~r~l~~~~~~~~~~~~~~~P~---~~~vsaLl~~g~~Sll~s~~~~~~~~~~~p~~~~r~p~~~~~~V~~l~~r 201 (1749)
||+++|+||+.. ...+.||. .+.|++|||+|+|+|++....+... ..++..++|||||+++|+++.++
T Consensus 78 hll~i~kqlv~~-------~d~~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~--~~~~s~~~~~h~~~~~~~~~sl~ 148 (1113)
T KOG0644|consen 78 HLLQILKQLVPM-------LDKPIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHT--VWKGSAFRWPHMHADQVRGVSLR 148 (1113)
T ss_pred HHHHHHHHhccC-------cCCCCCcceeeeecccchhcchhHHHHhhhhhcccc--cccccccccccccCcccccceec
Confidence 999999999652 23445666 7889999999999999998877655 44567899999999999999999
Q ss_pred cccCcccccCCCcchhhhhccccCCCccccccceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEE
Q 000270 202 EIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASC 281 (1749)
Q Consensus 202 ~~gg~~~~~~~~~~l~~~~~~~a~p~~~~~~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL 281 (1749)
..||+|..|++++.+.++|+.+++|..++++++.+++|.||.++|+|++|+..|++|+||++|..|+||.++++.++.++
T Consensus 149 s~~~~~~~h~~a~~i~~at~~~akPgtmvqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~ 228 (1113)
T KOG0644|consen 149 SIGGGFEIHHRAPSIGCATFSIAKPGTMVQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASC 228 (1113)
T ss_pred cCCcchhhhhcCcccccceeeecCcHHHHHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCC
Q 000270 282 RGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY 361 (1749)
Q Consensus 282 ~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~t 361 (1749)
+||.+.|+.++.+.++.++|++|.|..|+||.+.++.++.+|.+|++.|++|+|+|- ++.+.||++++||.+
T Consensus 229 rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~-------~sss~dgt~~~wd~r- 300 (1113)
T KOG0644|consen 229 RGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPR-------ASSSDDGTCRIWDAR- 300 (1113)
T ss_pred CCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCcc-------ccCCCCCceEecccc-
Confidence 999999999999999999999999999999999999999999999999999999994 368999999999987
Q ss_pred CcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecC
Q 000270 362 SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG 441 (1749)
Q Consensus 362 g~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~g 441 (1749)
....++.+.+.... ....+-++.|-..+..+++|+.|+....|.+..
T Consensus 301 --~~~~~y~prp~~~~-------------~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~------------------ 347 (1113)
T KOG0644|consen 301 --LEPRIYVPRPLKFT-------------EKDLVDSILFENNGDRFLTGSRDGEARNHEFEQ------------------ 347 (1113)
T ss_pred --ccccccCCCCCCcc-------------cccceeeeeccccccccccccCCcccccchhhH------------------
Confidence 34445544443222 223455666666777777777777766665521
Q ss_pred CCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCC
Q 000270 442 HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPP 521 (1749)
Q Consensus 442 H~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~ 521 (1749)
++|.... -.+++.+.|
T Consensus 348 -------l~~~~~~--------------------------lif~t~ssd------------------------------- 363 (1113)
T KOG0644|consen 348 -------LAWRSNL--------------------------LIFVTRSSD------------------------------- 363 (1113)
T ss_pred -------hhhhccc--------------------------eEEEecccc-------------------------------
Confidence 1111110 011111110
Q ss_pred CCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEE
Q 000270 522 PMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 601 (1749)
Q Consensus 522 ~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSg 601 (1749)
-..+++++-.+..+++|++.+|.+++.+.+|...++.|.+||++.++..++
T Consensus 364 -----------------------------~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msa 414 (1113)
T KOG0644|consen 364 -----------------------------LSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSA 414 (1113)
T ss_pred -----------------------------ccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhc
Confidence 013455666778899999999999999999999999999999999999999
Q ss_pred eCCCcEEEEeCCCCceEEEEeeee-------cc-CCCEEEEEcCCCeEEEEECCCCcccccccceeeecCCCcceeEcCC
Q 000270 602 GYDGKTIVWDIWEGIPIRIYEISR-------FR-DGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTY 673 (1749)
Q Consensus 602 s~DGtIrVWDl~tGk~l~tl~~~~-------~s-DG~~LAsgd~DG~I~IWdl~tGe~~k~~~~~~fFs~D~r~Lv~d~~ 673 (1749)
+.||.+.|||+..|.+++.+..++ |+ ||+.++..+..|+++|+.+++|+.++..++++||..||++|++|++
T Consensus 415 g~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k~ak~dqffl~dyrplirdTn 494 (1113)
T KOG0644|consen 415 GYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQKKAKYDQFFLGDYRPLIRDTN 494 (1113)
T ss_pred cCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCccccccccceEeecCccccccccc
Confidence 999999999999999999887553 33 9999999999999999999999999999999999999999999999
Q ss_pred CcEEecccccCCCCCCCCCccccCCCCCCCCcchhhhhhhcccccccccCCCCCceeeccCccCCcCcccCCccCccccc
Q 000270 674 GNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMI 753 (1749)
Q Consensus 674 G~Vld~~tq~~Phl~~~~~ll~D~~g~P~p~~~Q~l~p~R~l~~~~~a~sPdg~~lAvg~~~~ld~~~~~~p~~~~~~~i 753 (1749)
|+|++++||+.||++ +++++||.+++|||.++|+++|+|++++. ++.|+|+
T Consensus 495 ~~vldqeTq~~ph~~-~p~~l~ds~~iphpe~yqtl~q~rr~sa~---------------------dh~mp~l------- 545 (1113)
T KOG0644|consen 495 GYVLDQETQLAPHRN-PPDFLCDSDMIPHPEPYQTLFQGRRLSAL---------------------DHLMPPL------- 545 (1113)
T ss_pred chhhhhHhhhccccC-CCCceeccCCCcCCchhhhcccccccchh---------------------hhcCCcc-------
Confidence 999999999999954 59999999999999999999999864443 6777777
Q ss_pred CCCcccccccccccCcccCCCCCCccccccccccccccCCCCCCCCCCCCCccCCCCCCCCCCCchhhhHhhhhhcccce
Q 000270 754 DPLPEFIDVMDWEPENEVQSDDNDSEYNVAEEYSTEEKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKKQKAEVEI 833 (1749)
Q Consensus 754 ~~~~~~~~~~~w~pe~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (1749)
++++.|+||||.+|++++++||||.+.+++
T Consensus 546 ----~fia~~~~E~e~~Vls~~nds~~~~~~es~---------------------------------------------- 575 (1113)
T KOG0644|consen 546 ----EFIATMDWEPEEQVLSDQNDSEYNRSPESL---------------------------------------------- 575 (1113)
T ss_pred ----cchhhhccccchhhhhhcccccccCCcccc----------------------------------------------
Confidence 788999999999999999999998744411
Q ss_pred eccccccccccccccccCCcccCCcccccccccccccccccCCccCCChhHHHHHHHhHHhhhhcCcCCCCCCCCCCCCC
Q 000270 834 MTSSGRRVKRRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRAAARNARSFFSKITGASTDGEDVDGSEGE 913 (1749)
Q Consensus 834 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 913 (1749)
++.++- .+..++.++.|.+.+-+++|++++|++||+|+++|||+..|++|++++-+.+.
T Consensus 576 -------------seldg~-isq~krt~n~r~g~k~s~~~hg~s~ss~~~R~~~Rn~~~~isk~sg~~~~~~s------- 634 (1113)
T KOG0644|consen 576 -------------SELDGM-ISQLKRTQNQRMGAKQSKRKHGLSKSSRPPRAAARNASSDISKISGISLDRKS------- 634 (1113)
T ss_pred -------------hhhhhh-hhhhhhhhccccccchhhccCCCCccccCCcccccccchhhccCCCccccccc-------
Confidence 333333 44455666778888999999999999999999999999999999988876543
Q ss_pred CCCccccccccccccccccccchHHhhhcccCcccccccccccCCCCCcccccccCcceEEEEeeccccCcccccccccc
Q 000270 914 LSESESDLQDSYIESEESGRSLLNEQRKHSKGKGISLDDSEDVTKLDTPESHVNAGIRRLVLKLPVRDSNKHELQERTSD 993 (1749)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 993 (1749)
++.+...|+... .+.+..+++.|...-| .++++
T Consensus 635 -g~~e~~~q~~~~------------------------------~p~eq~~~~~~~~~wR--~e~~v-------------- 667 (1113)
T KOG0644|consen 635 -GQVEGVTQMHQN------------------------------APSEQIATLRTLQAWR--REVVV-------------- 667 (1113)
T ss_pred -cCCccchhhccC------------------------------CCHHHHhhhhHHHHhh--cccCc--------------
Confidence 222222222111 1111111111000000 00000
Q ss_pred cccccccccccCcccccccccCCCCcccccCCCCCCCCcccccccccCCCccccccccccccCcccCCceeecccccccc
Q 000270 994 KCNQLVSVIGTSSEAHQEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKIRWGGVRARSS 1073 (1749)
Q Consensus 994 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1073 (1749)
|+
T Consensus 668 ----------------------------------------ce-------------------------------------- 669 (1113)
T KOG0644|consen 668 ----------------------------------------CE-------------------------------------- 669 (1113)
T ss_pred ----------------------------------------cc--------------------------------------
Confidence 00
Q ss_pred cccccccCCCccCCCCCCcccCccccccccccCCCCCCCCCCCCCccccccccCCCCCCCcccccccccCCCCCcccCCC
Q 000270 1074 KRLKIGEMMPLDANNGSGIHLDDDKEKESEVNGHVKPEKDGIDISCGEEITNCGDNTDEVPLKNVKNLSGENNDVYSGDA 1153 (1749)
Q Consensus 1074 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1153 (1749)
...++.|... +.. .. +
T Consensus 670 --------~legt~pe~e-------------------d~~-~~----~-------------------------------- 685 (1113)
T KOG0644|consen 670 --------ELEGTFPELE-------------------DEA-MA----V-------------------------------- 685 (1113)
T ss_pred --------cccccCcccc-------------------ccc-cc----c--------------------------------
Confidence 0000000000 000 00 0
Q ss_pred cccccccCCcccccCCCCccccCCCCCCCCCCCCCCCCCCCCcccccccCCceeeeeeeccccccCccccC------CCC
Q 000270 1154 SCKEQQSGFSELNYYDESKCVNTTDEDTTPYPNHLQNGTIQPSELKEILTPVSTKLRIRSKRILRDADVEN------QNN 1227 (1749)
Q Consensus 1154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 1227 (1749)
|.++ ++ .. -.+..++.+|++|.+-..+--++.+ .++
T Consensus 686 -------------dtde---v~---------------------rn-g~kngRKrk~~l~~~~Snksd~vtlV~~d~~~~~ 727 (1113)
T KOG0644|consen 686 -------------DTDE---VE---------------------RN-GYKNGRKRKLELRHPLSNKSDSVTLVSQDLADQS 727 (1113)
T ss_pred -------------ccch---hh---------------------hc-CCCcccccchhccCccccccccchhhhhhhhccc
Confidence 0000 00 00 0001111122232222111000000 000
Q ss_pred Cc-ccccCCCCCCCCCCCCcccccCCCCCccCCCCCCCcccccccccccCCCCCCCCCcccCCCCCCCCCCCccchhhhh
Q 000270 1228 GC-DALHGSSLDIKPNSLPEVLESDGTNRTSSDRGADGSQRLNAQIDSTSEHDPLGSHSHSHDPLGSHSHSHSRKMFNVV 1306 (1749)
Q Consensus 1228 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1306 (1749)
+| +.+.+..| +.+.|||-. ++.. ...|..+. .....++--.+
T Consensus 728 ~~~s~aP~~~l---------------------d~lNDgfsD-------------~kiD-~t~D~se~--~gs~~Eis~Rn 770 (1113)
T KOG0644|consen 728 TCVSRAPNGGL---------------------DSLNDGFSD-------------VKID-LTLDCSED--SGSGEEISLRN 770 (1113)
T ss_pred ceeeeCCcccc---------------------ccccccccc-------------cccc-chhhhhhc--CCcccceeeec
Confidence 11 00000111 111122211 1111 33333333 33444555556
Q ss_pred hhcccccccCCCCCCCCCCCCCccccCCCCCCCCCCCCCcccccccccee-eccCCCccccccccccCCCCcccccCCCc
Q 000270 1307 YRRSKTNRDRTNSEGDGGGVGESTLNANNNNFHESATDGSRRTRSMGLKT-TTCDPDNVSSNLRLEQHNQPEDMYSGHNR 1385 (1749)
Q Consensus 1307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1385 (1749)
-||+.++.+.....+.++ .+.++.+++.. +.++. ..+.+.
T Consensus 771 drr~eS~~~esds~SSa~---------------------sv~l~dgsi~~~tsrrg------------------Ri~k~~ 811 (1113)
T KOG0644|consen 771 DRRSESNPEESDSLSSAY---------------------SVWLADGSINLQTSRRG------------------RITKFC 811 (1113)
T ss_pred chhhccCcccccchhhhh---------------------heecccCCccccccccc------------------cccccC
Confidence 677766665543222211 23344444443 22222 234566
Q ss_pred CCCCCCCCc--cccCCCCccccccccccccccccccCCCCccccccccccccccccceecccCCCCCCCCCCCCEEEEec
Q 000270 1386 STSRCQLPH--EEWGSSSKMTVGLRSTRNRRTSYLFCDSSPIDRRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEVVYLR 1463 (1749)
Q Consensus 1386 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wl~~~~~~~~~~YvPq~Gd~VvYf~ 1463 (1749)
.++.+.|+. ++|.++.+. +.+.|++... ...+..-.+.++++.+.+||++++||++|||||||||||+|||
T Consensus 812 ~st~a~Lt~e~~~~p~~~~~-----~s~s~s~~~~--~p~~~~~~~~~~~~~~~sWltls~hee~~ryipQmgDEViyfr 884 (1113)
T KOG0644|consen 812 SSTEAELTTELSSPPCSQDK-----GSGSKSHKRS--TPAPLENMKPQQLFEKPSWLTLSIHEEGCRYIPQMGDEVIYFR 884 (1113)
T ss_pred ccchhhhhhcccCCCccccc-----cccccCcccC--CCccccccchhhhcCCceeEEeehhhcCCcccccccceeehhh
Confidence 666777777 568877777 5566666544 4445555566699999999999999999999999999999999
Q ss_pred ccchhhhhhcCCCCCCCcccccC-CCCcceeEEEEeeeEEecCCCCceEEEEEEeeecCCCCCCCceEEEEeCCCCCCCC
Q 000270 1464 QGHQEYINYSGSREVGPWITVKG-NIRAVEFCKVESLEYATASGSGDSCCKMTLKFIDPTSSVSNMTFRLTLPEVTGFPD 1542 (1749)
Q Consensus 1464 QGH~e~~~~~~~~~~~~~~~~~~-~l~~~~~C~V~~i~y~~~~~~~~~~~~~tL~~~~~~~~~~~~~F~v~y~~~~~~~d 1542 (1749)
|||+|||+++..... +|..+.+ ++-+++.|+|+.|.|...++++++||+|+|+++||.+..+.+.|+++|+++.++||
T Consensus 885 Qghqeyl~~~~~n~~-~~~~~~p~~~~~v~~~kv~kl~~~~y~~~~~s~c~m~l~~idp~s~~~~k~F~ltlpdlv~fpD 963 (1113)
T KOG0644|consen 885 QGHQEYLEAVRLNNI-ELNNKEPWNKMAVEICKVEKLVYITYPGSGDSCCKMKLAVIDPASKLMDKSFKLTLPDLVTFPD 963 (1113)
T ss_pred hhhHHHHhhhhhccc-cccccCcccccchhhheeeeeeeeeccCCCcchheeeeeeecchhhhhhccceeecccccCcch
Confidence 999999999887765 5544333 68899999999999999999999999999999999999999999999999999999
Q ss_pred eEeehhhHHHHHcCCcCCCCceEEeecCCCCCCCceEEEEEEEecCCCCCCCCCCCceeEEEECCCCCcccccCcCcccc
Q 000270 1543 FLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFD 1622 (1749)
Q Consensus 1543 FiV~~~~y~~a~~~~w~~G~rf~m~fe~e~~~~~~~~~GtI~~~~~~~p~~p~S~W~~l~V~Wd~~~~~~~rvSPWEiep 1622 (1749)
|||++++|++|++|+|++|+|||+||.++.+.+++||+|+|.++++.+|+||+|||+||.|+||++ |.+.|||||++|
T Consensus 964 FlV~rsrYd~AiQrnW~~~d~crvwwrda~~e~g~WWeG~ils~~pksp~fpdSpwery~v~~~~~--e~~~~spwe~~~ 1041 (1113)
T KOG0644|consen 964 FLVERSRYDAAIQRNWTCRDKCRVWWRDAGEEDGAWWEGRILSVKPKSPDFPDSPWERYIVRYDNT--ETELHSPWEMEP 1041 (1113)
T ss_pred hhhhhhhHHHHHhhccccccceeEEEccCCCcCCceeeeeeeeccCCCCCCCCCcceeEEEEecCC--cccccCccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999986 889999999988
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHHHhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHH
Q 000270 1623 SDTQWEQPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKH 1702 (1749)
Q Consensus 1623 ~~~~~~~p~idpe~r~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~ 1702 (1749)
++.. |.+.++.|+.|+.|+.||||+|||+.++|.+
T Consensus 1042 i~de---------------------------------------------~~~~fpvpls~evi~~rlEn~yYrs~e~~~h 1076 (1113)
T KOG0644|consen 1042 IPDE---------------------------------------------VDNRFPVPLSLEVIRSRLENNYYRSQEALRH 1076 (1113)
T ss_pred Cccc---------------------------------------------cCCCCCCcccHHHHHHHHHhhhhhhhHhhhc
Confidence 7721 8889999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcC
Q 000270 1703 DIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1739 (1749)
Q Consensus 1703 Dv~li~~N~~~fN~~~s~~~~~a~~l~~~~~~~l~~~ 1739 (1749)
||..|+.||++|++.+..+.-+|..|..||.+.|.++
T Consensus 1077 dvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~Tlpk~ 1113 (1113)
T KOG0644|consen 1077 DVSVMLSNAETFFGRNKNVAIKISFLSPWFDRTLPKL 1113 (1113)
T ss_pred chhhhhcccceeecccccHHHHhhhcchhhhhhccCC
Confidence 9999999999999999999999999999999998764
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-45 Score=414.00 Aligned_cols=353 Identities=25% Similarity=0.415 Sum_probs=299.9
Q ss_pred ceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEE
Q 000270 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1749)
Q Consensus 234 ~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWD 313 (1749)
.+...+.||.++|.|++|+|+|..||||+.|.++++||+.|...++++++|...|.|++|+|||+.||+|+.||+|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceE-EEecCCCCceEEEEeccCCC--cceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCC
Q 000270 314 LPDGLPI-SVLRGHTAAVTAIAFSPRPG--SVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGP 390 (1749)
Q Consensus 314 l~tgk~l-~tL~gHs~~VtsIaFSPdg~--~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~ 390 (1749)
..+|+++ ..|.+|...|++++|.|-.- ...+||+++.||.|+|||+..+.++..+ .+
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l--------------------sg 245 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL--------------------SG 245 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe--------------------cc
Confidence 9998765 57899999999999987531 1238999999999999999988877665 46
Q ss_pred CCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCC
Q 000270 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDS 470 (1749)
Q Consensus 391 h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~ 470 (1749)
|+..|+|+.|--+| +|++|+.|++|++|+... +.....+.+|...|+.++.+.+-......+........
T Consensus 246 HT~~VTCvrwGG~g-liySgS~DrtIkvw~a~d---------G~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~ 315 (480)
T KOG0271|consen 246 HTASVTCVRWGGEG-LIYSGSQDRTIKVWRALD---------GKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPK 315 (480)
T ss_pred CccceEEEEEcCCc-eEEecCCCceEEEEEccc---------hhHHHhhcccchheeeeeccchhhhhccccccccccCC
Confidence 89999999997665 899999999999999954 56788899999999999998653211111111111000
Q ss_pred CC-cc---------cccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCC
Q 000270 471 TP-KF---------KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP 540 (1749)
Q Consensus 471 ~~-~~---------~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~ 540 (1749)
.. .. ...-..+..|++|+.|+++.+|+... ...++.++.+|.
T Consensus 316 ~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~----------------------------~kkpi~rmtgHq 367 (480)
T KOG0271|consen 316 SFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFK----------------------------SKKPITRMTGHQ 367 (480)
T ss_pred ChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccc----------------------------cccchhhhhchh
Confidence 00 00 00112347899999999999998653 235677888999
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceEEE
Q 000270 541 RGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRI 620 (1749)
Q Consensus 541 ~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l~t 620 (1749)
.-|+.+.||||+++||+|+.|..|++||..+|+.+.+|.||-+.|+.++|+. +.++|+||+.|.+++||++.+.++...
T Consensus 368 ~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~D 446 (480)
T KOG0271|consen 368 ALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQD 446 (480)
T ss_pred hheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeeccc
Confidence 9999999999999999999999999999999999999999999999999999 889999999999999999999888776
Q ss_pred Eeee--------eccCCCEEEEEcCCCeEEEEE
Q 000270 621 YEIS--------RFRDGASIILSDDVGQLYILN 645 (1749)
Q Consensus 621 l~~~--------~~sDG~~LAsgd~DG~I~IWd 645 (1749)
+.++ +.+||..+++|+.|..+++|.
T Consensus 447 LpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 447 LPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 6643 667999999999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=378.15 Aligned_cols=330 Identities=25% Similarity=0.399 Sum_probs=287.1
Q ss_pred CCCCCCccccccccccccccCcccccCCCcchhhhhccccCCCccccccceEEEEccCCCCEEEEEECCCCCEEEEEeCC
Q 000270 185 MRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDD 264 (1749)
Q Consensus 185 ~r~p~~~~~~V~~l~~r~~gg~~~~~~~~~~l~~~~~~~a~p~~~~~~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~D 264 (1749)
......|...|-++.|.+.|.. +.....+...-.|...+-.++++++||...|.||+|+|||+.||+|+.|
T Consensus 108 ssS~~GH~e~Vl~~~fsp~g~~---------l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~d 178 (480)
T KOG0271|consen 108 SSSIAGHGEAVLSVQFSPTGSR---------LVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKD 178 (480)
T ss_pred ccccCCCCCcEEEEEecCCCce---------EEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccC
Confidence 3445677888888888775542 3333444444567777888899999999999999999999999999999
Q ss_pred cEEEEEECCCCeEE-EEEccCCCCeEEEEEcC-----CCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccC
Q 000270 265 RLVKIWSMETAYCL-ASCRGHEGDITDLAVSS-----NNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPR 338 (1749)
Q Consensus 265 GtVrIWDl~Tg~~l-~tL~gHs~~VtsLafSP-----Dg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPd 338 (1749)
|+|++||..+|+++ ..|.+|...|++|+|.| ..++||+++.||.|+|||+..+.++..+.+|+.+|+||.|--+
T Consensus 179 g~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~ 258 (480)
T KOG0271|consen 179 GSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE 258 (480)
T ss_pred CeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC
Confidence 99999999998765 56999999999999976 5679999999999999999999999999999999999999877
Q ss_pred CCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEc-----------CCC---
Q 000270 339 PGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN-----------ANG--- 404 (1749)
Q Consensus 339 g~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafS-----------PDG--- 404 (1749)
+ ++++|+.|++|++|+...|.+...+ .+|.+.|+.++++ |.|
T Consensus 259 g----liySgS~DrtIkvw~a~dG~~~r~l--------------------kGHahwvN~lalsTdy~LRtgaf~~t~~~~ 314 (480)
T KOG0271|consen 259 G----LIYSGSQDRTIKVWRALDGKLCREL--------------------KGHAHWVNHLALSTDYVLRTGAFDHTGRKP 314 (480)
T ss_pred c----eEEecCCCceEEEEEccchhHHHhh--------------------cccchheeeeeccchhhhhccccccccccC
Confidence 5 8999999999999999988877665 4567777777665 223
Q ss_pred ----------------------CEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCccccccc
Q 000270 405 ----------------------TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSL 462 (1749)
Q Consensus 405 ----------------------~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~ 462 (1749)
..|++|+.|.++.+|+... ..+++..+.+|..-|+.+.|+|++
T Consensus 315 ~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~--------~kkpi~rmtgHq~lVn~V~fSPd~------- 379 (480)
T KOG0271|consen 315 KSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFK--------SKKPITRMTGHQALVNHVSFSPDG------- 379 (480)
T ss_pred CChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccc--------cccchhhhhchhhheeeEEECCCc-------
Confidence 3599999999999999843 244677789999999999999998
Q ss_pred ccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCC
Q 000270 463 ADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRG 542 (1749)
Q Consensus 463 ~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~ 542 (1749)
.+|++++-|..|++|+.++++ .+..+.+|-..
T Consensus 380 -------------------r~IASaSFDkSVkLW~g~tGk-----------------------------~lasfRGHv~~ 411 (480)
T KOG0271|consen 380 -------------------RYIASASFDKSVKLWDGRTGK-----------------------------FLASFRGHVAA 411 (480)
T ss_pred -------------------cEEEEeecccceeeeeCCCcc-----------------------------hhhhhhhccce
Confidence 899999999999999998744 45567889999
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 000270 543 VNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1749)
Q Consensus 543 VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWD 611 (1749)
|..++||.|.++|++|+.|.+++||++.+.++...|.||.+.|+++.|+| ++..+++|+.|..+++|.
T Consensus 412 VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwsp-DG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 412 VYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSP-DGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecC-CCceeecCCCceEEEeec
Confidence 99999999999999999999999999999999999999999999999999 778889999999999995
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=367.92 Aligned_cols=287 Identities=28% Similarity=0.453 Sum_probs=266.8
Q ss_pred EEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCC--CcEEEEEeCCCeEEEEEC
Q 000270 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSN--NALVASASNDCIIRVWRL 314 (1749)
Q Consensus 237 ~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPD--g~lLASGS~DGtIrVWDl 314 (1749)
..=-|-+.+|..+.|+.|+..|||||.+|.++||+..+...+.+|.||.+.|.++.|+|. +..||||+.||+|++|++
T Consensus 169 ~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 169 CSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred hhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence 333477889999999999999999999999999999999999999999999999999996 679999999999999999
Q ss_pred CCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCc
Q 000270 315 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1749)
Q Consensus 315 ~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~ 394 (1749)
.+..++..|.+|...|..++|+|+|+ +|++++.|.+-++||+.++..+.. ..+|...
T Consensus 249 ~~e~~l~~l~gH~~RVs~VafHPsG~---~L~TasfD~tWRlWD~~tk~ElL~--------------------QEGHs~~ 305 (459)
T KOG0272|consen 249 SQETPLQDLEGHLARVSRVAFHPSGK---FLGTASFDSTWRLWDLETKSELLL--------------------QEGHSKG 305 (459)
T ss_pred CCCcchhhhhcchhhheeeeecCCCc---eeeecccccchhhcccccchhhHh--------------------hcccccc
Confidence 99899999999999999999999998 999999999999999998875433 2578999
Q ss_pred eEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcc
Q 000270 395 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 474 (1749)
Q Consensus 395 Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~ 474 (1749)
|.+|+|.+||.++++|+.|..-+|||+++ +.++..+.+|...|..|.|+|+|
T Consensus 306 v~~iaf~~DGSL~~tGGlD~~~RvWDlRt---------gr~im~L~gH~k~I~~V~fsPNG------------------- 357 (459)
T KOG0272|consen 306 VFSIAFQPDGSLAATGGLDSLGRVWDLRT---------GRCIMFLAGHIKEILSVAFSPNG------------------- 357 (459)
T ss_pred cceeEecCCCceeeccCccchhheeeccc---------CcEEEEecccccceeeEeECCCc-------------------
Confidence 99999999999999999999999999987 56799999999999999999998
Q ss_pred cccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcC-CCC
Q 000270 475 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL-DNR 553 (1749)
Q Consensus 475 ~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSP-DG~ 553 (1749)
-.|+|||.|++++|||++... ....+.+|..-|+.|.|+| .|.
T Consensus 358 -------y~lATgs~Dnt~kVWDLR~r~-----------------------------~ly~ipAH~nlVS~Vk~~p~~g~ 401 (459)
T KOG0272|consen 358 -------YHLATGSSDNTCKVWDLRMRS-----------------------------ELYTIPAHSNLVSQVKYSPQEGY 401 (459)
T ss_pred -------eEEeecCCCCcEEEeeecccc-----------------------------cceecccccchhhheEecccCCe
Confidence 689999999999999998633 3456778999999999998 789
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 000270 554 FVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1749)
Q Consensus 554 ~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWD 611 (1749)
+|+|++.|++++||...++.++++|.||.+.|.+++.++ ++.+++|++.|.+|++|.
T Consensus 402 fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~-d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 402 FLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISP-DSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEEcccCcceeeecCCCcccchhhcCCccceEEEEecc-CCceEEEeccCceeeecc
Confidence 999999999999999999999999999999999999999 888999999999999995
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=360.20 Aligned_cols=467 Identities=18% Similarity=0.273 Sum_probs=359.9
Q ss_pred cccccceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCC-CeEE-EEEccCCCCeEEEEEcCCCcEEEEEeCC
Q 000270 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET-AYCL-ASCRGHEGDITDLAVSSNNALVASASND 306 (1749)
Q Consensus 229 ~~~~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~T-g~~l-~tL~gHs~~VtsLafSPDg~lLASGS~D 306 (1749)
.+........+.+|...|+-+.|||.|-|+|+|...|.|+|||... ...+ .+++.-.++|.+|+|+.|++.|++.++.
T Consensus 45 ~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEG 124 (603)
T KOG0318|consen 45 NIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEG 124 (603)
T ss_pred ECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecC
Confidence 3445566788999999999999999999999999999999999865 3333 3577778999999999999999988764
Q ss_pred ----CeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCC
Q 000270 307 ----CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 382 (1749)
Q Consensus 307 ----GtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~ 382 (1749)
|.+.+|| +|..+..+.||...|+++.|-|. +++.+++|++|++|.+|+-.- +
T Consensus 125 rerfg~~F~~D--SG~SvGei~GhSr~ins~~~Kps--RPfRi~T~sdDn~v~ffeGPP--------------------F 180 (603)
T KOG0318|consen 125 RERFGHVFLWD--SGNSVGEITGHSRRINSVDFKPS--RPFRIATGSDDNTVAFFEGPP--------------------F 180 (603)
T ss_pred ccceeEEEEec--CCCccceeeccceeEeeeeccCC--CceEEEeccCCCeEEEeeCCC--------------------e
Confidence 5677776 78889999999999999999996 457999999999999997432 2
Q ss_pred CCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeec---CCCCCeEEEEEcCCCcccc
Q 000270 383 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS---GHENDVNYVQFSGCAVASR 459 (1749)
Q Consensus 383 ~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~---gH~~~V~sVafSpdg~as~ 459 (1749)
........|...|.|+.|+|||.+||+++.||.|.+||-.++ ..+..+. +|.+.|++|+|+|++
T Consensus 181 KFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg---------e~vg~l~~~~aHkGsIfalsWsPDs---- 247 (603)
T KOG0318|consen 181 KFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG---------EKVGELEDSDAHKGSIFALSWSPDS---- 247 (603)
T ss_pred eeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCc---------cEEEEecCCCCccccEEEEEECCCC----
Confidence 223344678889999999999999999999999999998664 3444454 899999999999998
Q ss_pred cccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccc------------ccc--ccccCCCCCCCCC
Q 000270 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR------------WTQ--AYHLKVPPPPMPP 525 (1749)
Q Consensus 460 ~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~------------~~~--~~~l~v~~~~~~~ 525 (1749)
..|++++.|.+++|||+.+..+..+... |.. ...+.+.......
T Consensus 248 ----------------------~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~l 305 (603)
T KOG0318|consen 248 ----------------------TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYL 305 (603)
T ss_pred ----------------------ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEe
Confidence 7999999999999999998765422211 221 1222233333333
Q ss_pred CCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEe-cCCCCCeEEEEEcCCCCcEEEEEeCC
Q 000270 526 QPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL-TGHTESTYVLDVHPFNPRIAMSAGYD 604 (1749)
Q Consensus 526 ~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL-~gH~~~VtsLafSPdd~rlLaSgs~D 604 (1749)
.+....+...+.+|...|++++.++|+++|++|+.||.|.-|+..+|..-... .+|+..|.+++.+. ...++++|+|
T Consensus 306 n~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~--~~~~~t~g~D 383 (603)
T KOG0318|consen 306 NPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE--SGELFTIGWD 383 (603)
T ss_pred cccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecC--CCcEEEEecC
Confidence 44455577889999999999999999999999999999999999988776544 78999999999876 2456789999
Q ss_pred CcEEEEeCCCCc------------eE--E-----------------EEee----------------eeccCCCEEEEEcC
Q 000270 605 GKTIVWDIWEGI------------PI--R-----------------IYEI----------------SRFRDGASIILSDD 637 (1749)
Q Consensus 605 GtIrVWDl~tGk------------~l--~-----------------tl~~----------------~~~sDG~~LAsgd~ 637 (1749)
.++++-++..+. ++ . .+.. ...+|+..+|+|+.
T Consensus 384 d~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~ 463 (603)
T KOG0318|consen 384 DTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQ 463 (603)
T ss_pred CeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecc
Confidence 999999763211 10 0 0110 01229999999999
Q ss_pred CCeEEEEECCCCccc--------ccccceeeecCCCcce-eEcCCCcEEecccccCCCCCCCCCccccCCCCCCCCcchh
Q 000270 638 VGQLYILNTGQGESQ--------KDAKYDQFFLGDYRPL-VQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQT 708 (1749)
Q Consensus 638 DG~I~IWdl~tGe~~--------k~~~~~~fFs~D~r~L-v~d~~G~Vld~~tq~~Phl~~~~~ll~D~~g~P~p~~~Q~ 708 (1749)
||.|+||.+..++.. ...+....|+||+..| +.|.++.|+....+..-.....|.|+...
T Consensus 464 Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtak----------- 532 (603)
T KOG0318|consen 464 DGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAK----------- 532 (603)
T ss_pred cceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeee-----------
Confidence 999999999776643 2234558999999999 56888887654443211111224433322
Q ss_pred hhhhhcccccccccCCCCCceeeccCccCCcCcccCCccCcccccC---CCcccccccccccCcccCCCCCCc
Q 000270 709 MYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMID---PLPEFIDVMDWEPENEVQSDDNDS 778 (1749)
Q Consensus 709 l~p~R~l~~~~~a~sPdg~~lAvg~~~~ld~~~~~~p~~~~~~~i~---~~~~~~~~~~w~pe~e~~s~~~~~ 778 (1749)
...++|+|+.+++|.| +||+...+|...+|+..|. +++..++.+.|..|.+++|--.|.
T Consensus 533 --------I~~~aWsP~n~~vATG---SlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da 594 (603)
T KOG0318|consen 533 --------INCVAWSPNNKLVATG---SLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDA 594 (603)
T ss_pred --------EEEEEeCCCceEEEec---cccceEEEEEccChhhheEeccccccCceeEEEecCceEEeccCcc
Confidence 2368999999999999 9999999999988875544 445668999999999999854443
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=327.64 Aligned_cols=292 Identities=22% Similarity=0.395 Sum_probs=264.9
Q ss_pred cceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEE
Q 000270 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1749)
Q Consensus 233 ~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVW 312 (1749)
++.-++|+||.+.|+++.|++|.++|+++|.||.+.|||.-|...++.+.-...+|..+||+|.|+++|+|+-|+...||
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIY 124 (343)
T ss_pred eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence 44568999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred ECCCC------ceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCC
Q 000270 313 RLPDG------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1749)
Q Consensus 313 Dl~tg------k~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~ 386 (1749)
++.+. ...+.+.+|++.+.++.|.+|+ .|++++.|.++.+||+++++.+..+
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~----~ilT~SGD~TCalWDie~g~~~~~f------------------ 182 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN----HILTGSGDMTCALWDIETGQQTQVF------------------ 182 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCCC----ceEecCCCceEEEEEcccceEEEEe------------------
Confidence 99854 3456789999999999999976 6999999999999999999877665
Q ss_pred CCCCCCCceEEEEEcC-CCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccC
Q 000270 387 SAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 465 (1749)
Q Consensus 387 s~~~h~~~Vt~LafSP-DG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~ 465 (1749)
.+|.+.|.+++++| +++.|++|+.|+..+|||++. ....+.|.+|...|++|.|.|+|
T Consensus 183 --~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~---------~~c~qtF~ghesDINsv~ffP~G---------- 241 (343)
T KOG0286|consen 183 --HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS---------GQCVQTFEGHESDINSVRFFPSG---------- 241 (343)
T ss_pred --cCCcccEEEEecCCCCCCeEEecccccceeeeeccC---------cceeEeecccccccceEEEccCC----------
Confidence 47999999999999 999999999999999999976 45788999999999999999998
Q ss_pred CCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeE
Q 000270 466 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNM 545 (1749)
Q Consensus 466 ~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~Vts 545 (1749)
.-|++|+.|++.++||++..+.+.... -.....+|++
T Consensus 242 ----------------~afatGSDD~tcRlyDlRaD~~~a~ys---------------------------~~~~~~gitS 278 (343)
T KOG0286|consen 242 ----------------DAFATGSDDATCRLYDLRADQELAVYS---------------------------HDSIICGITS 278 (343)
T ss_pred ----------------CeeeecCCCceeEEEeecCCcEEeeec---------------------------cCcccCCcee
Confidence 789999999999999999755322111 1123457999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 000270 546 IVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1749)
Q Consensus 546 VafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWD 611 (1749)
++||..|++|++|..|.++.|||.-.++.+..|.||...|++|..+| ++..|+||++|.+|+||.
T Consensus 279 v~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~-DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 279 VAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSP-DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECC-CCcEEEecchhHheeecC
Confidence 99999999999999999999999999999999999999999999999 889999999999999994
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=362.66 Aligned_cols=382 Identities=21% Similarity=0.316 Sum_probs=305.6
Q ss_pred hccccCCCccccccceEEEEcc-CCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCc
Q 000270 220 CYAIAKPSTMVQKMQNIKRVRG-HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA 298 (1749)
Q Consensus 220 ~~~~a~p~~~~~~~~~i~tL~G-H~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~ 298 (1749)
......-.|.+++.+.++.+++ |.++|.-++|+|.|..||+|+.||.|+|||+..+.+.+.|+||.+.|.++.|+|+-.
T Consensus 81 ~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~ 160 (775)
T KOG0319|consen 81 SRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWN 160 (775)
T ss_pred eccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccc
Confidence 3344445577788899999998 999999999999999999999999999999999999999999999999999999654
Q ss_pred --EEEEEeCCCeEEEEECCCCc-eEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecC----
Q 000270 299 --LVASASNDCIIRVWRLPDGL-PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIP---- 371 (1749)
Q Consensus 299 --lLASGS~DGtIrVWDl~tgk-~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~---- 371 (1749)
+|++|..|++|++||+.+.. ++.++..|.+.|++++|++|+. .+++++.|..|.|||+...+....+..-
T Consensus 161 ~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~---~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E 237 (775)
T KOG0319|consen 161 RWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSL---ELLSVGRDKVIIVWDLVQYKKLKTLPLYESLE 237 (775)
T ss_pred hhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCc---eEEEeccCcEEEEeehhhhhhhheechhhhee
Confidence 68999999999999998664 4788899999999999999975 6777777777777776443322221100
Q ss_pred ------C----------------------------------C-CCccc--------------------------------
Q 000270 372 ------R----------------------------------P-SDAVA-------------------------------- 378 (1749)
Q Consensus 372 ------~----------------------------------~-~~~~~-------------------------------- 378 (1749)
. + .....
T Consensus 238 ~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k 317 (775)
T KOG0319|consen 238 SVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVK 317 (775)
T ss_pred eEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEeh
Confidence 0 0 00000
Q ss_pred ---------------CCC-------------------CCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Q 000270 379 ---------------GRN-------------------MAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKP 424 (1749)
Q Consensus 379 ---------------g~~-------------------~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~ 424 (1749)
|.. ........+|...|.++....+|-+|++|+.|.+|++|.+...
T Consensus 318 ~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~ 397 (775)
T KOG0319|consen 318 QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNN 397 (775)
T ss_pred hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCC
Confidence 000 0000123567778888886667889999999999999988432
Q ss_pred CCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCC
Q 000270 425 NTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH 504 (1749)
Q Consensus 425 ~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~ 504 (1749)
. ....++....+|.+.|.+|+++..+ ..+|+++|.|+++++|++...+..
T Consensus 398 ~-----~~~~~~a~~~gH~~svgava~~~~~-------------------------asffvsvS~D~tlK~W~l~~s~~~ 447 (775)
T KOG0319|consen 398 C-----SKSLCVAQANGHTNSVGAVAGSKLG-------------------------ASFFVSVSQDCTLKLWDLPKSKET 447 (775)
T ss_pred c-----chhhhhhhhcccccccceeeecccC-------------------------ccEEEEecCCceEEEecCCCcccc
Confidence 1 1233456678999999999997654 369999999999999998752210
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCC
Q 000270 505 PKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTES 584 (1749)
Q Consensus 505 ~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~ 584 (1749)
. .+..-........|...|++++++|+.++||||+.|.+.+||++..+.++.+|.||+..
T Consensus 448 ~--------------------~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RG 507 (775)
T KOG0319|consen 448 A--------------------FPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRG 507 (775)
T ss_pred c--------------------ccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccc
Confidence 0 01112223345679999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeeecc--------CCCEEEEEcCCCeEEEEECCCCcccccc
Q 000270 585 TYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR--------DGASIILSDDVGQLYILNTGQGESQKDA 655 (1749)
Q Consensus 585 VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~~~s--------DG~~LAsgd~DG~I~IWdl~tGe~~k~~ 655 (1749)
|+++.|+| ..++|+|+|.|++|+||.+.+..|+++|.+|... +|.+|++++.||-|+||++.++++...+
T Consensus 508 vw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl 585 (775)
T KOG0319|consen 508 VWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL 585 (775)
T ss_pred eEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh
Confidence 99999999 7789999999999999999999999999987433 9999999999999999999999887544
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=335.43 Aligned_cols=320 Identities=23% Similarity=0.433 Sum_probs=274.0
Q ss_pred EEccCCCCEEEEEECCCCC-EEEEEeCCcEEEEEECCC--CeE--EEEEc------c----CCCCeEEEEEcCCCcEEEE
Q 000270 238 RVRGHRNAVYCAIFDRSGR-YVITGSDDRLVKIWSMET--AYC--LASCR------G----HEGDITDLAVSSNNALVAS 302 (1749)
Q Consensus 238 tL~GH~~~Vt~VaFSPDG~-~LATGS~DGtVrIWDl~T--g~~--l~tL~------g----Hs~~VtsLafSPDg~lLAS 302 (1749)
++..|...|++++|+|-.. .||+|+.|-+.++|++.. ..+ ...|+ + ....|++|+|+.+|.+||+
T Consensus 173 kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~Lat 252 (524)
T KOG0273|consen 173 KVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLAT 252 (524)
T ss_pred eeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEE
Confidence 4445999999999999766 899999999999999863 111 11111 1 2367999999999999999
Q ss_pred EeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCC
Q 000270 303 ASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 382 (1749)
Q Consensus 303 GS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~ 382 (1749)
|+.||.++||+. +|..+.+|..|.++|.++.|+..|. +|++++.||++.+||..++.....+.+
T Consensus 253 G~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~---yilS~~vD~ttilwd~~~g~~~q~f~~------------ 316 (524)
T KOG0273|consen 253 GSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGT---YILSGGVDGTTILWDAHTGTVKQQFEF------------ 316 (524)
T ss_pred eecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCC---EEEeccCCccEEEEeccCceEEEeeee------------
Confidence 999999999995 6888899999999999999999987 999999999999999998887766643
Q ss_pred CCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCccccccc
Q 000270 383 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSL 462 (1749)
Q Consensus 383 ~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~ 462 (1749)
|...-..+.|-.+ .-|++.+.||.|+|+.+.. ..++.++.+|.+.|.++.|.|.+
T Consensus 317 --------~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~---------~~P~~t~~GH~g~V~alk~n~tg------- 371 (524)
T KOG0273|consen 317 --------HSAPALDVDWQSN-DEFATSSTDGCIHVCKVGE---------DRPVKTFIGHHGEVNALKWNPTG------- 371 (524)
T ss_pred --------ccCCccceEEecC-ceEeecCCCceEEEEEecC---------CCcceeeecccCceEEEEECCCC-------
Confidence 3333456777654 4688999999999999843 45678899999999999999987
Q ss_pred ccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCC
Q 000270 463 ADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRG 542 (1749)
Q Consensus 463 ~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~ 542 (1749)
.+|++++.|++++||.+.. ......+.+|...
T Consensus 372 -------------------~LLaS~SdD~TlkiWs~~~-----------------------------~~~~~~l~~Hske 403 (524)
T KOG0273|consen 372 -------------------SLLASCSDDGTLKIWSMGQ-----------------------------SNSVHDLQAHSKE 403 (524)
T ss_pred -------------------ceEEEecCCCeeEeeecCC-----------------------------Ccchhhhhhhccc
Confidence 7999999999999998764 3445667889999
Q ss_pred eeEEEEcCCC---------CEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 000270 543 VNMIVWSLDN---------RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1749)
Q Consensus 543 VtsVafSPDG---------~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~ 613 (1749)
|..+.|+|.| ..|++++.|++|++||+..|.++++|..|..+|++|+|+| +++++++|+.||.|.||++.
T Consensus 404 i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 404 IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYLASGSLDGCVHIWSTK 482 (524)
T ss_pred eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEEEecCCCCeeEecccc
Confidence 9999999964 5799999999999999999999999999999999999999 88999999999999999999
Q ss_pred CCceEEEEeee-------eccCCCEEEEEcCCCeEEEEECC
Q 000270 614 EGIPIRIYEIS-------RFRDGASIILSDDVGQLYILNTG 647 (1749)
Q Consensus 614 tGk~l~tl~~~-------~~sDG~~LAsgd~DG~I~IWdl~ 647 (1749)
+++.++.+... +..+|..|..+-.||.+.+.|+.
T Consensus 483 ~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 483 TGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred chheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99999988753 23389999999999999999873
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=341.08 Aligned_cols=278 Identities=20% Similarity=0.296 Sum_probs=255.5
Q ss_pred cCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCC
Q 000270 283 GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 362 (1749)
Q Consensus 283 gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg 362 (1749)
|-+.+|..+.|+.|+..|||||.+|.++||+..+...+.+|.||...|.++.|+|.... ..||+|+.||++++|++.+.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~-~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSD-LNLATASADGTVKLWKLSQE 251 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCc-cceeeeccCCceeeeccCCC
Confidence 56788999999999999999999999999999999999999999999999999998422 37999999999999999887
Q ss_pred cccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCC
Q 000270 363 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 442 (1749)
Q Consensus 363 ~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH 442 (1749)
..+..+ .+|...|..++|+|+|++|++++.|.+-++||+.+ ...+....||
T Consensus 252 ~~l~~l--------------------~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~t---------k~ElL~QEGH 302 (459)
T KOG0272|consen 252 TPLQDL--------------------EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLET---------KSELLLQEGH 302 (459)
T ss_pred cchhhh--------------------hcchhhheeeeecCCCceeeecccccchhhccccc---------chhhHhhccc
Confidence 665554 46888999999999999999999999999999976 4456678899
Q ss_pred CCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCC
Q 000270 443 ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPP 522 (1749)
Q Consensus 443 ~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~ 522 (1749)
...|.+|+|.++| .++++|+.|..-+|||++++
T Consensus 303 s~~v~~iaf~~DG--------------------------SL~~tGGlD~~~RvWDlRtg--------------------- 335 (459)
T KOG0272|consen 303 SKGVFSIAFQPDG--------------------------SLAATGGLDSLGRVWDLRTG--------------------- 335 (459)
T ss_pred ccccceeEecCCC--------------------------ceeeccCccchhheeecccC---------------------
Confidence 9999999999998 79999999999999999974
Q ss_pred CCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEe
Q 000270 523 MPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAG 602 (1749)
Q Consensus 523 ~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs 602 (1749)
.++..+.+|...|..|+|+|+|-.||||+.|++++|||++.-..+.++.+|..-|+.|.|+|..+.+|+|++
T Consensus 336 --------r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 336 --------RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS 407 (459)
T ss_pred --------cEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcc
Confidence 456677889999999999999999999999999999999999999999999999999999998899999999
Q ss_pred CCCcEEEEeCCCCceEEEEeeee--------ccCCCEEEEEcCCCeEEEEE
Q 000270 603 YDGKTIVWDIWEGIPIRIYEISR--------FRDGASIILSDDVGQLYILN 645 (1749)
Q Consensus 603 ~DGtIrVWDl~tGk~l~tl~~~~--------~sDG~~LAsgd~DG~I~IWd 645 (1749)
.|++++||...++.+++++.+|. .+||..+++++.|.++++|.
T Consensus 408 yD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 408 YDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999999999999998763 33999999999999999995
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=338.87 Aligned_cols=377 Identities=19% Similarity=0.242 Sum_probs=299.9
Q ss_pred CccccccccccccccCcccccCCCcchhhhhccccCCCccccccceEEEEccCCCCEEEEEECCCCC--EEEEEeCCcEE
Q 000270 190 MYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGR--YVITGSDDRLV 267 (1749)
Q Consensus 190 ~~~~~V~~l~~r~~gg~~~~~~~~~~l~~~~~~~a~p~~~~~~~~~i~tL~GH~~~Vt~VaFSPDG~--~LATGS~DGtV 267 (1749)
.|...|-.+.+.+.|+. ++........+.|.+....+.+.|+||.+.|.++.|.|+-. .|++|..|++|
T Consensus 103 ~He~Pvi~ma~~~~g~L---------lAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v 173 (775)
T KOG0319|consen 103 IHEAPVITMAFDPTGTL---------LATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTV 173 (775)
T ss_pred ccCCCeEEEEEcCCCce---------EEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceE
Confidence 34555555555555532 23333455567789999999999999999999999999765 58899999999
Q ss_pred EEEECCCCe-EEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceE--------------------------
Q 000270 268 KIWSMETAY-CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI-------------------------- 320 (1749)
Q Consensus 268 rIWDl~Tg~-~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l-------------------------- 320 (1749)
++||+.+.. ++.++..|.+.|++|+|++|+..+++++.|..|.|||+.+.+.+
T Consensus 174 ~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~ 253 (775)
T KOG0319|consen 174 RVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYI 253 (775)
T ss_pred EEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEE
Confidence 999998654 48888999999999999999999999999999999987320000
Q ss_pred --------------------------------------------------------------------------------
Q 000270 321 -------------------------------------------------------------------------------- 320 (1749)
Q Consensus 321 -------------------------------------------------------------------------------- 320 (1749)
T Consensus 254 ~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG 333 (775)
T KOG0319|consen 254 ITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLG 333 (775)
T ss_pred EEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecC
Confidence
Q ss_pred -------------------------EEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCC
Q 000270 321 -------------------------SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSD 375 (1749)
Q Consensus 321 -------------------------~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~ 375 (1749)
..+.||+..|.++....+|. +|++|+.|.++++|.++.+.....
T Consensus 334 ~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~---llat~sKD~svilWr~~~~~~~~~-------- 402 (775)
T KOG0319|consen 334 PEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGD---LLATGSKDKSVILWRLNNNCSKSL-------- 402 (775)
T ss_pred CccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCc---EEEEecCCceEEEEEecCCcchhh--------
Confidence 12345666666666444443 889999999999998844432211
Q ss_pred cccCCCCCCCCCCCCCCCceEEEEEcCCC-CEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCC
Q 000270 376 AVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454 (1749)
Q Consensus 376 ~~~g~~~~~~~s~~~h~~~Vt~LafSPDG-~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpd 454 (1749)
......+|...|.+++++..+ .+|++++.|++|++|++...+............+...|...|++|+++|+
T Consensus 403 --------~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n 474 (775)
T KOG0319|consen 403 --------CVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN 474 (775)
T ss_pred --------hhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC
Confidence 122345789999999998765 58999999999999999752221111111122345789999999999998
Q ss_pred CcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcc
Q 000270 455 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ 534 (1749)
Q Consensus 455 g~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~ 534 (1749)
. .+|+|||.|.+++||++.. .....
T Consensus 475 d--------------------------kLiAT~SqDktaKiW~le~-----------------------------~~l~~ 499 (775)
T KOG0319|consen 475 D--------------------------KLIATGSQDKTAKIWDLEQ-----------------------------LRLLG 499 (775)
T ss_pred C--------------------------ceEEecccccceeeecccC-----------------------------ceEEE
Confidence 6 7999999999999999874 33456
Q ss_pred cccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 000270 535 RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1749)
Q Consensus 535 ~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~t 614 (1749)
.+.+|..+|.+|.|++..+.|||++.|++|+||.+.++.|+.+|.||+..|..+.|-. ++..|+|++.||.|+||++.+
T Consensus 500 vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~-~~~qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 500 VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR-NGKQLISAGADGLIKLWNIKT 578 (775)
T ss_pred EeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee-CCcEEEeccCCCcEEEEeccc
Confidence 7889999999999999999999999999999999999999999999999999999988 777888999999999999999
Q ss_pred CceEEEEeeee--------ccCCCEEEEEcCCCeEEEEECCCCc
Q 000270 615 GIPIRIYEISR--------FRDGASIILSDDVGQLYILNTGQGE 650 (1749)
Q Consensus 615 Gk~l~tl~~~~--------~sDG~~LAsgd~DG~I~IWdl~tGe 650 (1749)
+.|+.++..|. .+.+.++++|+.||.|.+|.-.+.+
T Consensus 579 ~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 579 NECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred hhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcHH
Confidence 99999998762 2377799999999999999875543
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-32 Score=327.25 Aligned_cols=487 Identities=19% Similarity=0.266 Sum_probs=350.3
Q ss_pred cccccceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeE--EEEEccCCCCeEEEEEcCCCcEEEEEeCC
Q 000270 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC--LASCRGHEGDITDLAVSSNNALVASASND 306 (1749)
Q Consensus 229 ~~~~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~--l~tL~gHs~~VtsLafSPDg~lLASGS~D 306 (1749)
.+..+...+++.||-..|+++.|+.|.++|++||.|.+++||.+...+. ...|.+|...|.++-|..+..-|.+.+.|
T Consensus 131 ~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskd 210 (893)
T KOG0291|consen 131 EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKD 210 (893)
T ss_pred ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecC
Confidence 4667888999999999999999999999999999999999999987665 56688999999999999999999999999
Q ss_pred CeEEEEECCC-----------------------Cce-----E------EEecCCCCceEEEEeccCCCcceEEEeecCCC
Q 000270 307 CIIRVWRLPD-----------------------GLP-----I------SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG 352 (1749)
Q Consensus 307 GtIrVWDl~t-----------------------gk~-----l------~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DG 352 (1749)
|.|.+|.... ++. . .-+......|++.+|++... .|++|-..|
T Consensus 211 G~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~---~lvvgFssG 287 (893)
T KOG0291|consen 211 GALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTN---LLVVGFSSG 287 (893)
T ss_pred ceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCce---EEEEEecCC
Confidence 9999997651 111 0 11223347899999999775 899999999
Q ss_pred cEEEEEcCCCcccceeecCCCCC-cc---------c-C-CC--------C---CCCCCCCCCCCceEEEEEcCCCCEEEE
Q 000270 353 TCRIWDARYSQFSPRIYIPRPSD-AV---------A-G-RN--------M---APSSSAGPQSHQIFCCAFNANGTVFVT 409 (1749)
Q Consensus 353 tIrIWDl~tg~~l~~l~~~~~~~-~~---------~-g-~~--------~---~~~~s~~~h~~~Vt~LafSPDG~~LaS 409 (1749)
...+|.+..-.++..+.+....- .. + | .. + .-....++|...++|++++|||+++|+
T Consensus 288 ~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaT 367 (893)
T KOG0291|consen 288 EFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIAT 367 (893)
T ss_pred eeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEe
Confidence 99999998877776665442211 10 0 0 00 0 012245678899999999999999999
Q ss_pred ecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeC
Q 000270 410 GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR 489 (1749)
Q Consensus 410 Gs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~ 489 (1749)
|+.||.|+|||..+ +.++.++..|+..|+.++|+..+ +.+++.+-
T Consensus 368 G~eDgKVKvWn~~S---------gfC~vTFteHts~Vt~v~f~~~g--------------------------~~llssSL 412 (893)
T KOG0291|consen 368 GAEDGKVKVWNTQS---------GFCFVTFTEHTSGVTAVQFTARG--------------------------NVLLSSSL 412 (893)
T ss_pred ccCCCcEEEEeccC---------ceEEEEeccCCCceEEEEEEecC--------------------------CEEEEeec
Confidence 99999999999954 67899999999999999999877 89999999
Q ss_pred CCcEEEEecCCCCCCcccccccccc--ccCCCCCC-------------CCCCCCCCCCcccccCCCCCeeEEEEcCCCCE
Q 000270 490 DGSAIIWIPRSRRSHPKAARWTQAY--HLKVPPPP-------------MPPQPPRGGPRQRILPTPRGVNMIVWSLDNRF 554 (1749)
Q Consensus 490 DGtIrIWDl~s~k~~~~~~~~~~~~--~l~v~~~~-------------~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~ 554 (1749)
||+|+.||+...+............ .+.+.+.. .......|..+..+.+|.++|.+++|+|+|..
T Consensus 413 DGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~ 492 (893)
T KOG0291|consen 413 DGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSL 492 (893)
T ss_pred CCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCe
Confidence 9999999998766543332211111 11111000 01133567778889999999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCc-eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEee------e---
Q 000270 555 VLAAIMDCRICVWNAADGS-LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEI------S--- 624 (1749)
Q Consensus 555 LATGs~DGtI~VWDl~tgk-lv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~------~--- 624 (1749)
||+|+.|.+|++||+-... .+.++. +...|.+++|+| +++-|+.+.-||.|.+||+..+..+.++.+ +
T Consensus 493 LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrP-dG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~ 570 (893)
T KOG0291|consen 493 LASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRP-DGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKE 570 (893)
T ss_pred EEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcC-CCCeEEEEEecceEEEEEhhhceeeccccchhhccccccc
Confidence 9999999999999986543 344443 566799999999 777888899999999999988777654432 1
Q ss_pred -------------------eccCCCEEEEEcCCCeEEEEECCCCcccccccceeeecCCCcceeE-----cCCCc--EEe
Q 000270 625 -------------------RFRDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQ-----DTYGN--VLD 678 (1749)
Q Consensus 625 -------------------~~sDG~~LAsgd~DG~I~IWdl~tGe~~k~~~~~~fFs~D~r~Lv~-----d~~G~--Vld 678 (1749)
...||..|++|+....|.||++.++-.++.......-+-|+-.... ...|+ .+|
T Consensus 571 ~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD 650 (893)
T KOG0291|consen 571 TDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLID 650 (893)
T ss_pred cceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccc
Confidence 1119999999999999999999999888776655433333321100 11111 122
Q ss_pred cccccCCCCCCCCCccccCCCCCCCCcchhhhhhh----cccccccccCCCCCceeecc-----CccCCcCcccCCccCc
Q 000270 679 QETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQR----RLGALGIEWRPSSLKLAVGP-----DFSLDQGYQLQPLADL 749 (1749)
Q Consensus 679 ~~tq~~Phl~~~~~ll~D~~g~P~p~~~Q~l~p~R----~l~~~~~a~sPdg~~lAvg~-----~~~ld~~~~~~p~~~~ 749 (1749)
.+......++. ++.|.......-.| .+...++.|||.|+.+|... -|+++..+..-|. ++
T Consensus 651 ~e~~~~e~~i~----------~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEGl~IYsld~~~~FDPf-~L 719 (893)
T KOG0291|consen 651 TEESDLEGRID----------IALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEGLLIYSLDTTILFDPF-DL 719 (893)
T ss_pred ccccccccccc----------ccCCccccCCccccccCceEEEEEEEECCCcCeeeeecccceEEEecCCceEEccc-cc
Confidence 11111111111 11111111111122 34466788999999999873 4666666655555 23
Q ss_pred ccccCCCcccccccccccC
Q 000270 750 DVMIDPLPEFIDVMDWEPE 768 (1749)
Q Consensus 750 ~~~i~~~~~~~~~~~w~pe 768 (1749)
| +...|+.+..+-|+.|
T Consensus 720 D--~~vTPe~v~~al~~qe 736 (893)
T KOG0291|consen 720 D--VDVTPESVREALREQE 736 (893)
T ss_pred c--cccCHHHHHHHHhcch
Confidence 3 5667777777777776
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=316.72 Aligned_cols=312 Identities=21% Similarity=0.343 Sum_probs=276.8
Q ss_pred ccccccceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCC
Q 000270 228 TMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDC 307 (1749)
Q Consensus 228 ~~~~~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DG 307 (1749)
..+....+.+.+.||+.+|+.+.|+|+-..+|+++.|++|++||..+|++...++||...|.+|+|+..|++||+++.|=
T Consensus 93 ~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl 172 (406)
T KOG0295|consen 93 LWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDL 172 (406)
T ss_pred hcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCcc
Confidence 34556677888999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eEEEEECCC-CceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCC
Q 000270 308 IIRVWRLPD-GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1749)
Q Consensus 308 tIrVWDl~t-gk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~ 386 (1749)
.|++||..+ .++++.+.+|...|.+++|.|.+. ++++++.|.+|+.|++.++-++.++
T Consensus 173 ~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd---~ilS~srD~tik~We~~tg~cv~t~------------------ 231 (406)
T KOG0295|consen 173 SAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGD---HILSCSRDNTIKAWECDTGYCVKTF------------------ 231 (406)
T ss_pred chhheeHHHHHHHHHHhcCcccceeeEEEEecCC---eeeecccccceeEEecccceeEEec------------------
Confidence 899999876 578888999999999999999987 9999999999999999999988776
Q ss_pred CCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCC
Q 000270 387 SAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSS 466 (1749)
Q Consensus 387 s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~ 466 (1749)
.+|...|..+..+.||.++|+++.|.+|++|-+.+ ..+...++.|+.+|.+++|.|....+.. ....
T Consensus 232 --~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t---------~~~k~~lR~hEh~vEci~wap~~~~~~i--~~at 298 (406)
T KOG0295|consen 232 --PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVAT---------KQCKAELREHEHPVECIAWAPESSYPSI--SEAT 298 (406)
T ss_pred --cCchHhEEEEEecCCeeEEEecCCCceEEEEEecc---------chhhhhhhccccceEEEEecccccCcch--hhcc
Confidence 35777999999999999999999999999999966 3456678999999999999997632211 1111
Q ss_pred CCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEE
Q 000270 467 KEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMI 546 (1749)
Q Consensus 467 ~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsV 546 (1749)
.. -..+.++++++.|++|++||+.++ .++.++.+|...|..+
T Consensus 299 ~~---------~~~~~~l~s~SrDktIk~wdv~tg-----------------------------~cL~tL~ghdnwVr~~ 340 (406)
T KOG0295|consen 299 GS---------TNGGQVLGSGSRDKTIKIWDVSTG-----------------------------MCLFTLVGHDNWVRGV 340 (406)
T ss_pred CC---------CCCccEEEeecccceEEEEeccCC-----------------------------eEEEEEecccceeeee
Confidence 10 013479999999999999999873 4567788999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 000270 547 VWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1749)
Q Consensus 547 afSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl 612 (1749)
+|+|.|+||+++..|++++|||+.++++..++..|..-|++++|+. +.-+++||+-|.++++|..
T Consensus 341 af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~-~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 341 AFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCC-CCceEEeccccceeeeeec
Confidence 9999999999999999999999999999999999999999999998 5558899999999999964
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-32 Score=297.14 Aligned_cols=293 Identities=23% Similarity=0.346 Sum_probs=248.2
Q ss_pred ccceEEEEccCCCCEEEEEECCC-CCEEEEEeCCcEEEEEECC-----CCeEEEEEccCCCCeEEEEEcCCCcEEEEEeC
Q 000270 232 KMQNIKRVRGHRNAVYCAIFDRS-GRYVITGSDDRLVKIWSME-----TAYCLASCRGHEGDITDLAVSSNNALVASASN 305 (1749)
Q Consensus 232 ~~~~i~tL~GH~~~Vt~VaFSPD-G~~LATGS~DGtVrIWDl~-----Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~ 305 (1749)
.+...-+|+||.+.|+.++..+. -..|++++.|.+|.+|++. .|..++.|.||...|..++.++||++.++++.
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw 83 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASW 83 (315)
T ss_pred hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccc
Confidence 34566789999999999999987 4688899999999999874 57889999999999999999999999999999
Q ss_pred CCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCC
Q 000270 306 DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS 385 (1749)
Q Consensus 306 DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~ 385 (1749)
|+++++||+.+|+..+.|.+|...|.+++|++|.. ++++|+.|.+|.+|++-... ..++.
T Consensus 84 D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~---qivSGSrDkTiklwnt~g~c-k~t~~---------------- 143 (315)
T KOG0279|consen 84 DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR---QIVSGSRDKTIKLWNTLGVC-KYTIH---------------- 143 (315)
T ss_pred cceEEEEEecCCcEEEEEEecCCceEEEEecCCCc---eeecCCCcceeeeeeecccE-EEEEe----------------
Confidence 99999999999999999999999999999999987 89999999999999986543 22221
Q ss_pred CCCCCCCCceEEEEEcCC--CCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccc
Q 000270 386 SSAGPQSHQIFCCAFNAN--GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLA 463 (1749)
Q Consensus 386 ~s~~~h~~~Vt~LafSPD--G~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~ 463 (1749)
...+...|.|+.|+|+ ..+|++++.|++|++||+++ .+....+.+|.+.++.++++|+|
T Consensus 144 --~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~---------~~l~~~~~gh~~~v~t~~vSpDG-------- 204 (315)
T KOG0279|consen 144 --EDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN---------CQLRTTFIGHSGYVNTVTVSPDG-------- 204 (315)
T ss_pred --cCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC---------cchhhccccccccEEEEEECCCC--------
Confidence 1223778999999998 67999999999999999975 34556788999999999999998
Q ss_pred cCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCe
Q 000270 464 DSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGV 543 (1749)
Q Consensus 464 ~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~V 543 (1749)
..+++|+.||.+.+||++.++.. ....+...|
T Consensus 205 ------------------slcasGgkdg~~~LwdL~~~k~l------------------------------ysl~a~~~v 236 (315)
T KOG0279|consen 205 ------------------SLCASGGKDGEAMLWDLNEGKNL------------------------------YSLEAFDIV 236 (315)
T ss_pred ------------------CEEecCCCCceEEEEEccCCcee------------------------------EeccCCCeE
Confidence 79999999999999999975521 223466789
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecC----C-----CCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 000270 544 NMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTG----H-----TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1749)
Q Consensus 544 tsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~g----H-----~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~ 613 (1749)
.+++|+|+.-+|+.+. +..|+|||+.++.++..+.. . .....+++|++ ++..|++|-.|+.|++|.+.
T Consensus 237 ~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~-dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 237 NSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA-DGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred eeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcC-CCcEEEeeecCCcEEEEEee
Confidence 9999999876666554 45699999999998876642 2 22346789999 77788889999999999874
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-31 Score=299.83 Aligned_cols=288 Identities=31% Similarity=0.554 Sum_probs=253.3
Q ss_pred EEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECC
Q 000270 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP 315 (1749)
Q Consensus 236 i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~ 315 (1749)
+++|++|.+.|++++|+|++++|++|+.||.|++|++.++.....+.+|...|..+.|++++++|++++.+|.|++|++.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 45688999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred CCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCce
Q 000270 316 DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395 (1749)
Q Consensus 316 tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~V 395 (1749)
+++.+..+..|...|.++.|++++. ++++++.+|.|.+||+.+++....+ ..|...|
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~--------------------~~~~~~i 138 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGR---ILSSSSRDKTIKVWDVETGKCLTTL--------------------RGHTDWV 138 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCC---EEEEecCCCeEEEEECCCcEEEEEe--------------------ccCCCcE
Confidence 9888889999999999999999865 7788888999999999876654443 2356679
Q ss_pred EEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCccc
Q 000270 396 FCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475 (1749)
Q Consensus 396 t~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~ 475 (1749)
.+++|+|++.++++++.+|.|++||+.+ ...+..+..|...|.++.|++++
T Consensus 139 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~---------~~~~~~~~~~~~~i~~~~~~~~~-------------------- 189 (289)
T cd00200 139 NSVAFSPDGTFVASSSQDGTIKLWDLRT---------GKCVATLTGHTGEVNSVAFSPDG-------------------- 189 (289)
T ss_pred EEEEEcCcCCEEEEEcCCCcEEEEEccc---------cccceeEecCccccceEEECCCc--------------------
Confidence 9999999999999888899999999964 33455667888899999999986
Q ss_pred ccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEE
Q 000270 476 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFV 555 (1749)
Q Consensus 476 ~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~L 555 (1749)
..|++++.+|.|++||+.+++ ....+..+...|.+++|++++.++
T Consensus 190 ------~~l~~~~~~~~i~i~d~~~~~-----------------------------~~~~~~~~~~~i~~~~~~~~~~~~ 234 (289)
T cd00200 190 ------EKLLSSSSDGTIKLWDLSTGK-----------------------------CLGTLRGHENGVNSVAFSPDGYLL 234 (289)
T ss_pred ------CEEEEecCCCcEEEEECCCCc-----------------------------eecchhhcCCceEEEEEcCCCcEE
Confidence 688899999999999987532 122233566689999999999999
Q ss_pred EEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 000270 556 LAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1749)
Q Consensus 556 ATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWD 611 (1749)
++++.||.|++||+.+++.+..+.+|...|.+++|+| ++.+|++++.||.|++|+
T Consensus 235 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 235 ASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECC-CCCEEEEecCCCeEEecC
Confidence 9988899999999999999999999999999999999 677889999999999996
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-32 Score=299.04 Aligned_cols=292 Identities=23% Similarity=0.398 Sum_probs=254.3
Q ss_pred eEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECC-CCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEE
Q 000270 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME-TAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1749)
Q Consensus 235 ~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~-Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWD 313 (1749)
.+..+.||.+.|+++.|+|+|.+||||+.|..|.+|++. ..+....+++|.+.|..+.|.+|+..|++++.|.+|+.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 445688999999999999999999999999999999964 4566778899999999999999999999999999999999
Q ss_pred CCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCC
Q 000270 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1749)
Q Consensus 314 l~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~ 393 (1749)
+++|+++..+++|...|+.+. |...+..++.+++.||++++||++....+.++. ...
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~---------------------~ky 175 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLD--PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE---------------------NKY 175 (338)
T ss_pred cccceeeehhccccceeeecC--ccccCCeEEEecCCCceEEEEeecccchhhccc---------------------cce
Confidence 999999999999999999998 444445688999999999999999877666542 345
Q ss_pred ceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCc
Q 000270 394 QIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1749)
Q Consensus 394 ~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~ 473 (1749)
++++++|...+..+.+|+-|+.|++||++. .....++.||.+.|+.+..++.+
T Consensus 176 qltAv~f~d~s~qv~sggIdn~ikvWd~r~---------~d~~~~lsGh~DtIt~lsls~~g------------------ 228 (338)
T KOG0265|consen 176 QLTAVGFKDTSDQVISGGIDNDIKVWDLRK---------NDGLYTLSGHADTITGLSLSRYG------------------ 228 (338)
T ss_pred eEEEEEecccccceeeccccCceeeecccc---------CcceEEeecccCceeeEEeccCC------------------
Confidence 699999999999999999999999999975 45688999999999999999988
Q ss_pred ccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCC----CeeEEEEc
Q 000270 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR----GVNMIVWS 549 (1749)
Q Consensus 474 ~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~----~VtsVafS 549 (1749)
.++.+-+.|.++++||++-.. +...++..+.++.. ....++||
T Consensus 229 --------s~llsnsMd~tvrvwd~rp~~-------------------------p~~R~v~if~g~~hnfeknlL~csws 275 (338)
T KOG0265|consen 229 --------SFLLSNSMDNTVRVWDVRPFA-------------------------PSQRCVKIFQGHIHNFEKNLLKCSWS 275 (338)
T ss_pred --------CccccccccceEEEEEecccC-------------------------CCCceEEEeecchhhhhhhcceeecc
Confidence 789999999999999988421 11222344444432 35678999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 000270 550 LDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVW 610 (1749)
Q Consensus 550 PDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVW 610 (1749)
|+++.+.+|+.|..+++||.....++..+.||.+.|..++|+| ...+|.+++.|.+|++=
T Consensus 276 p~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp-~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 276 PNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP-TEPIILSCSSDKTIYLG 335 (338)
T ss_pred CCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC-CCcEEEEeccCceeEee
Confidence 9999999999999999999999899999999999999999999 56688899999999873
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=305.85 Aligned_cols=385 Identities=15% Similarity=0.224 Sum_probs=289.4
Q ss_pred cccceEEEEccCCCCEEEEEECCCCC-EEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeE
Q 000270 231 QKMQNIKRVRGHRNAVYCAIFDRSGR-YVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCII 309 (1749)
Q Consensus 231 ~~~~~i~tL~GH~~~Vt~VaFSPDG~-~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtI 309 (1749)
.++..+-.+.||...|+++.|-|.-. +++||++|++|.+|.-...+...+++.|..-|.|+.|+|||.++|+++.||+|
T Consensus 135 DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki 214 (603)
T KOG0318|consen 135 DSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKI 214 (603)
T ss_pred cCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccE
Confidence 34556677899999999999998764 69999999999999988778888899999999999999999999999999999
Q ss_pred EEEECCCCceEEEec---CCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcc---------
Q 000270 310 RVWRLPDGLPISVLR---GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAV--------- 377 (1749)
Q Consensus 310 rVWDl~tgk~l~tL~---gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~--------- 377 (1749)
.|||-.+|+.+..|. +|.+.|.+|+|+||+. .|++++.|.+++|||+.+..++.++.+.......
T Consensus 215 ~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~---~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd 291 (603)
T KOG0318|consen 215 YIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST---QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKD 291 (603)
T ss_pred EEEcCCCccEEEEecCCCCccccEEEEEECCCCc---eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCC
Confidence 999999999999998 8999999999999998 8999999999999999999988887665431110
Q ss_pred --------------cCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCC--CCCcceeeecC
Q 000270 378 --------------AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD--QPNHEIDVLSG 441 (1749)
Q Consensus 378 --------------~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~--~~~~~i~~l~g 441 (1749)
......+.....+|...|++++.++++.+|++|+.||.|.-|+..++...... .....+..+..
T Consensus 292 ~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~ 371 (603)
T KOG0318|consen 292 HLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAA 371 (603)
T ss_pred eEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEee
Confidence 01112244566789999999999999999999999999999999776543211 01112222222
Q ss_pred CC-CCeEEEEE-------------------------------cCCCccccccc------cc-C-----CCCCCCCccccc
Q 000270 442 HE-NDVNYVQF-------------------------------SGCAVASRFSL------AD-S-----SKEDSTPKFKNS 477 (1749)
Q Consensus 442 H~-~~V~sVaf-------------------------------Spdg~as~~s~------~~-~-----~~~~~~~~~~~s 477 (1749)
+. +.+..+.| .+++......+ .. . ............
T Consensus 372 ~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv 451 (603)
T KOG0318|consen 372 SESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAV 451 (603)
T ss_pred cCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEE
Confidence 22 22222221 11110000000 00 0 000000111112
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEE
Q 000270 478 WFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 557 (1749)
Q Consensus 478 ~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LAT 557 (1749)
-..++.++.|+.||.|+||.+..... .....+..|...|++++||||+.|||+
T Consensus 452 ~~~~~~vaVGG~Dgkvhvysl~g~~l---------------------------~ee~~~~~h~a~iT~vaySpd~~yla~ 504 (603)
T KOG0318|consen 452 SPDGSEVAVGGQDGKVHVYSLSGDEL---------------------------KEEAKLLEHRAAITDVAYSPDGAYLAA 504 (603)
T ss_pred cCCCCEEEEecccceEEEEEecCCcc---------------------------cceeeeecccCCceEEEECCCCcEEEE
Confidence 24567889999999999998775321 122345678899999999999999999
Q ss_pred EeCCCeEEEEECCCCceEE-EecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeee--------ccC
Q 000270 558 AIMDCRICVWNAADGSLVH-SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISR--------FRD 628 (1749)
Q Consensus 558 Gs~DGtI~VWDl~tgklv~-tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~~--------~sD 628 (1749)
|...+.|.+||+.+.+... .+.-|+..|.+|+|+| ++.++|||+.|-.|.||++......-.+..++ +-|
T Consensus 505 ~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP-~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wld 583 (603)
T KOG0318|consen 505 GDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSP-NNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLD 583 (603)
T ss_pred eccCCcEEEEEcccCceecceeeeeeeeEEEEEeCC-CceEEEeccccceEEEEEccChhhheEeccccccCceeEEEec
Confidence 9999999999999888744 3445999999999999 88899999999999999998755443333322 128
Q ss_pred CCEEEEEcCCCeEEEEEC
Q 000270 629 GASIILSDDVGQLYILNT 646 (1749)
Q Consensus 629 G~~LAsgd~DG~I~IWdl 646 (1749)
...|++++.|..|++|.+
T Consensus 584 e~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 584 ESTVVSSGQDANIKVWNV 601 (603)
T ss_pred CceEEeccCcceeEEecc
Confidence 899999999999999986
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-31 Score=286.60 Aligned_cols=287 Identities=18% Similarity=0.375 Sum_probs=248.6
Q ss_pred CEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCc--eEEEecCCCCceEEE
Q 000270 256 RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL--PISVLRGHTAAVTAI 333 (1749)
Q Consensus 256 ~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk--~l~tL~gHs~~VtsI 333 (1749)
-+|||+|.|.+|++|...+|.+.++++...+.|..|.+.|+++.||+++.- .||+||+.++. ++.++.+|+..|++|
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEE
Confidence 479999999999999999999999999888999999999999999998865 79999999874 689999999999999
Q ss_pred EeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCC
Q 000270 334 AFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD 413 (1749)
Q Consensus 334 aFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~D 413 (1749)
.|.-+|. .+++|++||+++|||++...+...+ .+...|+++..+|+..-|++|..+
T Consensus 90 gF~~dgr---WMyTgseDgt~kIWdlR~~~~qR~~---------------------~~~spVn~vvlhpnQteLis~dqs 145 (311)
T KOG0315|consen 90 GFQCDGR---WMYTGSEDGTVKIWDLRSLSCQRNY---------------------QHNSPVNTVVLHPNQTELISGDQS 145 (311)
T ss_pred EEeecCe---EEEecCCCceEEEEeccCcccchhc---------------------cCCCCcceEEecCCcceEEeecCC
Confidence 9999997 9999999999999999985544333 355789999999999999999999
Q ss_pred CcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcE
Q 000270 414 TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSA 493 (1749)
Q Consensus 414 GtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtI 493 (1749)
|.|+|||+....... .........|.++...++| .+++.+...|..
T Consensus 146 g~irvWDl~~~~c~~--------~liPe~~~~i~sl~v~~dg--------------------------sml~a~nnkG~c 191 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTH--------ELIPEDDTSIQSLTVMPDG--------------------------SMLAAANNKGNC 191 (311)
T ss_pred CcEEEEEccCCcccc--------ccCCCCCcceeeEEEcCCC--------------------------cEEEEecCCccE
Confidence 999999996532211 1122334678899999988 799999999999
Q ss_pred EEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC-
Q 000270 494 IIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG- 572 (1749)
Q Consensus 494 rIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tg- 572 (1749)
++|++-+... .....++..+..|.+-|..+.+|||+++||+++.|.+++||++.+.
T Consensus 192 yvW~l~~~~~-----------------------~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 192 YVWRLLNHQT-----------------------ASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred EEEEccCCCc-----------------------cccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence 9999875321 1123456678889999999999999999999999999999999888
Q ss_pred ceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeee
Q 000270 573 SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISR 625 (1749)
Q Consensus 573 klv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~~ 625 (1749)
+.-..+.+|...++..+||. ++.+|+||+.|+.+++|++..|+.++.+.+++
T Consensus 249 kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~ 300 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQYQGHH 300 (311)
T ss_pred eeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccCceeeecCCcc
Confidence 66678899999999999999 88999999999999999999999999988654
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-31 Score=317.99 Aligned_cols=313 Identities=24% Similarity=0.398 Sum_probs=273.8
Q ss_pred CCCccccccceEEEEccCCCCEEEEEECCCCCEEEEEeCC-cEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEE
Q 000270 225 KPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDD-RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASA 303 (1749)
Q Consensus 225 ~p~~~~~~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~D-GtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASG 303 (1749)
.....+..+.+++.|.--...|..++|+..|.+||.|+.. |.+-||++.+...+...++|...|++++++|||++||+|
T Consensus 289 f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG 368 (893)
T KOG0291|consen 289 FGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATG 368 (893)
T ss_pred eEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEec
Confidence 3345667788999999889999999999999999998764 899999999999999999999999999999999999999
Q ss_pred eCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCC
Q 000270 304 SNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMA 383 (1749)
Q Consensus 304 S~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~ 383 (1749)
+.||.|+|||..+|-|+.++..|+..|+++.|+..+. .|++++-||+|+.||+...+...++..|.
T Consensus 369 ~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~---~llssSLDGtVRAwDlkRYrNfRTft~P~----------- 434 (893)
T KOG0291|consen 369 AEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGN---VLLSSSLDGTVRAWDLKRYRNFRTFTSPE----------- 434 (893)
T ss_pred cCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCC---EEEEeecCCeEEeeeecccceeeeecCCC-----------
Confidence 9999999999999999999999999999999999987 89999999999999999888877776443
Q ss_pred CCCCCCCCCCceEEEEEcCCCCEEEEecCCCc-EEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCccccccc
Q 000270 384 PSSSAGPQSHQIFCCAFNANGTVFVTGSSDTL-ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSL 462 (1749)
Q Consensus 384 ~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGt-VrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~ 462 (1749)
..+..|++..|.|.++++|+.|.. |.||++.+ ++.+..+.||+++|.+++|+|.+
T Consensus 435 --------p~QfscvavD~sGelV~AG~~d~F~IfvWS~qT---------GqllDiLsGHEgPVs~l~f~~~~------- 490 (893)
T KOG0291|consen 435 --------PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT---------GQLLDILSGHEGPVSGLSFSPDG------- 490 (893)
T ss_pred --------ceeeeEEEEcCCCCEEEeeccceEEEEEEEeec---------CeeeehhcCCCCcceeeEEcccc-------
Confidence 345789999999999999998875 99999965 66789999999999999999987
Q ss_pred ccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCC
Q 000270 463 ADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRG 542 (1749)
Q Consensus 463 ~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~ 542 (1749)
+.|+++|-|.+|++||+-... .......+...
T Consensus 491 -------------------~~LaS~SWDkTVRiW~if~s~-----------------------------~~vEtl~i~sd 522 (893)
T KOG0291|consen 491 -------------------SLLASGSWDKTVRIWDIFSSS-----------------------------GTVETLEIRSD 522 (893)
T ss_pred -------------------CeEEeccccceEEEEEeeccC-----------------------------ceeeeEeeccc
Confidence 799999999999999986421 01122335567
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecC--------------------CCCCeEEEEEcCCCCcEEEEEe
Q 000270 543 VNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTG--------------------HTESTYVLDVHPFNPRIAMSAG 602 (1749)
Q Consensus 543 VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~g--------------------H~~~VtsLafSPdd~rlLaSgs 602 (1749)
+..++|+|||+-||+++-||.|.+||...+..+..+.| .....+.|++++ |+.++++||
T Consensus 523 vl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa-DG~~IlAgG 601 (893)
T KOG0291|consen 523 VLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSA-DGKCILAGG 601 (893)
T ss_pred eeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcC-CCCEEEecC
Confidence 99999999999999999999999999987766544332 134689999999 777888999
Q ss_pred CCCcEEEEeCCCCceEEEEeee
Q 000270 603 YDGKTIVWDIWEGIPIRIYEIS 624 (1749)
Q Consensus 603 ~DGtIrVWDl~tGk~l~tl~~~ 624 (1749)
....|+||++.++-+++.|...
T Consensus 602 ~sn~iCiY~v~~~vllkkfqiS 623 (893)
T KOG0291|consen 602 ESNSICIYDVPEGVLLKKFQIS 623 (893)
T ss_pred CcccEEEEECchhheeeeEEec
Confidence 9999999999999999999864
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-31 Score=302.32 Aligned_cols=409 Identities=19% Similarity=0.312 Sum_probs=302.3
Q ss_pred chhhHHHHHHH-----HhccCCCchhHHHHHHHHHHhccCchhHHHHHHhcCCCCCCCC-----C----ccccchhhHHH
Q 000270 48 DLREVYFLIMH-----FLSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDEN-----D----DGMSFPLSYNK 113 (1749)
Q Consensus 48 ~~~El~FLI~h-----FL~~gp~~~ta~~L~~El~e~~fL~kr~d~WlEal~l~~~~~~-----~----~g~~~~~~l~e 113 (1749)
.-.|..||+.+ ||-.|.-..+..+|++++.-..+-.++|+.- |.+|+..+.- . -+..+-..+++
T Consensus 82 ~~~ea~fLv~kQ~fLEf~k~~~is~al~~l~~~~~~lr~~~kk~~el--~~sll~sn~~~~ne~~~~~~~~n~R~~ll~e 159 (519)
T KOG0293|consen 82 NRKEAMFLVNKQIFLEFLKTGSISHALPVLRNPVLYLRKNKKKFHEL--ASSLLVSNDQFSNEENTTAQLNNERDKLLDE 159 (519)
T ss_pred hhHHHHHHHHHHHHHHHHhhccHhhhhHhhhcchhhhhhhHHHHHHH--HHHHhccccccccccchhhhhchhHHHHHHH
Confidence 45688899876 7778887788888888877766666776532 3444433321 1 12334445566
Q ss_pred HhhhCCC---CChHHHHHHHHHHHHccCCCCccccCCCCCCCccccccccCCcccccccCCCCCCCCCCCCCCCCCCCCC
Q 000270 114 LVERYPH---IEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEIDHPPAHMRWPHM 190 (1749)
Q Consensus 114 L~k~~~~---i~~~~Ll~ll~r~l~~~~~~~~~~~~~~~P~~~~vsaLl~~g~~Sll~s~~~~~~~~~~~p~~~~r~p~~ 190 (1749)
|.+..|. ++..+|..+++|.+-..... ..|=.+ + ..+|++..+.
T Consensus 160 lskyi~p~illP~rRLehLl~qAv~~Q~d~-----------cvyhns-l--dsvsll~Dh~------------------- 206 (519)
T KOG0293|consen 160 LSKYIPPNILLPKRRLEHLLEQAVKYQRDS-----------CVYHNS-L--DSVSLLSDHF------------------- 206 (519)
T ss_pred HHhhCCHhhcCChHHHHHHHHHHHHHHHhH-----------hHHhcc-c--chhhhhhhcc-------------------
Confidence 6665443 66677888887774411100 000000 1 0134433321
Q ss_pred ccccccccccccccCcccccCCCcchhhhhccccCCCccccccceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEE
Q 000270 191 YADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIW 270 (1749)
Q Consensus 191 ~~~~V~~l~~r~~gg~~~~~~~~~~l~~~~~~~a~p~~~~~~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIW 270 (1749)
|..... +.+..+.|..|.+.|.-+.||++|+||||++.|.+..||
T Consensus 207 -----------------------------c~~~qi------p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw 251 (519)
T KOG0293|consen 207 -----------------------------CGRLQI------PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIW 251 (519)
T ss_pred -----------------------------cCcccC------CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEE
Confidence 000000 123456788999999999999999999999999999999
Q ss_pred ECCCC---eEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEec-CCCCceEEEEeccCCCcceEEE
Q 000270 271 SMETA---YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLL 346 (1749)
Q Consensus 271 Dl~Tg---~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~-gHs~~VtsIaFSPdg~~~~~La 346 (1749)
.+... ++.+++.+|..+|..+.||||.++|++++.|..+.+||+.+|.+...+. +|...+.+++|.||+. .++
T Consensus 252 ~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~---~~V 328 (519)
T KOG0293|consen 252 IVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF---RFV 328 (519)
T ss_pred EEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCc---eeE
Confidence 88543 4578899999999999999999999999999999999999998877664 3568899999999997 799
Q ss_pred eecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCC
Q 000270 347 SSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNT 426 (1749)
Q Consensus 347 SgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~ 426 (1749)
+|+.|++|..||++... ..... .-....|.+++..+||+++++.+.|..|++|+..+..
T Consensus 329 ~Gs~dr~i~~wdlDgn~-~~~W~-------------------gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~- 387 (519)
T KOG0293|consen 329 TGSPDRTIIMWDLDGNI-LGNWE-------------------GVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV- 387 (519)
T ss_pred ecCCCCcEEEecCCcch-hhccc-------------------ccccceeEEEEEcCCCcEEEEEecccceeeechhhhh-
Confidence 99999999999987543 11110 1122459999999999999999999999999985421
Q ss_pred CCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCcc
Q 000270 427 DDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPK 506 (1749)
Q Consensus 427 ~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~ 506 (1749)
. ..+..-..+|++++.+.++ .++++.-.+..+.+||+...+
T Consensus 388 --------d-r~lise~~~its~~iS~d~--------------------------k~~LvnL~~qei~LWDl~e~~---- 428 (519)
T KOG0293|consen 388 --------D-RGLISEEQPITSFSISKDG--------------------------KLALVNLQDQEIHLWDLEENK---- 428 (519)
T ss_pred --------h-hccccccCceeEEEEcCCC--------------------------cEEEEEcccCeeEEeecchhh----
Confidence 1 1133445689999999887 788888899999999998533
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCcccccCCCCC--eeEEEEcC-CCCEEEEEeCCCeEEEEECCCCceEEEecCCCC
Q 000270 507 AARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRG--VNMIVWSL-DNRFVLAAIMDCRICVWNAADGSLVHSLTGHTE 583 (1749)
Q Consensus 507 ~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~--VtsVafSP-DG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~ 583 (1749)
.+..+.+|..+ |-.-||.. +..+||+|+.|+.|+||+..+|+++.++.||..
T Consensus 429 -------------------------lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~ 483 (519)
T KOG0293|consen 429 -------------------------LVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK 483 (519)
T ss_pred -------------------------HHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc
Confidence 22334444433 33445543 558999999999999999999999999999999
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 000270 584 STYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1749)
Q Consensus 584 ~VtsLafSPdd~rlLaSgs~DGtIrVWDl~t 614 (1749)
.|++|+|+|.++.++||||+||+|+||....
T Consensus 484 ~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 484 TVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred eeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 9999999999999999999999999998753
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-30 Score=286.42 Aligned_cols=283 Identities=23% Similarity=0.347 Sum_probs=241.7
Q ss_pred eEEEEEccCCCCeEEEEEcCC-CcEEEEEeCCCeEEEEECC-----CCceEEEecCCCCceEEEEeccCCCcceEEEeec
Q 000270 276 YCLASCRGHEGDITDLAVSSN-NALVASASNDCIIRVWRLP-----DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS 349 (1749)
Q Consensus 276 ~~l~tL~gHs~~VtsLafSPD-g~lLASGS~DGtIrVWDl~-----tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS 349 (1749)
.+..++.+|.+.|+.++..+. ...|++++.|.+|.+|++. .|.+++.+.||...|..++.++|++ +.++++
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~---~alS~s 82 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN---FALSAS 82 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc---eEEecc
Confidence 455678999999999999985 6689999999999999874 4678899999999999999999998 999999
Q ss_pred CCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCC
Q 000270 350 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDS 429 (1749)
Q Consensus 350 ~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s 429 (1749)
.|+++++||+.+++....+ .+|...|.+++|++|.+.|++|+.|.+|++|++..
T Consensus 83 wD~~lrlWDl~~g~~t~~f--------------------~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g------ 136 (315)
T KOG0279|consen 83 WDGTLRLWDLATGESTRRF--------------------VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG------ 136 (315)
T ss_pred ccceEEEEEecCCcEEEEE--------------------EecCCceEEEEecCCCceeecCCCcceeeeeeecc------
Confidence 9999999999999766655 46888999999999999999999999999999853
Q ss_pred CCCCcceeeecCC--CCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccc
Q 000270 430 DQPNHEIDVLSGH--ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKA 507 (1749)
Q Consensus 430 ~~~~~~i~~l~gH--~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~ 507 (1749)
.+..++..+ .+.|.|+.|+|... ..+|++++.|++|++||+++.+
T Consensus 137 ----~ck~t~~~~~~~~WVscvrfsP~~~------------------------~p~Ivs~s~DktvKvWnl~~~~----- 183 (315)
T KOG0279|consen 137 ----VCKYTIHEDSHREWVSCVRFSPNES------------------------NPIIVSASWDKTVKVWNLRNCQ----- 183 (315)
T ss_pred ----cEEEEEecCCCcCcEEEEEEcCCCC------------------------CcEEEEccCCceEEEEccCCcc-----
Confidence 333444333 78999999999741 2589999999999999998633
Q ss_pred cccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEE
Q 000270 508 ARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYV 587 (1749)
Q Consensus 508 ~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~Vts 587 (1749)
....+.+|...++.+++||||..+++|+.||.+.+||+..++.+..+. |...|.+
T Consensus 184 ------------------------l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~s 238 (315)
T KOG0279|consen 184 ------------------------LRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNS 238 (315)
T ss_pred ------------------------hhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEee
Confidence 334567899999999999999999999999999999999999988775 7788999
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEee-----------------eeccCCCEEEEEcCCCeEEEEECC
Q 000270 588 LDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEI-----------------SRFRDGASIILSDDVGQLYILNTG 647 (1749)
Q Consensus 588 LafSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~-----------------~~~sDG~~LAsgd~DG~I~IWdl~ 647 (1749)
++|+| +. +.+++..+-.|+|||+.++.++..+.. .++.||..|.+|..|+.|.+|.+.
T Consensus 239 l~fsp-nr-ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 239 LCFSP-NR-YWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEecC-Cc-eeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 99999 44 444566677799999999888766542 244599999999999999999874
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.5e-32 Score=315.27 Aligned_cols=297 Identities=22% Similarity=0.370 Sum_probs=256.0
Q ss_pred ccceEEEEccCCCCEEEEEECC-CCCEEEEEeCCcEEEEEECCC-CeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeE
Q 000270 232 KMQNIKRVRGHRNAVYCAIFDR-SGRYVITGSDDRLVKIWSMET-AYCLASCRGHEGDITDLAVSSNNALVASASNDCII 309 (1749)
Q Consensus 232 ~~~~i~tL~GH~~~Vt~VaFSP-DG~~LATGS~DGtVrIWDl~T-g~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtI 309 (1749)
.-+.++++.||+..|+++.|.| .+.+|++|+.|+.|+||++-. +.++++|.||..+|.+++|+.+|..++|+|.|+.|
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL 282 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence 4567899999999999999999 899999999999999999966 89999999999999999999999999999999999
Q ss_pred EEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCC
Q 000270 310 RVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389 (1749)
Q Consensus 310 rVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~ 389 (1749)
++||+++|+++..+. ....++|+.|.|++. +.|++|+.|+.|+.||+++++.+..+ .
T Consensus 283 KlwDtETG~~~~~f~-~~~~~~cvkf~pd~~--n~fl~G~sd~ki~~wDiRs~kvvqeY--------------------d 339 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFH-LDKVPTCVKFHPDNQ--NIFLVGGSDKKIRQWDIRSGKVVQEY--------------------D 339 (503)
T ss_pred eeeccccceEEEEEe-cCCCceeeecCCCCC--cEEEEecCCCcEEEEeccchHHHHHH--------------------H
Confidence 999999999999886 456789999999983 48999999999999999999977665 4
Q ss_pred CCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCC
Q 000270 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469 (1749)
Q Consensus 390 ~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~ 469 (1749)
.|-+.|..+.|-++|..+++.+.|++++||+...+. +.+.+ ...+.....+|..+|.+
T Consensus 340 ~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v------~ik~i--~~~~~hsmP~~~~~P~~-------------- 397 (503)
T KOG0282|consen 340 RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPV------PIKNI--ADPEMHTMPCLTLHPNG-------------- 397 (503)
T ss_pred hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCc------cchhh--cchhhccCcceecCCCC--------------
Confidence 577889999999999999999999999999996532 12222 22233445677788876
Q ss_pred CCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCC--CCeeEEE
Q 000270 470 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP--RGVNMIV 547 (1749)
Q Consensus 470 ~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~--~~VtsVa 547 (1749)
.++++-+.|..|.++.+...- ......++.+|. +--..+.
T Consensus 398 ------------~~~~aQs~dN~i~ifs~~~~~--------------------------r~nkkK~feGh~vaGys~~v~ 439 (503)
T KOG0282|consen 398 ------------KWFAAQSMDNYIAIFSTVPPF--------------------------RLNKKKRFEGHSVAGYSCQVD 439 (503)
T ss_pred ------------CeehhhccCceEEEEeccccc--------------------------ccCHhhhhcceeccCceeeEE
Confidence 789999999999999755211 122334455554 3356799
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 000270 548 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1749)
Q Consensus 548 fSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWD 611 (1749)
|||||++|++|..||.+.+||..+-+++..+.+|.+.+..+.|||.....|||||.||.|++|+
T Consensus 440 fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 440 FSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999999999999999999999999999999998889999999999999996
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=323.74 Aligned_cols=294 Identities=31% Similarity=0.516 Sum_probs=256.1
Q ss_pred ceEEEEccC-CCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCe--EEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEE
Q 000270 234 QNIKRVRGH-RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY--CLASCRGHEGDITDLAVSSNNALVASASNDCIIR 310 (1749)
Q Consensus 234 ~~i~tL~GH-~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~--~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIr 310 (1749)
.....+.+| ...|+|+.|+++|++|++++.|+.|++|++.++. .+..+.+|...|.+++|+|++++|++++.|++|+
T Consensus 149 ~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tir 228 (456)
T KOG0266|consen 149 SLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLR 228 (456)
T ss_pred eeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEE
Confidence 346667666 7899999999999999999999999999998888 7888899999999999999999999999999999
Q ss_pred EEEC-CCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCC
Q 000270 311 VWRL-PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389 (1749)
Q Consensus 311 VWDl-~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~ 389 (1749)
|||+ ..+..+.++.+|...|++++|+|+++ .+++|+.|++|+|||++++++...+ .
T Consensus 229 iwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~---~i~Sgs~D~tvriWd~~~~~~~~~l--------------------~ 285 (456)
T KOG0266|consen 229 IWDLKDDGRNLKTLKGHSTYVTSVAFSPDGN---LLVSGSDDGTVRIWDVRTGECVRKL--------------------K 285 (456)
T ss_pred EeeccCCCeEEEEecCCCCceEEEEecCCCC---EEEEecCCCcEEEEeccCCeEEEee--------------------e
Confidence 9999 55689999999999999999999986 8999999999999999998877766 4
Q ss_pred CCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCC--eEEEEEcCCCcccccccccCCC
Q 000270 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEND--VNYVQFSGCAVASRFSLADSSK 467 (1749)
Q Consensus 390 ~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~--V~sVafSpdg~as~~s~~~~~~ 467 (1749)
.|...|++++|+++|.+|++++.|+.|+|||+.++... ++..+.++... +++++|+|++
T Consensus 286 ~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~-------~~~~~~~~~~~~~~~~~~fsp~~------------ 346 (456)
T KOG0266|consen 286 GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL-------CLKLLSGAENSAPVTSVQFSPNG------------ 346 (456)
T ss_pred ccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee-------eeecccCCCCCCceeEEEECCCC------------
Confidence 68889999999999999999999999999999764310 34455666555 9999999988
Q ss_pred CCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCC---Cee
Q 000270 468 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR---GVN 544 (1749)
Q Consensus 468 ~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~---~Vt 544 (1749)
.+|++++.|+.+++|++...... ..+.+|.. .+.
T Consensus 347 --------------~~ll~~~~d~~~~~w~l~~~~~~-----------------------------~~~~~~~~~~~~~~ 383 (456)
T KOG0266|consen 347 --------------KYLLSASLDRTLKLWDLRSGKSV-----------------------------GTYTGHSNLVRCIF 383 (456)
T ss_pred --------------cEEEEecCCCeEEEEEccCCcce-----------------------------eeecccCCcceeEe
Confidence 89999999999999999864422 22233333 345
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCC-CCCeEEEEEcCCCCcEEEEEe--CCCcEEEEeCC
Q 000270 545 MIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH-TESTYVLDVHPFNPRIAMSAG--YDGKTIVWDIW 613 (1749)
Q Consensus 545 sVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH-~~~VtsLafSPdd~rlLaSgs--~DGtIrVWDl~ 613 (1749)
+..+++.|.++++|+.|+.|++||+.++..+..+.+| ...|..+.++| ...++++++ .|+.|++|...
T Consensus 384 ~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~-~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 384 SPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHP-TENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCC-CcCeeeecCcCCCceEEEecCC
Confidence 5566889999999999999999999999999999999 89999999999 778888888 79999999753
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=278.00 Aligned_cols=294 Identities=22% Similarity=0.383 Sum_probs=247.8
Q ss_pred cceEEEEccCCCCEEEEEECCC-CCEEEEEeCCcEEEEEECCC---CeEEEEE-ccCCCCeEEEEEcCCCcEEEEEeCCC
Q 000270 233 MQNIKRVRGHRNAVYCAIFDRS-GRYVITGSDDRLVKIWSMET---AYCLASC-RGHEGDITDLAVSSNNALVASASNDC 307 (1749)
Q Consensus 233 ~~~i~tL~GH~~~Vt~VaFSPD-G~~LATGS~DGtVrIWDl~T---g~~l~tL-~gHs~~VtsLafSPDg~lLASGS~DG 307 (1749)
...++.+.||.+.|..++|+|- |..||||+.|..|+||+... ..+...+ .+|...|.++||+|.|++||+||.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 4567899999999999999998 99999999999999999984 3444444 37999999999999999999999999
Q ss_pred eEEEEECCCC--ceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCC
Q 000270 308 IIRVWRLPDG--LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS 385 (1749)
Q Consensus 308 tIrVWDl~tg--k~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~ 385 (1749)
++.||.-..+ +++.+|.||...|.+++|+++|. +||+++.|..|.||.+..+.....+
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~---~LATCSRDKSVWiWe~deddEfec~----------------- 143 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN---YLATCSRDKSVWIWEIDEDDEFECI----------------- 143 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCC---EEEEeeCCCeEEEEEecCCCcEEEE-----------------
Confidence 9999986654 78999999999999999999998 9999999999999998755433222
Q ss_pred CCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccC
Q 000270 386 SSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 465 (1749)
Q Consensus 386 ~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~ 465 (1749)
.....|...|..+.|+|...+|++++.|.+|++|.-.. .....+..++.+|.+.|.+++|.+.|
T Consensus 144 aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~------dddW~c~~tl~g~~~TVW~~~F~~~G---------- 207 (312)
T KOG0645|consen 144 AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED------DDDWECVQTLDGHENTVWSLAFDNIG---------- 207 (312)
T ss_pred eeeccccccccEEEEcCCcceeEEeccCCeEEEEeecC------CCCeeEEEEecCccceEEEEEecCCC----------
Confidence 22467889999999999999999999999999998742 23467889999999999999999987
Q ss_pred CCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeE
Q 000270 466 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNM 545 (1749)
Q Consensus 466 ~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~Vts 545 (1749)
..|++++.|++|+||...+.- ...|...+..
T Consensus 208 ----------------~rl~s~sdD~tv~Iw~~~~~~---------------------------------~~~~sr~~Y~ 238 (312)
T KOG0645|consen 208 ----------------SRLVSCSDDGTVSIWRLYTDL---------------------------------SGMHSRALYD 238 (312)
T ss_pred ----------------ceEEEecCCcceEeeeeccCc---------------------------------chhcccceEe
Confidence 799999999999999754210 1225667888
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCC------ceEE-EecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 000270 546 IVWSLDNRFVLAAIMDCRICVWNAADG------SLVH-SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1749)
Q Consensus 546 VafSPDG~~LATGs~DGtI~VWDl~tg------klv~-tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~ 613 (1749)
++|. ...||+++.|+.|+||--..+ +++. .-..|...|++|+|.|....+|++||.||.|++|.+.
T Consensus 239 v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 239 VPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred eeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 9998 568999999999999986642 1121 2346888999999999657889999999999999874
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=280.87 Aligned_cols=286 Identities=19% Similarity=0.243 Sum_probs=252.6
Q ss_pred EEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEE
Q 000270 278 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW 357 (1749)
Q Consensus 278 l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIW 357 (1749)
.++|+||.+.|.++.|++|.++|+++|.||.+.|||.-+...+..+.-....|..++|+|.++ ++|+|+-|..+.||
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~---~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGN---FVACGGLDNKCSIY 124 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCC---eEEecCcCceeEEE
Confidence 378999999999999999999999999999999999999888888888899999999999998 99999999999999
Q ss_pred EcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCccee
Q 000270 358 DARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID 437 (1749)
Q Consensus 358 Dl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~ 437 (1749)
++.+....... .......+|.+.+.|+.|-.|+ .|++++.|.+.-+||+.+ +..+.
T Consensus 125 ~ls~~d~~g~~--------------~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~---------g~~~~ 180 (343)
T KOG0286|consen 125 PLSTRDAEGNV--------------RVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIET---------GQQTQ 180 (343)
T ss_pred ecccccccccc--------------eeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEccc---------ceEEE
Confidence 99855211111 1122346799999999999865 688999999999999976 55788
Q ss_pred eecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccC
Q 000270 438 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLK 517 (1749)
Q Consensus 438 ~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~ 517 (1749)
.+.+|.+.|.++.++|.. ++.|++|+-|+..+|||++.
T Consensus 181 ~f~GH~gDV~slsl~p~~-------------------------~ntFvSg~cD~~aklWD~R~----------------- 218 (343)
T KOG0286|consen 181 VFHGHTGDVMSLSLSPSD-------------------------GNTFVSGGCDKSAKLWDVRS----------------- 218 (343)
T ss_pred EecCCcccEEEEecCCCC-------------------------CCeEEecccccceeeeeccC-----------------
Confidence 999999999999999942 28999999999999999996
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCC--CCCeEEEEEcCCCC
Q 000270 518 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH--TESTYVLDVHPFNP 595 (1749)
Q Consensus 518 v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH--~~~VtsLafSPdd~ 595 (1749)
+..++.+.+|...|++|.|.|+|.-+++|+.|++.++||++..+.+..+... ..+|++++||. .+
T Consensus 219 ------------~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~-SG 285 (343)
T KOG0286|consen 219 ------------GQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK-SG 285 (343)
T ss_pred ------------cceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc-cc
Confidence 4567888999999999999999999999999999999999999999888743 45899999999 88
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEEeee--------eccCCCEEEEEcCCCeEEEEE
Q 000270 596 RIAMSAGYDGKTIVWDIWEGIPIRIYEIS--------RFRDGASIILSDDVGQLYILN 645 (1749)
Q Consensus 596 rlLaSgs~DGtIrVWDl~tGk~l~tl~~~--------~~sDG~~LAsgd~DG~I~IWd 645 (1749)
++|++|..|.++.|||.-.++.+..+.+| ..+||.-|++|+.|..|+||.
T Consensus 286 RlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 286 RLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999999988876 234999999999999999994
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-30 Score=296.42 Aligned_cols=288 Identities=18% Similarity=0.320 Sum_probs=252.6
Q ss_pred CCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEe
Q 000270 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL 323 (1749)
Q Consensus 244 ~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL 323 (1749)
..|+|++|+.+|..||||+.||.++||+.. |.++.+|..|.++|.+|.|+..|++|++++.|+++.|||..+|.....+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF 314 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee
Confidence 479999999999999999999999999976 6788999999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCC
Q 000270 324 RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN 403 (1749)
Q Consensus 324 ~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPD 403 (1749)
.-|..+-..|.|-.+. .|++++.||.|+|+.+....++.++ .+|.+.|.++.|.|.
T Consensus 315 ~~~s~~~lDVdW~~~~----~F~ts~td~~i~V~kv~~~~P~~t~--------------------~GH~g~V~alk~n~t 370 (524)
T KOG0273|consen 315 EFHSAPALDVDWQSND----EFATSSTDGCIHVCKVGEDRPVKTF--------------------IGHHGEVNALKWNPT 370 (524)
T ss_pred eeccCCccceEEecCc----eEeecCCCceEEEEEecCCCcceee--------------------ecccCceEEEEECCC
Confidence 9899887889998875 5999999999999998776655554 459999999999999
Q ss_pred CCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCE
Q 000270 404 GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDN 483 (1749)
Q Consensus 404 G~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~ 483 (1749)
|.+|++++.|++++||.... ......+.+|...|+.+.|+|.+... .....+..
T Consensus 371 g~LLaS~SdD~TlkiWs~~~---------~~~~~~l~~Hskei~t~~wsp~g~v~-----------------~n~~~~~~ 424 (524)
T KOG0273|consen 371 GSLLASCSDDGTLKIWSMGQ---------SNSVHDLQAHSKEIYTIKWSPTGPVT-----------------SNPNMNLM 424 (524)
T ss_pred CceEEEecCCCeeEeeecCC---------CcchhhhhhhccceeeEeecCCCCcc-----------------CCCcCCce
Confidence 99999999999999999854 34567789999999999999987221 11112368
Q ss_pred EEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCe
Q 000270 484 IVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCR 563 (1749)
Q Consensus 484 LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGt 563 (1749)
|++++.|++|++||+.. +.++..+..|..+|.+++|||+|++||+|+.||.
T Consensus 425 l~sas~dstV~lwdv~~-----------------------------gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~ 475 (524)
T KOG0273|consen 425 LASASFDSTVKLWDVES-----------------------------GVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGC 475 (524)
T ss_pred EEEeecCCeEEEEEccC-----------------------------CceeEeeccCCCceEEEEecCCCcEEEecCCCCe
Confidence 99999999999999986 4456677889999999999999999999999999
Q ss_pred EEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 000270 564 ICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1749)
Q Consensus 564 I~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~ 613 (1749)
|+||+..++++++.+.+.. .|+.|+|+..+ ..|..+-.||.+++-|+.
T Consensus 476 V~iws~~~~~l~~s~~~~~-~Ifel~Wn~~G-~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 476 VHIWSTKTGKLVKSYQGTG-GIFELCWNAAG-DKLGACASDGSVCVLDLR 523 (524)
T ss_pred eEeccccchheeEeecCCC-eEEEEEEcCCC-CEEEEEecCCCceEEEec
Confidence 9999999999999998754 49999999955 666667779999998874
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=316.14 Aligned_cols=250 Identities=22% Similarity=0.438 Sum_probs=223.3
Q ss_pred eEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCC-------------------------------CeEEEEEcc
Q 000270 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET-------------------------------AYCLASCRG 283 (1749)
Q Consensus 235 ~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~T-------------------------------g~~l~tL~g 283 (1749)
+..++..-...|+|+.|++|+..||.|..|..|++|.+.. +....++.|
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G 449 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG 449 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence 3445555567899999999999999999999999998762 122345789
Q ss_pred CCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCc
Q 000270 284 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ 363 (1749)
Q Consensus 284 Hs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~ 363 (1749)
|.++|..+.|+|+.++|+++|.|++||+|.+.+..++..++||..+|+.+.|+|.| ++|||++.|++.++|......
T Consensus 450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G---yYFatas~D~tArLWs~d~~~ 526 (707)
T KOG0263|consen 450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG---YYFATASHDQTARLWSTDHNK 526 (707)
T ss_pred CCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc---eEEEecCCCceeeeeecccCC
Confidence 99999999999999999999999999999999999999999999999999999987 499999999999999987765
Q ss_pred ccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCC
Q 000270 364 FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE 443 (1749)
Q Consensus 364 ~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~ 443 (1749)
.+..+ .+|...|.|+.|+|+..++++|+.|.+||+||+.+ +..++.+.||.
T Consensus 527 PlRif--------------------aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~---------G~~VRiF~GH~ 577 (707)
T KOG0263|consen 527 PLRIF--------------------AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVST---------GNSVRIFTGHK 577 (707)
T ss_pred chhhh--------------------cccccccceEEECCcccccccCCCCceEEEEEcCC---------CcEEEEecCCC
Confidence 44433 57888999999999999999999999999999976 45688999999
Q ss_pred CCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCC
Q 000270 444 NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPM 523 (1749)
Q Consensus 444 ~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~ 523 (1749)
++|.+|+|+|+| .+|++|+.||.|.|||+.++
T Consensus 578 ~~V~al~~Sp~G--------------------------r~LaSg~ed~~I~iWDl~~~---------------------- 609 (707)
T KOG0263|consen 578 GPVTALAFSPCG--------------------------RYLASGDEDGLIKIWDLANG---------------------- 609 (707)
T ss_pred CceEEEEEcCCC--------------------------ceEeecccCCcEEEEEcCCC----------------------
Confidence 999999999998 89999999999999999863
Q ss_pred CCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000270 524 PPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD 571 (1749)
Q Consensus 524 ~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~t 571 (1749)
..+..+.+|.+.|.++.||.||..||+|+.|++|++||+..
T Consensus 610 -------~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 610 -------SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred -------cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 45567788989999999999999999999999999999854
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=287.77 Aligned_cols=331 Identities=17% Similarity=0.262 Sum_probs=270.2
Q ss_pred ceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEE
Q 000270 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1749)
Q Consensus 234 ~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWD 313 (1749)
..+.+|.+|+..|++++.+|+.+++|||+.|..-.||++.+|..+..+.+|...|+++.|+.+|.+||||+.+|.|+||.
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCC
Q 000270 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1749)
Q Consensus 314 l~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~ 393 (1749)
..++.....+......|.-+.|+|.+. .|++|+.||.|.+|.+......+.+ .+|+.
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~---illAG~~DGsvWmw~ip~~~~~kv~--------------------~Gh~~ 191 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAH---ILLAGSTDGSVWMWQIPSQALCKVM--------------------SGHNS 191 (399)
T ss_pred cccCceEEEeecccCceEEEEeccccc---EEEeecCCCcEEEEECCCcceeeEe--------------------cCCCC
Confidence 999998888877777888999999765 8999999999999999876444333 46888
Q ss_pred ceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecC-CCCCeEEEEEcCCCcccccccccCCCCCCCC
Q 000270 394 QIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG-HENDVNYVQFSGCAVASRFSLADSSKEDSTP 472 (1749)
Q Consensus 394 ~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~g-H~~~V~sVafSpdg~as~~s~~~~~~~~~~~ 472 (1749)
.++|-.|.|+|+.+++|..||+|++|+..++. ++..+.+ ......++.++..+
T Consensus 192 ~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~---------p~~~~~~~e~~~~~~~~~~~~~----------------- 245 (399)
T KOG0296|consen 192 PCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQ---------PLHKITQAEGLELPCISLNLAG----------------- 245 (399)
T ss_pred CcccccccCCCceEEEEecCceEEEEecCCCc---------eeEEecccccCcCCcccccccc-----------------
Confidence 89999999999999999999999999997642 2332221 12334455555444
Q ss_pred cccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCC---CCeeEEEEc
Q 000270 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP---RGVNMIVWS 549 (1749)
Q Consensus 473 ~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~---~~VtsVafS 549 (1749)
..++.|+.++.+.+-+..+++...... +........+. ..|.++.||
T Consensus 246 ---------~~~~~g~~e~~~~~~~~~sgKVv~~~n---------------------~~~~~l~~~~e~~~esve~~~~s 295 (399)
T KOG0296|consen 246 ---------STLTKGNSEGVACGVNNGSGKVVNCNN---------------------GTVPELKPSQEELDESVESIPSS 295 (399)
T ss_pred ---------ceeEeccCCccEEEEccccceEEEecC---------------------CCCccccccchhhhhhhhhcccc
Confidence 678889999999888777655322110 00000111222 235556666
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeeec---
Q 000270 550 LDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF--- 626 (1749)
Q Consensus 550 PDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~~~--- 626 (1749)
..-.+.|+|+-||+|.|||+...++.+.+. |...|+.+.|-+ ..+|++++.+|.|++||.++|+++.++.+|..
T Consensus 296 s~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il 372 (399)
T KOG0296|consen 296 SKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGIL 372 (399)
T ss_pred cccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchhee
Confidence 677889999999999999998877766654 788899999987 45777899999999999999999999998743
Q ss_pred -----cCCCEEEEEcCCCeEEEEEC
Q 000270 627 -----RDGASIILSDDVGQLYILNT 646 (1749)
Q Consensus 627 -----sDG~~LAsgd~DG~I~IWdl 646 (1749)
++++++++++.|+...||+.
T Consensus 373 ~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 373 DFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred EEEEcCCCcEEEEecCCCeEEEEec
Confidence 39999999999999999986
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=291.01 Aligned_cols=293 Identities=19% Similarity=0.290 Sum_probs=256.0
Q ss_pred cccceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEE
Q 000270 231 QKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIR 310 (1749)
Q Consensus 231 ~~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIr 310 (1749)
..+++.+.+.||.+.|.||++.|-..+++||+.|++|+|||+.+|++..++.||...|..++||+-..||++++.|+.|+
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 45778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCC
Q 000270 311 VWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGP 390 (1749)
Q Consensus 311 VWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~ 390 (1749)
.||+...+.++.+.||-..|.|++.+|.-. .|++|+.|.+++|||+++...+..+ .+
T Consensus 219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTld---vl~t~grDst~RvWDiRtr~~V~~l--------------------~G 275 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLD---VLVTGGRDSTIRVWDIRTRASVHVL--------------------SG 275 (460)
T ss_pred EEechhhhhHHHhccccceeEEEeccccce---eEEecCCcceEEEeeecccceEEEe--------------------cC
Confidence 999999999999999999999999999876 8999999999999999988766555 46
Q ss_pred CCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCC
Q 000270 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDS 470 (1749)
Q Consensus 391 h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~ 470 (1749)
|...|..+.+.|-...+++|+.|++|++||++. ++.+.++..|...|.+++.+|..
T Consensus 276 H~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~a---------gkt~~tlt~hkksvral~lhP~e--------------- 331 (460)
T KOG0285|consen 276 HTNPVASVMCQPTDPQVITGSHDSTVRLWDLRA---------GKTMITLTHHKKSVRALCLHPKE--------------- 331 (460)
T ss_pred CCCcceeEEeecCCCceEEecCCceEEEeeecc---------CceeEeeecccceeeEEecCCch---------------
Confidence 889999999999778899999999999999976 45677889999999999999975
Q ss_pred CCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcC
Q 000270 471 TPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL 550 (1749)
Q Consensus 471 ~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSP 550 (1749)
..|++++.| .|+-|++.. +..+..+.+|..-|++++...
T Consensus 332 -----------~~fASas~d-nik~w~~p~-----------------------------g~f~~nlsgh~~iintl~~ns 370 (460)
T KOG0285|consen 332 -----------NLFASASPD-NIKQWKLPE-----------------------------GEFLQNLSGHNAIINTLSVNS 370 (460)
T ss_pred -----------hhhhccCCc-cceeccCCc-----------------------------cchhhccccccceeeeeeecc
Confidence 567777766 578887764 333445677888899999887
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEec-----C---CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 000270 551 DNRFVLAAIMDCRICVWNAADGSLVHSLT-----G---HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1749)
Q Consensus 551 DG~~LATGs~DGtI~VWDl~tgklv~tL~-----g---H~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~ 613 (1749)
|| ++++|+..|.|.+||..+|-..+.+. | ....|++.+|.. .+..|+||..|.+|++|.-.
T Consensus 371 D~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDk-tg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 371 DG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDK-TGSRLITGEADKTIKMYKED 439 (460)
T ss_pred Cc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecc-cCceEEeccCCcceEEEecc
Confidence 76 78889999999999999987665442 1 245689999988 55666799999999999643
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-31 Score=295.41 Aligned_cols=278 Identities=23% Similarity=0.453 Sum_probs=241.1
Q ss_pred CCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEE
Q 000270 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS 321 (1749)
Q Consensus 242 H~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~ 321 (1749)
....|+|+.++ ...+++|..|.+|+|||..+..+++.+.||++.|.|+.|. .++|++|+.|.+|+|||+++|+++.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence 45689999996 4479999999999999999999999999999999999985 6699999999999999999999999
Q ss_pred EecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEc
Q 000270 322 VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN 401 (1749)
Q Consensus 322 tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafS 401 (1749)
++-+|...|..+.|+.. ++++++.|.+|.+||+.....+... ....+|...|+.+.|+
T Consensus 272 tlihHceaVLhlrf~ng-----~mvtcSkDrsiaVWdm~sps~it~r-----------------rVLvGHrAaVNvVdfd 329 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSNG-----YMVTCSKDRSIAVWDMASPTDITLR-----------------RVLVGHRAAVNVVDFD 329 (499)
T ss_pred HHhhhcceeEEEEEeCC-----EEEEecCCceeEEEeccCchHHHHH-----------------HHHhhhhhheeeeccc
Confidence 99999999999999874 8999999999999999765422211 1235688889999995
Q ss_pred CCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCC
Q 000270 402 ANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCH 481 (1749)
Q Consensus 402 PDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~ 481 (1749)
.+++++++.|.+|++|++.+ ...+.++.+|...|-|+++..
T Consensus 330 --~kyIVsASgDRTikvW~~st---------~efvRtl~gHkRGIAClQYr~---------------------------- 370 (499)
T KOG0281|consen 330 --DKYIVSASGDRTIKVWSTST---------CEFVRTLNGHKRGIACLQYRD---------------------------- 370 (499)
T ss_pred --cceEEEecCCceEEEEeccc---------eeeehhhhcccccceehhccC----------------------------
Confidence 45999999999999999976 567889999999999998863
Q ss_pred CEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCC
Q 000270 482 DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD 561 (1749)
Q Consensus 482 ~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~D 561 (1749)
.++++|+.|.+|++||+.. |.++..+.+|..-|.++.| |.+.|++|+.|
T Consensus 371 rlvVSGSSDntIRlwdi~~-----------------------------G~cLRvLeGHEeLvRciRF--d~krIVSGaYD 419 (499)
T KOG0281|consen 371 RLVVSGSSDNTIRLWDIEC-----------------------------GACLRVLEGHEELVRCIRF--DNKRIVSGAYD 419 (499)
T ss_pred eEEEecCCCceEEEEeccc-----------------------------cHHHHHHhchHHhhhheee--cCceeeecccc
Confidence 6899999999999999986 4456677889999999999 67899999999
Q ss_pred CeEEEEECCCCc---------eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceE
Q 000270 562 CRICVWNAADGS---------LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618 (1749)
Q Consensus 562 GtI~VWDl~tgk---------lv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l 618 (1749)
|+|+|||+.++. ++.++..|++.|+.+.| +...+++++.|.+|.|||..+|.+-
T Consensus 420 GkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF---D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 420 GKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF---DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ceEEEEecccccCCcccccchHHHhhhhccceeEEEee---cceEEEeccCCCeEEEEEcCCCCcc
Confidence 999999998764 45566789999999999 4577889999999999999877543
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=298.82 Aligned_cols=283 Identities=20% Similarity=0.366 Sum_probs=245.6
Q ss_pred cCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceE
Q 000270 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI 320 (1749)
Q Consensus 241 GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l 320 (1749)
.-...|..|.|.|+|+.|+||+..|.+.+|+..+...-..++.|..+|+++.|++++.+++||+.+|.|++|+..- ..+
T Consensus 94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnV 172 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNV 172 (464)
T ss_pred ccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhh
Confidence 3456799999999999999999999999999865444445678999999999999999999999999999999653 334
Q ss_pred EEecCC-CCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEE
Q 000270 321 SVLRGH-TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCA 399 (1749)
Q Consensus 321 ~tL~gH-s~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~La 399 (1749)
..+.+| ...|++++|+|... .|+++++||+|+|||....+....+ .+|.-.|.|++
T Consensus 173 k~~~ahh~eaIRdlafSpnDs---kF~t~SdDg~ikiWdf~~~kee~vL--------------------~GHgwdVksvd 229 (464)
T KOG0284|consen 173 KIIQAHHAEAIRDLAFSPNDS---KFLTCSDDGTIKIWDFRMPKEERVL--------------------RGHGWDVKSVD 229 (464)
T ss_pred HHhhHhhhhhhheeccCCCCc---eeEEecCCCeEEEEeccCCchhhee--------------------ccCCCCcceec
Confidence 445544 48999999999776 8999999999999998876654443 56888899999
Q ss_pred EcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCccccccc
Q 000270 400 FNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWF 479 (1749)
Q Consensus 400 fSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~ 479 (1749)
|+|...+||+|+.|..|++||.++ +.++.++.+|...|..+.|.+++
T Consensus 230 WHP~kgLiasgskDnlVKlWDprS---------g~cl~tlh~HKntVl~~~f~~n~------------------------ 276 (464)
T KOG0284|consen 230 WHPTKGLIASGSKDNLVKLWDPRS---------GSCLATLHGHKNTVLAVKFNPNG------------------------ 276 (464)
T ss_pred cCCccceeEEccCCceeEeecCCC---------cchhhhhhhccceEEEEEEcCCC------------------------
Confidence 999999999999999999999977 55788999999999999999987
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCC-CEEEEE
Q 000270 480 CHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN-RFVLAA 558 (1749)
Q Consensus 480 ~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG-~~LATG 558 (1749)
++|+++|.|..++++|+++. ..+..+.+|...|++++|+|-. .+|.+|
T Consensus 277 --N~Llt~skD~~~kv~DiR~m-----------------------------kEl~~~r~Hkkdv~~~~WhP~~~~lftsg 325 (464)
T KOG0284|consen 277 --NWLLTGSKDQSCKVFDIRTM-----------------------------KELFTYRGHKKDVTSLTWHPLNESLFTSG 325 (464)
T ss_pred --CeeEEccCCceEEEEehhHh-----------------------------HHHHHhhcchhhheeeccccccccceeec
Confidence 89999999999999999852 3456678899999999999965 577889
Q ss_pred eCCCeEEEEECCCCceEEEe-cCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 000270 559 IMDCRICVWNAADGSLVHSL-TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1749)
Q Consensus 559 s~DGtI~VWDl~tgklv~tL-~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl 612 (1749)
+.||.|..|.+...+++..+ .+|...|++|+|+| =+.+|++|+.|.++++|.-
T Consensus 326 g~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hP-lGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 326 GSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHP-LGHILATGSNDRTVRFWTR 379 (464)
T ss_pred cCCCceEEEeccccccccCCCcccccceeeeeccc-cceeEeecCCCcceeeecc
Confidence 99999999999866666655 48999999999999 7799999999999999974
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.1e-30 Score=286.89 Aligned_cols=285 Identities=24% Similarity=0.416 Sum_probs=251.5
Q ss_pred CeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcE
Q 000270 275 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354 (1749)
Q Consensus 275 g~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtI 354 (1749)
.++.+.+.+|.++|.|+++.|.+.+|++|+.|++|+|||+.+|++..++.||-..|..+++++... +|++++.|+.|
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHp---YlFs~gedk~V 217 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHP---YLFSAGEDKQV 217 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCc---eEEEecCCCee
Confidence 456677889999999999999999999999999999999999999999999999999999999776 99999999999
Q ss_pred EEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCc
Q 000270 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNH 434 (1749)
Q Consensus 355 rIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~ 434 (1749)
+.||+...+.+..+ .+|-..|.|++.+|.-..|++|+.|.+++|||+++ ..
T Consensus 218 KCwDLe~nkvIR~Y--------------------hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt---------r~ 268 (460)
T KOG0285|consen 218 KCWDLEYNKVIRHY--------------------HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT---------RA 268 (460)
T ss_pred EEEechhhhhHHHh--------------------ccccceeEEEeccccceeEEecCCcceEEEeeecc---------cc
Confidence 99999998877765 36788899999999999999999999999999987 55
Q ss_pred ceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCcccccccccc
Q 000270 435 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 514 (1749)
Q Consensus 435 ~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~ 514 (1749)
.+..+.||..+|..|.+.|.. ..+++|+.|++|++||+..++
T Consensus 269 ~V~~l~GH~~~V~~V~~~~~d--------------------------pqvit~S~D~tvrlWDl~agk------------ 310 (460)
T KOG0285|consen 269 SVHVLSGHTNPVASVMCQPTD--------------------------PQVITGSHDSTVRLWDLRAGK------------ 310 (460)
T ss_pred eEEEecCCCCcceeEEeecCC--------------------------CceEEecCCceEEEeeeccCc------------
Confidence 688999999999999998765 689999999999999998643
Q ss_pred ccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCC
Q 000270 515 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN 594 (1749)
Q Consensus 515 ~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd 594 (1749)
....+..|...|.+++.+|....+|+++.| .|+-|++..|..++.+.+|..-|.+|+... +
T Consensus 311 -----------------t~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~ns-D 371 (460)
T KOG0285|consen 311 -----------------TMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNS-D 371 (460)
T ss_pred -----------------eeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeecc-C
Confidence 344566788899999999999999999887 499999999999999999999999999987 4
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceEEEEeee---------------ecc-CCCEEEEEcCCCeEEEEECCCC
Q 000270 595 PRIAMSAGYDGKTIVWDIWEGIPIRIYEIS---------------RFR-DGASIILSDDVGQLYILNTGQG 649 (1749)
Q Consensus 595 ~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~---------------~~s-DG~~LAsgd~DG~I~IWdl~tG 649 (1749)
.++++|++.|.|.+||..+|-..+.+... .|. .|..|+++..|..|.+|.-...
T Consensus 372 -~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 372 -GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred -ceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecccc
Confidence 36779999999999999998766655321 121 7889999999999999986443
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=285.80 Aligned_cols=309 Identities=20% Similarity=0.314 Sum_probs=263.3
Q ss_pred CccccccceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCC
Q 000270 227 STMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND 306 (1749)
Q Consensus 227 ~~~~~~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~D 306 (1749)
.|...+...+..+.||...|+|+.|+.||.+||||.-+|.|+||.+.++.....+..--..|.-|.|+|-+..|++|+.|
T Consensus 90 lW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~D 169 (399)
T KOG0296|consen 90 LWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTD 169 (399)
T ss_pred EEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCC
Confidence 35556677889999999999999999999999999999999999999999999887777889999999999999999999
Q ss_pred CeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCC
Q 000270 307 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1749)
Q Consensus 307 GtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~ 386 (1749)
|.|-+|.+.++...+.+.||..++++-.|.|+|+ .++++..||+|++|++.+++.+..+..
T Consensus 170 GsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK---r~~tgy~dgti~~Wn~ktg~p~~~~~~---------------- 230 (399)
T KOG0296|consen 170 GSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK---RILTGYDDGTIIVWNPKTGQPLHKITQ---------------- 230 (399)
T ss_pred CcEEEEECCCcceeeEecCCCCCcccccccCCCc---eEEEEecCceEEEEecCCCceeEEecc----------------
Confidence 9999999999888999999999999999999998 899999999999999999987766631
Q ss_pred CCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCC
Q 000270 387 SAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSS 466 (1749)
Q Consensus 387 s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~ 466 (1749)
.......|+.++..+..++.|..++.+++.+..+++......+ ........+...+.+|.+.|....
T Consensus 231 ---~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~-~~~~l~~~~e~~~esve~~~~ss~--------- 297 (399)
T KOG0296|consen 231 ---AEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG-TVPELKPSQEELDESVESIPSSSK--------- 297 (399)
T ss_pred ---cccCcCCccccccccceeEeccCCccEEEEccccceEEEecCC-CCccccccchhhhhhhhhcccccc---------
Confidence 2244577899999999999999999999988877654333222 112223456666777776654310
Q ss_pred CCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEE
Q 000270 467 KEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMI 546 (1749)
Q Consensus 467 ~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsV 546 (1749)
-.+.++|+-||+|.|||+...+ .+....|..+|+.+
T Consensus 298 --------------lpL~A~G~vdG~i~iyD~a~~~------------------------------~R~~c~he~~V~~l 333 (399)
T KOG0296|consen 298 --------------LPLAACGSVDGTIAIYDLAAST------------------------------LRHICEHEDGVTKL 333 (399)
T ss_pred --------------cchhhcccccceEEEEecccch------------------------------hheeccCCCceEEE
Confidence 1578999999999999998533 23345688889999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 000270 547 VWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1749)
Q Consensus 547 afSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~ 613 (1749)
.|-+ ..+|++++.+|.|++||.++|+++.++.||...|.+++++| +.++++|+|.|++.+|+++.
T Consensus 334 ~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 334 KWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 9998 78999999999999999999999999999999999999999 88899999999999999874
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=272.18 Aligned_cols=295 Identities=15% Similarity=0.268 Sum_probs=254.4
Q ss_pred hhhhhccccCCCccccccceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCe--EEEEEccCCCCeEEEEE
Q 000270 216 IRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY--CLASCRGHEGDITDLAV 293 (1749)
Q Consensus 216 l~~~~~~~a~p~~~~~~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~--~l~tL~gHs~~VtsLaf 293 (1749)
|..+.|+..+-.|...++.+.++++-..+.|+.+.+.||++.||+|+. -.|++||+.++. .+.+|.+|...|+++.|
T Consensus 13 LvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF 91 (311)
T KOG0315|consen 13 LVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGF 91 (311)
T ss_pred EEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEE
Confidence 445667777778888899999999999999999999999999999976 479999998764 68999999999999999
Q ss_pred cCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCC
Q 000270 294 SSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP 373 (1749)
Q Consensus 294 SPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~ 373 (1749)
..+|+.+++||.||+++|||++...+.+.+. |..+|++|..+|+.. -|++|..+|.|++||+....+...+.
T Consensus 92 ~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQt---eLis~dqsg~irvWDl~~~~c~~~li---- 163 (311)
T KOG0315|consen 92 QCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQT---ELISGDQSGNIRVWDLGENSCTHELI---- 163 (311)
T ss_pred eecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcc---eEEeecCCCcEEEEEccCCccccccC----
Confidence 9999999999999999999999976666665 779999999999876 89999999999999999876655442
Q ss_pred CCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcC
Q 000270 374 SDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSG 453 (1749)
Q Consensus 374 ~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSp 453 (1749)
......|.+++..|||.+|+++...|..++|++-... ...+..++..+..|.+-+..+.++|
T Consensus 164 ---------------Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~---~~s~l~P~~k~~ah~~~il~C~lSP 225 (311)
T KOG0315|consen 164 ---------------PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQ---TASELEPVHKFQAHNGHILRCLLSP 225 (311)
T ss_pred ---------------CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCC---ccccceEhhheecccceEEEEEECC
Confidence 1123569999999999999999999999999996632 2233455667899999999999999
Q ss_pred CCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCc
Q 000270 454 CAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR 533 (1749)
Q Consensus 454 dg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i 533 (1749)
++ ++|+++|.|.+++||+..+. ....
T Consensus 226 d~--------------------------k~lat~ssdktv~iwn~~~~----------------------------~kle 251 (311)
T KOG0315|consen 226 DV--------------------------KYLATCSSDKTVKIWNTDDF----------------------------FKLE 251 (311)
T ss_pred CC--------------------------cEEEeecCCceEEEEecCCc----------------------------eeeE
Confidence 98 89999999999999998752 0123
Q ss_pred ccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEc
Q 000270 534 QRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH 591 (1749)
Q Consensus 534 ~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafS 591 (1749)
..+.+|...+..++||.||+||+||+.|+.+++|++..++.++.+.||.....+++..
T Consensus 252 ~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 252 LVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 4567888999999999999999999999999999999999999999998877777653
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-30 Score=315.06 Aligned_cols=253 Identities=26% Similarity=0.442 Sum_probs=225.6
Q ss_pred EEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCC-------------------------------CceEEEecC
Q 000270 277 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPD-------------------------------GLPISVLRG 325 (1749)
Q Consensus 277 ~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~t-------------------------------gk~l~tL~g 325 (1749)
+..++......++|..|++|+.+||.|-.|..|++|.+.. +....++.|
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G 449 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG 449 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence 4455555567899999999999999999999999998852 112345789
Q ss_pred CCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCC
Q 000270 326 HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT 405 (1749)
Q Consensus 326 Hs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~ 405 (1749)
|+++|..+.|+|+.+ +|+++++|++|++|.+.+..++-.. .+|..+|+++.|+|-|-
T Consensus 450 H~GPVyg~sFsPd~r---fLlScSED~svRLWsl~t~s~~V~y--------------------~GH~~PVwdV~F~P~Gy 506 (707)
T KOG0263|consen 450 HSGPVYGCSFSPDRR---FLLSCSEDSSVRLWSLDTWSCLVIY--------------------KGHLAPVWDVQFAPRGY 506 (707)
T ss_pred CCCceeeeeeccccc---ceeeccCCcceeeeecccceeEEEe--------------------cCCCcceeeEEecCCce
Confidence 999999999999987 9999999999999999987765443 57899999999999999
Q ss_pred EEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEE
Q 000270 406 VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIV 485 (1749)
Q Consensus 406 ~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~La 485 (1749)
+||+++.|++.++|.... ...++.+.+|-+.|.|+.|+|+. .+++
T Consensus 507 YFatas~D~tArLWs~d~---------~~PlRifaghlsDV~cv~FHPNs--------------------------~Y~a 551 (707)
T KOG0263|consen 507 YFATASHDQTARLWSTDH---------NKPLRIFAGHLSDVDCVSFHPNS--------------------------NYVA 551 (707)
T ss_pred EEEecCCCceeeeeeccc---------CCchhhhcccccccceEEECCcc--------------------------cccc
Confidence 999999999999999854 55678899999999999999997 8999
Q ss_pred EEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEE
Q 000270 486 TCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRIC 565 (1749)
Q Consensus 486 SgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~ 565 (1749)
+||.|.+|++||+.+ |..+..+.+|..+|++++|||+|++||+|+.||.|.
T Consensus 552 TGSsD~tVRlWDv~~-----------------------------G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~ 602 (707)
T KOG0263|consen 552 TGSSDRTVRLWDVST-----------------------------GNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIK 602 (707)
T ss_pred cCCCCceEEEEEcCC-----------------------------CcEEEEecCCCCceEEEEEcCCCceEeecccCCcEE
Confidence 999999999999986 445677889999999999999999999999999999
Q ss_pred EEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCce
Q 000270 566 VWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIP 617 (1749)
Q Consensus 566 VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~ 617 (1749)
|||+.+|.++..+.+|++.|++|.|+. ++.+||+||.|.+|++||+..-..
T Consensus 603 iWDl~~~~~v~~l~~Ht~ti~SlsFS~-dg~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 603 IWDLANGSLVKQLKGHTGTIYSLSFSR-DGNVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred EEEcCCCcchhhhhcccCceeEEEEec-CCCEEEecCCCCeEEEEEchhhcc
Confidence 999999999999999999999999999 788999999999999999865443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=293.18 Aligned_cols=287 Identities=20% Similarity=0.316 Sum_probs=254.3
Q ss_pred EEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECC
Q 000270 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP 315 (1749)
Q Consensus 236 i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~ 315 (1749)
.++|..|...|-||.|+|...+++++-..|.|.|||.+|...+++|.-..-+|.+..|-.-.+.+++|+.|..|+|++..
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence 45567799999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCce
Q 000270 316 DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395 (1749)
Q Consensus 316 tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~V 395 (1749)
+++.+..+..|...|.+|+.+|... +++++++|-+|++||....-.. ...+.+|.+.|
T Consensus 86 t~ekV~~FeAH~DyIR~iavHPt~P---~vLtsSDDm~iKlW~we~~wa~-------------------~qtfeGH~HyV 143 (794)
T KOG0276|consen 86 TGEKVKTFEAHSDYIRSIAVHPTLP---YVLTSSDDMTIKLWDWENEWAC-------------------EQTFEGHEHYV 143 (794)
T ss_pred cceeeEEeeccccceeeeeecCCCC---eEEecCCccEEEEeeccCceee-------------------eeEEcCcceEE
Confidence 9999999999999999999999876 9999999999999998754322 22346899999
Q ss_pred EEEEEcC-CCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcc
Q 000270 396 FCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 474 (1749)
Q Consensus 396 t~LafSP-DG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~ 474 (1749)
.+++|+| |.+.||+++-|++|+||.+.+ ..+..++.+|...|+||.|-+.+
T Consensus 144 Mqv~fnPkD~ntFaS~sLDrTVKVWslgs---------~~~nfTl~gHekGVN~Vdyy~~g------------------- 195 (794)
T KOG0276|consen 144 MQVAFNPKDPNTFASASLDRTVKVWSLGS---------PHPNFTLEGHEKGVNCVDYYTGG------------------- 195 (794)
T ss_pred EEEEecCCCccceeeeeccccEEEEEcCC---------CCCceeeeccccCcceEEeccCC-------------------
Confidence 9999999 678999999999999999954 34567889999999999998865
Q ss_pred cccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCE
Q 000270 475 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRF 554 (1749)
Q Consensus 475 ~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~ 554 (1749)
+..+|++|+.|.+|+|||+.+. .+++++.+|...|..++|+|.-..
T Consensus 196 -----dkpylIsgaDD~tiKvWDyQtk-----------------------------~CV~TLeGHt~Nvs~v~fhp~lpi 241 (794)
T KOG0276|consen 196 -----DKPYLISGADDLTIKVWDYQTK-----------------------------SCVQTLEGHTNNVSFVFFHPELPI 241 (794)
T ss_pred -----CcceEEecCCCceEEEeecchH-----------------------------HHHHHhhcccccceEEEecCCCcE
Confidence 1359999999999999999873 467788999999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 000270 555 VLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKT 607 (1749)
Q Consensus 555 LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtI 607 (1749)
|++|+.||+|+||+..|-++..++.-.-+.|++|+-.+ +.+.++.|.+.|.|
T Consensus 242 iisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k-~~~~i~vG~Deg~i 293 (794)
T KOG0276|consen 242 IISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHK-GDGKIAVGFDEGSV 293 (794)
T ss_pred EEEecCCccEEEecCcceehhhhhhcCCceEEEEeecC-CCCeEEEeccCCcE
Confidence 99999999999999999998888887778899999888 44455556555544
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=327.69 Aligned_cols=290 Identities=19% Similarity=0.321 Sum_probs=238.1
Q ss_pred EccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCC----e----EEEEEccCCCCeEEEEEcC-CCcEEEEEeCCCeE
Q 000270 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA----Y----CLASCRGHEGDITDLAVSS-NNALVASASNDCII 309 (1749)
Q Consensus 239 L~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg----~----~l~tL~gHs~~VtsLafSP-Dg~lLASGS~DGtI 309 (1749)
+.+|.+.|++++|+|+|++||||+.|+.|+||++.+. . .+..+. +...|.+++|++ ++.+||+++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4569999999999999999999999999999997532 1 223333 356899999987 57899999999999
Q ss_pred EEEECCCCceEEEecCCCCceEEEEecc-CCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCC
Q 000270 310 RVWRLPDGLPISVLRGHTAAVTAIAFSP-RPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 388 (1749)
Q Consensus 310 rVWDl~tgk~l~tL~gHs~~VtsIaFSP-dg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~ 388 (1749)
+|||+.+++.+..+.+|.+.|++++|+| ++. +|++|+.||+|++||+.++..+..+.
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~---~L~Sgs~Dg~v~iWd~~~~~~~~~~~------------------- 615 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPT---LLASGSDDGSVKLWSINQGVSIGTIK------------------- 615 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCC---EEEEEcCCCEEEEEECCCCcEEEEEe-------------------
Confidence 9999999999999999999999999997 554 89999999999999999877655442
Q ss_pred CCCCCceEEEEEc-CCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCC
Q 000270 389 GPQSHQIFCCAFN-ANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK 467 (1749)
Q Consensus 389 ~~h~~~Vt~LafS-PDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~ 467 (1749)
+...|.+++|+ ++|.+|++|+.||.|++||+++.. ..+..+.+|...|.++.|.. +
T Consensus 616 --~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~--------~~~~~~~~h~~~V~~v~f~~-~------------ 672 (793)
T PLN00181 616 --TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK--------LPLCTMIGHSKTVSYVRFVD-S------------ 672 (793)
T ss_pred --cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC--------ccceEecCCCCCEEEEEEeC-C------------
Confidence 12458899995 579999999999999999996531 23456789999999999973 3
Q ss_pred CCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEE
Q 000270 468 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 547 (1749)
Q Consensus 468 ~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVa 547 (1749)
..|++++.|++|+|||+.... ......++..+.+|...+++++
T Consensus 673 --------------~~lvs~s~D~~ikiWd~~~~~-----------------------~~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 673 --------------STLVSSSTDNTLKLWDLSMSI-----------------------SGINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred --------------CEEEEEECCCEEEEEeCCCCc-----------------------cccCCcceEEEcCCCCCeeEEE
Confidence 589999999999999987421 0011234556778888999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCceEEEe-------------cCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 000270 548 WSLDNRFVLAAIMDCRICVWNAADGSLVHSL-------------TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1749)
Q Consensus 548 fSPDG~~LATGs~DGtI~VWDl~tgklv~tL-------------~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl 612 (1749)
|++++.+||+|+.|+.|+||+...+..+..+ ..|...|.+++|+| ++.+|++|+.||.|+||++
T Consensus 716 ~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 716 LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC-CCCeEEEecCCCcEEEEec
Confidence 9999999999999999999998766544322 23556799999999 6778899999999999997
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-29 Score=303.66 Aligned_cols=328 Identities=20% Similarity=0.353 Sum_probs=279.6
Q ss_pred EEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCC
Q 000270 238 RVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG 317 (1749)
Q Consensus 238 tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tg 317 (1749)
.|+.-+..|-.++|+|...+++++-..|.|++||..-+.++..|..|.++|..++|+|.+.+++||+.|-.|+||+..+.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence 34556678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEE
Q 000270 318 LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFC 397 (1749)
Q Consensus 318 k~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~ 397 (1749)
+|+.+|.||-..|..+.|++.-. +++++|+|.+|+||+..+++++..+ .+|.+.|.|
T Consensus 84 rclftL~GHlDYVRt~~FHheyP---WIlSASDDQTIrIWNwqsr~~iavl--------------------tGHnHYVMc 140 (1202)
T KOG0292|consen 84 RCLFTLLGHLDYVRTVFFHHEYP---WILSASDDQTIRIWNWQSRKCIAVL--------------------TGHNHYVMC 140 (1202)
T ss_pred eehhhhccccceeEEeeccCCCc---eEEEccCCCeEEEEeccCCceEEEE--------------------ecCceEEEe
Confidence 99999999999999999999765 9999999999999999999988876 479999999
Q ss_pred EEEcCCCCEEEEecCCCcEEEEeCCCCCCCCC-------------------CC-CCcceeeecCCCCCeEEEEEcCCCcc
Q 000270 398 CAFNANGTVFVTGSSDTLARVWNACKPNTDDS-------------------DQ-PNHEIDVLSGHENDVNYVQFSGCAVA 457 (1749)
Q Consensus 398 LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s-------------------~~-~~~~i~~l~gH~~~V~sVafSpdg~a 457 (1749)
..|+|...++++++-|.+|||||+..-..... ++ .......+.||...|+.++|+|.-
T Consensus 141 AqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-- 218 (1202)
T KOG0292|consen 141 AQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-- 218 (1202)
T ss_pred eccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc--
Confidence 99999999999999999999999853211000 00 011234678999999999999975
Q ss_pred cccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCccccc
Q 000270 458 SRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL 537 (1749)
Q Consensus 458 s~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~ 537 (1749)
..|++|+.|..|++|.+...+ .-.+.+..
T Consensus 219 ------------------------pliVSG~DDRqVKlWrmnetK---------------------------aWEvDtcr 247 (1202)
T KOG0292|consen 219 ------------------------PLIVSGADDRQVKLWRMNETK---------------------------AWEVDTCR 247 (1202)
T ss_pred ------------------------ceEEecCCcceeeEEEecccc---------------------------ceeehhhh
Confidence 699999999999999887422 22345678
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCce
Q 000270 538 PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIP 617 (1749)
Q Consensus 538 ~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~ 617 (1749)
+|...|.++.|+|...+|++.+.|++|+|||+...+.+++|.-..+.-+.|+.|| ...++ .++.|+-+.|+.+....+
T Consensus 248 gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP-~lNLf-AAgHDsGm~VFkleRErp 325 (1202)
T KOG0292|consen 248 GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHP-ELNLF-AAGHDSGMIVFKLERERP 325 (1202)
T ss_pred cccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecC-Cccee-eeecCCceEEEEEcccCc
Confidence 8999999999999999999999999999999999999999988888899999999 44555 578899999999876666
Q ss_pred EEEEeeeeccCCCEEEEEcCCCeEEEEECCCCc
Q 000270 618 IRIYEISRFRDGASIILSDDVGQLYILNTGQGE 650 (1749)
Q Consensus 618 l~tl~~~~~sDG~~LAsgd~DG~I~IWdl~tGe 650 (1749)
..-+. |+.|...- +..|+-+|+.+.+
T Consensus 326 a~~v~------~n~LfYvk-d~~i~~~d~~t~~ 351 (1202)
T KOG0292|consen 326 AYAVN------GNGLFYVK-DRFIRSYDLRTQK 351 (1202)
T ss_pred eEEEc------CCEEEEEc-cceEEeeeccccc
Confidence 54443 34444443 6788889887643
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-30 Score=285.37 Aligned_cols=288 Identities=23% Similarity=0.382 Sum_probs=245.2
Q ss_pred cCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEE--------ccCCCCeEEEEEcCCCcEEEEEeCCCeEEEE
Q 000270 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASC--------RGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1749)
Q Consensus 241 GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL--------~gHs~~VtsLafSPDg~lLASGS~DGtIrVW 312 (1749)
|...-+-|..|||||+||++|+.||-|-|||..+|++.+.+ .-+..+|.|+.||.|..+||+|+.||.|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 55677899999999999999999999999999999876543 3578999999999999999999999999999
Q ss_pred ECCCCceEEEec-CCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCC
Q 000270 313 RLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQ 391 (1749)
Q Consensus 313 Dl~tgk~l~tL~-gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h 391 (1749)
.+.+|.|++.+. .|+..|+|+.|+.|+. .+++++.|.+++|.-+..|+++..+ .+|
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~S---qiLS~sfD~tvRiHGlKSGK~LKEf--------------------rGH 347 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNS---QILSASFDQTVRIHGLKSGKCLKEF--------------------RGH 347 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcc---hhhcccccceEEEeccccchhHHHh--------------------cCc
Confidence 999999999986 8999999999999987 8999999999999999999988776 578
Q ss_pred CCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCC
Q 000270 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDST 471 (1749)
Q Consensus 392 ~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~ 471 (1749)
...|+...|.++|..+++++.||+|+||+..+..+.....+ .+..-+|++|..-|..
T Consensus 348 sSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~-------~~~d~~vnsv~~~PKn---------------- 404 (508)
T KOG0275|consen 348 SSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP-------LGTDYPVNSVILLPKN---------------- 404 (508)
T ss_pred cccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC-------CCCcccceeEEEcCCC----------------
Confidence 99999999999999999999999999999977544322222 1244578888777754
Q ss_pred CcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCC
Q 000270 472 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD 551 (1749)
Q Consensus 472 ~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPD 551 (1749)
+..+++|....+|.|.++...- .+.+. .+ ....+...++++||.
T Consensus 405 ---------peh~iVCNrsntv~imn~qGQv--------Vrsfs-------------SG------kREgGdFi~~~lSpk 448 (508)
T KOG0275|consen 405 ---------PEHFIVCNRSNTVYIMNMQGQV--------VRSFS-------------SG------KREGGDFINAILSPK 448 (508)
T ss_pred ---------CceEEEEcCCCeEEEEeccceE--------Eeeec-------------cC------CccCCceEEEEecCC
Confidence 4789999999999999876311 00000 00 112344667889999
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 000270 552 NRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1749)
Q Consensus 552 G~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWD 611 (1749)
|.++.+.+.|+.++.|.+.+|++-+++.-|...|..++-|| ...+|++-+.||.+++|.
T Consensus 449 GewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHP-HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 449 GEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHP-HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCc-ccchhhhhcccchhhhcC
Confidence 99999999999999999999999999999999999999999 678999999999999995
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-28 Score=274.69 Aligned_cols=280 Identities=26% Similarity=0.436 Sum_probs=241.3
Q ss_pred EEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEE
Q 000270 278 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW 357 (1749)
Q Consensus 278 l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIW 357 (1749)
++++.+|...|++++|+|++++|++++.||.|++|++.++.....+..|...+..+.|++++. .|++++.+|.|.+|
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~~~~~~~~i~i~ 78 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT---YLASGSSDKTIRLW 78 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCC---EEEEEcCCCeEEEE
Confidence 356779999999999999999999999999999999999988888999999999999999986 89999999999999
Q ss_pred EcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCccee
Q 000270 358 DARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID 437 (1749)
Q Consensus 358 Dl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~ 437 (1749)
++..++....+ ..+...|.+++|++++.++++++.+|.|++|++.+ .....
T Consensus 79 ~~~~~~~~~~~--------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~~ 129 (289)
T cd00200 79 DLETGECVRTL--------------------TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET---------GKCLT 129 (289)
T ss_pred EcCcccceEEE--------------------eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC---------cEEEE
Confidence 99876544443 23556799999999999999888899999999964 33456
Q ss_pred eecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccC
Q 000270 438 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLK 517 (1749)
Q Consensus 438 ~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~ 517 (1749)
.+..|...|.+++|++++ .++++++.||.|++||+.+.+
T Consensus 130 ~~~~~~~~i~~~~~~~~~--------------------------~~l~~~~~~~~i~i~d~~~~~--------------- 168 (289)
T cd00200 130 TLRGHTDWVNSVAFSPDG--------------------------TFVASSSQDGTIKLWDLRTGK--------------- 168 (289)
T ss_pred EeccCCCcEEEEEEcCcC--------------------------CEEEEEcCCCcEEEEEccccc---------------
Confidence 667899999999999875 678888789999999987533
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcE
Q 000270 518 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRI 597 (1749)
Q Consensus 518 v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rl 597 (1749)
....+..+...|.+++|+|+++.|++++.++.|++||+.+++.+..+.+|...|.+++|+| ++.+
T Consensus 169 --------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ 233 (289)
T cd00200 169 --------------CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYL 233 (289)
T ss_pred --------------cceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcC-CCcE
Confidence 2233345667899999999999999999999999999999999999989999999999999 5788
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEeee--------eccCCCEEEEEcCCCeEEEEE
Q 000270 598 AMSAGYDGKTIVWDIWEGIPIRIYEIS--------RFRDGASIILSDDVGQLYILN 645 (1749)
Q Consensus 598 LaSgs~DGtIrVWDl~tGk~l~tl~~~--------~~sDG~~LAsgd~DG~I~IWd 645 (1749)
+++++.||.|++|++.+++.+..+..+ +.+++.+|++++.||.|.+|+
T Consensus 234 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 234 LASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 888888999999999999888877643 233889999999999999995
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-29 Score=283.64 Aligned_cols=282 Identities=21% Similarity=0.344 Sum_probs=251.3
Q ss_pred eEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEE
Q 000270 276 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355 (1749)
Q Consensus 276 ~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIr 355 (1749)
.+...+.+|...|+.+-|+|+-.++|+++.|++|++||..+|++...++||+..|..|+|+..|. +|++++.|-.+.
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk---~l~tcSsDl~~~ 175 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGK---YLATCSSDLSAK 175 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCcc---EEEecCCccchh
Confidence 45667788999999999999999999999999999999999999999999999999999999987 999999999999
Q ss_pred EEEcCCC-cccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCc
Q 000270 356 IWDARYS-QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNH 434 (1749)
Q Consensus 356 IWDl~tg-~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~ 434 (1749)
+||..+. +++.. ..+|...|.+++|-|-|.+|++++.|.+|+.|++.+ +.
T Consensus 176 LWd~~~~~~c~ks--------------------~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~t---------g~ 226 (406)
T KOG0295|consen 176 LWDFDTFFRCIKS--------------------LIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDT---------GY 226 (406)
T ss_pred heeHHHHHHHHHH--------------------hcCcccceeeEEEEecCCeeeecccccceeEEeccc---------ce
Confidence 9998763 22222 246888899999999999999999999999999976 67
Q ss_pred ceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCcccccccccc
Q 000270 435 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 514 (1749)
Q Consensus 435 ~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~ 514 (1749)
++.++.+|...|..++...+| .++++++.|.+|++|-+.++.
T Consensus 227 cv~t~~~h~ewvr~v~v~~DG--------------------------ti~As~s~dqtl~vW~~~t~~------------ 268 (406)
T KOG0295|consen 227 CVKTFPGHSEWVRMVRVNQDG--------------------------TIIASCSNDQTLRVWVVATKQ------------ 268 (406)
T ss_pred eEEeccCchHhEEEEEecCCe--------------------------eEEEecCCCceEEEEEeccch------------
Confidence 899999999999999999988 799999999999999887642
Q ss_pred ccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcC---------------CCCEEEEEeCCCeEEEEECCCCceEEEec
Q 000270 515 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL---------------DNRFVLAAIMDCRICVWNAADGSLVHSLT 579 (1749)
Q Consensus 515 ~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSP---------------DG~~LATGs~DGtI~VWDl~tgklv~tL~ 579 (1749)
+...+..|...|.+++|-| .|.++++++.|++|++||+.+|.++.+|.
T Consensus 269 -----------------~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ 331 (406)
T KOG0295|consen 269 -----------------CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV 331 (406)
T ss_pred -----------------hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe
Confidence 3445667888888888876 24699999999999999999999999999
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEeee-e------cc-CCCEEEEEcCCCeEEEEE
Q 000270 580 GHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS-R------FR-DGASIILSDDVGQLYILN 645 (1749)
Q Consensus 580 gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~-~------~s-DG~~LAsgd~DG~I~IWd 645 (1749)
||...|..++|+| +|++|+|+.+|++++|||+.+++++.++..+ + |. +-.++++|+-|..+.+|.
T Consensus 332 ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 332 GHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred cccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 9999999999999 9999999999999999999999999998864 1 12 666999999999999996
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.5e-28 Score=290.36 Aligned_cols=397 Identities=16% Similarity=0.255 Sum_probs=295.3
Q ss_pred CccccccceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCC
Q 000270 227 STMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND 306 (1749)
Q Consensus 227 ~~~~~~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~D 306 (1749)
.+........-+|.||..+|+++.|+..|..||+||.|+.|.|||+-...-+..++||...|+.+-|..+.++|++.|.|
T Consensus 91 if~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKD 170 (888)
T KOG0306|consen 91 IFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKD 170 (888)
T ss_pred eeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccC
Confidence 34444447788999999999999999999999999999999999999888899999999999999999988999999999
Q ss_pred CeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCC------------------------
Q 000270 307 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS------------------------ 362 (1749)
Q Consensus 307 GtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg------------------------ 362 (1749)
+.|++||+.+..|..+.-.|.+.|+++++.++ .+++++.|+.+++|++...
T Consensus 171 s~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~-----~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~ 245 (888)
T KOG0306|consen 171 SMIKFWDLETQHCFETHVDHRGEIWALVLDEK-----LLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKG 245 (888)
T ss_pred ceEEEEecccceeeeEEecccceEEEEEEecc-----eEEEEecCCceEEEEeecccccccccccceeeccceeeeccCC
Confidence 99999999999999999999999999999983 7899999999999998210
Q ss_pred cccceee--------cCCC-----------------------------CC------ccc---------------------
Q 000270 363 QFSPRIY--------IPRP-----------------------------SD------AVA--------------------- 378 (1749)
Q Consensus 363 ~~l~~l~--------~~~~-----------------------------~~------~~~--------------------- 378 (1749)
+.+.... +... .. .+.
T Consensus 246 R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks 325 (888)
T KOG0306|consen 246 REINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKS 325 (888)
T ss_pred ceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeE
Confidence 0000000 0000 00 000
Q ss_pred ------CCCC-------------------CC---------CCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Q 000270 379 ------GRNM-------------------AP---------SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKP 424 (1749)
Q Consensus 379 ------g~~~-------------------~~---------~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~ 424 (1749)
+... .. .....+|...|.+++||.+...+++|+ .+.|+||+..+.
T Consensus 326 ~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~ 404 (888)
T KOG0306|consen 326 FDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTL 404 (888)
T ss_pred EEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCc
Confidence 0000 00 023456778899999998887777664 678999998765
Q ss_pred CCCCCCC-------------------------------CCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCc
Q 000270 425 NTDDSDQ-------------------------------PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1749)
Q Consensus 425 ~~~~s~~-------------------------------~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~ 473 (1749)
++..... ....+....+|.+.|++++.+|++
T Consensus 405 kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~------------------ 466 (888)
T KOG0306|consen 405 KCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDN------------------ 466 (888)
T ss_pred ceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCC------------------
Confidence 4321110 011122335667777777777665
Q ss_pred ccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCC
Q 000270 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 553 (1749)
Q Consensus 474 ~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~ 553 (1749)
..+++||.|.+|++||..--.. ++.... ... .-...+...-...|.|+.+||||+
T Consensus 467 --------~g~vT~saDktVkfWdf~l~~~--------------~~gt~~--k~l-sl~~~rtLel~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 467 --------KGFVTGSADKTVKFWDFKLVVS--------------VPGTQK--KVL-SLKHTRTLELEDDVLCVSVSPDGK 521 (888)
T ss_pred --------CceEEecCCcEEEEEeEEEEec--------------cCcccc--eee-eeccceEEeccccEEEEEEcCCCc
Confidence 7899999999999999763110 000000 000 000112333456799999999999
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeee--------
Q 000270 554 FVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISR-------- 625 (1749)
Q Consensus 554 ~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~~-------- 625 (1749)
+||++--|++|+||-+.+-+....|-||.-+|.++..+| ++.+++|||.|.+|+||-+.=|.|-+.+.+|.
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F 600 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQF 600 (888)
T ss_pred EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEE
Confidence 999999999999999999999999999999999999999 88999999999999999999999998887652
Q ss_pred ccCCCEEEEEcCCCeEEEEECCCCccccccc------ceeeecCCCcceeEcCC
Q 000270 626 FRDGASIILSDDVGQLYILNTGQGESQKDAK------YDQFFLGDYRPLVQDTY 673 (1749)
Q Consensus 626 ~sDG~~LAsgd~DG~I~IWdl~tGe~~k~~~------~~~fFs~D~r~Lv~d~~ 673 (1749)
.|....+.+++.||.|+-||-..-+.++.+. +.+..+|+|..++..++
T Consensus 601 ~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~sh 654 (888)
T KOG0306|consen 601 LPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSH 654 (888)
T ss_pred cccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccC
Confidence 3477788899999999999865555444433 23455566555554443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=283.92 Aligned_cols=274 Identities=21% Similarity=0.330 Sum_probs=238.2
Q ss_pred ccccCCCcchhhhhccccCCCccccccceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCC
Q 000270 207 FTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEG 286 (1749)
Q Consensus 207 ~~~~~~~~~l~~~~~~~a~p~~~~~~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~ 286 (1749)
+..|+..|.+.++.|......|.+++...++.+.--.-+|.++.|-+-.+++++|++|..|+||+..|++.++.|.+|..
T Consensus 19 Vd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~D 98 (794)
T KOG0276|consen 19 VDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSD 98 (794)
T ss_pred eecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeecccc
Confidence 45677788888888988888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCcEEEEEeCCCeEEEEECCCC-ceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCccc
Q 000270 287 DITDLAVSSNNALVASASNDCIIRVWRLPDG-LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS 365 (1749)
Q Consensus 287 ~VtsLafSPDg~lLASGS~DGtIrVWDl~tg-k~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l 365 (1749)
-|.+|+.+|...+++|+|.|-+|++||++.+ .+.+++.||...|.+|+|.|... ..+|+++-|++|+||.+....+.
T Consensus 99 yIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~--ntFaS~sLDrTVKVWslgs~~~n 176 (794)
T KOG0276|consen 99 YIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP--NTFASASLDRTVKVWSLGSPHPN 176 (794)
T ss_pred ceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc--cceeeeeccccEEEEEcCCCCCc
Confidence 9999999999999999999999999999865 78889999999999999999765 48999999999999999776655
Q ss_pred ceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCC--CEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCC
Q 000270 366 PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG--TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE 443 (1749)
Q Consensus 366 ~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG--~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~ 443 (1749)
.++ .+|...|+|+.|-+.| .+|++|+.|.+|+|||..+ ..++.++.||.
T Consensus 177 fTl--------------------~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt---------k~CV~TLeGHt 227 (794)
T KOG0276|consen 177 FTL--------------------EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT---------KSCVQTLEGHT 227 (794)
T ss_pred eee--------------------eccccCcceEEeccCCCcceEEecCCCceEEEeecch---------HHHHHHhhccc
Confidence 444 4788899999998865 5999999999999999954 67899999999
Q ss_pred CCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCC
Q 000270 444 NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPM 523 (1749)
Q Consensus 444 ~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~ 523 (1749)
..|..+.|+|.- ..|++|+.||+++||+..+-+..
T Consensus 228 ~Nvs~v~fhp~l--------------------------piiisgsEDGTvriWhs~Ty~lE------------------- 262 (794)
T KOG0276|consen 228 NNVSFVFFHPEL--------------------------PIIISGSEDGTVRIWNSKTYKLE------------------- 262 (794)
T ss_pred ccceEEEecCCC--------------------------cEEEEecCCccEEEecCcceehh-------------------
Confidence 999999999975 69999999999999987763321
Q ss_pred CCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEE
Q 000270 524 PPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICV 566 (1749)
Q Consensus 524 ~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~V 566 (1749)
..+.-.-..|+||+-.+.++.|++|...|.|.|
T Consensus 263 ----------~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 263 ----------KTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred ----------hhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 122223346777877777777777776665543
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-28 Score=293.14 Aligned_cols=342 Identities=22% Similarity=0.283 Sum_probs=264.0
Q ss_pred cccccCCCcchhhhhccccCCCccccccceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCC
Q 000270 206 GFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHE 285 (1749)
Q Consensus 206 ~~~~~~~~~~l~~~~~~~a~p~~~~~~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs 285 (1749)
++++|+..|.+.++..+..+..|.+.-..++.+|.+|.++|..|+|+|++.++++|++|..|+||+..+.+++.+|.||-
T Consensus 14 glsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHl 93 (1202)
T KOG0292|consen 14 GLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHL 93 (1202)
T ss_pred ceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcccc
Confidence 34567778888888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCccc
Q 000270 286 GDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS 365 (1749)
Q Consensus 286 ~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l 365 (1749)
.-|..+.|++.-.+|+|+|.|.+|+||++.++++++++.||...|.|..|+|... +++++|-|.+|+|||+..-+..
T Consensus 94 DYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED---lIVSaSLDQTVRVWDisGLRkk 170 (1202)
T KOG0292|consen 94 DYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED---LIVSASLDQTVRVWDISGLRKK 170 (1202)
T ss_pred ceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccc---eEEEecccceEEEEeecchhcc
Confidence 9999999999999999999999999999999999999999999999999999776 8999999999999998643321
Q ss_pred ceeecCCCC--------CcccC-CCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcce
Q 000270 366 PRIYIPRPS--------DAVAG-RNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 436 (1749)
Q Consensus 366 ~~l~~~~~~--------~~~~g-~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i 436 (1749)
..-...... ....| ..........+|...|+.++|+|.-.+|++|+.|..|++|.+...+ .-.+
T Consensus 171 ~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK-------aWEv 243 (1202)
T KOG0292|consen 171 NKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-------AWEV 243 (1202)
T ss_pred CCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc-------ceee
Confidence 111000000 00001 1112234567899999999999999999999999999999985422 3356
Q ss_pred eeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCcccccccccccc
Q 000270 437 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 516 (1749)
Q Consensus 437 ~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l 516 (1749)
.+..+|.+.|.++-|+|.. ++|++.|.|++|+|||+..++..
T Consensus 244 DtcrgH~nnVssvlfhp~q--------------------------~lIlSnsEDksirVwDm~kRt~v------------ 285 (1202)
T KOG0292|consen 244 DTCRGHYNNVSSVLFHPHQ--------------------------DLILSNSEDKSIRVWDMTKRTSV------------ 285 (1202)
T ss_pred hhhhcccCCcceEEecCcc--------------------------ceeEecCCCccEEEEecccccce------------
Confidence 7789999999999999975 79999999999999999875533
Q ss_pred CCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeC--------------------------CCeEEEEECC
Q 000270 517 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM--------------------------DCRICVWNAA 570 (1749)
Q Consensus 517 ~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~--------------------------DGtI~VWDl~ 570 (1749)
+.+.-.....+.++-+|..+++|+|-. |..|+-+|+.
T Consensus 286 -----------------~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~ 348 (1202)
T KOG0292|consen 286 -----------------QTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLR 348 (1202)
T ss_pred -----------------eeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEccceEEeeecc
Confidence 222233344555666666555554432 3344444554
Q ss_pred CCce--EEEecCC---CCCeEEEEEcCCCCcEEEEEeCCC-cEEEEeC
Q 000270 571 DGSL--VHSLTGH---TESTYVLDVHPFNPRIAMSAGYDG-KTIVWDI 612 (1749)
Q Consensus 571 tgkl--v~tL~gH---~~~VtsLafSPdd~rlLaSgs~DG-tIrVWDl 612 (1749)
+.+- +..+... ..++.++.++|..+.+|++...|+ ..-++.+
T Consensus 349 t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~i 396 (1202)
T KOG0292|consen 349 TQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQI 396 (1202)
T ss_pred ccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEe
Confidence 4322 2233322 357889999997777776655443 3444444
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=258.56 Aligned_cols=287 Identities=20% Similarity=0.300 Sum_probs=242.1
Q ss_pred ceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEE
Q 000270 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1749)
Q Consensus 234 ~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWD 313 (1749)
+.++.|.+|.++|.++.|+-||+|.+|++.|.+|++|+...|.+++++.+|...|.+++.+.|+..|++|+.|..|.+||
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCC
Q 000270 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1749)
Q Consensus 314 l~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~ 393 (1749)
+.+|+.++.+.+|.+.|+.++|..+.. .+++|+.|.+|++||.+.....+.. .......
T Consensus 88 V~TGkv~Rr~rgH~aqVNtV~fNeesS---Vv~SgsfD~s~r~wDCRS~s~ePiQ------------------ildea~D 146 (307)
T KOG0316|consen 88 VNTGKVDRRFRGHLAQVNTVRFNEESS---VVASGSFDSSVRLWDCRSRSFEPIQ------------------ILDEAKD 146 (307)
T ss_pred cccCeeeeecccccceeeEEEecCcce---EEEeccccceeEEEEcccCCCCccc------------------hhhhhcC
Confidence 999999999999999999999999876 8999999999999999876543322 1233455
Q ss_pred ceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCc
Q 000270 394 QIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1749)
Q Consensus 394 ~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~ 473 (1749)
.|.++..+ +..|++|+.||+++.||++.+.. . ..-...+|++++|++++
T Consensus 147 ~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l---------~--sDy~g~pit~vs~s~d~------------------ 195 (307)
T KOG0316|consen 147 GVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTL---------S--SDYFGHPITSVSFSKDG------------------ 195 (307)
T ss_pred ceeEEEec--ccEEEeeccCCcEEEEEeeccee---------e--hhhcCCcceeEEecCCC------------------
Confidence 68888775 55799999999999999986532 1 22345689999999998
Q ss_pred ccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCC--eeEEEEcCC
Q 000270 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRG--VNMIVWSLD 551 (1749)
Q Consensus 474 ~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~--VtsVafSPD 551 (1749)
+..+.++.|+++++.|-.+++. +..+.+|... -..++++..
T Consensus 196 --------nc~La~~l~stlrLlDk~tGkl-----------------------------L~sYkGhkn~eykldc~l~qs 238 (307)
T KOG0316|consen 196 --------NCSLASSLDSTLRLLDKETGKL-----------------------------LKSYKGHKNMEYKLDCCLNQS 238 (307)
T ss_pred --------CEEEEeeccceeeecccchhHH-----------------------------HHHhcccccceeeeeeeeccc
Confidence 7899999999999999887553 3334444433 345677788
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEecCCCCC-eEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 000270 552 NRFVLAAIMDCRICVWNAADGSLVHSLTGHTES-TYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1749)
Q Consensus 552 G~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~-VtsLafSPdd~rlLaSgs~DGtIrVWD 611 (1749)
...+++|+.||.|++||+.....+..+..|... |++|+++|.-..++.++ ++.+.+|-
T Consensus 239 dthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~--~~~~~~~~ 297 (307)
T KOG0316|consen 239 DTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT--GHGDLFWY 297 (307)
T ss_pred ceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec--CCceecee
Confidence 899999999999999999999999999988887 89999999766666433 45566774
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-29 Score=283.01 Aligned_cols=269 Identities=25% Similarity=0.423 Sum_probs=231.3
Q ss_pred CCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCc
Q 000270 284 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ 363 (1749)
Q Consensus 284 Hs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~ 363 (1749)
....|+|+.+ |...+++|..|.+|+|||..+..++..+.||++.|.|+.|... .+++|+.|.+|++||+.+++
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r-----viisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER-----VIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccce-----EEEecCCCceEEEEeccCCc
Confidence 3567999988 4567999999999999999999999999999999999999763 89999999999999999999
Q ss_pred ccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCC
Q 000270 364 FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE 443 (1749)
Q Consensus 364 ~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~ 443 (1749)
++.++. .|...|..+.|+. .++++++.|.+|.+||+..+. ...+...+.||.
T Consensus 269 ~l~tli--------------------hHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps------~it~rrVLvGHr 320 (499)
T KOG0281|consen 269 PLNTLI--------------------HHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPT------DITLRRVLVGHR 320 (499)
T ss_pred hhhHHh--------------------hhcceeEEEEEeC--CEEEEecCCceeEEEeccCch------HHHHHHHHhhhh
Confidence 887763 5788899999974 489999999999999997543 355667889999
Q ss_pred CCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCC
Q 000270 444 NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPM 523 (1749)
Q Consensus 444 ~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~ 523 (1749)
..|+.|.|+. ++|++++.|.+|++|++.+.
T Consensus 321 AaVNvVdfd~----------------------------kyIVsASgDRTikvW~~st~---------------------- 350 (499)
T KOG0281|consen 321 AAVNVVDFDD----------------------------KYIVSASGDRTIKVWSTSTC---------------------- 350 (499)
T ss_pred hheeeecccc----------------------------ceEEEecCCceEEEEeccce----------------------
Confidence 9999999974 69999999999999999873
Q ss_pred CCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeC
Q 000270 524 PPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGY 603 (1749)
Q Consensus 524 ~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~ 603 (1749)
..+.++.+|..+|.|+.+ .|+++++|+.|.+|++||+..|.+++.+.||..-|.++.| +...++||+.
T Consensus 351 -------efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF---d~krIVSGaY 418 (499)
T KOG0281|consen 351 -------EFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAY 418 (499)
T ss_pred -------eeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee---cCceeeeccc
Confidence 456677889999988877 7899999999999999999999999999999999999999 4567889999
Q ss_pred CCcEEEEeCCCCceEE---------EEeee---ecc---CCCEEEEEcCCCeEEEEECCCC
Q 000270 604 DGKTIVWDIWEGIPIR---------IYEIS---RFR---DGASIILSDDVGQLYILNTGQG 649 (1749)
Q Consensus 604 DGtIrVWDl~tGk~l~---------tl~~~---~~s---DG~~LAsgd~DG~I~IWdl~tG 649 (1749)
||+|+|||+.++..-+ ++..+ .|. |...+++++.|.+|.|||+..|
T Consensus 419 DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 419 DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred cceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCC
Confidence 9999999998765332 22111 122 8888999999999999998655
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=289.79 Aligned_cols=297 Identities=19% Similarity=0.322 Sum_probs=259.3
Q ss_pred EEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCC
Q 000270 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPD 316 (1749)
Q Consensus 237 ~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~t 316 (1749)
-.+.||+..|.+++||.+...+++|+. +.|+||+..++++++++.. +.+.+..|.|.++++++|...|.+.|+|+.+
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 457899999999999999988888764 6899999999999999974 4899999999999999999999999999999
Q ss_pred CceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcc-----cceeecCCCCCcccCCCCCCCCCCCCC
Q 000270 317 GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF-----SPRIYIPRPSDAVAGRNMAPSSSAGPQ 391 (1749)
Q Consensus 317 gk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~-----l~~l~~~~~~~~~~g~~~~~~~s~~~h 391 (1749)
...+-+++.|.+.|+.++.+||+. .+++|+.|.+|++||..--.. ...+.+. ....-.-
T Consensus 444 ~~l~Eti~AHdgaIWsi~~~pD~~---g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~-------------~~rtLel 507 (888)
T KOG0306|consen 444 ASLVETIRAHDGAIWSISLSPDNK---GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLK-------------HTRTLEL 507 (888)
T ss_pred hhhhhhhhccccceeeeeecCCCC---ceEEecCCcEEEEEeEEEEeccCcccceeeeec-------------cceEEec
Confidence 999999999999999999999998 799999999999999742111 0101100 0001123
Q ss_pred CCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCC
Q 000270 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDST 471 (1749)
Q Consensus 392 ~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~ 471 (1749)
...|.|+++||||++||++--|.+|+||-+.+ .+....+.||.-+|.|+..+|++
T Consensus 508 ~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt---------lKFflsLYGHkLPV~smDIS~DS---------------- 562 (888)
T KOG0306|consen 508 EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT---------LKFFLSLYGHKLPVLSMDISPDS---------------- 562 (888)
T ss_pred cccEEEEEEcCCCcEEEEEeccCeEEEEEecc---------eeeeeeecccccceeEEeccCCc----------------
Confidence 56799999999999999999999999999966 55677899999999999999998
Q ss_pred CcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCC
Q 000270 472 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD 551 (1749)
Q Consensus 472 ~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPD 551 (1749)
..++|||.|..|++|-+.- |.+.+.+.+|...|.++.|-|.
T Consensus 563 ----------klivTgSADKnVKiWGLdF-----------------------------GDCHKS~fAHdDSvm~V~F~P~ 603 (888)
T KOG0306|consen 563 ----------KLIVTGSADKNVKIWGLDF-----------------------------GDCHKSFFAHDDSVMSVQFLPK 603 (888)
T ss_pred ----------CeEEeccCCCceEEecccc-----------------------------chhhhhhhcccCceeEEEEccc
Confidence 8999999999999997763 5566778899999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCce
Q 000270 552 NRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIP 617 (1749)
Q Consensus 552 G~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~ 617 (1749)
..++++++.|+.|+-||....++++++.+|...|++++.+| +|.+++|+|.|..|++|.......
T Consensus 604 ~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~-~G~~vvs~shD~sIRlwE~tde~~ 668 (888)
T KOG0306|consen 604 THLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSP-NGSFVVSSSHDKSIRLWERTDEIL 668 (888)
T ss_pred ceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcC-CCCeEEeccCCceeEeeeccCcce
Confidence 99999999999999999999999999999999999999999 888999999999999999755443
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-29 Score=284.16 Aligned_cols=276 Identities=19% Similarity=0.287 Sum_probs=240.6
Q ss_pred CCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCc
Q 000270 284 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ 363 (1749)
Q Consensus 284 Hs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~ 363 (1749)
-...|..|.|.|+|+.|++|+..|.+.+|+..+-..-..++.|..+|.++.|++++. ++++|+.+|.|++|+..-..
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~---wmiSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGT---WMISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCC---EEEEcCCCceEEecccchhh
Confidence 356899999999999999999999999999755444455678999999999999997 99999999999999976443
Q ss_pred ccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCC
Q 000270 364 FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE 443 (1749)
Q Consensus 364 ~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~ 443 (1749)
.. .+ ...|...|++++|+|+...|++++.||+|+|||... .+....+.+|.
T Consensus 172 Vk-~~-------------------~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~---------~kee~vL~GHg 222 (464)
T KOG0284|consen 172 VK-II-------------------QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM---------PKEERVLRGHG 222 (464)
T ss_pred hH-Hh-------------------hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC---------CchhheeccCC
Confidence 21 11 134558899999999999999999999999999965 33456679999
Q ss_pred CCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCC
Q 000270 444 NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPM 523 (1749)
Q Consensus 444 ~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~ 523 (1749)
-.|.++.|+|.. ..|+++|.|..|++||.++
T Consensus 223 wdVksvdWHP~k--------------------------gLiasgskDnlVKlWDprS----------------------- 253 (464)
T KOG0284|consen 223 WDVKSVDWHPTK--------------------------GLIASGSKDNLVKLWDPRS----------------------- 253 (464)
T ss_pred CCcceeccCCcc--------------------------ceeEEccCCceeEeecCCC-----------------------
Confidence 999999999976 6999999999999999997
Q ss_pred CCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeC
Q 000270 524 PPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGY 603 (1749)
Q Consensus 524 ~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~ 603 (1749)
+.++.++..|...|..+.|++++.+|++++.|..+++||+++.+.+.++++|...|++++|||....+|++||.
T Consensus 254 ------g~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~ 327 (464)
T KOG0284|consen 254 ------GSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGS 327 (464)
T ss_pred ------cchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccC
Confidence 44566778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCceEEEEe---------eeeccCCCEEEEEcCCCeEEEEEC
Q 000270 604 DGKTIVWDIWEGIPIRIYE---------ISRFRDGASIILSDDVGQLYILNT 646 (1749)
Q Consensus 604 DGtIrVWDl~tGk~l~tl~---------~~~~sDG~~LAsgd~DG~I~IWdl 646 (1749)
||.|..|.+...+++..+. ..+.+=|.+||+|+.|..+++|.-
T Consensus 328 Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 328 DGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred CCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 9999999998666655443 345668999999999999999975
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-27 Score=293.30 Aligned_cols=283 Identities=26% Similarity=0.418 Sum_probs=240.9
Q ss_pred EEEEcc-CCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCc--eEEEecCCCCceEEEEeccCCCcceEEEeecCCCcE
Q 000270 278 LASCRG-HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL--PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354 (1749)
Q Consensus 278 l~tL~g-Hs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk--~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtI 354 (1749)
...+.+ |...|+++.|+++|++|++++.++.|++|++.++. .+..+.+|...|.+++|+|++. ++++++.|++|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~---~l~s~s~D~ti 227 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGS---YLLSGSDDKTL 227 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCc---EEEEecCCceE
Confidence 334444 47889999999999999999999999999997777 7778889999999999999998 99999999999
Q ss_pred EEEEcC-CCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCC
Q 000270 355 RIWDAR-YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN 433 (1749)
Q Consensus 355 rIWDl~-tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~ 433 (1749)
+|||+. .+..+..+ .+|...|++++|+|+|+++++|+.|++|+|||+.+ .
T Consensus 228 riwd~~~~~~~~~~l--------------------~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~---------~ 278 (456)
T KOG0266|consen 228 RIWDLKDDGRNLKTL--------------------KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT---------G 278 (456)
T ss_pred EEeeccCCCeEEEEe--------------------cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC---------C
Confidence 999994 33554444 47899999999999999999999999999999976 5
Q ss_pred cceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccc
Q 000270 434 HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQA 513 (1749)
Q Consensus 434 ~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~ 513 (1749)
.++..+.+|.+.|.+++|++++ ..|++++.||.|+|||+.++...
T Consensus 279 ~~~~~l~~hs~~is~~~f~~d~--------------------------~~l~s~s~d~~i~vwd~~~~~~~--------- 323 (456)
T KOG0266|consen 279 ECVRKLKGHSDGISGLAFSPDG--------------------------NLLVSASYDGTIRVWDLETGSKL--------- 323 (456)
T ss_pred eEEEeeeccCCceEEEEECCCC--------------------------CEEEEcCCCccEEEEECCCCcee---------
Confidence 6788999999999999999998 89999999999999999875411
Q ss_pred cccCCCCCCCCCCCCCCCCcccccCCCC--CeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCe---EEE
Q 000270 514 YHLKVPPPPMPPQPPRGGPRQRILPTPR--GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTEST---YVL 588 (1749)
Q Consensus 514 ~~l~v~~~~~~~~~~~g~~i~~l~~h~~--~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~V---tsL 588 (1749)
+...+..+.. .+++++|+|++.+|++++.|+.+++||+..+.++..+.+|...+ ++.
T Consensus 324 ------------------~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~ 385 (456)
T KOG0266|consen 324 ------------------CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSP 385 (456)
T ss_pred ------------------eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecc
Confidence 1122223333 58999999999999999999999999999999999999998753 344
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEeee-ec--------cCCCEEEEEc--CCCeEEEEEC
Q 000270 589 DVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS-RF--------RDGASIILSD--DVGQLYILNT 646 (1749)
Q Consensus 589 afSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~-~~--------sDG~~LAsgd--~DG~I~IWdl 646 (1749)
..++ ++.++++|+.|+.|.+|++.++..+..+.++ .. +...++++++ .|+.|++|..
T Consensus 386 ~~~~-~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 386 TLST-GGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred cccC-CCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 4455 7889999999999999999999888888766 22 2778888887 6889999975
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-26 Score=305.68 Aligned_cols=295 Identities=16% Similarity=0.295 Sum_probs=236.7
Q ss_pred CcEEEEEECCCCeEEEEE-----ccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCC----c----eEEEecCCCCce
Q 000270 264 DRLVKIWSMETAYCLASC-----RGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG----L----PISVLRGHTAAV 330 (1749)
Q Consensus 264 DGtVrIWDl~Tg~~l~tL-----~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tg----k----~l~tL~gHs~~V 330 (1749)
+|.+++|+..+......+ ..|.+.|++++|+|++++||+|+.|+.|+||++.+. . ++..+. +...|
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 788999998876655443 358999999999999999999999999999997542 1 223333 34679
Q ss_pred EEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcC-CCCEEEE
Q 000270 331 TAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTVFVT 409 (1749)
Q Consensus 331 tsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSP-DG~~LaS 409 (1749)
.+++|++... .+|++++.||+|++||+.+++.+..+ ..|...|++++|+| ++.+|++
T Consensus 536 ~~l~~~~~~~--~~las~~~Dg~v~lWd~~~~~~~~~~--------------------~~H~~~V~~l~~~p~~~~~L~S 593 (793)
T PLN00181 536 SGICWNSYIK--SQVASSNFEGVVQVWDVARSQLVTEM--------------------KEHEKRVWSIDYSSADPTLLAS 593 (793)
T ss_pred eeEEeccCCC--CEEEEEeCCCeEEEEECCCCeEEEEe--------------------cCCCCCEEEEEEcCCCCCEEEE
Confidence 9999998643 28999999999999999887655443 35788899999997 7899999
Q ss_pred ecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeC
Q 000270 410 GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR 489 (1749)
Q Consensus 410 Gs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~ 489 (1749)
|+.||+|++||+.++ ..+..+..+ ..|.++.|.+.. +..|++|+.
T Consensus 594 gs~Dg~v~iWd~~~~---------~~~~~~~~~-~~v~~v~~~~~~-------------------------g~~latgs~ 638 (793)
T PLN00181 594 GSDDGSVKLWSINQG---------VSIGTIKTK-ANICCVQFPSES-------------------------GRSLAFGSA 638 (793)
T ss_pred EcCCCEEEEEECCCC---------cEEEEEecC-CCeEEEEEeCCC-------------------------CCEEEEEeC
Confidence 999999999999653 334455544 578999996532 279999999
Q ss_pred CCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 000270 490 DGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 569 (1749)
Q Consensus 490 DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl 569 (1749)
||.|++||+++.. .+...+.+|...|+++.|. ++.+|++++.|++|+|||+
T Consensus 639 dg~I~iwD~~~~~----------------------------~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~ 689 (793)
T PLN00181 639 DHKVYYYDLRNPK----------------------------LPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDL 689 (793)
T ss_pred CCeEEEEECCCCC----------------------------ccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeC
Confidence 9999999987522 1223455788899999997 7889999999999999999
Q ss_pred CC------CceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEe---------------------
Q 000270 570 AD------GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE--------------------- 622 (1749)
Q Consensus 570 ~t------gklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~--------------------- 622 (1749)
.. +.++.++.+|...+..++|+| ++.+|++|+.||.|+||+...+.++..+.
T Consensus 690 ~~~~~~~~~~~l~~~~gh~~~i~~v~~s~-~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~ 768 (793)
T PLN00181 690 SMSISGINETPLHSFMGHTNVKNFVGLSV-SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISS 768 (793)
T ss_pred CCCccccCCcceEEEcCCCCCeeEEEEcC-CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEE
Confidence 74 367889999999999999999 56799999999999999987665443321
Q ss_pred eeeccCCCEEEEEcCCCeEEEEEC
Q 000270 623 ISRFRDGASIILSDDVGQLYILNT 646 (1749)
Q Consensus 623 ~~~~sDG~~LAsgd~DG~I~IWdl 646 (1749)
..+.++|..|++++.+|.|.||++
T Consensus 769 v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 769 VCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEcCCCCeEEEecCCCcEEEEec
Confidence 123458999999999999999986
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=289.49 Aligned_cols=287 Identities=25% Similarity=0.467 Sum_probs=252.9
Q ss_pred EEEcc-CCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEE-EccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEEC
Q 000270 237 KRVRG-HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS-CRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314 (1749)
Q Consensus 237 ~tL~G-H~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~t-L~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl 314 (1749)
+.+.+ |...|.|..|. +.++++++.|.+|++|+..++..+.. +.||.+.|.+++|..-+.+|++|+.|.+++|||+
T Consensus 201 ~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~ 278 (537)
T KOG0274|consen 201 KVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDC 278 (537)
T ss_pred eeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEec
Confidence 44554 56788999998 55899999999999999999999988 9999999999999887889999999999999999
Q ss_pred CCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCc
Q 000270 315 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1749)
Q Consensus 315 ~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~ 394 (1749)
.+|.++.++.+|...|.++...+. .+++|+.|.+|++|++.++.++..+ .+|.+.
T Consensus 279 ~sg~C~~~l~gh~stv~~~~~~~~-----~~~sgs~D~tVkVW~v~n~~~l~l~--------------------~~h~~~ 333 (537)
T KOG0274|consen 279 STGECTHSLQGHTSSVRCLTIDPF-----LLVSGSRDNTVKVWDVTNGACLNLL--------------------RGHTGP 333 (537)
T ss_pred CCCcEEEEecCCCceEEEEEccCc-----eEeeccCCceEEEEeccCcceEEEe--------------------cccccc
Confidence 999999999999999999998874 7888999999999999998877765 348899
Q ss_pred eEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcc
Q 000270 395 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 474 (1749)
Q Consensus 395 Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~ 474 (1749)
|.|+.++ +.++++|+.|++|+||++.+ .+++..+.+|...|+++.+.+.
T Consensus 334 V~~v~~~--~~~lvsgs~d~~v~VW~~~~---------~~cl~sl~gH~~~V~sl~~~~~-------------------- 382 (537)
T KOG0274|consen 334 VNCVQLD--EPLLVSGSYDGTVKVWDPRT---------GKCLKSLSGHTGRVYSLIVDSE-------------------- 382 (537)
T ss_pred EEEEEec--CCEEEEEecCceEEEEEhhh---------ceeeeeecCCcceEEEEEecCc--------------------
Confidence 9999997 78999999999999999975 6789999999999999988753
Q ss_pred cccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCE
Q 000270 475 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRF 554 (1749)
Q Consensus 475 ~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~ 554 (1749)
..+++|+.|++|++||+.+.. .++..+.+|..-+..+.+ .+++
T Consensus 383 -------~~~~Sgs~D~~IkvWdl~~~~----------------------------~c~~tl~~h~~~v~~l~~--~~~~ 425 (537)
T KOG0274|consen 383 -------NRLLSGSLDTTIKVWDLRTKR----------------------------KCIHTLQGHTSLVSSLLL--RDNF 425 (537)
T ss_pred -------ceEEeeeeccceEeecCCchh----------------------------hhhhhhcCCccccccccc--ccce
Confidence 489999999999999998631 345566677777755544 6889
Q ss_pred EEEEeCCCeEEEEECCCCceEEEecC-CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceEEEE
Q 000270 555 VLAAIMDCRICVWNAADGSLVHSLTG-HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIY 621 (1749)
Q Consensus 555 LATGs~DGtI~VWDl~tgklv~tL~g-H~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl 621 (1749)
|++++.|++|++||..++++++++.+ |...|+++++. ...+++++.||++++||+.++++++.+
T Consensus 426 Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 426 LVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred eEeccccccEEEeecccCceeeeeccCCcccEEEeecC---cceEEEEecCCeeEEEecccCchhhhh
Confidence 99999999999999999999999999 77889999885 356778999999999999999998876
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-26 Score=249.73 Aligned_cols=284 Identities=20% Similarity=0.290 Sum_probs=231.4
Q ss_pred eEEEEEccCCCCeEEEEEcCC-CcEEEEEeCCCeEEEEECCCC---ceEEEe-cCCCCceEEEEeccCCCcceEEEeecC
Q 000270 276 YCLASCRGHEGDITDLAVSSN-NALVASASNDCIIRVWRLPDG---LPISVL-RGHTAAVTAIAFSPRPGSVYQLLSSSD 350 (1749)
Q Consensus 276 ~~l~tL~gHs~~VtsLafSPD-g~lLASGS~DGtIrVWDl~tg---k~l~tL-~gHs~~VtsIaFSPdg~~~~~LaSgS~ 350 (1749)
..++.+.+|.+.|..++|+|- |.+||+|+.|..|+||+...+ .+..++ .+|...|..++|+|.++ +|++|+.
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~---~La~aSF 81 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR---YLASASF 81 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc---EEEEeec
Confidence 356788999999999999998 899999999999999998753 444445 47999999999999998 9999999
Q ss_pred CCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCC
Q 000270 351 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD 430 (1749)
Q Consensus 351 DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~ 430 (1749)
|.++.||.-..+.+... ....+|...|.|++|+++|.+||+++.|..|-||.+.. .
T Consensus 82 D~t~~Iw~k~~~efecv------------------~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~de------d 137 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECV------------------ATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDE------D 137 (312)
T ss_pred cceEEEeecCCCceeEE------------------eeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecC------C
Confidence 99999998665543322 22367899999999999999999999999999999853 2
Q ss_pred CCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCcccccc
Q 000270 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1749)
Q Consensus 431 ~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~ 510 (1749)
....++..+.+|...|..+.|+|.. ++|++++.|.+|++|.-...
T Consensus 138 dEfec~aVL~~HtqDVK~V~WHPt~--------------------------dlL~S~SYDnTIk~~~~~~d--------- 182 (312)
T KOG0645|consen 138 DEFECIAVLQEHTQDVKHVIWHPTE--------------------------DLLFSCSYDNTIKVYRDEDD--------- 182 (312)
T ss_pred CcEEEEeeeccccccccEEEEcCCc--------------------------ceeEEeccCCeEEEEeecCC---------
Confidence 3456788999999999999999976 79999999999999965421
Q ss_pred ccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCCCeEEEE
Q 000270 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT-GHTESTYVLD 589 (1749)
Q Consensus 511 ~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~-gH~~~VtsLa 589 (1749)
..-.+.+++.+|...|.+++|++.|..|++++.|++|+||-..+ .+. -|...++.++
T Consensus 183 -----------------ddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~~~~sr~~Y~v~ 240 (312)
T KOG0645|consen 183 -----------------DDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLSGMHSRALYDVP 240 (312)
T ss_pred -----------------CCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc-----CcchhcccceEeee
Confidence 11234567788989999999999999999999999999998652 222 3778999999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEe---------------eeecc-CCCEEEEEcCCCeEEEEEC
Q 000270 590 VHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE---------------ISRFR-DGASIILSDDVGQLYILNT 646 (1749)
Q Consensus 590 fSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~---------------~~~~s-DG~~LAsgd~DG~I~IWdl 646 (1749)
|. ..+|+|++.|+.|+|+.-..+-.-..+. ..+.+ -.++|+++++||.|.+|.+
T Consensus 241 W~---~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 241 WD---NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred ec---ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEe
Confidence 96 4588999999999999765431111111 11233 4789999999999999986
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-27 Score=278.38 Aligned_cols=282 Identities=19% Similarity=0.312 Sum_probs=241.4
Q ss_pred eEEEEEccCCCCeEEEEEcC-CCcEEEEEeCCCeEEEEECCC-CceEEEecCCCCceEEEEeccCCCcceEEEeecCCCc
Q 000270 276 YCLASCRGHEGDITDLAVSS-NNALVASASNDCIIRVWRLPD-GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGT 353 (1749)
Q Consensus 276 ~~l~tL~gHs~~VtsLafSP-Dg~lLASGS~DGtIrVWDl~t-gk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGt 353 (1749)
+.+.++.||+..|+++.|.| .+.+|++++.|+.|+||++-+ +.+++++.+|..+|.+++|+.++. .|++++.|+.
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~---~fLS~sfD~~ 281 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGT---SFLSASFDRF 281 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCC---eeeeeeccee
Confidence 56788999999999999999 899999999999999999876 899999999999999999999997 8999999999
Q ss_pred EEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCC-CEEEEecCCCcEEEEeCCCCCCCCCCCC
Q 000270 354 CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQP 432 (1749)
Q Consensus 354 IrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG-~~LaSGs~DGtVrIWDl~t~~~~~s~~~ 432 (1749)
|++||+++|+++..+.. ...++|+.|.|++ +.|++|+.|+.|+.||+++
T Consensus 282 lKlwDtETG~~~~~f~~---------------------~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs--------- 331 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHL---------------------DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS--------- 331 (503)
T ss_pred eeeeccccceEEEEEec---------------------CCCceeeecCCCCCcEEEEecCCCcEEEEeccc---------
Confidence 99999999999888753 3458899999998 8999999999999999987
Q ss_pred CcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCcccccccc
Q 000270 433 NHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQ 512 (1749)
Q Consensus 433 ~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~ 512 (1749)
+..+..+..|-+.|..|.|-+.+ ..+++.+.|++++||+....-.+..
T Consensus 332 ~kvvqeYd~hLg~i~~i~F~~~g--------------------------~rFissSDdks~riWe~~~~v~ik~------ 379 (503)
T KOG0282|consen 332 GKVVQEYDRHLGAILDITFVDEG--------------------------RRFISSSDDKSVRIWENRIPVPIKN------ 379 (503)
T ss_pred hHHHHHHHhhhhheeeeEEccCC--------------------------ceEeeeccCccEEEEEcCCCccchh------
Confidence 44677788899999999999987 7999999999999999875321110
Q ss_pred ccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC---ceEEEecCCC--CCeEE
Q 000270 513 AYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG---SLVHSLTGHT--ESTYV 587 (1749)
Q Consensus 513 ~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tg---klv~tL~gH~--~~Vts 587 (1749)
........+.+|+.+|++.++++-+.|+.|.||.+... .....+.||. +.-..
T Consensus 380 ----------------------i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~ 437 (503)
T KOG0282|consen 380 ----------------------IADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQ 437 (503)
T ss_pred ----------------------hcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceee
Confidence 11112234678999999999999999999999997543 2334678885 44567
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEeee--------ecc-CCCEEEEEcCCCeEEEEE
Q 000270 588 LDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS--------RFR-DGASIILSDDVGQLYILN 645 (1749)
Q Consensus 588 LafSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~--------~~s-DG~~LAsgd~DG~I~IWd 645 (1749)
+.||| |+++|++|+.||.+.+||..+-+++..+.++ +++ ....||+++.+|.|+||+
T Consensus 438 v~fSp-DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 438 VDFSP-DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEEcC-CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 89999 8899999999999999999999988888766 333 677899999999999996
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=265.05 Aligned_cols=285 Identities=20% Similarity=0.283 Sum_probs=239.4
Q ss_pred eEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCC---ceEEEecCCCCceEEEEeccCCCcceEEEeecCCC
Q 000270 276 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG---LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG 352 (1749)
Q Consensus 276 ~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tg---k~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DG 352 (1749)
+..+.+..|+..|+-+.||++|++||+++.|.+..+|.+... +...++.+|..+|..|.|+||.. +|++++.|.
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr---yLlaCg~~e 291 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR---YLLACGFDE 291 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC---eEEecCchH
Confidence 345667889999999999999999999999999999987654 34778899999999999999987 999999999
Q ss_pred cEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCC
Q 000270 353 TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQP 432 (1749)
Q Consensus 353 tIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~ 432 (1749)
.+.+||+.+|.+...+. .++...+.+++|.|||..|++|+.|++|..||+..
T Consensus 292 ~~~lwDv~tgd~~~~y~-------------------~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg--------- 343 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYP-------------------SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG--------- 343 (519)
T ss_pred heeeccCCcchhhhhcc-------------------cCcCCCcceeEEccCCceeEecCCCCcEEEecCCc---------
Confidence 99999999998665542 12456799999999999999999999999999953
Q ss_pred CcceeeecCCC-CCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccc
Q 000270 433 NHEIDVLSGHE-NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 511 (1749)
Q Consensus 433 ~~~i~~l~gH~-~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~ 511 (1749)
..+....+-. ..|.+++.+++| ..+++.+.|..|++++..+....
T Consensus 344 -n~~~~W~gvr~~~v~dlait~Dg--------------------------k~vl~v~~d~~i~l~~~e~~~dr------- 389 (519)
T KOG0293|consen 344 -NILGNWEGVRDPKVHDLAITYDG--------------------------KYVLLVTVDKKIRLYNREARVDR------- 389 (519)
T ss_pred -chhhcccccccceeEEEEEcCCC--------------------------cEEEEEecccceeeechhhhhhh-------
Confidence 2233333333 468999999988 78888889999999987753211
Q ss_pred cccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCC--eEEEE
Q 000270 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTES--TYVLD 589 (1749)
Q Consensus 512 ~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~--VtsLa 589 (1749)
.+.....+|+++++|.||+++++.-.+..|++||+...++++.+.||... |..-+
T Consensus 390 -----------------------~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSC 446 (519)
T KOG0293|consen 390 -----------------------GLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSC 446 (519)
T ss_pred -----------------------ccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEec
Confidence 13345568999999999999999999999999999999999999999764 44456
Q ss_pred EcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeee--------cc-CCCEEEEEcCCCeEEEEECCC
Q 000270 590 VHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISR--------FR-DGASIILSDDVGQLYILNTGQ 648 (1749)
Q Consensus 590 fSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~~--------~s-DG~~LAsgd~DG~I~IWdl~t 648 (1749)
|--.+..+++||+.|+.|+||+..+|+++.++.+|. .| |..++|++++||+|+||..+.
T Consensus 447 Fgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 447 FGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 665555899999999999999999999999999863 22 889999999999999999753
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=246.95 Aligned_cols=293 Identities=19% Similarity=0.256 Sum_probs=235.4
Q ss_pred EEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCC
Q 000270 238 RVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG 317 (1749)
Q Consensus 238 tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tg 317 (1749)
.|+||..+++.|.|+.+|.+|++++.|.++.||-..+|+.+.++.||++.|+|++.+-+.++|++|+.|.+++|||+.+|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecCCCCceEEEEeccCCCcceEEEee-----cCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000270 318 LPISVLRGHTAAVTAIAFSPRPGSVYQLLSS-----SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1749)
Q Consensus 318 k~l~tL~gHs~~VtsIaFSPdg~~~~~LaSg-----S~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~ 392 (1749)
+++..++ ...+|..+.|+++++ +++.. +.-+.|.++|++..... +. ...+......+.
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn---~~l~~tD~~mg~~~~v~~fdi~~~~~~--~~-----------s~ep~~kI~t~~ 147 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGN---LILASTDKQMGYTCFVSVFDIRDDSSD--ID-----------SEEPYLKIPTPD 147 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCc---EEEEEehhhcCcceEEEEEEccCChhh--hc-----------ccCceEEecCCc
Confidence 9999987 667899999999986 44433 23467999998743210 00 000011112344
Q ss_pred CceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCC
Q 000270 393 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472 (1749)
Q Consensus 393 ~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~ 472 (1749)
..++.+-|.|-+.+|++|..+|.|.+||++++. ..+.....|...|+.++++++.
T Consensus 148 skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~--------~~v~s~~~h~~~Ind~q~s~d~----------------- 202 (327)
T KOG0643|consen 148 SKITSALWGPLGETIIAGHEDGSISIYDARTGK--------ELVDSDEEHSSKINDLQFSRDR----------------- 202 (327)
T ss_pred cceeeeeecccCCEEEEecCCCcEEEEEcccCc--------eeeechhhhccccccccccCCc-----------------
Confidence 678999999999999999999999999998742 3455667899999999999987
Q ss_pred cccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCC
Q 000270 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN 552 (1749)
Q Consensus 473 ~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG 552 (1749)
.++++++.|.+.++||+.+-..+ .......+|++.+++|-.
T Consensus 203 ---------T~FiT~s~Dttakl~D~~tl~v~------------------------------Kty~te~PvN~aaisP~~ 243 (327)
T KOG0643|consen 203 ---------TYFITGSKDTTAKLVDVRTLEVL------------------------------KTYTTERPVNTAAISPLL 243 (327)
T ss_pred ---------ceEEecccCccceeeeccceeeE------------------------------EEeeecccccceeccccc
Confidence 79999999999999999874322 112245689999999988
Q ss_pred CEEEEEeCCCeEEE--EECCCC------------ceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 000270 553 RFVLAAIMDCRICV--WNAADG------------SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1749)
Q Consensus 553 ~~LATGs~DGtI~V--WDl~tg------------klv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl 612 (1749)
.+++.|+.....-| =..+.| +.+..++||.++|++|+||| ++...+|||.||.|+|.-.
T Consensus 244 d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP-dGksYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 244 DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP-DGKSYSSGGEDGYVRLHHF 316 (327)
T ss_pred ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC-CCcccccCCCCceEEEEEe
Confidence 88887764332222 112223 33556789999999999999 7778889999999999754
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=255.63 Aligned_cols=288 Identities=22% Similarity=0.363 Sum_probs=239.1
Q ss_pred cCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCC
Q 000270 283 GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 362 (1749)
Q Consensus 283 gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg 362 (1749)
.|...|.++... ++.|++|+.||.++|||. .|+.+..+.||+++|.+++|.-.......|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 388999999887 789999999999999996 68999999999999998888765543347999999999999998876
Q ss_pred cccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCC----------------
Q 000270 363 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNT---------------- 426 (1749)
Q Consensus 363 ~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~---------------- 426 (1749)
....... ....+|...|-+++..++|..+++|+.|.+|.||+..+...
T Consensus 180 ~~~~~~~----------------~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~ 243 (423)
T KOG0313|consen 180 ENKVKAL----------------KVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKR 243 (423)
T ss_pred hhhhhHH----------------hHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhh
Confidence 5433221 12247999999999999999999999999999999422111
Q ss_pred CCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCcc
Q 000270 427 DDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPK 506 (1749)
Q Consensus 427 ~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~ 506 (1749)
........++..+.||..+|.+|.|++. ..+++++-|.+|+.||+.++....
T Consensus 244 ~~~~~~r~P~vtl~GHt~~Vs~V~w~d~---------------------------~v~yS~SwDHTIk~WDletg~~~~- 295 (423)
T KOG0313|consen 244 EKEGGTRTPLVTLEGHTEPVSSVVWSDA---------------------------TVIYSVSWDHTIKVWDLETGGLKS- 295 (423)
T ss_pred hhcccccCceEEecccccceeeEEEcCC---------------------------CceEeecccceEEEEEeeccccee-
Confidence 1122334567789999999999999984 589999999999999999754221
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc---eEEEecCCCC
Q 000270 507 AARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGS---LVHSLTGHTE 583 (1749)
Q Consensus 507 ~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgk---lv~tL~gH~~ 583 (1749)
.......++++.++|..++||+|+.|..|++||.+++. ..++|.||.+
T Consensus 296 -----------------------------~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n 346 (423)
T KOG0313|consen 296 -----------------------------TLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN 346 (423)
T ss_pred -----------------------------eeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchh
Confidence 11234578999999999999999999999999998753 4568999999
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc-eEEEEeeeec-------cCCCEEEEEcCCCeEEEEEC
Q 000270 584 STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI-PIRIYEISRF-------RDGASIILSDDVGQLYILNT 646 (1749)
Q Consensus 584 ~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk-~l~tl~~~~~-------sDG~~LAsgd~DG~I~IWdl 646 (1749)
.|.++.|+|.+..+|++|+.|+++++||+++.+ ++..+.+|.- .+|..|++|+.|.+|+|+..
T Consensus 347 wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 347 WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred hhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceEEEecc
Confidence 999999999999999999999999999999887 8888876632 28899999999999999975
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.5e-26 Score=258.13 Aligned_cols=299 Identities=21% Similarity=0.356 Sum_probs=239.8
Q ss_pred CCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCC---cEEEEEeCCCeEEEEECCCCc
Q 000270 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNN---ALVASASNDCIIRVWRLPDGL 318 (1749)
Q Consensus 242 H~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg---~lLASGS~DGtIrVWDl~tgk 318 (1749)
|.+.|.+|... +++|+||++||+++|||.. |+...++.||.++|.+++|.--+ ..|++++.|.++++|-++.+.
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~ 180 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE 180 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence 78888888887 7899999999999999987 89999999999999999886533 369999999999999988774
Q ss_pred ----eEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCC------CCcccCCCCCCCCCC
Q 000270 319 ----PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP------SDAVAGRNMAPSSSA 388 (1749)
Q Consensus 319 ----~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~------~~~~~g~~~~~~~s~ 388 (1749)
.+....||...|-+|...+++. .+++|+.|.+|.||+..+.. ...+.-... .....+....+....
T Consensus 181 ~~~~~~~~~~GHk~~V~sVsv~~sgt---r~~SgS~D~~lkiWs~~~~~-~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl 256 (423)
T KOG0313|consen 181 NKVKALKVCRGHKRSVDSVSVDSSGT---RFCSGSWDTMLKIWSVETDE-EDELESSSNRRRKKQKREKEGGTRTPLVTL 256 (423)
T ss_pred hhhhHHhHhcccccceeEEEecCCCC---eEEeecccceeeecccCCCc-cccccccchhhhhhhhhhhcccccCceEEe
Confidence 3344569999999999999987 89999999999999933211 111100000 000113334455667
Q ss_pred CCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCC
Q 000270 389 GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 468 (1749)
Q Consensus 389 ~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~ 468 (1749)
.+|...|.++.|++ ...+++++.|++|+.||+.++. .+..+. -...+++|.++|..
T Consensus 257 ~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~---------~~~~~~-~~ksl~~i~~~~~~------------- 312 (423)
T KOG0313|consen 257 EGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG---------LKSTLT-TNKSLNCISYSPLS------------- 312 (423)
T ss_pred cccccceeeEEEcC-CCceEeecccceEEEEEeeccc---------ceeeee-cCcceeEeeccccc-------------
Confidence 89999999999998 5689999999999999997643 222222 24567888888865
Q ss_pred CCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEE
Q 000270 469 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 548 (1749)
Q Consensus 469 ~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVaf 548 (1749)
++|++|+.|..|++||++++. ..-..+.+.+|...|.++.|
T Consensus 313 -------------~Ll~~gssdr~irl~DPR~~~--------------------------gs~v~~s~~gH~nwVssvkw 353 (423)
T KOG0313|consen 313 -------------KLLASGSSDRHIRLWDPRTGD--------------------------GSVVSQSLIGHKNWVSSVKW 353 (423)
T ss_pred -------------ceeeecCCCCceeecCCCCCC--------------------------CceeEEeeecchhhhhheec
Confidence 799999999999999999743 11234578899999999999
Q ss_pred cCCCC-EEEEEeCCCeEEEEECCCCc-eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 000270 549 SLDNR-FVLAAIMDCRICVWNAADGS-LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1749)
Q Consensus 549 SPDG~-~LATGs~DGtI~VWDl~tgk-lv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl 612 (1749)
+|... .|++|+.|+++++||+++.+ ++..+.+|.+.|.++.|.. +.+++|||.|.+|+|+.-
T Consensus 354 sp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~--~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 354 SPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE--GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred CCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC--CceEEeccCcceEEEecc
Confidence 99775 57789999999999999887 9999999999999999975 668899999999999864
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=241.33 Aligned_cols=257 Identities=21% Similarity=0.360 Sum_probs=225.6
Q ss_pred EEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEE
Q 000270 277 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356 (1749)
Q Consensus 277 ~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrI 356 (1749)
.+..+.+|.++|..+.|+-||+|.++++.|.+|++|+...|.+++++.+|...|..++.+.|+. .|++|+.|..|.+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dns---kf~s~GgDk~v~v 85 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNS---KFASCGGDKAVQV 85 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccccc---ccccCCCCceEEE
Confidence 4567889999999999999999999999999999999999999999999999999999999987 8999999999999
Q ss_pred EEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcce
Q 000270 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 436 (1749)
Q Consensus 357 WDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i 436 (1749)
||+.+|+...++ .+|.++|+.+.|+.+...+++|+.|..+++||-++.. ..++
T Consensus 86 wDV~TGkv~Rr~--------------------rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s-------~ePi 138 (307)
T KOG0316|consen 86 WDVNTGKVDRRF--------------------RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS-------FEPI 138 (307)
T ss_pred EEcccCeeeeec--------------------ccccceeeEEEecCcceEEEeccccceeEEEEcccCC-------CCcc
Confidence 999999988776 5799999999999999999999999999999997632 4567
Q ss_pred eeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCcccccccccccc
Q 000270 437 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 516 (1749)
Q Consensus 437 ~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l 516 (1749)
+.+....+.|.+|.... ..|++|+.||+++.||++.++..
T Consensus 139 Qildea~D~V~Si~v~~----------------------------heIvaGS~DGtvRtydiR~G~l~------------ 178 (307)
T KOG0316|consen 139 QILDEAKDGVSSIDVAE----------------------------HEIVAGSVDGTVRTYDIRKGTLS------------ 178 (307)
T ss_pred chhhhhcCceeEEEecc----------------------------cEEEeeccCCcEEEEEeecceee------------
Confidence 77778888899888764 58999999999999999975421
Q ss_pred CCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEE--EEcCCC
Q 000270 517 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVL--DVHPFN 594 (1749)
Q Consensus 517 ~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsL--afSPdd 594 (1749)
... ...+|++++|++||+.+++++.|++|++.|-.+|+++..+.||...-+.+ ++.. .
T Consensus 179 -----------------sDy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~q-s 238 (307)
T KOG0316|consen 179 -----------------SDY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQ-S 238 (307)
T ss_pred -----------------hhh--cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecc-c
Confidence 111 23479999999999999999999999999999999999999998866555 4444 4
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceEEEEee
Q 000270 595 PRIAMSAGYDGKTIVWDIWEGIPIRIYEI 623 (1749)
Q Consensus 595 ~rlLaSgs~DGtIrVWDl~tGk~l~tl~~ 623 (1749)
...+++|+.||.|++||+..+..+..+..
T Consensus 239 dthV~sgSEDG~Vy~wdLvd~~~~sk~~~ 267 (307)
T KOG0316|consen 239 DTHVFSGSEDGKVYFWDLVDETQISKLSV 267 (307)
T ss_pred ceeEEeccCCceEEEEEeccceeeeeecc
Confidence 46889999999999999999888877653
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-26 Score=249.14 Aligned_cols=292 Identities=20% Similarity=0.318 Sum_probs=251.9
Q ss_pred EEEEccCCCCEEEEEECC---CCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEE
Q 000270 236 IKRVRGHRNAVYCAIFDR---SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1749)
Q Consensus 236 i~tL~GH~~~Vt~VaFSP---DG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVW 312 (1749)
-.+..||+.+|..++||| +|-+|++++.||.-.+-+-+||.-+.+|.||.+.|++.....+...-|+++.|-+.+||
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW 86 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence 356789999999999986 89999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000270 313 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1749)
Q Consensus 313 Dl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~ 392 (1749)
|.-+|..+..+. |...|.+++|+.|.. +|++|+.+..++|||+...+..+ ....+|.
T Consensus 87 ~a~tgdelhsf~-hkhivk~~af~~ds~---~lltgg~ekllrvfdln~p~App-------------------~E~~ght 143 (334)
T KOG0278|consen 87 DAVTGDELHSFE-HKHIVKAVAFSQDSN---YLLTGGQEKLLRVFDLNRPKAPP-------------------KEISGHT 143 (334)
T ss_pred hhhhhhhhhhhh-hhheeeeEEecccch---hhhccchHHHhhhhhccCCCCCc-------------------hhhcCCC
Confidence 999999998887 889999999999987 89999999999999987654222 2246788
Q ss_pred CceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCC
Q 000270 393 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472 (1749)
Q Consensus 393 ~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~ 472 (1749)
+.|..+.|....+.|++...|++||+||.+++. .+..+ ....+|+++.+++++
T Consensus 144 g~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt---------~v~sL-~~~s~VtSlEvs~dG----------------- 196 (334)
T KOG0278|consen 144 GGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT---------EVQSL-EFNSPVTSLEVSQDG----------------- 196 (334)
T ss_pred CcceeEEEeccCceEEeeccCCceEEEEeccCc---------EEEEE-ecCCCCcceeeccCC-----------------
Confidence 999999999988899998999999999998743 33333 345678899999886
Q ss_pred cccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCC
Q 000270 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN 552 (1749)
Q Consensus 473 ~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG 552 (1749)
.+++....+.|.+||..+-..+. -...+..|.+..++|+-
T Consensus 197 ----------~ilTia~gssV~Fwdaksf~~lK------------------------------s~k~P~nV~SASL~P~k 236 (334)
T KOG0278|consen 197 ----------RILTIAYGSSVKFWDAKSFGLLK------------------------------SYKMPCNVESASLHPKK 236 (334)
T ss_pred ----------CEEEEecCceeEEecccccccee------------------------------eccCccccccccccCCC
Confidence 67777888999999988633111 11234468899999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEe-cCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceE
Q 000270 553 RFVLAAIMDCRICVWNAADGSLVHSL-TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618 (1749)
Q Consensus 553 ~~LATGs~DGtI~VWDl~tgklv~tL-~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l 618 (1749)
.++++|+.|+.++.||..+|..+..+ .||.++|.+|.|+| ++.+.++|+.||+|+||.+.-++.-
T Consensus 237 ~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP-dGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 237 EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP-DGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECC-CCceeeccCCCceEEEEEecCCCch
Confidence 99999999999999999999999886 89999999999999 7788899999999999998776644
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=259.65 Aligned_cols=425 Identities=20% Similarity=0.233 Sum_probs=268.0
Q ss_pred cccceEEEEccCCCCEEEEEECCCCCEEEEEe--CCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeC--C
Q 000270 231 QKMQNIKRVRGHRNAVYCAIFDRSGRYVITGS--DDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN--D 306 (1749)
Q Consensus 231 ~~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS--~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~--D 306 (1749)
......+.+..|+.+++||+||++|+|+|||- ....++||++..-..+..|..|.-.|+|++|+|.++||++.+. |
T Consensus 66 ~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHD 145 (1080)
T KOG1408|consen 66 DSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHD 145 (1080)
T ss_pred cccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccc
Confidence 44455667788999999999999999999985 5678999999998899999999999999999999999997654 3
Q ss_pred CeEEEEECCCCceEEEecCCCCceEEEEeccCCC----------------------------------------------
Q 000270 307 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPG---------------------------------------------- 340 (1749)
Q Consensus 307 GtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~---------------------------------------------- 340 (1749)
-.|.+||++-......- .-...|..++|+.++.
T Consensus 146 MIVnv~dWr~N~~~asn-kiss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~ava 224 (1080)
T KOG1408|consen 146 MIVNVNDWRVNSSGASN-KISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVA 224 (1080)
T ss_pred eEEEhhhhhhccccccc-ccceeEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhh
Confidence 35556655321100000 0011122222222221
Q ss_pred --------------------------------------------cceEEEeecCCCcEEEEEcCCCcccceeecCCCCCc
Q 000270 341 --------------------------------------------SVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDA 376 (1749)
Q Consensus 341 --------------------------------------------~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~ 376 (1749)
...++++|+.+|.|++|+..+-....++..+.....
T Consensus 225 Cg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~ 304 (1080)
T KOG1408|consen 225 CGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGS 304 (1080)
T ss_pred hcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhcccccccccccc
Confidence 001677777778888877776655555432221111
Q ss_pred cc--CCCCCC--CCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEc
Q 000270 377 VA--GRNMAP--SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 452 (1749)
Q Consensus 377 ~~--g~~~~~--~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafS 452 (1749)
-. +....+ .....+.-....++.|++...+|.+...|..|+|||++..+. ......+.-|...|+.|.--
T Consensus 305 d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~k------vgk~~s~lyHS~ciW~Ve~~ 378 (1080)
T KOG1408|consen 305 DTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNK------VGKCSSMLYHSACIWDVENL 378 (1080)
T ss_pred chhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEecccccc------ccceeeeeeccceeeeeccc
Confidence 00 000000 001111122245778999999999999999999999976432 22344566788888888776
Q ss_pred CCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccc-cccccccCCCCCCCC-------
Q 000270 453 GCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR-WTQAYHLKVPPPPMP------- 524 (1749)
Q Consensus 453 pdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~-~~~~~~l~v~~~~~~------- 524 (1749)
|...-. -...-.....|++|+.||+|++|++........... ....-.++++.....
T Consensus 379 p~nv~~---------------~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~ 443 (1080)
T KOG1408|consen 379 PCNVHS---------------PTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDA 443 (1080)
T ss_pred cccccC---------------cccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhc
Confidence 643100 001112235699999999999999986221100000 000000011000000
Q ss_pred CCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC--------------------------------
Q 000270 525 PQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG-------------------------------- 572 (1749)
Q Consensus 525 ~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tg-------------------------------- 572 (1749)
....-............++.+++.||+|++||+|..-|.|+||++..-
T Consensus 444 ~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASas 523 (1080)
T KOG1408|consen 444 SAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASAS 523 (1080)
T ss_pred cCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhcc
Confidence 000011122233445567999999999999999999999999987531
Q ss_pred --ce------------EEEecCCCCCeEEEEEcCC---------------------------------------------
Q 000270 573 --SL------------VHSLTGHTESTYVLDVHPF--------------------------------------------- 593 (1749)
Q Consensus 573 --kl------------v~tL~gH~~~VtsLafSPd--------------------------------------------- 593 (1749)
++ ++++.+|...|++|.|...
T Consensus 524 rdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~ 603 (1080)
T KOG1408|consen 524 RDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMA 603 (1080)
T ss_pred CCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEee
Confidence 12 2334567666666665431
Q ss_pred ---CCcEEEEEeCCCcEEEEeCCCCceEEEEeeeec-----------cCCCEEEEEcCCCeEEEEECCCCcccc------
Q 000270 594 ---NPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF-----------RDGASIILSDDVGQLYILNTGQGESQK------ 653 (1749)
Q Consensus 594 ---d~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~~~-----------sDG~~LAsgd~DG~I~IWdl~tGe~~k------ 653 (1749)
...++++++.|..|+||++.+|+..++|.+.+. |.|-+||++..|.+|.++|+-+|+...
T Consensus 604 Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHs 683 (1080)
T KOG1408|consen 604 VDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHS 683 (1080)
T ss_pred eCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcc
Confidence 224567888999999999999999999876432 278889999999999999999998873
Q ss_pred cccceeeecCCCcceeEc-CCCcEE
Q 000270 654 DAKYDQFFLGDYRPLVQD-TYGNVL 677 (1749)
Q Consensus 654 ~~~~~~fFs~D~r~Lv~d-~~G~Vl 677 (1749)
.+...+.|.+|.+.|+.- .+|-+.
T Consensus 684 E~VTG~kF~nDCkHlISvsgDgCIF 708 (1080)
T KOG1408|consen 684 EAVTGVKFLNDCKHLISVSGDGCIF 708 (1080)
T ss_pred hheeeeeecccchhheeecCCceEE
Confidence 345567899999988654 444443
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=265.96 Aligned_cols=288 Identities=23% Similarity=0.320 Sum_probs=240.6
Q ss_pred EEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCe--EEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEE
Q 000270 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY--CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1749)
Q Consensus 236 i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~--~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWD 313 (1749)
...+..|.+.|..+.|-++...|+||+.|..|++|++..++ .+.+|.|..+.|+++.|.++++.+++++.|+.+++|+
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence 44578899999999999998899999999999999998766 7788889999999999999999999999999999999
Q ss_pred CCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCC
Q 000270 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1749)
Q Consensus 314 l~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~ 393 (1749)
+.+++...+|.||+..|+++.|.-... .+++|+.|.+|++||+....|..++.. ..
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~~---~vVsgs~DRtiK~WDl~k~~C~kt~l~---------------------~S 303 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSHS---RVVSGSADRTIKLWDLQKAYCSKTVLP---------------------GS 303 (459)
T ss_pred ccchhhhhhhcccccceeeehhhcccc---ceeeccccchhhhhhhhhhheeccccc---------------------cc
Confidence 999999999999999999999998764 599999999999999998877766532 23
Q ss_pred ceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCc
Q 000270 394 QIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1749)
Q Consensus 394 ~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~ 473 (1749)
.+..|+.+ +..+++|..|+.|++||++++ ........+. .|+++..++++
T Consensus 304 ~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~---------~~~~sv~~gg-~vtSl~ls~~g------------------ 353 (459)
T KOG0288|consen 304 QCNDIVCS--ISDVISGHFDKKVRFWDIRSA---------DKTRSVPLGG-RVTSLDLSMDG------------------ 353 (459)
T ss_pred cccceEec--ceeeeecccccceEEEeccCC---------ceeeEeecCc-ceeeEeeccCC------------------
Confidence 35555554 567899999999999999763 3444555554 89999999887
Q ss_pred ccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCC
Q 000270 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 553 (1749)
Q Consensus 474 ~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~ 553 (1749)
..|++++.|.++.+.|+++......... .-......++.++|||++.
T Consensus 354 --------~~lLsssRDdtl~viDlRt~eI~~~~sA-------------------------~g~k~asDwtrvvfSpd~~ 400 (459)
T KOG0288|consen 354 --------LELLSSSRDDTLKVIDLRTKEIRQTFSA-------------------------EGFKCASDWTRVVFSPDGS 400 (459)
T ss_pred --------eEEeeecCCCceeeeecccccEEEEeec-------------------------cccccccccceeEECCCCc
Confidence 6888889999999999997442111100 0011223489999999999
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCCC--CeEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 000270 554 FVLAAIMDCRICVWNAADGSLVHSLTGHTE--STYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1749)
Q Consensus 554 ~LATGs~DGtI~VWDl~tgklv~tL~gH~~--~VtsLafSPdd~rlLaSgs~DGtIrVWD 611 (1749)
|+|+|+.||.|+||++.+|++...+...+. .|++++|+| .+..|++++.++.+.+|.
T Consensus 401 YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 401 YVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP-SGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC-CCchhhcccCCcceEecC
Confidence 999999999999999999999998876554 499999999 677788999999999993
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-25 Score=260.16 Aligned_cols=302 Identities=22% Similarity=0.314 Sum_probs=233.8
Q ss_pred cceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCC----eEEEEEc-cCCCCeEEEEEcCCCcEEEEEeCCC
Q 000270 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA----YCLASCR-GHEGDITDLAVSSNNALVASASNDC 307 (1749)
Q Consensus 233 ~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg----~~l~tL~-gHs~~VtsLafSPDg~lLASGS~DG 307 (1749)
..+-..|.+|+..|.++++.|.|-+|+||+.|.+|++||+... +..+.|. .-...|.++.|++.|..|++.+...
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence 3455679999999999999999999999999999999999743 1222222 3455799999999999998888888
Q ss_pred eEEEEECCCCceE-------------EEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCC
Q 000270 308 IIRVWRLPDGLPI-------------SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS 374 (1749)
Q Consensus 308 tIrVWDl~tgk~l-------------~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~ 374 (1749)
.++|+|- .|..+ ..-+||...++|.+|+|+.+ ..|++++.||+++|||+...+....+..+.+
T Consensus 237 qakl~DR-dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k--~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~- 312 (641)
T KOG0772|consen 237 QAKLLDR-DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNK--EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP- 312 (641)
T ss_pred ceeEEcc-CCceeeeeeccchhhhhhhccCCceeeeeccccccCcc--cceEEecCCCcEEEEecCCchhheeEEeecc-
Confidence 9999995 34322 22358999999999999986 3799999999999999987654433332211
Q ss_pred CcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCC--CeEEEEEc
Q 000270 375 DAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN--DVNYVQFS 452 (1749)
Q Consensus 375 ~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~--~V~sVafS 452 (1749)
..+..-.++.|+|+++|.+||+|+.||.|.+|+..... . ...+..-.+|.. .|+||.|+
T Consensus 313 -------------~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~----v--~p~~~vk~AH~~g~~Itsi~FS 373 (641)
T KOG0772|consen 313 -------------AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRT----V--RPVMKVKDAHLPGQDITSISFS 373 (641)
T ss_pred -------------CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcc----c--ccceEeeeccCCCCceeEEEec
Confidence 12345568999999999999999999999999984321 1 223445567877 99999999
Q ss_pred CCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCC
Q 000270 453 GCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGP 532 (1749)
Q Consensus 453 pdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~ 532 (1749)
++| ++|++-+.|+++++||++..+....
T Consensus 374 ~dg--------------------------~~LlSRg~D~tLKvWDLrq~kkpL~-------------------------- 401 (641)
T KOG0772|consen 374 YDG--------------------------NYLLSRGFDDTLKVWDLRQFKKPLN-------------------------- 401 (641)
T ss_pred ccc--------------------------chhhhccCCCceeeeeccccccchh--------------------------
Confidence 998 8999999999999999996431100
Q ss_pred cccccCCCCCeeEEEEcCCCCEEEEEe------CCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 000270 533 RQRILPTPRGVNMIVWSLDNRFVLAAI------MDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGK 606 (1749)
Q Consensus 533 i~~l~~h~~~VtsVafSPDG~~LATGs------~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGt 606 (1749)
...-......-+.++|||+.++|++|+ ..|.+++||..+...+..+.-.+..|..+.|||-=++++ .++.||+
T Consensus 402 ~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~-~gsgdG~ 480 (641)
T KOG0772|consen 402 VRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIF-AGSGDGT 480 (641)
T ss_pred hhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhhee-eecCCCc
Confidence 000112233467799999999999986 357899999999999998887788999999999555555 5777899
Q ss_pred EEEE
Q 000270 607 TIVW 610 (1749)
Q Consensus 607 IrVW 610 (1749)
++|+
T Consensus 481 ~~vy 484 (641)
T KOG0772|consen 481 AHVY 484 (641)
T ss_pred eEEE
Confidence 9876
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-24 Score=242.55 Aligned_cols=296 Identities=20% Similarity=0.295 Sum_probs=242.7
Q ss_pred ccceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeC--CCeE
Q 000270 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN--DCII 309 (1749)
Q Consensus 232 ~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~--DGtI 309 (1749)
.++..+.|..-.+.|+++.|+++|.+|++++.|.+|+|||..+|+.++++..+.-.|..+.|......++.++. |.+|
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 45566677777889999999999999999999999999999999999999999899999999988777777776 8899
Q ss_pred EEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCC
Q 000270 310 RVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389 (1749)
Q Consensus 310 rVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~ 389 (1749)
+.-++.+.+.++.+.||...|++|+.+|-+. .+++++.|++|++||++..++...+..
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d---~FlS~S~D~tvrLWDlR~~~cqg~l~~------------------- 140 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDD---TFLSSSLDKTVRLWDLRVKKCQGLLNL------------------- 140 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCC---eEEecccCCeEEeeEecCCCCceEEec-------------------
Confidence 9999999999999999999999999999886 899999999999999998777655532
Q ss_pred CCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCC
Q 000270 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469 (1749)
Q Consensus 390 ~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~ 469 (1749)
..-..+||.|.|-+||++.....|++||++.-. ..|........+-....+.|.|+|+|
T Consensus 141 ---~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~d----kgPF~tf~i~~~~~~ew~~l~FS~dG-------------- 199 (311)
T KOG1446|consen 141 ---SGRPIAAFDPEGLIFALANGSELIKLYDLRSFD----KGPFTTFSITDNDEAEWTDLEFSPDG-------------- 199 (311)
T ss_pred ---CCCcceeECCCCcEEEEecCCCeEEEEEecccC----CCCceeEccCCCCccceeeeEEcCCC--------------
Confidence 123368999999999999888899999997632 12222222222456788999999998
Q ss_pred CCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCC---CCeeEE
Q 000270 470 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP---RGVNMI 546 (1749)
Q Consensus 470 ~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~---~~VtsV 546 (1749)
+.|+.+...+.+.+.|.-++..... +..+. .--...
T Consensus 200 ------------K~iLlsT~~s~~~~lDAf~G~~~~t-----------------------------fs~~~~~~~~~~~a 238 (311)
T KOG1446|consen 200 ------------KSILLSTNASFIYLLDAFDGTVKST-----------------------------FSGYPNAGNLPLSA 238 (311)
T ss_pred ------------CEEEEEeCCCcEEEEEccCCcEeee-----------------------------EeeccCCCCcceeE
Confidence 7899999999999998776542211 11111 112568
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 000270 547 VWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTG-HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1749)
Q Consensus 547 afSPDG~~LATGs~DGtI~VWDl~tgklv~tL~g-H~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~t 614 (1749)
+|+||+++|++|+.||+|++|++.+|..+..+.+ +.+++.++.|.| ++..-++.+..+.+|=...
T Consensus 239 ~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP---~~~mf~sa~s~l~fw~p~~ 304 (311)
T KOG1446|consen 239 TFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNP---RYAMFVSASSNLVFWLPDE 304 (311)
T ss_pred EECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCC---ceeeeeecCceEEEEeccc
Confidence 8999999999999999999999999999999999 789999999988 3344455677899996543
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=243.12 Aligned_cols=279 Identities=20% Similarity=0.282 Sum_probs=231.8
Q ss_pred EEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECC-CCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEE
Q 000270 278 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP-DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356 (1749)
Q Consensus 278 l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~-tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrI 356 (1749)
+..+.+|.+.|..+.|+|+|.+||||+.|..|.+|++- .-+-..++++|.+.|..+.|.+|+. .|++++.|.+|+.
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s---~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGS---HILSCGTDKTVRG 116 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCC---EEEEecCCceEEE
Confidence 34467999999999999999999999999999999953 3456778899999999999999998 8999999999999
Q ss_pred EEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCC-CEEEEecCCCcEEEEeCCCCCCCCCCCCCcc
Q 000270 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHE 435 (1749)
Q Consensus 357 WDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG-~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~ 435 (1749)
||+++|+++..+ ..|..-|+++.-+.-| .++.+|+.||+++|||+++.. .
T Consensus 117 wD~~tG~~~rk~--------------------k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~---------~ 167 (338)
T KOG0265|consen 117 WDAETGKRIRKH--------------------KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE---------A 167 (338)
T ss_pred Eecccceeeehh--------------------ccccceeeecCccccCCeEEEecCCCceEEEEeecccc---------h
Confidence 999999987765 4577778888744444 467789999999999998532 1
Q ss_pred eeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccc
Q 000270 436 IDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYH 515 (1749)
Q Consensus 436 i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~ 515 (1749)
+.+ ....-.++++.|...+ +.+++|+-|+.|++||++.
T Consensus 168 ~~t-~~~kyqltAv~f~d~s--------------------------~qv~sggIdn~ikvWd~r~--------------- 205 (338)
T KOG0265|consen 168 IKT-FENKYQLTAVGFKDTS--------------------------DQVISGGIDNDIKVWDLRK--------------- 205 (338)
T ss_pred hhc-cccceeEEEEEecccc--------------------------cceeeccccCceeeecccc---------------
Confidence 222 2234578899998776 7899999999999999985
Q ss_pred cCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCC----CceEEEecCCCC----CeEE
Q 000270 516 LKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD----GSLVHSLTGHTE----STYV 587 (1749)
Q Consensus 516 l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~t----gklv~tL~gH~~----~Vts 587 (1749)
......+.+|...|+.+..+++|.++.+-+.|.+|++||++- ..++..+.||.. ....
T Consensus 206 --------------~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~ 271 (338)
T KOG0265|consen 206 --------------NDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK 271 (338)
T ss_pred --------------CcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcce
Confidence 334566788999999999999999999999999999999964 346888888743 3467
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEeee--------eccCCCEEEEEcCCCeEEEEE
Q 000270 588 LDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS--------RFRDGASIILSDDVGQLYILN 645 (1749)
Q Consensus 588 LafSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~--------~~sDG~~LAsgd~DG~I~IWd 645 (1749)
++|+| +...+.+|+.|..+++||......+..+.++ +++...+|.+++.|.+|++=.
T Consensus 272 cswsp-~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 272 CSWSP-NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred eeccC-CCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 89999 7888889999999999999887888777765 344788999999999988743
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-24 Score=261.37 Aligned_cols=355 Identities=18% Similarity=0.229 Sum_probs=281.1
Q ss_pred CCccccccceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCc-EEEEEe
Q 000270 226 PSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA-LVASAS 304 (1749)
Q Consensus 226 p~~~~~~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~-lLASGS 304 (1749)
..|.+.+.+.+.+++++...|+++.=+|-=..+|.|..+|+|.|+++..++.+.+|+.-.+.|++++|..||. +||+|+
T Consensus 185 ql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~ 264 (910)
T KOG1539|consen 185 QLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR 264 (910)
T ss_pred EEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc
Confidence 4577888999999999999999999999999999999999999999999999999995569999999999987 567777
Q ss_pred CCCeEEEEECCCCceEEEec-CCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecC------------
Q 000270 305 NDCIIRVWRLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIP------------ 371 (1749)
Q Consensus 305 ~DGtIrVWDl~tgk~l~tL~-gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~------------ 371 (1749)
..|.+.+||++..+.+..+. .|.+.|+.+.|.|... .+++++.|..+++|=.+++.-.+++.-.
T Consensus 265 ~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep---Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~ir 341 (910)
T KOG1539|consen 265 SNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP---VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIR 341 (910)
T ss_pred CCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc---eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchhee
Confidence 77999999999888777765 7989999999999765 8999999999988855433221111000
Q ss_pred -----------CCCCc-c--------------------------c-----------------------------------
Q 000270 372 -----------RPSDA-V--------------------------A----------------------------------- 378 (1749)
Q Consensus 372 -----------~~~~~-~--------------------------~----------------------------------- 378 (1749)
...+. . .
T Consensus 342 fy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~ 421 (910)
T KOG1539|consen 342 FYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGK 421 (910)
T ss_pred eeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCc
Confidence 00000 0 0
Q ss_pred -------------CCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCC
Q 000270 379 -------------GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEND 445 (1749)
Q Consensus 379 -------------g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~ 445 (1749)
|...............+++++.++.|++.+.|+..|.|-+|++.++-. ......-..|...
T Consensus 422 ~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~------r~sf~~~~ah~~~ 495 (910)
T KOG1539|consen 422 RSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH------RKSFGDSPAHKGE 495 (910)
T ss_pred ceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCee------ecccccCccccCc
Confidence 000000001111235688999999999999999999999999965321 1111122589999
Q ss_pred eEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCC
Q 000270 446 VNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPP 525 (1749)
Q Consensus 446 V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~ 525 (1749)
|+.++..... +.+++++.+|.+.+||........
T Consensus 496 V~gla~D~~n--------------------------~~~vsa~~~Gilkfw~f~~k~l~~-------------------- 529 (910)
T KOG1539|consen 496 VTGLAVDGTN--------------------------RLLVSAGADGILKFWDFKKKVLKK-------------------- 529 (910)
T ss_pred eeEEEecCCC--------------------------ceEEEccCcceEEEEecCCcceee--------------------
Confidence 9999988654 789999999999999998633111
Q ss_pred CCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC
Q 000270 526 QPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDG 605 (1749)
Q Consensus 526 ~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DG 605 (1749)
-..-...++++..+.....+|++..|-.|.|+|+.+.+.++.|.||++.|++++||| ++++|++++.|+
T Consensus 530 ----------~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~-DgrWlisasmD~ 598 (910)
T KOG1539|consen 530 ----------SLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP-DGRWLISASMDS 598 (910)
T ss_pred ----------eeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC-CCcEEEEeecCC
Confidence 011234577888888889999999999999999999999999999999999999999 889999999999
Q ss_pred cEEEEeCCCCceEEEEeee-------eccCCCEEEEEcCC-CeEEEEEC
Q 000270 606 KTIVWDIWEGIPIRIYEIS-------RFRDGASIILSDDV-GQLYILNT 646 (1749)
Q Consensus 606 tIrVWDl~tGk~l~tl~~~-------~~sDG~~LAsgd~D-G~I~IWdl 646 (1749)
+|++||+.+|.++-.+... ..|+|.+||++..| ..|++|.-
T Consensus 599 tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 599 TIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred cEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 9999999999999877542 44599999999888 68999975
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-25 Score=274.76 Aligned_cols=263 Identities=19% Similarity=0.330 Sum_probs=202.3
Q ss_pred ccccceEEEEc-cCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCC--------------------------------C-
Q 000270 230 VQKMQNIKRVR-GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET--------------------------------A- 275 (1749)
Q Consensus 230 ~~~~~~i~tL~-GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~T--------------------------------g- 275 (1749)
+......+.+. +|.++|+|+.||+||+|||+||.||.|+||.+.. .
T Consensus 253 lsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~ 332 (712)
T KOG0283|consen 253 LSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKI 332 (712)
T ss_pred ceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccc
Confidence 33444556677 9999999999999999999999999999998754 0
Q ss_pred ---------------------------eEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCC
Q 000270 276 ---------------------------YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTA 328 (1749)
Q Consensus 276 ---------------------------~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~ 328 (1749)
+.++.|.||.+.|.+|.||.+ .+|+++|.|.+||||++....|+++|. |..
T Consensus 333 ~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-Hnd 410 (712)
T KOG0283|consen 333 SSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HND 410 (712)
T ss_pred cccccccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCC
Confidence 122346799999999999965 588999999999999999999999997 999
Q ss_pred ceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEE
Q 000270 329 AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFV 408 (1749)
Q Consensus 329 ~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~La 408 (1749)
.|+||+|+|-.. .+|++|+-||.|+||++...+.+.-. .-..-|++++|.|||+..+
T Consensus 411 fVTcVaFnPvDD--ryFiSGSLD~KvRiWsI~d~~Vv~W~---------------------Dl~~lITAvcy~PdGk~av 467 (712)
T KOG0283|consen 411 FVTCVAFNPVDD--RYFISGSLDGKVRLWSISDKKVVDWN---------------------DLRDLITAVCYSPDGKGAV 467 (712)
T ss_pred eeEEEEecccCC--CcEeecccccceEEeecCcCeeEeeh---------------------hhhhhheeEEeccCCceEE
Confidence 999999999765 49999999999999999876543322 1235699999999999999
Q ss_pred EecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEe
Q 000270 409 TGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCS 488 (1749)
Q Consensus 409 SGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS 488 (1749)
+|+.+|.+++|++...+.....+....-..-..|. .|+.++|.|.. .+.+++.+
T Consensus 468 IGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~-------------------------~~~vLVTS 521 (712)
T KOG0283|consen 468 IGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGD-------------------------PDEVLVTS 521 (712)
T ss_pred EEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCC-------------------------CCeEEEec
Confidence 99999999999986432211100000000011233 79999999865 25788889
Q ss_pred CCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCC--CCeeEEEEcCCCCEEEEEeCCCeEEE
Q 000270 489 RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP--RGVNMIVWSLDNRFVLAAIMDCRICV 566 (1749)
Q Consensus 489 ~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~--~~VtsVafSPDG~~LATGs~DGtI~V 566 (1749)
.|..|+|+|.++.... ..+.+.. ..-....|+.||++|++|+.|..|+|
T Consensus 522 nDSrIRI~d~~~~~lv-----------------------------~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYi 572 (712)
T KOG0283|consen 522 NDSRIRIYDGRDKDLV-----------------------------HKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYI 572 (712)
T ss_pred CCCceEEEeccchhhh-----------------------------hhhcccccCCcceeeeEccCCCEEEEeecCceEEE
Confidence 9999999999753322 2222221 22456789999999999999999999
Q ss_pred EECCCC
Q 000270 567 WNAADG 572 (1749)
Q Consensus 567 WDl~tg 572 (1749)
|+....
T Consensus 573 W~~~~~ 578 (712)
T KOG0283|consen 573 WKNDSF 578 (712)
T ss_pred EeCCCC
Confidence 998543
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-24 Score=235.75 Aligned_cols=277 Identities=19% Similarity=0.274 Sum_probs=234.5
Q ss_pred EEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEE--EccCCCCeEEEEEcC-CCcEEEEEeCCCeEEEEE
Q 000270 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS--CRGHEGDITDLAVSS-NNALVASASNDCIIRVWR 313 (1749)
Q Consensus 237 ~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~t--L~gHs~~VtsLafSP-Dg~lLASGS~DGtIrVWD 313 (1749)
+.+++|...|.+|+|+.+|..||+|+.|+++.||++..++.+.. .++|.+.|-.++|+| ...+|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 66889999999999999999999999999999999988765554 468999999999998 567999999999999999
Q ss_pred CCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCC
Q 000270 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1749)
Q Consensus 314 l~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~ 393 (1749)
+.+++++..+....+. .-+.|+|++. ++++++.|..|.+.|.++.+...... ...
T Consensus 94 ~r~~k~~~~i~~~~en-i~i~wsp~g~---~~~~~~kdD~it~id~r~~~~~~~~~---------------------~~~ 148 (313)
T KOG1407|consen 94 IRSGKCTARIETKGEN-INITWSPDGE---YIAVGNKDDRITFIDARTYKIVNEEQ---------------------FKF 148 (313)
T ss_pred eccCcEEEEeeccCcc-eEEEEcCCCC---EEEEecCcccEEEEEecccceeehhc---------------------ccc
Confidence 9999999988754444 4588999998 99999999999999998876544331 234
Q ss_pred ceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCc
Q 000270 394 QIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1749)
Q Consensus 394 ~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~ 473 (1749)
.+.-++|+-++.+|+.....|.|.|..... .+.+..+.+|.....||.|+|+|
T Consensus 149 e~ne~~w~~~nd~Fflt~GlG~v~ILsyps---------Lkpv~si~AH~snCicI~f~p~G------------------ 201 (313)
T KOG1407|consen 149 EVNEISWNNSNDLFFLTNGLGCVEILSYPS---------LKPVQSIKAHPSNCICIEFDPDG------------------ 201 (313)
T ss_pred eeeeeeecCCCCEEEEecCCceEEEEeccc---------cccccccccCCcceEEEEECCCC------------------
Confidence 577889988888777777789999988743 56788899999999999999998
Q ss_pred ccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCC
Q 000270 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 553 (1749)
Q Consensus 474 ~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~ 553 (1749)
++|++|+.|..+.+||+...- +...+.-+.-+|..+.||.||+
T Consensus 202 --------ryfA~GsADAlvSLWD~~ELi-----------------------------C~R~isRldwpVRTlSFS~dg~ 244 (313)
T KOG1407|consen 202 --------RYFATGSADALVSLWDVDELI-----------------------------CERCISRLDWPVRTLSFSHDGR 244 (313)
T ss_pred --------ceEeeccccceeeccChhHhh-----------------------------hheeeccccCceEEEEeccCcc
Confidence 899999999999999988522 2334455677899999999999
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCC
Q 000270 554 FVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYD 604 (1749)
Q Consensus 554 ~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~D 604 (1749)
+||+|+.|..|-|=++.+|..++.+. +.++.+.|+||| ...+||-++.|
T Consensus 245 ~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~dd 293 (313)
T KOG1407|consen 245 MLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDD 293 (313)
T ss_pred eeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecC
Confidence 99999999999999999999999886 677899999999 55566555544
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=258.35 Aligned_cols=425 Identities=18% Similarity=0.213 Sum_probs=310.9
Q ss_pred CEEEEEECCCC--CEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEE
Q 000270 245 AVYCAIFDRSG--RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISV 322 (1749)
Q Consensus 245 ~Vt~VaFSPDG--~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~t 322 (1749)
.|+++ ++|.- +.|+.|+..|.++||++.+++.+.+++++...|+++.-+|-=..+|.|..+|+|.|++++.++.+.+
T Consensus 161 ~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~s 239 (910)
T KOG1539|consen 161 FITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMS 239 (910)
T ss_pred ceeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEE
Confidence 37766 56643 5688999999999999999999999999999999999999888999999999999999999999999
Q ss_pred ecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcC
Q 000270 323 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA 402 (1749)
Q Consensus 323 L~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSP 402 (1749)
++...+.|+.++|..||. ..+++|+..|.+.+||++..+....+. ..|.+.|..+.|.|
T Consensus 240 Fk~d~g~VtslSFrtDG~--p~las~~~~G~m~~wDLe~kkl~~v~~-------------------nah~~sv~~~~fl~ 298 (910)
T KOG1539|consen 240 FKQDWGRVTSLSFRTDGN--PLLASGRSNGDMAFWDLEKKKLINVTR-------------------NAHYGSVTGATFLP 298 (910)
T ss_pred EEccccceeEEEeccCCC--eeEEeccCCceEEEEEcCCCeeeeeee-------------------ccccCCcccceecC
Confidence 985469999999999987 478999999999999999877655442 35677899999999
Q ss_pred CCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccc-cC----------------
Q 000270 403 NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLA-DS---------------- 465 (1749)
Q Consensus 403 DG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~-~~---------------- 465 (1749)
....+++++.|..+++|-..++.. ....++...||..+..||.|.........+.. +.
T Consensus 299 ~epVl~ta~~DnSlk~~vfD~~dg-----~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l 373 (910)
T KOG1539|consen 299 GEPVLVTAGADNSLKVWVFDSGDG-----VPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQEL 373 (910)
T ss_pred CCceEeeccCCCceeEEEeeCCCC-----cchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhh
Confidence 999999999999999998765431 24566777899999999999743211000000 00
Q ss_pred -----CC-----CCC---------CCcccccc----cCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCC
Q 000270 466 -----SK-----EDS---------TPKFKNSW----FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPP 522 (1749)
Q Consensus 466 -----~~-----~~~---------~~~~~~s~----~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~ 522 (1749)
.+ ... +..+...+ .-.+.+++.-.+..++.|+++.... +.|. +.
T Consensus 374 ~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~----G~~~----L~----- 440 (910)
T KOG1539|consen 374 GQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTS----GRHV----LD----- 440 (910)
T ss_pred cccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCccc----ccEE----ec-----
Confidence 00 000 00000000 0112333333445566666554221 0000 00
Q ss_pred CCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEe---cCCCCCeEEEEEcCCCCcEEE
Q 000270 523 MPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL---TGHTESTYVLDVHPFNPRIAM 599 (1749)
Q Consensus 523 ~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL---~gH~~~VtsLafSPdd~rlLa 599 (1749)
...+......+++++.+++|++.+.|...|.|-+||+++|-....+ ..|.++|++|+... -++.++
T Consensus 441 ----------~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~v 509 (910)
T KOG1539|consen 441 ----------PKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLV 509 (910)
T ss_pred ----------CccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEE
Confidence 0011123456899999999999999999999999999999999998 48999999999977 668899
Q ss_pred EEeCCCcEEEEeCCCCceEEEEeeeecc-------CCCEEEEEcCCCeEEEEECCCCcccccc------cceeeecCCCc
Q 000270 600 SAGYDGKTIVWDIWEGIPIRIYEISRFR-------DGASIILSDDVGQLYILNTGQGESQKDA------KYDQFFLGDYR 666 (1749)
Q Consensus 600 Sgs~DGtIrVWDl~tGk~l~tl~~~~~s-------DG~~LAsgd~DG~I~IWdl~tGe~~k~~------~~~~fFs~D~r 666 (1749)
|++.+|.+++||..+..++..+..+... ...++|.+.+|-.|.++|+.+.+..+.+ ..+..|++|++
T Consensus 510 sa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dgr 589 (910)
T KOG1539|consen 510 SAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGR 589 (910)
T ss_pred EccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCc
Confidence 9999999999999999988888765332 6678888999999999999876655333 35688999999
Q ss_pred ceeEcCC-Cc--EEecccccCCCCCCCCCccccCCCCCCCCcchhhhhhhcccccccccCCCCCceeeccCccCC-cCcc
Q 000270 667 PLVQDTY-GN--VLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLD-QGYQ 742 (1749)
Q Consensus 667 ~Lv~d~~-G~--Vld~~tq~~Phl~~~~~ll~D~~g~P~p~~~Q~l~p~R~l~~~~~a~sPdg~~lAvg~~~~ld-~~~~ 742 (1749)
||+.... +. ++|..+. ..+-.+++|.. ...+.|||.|..||.. -.+ .+..
T Consensus 590 WlisasmD~tIr~wDlpt~-----~lID~~~vd~~------------------~~sls~SPngD~LAT~---Hvd~~gIy 643 (910)
T KOG1539|consen 590 WLISASMDSTIRTWDLPTG-----TLIDGLLVDSP------------------CTSLSFSPNGDFLATV---HVDQNGIY 643 (910)
T ss_pred EEEEeecCCcEEEEeccCc-----ceeeeEecCCc------------------ceeeEECCCCCEEEEE---EecCceEE
Confidence 9987665 44 3443332 11112222221 1257899999999998 555 4777
Q ss_pred cCCc
Q 000270 743 LQPL 746 (1749)
Q Consensus 743 ~~p~ 746 (1749)
+|.+
T Consensus 644 lWsN 647 (910)
T KOG1539|consen 644 LWSN 647 (910)
T ss_pred EEEc
Confidence 7776
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-24 Score=249.73 Aligned_cols=298 Identities=19% Similarity=0.299 Sum_probs=243.8
Q ss_pred EEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEE----E------------E--ccCCCCeEEEEEcCCC
Q 000270 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLA----S------------C--RGHEGDITDLAVSSNN 297 (1749)
Q Consensus 236 i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~----t------------L--~gHs~~VtsLafSPDg 297 (1749)
+..+..|.-+|+||+++|++.++++++.+|+|.=|++.+|+... + . ++|...|.++++|+||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 66788999999999999999999999999999999998886431 1 1 2788999999999999
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcc
Q 000270 298 ALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAV 377 (1749)
Q Consensus 298 ~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~ 377 (1749)
++||+|+.|..|.||+..+.+.+.++.+|.+.|.+++|-.... .|++++.|++|++|++.....+.++
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~---~lys~s~Drsvkvw~~~~~s~vetl--------- 282 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTS---ELYSASADRSVKVWSIDQLSYVETL--------- 282 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCcc---ceeeeecCCceEEEehhHhHHHHHH---------
Confidence 9999999999999999999999999999999999999988665 8999999999999999877766655
Q ss_pred cCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcc
Q 000270 378 AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVA 457 (1749)
Q Consensus 378 ~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~a 457 (1749)
.+|+..|..|....-++.+.+|+.|+++++|++.. .....+.+|.+.+.|++|-.+
T Consensus 283 -----------yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e----------esqlifrg~~~sidcv~~In~--- 338 (479)
T KOG0299|consen 283 -----------YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE----------ESQLIFRGGEGSIDCVAFIND--- 338 (479)
T ss_pred -----------hCCccceeeechhcccceEEeccccceeEEEeccc----------cceeeeeCCCCCeeeEEEecc---
Confidence 46888999999888888888899999999999932 223467899999999999875
Q ss_pred cccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCccccc
Q 000270 458 SRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL 537 (1749)
Q Consensus 458 s~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~ 537 (1749)
..|++|+.+|.|.+|++...+++..... ...+ .+.....
T Consensus 339 ------------------------~HfvsGSdnG~IaLWs~~KKkplf~~~~-----AHgv------------~~~~~~~ 377 (479)
T KOG0299|consen 339 ------------------------EHFVSGSDNGSIALWSLLKKKPLFTSRL-----AHGV------------IPELDPV 377 (479)
T ss_pred ------------------------cceeeccCCceEEEeeecccCceeEeec-----cccc------------cCCcccc
Confidence 5899999999999999987654322110 0000 0000112
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC----ceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 000270 538 PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG----SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1749)
Q Consensus 538 ~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tg----klv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWD 611 (1749)
.+..+|++++..|...++|+|+.+|.|++|-+.+| .++..+. -.+.|++|+|++++.++++..|....+--|-
T Consensus 378 ~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 378 NGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred ccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceee
Confidence 23368999999999999999999999999999887 3444554 5678999999996666777777666665554
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-23 Score=260.77 Aligned_cols=265 Identities=20% Similarity=0.266 Sum_probs=205.3
Q ss_pred CCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEE-------------EEEccCCCCeEEEEEcC-CCcEEEEEeCCCe
Q 000270 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCL-------------ASCRGHEGDITDLAVSS-NNALVASASNDCI 308 (1749)
Q Consensus 243 ~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l-------------~tL~gHs~~VtsLafSP-Dg~lLASGS~DGt 308 (1749)
-..|....+++++..+++++.+..+..|+...+..+ ..+.+|.+.|++++|+| ++.+||+|+.|++
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt 99 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT 99 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence 345566667777777777777777778876544333 14678999999999999 8899999999999
Q ss_pred EEEEECCCC-------ceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCC
Q 000270 309 IRVWRLPDG-------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRN 381 (1749)
Q Consensus 309 IrVWDl~tg-------k~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~ 381 (1749)
|+|||+.++ .++..+.+|...|.+++|+|++. .+|++|+.|++|+|||+.++.....+
T Consensus 100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~--~iLaSgs~DgtVrIWDl~tg~~~~~l------------- 164 (493)
T PTZ00421 100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM--NVLASAGADMVVNVWDVERGKAVEVI------------- 164 (493)
T ss_pred EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC--CEEEEEeCCCEEEEEECCCCeEEEEE-------------
Confidence 999999765 35778899999999999999853 28999999999999999987654443
Q ss_pred CCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCC-eEEEEEcCCCccccc
Q 000270 382 MAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEND-VNYVQFSGCAVASRF 460 (1749)
Q Consensus 382 ~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~-V~sVafSpdg~as~~ 460 (1749)
..|...|.+++|+|+|.+|++|+.|+.|+|||+++ ...+..+.+|.+. +..+.|.+++
T Consensus 165 -------~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rs---------g~~v~tl~~H~~~~~~~~~w~~~~----- 223 (493)
T PTZ00421 165 -------KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRD---------GTIVSSVEAHASAKSQRCLWAKRK----- 223 (493)
T ss_pred -------cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCC---------CcEEEEEecCCCCcceEEEEcCCC-----
Confidence 34677899999999999999999999999999976 3346667788765 3456777764
Q ss_pred ccccCCCCCCCCcccccccCCCEEEEEe----CCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccc
Q 000270 461 SLADSSKEDSTPKFKNSWFCHDNIVTCS----RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI 536 (1749)
Q Consensus 461 s~~~~~~~~~~~~~~~s~~~~~~LaSgS----~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l 536 (1749)
..|++++ .|+.|++||+++... +....
T Consensus 224 ---------------------~~ivt~G~s~s~Dr~VklWDlr~~~~----------------------------p~~~~ 254 (493)
T PTZ00421 224 ---------------------DLIITLGCSKSQQRQIMLWDTRKMAS----------------------------PYSTV 254 (493)
T ss_pred ---------------------CeEEEEecCCCCCCeEEEEeCCCCCC----------------------------ceeEe
Confidence 4566544 579999999985321 01111
Q ss_pred c-CCCCCeeEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEecC-CCCCeEEEEEcC
Q 000270 537 L-PTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAADGSLVHSLTG-HTESTYVLDVHP 592 (1749)
Q Consensus 537 ~-~h~~~VtsVafSPDG~~LATGs-~DGtI~VWDl~tgklv~tL~g-H~~~VtsLafSP 592 (1749)
. .....+....|++++.+|++|+ .|+.|++||+.+++++..+.. +..++..++|.|
T Consensus 255 ~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 255 DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 1 1223466778999999999887 599999999999998876643 455788899988
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-24 Score=260.56 Aligned_cols=334 Identities=20% Similarity=0.335 Sum_probs=261.2
Q ss_pred CCCCEE---EEEEC-CCCCEEEEEeCCcEEEEEECCCC------eEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEE
Q 000270 242 HRNAVY---CAIFD-RSGRYVITGSDDRLVKIWSMETA------YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRV 311 (1749)
Q Consensus 242 H~~~Vt---~VaFS-PDG~~LATGS~DGtVrIWDl~Tg------~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrV 311 (1749)
|...|. .+..+ |.++||+|||.||.|++|++... ..+.+++.|..+|.+++...+++.|+++|.|-+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 444454 34444 46778999999999999998532 247788899999999999999999999999999999
Q ss_pred EECCCC--ceEEEecCCCCceEEEEe-ccCCCcceEEEeecCCCcEEEEEcCCCcc--cceeecCCCCCcccCCCCCCCC
Q 000270 312 WRLPDG--LPISVLRGHTAAVTAIAF-SPRPGSVYQLLSSSDDGTCRIWDARYSQF--SPRIYIPRPSDAVAGRNMAPSS 386 (1749)
Q Consensus 312 WDl~tg--k~l~tL~gHs~~VtsIaF-SPdg~~~~~LaSgS~DGtIrIWDl~tg~~--l~~l~~~~~~~~~~g~~~~~~~ 386 (1749)
|+...+ -++.++..|...|.|++. .++.. ++|+||-|+.|.+||+.++.. +..+. ......
T Consensus 100 W~~~~~~~~c~stir~H~DYVkcla~~ak~~~---lvaSgGLD~~IflWDin~~~~~l~~s~n-----------~~t~~s 165 (735)
T KOG0308|consen 100 WNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNE---LVASGGLDRKIFLWDINTGTATLVASFN-----------NVTVNS 165 (735)
T ss_pred eecccCcchhHhhhhcccchheeeeecccCce---eEEecCCCccEEEEEccCcchhhhhhcc-----------cccccc
Confidence 999877 688889999999999999 56554 899999999999999998743 21111 111111
Q ss_pred CCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCC
Q 000270 387 SAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSS 466 (1749)
Q Consensus 387 s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~ 466 (1749)
...++...|++++-++.|..|++|+..+.|++||.++ ...+..+.||+..|.++..+.+|
T Consensus 166 l~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt---------~~kimkLrGHTdNVr~ll~~dDG----------- 225 (735)
T KOG0308|consen 166 LGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT---------CKKIMKLRGHTDNVRVLLVNDDG----------- 225 (735)
T ss_pred CCCCCccceeeeecCCcceEEEecCcccceEEecccc---------ccceeeeeccccceEEEEEcCCC-----------
Confidence 1226778899999999999999999999999999976 45677888999999999999988
Q ss_pred CCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEE
Q 000270 467 KEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMI 546 (1749)
Q Consensus 467 ~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsV 546 (1749)
..++++|.||+|++||+..++ ++.++..|...|+++
T Consensus 226 ---------------t~~ls~sSDgtIrlWdLgqQr-----------------------------Cl~T~~vH~e~VWaL 261 (735)
T KOG0308|consen 226 ---------------TRLLSASSDGTIRLWDLGQQR-----------------------------CLATYIVHKEGVWAL 261 (735)
T ss_pred ---------------CeEeecCCCceEEeeeccccc-----------------------------eeeeEEeccCceEEE
Confidence 899999999999999998644 445567788899999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceE--------
Q 000270 547 VWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI-------- 618 (1749)
Q Consensus 547 afSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l-------- 618 (1749)
..+|+=.+|.+|+.||.|..=|+.+......+-....+|..+..+..+..+ -++..|+.|+-|...-...+
T Consensus 262 ~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~-WvtTtds~I~rW~~~~~~~l~~s~~~~~ 340 (735)
T KOG0308|consen 262 QSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSV-WVTTTDSSIKRWKLEPDIALSVSGDLDF 340 (735)
T ss_pred eeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCc-eeeeccccceecCCccccccccCCCCCc
Confidence 999999999999999999999998854433343445567777776544443 45678999999964321111
Q ss_pred -----------------EEEeeee-------ccCCCEEEEEcCCCeEEEEECCCCccccc
Q 000270 619 -----------------RIYEISR-------FRDGASIILSDDVGQLYILNTGQGESQKD 654 (1749)
Q Consensus 619 -----------------~tl~~~~-------~sDG~~LAsgd~DG~I~IWdl~tGe~~k~ 654 (1749)
.++.+++ ..|-+++++-+..|.+.+||+-.+..+..
T Consensus 341 ~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d 400 (735)
T KOG0308|consen 341 FSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVED 400 (735)
T ss_pred ccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhh
Confidence 1112211 11889999999999999999977665533
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-24 Score=234.43 Aligned_cols=282 Identities=23% Similarity=0.380 Sum_probs=231.4
Q ss_pred EEEEECC--CCCEE-EEE-----eCCcEEEEEECCCCeEEEEEc--cCCCCeEEEEEcCC-CcEEEEEeCCCeEEEEECC
Q 000270 247 YCAIFDR--SGRYV-ITG-----SDDRLVKIWSMETAYCLASCR--GHEGDITDLAVSSN-NALVASASNDCIIRVWRLP 315 (1749)
Q Consensus 247 t~VaFSP--DG~~L-ATG-----S~DGtVrIWDl~Tg~~l~tL~--gHs~~VtsLafSPD-g~lLASGS~DGtIrVWDl~ 315 (1749)
+++.||| .+++. ||+ ...|++.|.++..+.-+..+. .-...+.+++|+++ ...+++++.||+++|||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 6788999 34332 232 237899999997555454443 24678999999984 4578889999999999964
Q ss_pred C-CceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCc
Q 000270 316 D-GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1749)
Q Consensus 316 t-gk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~ 394 (1749)
- ..++..++.|...|.++.|.+-.+ ..+++++.||+|++|+...++.+.++ .+|...
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r--~~~ltsSWD~TiKLW~~~r~~Sv~Tf--------------------~gh~~~ 149 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRR--RIFLTSSWDGTIKLWDPNRPNSVQTF--------------------NGHNSC 149 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccc--eeEEeeccCCceEeecCCCCcceEee--------------------cCCccE
Confidence 3 368889999999999999999765 36788899999999998877665554 468888
Q ss_pred eEEEEEcC-CCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCc
Q 000270 395 IFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1749)
Q Consensus 395 Vt~LafSP-DG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~ 473 (1749)
|...+|+| .+++|++++.||++++||++.+ ++.+. +..|...|.++.|+.-.
T Consensus 150 Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~--------gk~~~-i~ah~~Eil~cdw~ky~------------------ 202 (311)
T KOG0277|consen 150 IYQAAFSPHIPNLFASASGDGTLRLWDVRSP--------GKFMS-IEAHNSEILCCDWSKYN------------------ 202 (311)
T ss_pred EEEEecCCCCCCeEEEccCCceEEEEEecCC--------CceeE-EEeccceeEeecccccC------------------
Confidence 99999999 5789999999999999999642 34444 88999999999998643
Q ss_pred ccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCC-
Q 000270 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN- 552 (1749)
Q Consensus 474 ~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG- 552 (1749)
+..|+||+.|+.|++||++.-+ .++..+.+|...|..|+|||..
T Consensus 203 -------~~vl~Tg~vd~~vr~wDir~~r----------------------------~pl~eL~gh~~AVRkvk~Sph~~ 247 (311)
T KOG0277|consen 203 -------HNVLATGGVDNLVRGWDIRNLR----------------------------TPLFELNGHGLAVRKVKFSPHHA 247 (311)
T ss_pred -------CcEEEecCCCceEEEEehhhcc----------------------------ccceeecCCceEEEEEecCcchh
Confidence 5799999999999999998632 3466778899999999999975
Q ss_pred CEEEEEeCCCeEEEEECCCC-ceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 000270 553 RFVLAAIMDCRICVWNAADG-SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1749)
Q Consensus 553 ~~LATGs~DGtI~VWDl~tg-klv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl 612 (1749)
..||+++.|-+++|||...+ .++.+...|+.-|..+.|++..+.++|+++.|+.++||+.
T Consensus 248 ~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 248 SLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 57899999999999999744 5667788899999999999999999999999999999984
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-24 Score=238.41 Aligned_cols=297 Identities=24% Similarity=0.437 Sum_probs=251.4
Q ss_pred ccceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEE
Q 000270 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRV 311 (1749)
Q Consensus 232 ~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrV 311 (1749)
.+.+++.|.||.+.|+.++......++.|++.|.+.+||.+++|.|+.++.||.+.|.+|.|++.+.++++++.|++..|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 45678889999999999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred EEC------CC------------------------------C----ceEEEecCCCCceEEEEeccCCCcceEEEeecCC
Q 000270 312 WRL------PD------------------------------G----LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD 351 (1749)
Q Consensus 312 WDl------~t------------------------------g----k~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~D 351 (1749)
|.. .. + .++..|.+|.+.|.+..|...++ .+++++.|
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~---Q~vTaSWD 293 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ---QMVTASWD 293 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc---eeeeeecc
Confidence 962 11 1 24567889999999999999887 89999999
Q ss_pred CcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCC
Q 000270 352 GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQ 431 (1749)
Q Consensus 352 GtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~ 431 (1749)
.+..+||++++..+..+ .+|...++.++-+|..+++++.+.|.+.++||++.
T Consensus 294 RTAnlwDVEtge~v~~L--------------------tGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe-------- 345 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNIL--------------------TGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE-------- 345 (481)
T ss_pred ccceeeeeccCceeccc--------------------cCcchhccccccCCcceEEEEeccCceeEeccchh--------
Confidence 99999999999877655 46888899999999999999999999999999963
Q ss_pred CCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccc
Q 000270 432 PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 511 (1749)
Q Consensus 432 ~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~ 511 (1749)
....+..|.||...|+++.|..+ +.+++|+.|.+|++||+++.+.
T Consensus 346 aI~sV~VFQGHtdtVTS~vF~~d---------------------------d~vVSgSDDrTvKvWdLrNMRs-------- 390 (481)
T KOG0300|consen 346 AIQSVAVFQGHTDTVTSVVFNTD---------------------------DRVVSGSDDRTVKVWDLRNMRS-------- 390 (481)
T ss_pred hcceeeeecccccceeEEEEecC---------------------------CceeecCCCceEEEeeeccccC--------
Confidence 25567889999999999999875 5899999999999999986431
Q ss_pred cccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEE----EecCCCCCeEE
Q 000270 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVH----SLTGHTESTYV 587 (1749)
Q Consensus 512 ~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~----tL~gH~~~Vts 587 (1749)
++.+ .-...+++.++.+..+..||.--.+..|++||+....+.+ .-+||...|++
T Consensus 391 --------------------plAT-IRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c 449 (481)
T KOG0300|consen 391 --------------------PLAT-IRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTC 449 (481)
T ss_pred --------------------ccee-eecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeee
Confidence 1111 1234578899999999999999999999999996443322 33689999999
Q ss_pred EEEcCCCC-cEEEEEeCCCcEEEEeCCCC
Q 000270 588 LDVHPFNP-RIAMSAGYDGKTIVWDIWEG 615 (1749)
Q Consensus 588 LafSPdd~-rlLaSgs~DGtIrVWDl~tG 615 (1749)
++|....+ .-|+++|.|..+.-|.+.+.
T Consensus 450 ~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 450 CAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eeccccCcccccccccccceeeeeEeccc
Confidence 99965322 34668999999999998654
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.2e-24 Score=265.82 Aligned_cols=261 Identities=24% Similarity=0.454 Sum_probs=224.2
Q ss_pred CccccccceEEE-EccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeC
Q 000270 227 STMVQKMQNIKR-VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN 305 (1749)
Q Consensus 227 ~~~~~~~~~i~t-L~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~ 305 (1749)
.|.......+.+ |.||.+.|.+++|..-+.+|++|+.|.+++|||+.+|.+..++.+|.+.|.++... ..++++|+.
T Consensus 232 ~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~ 309 (537)
T KOG0274|consen 232 LWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSR 309 (537)
T ss_pred EeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccC
Confidence 344444555555 99999999999998878899999999999999999999999999999999999875 557889999
Q ss_pred CCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCC
Q 000270 306 DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS 385 (1749)
Q Consensus 306 DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~ 385 (1749)
|.+|+||++.++.++.++.+|.++|.++.... . ++++|+.||+|++||+.+++++..+
T Consensus 310 D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~--~---~lvsgs~d~~v~VW~~~~~~cl~sl----------------- 367 (537)
T KOG0274|consen 310 DNTVKVWDVTNGACLNLLRGHTGPVNCVQLDE--P---LLVSGSYDGTVKVWDPRTGKCLKSL----------------- 367 (537)
T ss_pred CceEEEEeccCcceEEEeccccccEEEEEecC--C---EEEEEecCceEEEEEhhhceeeeee-----------------
Confidence 99999999999999999999999999999983 3 8999999999999999999988776
Q ss_pred CCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccC
Q 000270 386 SSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 465 (1749)
Q Consensus 386 ~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~ 465 (1749)
.+|.+.|.++.+.+. ..+++|+.|++|++||+.+.. .++.++.+|..-|..+.+..
T Consensus 368 ---~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--------~c~~tl~~h~~~v~~l~~~~------------ 423 (537)
T KOG0274|consen 368 ---SGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--------KCIHTLQGHTSLVSSLLLRD------------ 423 (537)
T ss_pred ---cCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--------hhhhhhcCCccccccccccc------------
Confidence 469999999988765 899999999999999997631 67889999999887766543
Q ss_pred CCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccC-CCCCee
Q 000270 466 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP-TPRGVN 544 (1749)
Q Consensus 466 ~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~-h~~~Vt 544 (1749)
++|++++.||+|++||..+++ ++..+.+ +...|+
T Consensus 424 ----------------~~Lvs~~aD~~Ik~WD~~~~~-----------------------------~~~~~~~~~~~~v~ 458 (537)
T KOG0274|consen 424 ----------------NFLVSSSADGTIKLWDAEEGE-----------------------------CLRTLEGRHVGGVS 458 (537)
T ss_pred ----------------ceeEeccccccEEEeecccCc-----------------------------eeeeeccCCcccEE
Confidence 689999999999999988644 3334444 557788
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCC
Q 000270 545 MIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHT 582 (1749)
Q Consensus 545 sVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~ 582 (1749)
.+++. ...+++++.||.+++||+.++++++.+-.+.
T Consensus 459 ~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~~~~ 494 (537)
T KOG0274|consen 459 ALALG--KEEILCSSDDGSVKLWDLRSGTLIRTLLSTD 494 (537)
T ss_pred EeecC--cceEEEEecCCeeEEEecccCchhhhhhhcc
Confidence 88876 5689999999999999999999998774443
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-23 Score=253.43 Aligned_cols=277 Identities=19% Similarity=0.336 Sum_probs=236.0
Q ss_pred EEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecC-CC
Q 000270 249 AIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRG-HT 327 (1749)
Q Consensus 249 VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~g-Hs 327 (1749)
+.|+ ..+.||+|.. ..|++|+..++.....+..+...|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |.
T Consensus 183 ldWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~ 260 (484)
T KOG0305|consen 183 LDWS-SANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA 260 (484)
T ss_pred hhcc-cCCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcC
Confidence 4577 4457777754 5799999999987777776689999999999999999999999999999999999999998 99
Q ss_pred CceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEE
Q 000270 328 AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVF 407 (1749)
Q Consensus 328 ~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~L 407 (1749)
..|.+++|... .+.+|+.||.|.++|++..+.... ...+|...|..+.|++|+.+|
T Consensus 261 ~rvg~laW~~~-----~lssGsr~~~I~~~dvR~~~~~~~-------------------~~~~H~qeVCgLkws~d~~~l 316 (484)
T KOG0305|consen 261 SRVGSLAWNSS-----VLSSGSRDGKILNHDVRISQHVVS-------------------TLQGHRQEVCGLKWSPDGNQL 316 (484)
T ss_pred ceeEEEeccCc-----eEEEecCCCcEEEEEEecchhhhh-------------------hhhcccceeeeeEECCCCCee
Confidence 99999999943 789999999999999987764433 135688999999999999999
Q ss_pred EEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEE
Q 000270 408 VTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC 487 (1749)
Q Consensus 408 aSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSg 487 (1749)
|+|+.|+.|.|||... ...+..+..|...|.+++|+|-. +..||+|
T Consensus 317 ASGgnDN~~~Iwd~~~---------~~p~~~~~~H~aAVKA~awcP~q-------------------------~~lLAsG 362 (484)
T KOG0305|consen 317 ASGGNDNVVFIWDGLS---------PEPKFTFTEHTAAVKALAWCPWQ-------------------------SGLLATG 362 (484)
T ss_pred ccCCCccceEeccCCC---------ccccEEEeccceeeeEeeeCCCc-------------------------cCceEEc
Confidence 9999999999999943 34567889999999999999954 4688886
Q ss_pred e--CCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEE--eCCCe
Q 000270 488 S--RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA--IMDCR 563 (1749)
Q Consensus 488 S--~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATG--s~DGt 563 (1749)
+ .|++|++||+.++..+ ........|+.|.|++..+-|+++ ..++.
T Consensus 363 GGs~D~~i~fwn~~~g~~i------------------------------~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~ 412 (484)
T KOG0305|consen 363 GGSADRCIKFWNTNTGARI------------------------------DSVDTGSQVCSLIWSKKYKELLSTHGYSENQ 412 (484)
T ss_pred CCCcccEEEEEEcCCCcEe------------------------------cccccCCceeeEEEcCCCCEEEEecCCCCCc
Confidence 5 6999999999875422 122345679999999999777765 35678
Q ss_pred EEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 000270 564 ICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI 616 (1749)
Q Consensus 564 I~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk 616 (1749)
|.||+..+.+.+..+.||...|..++++| ++..+++|+.|.++++|++....
T Consensus 413 i~lw~~ps~~~~~~l~gH~~RVl~la~SP-dg~~i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 413 ITLWKYPSMKLVAELLGHTSRVLYLALSP-DGETIVTGAADETLRFWNLFDER 464 (484)
T ss_pred EEEEeccccceeeeecCCcceeEEEEECC-CCCEEEEecccCcEEeccccCCC
Confidence 99999999999999999999999999999 67888999999999999997753
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.9e-24 Score=234.56 Aligned_cols=296 Identities=21% Similarity=0.348 Sum_probs=231.7
Q ss_pred EEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCC-----------------C-eEEEEEccCCCCeEEEEEcCCC
Q 000270 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET-----------------A-YCLASCRGHEGDITDLAVSSNN 297 (1749)
Q Consensus 236 i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~T-----------------g-~~l~tL~gHs~~VtsLafSPDg 297 (1749)
...+..|..++.|.+|++||.++|||+.|..|+|.|++- + ..+++|-.|...|.++.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 466889999999999999999999999999999999861 1 3577888999999999999999
Q ss_pred cEEEEEeCCCeEEEEECCCCceE---EEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCC
Q 000270 298 ALVASASNDCIIRVWRLPDGLPI---SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS 374 (1749)
Q Consensus 298 ~lLASGS~DGtIrVWDl~tgk~l---~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~ 374 (1749)
..|++|+.|++|+++|+...... +++. ...+|.+|.|+|.|. +|++|..-.++++||+.+.++...-
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGe---fllvgTdHp~~rlYdv~T~Qcfvsa------ 254 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGE---FLLVGTDHPTLRLYDVNTYQCFVSA------ 254 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCc---eEEEecCCCceeEEeccceeEeeec------
Confidence 99999999999999998654222 2232 456899999999998 9999999999999999987754322
Q ss_pred CcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeee-cCCCC-CeEEEEEc
Q 000270 375 DAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVL-SGHEN-DVNYVQFS 452 (1749)
Q Consensus 375 ~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l-~gH~~-~V~sVafS 452 (1749)
.....|.+.|+++.+++.|++.++|+.||.|+|||--+ .+++.++ .+|.+ .|.+..|.
T Consensus 255 -----------nPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS---------~rCv~t~~~AH~gsevcSa~Ft 314 (430)
T KOG0640|consen 255 -----------NPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVS---------NRCVRTIGNAHGGSEVCSAVFT 314 (430)
T ss_pred -----------CcccccccceeEEEecCCccEEEEeccCCcEEeecccc---------HHHHHHHHhhcCCceeeeEEEc
Confidence 12356889999999999999999999999999999754 3445444 35654 68888899
Q ss_pred CCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCC
Q 000270 453 GCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGP 532 (1749)
Q Consensus 453 pdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~ 532 (1749)
.++ ++|++.+.|..+++|.+.+++.+.....-. .
T Consensus 315 kn~--------------------------kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg----------------~---- 348 (430)
T KOG0640|consen 315 KNG--------------------------KYILSSGKDSTVKLWEISTGRMLKEYTGAG----------------T---- 348 (430)
T ss_pred cCC--------------------------eEEeecCCcceeeeeeecCCceEEEEecCC----------------c----
Confidence 887 899999999999999999877543221100 0
Q ss_pred cccccCCCCCeeEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEe-cCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 000270 533 RQRILPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAADGSLVHSL-TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVW 610 (1749)
Q Consensus 533 i~~l~~h~~~VtsVafSPDG~~LATGs-~DGtI~VWDl~tgklv~tL-~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVW 610 (1749)
.+...--+...|.....|++.-. ..+.++-||.+++..+..+ .||.+.+..+.-+|.+ -.+++|+.|..+++|
T Consensus 349 ----tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~-p~FmTcsdD~raRFW 423 (430)
T KOG0640|consen 349 ----TGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVE-PAFMTCSDDFRARFW 423 (430)
T ss_pred ----ccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCC-Cceeeecccceeeee
Confidence 00111123344555556665544 3467999999998877655 4899999999999955 455699999999999
Q ss_pred eC
Q 000270 611 DI 612 (1749)
Q Consensus 611 Dl 612 (1749)
--
T Consensus 424 yr 425 (430)
T KOG0640|consen 424 YR 425 (430)
T ss_pred ee
Confidence 53
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-23 Score=240.34 Aligned_cols=284 Identities=21% Similarity=0.329 Sum_probs=245.3
Q ss_pred CCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEe
Q 000270 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL 323 (1749)
Q Consensus 244 ~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL 323 (1749)
..|+++...+....++||+.|..+.++|..+++.+.+|.||...|+.+.|+++...+++++.|..|+||...........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 46888888888788999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred cCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCC
Q 000270 324 RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN 403 (1749)
Q Consensus 324 ~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPD 403 (1749)
..|..+|+.+..+|.+. ||++++.||+..+.|++++.++..... ....-.+++.+|+||
T Consensus 300 ~~h~~~V~~ls~h~tge---YllsAs~d~~w~Fsd~~~g~~lt~vs~------------------~~s~v~~ts~~fHpD 358 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGE---YLLSASNDGTWAFSDISSGSQLTVVSD------------------ETSDVEYTSAAFHPD 358 (506)
T ss_pred ccccccceeeeeccCCc---EEEEecCCceEEEEEccCCcEEEEEee------------------ccccceeEEeeEcCC
Confidence 99999999999999998 999999999999999999987766532 112345899999999
Q ss_pred CCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCE
Q 000270 404 GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDN 483 (1749)
Q Consensus 404 G~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~ 483 (1749)
|.+|++|..||.|+|||+.. ...+..|.+|+++|..|+|+-+| -+
T Consensus 359 gLifgtgt~d~~vkiwdlks---------~~~~a~Fpght~~vk~i~FsENG--------------------------Y~ 403 (506)
T KOG0289|consen 359 GLIFGTGTPDGVVKIWDLKS---------QTNVAKFPGHTGPVKAISFSENG--------------------------YW 403 (506)
T ss_pred ceEEeccCCCceEEEEEcCC---------ccccccCCCCCCceeEEEeccCc--------------------------eE
Confidence 99999999999999999965 33567789999999999999988 58
Q ss_pred EEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCe
Q 000270 484 IVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCR 563 (1749)
Q Consensus 484 LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGt 563 (1749)
|++++.|+.|++||++..+....+ ......+|.++.|...|.+|+.++.|=.
T Consensus 404 Lat~add~~V~lwDLRKl~n~kt~----------------------------~l~~~~~v~s~~fD~SGt~L~~~g~~l~ 455 (506)
T KOG0289|consen 404 LATAADDGSVKLWDLRKLKNFKTI----------------------------QLDEKKEVNSLSFDQSGTYLGIAGSDLQ 455 (506)
T ss_pred EEEEecCCeEEEEEehhhccccee----------------------------eccccccceeEEEcCCCCeEEeecceeE
Confidence 999999999999999964311111 0112236899999999999999988877
Q ss_pred EEEEECC--CCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 000270 564 ICVWNAA--DGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1749)
Q Consensus 564 I~VWDl~--tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl 612 (1749)
|++++-. .+.++..+..|.+..+.+.|.. ..++++++|.|..++|+.+
T Consensus 456 Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~-~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 456 VYICKKKTKSWTEIKELADHSGLSTGVRFGE-HAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEEEecccccceeeehhhhcccccceeeecc-cceEEeeccchhheEEeec
Confidence 8887743 5678888889999999999977 6789999999999888764
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=251.83 Aligned_cols=283 Identities=22% Similarity=0.379 Sum_probs=243.4
Q ss_pred ccceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEE--EEEccCCCCeEE-EEEcC-CCcEEEEEeCCC
Q 000270 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCL--ASCRGHEGDITD-LAVSS-NNALVASASNDC 307 (1749)
Q Consensus 232 ~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l--~tL~gHs~~Vts-LafSP-Dg~lLASGS~DG 307 (1749)
.+++.+.|.||...|..+++.+.. .++++|.||+++||+-..++.+ ..+.+|.+.|.. +++.+ ++-.|++|+.|+
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred cceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 456788999999999998876544 8999999999999998665544 357788888887 88875 566799999999
Q ss_pred eEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCC
Q 000270 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSS 387 (1749)
Q Consensus 308 tIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s 387 (1749)
+|.+|.+.+..++.+|.+|...|.++....++ .+++|+.|.++++|-.... ...
T Consensus 82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~----~~iSgSWD~TakvW~~~~l--~~~-------------------- 135 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDG----TLISGSWDSTAKVWRIGEL--VYS-------------------- 135 (745)
T ss_pred eEEEEecCCCCchhhhhccccceeeeecCCcC----ceEecccccceEEecchhh--hcc--------------------
Confidence 99999999999999999999999999987775 5899999999999976432 221
Q ss_pred CCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCC
Q 000270 388 AGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK 467 (1749)
Q Consensus 388 ~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~ 467 (1749)
..+|...|+++++-|.+ .+++|+.|.+|++|.- ...+.++.+|.+-|..+++-++.
T Consensus 136 l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~-----------~~~l~tf~gHtD~VRgL~vl~~~------------ 191 (745)
T KOG0301|consen 136 LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG-----------GTLLKTFSGHTDCVRGLAVLDDS------------ 191 (745)
T ss_pred cCCcchheeeeeecCCC-cEEeccCcceeeeccC-----------CchhhhhccchhheeeeEEecCC------------
Confidence 36799999999999988 8999999999999987 55788999999999999998864
Q ss_pred CCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEE
Q 000270 468 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 547 (1749)
Q Consensus 468 ~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVa 547 (1749)
.|++|+.||.|++|++. +..+.+..+|..-|.++.
T Consensus 192 ---------------~flScsNDg~Ir~w~~~------------------------------ge~l~~~~ghtn~vYsis 226 (745)
T KOG0301|consen 192 ---------------HFLSCSNDGSIRLWDLD------------------------------GEVLLEMHGHTNFVYSIS 226 (745)
T ss_pred ---------------CeEeecCCceEEEEecc------------------------------CceeeeeeccceEEEEEE
Confidence 79999999999999985 455677888999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 000270 548 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1749)
Q Consensus 548 fSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~t 614 (1749)
..+++..|++++.|++++||+.. .+++.+.-.+..|+++.+-+ ++.+ ++|+.||.|+||....
T Consensus 227 ~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~-NgDI-vvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 227 MALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLL-NGDI-VVGGSDGRVRVFTVDK 289 (745)
T ss_pred ecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEee-CCCE-EEeccCceEEEEEecc
Confidence 89999999999999999999975 88898887777899999987 5555 4789999999998753
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-23 Score=244.94 Aligned_cols=280 Identities=19% Similarity=0.264 Sum_probs=232.4
Q ss_pred CCCEEEEEECCCCC--EEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceE
Q 000270 243 RNAVYCAIFDRSGR--YVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI 320 (1749)
Q Consensus 243 ~~~Vt~VaFSPDG~--~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l 320 (1749)
.+.|.+++|+|... +.+|+| -.|.||+..+...++++......|++++|-.||++||+|...|.|+|+|+.+...+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred cCcceeEecCCCCCCceEEecc--cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 36799999999542 344443 47999999998888888888899999999999999999999999999998776778
Q ss_pred EEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEE
Q 000270 321 SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 400 (1749)
Q Consensus 321 ~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~Laf 400 (1749)
..+.+|+.+|..+.|+|.++ ..|++|++|+.+++||+.+... .+. ..+|.+.|.|.+|
T Consensus 104 R~~~ah~apv~~~~f~~~d~--t~l~s~sDd~v~k~~d~s~a~v--~~~------------------l~~htDYVR~g~~ 161 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDN--TMLVSGSDDKVVKYWDLSTAYV--QAE------------------LSGHTDYVRCGDI 161 (487)
T ss_pred HHHhhccCceeEEEecccCC--eEEEecCCCceEEEEEcCCcEE--EEE------------------ecCCcceeEeecc
Confidence 88999999999999999876 4789999999999999998774 222 2578999999999
Q ss_pred cCC-CCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCccccccc
Q 000270 401 NAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWF 479 (1749)
Q Consensus 401 SPD-G~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~ 479 (1749)
+|. +..+++|+.||.|++||++... ....--.|..+|..+.|-|.+
T Consensus 162 ~~~~~hivvtGsYDg~vrl~DtR~~~---------~~v~elnhg~pVe~vl~lpsg------------------------ 208 (487)
T KOG0310|consen 162 SPANDHIVVTGSYDGKVRLWDTRSLT---------SRVVELNHGCPVESVLALPSG------------------------ 208 (487)
T ss_pred ccCCCeEEEecCCCceEEEEEeccCC---------ceeEEecCCCceeeEEEcCCC------------------------
Confidence 995 5589999999999999997521 122334789999999999986
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEe
Q 000270 480 CHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI 559 (1749)
Q Consensus 480 ~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs 559 (1749)
..|++++ ...|++||+.++. ..+.....|...|||+++..+++.|++|+
T Consensus 209 --s~iasAg-Gn~vkVWDl~~G~----------------------------qll~~~~~H~KtVTcL~l~s~~~rLlS~s 257 (487)
T KOG0310|consen 209 --SLIASAG-GNSVKVWDLTTGG----------------------------QLLTSMFNHNKTVTCLRLASDSTRLLSGS 257 (487)
T ss_pred --CEEEEcC-CCeEEEEEecCCc----------------------------eehhhhhcccceEEEEEeecCCceEeecc
Confidence 5677765 4589999998633 22233445889999999999999999999
Q ss_pred CCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 000270 560 MDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1749)
Q Consensus 560 ~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl 612 (1749)
-|+.|+|||+.+.+.++.+. -.++|.+++.+| ++..++.|..+|.+.+=+.
T Consensus 258 LD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~-dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 258 LDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSP-DDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred cccceEEEEccceEEEEeee-cccceeeEEecC-CCceEEEecccceeeeehh
Confidence 99999999999999998886 467899999999 6677788999998877644
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-24 Score=235.71 Aligned_cols=277 Identities=20% Similarity=0.295 Sum_probs=234.8
Q ss_pred cCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEe--------cCCCCceEEEEeccCCCcceEEEeecCCCcE
Q 000270 283 GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL--------RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354 (1749)
Q Consensus 283 gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL--------~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtI 354 (1749)
+..+.+.|..|||||++|++|+.||.|.||+..+|+...-+ --+...|.|+.|+.|.. .||+|+.||.|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE---MlAsGsqDGkI 287 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE---MLASGSQDGKI 287 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH---HhhccCcCCcE
Confidence 45667889999999999999999999999999999765443 34778999999999987 89999999999
Q ss_pred EEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCc
Q 000270 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNH 434 (1749)
Q Consensus 355 rIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~ 434 (1749)
++|.+.+|.|+.++. ..|...|+|+.||.|+..+++++.|.+|+|--+.+ ++
T Consensus 288 KvWri~tG~ClRrFd-------------------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS---------GK 339 (508)
T KOG0275|consen 288 KVWRIETGQCLRRFD-------------------RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS---------GK 339 (508)
T ss_pred EEEEEecchHHHHhh-------------------hhhccCeeEEEEccCcchhhcccccceEEEecccc---------ch
Confidence 999999999998873 46888899999999999999999999999998865 56
Q ss_pred ceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCcccccccccc
Q 000270 435 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 514 (1749)
Q Consensus 435 ~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~ 514 (1749)
++..+.||...|+...|.++| ..+++++.||+|++|+..+..+...+.
T Consensus 340 ~LKEfrGHsSyvn~a~ft~dG--------------------------~~iisaSsDgtvkvW~~KtteC~~Tfk------ 387 (508)
T KOG0275|consen 340 CLKEFRGHSSYVNEATFTDDG--------------------------HHIISASSDGTVKVWHGKTTECLSTFK------ 387 (508)
T ss_pred hHHHhcCccccccceEEcCCC--------------------------CeEEEecCCccEEEecCcchhhhhhcc------
Confidence 788899999999999999998 899999999999999998765433221
Q ss_pred ccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEEECCCCceEEEecCC---CCCeEEEEE
Q 000270 515 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN-RFVLAAIMDCRICVWNAADGSLVHSLTGH---TESTYVLDV 590 (1749)
Q Consensus 515 ~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG-~~LATGs~DGtI~VWDl~tgklv~tL~gH---~~~VtsLaf 590 (1749)
..+....|+.+..-|.. ..++++...++|+|-++ .|+.++.|... .+...+.+.
T Consensus 388 ---------------------~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~l 445 (508)
T KOG0275|consen 388 ---------------------PLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAIL 445 (508)
T ss_pred ---------------------CCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEe
Confidence 12234567777766644 67888888999999998 58888888632 345667788
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCceEEEEeee--------eccCCCEEEEEcCCCeEEEEE
Q 000270 591 HPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS--------RFRDGASIILSDDVGQLYILN 645 (1749)
Q Consensus 591 SPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~--------~~sDG~~LAsgd~DG~I~IWd 645 (1749)
+| .+.++++.+.|+.++.+.+.+|++.+++..+ ++|.-++||+-+.||.+.+|.
T Consensus 446 Sp-kGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 446 SP-KGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cC-CCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 99 7788999999999999999999999988754 566889999999999999995
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-24 Score=243.14 Aligned_cols=289 Identities=17% Similarity=0.286 Sum_probs=231.8
Q ss_pred EEEEccCCCCEEEEEECCCC-CEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEEC
Q 000270 236 IKRVRGHRNAVYCAIFDRSG-RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314 (1749)
Q Consensus 236 i~tL~GH~~~Vt~VaFSPDG-~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl 314 (1749)
+..|.||.++|.|++=+|.. ..+|+|+.||.|+|||+.+..++.+|.+|.+.|..|++.. ..+++++.|.+|+.|-+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 45689999999999999977 7899999999999999999999999999999999999986 67889999999999997
Q ss_pred CCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCc
Q 000270 315 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1749)
Q Consensus 315 ~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~ 394 (1749)
.. .++.++.+ .+.+..|.-+..+. .++++|.+ |.|||......+..+.. ....
T Consensus 137 ~~-~p~~tilg-~s~~~gIdh~~~~~---~FaTcGe~--i~IWD~~R~~Pv~smsw--------------------G~Dt 189 (433)
T KOG0268|consen 137 DG-PPLHTILG-KSVYLGIDHHRKNS---VFATCGEQ--IDIWDEQRDNPVSSMSW--------------------GADS 189 (433)
T ss_pred cC-Ccceeeec-cccccccccccccc---cccccCce--eeecccccCCccceeec--------------------CCCc
Confidence 54 46666653 34566776666554 78888875 99999987776666543 3456
Q ss_pred eEEEEEcCCCC-EEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCc
Q 000270 395 IFCCAFNANGT-VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1749)
Q Consensus 395 Vt~LafSPDG~-~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~ 473 (1749)
|.++.|+|... .|++|+.|+.|.|||+++... .+.+. ..-.-+.|+|+|.+
T Consensus 190 i~svkfNpvETsILas~~sDrsIvLyD~R~~~P------l~KVi----~~mRTN~IswnPea------------------ 241 (433)
T KOG0268|consen 190 ISSVKFNPVETSILASCASDRSIVLYDLRQASP------LKKVI----LTMRTNTICWNPEA------------------ 241 (433)
T ss_pred eeEEecCCCcchheeeeccCCceEEEecccCCc------cceee----eeccccceecCccc------------------
Confidence 99999999654 677777999999999986432 22111 12244678999965
Q ss_pred ccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCC
Q 000270 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 553 (1749)
Q Consensus 474 ~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~ 553 (1749)
..|++++.|..++.||++.. ..++....+|...|..|.|||-|+
T Consensus 242 --------fnF~~a~ED~nlY~~DmR~l----------------------------~~p~~v~~dhvsAV~dVdfsptG~ 285 (433)
T KOG0268|consen 242 --------FNFVAANEDHNLYTYDMRNL----------------------------SRPLNVHKDHVSAVMDVDFSPTGQ 285 (433)
T ss_pred --------cceeeccccccceehhhhhh----------------------------cccchhhcccceeEEEeccCCCcc
Confidence 57899999999999999852 244566778999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEec-CCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceE
Q 000270 554 FVLAAIMDCRICVWNAADGSLVHSLT-GHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618 (1749)
Q Consensus 554 ~LATGs~DGtI~VWDl~tgklv~tL~-gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l 618 (1749)
-+++|+.|.+|+||.+..+...-++. ..-..|.++.|+. |.++++||+.|+.|++|.....+.+
T Consensus 286 EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~-Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 286 EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM-DSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred hhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEec-cccEEEecCCCcceeeeecchhhhc
Confidence 99999999999999998776544432 1234699999999 8899999999999999987554443
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.7e-23 Score=223.89 Aligned_cols=280 Identities=20% Similarity=0.248 Sum_probs=233.2
Q ss_pred EEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEE--EecCCCCceEEEEeccCCCcceEEEeecCCCcEEE
Q 000270 279 ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS--VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356 (1749)
Q Consensus 279 ~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~--tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrI 356 (1749)
+.+++|...|.+++|+.+|..||+|+.|+++.||++..++.+. ...+|++.|-.++|+|... ..|++++.|.+|++
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~--d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP--DLFATASGDKTIRI 91 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC--cceEEecCCceEEE
Confidence 4567899999999999999999999999999999998775544 3468999999999999765 48999999999999
Q ss_pred EEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcce
Q 000270 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 436 (1749)
Q Consensus 357 WDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i 436 (1749)
||++.+++...+.. .+.-.-++|+|+|.++++++.|..|.+.|.++.+.
T Consensus 92 wd~r~~k~~~~i~~---------------------~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~---------- 140 (313)
T KOG1407|consen 92 WDIRSGKCTARIET---------------------KGENINITWSPDGEYIAVGNKDDRITFIDARTYKI---------- 140 (313)
T ss_pred EEeccCcEEEEeec---------------------cCcceEEEEcCCCCEEEEecCcccEEEEEecccce----------
Confidence 99999998877642 22234578999999999999999999999976332
Q ss_pred eeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCcccccccccccc
Q 000270 437 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 516 (1749)
Q Consensus 437 ~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l 516 (1749)
..-......++-++|+.+. ++|+....-|+|.|..+..
T Consensus 141 ~~~~~~~~e~ne~~w~~~n--------------------------d~Fflt~GlG~v~ILsyps---------------- 178 (313)
T KOG1407|consen 141 VNEEQFKFEVNEISWNNSN--------------------------DLFFLTNGLGCVEILSYPS---------------- 178 (313)
T ss_pred eehhcccceeeeeeecCCC--------------------------CEEEEecCCceEEEEeccc----------------
Confidence 2222334456777887544 7888888889999976553
Q ss_pred CCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCc
Q 000270 517 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR 596 (1749)
Q Consensus 517 ~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~r 596 (1749)
-.++..+.+|...+.||.|+|+|+++|+|+.|..+.+||+..--|++.+.-+.-+|..|.|+- +++
T Consensus 179 -------------Lkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~-dg~ 244 (313)
T KOG1407|consen 179 -------------LKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH-DGR 244 (313)
T ss_pred -------------cccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc-Ccc
Confidence 346677888999999999999999999999999999999999999999999999999999999 899
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEe-------eeeccCCCEEEEEcCC---------CeEEEEECC
Q 000270 597 IAMSAGYDGKTIVWDIWEGIPIRIYE-------ISRFRDGASIILSDDV---------GQLYILNTG 647 (1749)
Q Consensus 597 lLaSgs~DGtIrVWDl~tGk~l~tl~-------~~~~sDG~~LAsgd~D---------G~I~IWdl~ 647 (1749)
+||+|+.|..|-|=++.||..+..+. ..++|.-.+||.+.+| |.|+||.+.
T Consensus 245 ~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 245 MLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred eeeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 99999999999999999998887654 3567778888876553 677777653
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-22 Score=252.17 Aligned_cols=245 Identities=18% Similarity=0.239 Sum_probs=190.2
Q ss_pred EeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCC-CcEEEEEeCCCeEEEEECCCCc--------eEEEecCCCCceE
Q 000270 261 GSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSN-NALVASASNDCIIRVWRLPDGL--------PISVLRGHTAAVT 331 (1749)
Q Consensus 261 GS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPD-g~lLASGS~DGtIrVWDl~tgk--------~l~tL~gHs~~Vt 331 (1749)
|+.++.|+||++.....+..+.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++. ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 667899999999888889999999999999999996 7899999999999999997642 4457889999999
Q ss_pred EEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEec
Q 000270 332 AIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS 411 (1749)
Q Consensus 332 sIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs 411 (1749)
+++|+|++. .+|++++.|++|+|||+++++....+. +...|.+++|+|+|.+|++++
T Consensus 130 sVaf~P~g~--~iLaSgS~DgtIrIWDl~tg~~~~~i~---------------------~~~~V~SlswspdG~lLat~s 186 (568)
T PTZ00420 130 IIDWNPMNY--YIMCSSGFDSFVNIWDIENEKRAFQIN---------------------MPKKLSSLKWNIKGNLLSGTC 186 (568)
T ss_pred EEEECCCCC--eEEEEEeCCCeEEEEECCCCcEEEEEe---------------------cCCcEEEEEECCCCCEEEEEe
Confidence 999999875 356899999999999999887543331 235699999999999999999
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEE-----cCCCcccccccccCCCCCCCCcccccccCCCEEEE
Q 000270 412 SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF-----SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVT 486 (1749)
Q Consensus 412 ~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVaf-----Spdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaS 486 (1749)
.|+.|+|||+++ ...+..+.+|.+.+....+ ++++ .+|++
T Consensus 187 ~D~~IrIwD~Rs---------g~~i~tl~gH~g~~~s~~v~~~~fs~d~--------------------------~~IlT 231 (568)
T PTZ00420 187 VGKHMHIIDPRK---------QEIASSFHIHDGGKNTKNIWIDGLGGDD--------------------------NYILS 231 (568)
T ss_pred cCCEEEEEECCC---------CcEEEEEecccCCceeEEEEeeeEcCCC--------------------------CEEEE
Confidence 999999999976 3356678899887654433 3443 68888
Q ss_pred EeCCC----cEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCccc--ccCCCCCeeEEEEcCCCCEEEEEeC
Q 000270 487 CSRDG----SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR--ILPTPRGVNMIVWSLDNRFVLAAIM 560 (1749)
Q Consensus 487 gS~DG----tIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~--l~~h~~~VtsVafSPDG~~LATGs~ 560 (1749)
++.|+ .|+|||++... .++.. +..+...+......++|.++++|+.
T Consensus 232 tG~d~~~~R~VkLWDlr~~~----------------------------~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG 283 (568)
T PTZ00420 232 TGFSKNNMREMKLWDLKNTT----------------------------SALVTMSIDNASAPLIPHYDESTGLIYLIGKG 283 (568)
T ss_pred EEcCCCCccEEEEEECCCCC----------------------------CceEEEEecCCccceEEeeeCCCCCEEEEEEC
Confidence 88774 79999998521 11111 1112233333444566899999999
Q ss_pred CCeEEEEECCCCceEEEec--CCCCCeEEEEEcC
Q 000270 561 DCRICVWNAADGSLVHSLT--GHTESTYVLDVHP 592 (1749)
Q Consensus 561 DGtI~VWDl~tgklv~tL~--gH~~~VtsLafSP 592 (1749)
|+.|++|++..+.+ +.+. .+..++.+++|.|
T Consensus 284 D~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~P 316 (568)
T PTZ00420 284 DGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLP 316 (568)
T ss_pred CCeEEEEEccCCcE-EeecccccCCCccceEEcc
Confidence 99999999987753 3332 2567788999999
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-23 Score=228.36 Aligned_cols=283 Identities=23% Similarity=0.316 Sum_probs=240.8
Q ss_pred EEEEccCCCCeEEEEEcC---CCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcE
Q 000270 278 LASCRGHEGDITDLAVSS---NNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354 (1749)
Q Consensus 278 l~tL~gHs~~VtsLafSP---Dg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtI 354 (1749)
..++.||+.+|..|+||| +|-+|++++.||.=.+-+-.+|.-+.++.||.+.|+...+..+.. ..++++.|-+-
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~---~aasaaadfta 83 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNAT---RAASAAADFTA 83 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhh---hhhhhcccchh
Confidence 346789999999999986 899999999999998888899999999999999999999988754 67899999999
Q ss_pred EEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCc
Q 000270 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNH 434 (1749)
Q Consensus 355 rIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~ 434 (1749)
++||.-+|..+..+ .|.+.|.+++|+.|..+|++|+.+..+||||+.. +..
T Consensus 84 kvw~a~tgdelhsf---------------------~hkhivk~~af~~ds~~lltgg~ekllrvfdln~--------p~A 134 (334)
T KOG0278|consen 84 KVWDAVTGDELHSF---------------------EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNR--------PKA 134 (334)
T ss_pred hhhhhhhhhhhhhh---------------------hhhheeeeEEecccchhhhccchHHHhhhhhccC--------CCC
Confidence 99999988866654 4778899999999999999999999999999964 344
Q ss_pred ceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCcccccccccc
Q 000270 435 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 514 (1749)
Q Consensus 435 ~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~ 514 (1749)
+...+.+|.+.|..+.|+... +.|++.+.|++||+||.+++...
T Consensus 135 pp~E~~ghtg~Ir~v~wc~eD--------------------------~~iLSSadd~tVRLWD~rTgt~v---------- 178 (334)
T KOG0278|consen 135 PPKEISGHTGGIRTVLWCHED--------------------------KCILSSADDKTVRLWDHRTGTEV---------- 178 (334)
T ss_pred CchhhcCCCCcceeEEEeccC--------------------------ceEEeeccCCceEEEEeccCcEE----------
Confidence 566788999999999998765 68888899999999999985521
Q ss_pred ccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCC
Q 000270 515 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN 594 (1749)
Q Consensus 515 ~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd 594 (1749)
........|+++-++++|++|.++. .+.|.+||..+..++..+.-.. .|.+...+| +
T Consensus 179 --------------------~sL~~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~P~-nV~SASL~P-~ 235 (334)
T KOG0278|consen 179 --------------------QSLEFNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKMPC-NVESASLHP-K 235 (334)
T ss_pred --------------------EEEecCCCCcceeeccCCCEEEEec-CceeEEeccccccceeeccCcc-ccccccccC-C
Confidence 1122345799999999999877664 5789999999999988776543 488999999 6
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceEEEE-eee--------eccCCCEEEEEcCCCeEEEEECCCCcc
Q 000270 595 PRIAMSAGYDGKTIVWDIWEGIPIRIY-EIS--------RFRDGASIILSDDVGQLYILNTGQGES 651 (1749)
Q Consensus 595 ~rlLaSgs~DGtIrVWDl~tGk~l~tl-~~~--------~~sDG~~LAsgd~DG~I~IWdl~tGe~ 651 (1749)
..++++|+.|+.++.||..+|..+..+ .++ ..|||..-|+|+.||+|+||.+..++.
T Consensus 236 k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 236 KEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred CceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 688889999999999999999999887 333 233999999999999999999876543
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-23 Score=256.10 Aligned_cols=299 Identities=18% Similarity=0.286 Sum_probs=205.2
Q ss_pred EEEEEc-cCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEE
Q 000270 277 CLASCR-GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355 (1749)
Q Consensus 277 ~l~tL~-gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIr 355 (1749)
..+.+. .|.+.|++|.||+||+|||+||.||.|+||.+...+... .+.+.-.++.|.-...+. ...+.+..+.+.
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~---~~~~~~~~~~~~~~~~s~-~~p~~s~~~~~~ 333 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMR---VAEGDSSCMYFEYNANSQ-IEPSTSSEEKIS 333 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhc---ccccccchhhhhhhhccc-cCcccccccccc
Confidence 344556 899999999999999999999999999999986543311 111111222221111000 000011111110
Q ss_pred --EEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCC
Q 000270 356 --IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN 433 (1749)
Q Consensus 356 --IWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~ 433 (1749)
.-..+++.......++ .....-...+...+.+|.+.|..|+||.++ +|++++.|.+|++|++.. .
T Consensus 334 ~~~s~~~~~~~s~~~~~p---~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~---------~ 400 (712)
T KOG0283|consen 334 SRTSSSRKGSQSPCVLLP---LKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGR---------K 400 (712)
T ss_pred ccccccccccCCccccCC---CccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCC---------c
Confidence 0011111111110000 000111223455678899999999999775 899999999999999954 3
Q ss_pred cceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccc
Q 000270 434 HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQA 513 (1749)
Q Consensus 434 ~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~ 513 (1749)
.++.. -.|.+.|+||+|+|.. .++|++|+-||.||||++...+ +..|.
T Consensus 401 ~CL~~-F~HndfVTcVaFnPvD-------------------------DryFiSGSLD~KvRiWsI~d~~----Vv~W~-- 448 (712)
T KOG0283|consen 401 ECLKV-FSHNDFVTCVAFNPVD-------------------------DRYFISGSLDGKVRLWSISDKK----VVDWN-- 448 (712)
T ss_pred ceeeE-EecCCeeEEEEecccC-------------------------CCcEeecccccceEEeecCcCe----eEeeh--
Confidence 44544 4799999999999965 4899999999999999987533 12221
Q ss_pred cccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEec--CC------CCCe
Q 000270 514 YHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT--GH------TEST 585 (1749)
Q Consensus 514 ~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~--gH------~~~V 585 (1749)
....-|++++|+|||++.++|+.+|.+++|++...+++..+. .| ...|
T Consensus 449 ------------------------Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rI 504 (712)
T KOG0283|consen 449 ------------------------DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRI 504 (712)
T ss_pred ------------------------hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCcee
Confidence 123569999999999999999999999999998877765442 11 2279
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEeee---------ec-cCCCEEEEEcCCCeEEEEECCC
Q 000270 586 YVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS---------RF-RDGASIILSDDVGQLYILNTGQ 648 (1749)
Q Consensus 586 tsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~---------~~-sDG~~LAsgd~DG~I~IWdl~t 648 (1749)
+++.|.|.+..-|+..+.|..|+|+|..+-.++..|.+. .| .||++|+++++|..|+||++..
T Consensus 505 TG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 505 TGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred eeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 999999966655556789999999999888888877743 12 2999999999999999999854
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-23 Score=225.63 Aligned_cols=274 Identities=19% Similarity=0.308 Sum_probs=217.7
Q ss_pred EEEEEcC--CCcEEEEEe------CCCeEEEEECCCCceEEEec--CCCCceEEEEeccCCCcceEEEeecCCCcEEEEE
Q 000270 289 TDLAVSS--NNALVASAS------NDCIIRVWRLPDGLPISVLR--GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358 (1749)
Q Consensus 289 tsLafSP--Dg~lLASGS------~DGtIrVWDl~tgk~l~tL~--gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWD 358 (1749)
.++.||| ++++.++.+ ..|.+.|-++..++-+..+. .-...+..++|++... ..+++++.||+++|||
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e--~~~~~a~GDGSLrl~d 89 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHE--NQVIAASGDGSLRLFD 89 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCc--ceEEEEecCceEEEec
Confidence 5788999 455443332 35899999987555444433 2456799999999865 4899999999999999
Q ss_pred cCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcC-CCCEEEEecCCCcEEEEeCCCCCCCCCCCCCccee
Q 000270 359 ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID 437 (1749)
Q Consensus 359 l~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSP-DG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~ 437 (1749)
+.... .+......|...|.++.|++ .+..+++++.|++|++|+... ...+.
T Consensus 90 ~~~~s-------------------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r---------~~Sv~ 141 (311)
T KOG0277|consen 90 LTMPS-------------------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR---------PNSVQ 141 (311)
T ss_pred cCCCC-------------------cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC---------CcceE
Confidence 54222 12334567889999999998 566788899999999999854 44678
Q ss_pred eecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccC
Q 000270 438 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLK 517 (1749)
Q Consensus 438 ~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~ 517 (1749)
++.+|...|+..+|+|.. ++.|+++|.||++++||++.
T Consensus 142 Tf~gh~~~Iy~a~~sp~~-------------------------~nlfas~Sgd~~l~lwdvr~----------------- 179 (311)
T KOG0277|consen 142 TFNGHNSCIYQAAFSPHI-------------------------PNLFASASGDGTLRLWDVRS----------------- 179 (311)
T ss_pred eecCCccEEEEEecCCCC-------------------------CCeEEEccCCceEEEEEecC-----------------
Confidence 899999999999999965 58999999999999999884
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCC-ceEEEecCCCCCeEEEEEcCCCC
Q 000270 518 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL-DNRFVLAAIMDCRICVWNAADG-SLVHSLTGHTESTYVLDVHPFNP 595 (1749)
Q Consensus 518 v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSP-DG~~LATGs~DGtI~VWDl~tg-klv~tL~gH~~~VtsLafSPdd~ 595 (1749)
.+..+ .+..|...|.++.|+. +...|+||+.|+.|++||++.- .++.+|.||.-.|..|.|||...
T Consensus 180 -----------~gk~~-~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~ 247 (311)
T KOG0277|consen 180 -----------PGKFM-SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHA 247 (311)
T ss_pred -----------CCcee-EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchh
Confidence 12222 3677888999999997 5568899999999999999875 46889999999999999999888
Q ss_pred cEEEEEeCCCcEEEEeCCCCc-eEEEEeee--------ecc-CCCEEEEEcCCCeEEEEEC
Q 000270 596 RIAMSAGYDGKTIVWDIWEGI-PIRIYEIS--------RFR-DGASIILSDDVGQLYILNT 646 (1749)
Q Consensus 596 rlLaSgs~DGtIrVWDl~tGk-~l~tl~~~--------~~s-DG~~LAsgd~DG~I~IWdl 646 (1749)
.+|+|++.|-+++|||...+. ++.++..| +.. ++.++|+++-|+.++||+.
T Consensus 248 ~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 248 SLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 999999999999999987543 33333322 112 8999999999999999984
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.7e-23 Score=259.04 Aligned_cols=305 Identities=20% Similarity=0.270 Sum_probs=237.6
Q ss_pred CCCCeEEEEEcCCCcEEEEEe--CCCeEEEEECCC------------CceEEEecCCCCceEEEEeccCCCcceEEEeec
Q 000270 284 HEGDITDLAVSSNNALVASAS--NDCIIRVWRLPD------------GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS 349 (1749)
Q Consensus 284 Hs~~VtsLafSPDg~lLASGS--~DGtIrVWDl~t------------gk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS 349 (1749)
+...|.+++.+||+..+|||+ .||.++||+... .+.+..+..|.+.|+|+.|+|||. +||+|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~---~lAsGS 88 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS---YLASGS 88 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC---eEeecc
Confidence 355699999999999999999 899999998642 245677788999999999999998 999999
Q ss_pred CCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCC
Q 000270 350 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDS 429 (1749)
Q Consensus 350 ~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s 429 (1749)
+|+.|.||..... ...... ...........+.......+|...|..++|+|++.+||+++.|++|.||+..+
T Consensus 89 DD~~v~iW~~~~~-~~~~~f-gs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t------ 160 (942)
T KOG0973|consen 89 DDRLVMIWERAEI-GSGTVF-GSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKT------ 160 (942)
T ss_pred CcceEEEeeeccc-CCcccc-cccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccc------
Confidence 9999999998741 111111 00001111223334455677999999999999999999999999999999965
Q ss_pred CCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccc
Q 000270 430 DQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR 509 (1749)
Q Consensus 430 ~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~ 509 (1749)
...+..+.+|.+.|..+.|.|-| ++|++-+.|++|+||++.+......+.
T Consensus 161 ---F~~~~vl~~H~s~VKGvs~DP~G--------------------------ky~ASqsdDrtikvwrt~dw~i~k~It- 210 (942)
T KOG0973|consen 161 ---FELLKVLRGHQSLVKGVSWDPIG--------------------------KYFASQSDDRTLKVWRTSDWGIEKSIT- 210 (942)
T ss_pred ---ceeeeeeecccccccceEECCcc--------------------------CeeeeecCCceEEEEEcccceeeEeec-
Confidence 46788999999999999999987 899999999999999866422111000
Q ss_pred cccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEe----CCCeEEEEECCCCceEEEecCCCCCe
Q 000270 510 WTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI----MDCRICVWNAADGSLVHSLTGHTEST 585 (1749)
Q Consensus 510 ~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs----~DGtI~VWDl~tgklv~tL~gH~~~V 585 (1749)
.+.. -.+...-+..+.|||||.+|+++- .-.++.|.+-.+.+.-..|-||.+++
T Consensus 211 ---------------------~pf~-~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~ 268 (942)
T KOG0973|consen 211 ---------------------KPFE-ESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPV 268 (942)
T ss_pred ---------------------cchh-hCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCce
Confidence 0000 011223477899999999999864 23479999998889899999999999
Q ss_pred EEEEEcCC----CCc------------EEEEEeCCCcEEEEeCCCCceEEEEe---------eeeccCCCEEEEEcCCCe
Q 000270 586 YVLDVHPF----NPR------------IAMSAGYDGKTIVWDIWEGIPIRIYE---------ISRFRDGASIILSDDVGQ 640 (1749)
Q Consensus 586 tsLafSPd----d~r------------lLaSgs~DGtIrVWDl~tGk~l~tl~---------~~~~sDG~~LAsgd~DG~ 640 (1749)
.++.|+|. ... ++|+|+.|++|-||.....+++..+. ..|.+||..|.+++.||.
T Consensus 269 evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGt 348 (942)
T KOG0973|consen 269 EVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGT 348 (942)
T ss_pred EEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCe
Confidence 99999982 111 78999999999999998887775432 346779999999999999
Q ss_pred EEEEECCCCcc
Q 000270 641 LYILNTGQGES 651 (1749)
Q Consensus 641 I~IWdl~tGe~ 651 (1749)
|.++.+...+.
T Consensus 349 V~~i~Fee~El 359 (942)
T KOG0973|consen 349 VALIHFEEKEL 359 (942)
T ss_pred EEEEEcchHHh
Confidence 99999876543
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=257.96 Aligned_cols=286 Identities=18% Similarity=0.290 Sum_probs=228.3
Q ss_pred CCCEEEEEECCCCCEEEEEe--CCcEEEEEECCC------------CeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCe
Q 000270 243 RNAVYCAIFDRSGRYVITGS--DDRLVKIWSMET------------AYCLASCRGHEGDITDLAVSSNNALVASASNDCI 308 (1749)
Q Consensus 243 ~~~Vt~VaFSPDG~~LATGS--~DGtVrIWDl~T------------g~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGt 308 (1749)
...|++|..+|||..+|||+ .||.++||+.+. .+.+.+...|.+.|.|+.|++||++||+||.|+.
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~ 92 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL 92 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence 44699999999999999999 899999998752 2345667789999999999999999999999999
Q ss_pred EEEEECCC------------------CceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeec
Q 000270 309 IRVWRLPD------------------GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYI 370 (1749)
Q Consensus 309 IrVWDl~t------------------gk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~ 370 (1749)
|.||.... .+++..+.+|.+.|..++|+|++. +|++++.|++|.||+..+...+..+
T Consensus 93 v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~---~lvS~s~DnsViiwn~~tF~~~~vl-- 167 (942)
T KOG0973|consen 93 VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS---LLVSVSLDNSVIIWNAKTFELLKVL-- 167 (942)
T ss_pred EEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc---EEEEecccceEEEEccccceeeeee--
Confidence 99998762 136788999999999999999987 9999999999999999988666555
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecC------CCC
Q 000270 371 PRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG------HEN 444 (1749)
Q Consensus 371 ~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~g------H~~ 444 (1749)
.+|...|..+.|.|-|++||+-+.|++|+||++..- .......+ -..
T Consensus 168 ------------------~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw---------~i~k~It~pf~~~~~~T 220 (942)
T KOG0973|consen 168 ------------------RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDW---------GIEKSITKPFEESPLTT 220 (942)
T ss_pred ------------------ecccccccceEECCccCeeeeecCCceEEEEEcccc---------eeeEeeccchhhCCCcc
Confidence 468899999999999999999999999999997431 11222222 234
Q ss_pred CeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeC----CCcEEEEecCCCCCCccccccccccccCCCC
Q 000270 445 DVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR----DGSAIIWIPRSRRSHPKAARWTQAYHLKVPP 520 (1749)
Q Consensus 445 ~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~----DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~ 520 (1749)
.+..+.|+|+| ++|++.-. --++.|.+-.+ |
T Consensus 221 ~f~RlSWSPDG--------------------------~~las~nA~n~~~~~~~IieR~t---------W---------- 255 (942)
T KOG0973|consen 221 FFLRLSWSPDG--------------------------HHLASPNAVNGGKSTIAIIERGT---------W---------- 255 (942)
T ss_pred eeeecccCCCc--------------------------CeecchhhccCCcceeEEEecCC---------c----------
Confidence 57788999998 66665421 22344443322 1
Q ss_pred CCCCCCCCCCCCcccccCCCCCeeEEEEcCC-------------CC----EEEEEeCCCeEEEEECCCCceEEEec-CCC
Q 000270 521 PPMPPQPPRGGPRQRILPTPRGVNMIVWSLD-------------NR----FVLAAIMDCRICVWNAADGSLVHSLT-GHT 582 (1749)
Q Consensus 521 ~~~~~~~~~g~~i~~l~~h~~~VtsVafSPD-------------G~----~LATGs~DGtI~VWDl~tgklv~tL~-gH~ 582 (1749)
.....+.+|..++.++.|+|. +. .+|+|+.|++|-||.....+++.... -..
T Consensus 256 ----------k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~ 325 (942)
T KOG0973|consen 256 ----------KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFN 325 (942)
T ss_pred ----------eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhc
Confidence 123457889999999999981 11 67899999999999998888776543 235
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 000270 583 ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI 616 (1749)
Q Consensus 583 ~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk 616 (1749)
..|.+++|+| +|..|+.++.||+|.+..+...+
T Consensus 326 ~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 326 KSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CceeeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence 6799999999 77888889999999999987654
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-22 Score=224.55 Aligned_cols=304 Identities=19% Similarity=0.265 Sum_probs=220.2
Q ss_pred EEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEE--EEEc--cCCCCeEEEEEcCCCcE-EEEEeCCCeEE
Q 000270 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCL--ASCR--GHEGDITDLAVSSNNAL-VASASNDCIIR 310 (1749)
Q Consensus 236 i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l--~tL~--gHs~~VtsLafSPDg~l-LASGS~DGtIr 310 (1749)
+..|+||.+.|+|++|+.||++|||++.|++|+||++...... +.++ -.-+.-+.++|+||-+- ++++-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4578999999999999999999999999999999999763211 1111 01234678999998764 44455566899
Q ss_pred EEECCC---CceEE---------EecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCccc
Q 000270 311 VWRLPD---GLPIS---------VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA 378 (1749)
Q Consensus 311 VWDl~t---gk~l~---------tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~ 378 (1749)
+|.+.. |.... .-+.|.-.|..+-....+. +|++++.|..|.+|++. |+.+..+..
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k---~imsas~dt~i~lw~lk-Gq~L~~idt-------- 226 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK---YIMSASLDTKICLWDLK-GQLLQSIDT-------- 226 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCce---EEEEecCCCcEEEEecC-Cceeeeecc--------
Confidence 997632 22111 1123556666666666555 99999999999999998 777666532
Q ss_pred CCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCccc
Q 000270 379 GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVAS 458 (1749)
Q Consensus 379 g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as 458 (1749)
....-+..+.||+|++||+++..--|+||.+.-.+ ....+....+..+.||...|..++|+++.
T Consensus 227 ------------nq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~k-dG~fqev~rvf~LkGH~saV~~~aFsn~S--- 290 (420)
T KOG2096|consen 227 ------------NQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTK-DGTFQEVKRVFSLKGHQSAVLAAAFSNSS--- 290 (420)
T ss_pred ------------ccccccceeeCCCCcEEEEecCCCCceEEEEEecc-CcchhhhhhhheeccchhheeeeeeCCCc---
Confidence 22334568899999999999999999999985322 23344556677899999999999999987
Q ss_pred ccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccC
Q 000270 459 RFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 538 (1749)
Q Consensus 459 ~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~ 538 (1749)
..+++.+.||+++|||+.-...... ..+.++ .++.. +..
T Consensus 291 -----------------------~r~vtvSkDG~wriwdtdVrY~~~q-----Dpk~Lk------------~g~~p-l~a 329 (420)
T KOG2096|consen 291 -----------------------TRAVTVSKDGKWRIWDTDVRYEAGQ-----DPKILK------------EGSAP-LHA 329 (420)
T ss_pred -----------------------ceeEEEecCCcEEEeeccceEecCC-----CchHhh------------cCCcc-hhh
Confidence 7999999999999999874221110 001111 11111 111
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 000270 539 TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT-GHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1749)
Q Consensus 539 h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~-gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWD 611 (1749)
.......++++|.|+.||++. ...|++|..++|+..-++. .|...|.+|+|++ ++++++|+| |..+++..
T Consensus 330 ag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 330 AGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSS-DGKYIATCG-DRYVRVIR 400 (420)
T ss_pred cCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecC-CCcEEeeec-ceeeeeec
Confidence 222334899999999988765 4679999999998887775 6899999999999 788998887 66777764
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8e-23 Score=227.39 Aligned_cols=287 Identities=17% Similarity=0.264 Sum_probs=224.8
Q ss_pred EEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCC------------C------ceEEEecCCCCceEEEEeccCCC
Q 000270 279 ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPD------------G------LPISVLRGHTAAVTAIAFSPRPG 340 (1749)
Q Consensus 279 ~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~t------------g------k~l~tL~gHs~~VtsIaFSPdg~ 340 (1749)
..+..|.+++.+.+|++||.++|+|+.|..|+|.|++. | -.+++|-.|...|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 44667999999999999999999999999999999861 1 25678889999999999999876
Q ss_pred cceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEe
Q 000270 341 SVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420 (1749)
Q Consensus 341 ~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWD 420 (1749)
.|++|+.|++|++||+........+.. ......|.++.|+|.|.+|++|..-.++++||
T Consensus 186 ---ILiS~srD~tvKlFDfsK~saKrA~K~------------------~qd~~~vrsiSfHPsGefllvgTdHp~~rlYd 244 (430)
T KOG0640|consen 186 ---ILISGSRDNTVKLFDFSKTSAKRAFKV------------------FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYD 244 (430)
T ss_pred ---eEEeccCCCeEEEEecccHHHHHHHHH------------------hhccceeeeEeecCCCceEEEecCCCceeEEe
Confidence 999999999999999875433222211 12356799999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCC
Q 000270 421 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 500 (1749)
Q Consensus 421 l~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s 500 (1749)
+.+.++..+.. .-.+|.+.|++|.+++.+ .+.++++.||.|+|||--+
T Consensus 245 v~T~Qcfvsan------Pd~qht~ai~~V~Ys~t~--------------------------~lYvTaSkDG~IklwDGVS 292 (430)
T KOG0640|consen 245 VNTYQCFVSAN------PDDQHTGAITQVRYSSTG--------------------------SLYVTASKDGAIKLWDGVS 292 (430)
T ss_pred ccceeEeeecC------cccccccceeEEEecCCc--------------------------cEEEEeccCCcEEeecccc
Confidence 98754322222 235799999999999987 7999999999999999776
Q ss_pred CCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCC-CCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEec
Q 000270 501 RRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP-RGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT 579 (1749)
Q Consensus 501 ~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~-~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~ 579 (1749)
++++..+. ..|. ..|++..|..+|+||++.+.|..|++|.+.+|+++.++.
T Consensus 293 ~rCv~t~~----------------------------~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Yt 344 (430)
T KOG0640|consen 293 NRCVRTIG----------------------------NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYT 344 (430)
T ss_pred HHHHHHHH----------------------------hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEe
Confidence 55433221 1233 459999999999999999999999999999999999987
Q ss_pred CCC--C---CeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEeee---------eccCCCEEEEEcCCCeEEEEE
Q 000270 580 GHT--E---STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS---------RFRDGASIILSDDVGQLYILN 645 (1749)
Q Consensus 580 gH~--~---~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~---------~~sDG~~LAsgd~DG~I~IWd 645 (1749)
|-. + .-+...|......+|.---..+.+.-||..++..+..+..+ +.|.+.-++++++|-.+++|-
T Consensus 345 GAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 345 GAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred cCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 641 1 12334455533344433334577899999998877776654 345788889999999999995
Q ss_pred C
Q 000270 646 T 646 (1749)
Q Consensus 646 l 646 (1749)
-
T Consensus 425 r 425 (430)
T KOG0640|consen 425 R 425 (430)
T ss_pred e
Confidence 3
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-22 Score=223.15 Aligned_cols=288 Identities=19% Similarity=0.278 Sum_probs=218.6
Q ss_pred cCCCCEEEEEECC-CCCEEEEEeCCcEEEEEECCC-CeEE-EEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCC
Q 000270 241 GHRNAVYCAIFDR-SGRYVITGSDDRLVKIWSMET-AYCL-ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG 317 (1749)
Q Consensus 241 GH~~~Vt~VaFSP-DG~~LATGS~DGtVrIWDl~T-g~~l-~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tg 317 (1749)
...+.|.+|+||| ...+|+.||.||+||+|+++. |..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 3467899999999 556777999999999999976 4433 345579999999999999999999999999999999999
Q ss_pred ceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEE
Q 000270 318 LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFC 397 (1749)
Q Consensus 318 k~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~ 397 (1749)
+ +..+..|.++|.++.|-+.... ..|++|+.|.+|++||.+....+.++.+| ..+++
T Consensus 105 Q-~~~v~~Hd~pvkt~~wv~~~~~-~cl~TGSWDKTlKfWD~R~~~pv~t~~LP---------------------eRvYa 161 (347)
T KOG0647|consen 105 Q-VSQVAAHDAPVKTCHWVPGMNY-QCLVTGSWDKTLKFWDTRSSNPVATLQLP---------------------ERVYA 161 (347)
T ss_pred C-eeeeeecccceeEEEEecCCCc-ceeEecccccceeecccCCCCeeeeeecc---------------------ceeee
Confidence 5 5566679999999999987643 37899999999999999988877776543 23555
Q ss_pred EEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCccccc
Q 000270 398 CAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNS 477 (1749)
Q Consensus 398 LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s 477 (1749)
+.. -..+++++..+..|.+|++..+... .........-.+.||+...+.
T Consensus 162 ~Dv--~~pm~vVata~r~i~vynL~n~~te-------~k~~~SpLk~Q~R~va~f~d~---------------------- 210 (347)
T KOG0647|consen 162 ADV--LYPMAVVATAERHIAVYNLENPPTE-------FKRIESPLKWQTRCVACFQDK---------------------- 210 (347)
T ss_pred hhc--cCceeEEEecCCcEEEEEcCCCcch-------hhhhcCcccceeeEEEEEecC----------------------
Confidence 544 2347888889999999999654321 111112234467888887765
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEE
Q 000270 478 WFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 557 (1749)
Q Consensus 478 ~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LAT 557 (1749)
+..+.|+..|.+.|..+..+... ..+.++..... . .....-..|+.|+|+|.-..|+|
T Consensus 211 ----~~~alGsiEGrv~iq~id~~~~~-------~nFtFkCHR~~--------~---~~~~~VYaVNsi~FhP~hgtlvT 268 (347)
T KOG0647|consen 211 ----DGFALGSIEGRVAIQYIDDPNPK-------DNFTFKCHRST--------N---SVNDDVYAVNSIAFHPVHGTLVT 268 (347)
T ss_pred ----CceEeeeecceEEEEecCCCCcc-------CceeEEEeccC--------C---CCCCceEEecceEeecccceEEE
Confidence 56799999999999988764321 01111100000 0 01112346899999999999999
Q ss_pred EeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCC
Q 000270 558 AIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYD 604 (1749)
Q Consensus 558 Gs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~D 604 (1749)
++.||++.+||-.....+.+...|..+|++.+|+.++..++++.|.|
T Consensus 269 aGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 269 AGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred ecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 99999999999988888889999999999999999666666666665
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=209.06 Aligned_cols=301 Identities=22% Similarity=0.344 Sum_probs=233.8
Q ss_pred ccccccccccccCcccccCCCcchhhhhccccC-CC----ccc-cccceEEEEccCCCCEEEEEECCCCCEEEEEeCCcE
Q 000270 193 DQVRGLGLREIGGGFTRHHRAPSIRAACYAIAK-PS----TMV-QKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRL 266 (1749)
Q Consensus 193 ~~V~~l~~r~~gg~~~~~~~~~~l~~~~~~~a~-p~----~~~-~~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGt 266 (1749)
..|+.+.|.+.|+.++.......++...|.... +- ... ...-..++-+.|.+.|+|++|+|+|.+||||+.|.+
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ 112 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKT 112 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCce
Confidence 346778888888877766666666666554332 21 111 112345667889999999999999999999999999
Q ss_pred EEEEECCCCeEE-----EEEccCCCCeEEEEEcCC----CcEEEEEeC-CCeEEEEECCCCceEEEecCCCCceEEEEec
Q 000270 267 VKIWSMETAYCL-----ASCRGHEGDITDLAVSSN----NALVASASN-DCIIRVWRLPDGLPISVLRGHTAAVTAIAFS 336 (1749)
Q Consensus 267 VrIWDl~Tg~~l-----~tL~gHs~~VtsLafSPD----g~lLASGS~-DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFS 336 (1749)
|++.-.....+. ..|.-|.+.|.+++|..+ +.+|++++. |..|.+-|..+|+....+.+|++-|.++--
T Consensus 113 ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalys- 191 (350)
T KOG0641|consen 113 IKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYS- 191 (350)
T ss_pred EEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEE-
Confidence 999766433222 346679999999999753 568888764 788999999999999999999999988742
Q ss_pred cCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcE
Q 000270 337 PRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLA 416 (1749)
Q Consensus 337 Pdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtV 416 (1749)
-++- .+++|+.|.+|++||++-..++..+...... ..-....|.+++..|.|++|++|-.|...
T Consensus 192 wn~~---m~~sgsqdktirfwdlrv~~~v~~l~~~~~~-------------~glessavaav~vdpsgrll~sg~~dssc 255 (350)
T KOG0641|consen 192 WNGA---MFASGSQDKTIRFWDLRVNSCVNTLDNDFHD-------------GGLESSAVAAVAVDPSGRLLASGHADSSC 255 (350)
T ss_pred ecCc---EEEccCCCceEEEEeeeccceeeeccCcccC-------------CCcccceeEEEEECCCcceeeeccCCCce
Confidence 2233 8999999999999999988777665321111 11234679999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEE
Q 000270 417 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 496 (1749)
Q Consensus 417 rIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIW 496 (1749)
.+||++. +..++.+..|...|.||.|+|.. .++++|+.|..|++-
T Consensus 256 ~lydirg---------~r~iq~f~phsadir~vrfsp~a--------------------------~yllt~syd~~iklt 300 (350)
T KOG0641|consen 256 MLYDIRG---------GRMIQRFHPHSADIRCVRFSPGA--------------------------HYLLTCSYDMKIKLT 300 (350)
T ss_pred EEEEeeC---------CceeeeeCCCccceeEEEeCCCc--------------------------eEEEEecccceEEEe
Confidence 9999975 45678899999999999999976 799999999999999
Q ss_pred ecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 000270 497 IPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAA 570 (1749)
Q Consensus 497 Dl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~ 570 (1749)
|+...- ...-++.....|...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus 301 dlqgdl-------------------------a~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 301 DLQGDL-------------------------AHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ecccch-------------------------hhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 887421 0112334455688888999999999999999999999999763
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.6e-22 Score=221.84 Aligned_cols=247 Identities=18% Similarity=0.267 Sum_probs=203.1
Q ss_pred cceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCc--EEEEEeCCCeEE
Q 000270 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA--LVASASNDCIIR 310 (1749)
Q Consensus 233 ~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~--lLASGS~DGtIr 310 (1749)
+..+..+..|.++|+|||.+ |.|+|+||.|-+|+|||+.+...+..+..|.+.|+++.|.+.-. .|++|+.||.|.
T Consensus 33 l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 33 LKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred eeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence 34566788999999999996 89999999999999999999999999999999999999999765 899999999999
Q ss_pred EEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCC
Q 000270 311 VWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGP 390 (1749)
Q Consensus 311 VWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~ 390 (1749)
+|++....++..+++|.+.|+.|+.+|.++ +.++.+.|+.+++||+-+|+....+.+
T Consensus 111 iw~~~~W~~~~slK~H~~~Vt~lsiHPS~K---LALsVg~D~~lr~WNLV~Gr~a~v~~L-------------------- 167 (362)
T KOG0294|consen 111 IWRVGSWELLKSLKAHKGQVTDLSIHPSGK---LALSVGGDQVLRTWNLVRGRVAFVLNL-------------------- 167 (362)
T ss_pred EEEcCCeEEeeeecccccccceeEecCCCc---eEEEEcCCceeeeehhhcCccceeecc--------------------
Confidence 999999999999999999999999999987 788999999999999998876554432
Q ss_pred CCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCC
Q 000270 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDS 470 (1749)
Q Consensus 391 h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~ 470 (1749)
....+.+.|+|.|.+|++++.+ .|-||.+.+... .........+.|+.|...
T Consensus 168 -~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v----------~~~i~~~~r~l~~~~l~~---------------- 219 (362)
T KOG0294|consen 168 -KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASV----------FREIENPKRILCATFLDG---------------- 219 (362)
T ss_pred -CCcceeeEEcCCCCEEEEEecc-EEEEEecccHhH----------hhhhhccccceeeeecCC----------------
Confidence 1223449999999999888765 577888854221 111111234556666543
Q ss_pred CCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEE--
Q 000270 471 TPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW-- 548 (1749)
Q Consensus 471 ~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVaf-- 548 (1749)
..|++|+.|+.|.+||..+ ..+...+.+|...|-.+.+
T Consensus 220 -----------~~L~vG~d~~~i~~~D~ds-----------------------------~~~~~~~~AH~~RVK~i~~~~ 259 (362)
T KOG0294|consen 220 -----------SELLVGGDNEWISLKDTDS-----------------------------DTPLTEFLAHENRVKDIASYT 259 (362)
T ss_pred -----------ceEEEecCCceEEEeccCC-----------------------------CccceeeecchhheeeeEEEe
Confidence 6899999999999999875 2344567789999998884
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCC
Q 000270 549 SLDNRFVLAAIMDCRICVWNAADG 572 (1749)
Q Consensus 549 SPDG~~LATGs~DGtI~VWDl~tg 572 (1749)
.|++.+|++++.||.|+|||+...
T Consensus 260 ~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 260 NPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cCCceEEEEeccCceEEEEEcccc
Confidence 467899999999999999999765
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.3e-21 Score=223.45 Aligned_cols=393 Identities=17% Similarity=0.228 Sum_probs=280.5
Q ss_pred eEEEEccCCCCEEEEEECCCCCEEEEEeCCc--------EEEEEECCCCeEEEEEccCCCCeEEEEEcC--CCcEEEEE-
Q 000270 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDR--------LVKIWSMETAYCLASCRGHEGDITDLAVSS--NNALVASA- 303 (1749)
Q Consensus 235 ~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DG--------tVrIWDl~Tg~~l~tL~gHs~~VtsLafSP--Dg~lLASG- 303 (1749)
..+.+.||...|-|++.+||.-.+|+|-.-| .|+|||..+...+..+-.....|+|++|++ .|.+|+..
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD 175 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVD 175 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEec
Confidence 4466889999999999999998899875544 599999988888888887888999999998 45566554
Q ss_pred -eCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCC
Q 000270 304 -SNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 382 (1749)
Q Consensus 304 -S~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~ 382 (1749)
+.+..+.|||++.+......+.....|....|+|.+. -|+.....|.+.+|+++.+.+..+.-+-.
T Consensus 176 ~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~---nliit~Gk~H~~Fw~~~~~~l~k~~~~fe---------- 242 (626)
T KOG2106|consen 176 DSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDP---NLIITCGKGHLYFWTLRGGSLVKRQGIFE---------- 242 (626)
T ss_pred CCCccccchhhchhhhccCcceeccceEEEEEeccCCC---cEEEEeCCceEEEEEccCCceEEEeeccc----------
Confidence 4456799999998887777777778899999999876 44555556889999999887666542211
Q ss_pred CCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCccccccc
Q 000270 383 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSL 462 (1749)
Q Consensus 383 ~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~ 462 (1749)
......|.|++|.++|. +++|..+|.|.||+..+ .+.......|.+.|.+++.-.+|
T Consensus 243 ------k~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~---------~~~~k~~~aH~ggv~~L~~lr~G------- 299 (626)
T KOG2106|consen 243 ------KREKKFVLCVTFLENGD-VITGDSGGNILIWSKGT---------NRISKQVHAHDGGVFSLCMLRDG------- 299 (626)
T ss_pred ------cccceEEEEEEEcCCCC-EEeecCCceEEEEeCCC---------ceEEeEeeecCCceEEEEEecCc-------
Confidence 12235699999999996 77899999999999854 22334444999999999998876
Q ss_pred ccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCC--ccccccc--cc-------cccCCCCCCCCCCCCCCC
Q 000270 463 ADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH--PKAARWT--QA-------YHLKVPPPPMPPQPPRGG 531 (1749)
Q Consensus 463 ~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~--~~~~~~~--~~-------~~l~v~~~~~~~~~~~g~ 531 (1749)
.|++|+.|..|..||-.-.+.. ....... +. +-+...............
T Consensus 300 --------------------tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~ 359 (626)
T KOG2106|consen 300 --------------------TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENG 359 (626)
T ss_pred --------------------cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCC
Confidence 7788999999999983321110 0000000 00 000000000000111222
Q ss_pred CcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 000270 532 PRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1749)
Q Consensus 532 ~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWD 611 (1749)
......+|......++.+|+...++|++.|+.+++|+ ..+++.+.. -..++.++.|+|.+ .++.|...|...|.|
T Consensus 360 f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d 434 (626)
T KOG2106|consen 360 FTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG--VVAVGTATGRWFVLD 434 (626)
T ss_pred ceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc--eEEEeeccceEEEEe
Confidence 3334567888899999999999999999999999999 555555433 24568899999954 888899999999999
Q ss_pred CCCCceEEEEee-------eeccCCCEEEEEcCCCeEEEEECCCCccc--------ccccceeeecCCCcceeEcCCCc-
Q 000270 612 IWEGIPIRIYEI-------SRFRDGASIILSDDVGQLYILNTGQGESQ--------KDAKYDQFFLGDYRPLVQDTYGN- 675 (1749)
Q Consensus 612 l~tGk~l~tl~~-------~~~sDG~~LAsgd~DG~I~IWdl~tGe~~--------k~~~~~~fFs~D~r~Lv~d~~G~- 675 (1749)
+++...+..-.. ...+||.+||+|+.|+.|+||.+..+... ......+-|+.|.+.|+..+.++
T Consensus 435 ~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~e 514 (626)
T KOG2106|consen 435 TETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYE 514 (626)
T ss_pred cccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceE
Confidence 998665543322 12349999999999999999998654322 22234578999999887776665
Q ss_pred EEecccccCCCCC
Q 000270 676 VLDQETQLAPHRR 688 (1749)
Q Consensus 676 Vld~~tq~~Phl~ 688 (1749)
+|-.....++.+.
T Consensus 515 iLyW~~~~~~~~t 527 (626)
T KOG2106|consen 515 ILYWKPSECKQIT 527 (626)
T ss_pred EEEEccccCcccc
Confidence 3333333344333
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-21 Score=243.67 Aligned_cols=208 Identities=15% Similarity=0.276 Sum_probs=169.1
Q ss_pred EEccCCCCEEEEEECC-CCCEEEEEeCCcEEEEEECCCC-------eEEEEEccCCCCeEEEEEcCCC-cEEEEEeCCCe
Q 000270 238 RVRGHRNAVYCAIFDR-SGRYVITGSDDRLVKIWSMETA-------YCLASCRGHEGDITDLAVSSNN-ALVASASNDCI 308 (1749)
Q Consensus 238 tL~GH~~~Vt~VaFSP-DG~~LATGS~DGtVrIWDl~Tg-------~~l~tL~gHs~~VtsLafSPDg-~lLASGS~DGt 308 (1749)
.|.||.+.|++++|+| ++++||+|+.||+|+|||+.++ ..+..+.+|...|.+|+|+|++ .+|++|+.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4789999999999999 8899999999999999999765 3567889999999999999975 69999999999
Q ss_pred EEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCC
Q 000270 309 IRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 388 (1749)
Q Consensus 309 IrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~ 388 (1749)
|+|||+.+++.+..+.+|...|.+++|+|++. +|++++.||+|+|||+++++.+..+.
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~---lLatgs~Dg~IrIwD~rsg~~v~tl~------------------- 207 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGS---LLCTTSKDKKLNIIDPRDGTIVSSVE------------------- 207 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCCC---EEEEecCCCEEEEEECCCCcEEEEEe-------------------
Confidence 99999999999999999999999999999987 89999999999999999887655442
Q ss_pred CCCCC-ceEEEEEcCCCCEEEEec----CCCcEEEEeCCCCCCCCCCCCCcceeeecCC-CCCeEEEEEcCCCccccccc
Q 000270 389 GPQSH-QIFCCAFNANGTVFVTGS----SDTLARVWNACKPNTDDSDQPNHEIDVLSGH-ENDVNYVQFSGCAVASRFSL 462 (1749)
Q Consensus 389 ~~h~~-~Vt~LafSPDG~~LaSGs----~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH-~~~V~sVafSpdg~as~~s~ 462 (1749)
.|.+ .+..+.|.+++..|++++ .|+.|++||+++.. ..+.....+ ...+....|++++
T Consensus 208 -~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~--------~p~~~~~~d~~~~~~~~~~d~d~------- 271 (493)
T PTZ00421 208 -AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA--------SPYSTVDLDQSSALFIPFFDEDT------- 271 (493)
T ss_pred -cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC--------CceeEeccCCCCceEEEEEcCCC-------
Confidence 2332 245678888877777654 47899999997532 122222222 3345556677776
Q ss_pred ccCCCCCCCCcccccccCCCEEEEEe-CCCcEEEEecCCCC
Q 000270 463 ADSSKEDSTPKFKNSWFCHDNIVTCS-RDGSAIIWIPRSRR 502 (1749)
Q Consensus 463 ~~~~~~~~~~~~~~s~~~~~~LaSgS-~DGtIrIWDl~s~k 502 (1749)
.+|++++ .||.|++||+.+++
T Consensus 272 -------------------~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 272 -------------------NLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred -------------------CEEEEEEeCCCeEEEEEeeCCc
Confidence 6777776 59999999998644
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.5e-21 Score=213.97 Aligned_cols=284 Identities=15% Similarity=0.220 Sum_probs=226.5
Q ss_pred eEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecC--CCc
Q 000270 276 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD--DGT 353 (1749)
Q Consensus 276 ~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~--DGt 353 (1749)
+..+.|....+.|.+|.|+++|.+|++++.|.+|+|||..+|+.+.++..+.-.|..+.|..... .++.++. |.+
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~---~~i~sStk~d~t 81 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSN---TVIHSSTKEDDT 81 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCc---eEEEccCCCCCc
Confidence 34455666678999999999999999999999999999999999999998888899999988765 5555555 889
Q ss_pred EEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCC
Q 000270 354 CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN 433 (1749)
Q Consensus 354 IrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~ 433 (1749)
|+..++.+.+.++.+ .+|...|..++.+|-+..|++++.|++|++||++..++
T Consensus 82 IryLsl~dNkylRYF--------------------~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c------- 134 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYF--------------------PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC------- 134 (311)
T ss_pred eEEEEeecCceEEEc--------------------CCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCC-------
Confidence 999999999877665 57999999999999999999999999999999985432
Q ss_pred cceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccc
Q 000270 434 HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQA 513 (1749)
Q Consensus 434 ~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~ 513 (1749)
...+.. ..-..++|.|.| -++|++...+.|+|||++.-.
T Consensus 135 --qg~l~~--~~~pi~AfDp~G--------------------------LifA~~~~~~~IkLyD~Rs~d----------- 173 (311)
T KOG1446|consen 135 --QGLLNL--SGRPIAAFDPEG--------------------------LIFALANGSELIKLYDLRSFD----------- 173 (311)
T ss_pred --ceEEec--CCCcceeECCCC--------------------------cEEEEecCCCeEEEEEecccC-----------
Confidence 122211 222357899987 477777777799999998622
Q ss_pred cccCCCCCCCCCCCCCCCCccccc---CCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCe---EE
Q 000270 514 YHLKVPPPPMPPQPPRGGPRQRIL---PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTEST---YV 587 (1749)
Q Consensus 514 ~~l~v~~~~~~~~~~~g~~i~~l~---~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~V---ts 587 (1749)
.++...+. +.....+.|.|||||++|+.++..+.+++.|.-+|..+.++.++...- ..
T Consensus 174 ----------------kgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~ 237 (311)
T KOG1446|consen 174 ----------------KGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLS 237 (311)
T ss_pred ----------------CCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCccee
Confidence 11222211 335578999999999999999999999999999999999998875532 57
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEeee-ecc------CCCEEEEEcCCCeEEEEECC
Q 000270 588 LDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS-RFR------DGASIILSDDVGQLYILNTG 647 (1749)
Q Consensus 588 LafSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~-~~s------DG~~LAsgd~DG~I~IWdl~ 647 (1749)
.+|+| +++++++|+.||+|.+|++.+|..+..+.+. ..+ +.++...++.+-.+.+|-..
T Consensus 238 a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 238 ATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPD 303 (311)
T ss_pred EEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEecc
Confidence 78999 8889999999999999999999999988863 222 55555555666677777553
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-22 Score=219.89 Aligned_cols=287 Identities=15% Similarity=0.228 Sum_probs=230.6
Q ss_pred EEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEc
Q 000270 280 SCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359 (1749)
Q Consensus 280 tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl 359 (1749)
.++||..+++.|.++.+|.+|.+++.|.++.||--.+|+.+.++.||++.|+|+....+.+ .|++|+.|.++++||+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~---~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSK---HLITGSADQTAKLWDV 81 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcc---eeeeccccceeEEEEc
Confidence 3679999999999999999999999999999999889999999999999999999999887 8999999999999999
Q ss_pred CCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecC-----CCcEEEEeCCCCCCCCCCCCCc
Q 000270 360 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-----DTLARVWNACKPNTDDSDQPNH 434 (1749)
Q Consensus 360 ~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~-----DGtVrIWDl~t~~~~~s~~~~~ 434 (1749)
.+|+++..+.. ...|..+.|+.+|++++.... .+.|.++|++...... ....
T Consensus 82 ~tGk~la~~k~---------------------~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~--~s~e 138 (327)
T KOG0643|consen 82 ETGKQLATWKT---------------------NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDI--DSEE 138 (327)
T ss_pred CCCcEEEEeec---------------------CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhh--cccC
Confidence 99998877743 456899999999998877654 4679999997543211 1233
Q ss_pred ceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCcccccccccc
Q 000270 435 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 514 (1749)
Q Consensus 435 ~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~ 514 (1749)
++..+..+...++.+.|.|.+ +.|++|..||.|.+||+++++..
T Consensus 139 p~~kI~t~~skit~a~Wg~l~--------------------------~~ii~Ghe~G~is~~da~~g~~~---------- 182 (327)
T KOG0643|consen 139 PYLKIPTPDSKITSALWGPLG--------------------------ETIIAGHEDGSISIYDARTGKEL---------- 182 (327)
T ss_pred ceEEecCCccceeeeeecccC--------------------------CEEEEecCCCcEEEEEcccCcee----------
Confidence 466677788999999999977 89999999999999999975421
Q ss_pred ccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCC
Q 000270 515 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN 594 (1749)
Q Consensus 515 ~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd 594 (1749)
+.....|...|+.+.+++|..++++++.|.+-++||+.+-.++.++.. ..+|++.+++|..
T Consensus 183 ------------------v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aaisP~~ 243 (327)
T KOG0643|consen 183 ------------------VDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAAISPLL 243 (327)
T ss_pred ------------------eechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee-cccccceeccccc
Confidence 122344777999999999999999999999999999999999999875 4679999999966
Q ss_pred CcEEEEEeCCCc-E------------EEEeCCCCceEEEEeee--------eccCCCEEEEEcCCCeEEEEECC
Q 000270 595 PRIAMSAGYDGK-T------------IVWDIWEGIPIRIYEIS--------RFRDGASIILSDDVGQLYILNTG 647 (1749)
Q Consensus 595 ~rlLaSgs~DGt-I------------rVWDl~tGk~l~tl~~~--------~~sDG~~LAsgd~DG~I~IWdl~ 647 (1749)
..+++-||.+-. | +++++-..+.+..+.+| .+|||+..++|+.||.|+|..+.
T Consensus 244 d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 244 DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 666655554321 1 12222222233334433 34499999999999999998653
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-22 Score=237.02 Aligned_cols=251 Identities=19% Similarity=0.307 Sum_probs=208.9
Q ss_pred ccceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcC-CCcEEEEEeCCCeEE
Q 000270 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSS-NNALVASASNDCIIR 310 (1749)
Q Consensus 232 ~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSP-Dg~lLASGS~DGtIr 310 (1749)
+....+++..-...|+++.|-.||++||+|...|.|+|||+.+...++.+.+|+.+|..+.|+| +++.|++|+.|+.++
T Consensus 57 ~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k 136 (487)
T KOG0310|consen 57 TRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVK 136 (487)
T ss_pred hhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEE
Confidence 3445555666778999999999999999999999999999887777888999999999999999 567888999999999
Q ss_pred EEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCC
Q 000270 311 VWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGP 390 (1749)
Q Consensus 311 VWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~ 390 (1749)
+||+.+......+.+|+..|.|.+|+|-.. +.+++|+.||.|++||++... ..... -.
T Consensus 137 ~~d~s~a~v~~~l~~htDYVR~g~~~~~~~--hivvtGsYDg~vrl~DtR~~~-~~v~e-------------------ln 194 (487)
T KOG0310|consen 137 YWDLSTAYVQAELSGHTDYVRCGDISPAND--HIVVTGSYDGKVRLWDTRSLT-SRVVE-------------------LN 194 (487)
T ss_pred EEEcCCcEEEEEecCCcceeEeeccccCCC--eEEEecCCCceEEEEEeccCC-ceeEE-------------------ec
Confidence 999999887778999999999999999765 589999999999999998763 11111 24
Q ss_pred CCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCC
Q 000270 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDS 470 (1749)
Q Consensus 391 h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~ 470 (1749)
|..+|..+.|-|.|.+||+++ ...|+|||+.++ ++.+..+..|...|+|+++..++
T Consensus 195 hg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G--------~qll~~~~~H~KtVTcL~l~s~~--------------- 250 (487)
T KOG0310|consen 195 HGCPVESVLALPSGSLIASAG-GNSVKVWDLTTG--------GQLLTSMFNHNKTVTCLRLASDS--------------- 250 (487)
T ss_pred CCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCC--------ceehhhhhcccceEEEEEeecCC---------------
Confidence 788899999999999999886 568999999754 33444555699999999999876
Q ss_pred CCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcC
Q 000270 471 TPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL 550 (1749)
Q Consensus 471 ~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSP 550 (1749)
..|++++-||.|++||+.+.+ ..+. ..-.++|.+++.+|
T Consensus 251 -----------~rLlS~sLD~~VKVfd~t~~K---------vv~s---------------------~~~~~pvLsiavs~ 289 (487)
T KOG0310|consen 251 -----------TRLLSGSLDRHVKVFDTTNYK---------VVHS---------------------WKYPGPVLSIAVSP 289 (487)
T ss_pred -----------ceEeecccccceEEEEccceE---------EEEe---------------------eecccceeeEEecC
Confidence 799999999999999976522 1111 12345799999999
Q ss_pred CCCEEEEEeCCCeEEEEEC
Q 000270 551 DNRFVLAAIMDCRICVWNA 569 (1749)
Q Consensus 551 DG~~LATGs~DGtI~VWDl 569 (1749)
+++.++.|..+|.+.+-..
T Consensus 290 dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 290 DDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred CCceEEEecccceeeeehh
Confidence 9999999999998877643
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-20 Score=219.76 Aligned_cols=287 Identities=16% Similarity=0.190 Sum_probs=205.4
Q ss_pred CCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEE-EEEeCCCeEEEEECCCCceEEEecCCCCceEEE
Q 000270 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV-ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAI 333 (1749)
Q Consensus 255 G~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lL-ASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsI 333 (1749)
+..+++++.|+.|++||+.+++.+..+.++.. +.+++|+|+++.| ++++.++.|++||+.+++.+..+..+.. +..+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~ 78 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELF 78 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEE
Confidence 35788999999999999999999999886644 6789999999876 5677889999999999988877765443 5678
Q ss_pred EeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCC
Q 000270 334 AFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD 413 (1749)
Q Consensus 334 aFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~D 413 (1749)
+|+|+++ .++++++.++.|.+||+.+...+..+. ....+.+++|+|+|.+++++..+
T Consensus 79 ~~~~~g~--~l~~~~~~~~~l~~~d~~~~~~~~~~~---------------------~~~~~~~~~~~~dg~~l~~~~~~ 135 (300)
T TIGR03866 79 ALHPNGK--ILYIANEDDNLVTVIDIETRKVLAEIP---------------------VGVEPEGMAVSPDGKIVVNTSET 135 (300)
T ss_pred EECCCCC--EEEEEcCCCCeEEEEECCCCeEEeEee---------------------CCCCcceEEECCCCCEEEEEecC
Confidence 9999986 234555678999999998766544331 12235789999999999988876
Q ss_pred C-cEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEE-EEEeCCC
Q 000270 414 T-LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI-VTCSRDG 491 (1749)
Q Consensus 414 G-tVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~L-aSgS~DG 491 (1749)
+ .+.+||..+.. .+..+. ....+.+++|++++ ..| +++..+|
T Consensus 136 ~~~~~~~d~~~~~---------~~~~~~-~~~~~~~~~~s~dg--------------------------~~l~~~~~~~~ 179 (300)
T TIGR03866 136 TNMAHFIDTKTYE---------IVDNVL-VDQRPRFAEFTADG--------------------------KELWVSSEIGG 179 (300)
T ss_pred CCeEEEEeCCCCe---------EEEEEE-cCCCccEEEECCCC--------------------------CEEEEEcCCCC
Confidence 5 46778885422 222221 22345678899887 555 4555799
Q ss_pred cEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEE-eCCCeEEEEECC
Q 000270 492 SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA-IMDCRICVWNAA 570 (1749)
Q Consensus 492 tIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATG-s~DGtI~VWDl~ 570 (1749)
.|++||+.+++...... ... .+ ..........++|+|+|++++++ +.++.|.+||+.
T Consensus 180 ~v~i~d~~~~~~~~~~~-------~~~----------~~-----~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 180 TVSVIDVATRKVIKKIT-------FEI----------PG-----VHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred EEEEEEcCcceeeeeee-------ecc----------cc-----cccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence 99999998754221110 000 00 00001123468899999986554 456789999999
Q ss_pred CCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeee
Q 000270 571 DGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISR 625 (1749)
Q Consensus 571 tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~~ 625 (1749)
+++.+..+. +...+.+++|+|++..++++++.+|.|+|||+.+++++..+..+.
T Consensus 238 ~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 291 (300)
T TIGR03866 238 TYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGR 291 (300)
T ss_pred CCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccc
Confidence 998876653 345789999999544444444679999999999999999887653
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.5e-21 Score=231.22 Aligned_cols=367 Identities=17% Similarity=0.242 Sum_probs=270.7
Q ss_pred cccceEEEEccCCCCEEEEEECCCCC---EEEEEeCCcEEEEEECCCCe---------------------EEE-------
Q 000270 231 QKMQNIKRVRGHRNAVYCAIFDRSGR---YVITGSDDRLVKIWSMETAY---------------------CLA------- 279 (1749)
Q Consensus 231 ~~~~~i~tL~GH~~~Vt~VaFSPDG~---~LATGS~DGtVrIWDl~Tg~---------------------~l~------- 279 (1749)
.+++.+..|.||.+.|.+++|...+. +||++|.|..|+||.+.-+. .+.
T Consensus 179 d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is 258 (764)
T KOG1063|consen 179 DSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRIS 258 (764)
T ss_pred cceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEe
Confidence 46788999999999999999988654 89999999999999874221 111
Q ss_pred ---EEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCC--c-----eEEEecCCCCceEEEEeccCCCcceEEEeec
Q 000270 280 ---SCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG--L-----PISVLRGHTAAVTAIAFSPRPGSVYQLLSSS 349 (1749)
Q Consensus 280 ---tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tg--k-----~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS 349 (1749)
.+.||...|.++.|+|.+..|+++|.|.++.||.-.+. - .+..+.|..+...+..|+|+++ .+++-+
T Consensus 259 ~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~---~ii~~g 335 (764)
T KOG1063|consen 259 FEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN---VIIAHG 335 (764)
T ss_pred hhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC---EEEEec
Confidence 13499999999999999999999999999999976443 2 1222334556789999999986 888899
Q ss_pred CCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCC
Q 000270 350 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDS 429 (1749)
Q Consensus 350 ~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s 429 (1749)
..|..++|...... .+.......+|...|+.++|+|.|.+|++.+.|.+-|+|-.-. +
T Consensus 336 ~~Gg~hlWkt~d~~-----------------~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg-~---- 393 (764)
T KOG1063|consen 336 RTGGFHLWKTKDKT-----------------FWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWG-R---- 393 (764)
T ss_pred ccCcEEEEeccCcc-----------------ceeeccccccccccceeeeecCCCCEEEEeccccceeeecccc-c----
Confidence 99999999822111 1111223467999999999999999999999999999997641 1
Q ss_pred CCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCC-------
Q 000270 430 DQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR------- 502 (1749)
Q Consensus 430 ~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k------- 502 (1749)
.+....+..-.-|...++|++|-+.. ..|++|.....+|+|+....-
T Consensus 394 q~~wHEiaRPQiHGyDl~c~~~vn~~--------------------------~~FVSgAdEKVlRvF~aPk~fv~~l~~i 447 (764)
T KOG1063|consen 394 QQEWHEIARPQIHGYDLTCLSFVNED--------------------------LQFVSGADEKVLRVFEAPKSFVKSLMAI 447 (764)
T ss_pred ccceeeecccccccccceeeehccCC--------------------------ceeeecccceeeeeecCcHHHHHHHHHH
Confidence 12256666677899999999998732 478888888899998765210
Q ss_pred ---CCccc-cc--cccccccCCCCCCCCC-------------------------CCC---------CCCCcccccCCCCC
Q 000270 503 ---SHPKA-AR--WTQAYHLKVPPPPMPP-------------------------QPP---------RGGPRQRILPTPRG 542 (1749)
Q Consensus 503 ---~~~~~-~~--~~~~~~l~v~~~~~~~-------------------------~~~---------~g~~i~~l~~h~~~ 542 (1749)
+.... .. -...-.+.+...+..+ .++ --..+..+.+|...
T Consensus 448 ~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyE 527 (764)
T KOG1063|consen 448 CGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYE 527 (764)
T ss_pred hCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCcee
Confidence 00000 00 0000000000000000 000 01234567899999
Q ss_pred eeEEEEcCCCCEEEEEeCCC-----eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCce
Q 000270 543 VNMIVWSLDNRFVLAAIMDC-----RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIP 617 (1749)
Q Consensus 543 VtsVafSPDG~~LATGs~DG-----tI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~ 617 (1749)
|.+++.+|+|++||+++... .|+||+..+...++.+.+|.-.|+.|+||| ++++|++++.|.++.+|....+..
T Consensus 528 v~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~ 606 (764)
T KOG1063|consen 528 VYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIK 606 (764)
T ss_pred EEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeecccc
Confidence 99999999999999998543 599999999999999999999999999999 788999999999999998754321
Q ss_pred E------------EEEeeeeccCCCEEEEEcCCCeEEEEECCCC
Q 000270 618 I------------RIYEISRFRDGASIILSDDVGQLYILNTGQG 649 (1749)
Q Consensus 618 l------------~tl~~~~~sDG~~LAsgd~DG~I~IWdl~tG 649 (1749)
. -.+...+.+|+.++|+++-|..|.||....+
T Consensus 607 ~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 607 DEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred hhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 1 1122346669999999999999999998766
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=238.76 Aligned_cols=255 Identities=19% Similarity=0.268 Sum_probs=211.2
Q ss_pred ccccccceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEcc-CCCCeEEEEEcCCCcEEEEEeCC
Q 000270 228 TMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRG-HEGDITDLAVSSNNALVASASND 306 (1749)
Q Consensus 228 ~~~~~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~g-Hs~~VtsLafSPDg~lLASGS~D 306 (1749)
|...+.........+...|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|. +..|.+|+.|
T Consensus 202 W~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~ 279 (484)
T KOG0305|consen 202 WSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRD 279 (484)
T ss_pred EecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCC
Confidence 33344444444555589999999999999999999999999999999999999998 99999999998 7789999999
Q ss_pred CeEEEEECCCCceEEE-ecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCC
Q 000270 307 CIIRVWRLPDGLPISV-LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS 385 (1749)
Q Consensus 307 GtIrVWDl~tgk~l~t-L~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~ 385 (1749)
+.|.++|++..+.+.. +.+|...|..+.|++|+. +||+|+.|+.|.|||.........+
T Consensus 280 ~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~---~lASGgnDN~~~Iwd~~~~~p~~~~----------------- 339 (484)
T KOG0305|consen 280 GKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGN---QLASGGNDNVVFIWDGLSPEPKFTF----------------- 339 (484)
T ss_pred CcEEEEEEecchhhhhhhhcccceeeeeEECCCCC---eeccCCCccceEeccCCCccccEEE-----------------
Confidence 9999999998865554 889999999999999998 9999999999999999555444433
Q ss_pred CCCCCCCCceEEEEEcC-CCCEEEEec--CCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCccccccc
Q 000270 386 SSAGPQSHQIFCCAFNA-NGTVFVTGS--SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSL 462 (1749)
Q Consensus 386 ~s~~~h~~~Vt~LafSP-DG~~LaSGs--~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~ 462 (1749)
..|...|.+++|+| ...+||+|+ .|+.|++||..++. .+.. ..-...|.+|.|++..
T Consensus 340 ---~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~---------~i~~-vdtgsQVcsL~Wsk~~------- 399 (484)
T KOG0305|consen 340 ---TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA---------RIDS-VDTGSQVCSLIWSKKY------- 399 (484)
T ss_pred ---eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc---------Eecc-cccCCceeeEEEcCCC-------
Confidence 46889999999999 556888865 59999999997643 2222 2345789999999875
Q ss_pred ccCCCCCCCCcccccccCCCEEEE--EeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCC
Q 000270 463 ADSSKEDSTPKFKNSWFCHDNIVT--CSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP 540 (1749)
Q Consensus 463 ~~~~~~~~~~~~~~s~~~~~~LaS--gS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~ 540 (1749)
+-|++ |..++.|.||++.+ ...+..+.+|.
T Consensus 400 -------------------kEi~sthG~s~n~i~lw~~ps-----------------------------~~~~~~l~gH~ 431 (484)
T KOG0305|consen 400 -------------------KELLSTHGYSENQITLWKYPS-----------------------------MKLVAELLGHT 431 (484)
T ss_pred -------------------CEEEEecCCCCCcEEEEeccc-----------------------------cceeeeecCCc
Confidence 33443 44677899998875 23455678899
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 000270 541 RGVNMIVWSLDNRFVLAAIMDCRICVWNAADG 572 (1749)
Q Consensus 541 ~~VtsVafSPDG~~LATGs~DGtI~VWDl~tg 572 (1749)
..|..+++||||..|++|+.|.++++|++-..
T Consensus 432 ~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 432 SRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 99999999999999999999999999998764
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=235.76 Aligned_cols=275 Identities=19% Similarity=0.306 Sum_probs=228.4
Q ss_pred eEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceE--EEecCCCCceEE-EEeccCCCcceEEEeecCCC
Q 000270 276 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI--SVLRGHTAAVTA-IAFSPRPGSVYQLLSSSDDG 352 (1749)
Q Consensus 276 ~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l--~tL~gHs~~Vts-IaFSPdg~~~~~LaSgS~DG 352 (1749)
++-+.+.||...|..+++.+. ..++++|.||+++||+-..++.+ ..+.+|.+.|.. +++.+..+ -.|++|+.|+
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~--~~l~~g~~D~ 81 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDK--GRLVVGGMDT 81 (745)
T ss_pred eeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccC--cceEeecccc
Confidence 456788999999999998754 48999999999999997655544 456778888877 88876322 2699999999
Q ss_pred cEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCC
Q 000270 353 TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQP 432 (1749)
Q Consensus 353 tIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~ 432 (1749)
+|.+|.+........+ .+|...|.|++...++. +++|+.|.++++|-.
T Consensus 82 ~i~v~~~~~~~P~~~L--------------------kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~----------- 129 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTL--------------------KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI----------- 129 (745)
T ss_pred eEEEEecCCCCchhhh--------------------hccccceeeeecCCcCc-eEecccccceEEecc-----------
Confidence 9999998877655544 57899999999888887 999999999999988
Q ss_pred CcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCcccccccc
Q 000270 433 NHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQ 512 (1749)
Q Consensus 433 ~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~ 512 (1749)
..+...+.+|...|+++.+-|. +.++|||.|.+|++|.-
T Consensus 130 ~~l~~~l~gH~asVWAv~~l~e---------------------------~~~vTgsaDKtIklWk~-------------- 168 (745)
T KOG0301|consen 130 GELVYSLQGHTASVWAVASLPE---------------------------NTYVTGSADKTIKLWKG-------------- 168 (745)
T ss_pred hhhhcccCCcchheeeeeecCC---------------------------CcEEeccCcceeeeccC--------------
Confidence 4456679999999999998886 48999999999999954
Q ss_pred ccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcC
Q 000270 513 AYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHP 592 (1749)
Q Consensus 513 ~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSP 592 (1749)
+....++.+|..-|..+++-+++ .+++++.||.|++|++ +|+++.++.||+.-|+++....
T Consensus 169 -----------------~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~ 229 (745)
T KOG0301|consen 169 -----------------GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMAL 229 (745)
T ss_pred -----------------CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecC
Confidence 34566788999999999998775 5778999999999999 8999999999999999999666
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceEEEEeeeecc-------CCCEEEEEcCCCeEEEEECCC
Q 000270 593 FNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR-------DGASIILSDDVGQLYILNTGQ 648 (1749)
Q Consensus 593 dd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~~~s-------DG~~LAsgd~DG~I~IWdl~t 648 (1749)
+..+++|+|.|++++||+.. .+.+.+.....+ ...-|++|++||.|+||....
T Consensus 230 -~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 230 -SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred -CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence 67788999999999999975 777777654322 445578899999999999764
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-22 Score=216.61 Aligned_cols=259 Identities=23% Similarity=0.365 Sum_probs=207.4
Q ss_pred EccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCC---eEEEEEccCCCCeEEEEEcC--CCcEEEEEeCCCeEEEEE
Q 000270 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA---YCLASCRGHEGDITDLAVSS--NNALVASASNDCIIRVWR 313 (1749)
Q Consensus 239 L~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg---~~l~tL~gHs~~VtsLafSP--Dg~lLASGS~DGtIrVWD 313 (1749)
-.+|.+.|..+..+--|++|||++.|++|+|+.+... .++.+|.||.++|..++|.. -|.+||+++.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 4689999999999999999999999999999999753 57889999999999999986 899999999999999999
Q ss_pred CCCCc--eEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCC
Q 000270 314 LPDGL--PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQ 391 (1749)
Q Consensus 314 l~tgk--~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h 391 (1749)
-..|+ .......|.+.|++|+|.|.+-+ ..|++++.||.|.|.+++....-. .......|
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheyg-l~LacasSDG~vsvl~~~~~g~w~-----------------t~ki~~aH 148 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYG-LLLACASSDGKVSVLTYDSSGGWT-----------------TSKIVFAH 148 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccc-eEEEEeeCCCcEEEEEEcCCCCcc-----------------chhhhhcc
Confidence 88774 34456789999999999998754 489999999999999887541110 11123567
Q ss_pred CCceEEEEEcCC---C-----------CEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcc
Q 000270 392 SHQIFCCAFNAN---G-----------TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVA 457 (1749)
Q Consensus 392 ~~~Vt~LafSPD---G-----------~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~a 457 (1749)
.-.|++++|.|. | +.|++|+.|..|+||+...+. ...-..|.+|.+.|..++|.|...
T Consensus 149 ~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~-------w~~e~~l~~H~dwVRDVAwaP~~g- 220 (299)
T KOG1332|consen 149 EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS-------WKLERTLEGHKDWVRDVAWAPSVG- 220 (299)
T ss_pred ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc-------hhhhhhhhhcchhhhhhhhccccC-
Confidence 888999999985 4 569999999999999996532 344456899999999999999641
Q ss_pred cccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCccccc
Q 000270 458 SRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL 537 (1749)
Q Consensus 458 s~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~ 537 (1749)
+....|++|+.||++.||..... ...|.. ..+.
T Consensus 221 ---------------------l~~s~iAS~SqDg~viIwt~~~e-----~e~wk~---------------------tll~ 253 (299)
T KOG1332|consen 221 ---------------------LPKSTIASCSQDGTVIIWTKDEE-----YEPWKK---------------------TLLE 253 (299)
T ss_pred ---------------------CCceeeEEecCCCcEEEEEecCc-----cCcccc---------------------cccc
Confidence 11258999999999999976521 111111 1122
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 000270 538 PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAA 570 (1749)
Q Consensus 538 ~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~ 570 (1749)
.....+..+.||..|..|++++.|+.|.+|--.
T Consensus 254 ~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 254 EFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 244579999999999999999999999999753
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-21 Score=232.10 Aligned_cols=322 Identities=17% Similarity=0.266 Sum_probs=250.6
Q ss_pred EEEEEECCCCCEEEEEeCCcEEEEEECCCCeE---EEEEccCCCCeEEEEEcCC-----------CcEEEEEeCCCeEEE
Q 000270 246 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYC---LASCRGHEGDITDLAVSSN-----------NALVASASNDCIIRV 311 (1749)
Q Consensus 246 Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~---l~tL~gHs~~VtsLafSPD-----------g~lLASGS~DGtIrV 311 (1749)
..++.|++...+|.+...|..++|||+..-.. ...+..|...|+++..-|- ...+++++.|++|||
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 34677999999999999999999999976433 3345569999998876551 135889999999999
Q ss_pred EECCCCceEEE-------------------------------------ecCCCCceEEEEeccCCCcceEEEeecCCCcE
Q 000270 312 WRLPDGLPISV-------------------------------------LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354 (1749)
Q Consensus 312 WDl~tgk~l~t-------------------------------------L~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtI 354 (1749)
|++..+..-.+ .-+....+.+|+.+|+++ +||+|..-|.|
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq---hLAsGDr~Gnl 483 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ---HLASGDRGGNL 483 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc---eecccCccCce
Confidence 99865311000 001234689999999998 99999999999
Q ss_pred EEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcC---CCCEEEEecCCCcEEEEeCCCCCCCCCCC
Q 000270 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA---NGTVFVTGSSDTLARVWNACKPNTDDSDQ 431 (1749)
Q Consensus 355 rIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSP---DG~~LaSGs~DGtVrIWDl~t~~~~~s~~ 431 (1749)
+||++........+ ..|...|.|+.|+- ..++||+++.|..|+|||+..
T Consensus 484 rVy~Lq~l~~~~~~--------------------eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r-------- 535 (1080)
T KOG1408|consen 484 RVYDLQELEYTCFM--------------------EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR-------- 535 (1080)
T ss_pred EEEEehhhhhhhhe--------------------ecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc--------
Confidence 99999876554443 56889999999986 346899999999999999943
Q ss_pred CCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccc
Q 000270 432 PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 511 (1749)
Q Consensus 432 ~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~ 511 (1749)
....+.++.+|...|++|.|...++ ...+++++.|..|.+--.+. ...+.
T Consensus 536 ny~l~qtld~HSssITsvKFa~~gl------------------------n~~MiscGADksimFr~~qk-~~~g~----- 585 (1080)
T KOG1408|consen 536 NYDLVQTLDGHSSSITSVKFACNGL------------------------NRKMISCGADKSIMFRVNQK-ASSGR----- 585 (1080)
T ss_pred ccchhhhhcccccceeEEEEeecCC------------------------ceEEEeccCchhhheehhcc-ccCce-----
Confidence 3456788999999999999987762 24788999998876532221 00000
Q ss_pred cccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecC---CCCCeEEE
Q 000270 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTG---HTESTYVL 588 (1749)
Q Consensus 512 ~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~g---H~~~VtsL 588 (1749)
..+..+-......+..++..|..+++++++.|..|+|||+.+|+.++.|+| |.+....+
T Consensus 586 ------------------~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv 647 (1080)
T KOG1408|consen 586 ------------------LFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKV 647 (1080)
T ss_pred ------------------eccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEE
Confidence 000011111233578899999999999999999999999999999999975 66778889
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEeee--------eccCCCEEEEEcCCCeEEEEECC
Q 000270 589 DVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS--------RFRDGASIILSDDVGQLYILNTG 647 (1749)
Q Consensus 589 afSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~--------~~sDG~~LAsgd~DG~I~IWdl~ 647 (1749)
...| .+.+|++...|.++.++|..+|+++....+| +.+|-+.|++.+.||.|+||.+.
T Consensus 648 ~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 648 ILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred EECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECc
Confidence 9999 7889999999999999999999999888765 23499999999999999999973
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-22 Score=229.13 Aligned_cols=282 Identities=19% Similarity=0.310 Sum_probs=227.3
Q ss_pred EEEEEccCCCCeEEEEEcCCC-cEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEE
Q 000270 277 CLASCRGHEGDITDLAVSSNN-ALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355 (1749)
Q Consensus 277 ~l~tL~gHs~~VtsLafSPDg-~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIr 355 (1749)
.+..|.||..+|.||+=+|.. ..+|+|+.||.|+|||+.+..++.++..|.+.|.+|++... .+++++.|.+|+
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~-----~~~tvgdDKtvK 132 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQT-----SFFTVGDDKTVK 132 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEeccc-----ceEEecCCccee
Confidence 455678999999999999976 78999999999999999999999999999999999999882 689999999999
Q ss_pred EEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcc
Q 000270 356 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHE 435 (1749)
Q Consensus 356 IWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~ 435 (1749)
.|-+... ...++. ....+..+.-+..+..+||+|. .|.|||... ..+
T Consensus 133 ~wk~~~~-p~~til---------------------g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R---------~~P 179 (433)
T KOG0268|consen 133 QWKIDGP-PLHTIL---------------------GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQR---------DNP 179 (433)
T ss_pred eeeccCC-cceeee---------------------ccccccccccccccccccccCc--eeeeccccc---------CCc
Confidence 9987652 222221 2334566666667778888875 588999843 445
Q ss_pred eeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccc
Q 000270 436 IDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYH 515 (1749)
Q Consensus 436 i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~ 515 (1749)
+..+..-.+.|.++.|+|.. ...|++|+.|+.|.|||+++..++.++.
T Consensus 180 v~smswG~Dti~svkfNpvE-------------------------TsILas~~sDrsIvLyD~R~~~Pl~KVi------- 227 (433)
T KOG0268|consen 180 VSSMSWGADSISSVKFNPVE-------------------------TSILASCASDRSIVLYDLRQASPLKKVI------- 227 (433)
T ss_pred cceeecCCCceeEEecCCCc-------------------------chheeeeccCCceEEEecccCCccceee-------
Confidence 66777778889999999875 2688999999999999999755432221
Q ss_pred cCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEecCCCCCeEEEEEcCCC
Q 000270 516 LKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG-SLVHSLTGHTESTYVLDVHPFN 594 (1749)
Q Consensus 516 l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tg-klv~tL~gH~~~VtsLafSPdd 594 (1749)
....-+.|+|+|.+-.+++|+.|..++.||+..- .++....+|...|.+++|+| -
T Consensus 228 -----------------------~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp-t 283 (433)
T KOG0268|consen 228 -----------------------LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP-T 283 (433)
T ss_pred -----------------------eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC-C
Confidence 1224577999998888899999999999999764 57788999999999999999 5
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceEE---------EEeeeeccCCCEEEEEcCCCeEEEEECCCCccc
Q 000270 595 PRIAMSAGYDGKTIVWDIWEGIPIR---------IYEISRFRDGASIILSDDVGQLYILNTGQGESQ 652 (1749)
Q Consensus 595 ~rlLaSgs~DGtIrVWDl~tGk~l~---------tl~~~~~sDG~~LAsgd~DG~I~IWdl~tGe~~ 652 (1749)
|+-++|||.|.+|+||.+..|...- .+...+..|.+++++|++||.|++|.....+.+
T Consensus 284 G~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 284 GQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred cchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence 6677899999999999998775443 333445559999999999999999997655443
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-21 Score=235.98 Aligned_cols=278 Identities=18% Similarity=0.302 Sum_probs=223.3
Q ss_pred EEEEc-CCCcEEEEEeCCCeEEEEECCCC------ceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCC
Q 000270 290 DLAVS-SNNALVASASNDCIIRVWRLPDG------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 362 (1749)
Q Consensus 290 sLafS-PDg~lLASGS~DGtIrVWDl~tg------k~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg 362 (1749)
.+..+ |.+++|.|||.||.|++|++... .++..+..|...|+.++.+.+++ .|++++.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~---tlIS~SsDtTVK~W~~~~~ 105 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK---TLISASSDTTVKVWNAHKD 105 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC---ceEEecCCceEEEeecccC
Confidence 34444 36778999999999999998643 24778889999999999999987 8999999999999998765
Q ss_pred c--ccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEE-cCCCCEEEEecCCCcEEEEeCCCCCC--CCCCCCCccee
Q 000270 363 Q--FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF-NANGTVFVTGSSDTLARVWNACKPNT--DDSDQPNHEID 437 (1749)
Q Consensus 363 ~--~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~Laf-SPDG~~LaSGs~DGtVrIWDl~t~~~--~~s~~~~~~i~ 437 (1749)
. +.. ..+.|...|.|+++ .++..++|+|+-|+.|.|||+.++.. ..... .....
T Consensus 106 ~~~c~s--------------------tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n-~~t~~ 164 (735)
T KOG0308|consen 106 NTFCMS--------------------TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN-NVTVN 164 (735)
T ss_pred cchhHh--------------------hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc-ccccc
Confidence 3 222 23579999999999 78889999999999999999987632 11111 11222
Q ss_pred eec-CCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCcccccccccccc
Q 000270 438 VLS-GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 516 (1749)
Q Consensus 438 ~l~-gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l 516 (1749)
.+. |+...|++++..+.+ ..|++|+..+.+++||.++.+
T Consensus 165 sl~sG~k~siYSLA~N~t~--------------------------t~ivsGgtek~lr~wDprt~~-------------- 204 (735)
T KOG0308|consen 165 SLGSGPKDSIYSLAMNQTG--------------------------TIIVSGGTEKDLRLWDPRTCK-------------- 204 (735)
T ss_pred cCCCCCccceeeeecCCcc--------------------------eEEEecCcccceEEecccccc--------------
Confidence 333 889999999999876 689999999999999998743
Q ss_pred CCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCc
Q 000270 517 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR 596 (1749)
Q Consensus 517 ~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~r 596 (1749)
.+..+.+|...|..+..+.||+.+++|+.||+|++||+...+|++++..|...|+++..+| +=.
T Consensus 205 ---------------kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~-sf~ 268 (735)
T KOG0308|consen 205 ---------------KIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP-SFT 268 (735)
T ss_pred ---------------ceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC-Ccc
Confidence 3456779999999999999999999999999999999999999999999999999999998 778
Q ss_pred EEEEEeCCCcEEEEeCCCC-ceEEEEeee-------eccCCCEEEEEcCCCeEEEEECC
Q 000270 597 IAMSAGYDGKTIVWDIWEG-IPIRIYEIS-------RFRDGASIILSDDVGQLYILNTG 647 (1749)
Q Consensus 597 lLaSgs~DGtIrVWDl~tG-k~l~tl~~~-------~~sDG~~LAsgd~DG~I~IWdl~ 647 (1749)
.+++|+.||.|..=|+.+. ++...+.-. ...+.+.+-+++.|+.|.-|...
T Consensus 269 ~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 269 HVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred eEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence 8999999999999999884 444444321 11123333566777889988763
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.9e-20 Score=196.92 Aligned_cols=297 Identities=20% Similarity=0.270 Sum_probs=224.8
Q ss_pred cceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCC------C---------eEEEEEccCCCCeEEEEEcCCC
Q 000270 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET------A---------YCLASCRGHEGDITDLAVSSNN 297 (1749)
Q Consensus 233 ~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~T------g---------~~l~tL~gHs~~VtsLafSPDg 297 (1749)
+..+..|. ...+|.+|+|+|.|.+.|.|+...+++|.-... + ...+.-+.|.+.|+|.+|+|+|
T Consensus 23 f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g 101 (350)
T KOG0641|consen 23 FEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG 101 (350)
T ss_pred eEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc
Confidence 34444444 467899999999999999999999999875421 1 1122335689999999999999
Q ss_pred cEEEEEeCCCeEEEEECCCCceE-----EEecCCCCceEEEEeccCCCcc-eEEEeec-CCCcEEEEEcCCCcccceeec
Q 000270 298 ALVASASNDCIIRVWRLPDGLPI-----SVLRGHTAAVTAIAFSPRPGSV-YQLLSSS-DDGTCRIWDARYSQFSPRIYI 370 (1749)
Q Consensus 298 ~lLASGS~DGtIrVWDl~tgk~l-----~tL~gHs~~VtsIaFSPdg~~~-~~LaSgS-~DGtIrIWDl~tg~~l~~l~~ 370 (1749)
.+||+|+.|.+|++..+....+- ..+.-|.+.|..++|..+.... .+|++++ .|..|.+-|..+|+....+
T Consensus 102 eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~-- 179 (350)
T KOG0641|consen 102 ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL-- 179 (350)
T ss_pred CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee--
Confidence 99999999999999876544322 3466799999999998764322 3556554 4556666676666544333
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecC---CCCCeE
Q 000270 371 PRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG---HENDVN 447 (1749)
Q Consensus 371 ~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~g---H~~~V~ 447 (1749)
.+|.+-|.++ ++-+|-.|++|+.|.+|++||++-..+...... .+.+ ....|.
T Consensus 180 ------------------sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~-----~~~~~glessava 235 (350)
T KOG0641|consen 180 ------------------SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDN-----DFHDGGLESSAVA 235 (350)
T ss_pred ------------------cCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccC-----cccCCCcccceeE
Confidence 4677778776 455788999999999999999975432211110 0111 135788
Q ss_pred EEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCC
Q 000270 448 YVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQP 527 (1749)
Q Consensus 448 sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~ 527 (1749)
+|+..|.+ .+|++|-.|....+||++.
T Consensus 236 av~vdpsg--------------------------rll~sg~~dssc~lydirg--------------------------- 262 (350)
T KOG0641|consen 236 AVAVDPSG--------------------------RLLASGHADSSCMLYDIRG--------------------------- 262 (350)
T ss_pred EEEECCCc--------------------------ceeeeccCCCceEEEEeeC---------------------------
Confidence 99999987 8999999999999999985
Q ss_pred CCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC----ceEEEecCCCCCeEEEEEcCCCCcEEEEEeC
Q 000270 528 PRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG----SLVHSLTGHTESTYVLDVHPFNPRIAMSAGY 603 (1749)
Q Consensus 528 ~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tg----klv~tL~gH~~~VtsLafSPdd~rlLaSgs~ 603 (1749)
+.+++++.+|...|.++.|||...|+++++.|..|++-|+... -.+.+...|...+..+.|+|.+ .-+++.+.
T Consensus 263 --~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d-~sfisssa 339 (350)
T KOG0641|consen 263 --GRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQD-FSFISSSA 339 (350)
T ss_pred --CceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCcc-ceeeeccC
Confidence 4567788899999999999999999999999999999998632 1234556799999999999944 55668899
Q ss_pred CCcEEEEeC
Q 000270 604 DGKTIVWDI 612 (1749)
Q Consensus 604 DGtIrVWDl 612 (1749)
|.++.+|-+
T Consensus 340 dkt~tlwa~ 348 (350)
T KOG0641|consen 340 DKTATLWAL 348 (350)
T ss_pred cceEEEecc
Confidence 999999976
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=211.73 Aligned_cols=267 Identities=22% Similarity=0.313 Sum_probs=207.4
Q ss_pred EEEEeCCcEEEEEECCC------------CeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecC
Q 000270 258 VITGSDDRLVKIWSMET------------AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRG 325 (1749)
Q Consensus 258 LATGS~DGtVrIWDl~T------------g~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~g 325 (1749)
|++|++...|.=+++.- ...+..+..|.+.|+++|++ +.++|+||.|-+|+|||+.....+..+-.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceec
Confidence 56666666665555431 12355677899999999995 89999999999999999999999999999
Q ss_pred CCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCC
Q 000270 326 HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT 405 (1749)
Q Consensus 326 Hs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~ 405 (1749)
|.+.|+++.|.+.-.. ..|++|+.||.|.+|+...-.++..+ .+|.++|+.++.+|.|+
T Consensus 82 HagsitaL~F~~~~S~-shLlS~sdDG~i~iw~~~~W~~~~sl--------------------K~H~~~Vt~lsiHPS~K 140 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSK-SHLLSGSDDGHIIIWRVGSWELLKSL--------------------KAHKGQVTDLSIHPSGK 140 (362)
T ss_pred cccceEEEEecCCcch-hheeeecCCCcEEEEEcCCeEEeeee--------------------cccccccceeEecCCCc
Confidence 9999999999987532 26999999999999998776555444 56888899999999999
Q ss_pred EEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEE
Q 000270 406 VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIV 485 (1749)
Q Consensus 406 ~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~La 485 (1749)
+-++.+.|+.+++|++-.+.. ..+..+ ......|.|+|.| ++|+
T Consensus 141 LALsVg~D~~lr~WNLV~Gr~-------a~v~~L---~~~at~v~w~~~G--------------------------d~F~ 184 (362)
T KOG0294|consen 141 LALSVGGDQVLRTWNLVRGRV-------AFVLNL---KNKATLVSWSPQG--------------------------DHFV 184 (362)
T ss_pred eEEEEcCCceeeeehhhcCcc-------ceeecc---CCcceeeEEcCCC--------------------------CEEE
Confidence 999999999999999966432 111111 1222348899887 7777
Q ss_pred EEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEE
Q 000270 486 TCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRIC 565 (1749)
Q Consensus 486 SgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~ 565 (1749)
.++.+ .|-||.+.+..... ....+..+.++.|- ++..|++|+.|+.|.
T Consensus 185 v~~~~-~i~i~q~d~A~v~~------------------------------~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~ 232 (362)
T KOG0294|consen 185 VSGRN-KIDIYQLDNASVFR------------------------------EIENPKRILCATFL-DGSELLVGGDNEWIS 232 (362)
T ss_pred EEecc-EEEEEecccHhHhh------------------------------hhhccccceeeeec-CCceEEEecCCceEE
Confidence 77766 57788776522111 11112345566654 677899999999999
Q ss_pred EEECCCCceEEEecCCCCCeEEEEEcC-CCCcEEEEEeCCCcEEEEeCCCC
Q 000270 566 VWNAADGSLVHSLTGHTESTYVLDVHP-FNPRIAMSAGYDGKTIVWDIWEG 615 (1749)
Q Consensus 566 VWDl~tgklv~tL~gH~~~VtsLafSP-dd~rlLaSgs~DGtIrVWDl~tG 615 (1749)
+||..++.+...+.+|...|-++.+-- ..+.+|+|+|.||.|+|||+...
T Consensus 233 ~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 233 LKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 999999999999999999999998532 25689999999999999999766
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-20 Score=237.07 Aligned_cols=212 Identities=10% Similarity=0.209 Sum_probs=164.7
Q ss_pred ccceEEEEccCCCCEEEEEECCC-CCEEEEEeCCcEEEEEECCCCe--------EEEEEccCCCCeEEEEEcCCCcE-EE
Q 000270 232 KMQNIKRVRGHRNAVYCAIFDRS-GRYVITGSDDRLVKIWSMETAY--------CLASCRGHEGDITDLAVSSNNAL-VA 301 (1749)
Q Consensus 232 ~~~~i~tL~GH~~~Vt~VaFSPD-G~~LATGS~DGtVrIWDl~Tg~--------~l~tL~gHs~~VtsLafSPDg~l-LA 301 (1749)
+...+..|.||.+.|.+++|+|+ +.+||||+.||+|+|||+.++. .+..+.+|...|.+++|+|++.. ||
T Consensus 63 r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLa 142 (568)
T PTZ00420 63 RKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMC 142 (568)
T ss_pred CCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEE
Confidence 34578889999999999999997 7899999999999999997642 34567899999999999998875 57
Q ss_pred EEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCC
Q 000270 302 SASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRN 381 (1749)
Q Consensus 302 SGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~ 381 (1749)
+++.|++|+|||+.+++.+..+. |...|.+++|+|++. +|++++.|+.|+|||++++..+..+.
T Consensus 143 SgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~---lLat~s~D~~IrIwD~Rsg~~i~tl~------------ 206 (568)
T PTZ00420 143 SSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGN---LLSGTCVGKHMHIIDPRKQEIASSFH------------ 206 (568)
T ss_pred EEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCC---EEEEEecCCEEEEEECCCCcEEEEEe------------
Confidence 89999999999999998877776 667899999999987 88999999999999999987665542
Q ss_pred CCCCCCCCCCCCc-----eEEEEEcCCCCEEEEecCCC----cEEEEeCCCCCCCCCCCCCcceee--ecCCCCCeEEEE
Q 000270 382 MAPSSSAGPQSHQ-----IFCCAFNANGTVFVTGSSDT----LARVWNACKPNTDDSDQPNHEIDV--LSGHENDVNYVQ 450 (1749)
Q Consensus 382 ~~~~~s~~~h~~~-----Vt~LafSPDG~~LaSGs~DG----tVrIWDl~t~~~~~s~~~~~~i~~--l~gH~~~V~sVa 450 (1749)
+|.+. +....|++++.+|++++.++ .|+|||++.. ...+.. +..+.+.+....
T Consensus 207 --------gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~--------~~pl~~~~ld~~~~~L~p~~ 270 (568)
T PTZ00420 207 --------IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT--------TSALVTMSIDNASAPLIPHY 270 (568)
T ss_pred --------cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC--------CCceEEEEecCCccceEEee
Confidence 23332 34455678999999887764 7999999742 112222 222333332222
Q ss_pred EcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCC
Q 000270 451 FSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSR 501 (1749)
Q Consensus 451 fSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~ 501 (1749)
..+++ .++++|+.|++|++|++..+
T Consensus 271 D~~tg--------------------------~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 271 DESTG--------------------------LIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred eCCCC--------------------------CEEEEEECCCeEEEEEccCC
Confidence 22223 68899999999999998753
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-21 Score=226.72 Aligned_cols=302 Identities=16% Similarity=0.184 Sum_probs=220.3
Q ss_pred CeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCc----eEEEe-cCCCCceEEEEeccCCCcceEEEeec
Q 000270 275 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL----PISVL-RGHTAAVTAIAFSPRPGSVYQLLSSS 349 (1749)
Q Consensus 275 g~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk----~l~tL-~gHs~~VtsIaFSPdg~~~~~LaSgS 349 (1749)
+..-..|.+|+..|.++++.|.|..|++||.|.+|++||+.... ..+.| ...+..|.+++|++.+. .|++.+
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~---~iLvvs 233 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD---QILVVS 233 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCC---eEEEEe
Confidence 34456678999999999999999999999999999999986431 12222 23456899999999987 777777
Q ss_pred CCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCC-CEEEEecCCCcEEEEeCCCCCCCC
Q 000270 350 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDD 428 (1749)
Q Consensus 350 ~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG-~~LaSGs~DGtVrIWDl~t~~~~~ 428 (1749)
.....+|+|-.......... ... -........+|...++|.+|+|.. ..|++++.||++|||++...+..
T Consensus 234 g~aqakl~DRdG~~~~e~~K---GDQ-----YI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q- 304 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEFSK---GDQ-----YIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ- 304 (641)
T ss_pred cCcceeEEccCCceeeeeec---cch-----hhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh-
Confidence 77889999976544332221 000 011123346789999999999964 57899999999999999754311
Q ss_pred CCCCCccee--eecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCcc
Q 000270 429 SDQPNHEID--VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPK 506 (1749)
Q Consensus 429 s~~~~~~i~--~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~ 506 (1749)
...+. ...+..-.++.++|++++ ..||+|+.||.|.+|+..+....
T Consensus 305 ----~qVik~k~~~g~Rv~~tsC~~nrdg--------------------------~~iAagc~DGSIQ~W~~~~~~v~-- 352 (641)
T KOG0772|consen 305 ----LQVIKTKPAGGKRVPVTSCAWNRDG--------------------------KLIAAGCLDGSIQIWDKGSRTVR-- 352 (641)
T ss_pred ----eeEEeeccCCCcccCceeeecCCCc--------------------------chhhhcccCCceeeeecCCcccc--
Confidence 11111 112345578999999998 78999999999999998642211
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCcccccCCCC--CeeEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEecCCC-
Q 000270 507 AARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR--GVNMIVWSLDNRFVLAAIMDCRICVWNAADG-SLVHSLTGHT- 582 (1749)
Q Consensus 507 ~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~--~VtsVafSPDG~~LATGs~DGtI~VWDl~tg-klv~tL~gH~- 582 (1749)
.....-.+|.. .|+||+||+||++|++-+.|++++|||++.. +++.+..+-.
T Consensus 353 ------------------------p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t 408 (641)
T KOG0772|consen 353 ------------------------PVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPT 408 (641)
T ss_pred ------------------------cceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCc
Confidence 01112234554 7999999999999999999999999999764 4666665532
Q ss_pred -CCeEEEEEcCCCCcEEEEEe------CCCcEEEEeCCCCceEEEEee--------eeccCCCEEEEEcCCCeEEEEE
Q 000270 583 -ESTYVLDVHPFNPRIAMSAG------YDGKTIVWDIWEGIPIRIYEI--------SRFRDGASIILSDDVGQLYILN 645 (1749)
Q Consensus 583 -~~VtsLafSPdd~rlLaSgs------~DGtIrVWDl~tGk~l~tl~~--------~~~sDG~~LAsgd~DG~I~IWd 645 (1749)
-+-+.++||| +.++|++|. .-|++.++|..+-..+..+.. .|++-=++|.+|+.||.++||=
T Consensus 409 ~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 409 PFPGTDCCFSP-DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred cCCCCccccCC-CceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 2457899999 677888875 357899999988877776643 2555667788888889998874
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-20 Score=226.88 Aligned_cols=334 Identities=19% Similarity=0.296 Sum_probs=251.8
Q ss_pred EccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCC--eEE-----EEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEE
Q 000270 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA--YCL-----ASCRGHEGDITDLAVSSNNALVASASNDCIIRV 311 (1749)
Q Consensus 239 L~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg--~~l-----~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrV 311 (1749)
|.||.+.|+++.|+|.+..|++++.|.++.||...+. --+ ....|..+...+..|+|++..+++-+.-|..++
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL 342 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence 4599999999999999999999999999999987643 222 223345667899999999999999999999999
Q ss_pred EECCCC---ceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCC
Q 000270 312 WRLPDG---LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 388 (1749)
Q Consensus 312 WDl~tg---k~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~ 388 (1749)
|...+. .....+.||.+.|+.|+|.|.|. +|++++.|.+-++|-.- |+...-.. ....
T Consensus 343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGe---flLsvs~DQTTRlFa~w-g~q~~wHE---------------iaRP 403 (764)
T KOG1063|consen 343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGE---FLLSVSLDQTTRLFARW-GRQQEWHE---------------IARP 403 (764)
T ss_pred EeccCccceeeccccccccccceeeeecCCCC---EEEEeccccceeeeccc-ccccceee---------------eccc
Confidence 983332 33445679999999999999998 99999999999998654 22111111 1223
Q ss_pred CCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCC----------CCC----------------CCC------------
Q 000270 389 GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKP----------NTD----------------DSD------------ 430 (1749)
Q Consensus 389 ~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~----------~~~----------------~s~------------ 430 (1749)
+-|+..++|++|-+....|++|.....+|+|++... .+. .+.
T Consensus 404 QiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~ 483 (764)
T KOG1063|consen 404 QIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGG 483 (764)
T ss_pred ccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccccc
Confidence 568889999999986678999999999999986210 000 000
Q ss_pred -----------------------------CCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCC
Q 000270 431 -----------------------------QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCH 481 (1749)
Q Consensus 431 -----------------------------~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~ 481 (1749)
.....+..+.||...|++++.+|++
T Consensus 484 ~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~g-------------------------- 537 (764)
T KOG1063|consen 484 EAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTG-------------------------- 537 (764)
T ss_pred ccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCC--------------------------
Confidence 0011223456788888888888876
Q ss_pred CEEEEEeCCC-----cEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEE
Q 000270 482 DNIVTCSRDG-----SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVL 556 (1749)
Q Consensus 482 ~~LaSgS~DG-----tIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LA 556 (1749)
+++++++... .|++|+..+.. ..+.+.+|.-.|+.++|||||++|+
T Consensus 538 nliASaCKS~~~ehAvI~lw~t~~W~-----------------------------~~~~L~~HsLTVT~l~FSpdg~~LL 588 (764)
T KOG1063|consen 538 NLIASACKSSLKEHAVIRLWNTANWL-----------------------------QVQELEGHSLTVTRLAFSPDGRYLL 588 (764)
T ss_pred CEEeehhhhCCccceEEEEEeccchh-----------------------------hhheecccceEEEEEEECCCCcEEE
Confidence 7888887654 48899876522 2345778999999999999999999
Q ss_pred EEeCCCeEEEEECCCCce----EEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCC--ceEEEEee-------
Q 000270 557 AAIMDCRICVWNAADGSL----VHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG--IPIRIYEI------- 623 (1749)
Q Consensus 557 TGs~DGtI~VWDl~tgkl----v~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tG--k~l~tl~~------- 623 (1749)
+.+.|.++.+|....... ...++.|+.-|++..|+| +..+++|++.|.+|+||....+ +.+..+..
T Consensus 589 svsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aV 667 (764)
T KOG1063|consen 589 SVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP-DEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAV 667 (764)
T ss_pred EeecCceEEeeeeecccchhhhhccccccceEEEEcccCc-ccceeEEecCCceEEEEeccCchhhhhhhhchhccCCce
Confidence 999999999999854322 234678999999999999 7778999999999999998887 44333211
Q ss_pred ---eecc-----CCCEEEEEcCCCeEEEEECC
Q 000270 624 ---SRFR-----DGASIILSDDVGQLYILNTG 647 (1749)
Q Consensus 624 ---~~~s-----DG~~LAsgd~DG~I~IWdl~ 647 (1749)
...+ .+..+++|-..|.|.||...
T Consensus 668 TAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 668 TAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred eeEEeeccccccccceEEEEecccEEEEEecc
Confidence 1111 45588999999999999863
|
|
| >PF06507 Auxin_resp: Auxin response factor; InterPro: IPR010525 This pattern represents a conserved region of auxin-responsive transcription factors | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-22 Score=191.68 Aligned_cols=76 Identities=18% Similarity=0.478 Sum_probs=72.4
Q ss_pred CCceEEEEeCCCCCCCCeEeehhhHHHHHcCCcCCCCceEEeecCCCCCCCceEEEEEEEecCCCCC-CCCCCCceeE
Q 000270 1526 SNMTFRLTLPEVTGFPDFLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSE-FPDSPWERYT 1602 (1749)
Q Consensus 1526 ~~~~F~v~y~~~~~~~dFiV~~~~y~~a~~~~w~~G~rf~m~fe~e~~~~~~~~~GtI~~~~~~~p~-~p~S~W~~l~ 1602 (1749)
++..|.|+|+||++.+||||++++|++|++++|++||||||.||+||. ..++|+|||++|++.||. ||+|+||||+
T Consensus 7 ~~~~F~V~Y~PRa~~sEFVV~~~k~~~al~~~~~~GmRfkM~fE~eds-~~~~~~GtI~~v~~~dp~~w~~S~WR~Lq 83 (83)
T PF06507_consen 7 TGSPFEVFYYPRASPSEFVVPASKYDKALNHPWSVGMRFKMRFETEDS-SERRWQGTIVGVSDLDPIRWPGSKWRMLQ 83 (83)
T ss_pred cCCeEEEEECCCCCCcceEEEHHHHHHHhcCCCCCCcEEEEEeccCCC-ccceeeeEEeEeeccCCCCCCCCCcccCc
Confidence 578999999999999999999999999999999999999999999987 668889999999999994 9999999996
|
The plant hormone auxin (indole-3-acetic acid) can regulate the gene expression of several families, including Aux/IAA, GH3 and SAUR families. Two related families of proteins, Aux/IAA proteins (IPR003311 from INTERPRO) and the auxin response factors (ARF), are key regulators of auxin-modulated gene expression []. There are multiple ARF proteins, some of which activate, while others repress transcription. ARF proteins bind to auxin-responsive cis-acting promoter elements (AuxREs) using an N-terminal DNA-binding domain. It is thought that Aux/IAA proteins activate transcription by modifying ARF activity through the C-terminal protein-protein interaction domains (IPR011525 from INTERPRO) found in both Aux/IAA and ARF proteins. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0009725 response to hormone stimulus, 0005634 nucleus |
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.2e-22 Score=226.82 Aligned_cols=277 Identities=18% Similarity=0.330 Sum_probs=225.4
Q ss_pred eEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCc--eEEEecCCCCceEEEEeccCCCcceEEEeecCCCc
Q 000270 276 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL--PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGT 353 (1749)
Q Consensus 276 ~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk--~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGt 353 (1749)
.....+..|.+.|..+.|-++...|++|+.|..|++|++..++ .+.+|.|..+.|+.+.|.+++. ++++++.|+.
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~---~~iAas~d~~ 242 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNK---HVIAASNDKN 242 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCc---eEEeecCCCc
Confidence 3445567899999999999998999999999999999987665 6788889999999999999987 8899999999
Q ss_pred EEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCC
Q 000270 354 CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN 433 (1749)
Q Consensus 354 IrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~ 433 (1749)
+++|++...+...++ .+|.+.|+++.|......+++|+.|.+|++||+....
T Consensus 243 ~r~Wnvd~~r~~~TL--------------------sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~-------- 294 (459)
T KOG0288|consen 243 LRLWNVDSLRLRHTL--------------------SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY-------- 294 (459)
T ss_pred eeeeeccchhhhhhh--------------------cccccceeeehhhccccceeeccccchhhhhhhhhhh--------
Confidence 999999988766555 4699999999999887779999999999999996532
Q ss_pred cceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccc
Q 000270 434 HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQA 513 (1749)
Q Consensus 434 ~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~ 513 (1749)
+..+. -....+..|+.++ ..+++|-.|++|++||.++..+
T Consensus 295 -C~kt~-l~~S~cnDI~~~~----------------------------~~~~SgH~DkkvRfwD~Rs~~~---------- 334 (459)
T KOG0288|consen 295 -CSKTV-LPGSQCNDIVCSI----------------------------SDVISGHFDKKVRFWDIRSADK---------- 334 (459)
T ss_pred -eeccc-cccccccceEecc----------------------------eeeeecccccceEEEeccCCce----------
Confidence 22111 1122333444331 4788999999999999886331
Q ss_pred cccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCC----CCCeEEEE
Q 000270 514 YHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH----TESTYVLD 589 (1749)
Q Consensus 514 ~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH----~~~VtsLa 589 (1749)
... .+..+.|+++..+++|..|.+++.|.++.+.|+.+.+..+++.+. ....+.+.
T Consensus 335 -------------------~~s-v~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv 394 (459)
T KOG0288|consen 335 -------------------TRS-VPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV 394 (459)
T ss_pred -------------------eeE-eecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeE
Confidence 112 223348999999999999999999999999999999988887642 23488999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEeee----------eccCCCEEEEEcCCCeEEEE
Q 000270 590 VHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS----------RFRDGASIILSDDVGQLYIL 644 (1749)
Q Consensus 590 fSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~----------~~sDG~~LAsgd~DG~I~IW 644 (1749)
||| ++.|+++||.||.|+||++.+|++...+... |.+.|..|++++.++.+.+|
T Consensus 395 fSp-d~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 395 FSP-DGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ECC-CCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 999 8899999999999999999999998877642 33478888888888888888
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.8e-21 Score=222.66 Aligned_cols=256 Identities=20% Similarity=0.311 Sum_probs=209.3
Q ss_pred cCCCCeEEEEEcCCC-cEEEEEeCCCeEEEEECCCC----------ceEEEecCCCCceEEEEeccCCCcceEEEeecCC
Q 000270 283 GHEGDITDLAVSSNN-ALVASASNDCIIRVWRLPDG----------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD 351 (1749)
Q Consensus 283 gHs~~VtsLafSPDg-~lLASGS~DGtIrVWDl~tg----------k~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~D 351 (1749)
.|.+.|..+..-|.. .+||+++..+.|.|||.... .+-..|.+|...-++++|++... ..|++++.|
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~--g~Lls~~~d 199 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQE--GTLLSGSDD 199 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccc--eeEeeccCC
Confidence 599999999999955 56777788899999998543 12237889999889999999865 389999999
Q ss_pred CcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcC-CCCEEEEecCCCcEEEEeCCCCCCCCCC
Q 000270 352 GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSD 430 (1749)
Q Consensus 352 GtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSP-DG~~LaSGs~DGtVrIWDl~t~~~~~s~ 430 (1749)
++|++||+....... ....+...+.+|...|..++|++ +..+|++++.|+.+.|||+++.
T Consensus 200 ~~i~lwdi~~~~~~~-------------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~------ 260 (422)
T KOG0264|consen 200 HTICLWDINAESKED-------------KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN------ 260 (422)
T ss_pred CcEEEEeccccccCC-------------ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC------
Confidence 999999998654321 11122334567899999999999 5568999999999999999852
Q ss_pred CCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCcccccc
Q 000270 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1749)
Q Consensus 431 ~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~ 510 (1749)
..+......+|.+.|+|++|+|-. ...||+||.|++|.+||++...
T Consensus 261 -~~~~~~~~~ah~~~vn~~~fnp~~-------------------------~~ilAT~S~D~tV~LwDlRnL~-------- 306 (422)
T KOG0264|consen 261 -TSKPSHSVKAHSAEVNCVAFNPFN-------------------------EFILATGSADKTVALWDLRNLN-------- 306 (422)
T ss_pred -CCCCcccccccCCceeEEEeCCCC-------------------------CceEEeccCCCcEEEeechhcc--------
Confidence 133455678999999999999865 3689999999999999999622
Q ss_pred ccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEEECCCC--------------ceE
Q 000270 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN-RFVLAAIMDCRICVWNAADG--------------SLV 575 (1749)
Q Consensus 511 ~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG-~~LATGs~DGtI~VWDl~tg--------------klv 575 (1749)
.+...+.+|...|.+|.|||.. ..||+++.|+++.|||+..- +++
T Consensus 307 --------------------~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEll 366 (422)
T KOG0264|consen 307 --------------------KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELL 366 (422)
T ss_pred --------------------cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCccee
Confidence 2566788999999999999976 57788899999999998641 344
Q ss_pred EEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 000270 576 HSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1749)
Q Consensus 576 ~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~ 613 (1749)
..-.||+..|..+.|+|..+..|+|++.|+.+.||.+.
T Consensus 367 F~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 367 FIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred EEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 56679999999999999999999999999999999985
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.4e-21 Score=221.99 Aligned_cols=264 Identities=22% Similarity=0.329 Sum_probs=207.9
Q ss_pred EccCCCCEEEEEECCCC-CEEEEEeCCcEEEEEECCCCe----------EEEEEccCCCCeEEEEEcCC-CcEEEEEeCC
Q 000270 239 VRGHRNAVYCAIFDRSG-RYVITGSDDRLVKIWSMETAY----------CLASCRGHEGDITDLAVSSN-NALVASASND 306 (1749)
Q Consensus 239 L~GH~~~Vt~VaFSPDG-~~LATGS~DGtVrIWDl~Tg~----------~l~tL~gHs~~VtsLafSPD-g~lLASGS~D 306 (1749)
.--|.+.|+.+.+-|.. .+|||++..+.|.|||..+-. .-.+|.||...-++|+|++. .-.|++|+.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 34699999999999965 577788889999999986421 12368899998899999994 4588999999
Q ss_pred CeEEEEECCCC-------ceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccC
Q 000270 307 CIIRVWRLPDG-------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAG 379 (1749)
Q Consensus 307 GtIrVWDl~tg-------k~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g 379 (1749)
++|++||+... .+...+.+|...|..++|++... .+|++++.|+.+.|||++++....
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~--~lF~sv~dd~~L~iwD~R~~~~~~------------- 264 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE--DLFGSVGDDGKLMIWDTRSNTSKP------------- 264 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccch--hhheeecCCCeEEEEEcCCCCCCC-------------
Confidence 99999999653 24567889999999999999765 378999999999999999631111
Q ss_pred CCCCCCCCCCCCCCceEEEEEcC-CCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCccc
Q 000270 380 RNMAPSSSAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVAS 458 (1749)
Q Consensus 380 ~~~~~~~s~~~h~~~Vt~LafSP-DG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as 458 (1749)
.....+|.+.|.|++|+| ++..||+|+.|++|.+||+++. ...+.++.+|...|..|.|+|..
T Consensus 265 -----~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL--------~~~lh~~e~H~dev~~V~WSPh~--- 328 (422)
T KOG0264|consen 265 -----SHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL--------NKPLHTFEGHEDEVFQVEWSPHN--- 328 (422)
T ss_pred -----cccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhc--------ccCceeccCCCcceEEEEeCCCC---
Confidence 122357899999999999 6678999999999999999864 34788999999999999999975
Q ss_pred ccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccC
Q 000270 459 RFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 538 (1749)
Q Consensus 459 ~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~ 538 (1749)
...|++++.|+.+.+||+..-. ... ............+..-.+
T Consensus 329 ----------------------etvLASSg~D~rl~vWDls~ig---~eq------------~~eda~dgppEllF~HgG 371 (422)
T KOG0264|consen 329 ----------------------ETVLASSGTDRRLNVWDLSRIG---EEQ------------SPEDAEDGPPELLFIHGG 371 (422)
T ss_pred ----------------------CceeEecccCCcEEEEeccccc---ccc------------ChhhhccCCcceeEEecC
Confidence 3689999999999999997411 000 001111112234456678
Q ss_pred CCCCeeEEEEcCCCCE-EEEEeCCCeEEEEECC
Q 000270 539 TPRGVNMIVWSLDNRF-VLAAIMDCRICVWNAA 570 (1749)
Q Consensus 539 h~~~VtsVafSPDG~~-LATGs~DGtI~VWDl~ 570 (1749)
|...|..+.|+|+..+ |++++.|+.+.||.+.
T Consensus 372 H~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 372 HTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 8899999999998865 6678899999999975
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-20 Score=208.08 Aligned_cols=291 Identities=19% Similarity=0.302 Sum_probs=211.9
Q ss_pred EEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecC
Q 000270 246 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRG 325 (1749)
Q Consensus 246 Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~g 325 (1749)
..|+.|++-|.+||+|+.||.|.|||+.|...-+.|.+|..+|++++||+||+.|+|+|.|..|.+||+..|.++..++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 7899999999999999999999999999999888999999999999999999999999999999999999999998887
Q ss_pred CCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCC
Q 000270 326 HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT 405 (1749)
Q Consensus 326 Hs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~ 405 (1749)
..++|+.+.|+|.... .+++.-.+..-.+-++..+. ..+ ++... .........+..|.+.|+
T Consensus 105 f~spv~~~q~hp~k~n--~~va~~~~~sp~vi~~s~~~--h~~-Lp~d~-------------d~dln~sas~~~fdr~g~ 166 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRN--KCVATIMEESPVVIDFSDPK--HSV-LPKDD-------------DGDLNSSASHGVFDRRGK 166 (405)
T ss_pred ccCccceeeeccccCC--eEEEEEecCCcEEEEecCCc--eee-ccCCC-------------ccccccccccccccCCCC
Confidence 6789999999998653 33333333333444443321 111 11000 001111123347899999
Q ss_pred EEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCC-CCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEE
Q 000270 406 VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE-NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI 484 (1749)
Q Consensus 406 ~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~-~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~L 484 (1749)
++++|...|.+.+++..+. .++..++--. ..|..|.++..+ ..|
T Consensus 167 yIitGtsKGkllv~~a~t~---------e~vas~rits~~~IK~I~~s~~g--------------------------~~l 211 (405)
T KOG1273|consen 167 YIITGTSKGKLLVYDAETL---------ECVASFRITSVQAIKQIIVSRKG--------------------------RFL 211 (405)
T ss_pred EEEEecCcceEEEEecchh---------eeeeeeeechheeeeEEEEeccC--------------------------cEE
Confidence 9999999999999999763 3444444433 677788888766 899
Q ss_pred EEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccC--CCCCeeEEEEcCCCCEEEEEe-CC
Q 000270 485 VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP--TPRGVNMIVWSLDNRFVLAAI-MD 561 (1749)
Q Consensus 485 aSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~--h~~~VtsVafSPDG~~LATGs-~D 561 (1749)
+.-+.|..||.|++..--..+. .....+.+.+.. ....-.+++||.+|.||++|+ ..
T Consensus 212 iiNtsDRvIR~ye~~di~~~~r--------------------~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~a 271 (405)
T KOG1273|consen 212 IINTSDRVIRTYEISDIDDEGR--------------------DGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARA 271 (405)
T ss_pred EEecCCceEEEEehhhhcccCc--------------------cCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccc
Confidence 9999999999998773110000 000111111111 122356789999999999887 34
Q ss_pred CeEEEEECCCCceEEEecCCC-CCeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 000270 562 CRICVWNAADGSLVHSLTGHT-ESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1749)
Q Consensus 562 GtI~VWDl~tgklv~tL~gH~-~~VtsLafSPdd~rlLaSgs~DGtIrVWDl 612 (1749)
..++||....|.+++.|.|.. .....+.|+|.. -++++. ..|.|+||..
T Consensus 272 HaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~r-p~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 272 HALYIWEKSIGSLVKILHGTKGEELLDVNWHPVR-PIIASI-ASGVVYIWAV 321 (405)
T ss_pred eeEEEEecCCcceeeeecCCchhheeecccccce-eeeeec-cCCceEEEEe
Confidence 579999999999999999987 567889999943 344444 6677777775
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-20 Score=205.85 Aligned_cols=302 Identities=21% Similarity=0.341 Sum_probs=230.2
Q ss_pred EccCCCCEEEEEECC-CCCEEEEEeCCcEEEEEECCCCe-------EEEE--------EccCCCCeEEEEEcC-CCcEEE
Q 000270 239 VRGHRNAVYCAIFDR-SGRYVITGSDDRLVKIWSMETAY-------CLAS--------CRGHEGDITDLAVSS-NNALVA 301 (1749)
Q Consensus 239 L~GH~~~Vt~VaFSP-DG~~LATGS~DGtVrIWDl~Tg~-------~l~t--------L~gHs~~VtsLafSP-Dg~lLA 301 (1749)
.+-|.+.|+++.+.+ .|+|+++|+.||.|.|||++... ..+. -.+|.-.|.++.|-| |..++.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 457899999999998 58999999999999999997432 1111 136888999999999 777899
Q ss_pred EEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCC
Q 000270 302 SASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRN 381 (1749)
Q Consensus 302 SGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~ 381 (1749)
+++.|.+++|||..+.+....+. ..+.|+.-+++|-.....++|+|..+-.|++-|+..|.+...+
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~L------------- 184 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTL------------- 184 (397)
T ss_pred cccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeee-------------
Confidence 99999999999999988777776 6678999999997655567888999999999999999876665
Q ss_pred CCCCCCCCCCCCceEEEEEcCCCC-EEEEecCCCcEEEEeCCCCCC-----CCCC-CCCcceeeecCCCCCeEEEEEcCC
Q 000270 382 MAPSSSAGPQSHQIFCCAFNANGT-VFVTGSSDTLARVWNACKPNT-----DDSD-QPNHEIDVLSGHENDVNYVQFSGC 454 (1749)
Q Consensus 382 ~~~~~s~~~h~~~Vt~LafSPDG~-~LaSGs~DGtVrIWDl~t~~~-----~~s~-~~~~~i~~l~gH~~~V~sVafSpd 454 (1749)
.+|.+.|.++.|+|... .|++|+.||.|++||++.... +... .....+..-..|.+.|+.++|+.+
T Consensus 185 -------sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd 257 (397)
T KOG4283|consen 185 -------SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSD 257 (397)
T ss_pred -------ccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeeccc
Confidence 57899999999999776 578899999999999976421 0000 111122345678999999999988
Q ss_pred CcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcc
Q 000270 455 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ 534 (1749)
Q Consensus 455 g~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~ 534 (1749)
+ .++++++.|..+++|+..+++..... .+++.
T Consensus 258 ~--------------------------~~l~~~gtd~r~r~wn~~~G~ntl~~----------------------~g~~~ 289 (397)
T KOG4283|consen 258 A--------------------------RYLASCGTDDRIRVWNMESGRNTLRE----------------------FGPII 289 (397)
T ss_pred c--------------------------hhhhhccCccceEEeecccCcccccc----------------------ccccc
Confidence 7 79999999999999999876521110 00000
Q ss_pred cccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 000270 535 RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1749)
Q Consensus 535 ~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl 612 (1749)
.-....-.+. +. +.+...++.--.++.+.++++-.|..++.+.+|-..|.+.++-| +=....++..|+.|..|-.
T Consensus 290 ~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~-~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 290 HNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRP-DFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecC-chhhhhccccCCccccccc
Confidence 0000111111 22 33444444445568999999999999999999988899999988 5566779999999999976
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.9e-21 Score=222.04 Aligned_cols=284 Identities=20% Similarity=0.312 Sum_probs=223.3
Q ss_pred EEeCC-cEEEEEECCCCeEEEEEccC-CCCeEEEEEcCCCcEEEEEeC-CCeEEEEECCCCceEEEecCCCCceEEEEec
Q 000270 260 TGSDD-RLVKIWSMETAYCLASCRGH-EGDITDLAVSSNNALVASASN-DCIIRVWRLPDGLPISVLRGHTAAVTAIAFS 336 (1749)
Q Consensus 260 TGS~D-GtVrIWDl~Tg~~l~tL~gH-s~~VtsLafSPDg~lLASGS~-DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFS 336 (1749)
+++.| ..+.+||+.||..+.++++. ...-.++..- .+.+++++.. ...|.+|.+..........--.++|.+++-+
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASS 90 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecC
Confidence 34444 45999999999999998864 2222222222 3456666644 4589999986554443233356889999999
Q ss_pred cCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcE
Q 000270 337 PRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLA 416 (1749)
Q Consensus 337 Pdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtV 416 (1749)
|.|. +|+.|+..|.|.+|.+.+|..+..+ .+|-..|+|+.|+-||.+|++|+.||.|
T Consensus 91 n~G~---~l~ag~i~g~lYlWelssG~LL~v~--------------------~aHYQ~ITcL~fs~dgs~iiTgskDg~V 147 (476)
T KOG0646|consen 91 NLGY---FLLAGTISGNLYLWELSSGILLNVL--------------------SAHYQSITCLKFSDDGSHIITGSKDGAV 147 (476)
T ss_pred CCce---EEEeecccCcEEEEEeccccHHHHH--------------------HhhccceeEEEEeCCCcEEEecCCCccE
Confidence 9985 7777779999999999999987765 3588889999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEE
Q 000270 417 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 496 (1749)
Q Consensus 417 rIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIW 496 (1749)
.+|.+..--..........+..+..|.-+|+.+...+.+. ..+|+|+|.|.++++|
T Consensus 148 ~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~------------------------~~rl~TaS~D~t~k~w 203 (476)
T KOG0646|consen 148 LVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGT------------------------NARLYTASEDRTIKLW 203 (476)
T ss_pred EEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCc------------------------cceEEEecCCceEEEE
Confidence 9999865433333335667888999999999999887651 2689999999999999
Q ss_pred ecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCC-----
Q 000270 497 IPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD----- 571 (1749)
Q Consensus 497 Dl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~t----- 571 (1749)
|+..+..+.. ...+..+.+++.+|-++.+++|+.+|.|.+.++..
T Consensus 204 dlS~g~LLlt------------------------------i~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~ 253 (476)
T KOG0646|consen 204 DLSLGVLLLT------------------------------ITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQS 253 (476)
T ss_pred EeccceeeEE------------------------------EecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccc
Confidence 9987543221 12345789999999999999999999999988743
Q ss_pred -----------CceEEEecCCCC--CeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEe
Q 000270 572 -----------GSLVHSLTGHTE--STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE 622 (1749)
Q Consensus 572 -----------gklv~tL~gH~~--~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~ 622 (1749)
+..+..+.||.+ .|++|+.+- ++.+|++|+.||.|+|||+.+.++++++.
T Consensus 254 ~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 254 AGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred ccccccccccccceeeeeccccCCcceeEEEEec-CccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 234567889988 999999998 88999999999999999999999998876
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-20 Score=224.80 Aligned_cols=312 Identities=19% Similarity=0.257 Sum_probs=216.1
Q ss_pred EEECC---CCCEEEEEeCCcEEEEEECCCCeE------EEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCce
Q 000270 249 AIFDR---SGRYVITGSDDRLVKIWSMETAYC------LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLP 319 (1749)
Q Consensus 249 VaFSP---DG~~LATGS~DGtVrIWDl~Tg~~------l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~ 319 (1749)
+.|++ ...+||.+.+||.|.++|...... ++.+..|...|.++.|-|...+|++++.|.+|++||+.++++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 45655 346899999999999999865332 355668999999999999777999999999999999999988
Q ss_pred EEE--ecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccc------eeecCCCCC-cccCCCCCCCCCCCC
Q 000270 320 ISV--LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSP------RIYIPRPSD-AVAGRNMAPSSSAGP 390 (1749)
Q Consensus 320 l~t--L~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~------~l~~~~~~~-~~~g~~~~~~~s~~~ 390 (1749)
+.. +.||.+.|.+++|.|... ..|++|+.||.|.|||++...... .++...... ...............
T Consensus 135 ~G~~~~~GH~~SvkS~cf~~~n~--~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 135 VGGRLNLGHTGSVKSECFMPTNP--AVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred ecceeecccccccchhhhccCCC--cceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 876 889999999999999876 479999999999999998554110 010000000 000000001111223
Q ss_pred CCCceEE---EEEcCCCCEEEEecC-CCcEEEEeCCCCCCCCCCCCCcceeeecCC---CCCeEEEEEcCCCcccccccc
Q 000270 391 QSHQIFC---CAFNANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDVLSGH---ENDVNYVQFSGCAVASRFSLA 463 (1749)
Q Consensus 391 h~~~Vt~---LafSPDG~~LaSGs~-DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH---~~~V~sVafSpdg~as~~s~~ 463 (1749)
+...|.. +.+..|...||+++. |+.|+|||+++....-..++.. ...+..| .-.+.++.....|
T Consensus 213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~-~~~~~t~skrs~G~~nL~lDssG-------- 283 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRG-SDKYPTHSKRSVGQVNLILDSSG-------- 283 (720)
T ss_pred ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCc-ccCccCcccceeeeEEEEecCCC--------
Confidence 3344444 445567778888877 9999999998765433333221 1222223 2234444444433
Q ss_pred cCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCC-
Q 000270 464 DSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRG- 542 (1749)
Q Consensus 464 ~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~- 542 (1749)
.+|++.+.|+.|++|++.+-. ..++..+.++...
T Consensus 284 ------------------t~L~AsCtD~sIy~ynm~s~s---------------------------~sP~~~~sg~~~~s 318 (720)
T KOG0321|consen 284 ------------------TYLFASCTDNSIYFYNMRSLS---------------------------ISPVAEFSGKLNSS 318 (720)
T ss_pred ------------------CeEEEEecCCcEEEEeccccC---------------------------cCchhhccCcccce
Confidence 566666679999999998622 1122222222211
Q ss_pred -eeEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 000270 543 -VNMIVWSLDNRFVLAAIMDCRICVWNAADGS-LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI 616 (1749)
Q Consensus 543 -VtsVafSPDG~~LATGs~DGtI~VWDl~tgk-lv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk 616 (1749)
...-..+||+.+|++|+.|...++|.+.+.+ ....+.||...|++++|.|..-.-++++++|.+++||++..|-
T Consensus 319 f~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 319 FYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred eeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 2223568999999999999999999998765 4567889999999999998665667788999999999995553
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.6e-20 Score=206.69 Aligned_cols=281 Identities=16% Similarity=0.214 Sum_probs=213.1
Q ss_pred CCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEE
Q 000270 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISV 322 (1749)
Q Consensus 243 ~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~t 322 (1749)
...|..|.|+|.+..|+.++.||++++|++....+...++ |..++.+++|.+ ...+++|+.||.|+++|+.++....
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~- 89 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ- 89 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCccee-
Confidence 5789999999999999999999999999999876655555 899999999986 4578899999999999999887544
Q ss_pred ecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcC
Q 000270 323 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA 402 (1749)
Q Consensus 323 L~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSP 402 (1749)
+..|...|.||.+++-.+ .+++|+.|++|++||.+.......+ .....|.|+..
T Consensus 90 igth~~~i~ci~~~~~~~---~vIsgsWD~~ik~wD~R~~~~~~~~---------------------d~~kkVy~~~v-- 143 (323)
T KOG1036|consen 90 IGTHDEGIRCIEYSYEVG---CVISGSWDKTIKFWDPRNKVVVGTF---------------------DQGKKVYCMDV-- 143 (323)
T ss_pred eccCCCceEEEEeeccCC---eEEEcccCccEEEEecccccccccc---------------------ccCceEEEEec--
Confidence 456999999999998765 8999999999999999864333222 12336888876
Q ss_pred CCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCC
Q 000270 403 NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHD 482 (1749)
Q Consensus 403 DG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~ 482 (1749)
.|..|++|+.+..|.+||+++..... ...-....-.+.||++.|++ .
T Consensus 144 ~g~~LvVg~~~r~v~iyDLRn~~~~~-------q~reS~lkyqtR~v~~~pn~--------------------------e 190 (323)
T KOG1036|consen 144 SGNRLVVGTSDRKVLIYDLRNLDEPF-------QRRESSLKYQTRCVALVPNG--------------------------E 190 (323)
T ss_pred cCCEEEEeecCceEEEEEcccccchh-------hhccccceeEEEEEEEecCC--------------------------C
Confidence 46789999999999999998643211 11123345578899999865 5
Q ss_pred EEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCC
Q 000270 483 NIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC 562 (1749)
Q Consensus 483 ~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DG 562 (1749)
-+++++.||.|.+=.+...... ....|.++..... ..-.....+|++|+|+|-...||||+.||
T Consensus 191 Gy~~sSieGRVavE~~d~s~~~-----~skkyaFkCHr~~-----------~~~~~~~yPVNai~Fhp~~~tfaTgGsDG 254 (323)
T KOG1036|consen 191 GYVVSSIEGRVAVEYFDDSEEA-----QSKKYAFKCHRLS-----------EKDTEIIYPVNAIAFHPIHGTFATGGSDG 254 (323)
T ss_pred ceEEEeecceEEEEccCCchHH-----hhhceeEEeeecc-----------cCCceEEEEeceeEeccccceEEecCCCc
Confidence 7889999999988665543100 0011111110000 00001123699999999999999999999
Q ss_pred eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEe
Q 000270 563 RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAG 602 (1749)
Q Consensus 563 tI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs 602 (1749)
.|.+||+.+.+.+..|......|.+++|+. ++..||.|+
T Consensus 255 ~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~-dG~~LAia~ 293 (323)
T KOG1036|consen 255 IVNIWDLFNRKRLKQLAKYETSISSLSFSM-DGSLLAIAS 293 (323)
T ss_pred eEEEccCcchhhhhhccCCCCceEEEEecc-CCCeEEEEe
Confidence 999999999999999988888899999999 566666665
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-19 Score=218.15 Aligned_cols=348 Identities=16% Similarity=0.153 Sum_probs=254.8
Q ss_pred CCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeE-EEEEccC-CCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCce
Q 000270 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC-LASCRGH-EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLP 319 (1749)
Q Consensus 242 H~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~-l~tL~gH-s~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~ 319 (1749)
--..|+|+||+.+.+.||.+-.||.|-||++..+-. ...+.++ ...|.+|+|+ ++..|.+.+.+|.|.-||+.+++.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCce
Confidence 346899999999999999999999999999987544 3445555 5679999999 555678888999999999999999
Q ss_pred EEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEE
Q 000270 320 ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCA 399 (1749)
Q Consensus 320 l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~La 399 (1749)
+..+....+.|++++.+|.+. .++.|+.||.+.++++..+.......+ ....+.|.+++
T Consensus 103 ~~~~d~~gg~IWsiai~p~~~---~l~IgcddGvl~~~s~~p~~I~~~r~l------------------~rq~sRvLsls 161 (691)
T KOG2048|consen 103 KYNIDSNGGAIWSIAINPENT---ILAIGCDDGVLYDFSIGPDKITYKRSL------------------MRQKSRVLSLS 161 (691)
T ss_pred eEEecCCCcceeEEEeCCccc---eEEeecCCceEEEEecCCceEEEEeec------------------ccccceEEEEE
Confidence 999999999999999999987 899999999888888877665443322 33467899999
Q ss_pred EcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecC-CCCCeEEEEEcCCCcccccccccCCCCCCCCcccccc
Q 000270 400 FNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG-HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1749)
Q Consensus 400 fSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~g-H~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~ 478 (1749)
|+|++..|++|+.||.|++||+.++.... .....+..+.. ...-|++|.|-.+
T Consensus 162 w~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~--~~~~~~d~l~k~~~~iVWSv~~Lrd------------------------ 215 (691)
T KOG2048|consen 162 WNPTGTKIAGGSIDGVIRIWDVKSGQTLH--IITMQLDRLSKREPTIVWSVLFLRD------------------------ 215 (691)
T ss_pred ecCCccEEEecccCceEEEEEcCCCceEE--EeeecccccccCCceEEEEEEEeec------------------------
Confidence 99999999999999999999997643211 00000111111 3345677777654
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEE
Q 000270 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA 558 (1749)
Q Consensus 479 ~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATG 558 (1749)
..|++|..-|+|.+||... +..++.+..|...|.+++..+++.+|+++
T Consensus 216 ---~tI~sgDS~G~V~FWd~~~-----------------------------gTLiqS~~~h~adVl~Lav~~~~d~vfsa 263 (691)
T KOG2048|consen 216 ---STIASGDSAGTVTFWDSIF-----------------------------GTLIQSHSCHDADVLALAVADNEDRVFSA 263 (691)
T ss_pred ---CcEEEecCCceEEEEcccC-----------------------------cchhhhhhhhhcceeEEEEcCCCCeEEEc
Confidence 4899999999999999875 33455667788999999999999999999
Q ss_pred eCCCeEEEEECCCCce----EEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeeeccCC-----
Q 000270 559 IMDCRICVWNAADGSL----VHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRDG----- 629 (1749)
Q Consensus 559 s~DGtI~VWDl~tgkl----v~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~~~sDG----- 629 (1749)
+.|+.|..|...+++. ......|...|.+++..+ ..+++||.|+++.+=....-+.........++-+
T Consensus 264 Gvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~---~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~ 340 (691)
T KOG2048|consen 264 GVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE---NALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSV 340 (691)
T ss_pred cCCCceEEEEecCCccceeeeccccCCcccceeeeeec---ceEEecceeeEEEEccccccCchhhhccccccccceeec
Confidence 9999999998876643 223457888999999987 2889999999998866543211111111122222
Q ss_pred ---CEEEEEcCCCeEEEEECCCCccccccc---------------ceeeecCCCcceeEcC
Q 000270 630 ---ASIILSDDVGQLYILNTGQGESQKDAK---------------YDQFFLGDYRPLVQDT 672 (1749)
Q Consensus 630 ---~~LAsgd~DG~I~IWdl~tGe~~k~~~---------------~~~fFs~D~r~Lv~d~ 672 (1749)
++|..-=....+.+|.+++...+..+. .....+||+.+++...
T Consensus 341 a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st 401 (691)
T KOG2048|consen 341 APENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAIST 401 (691)
T ss_pred CccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEee
Confidence 233333334466777777763331111 1245678888775443
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-20 Score=215.87 Aligned_cols=257 Identities=19% Similarity=0.317 Sum_probs=213.7
Q ss_pred ccccccceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCC
Q 000270 228 TMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDC 307 (1749)
Q Consensus 228 ~~~~~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DG 307 (1749)
...+..+.+.+|+||...|+.+.|+++...+++++.|-.|+||.+...........|.++|+.+..+|.|.||++++.||
T Consensus 246 ~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~ 325 (506)
T KOG0289|consen 246 FDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDG 325 (506)
T ss_pred EecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCc
Confidence 35566788899999999999999999999999999999999999988888888899999999999999999999999999
Q ss_pred eEEEEECCCCceEEEecC--CCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCC
Q 000270 308 IIRVWRLPDGLPISVLRG--HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS 385 (1749)
Q Consensus 308 tIrVWDl~tgk~l~tL~g--Hs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~ 385 (1749)
++.+.|+.+|.++..... ..-.+++++|+|||- +|.+|..||.|+|||+..+..+..+
T Consensus 326 ~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL---ifgtgt~d~~vkiwdlks~~~~a~F----------------- 385 (506)
T KOG0289|consen 326 TWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL---IFGTGTPDGVVKIWDLKSQTNVAKF----------------- 385 (506)
T ss_pred eEEEEEccCCcEEEEEeeccccceeEEeeEcCCce---EEeccCCCceEEEEEcCCccccccC-----------------
Confidence 999999999998887653 234589999999986 8999999999999999877644333
Q ss_pred CCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecC-CCCCeEEEEEcCCCccccccccc
Q 000270 386 SSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG-HENDVNYVQFSGCAVASRFSLAD 464 (1749)
Q Consensus 386 ~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~g-H~~~V~sVafSpdg~as~~s~~~ 464 (1749)
.+|.+.|..++|+.+|-+||+++.|+.|++||+++.. ...++.- ....|.++.|...|
T Consensus 386 ---pght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~---------n~kt~~l~~~~~v~s~~fD~SG--------- 444 (506)
T KOG0289|consen 386 ---PGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK---------NFKTIQLDEKKEVNSLSFDQSG--------- 444 (506)
T ss_pred ---CCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc---------ccceeeccccccceeEEEcCCC---------
Confidence 5699999999999999999999999999999998633 1222221 22378999999877
Q ss_pred CCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCee
Q 000270 465 SSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVN 544 (1749)
Q Consensus 465 ~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~Vt 544 (1749)
.+|+.++.|=.|++++-.+ ..|. .+..+..|.+..+
T Consensus 445 -----------------t~L~~~g~~l~Vy~~~k~~-------k~W~--------------------~~~~~~~~sg~st 480 (506)
T KOG0289|consen 445 -----------------TYLGIAGSDLQVYICKKKT-------KSWT--------------------EIKELADHSGLST 480 (506)
T ss_pred -----------------CeEEeecceeEEEEEeccc-------ccce--------------------eeehhhhcccccc
Confidence 7899988777777765433 1232 2334445667789
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEC
Q 000270 545 MIVWSLDNRFVLAAIMDCRICVWNA 569 (1749)
Q Consensus 545 sVafSPDG~~LATGs~DGtI~VWDl 569 (1749)
++.|....+++++++.|..++|+.+
T Consensus 481 ~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 481 GVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeeecccceEEeeccchhheEEeec
Confidence 9999999999999999999888754
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=209.91 Aligned_cols=315 Identities=20% Similarity=0.286 Sum_probs=238.1
Q ss_pred EEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEecc
Q 000270 258 VITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP 337 (1749)
Q Consensus 258 LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSP 337 (1749)
|++.-.+++++ .++++.|.||...|+.++.......+.+++.|.+.+||.+++|.|+..+.||.+.|++|+|++
T Consensus 127 ivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~ 200 (481)
T KOG0300|consen 127 IVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHN 200 (481)
T ss_pred heeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEecc
Confidence 45555566643 356778899999999999988778999999999999999999999999999999999999999
Q ss_pred CCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCC---------C----------cccCC-CCCCCCCCCCCCCceEE
Q 000270 338 RPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS---------D----------AVAGR-NMAPSSSAGPQSHQIFC 397 (1749)
Q Consensus 338 dg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~---------~----------~~~g~-~~~~~~s~~~h~~~Vt~ 397 (1749)
.+. ++++++.|++..||...-.-.++.-..+... + ...+. -..+...+.+|...|.|
T Consensus 201 s~~---L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 201 SGL---LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred ccc---eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 876 8999999999999974322111110000000 0 00011 11223345678889999
Q ss_pred EEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCccccc
Q 000270 398 CAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNS 477 (1749)
Q Consensus 398 LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s 477 (1749)
+.|...|+.+++++.|.+..+||+.+ +..+..+.||....+.++-+|..
T Consensus 278 ~dWL~gg~Q~vTaSWDRTAnlwDVEt---------ge~v~~LtGHd~ELtHcstHptQ---------------------- 326 (481)
T KOG0300|consen 278 CDWLAGGQQMVTASWDRTANLWDVET---------GEVVNILTGHDSELTHCSTHPTQ---------------------- 326 (481)
T ss_pred hhhhcCcceeeeeeccccceeeeecc---------CceeccccCcchhccccccCCcc----------------------
Confidence 99999999999999999999999977 44677899999999999888875
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEE
Q 000270 478 WFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 557 (1749)
Q Consensus 478 ~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LAT 557 (1749)
.++++.+.|.+.++||++.. ...+..+.+|...|+++.|..|. .+++
T Consensus 327 ----rLVvTsSrDtTFRLWDFRea----------------------------I~sV~VFQGHtdtVTS~vF~~dd-~vVS 373 (481)
T KOG0300|consen 327 ----RLVVTSSRDTTFRLWDFREA----------------------------IQSVAVFQGHTDTVTSVVFNTDD-RVVS 373 (481)
T ss_pred ----eEEEEeccCceeEeccchhh----------------------------cceeeeecccccceeEEEEecCC-ceee
Confidence 78899999999999998831 23455678999999999998775 5789
Q ss_pred EeCCCeEEEEECCCCc-eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-----ee-------
Q 000270 558 AIMDCRICVWNAADGS-LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE-----IS------- 624 (1749)
Q Consensus 558 Gs~DGtI~VWDl~tgk-lv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~-----~~------- 624 (1749)
|+.|.+|+|||+.+.. ++.++.. ..+++.++.+. +..+++.--....|++||+. |..+..+. +|
T Consensus 374 gSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~-g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~ 450 (481)
T KOG0300|consen 374 GSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSK-GHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCC 450 (481)
T ss_pred cCCCceEEEeeeccccCcceeeec-CCccceeEeec-CCceEEeccCCceEEEEecC-CCccccCCcccccccceeeeee
Confidence 9999999999998764 5666654 45688999988 76788777777889999994 44443332 11
Q ss_pred -ecc--CCCEEEEEcCCCeEEEEECCC
Q 000270 625 -RFR--DGASIILSDDVGQLYILNTGQ 648 (1749)
Q Consensus 625 -~~s--DG~~LAsgd~DG~I~IWdl~t 648 (1749)
+.. --.-|++++-|..+.=|.+..
T Consensus 451 AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 451 AWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred eccccCcccccccccccceeeeeEecc
Confidence 111 123456677777887787643
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.4e-21 Score=222.27 Aligned_cols=245 Identities=19% Similarity=0.302 Sum_probs=201.7
Q ss_pred CCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECC------
Q 000270 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP------ 315 (1749)
Q Consensus 242 H~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~------ 315 (1749)
-.+.|.|++-+|+|.+|+.|+..|.|++|.+.+|.++..+.+|-..|+||.|+.||.+|+|||.||.|.+|.+.
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred ---CCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000270 316 ---DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1749)
Q Consensus 316 ---tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~ 392 (1749)
+-+++..+..|+-+|+.+...+.+... +|++++.|.+|++||+..+..+..+.. .
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~-rl~TaS~D~t~k~wdlS~g~LLlti~f---------------------p 217 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNA-RLYTASEDRTIKLWDLSLGVLLLTITF---------------------P 217 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccc-eEEEecCCceEEEEEeccceeeEEEec---------------------C
Confidence 236788999999999999998876433 899999999999999999988877754 3
Q ss_pred CceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCC
Q 000270 393 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472 (1749)
Q Consensus 393 ~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~ 472 (1749)
..+.+++.+|.+..+.+|+.+|.|.+.++.+. .+....|..=.++..
T Consensus 218 ~si~av~lDpae~~~yiGt~~G~I~~~~~~~~---------------~~~~~~v~~k~~~~~------------------ 264 (476)
T KOG0646|consen 218 SSIKAVALDPAERVVYIGTEEGKIFQNLLFKL---------------SGQSAGVNQKGRHEE------------------ 264 (476)
T ss_pred CcceeEEEcccccEEEecCCcceEEeeehhcC---------------Ccccccccccccccc------------------
Confidence 35899999999999999999999999887431 111111110001110
Q ss_pred cccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCC--CeeEEEEcC
Q 000270 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR--GVNMIVWSL 550 (1749)
Q Consensus 473 ~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~--~VtsVafSP 550 (1749)
+..+..+.+|.+ .|+|++++-
T Consensus 265 ---------------------------------------------------------~t~~~~~~Gh~~~~~ITcLais~ 287 (476)
T KOG0646|consen 265 ---------------------------------------------------------NTQINVLVGHENESAITCLAIST 287 (476)
T ss_pred ---------------------------------------------------------cceeeeeccccCCcceeEEEEec
Confidence 112223445555 799999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEE
Q 000270 551 DNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIA 598 (1749)
Q Consensus 551 DG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlL 598 (1749)
||.+|++|+.||.|+|||+.+.++++++....++|+.+.+.|.-...+
T Consensus 288 DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~ 335 (476)
T KOG0646|consen 288 DGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGII 335 (476)
T ss_pred CccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccccee
Confidence 999999999999999999999999999987889999999977543333
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.4e-19 Score=208.13 Aligned_cols=345 Identities=14% Similarity=0.200 Sum_probs=252.2
Q ss_pred CccccccceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEE---EccC-CCCeEEEEEcCCCcEEEE
Q 000270 227 STMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS---CRGH-EGDITDLAVSSNNALVAS 302 (1749)
Q Consensus 227 ~~~~~~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~t---L~gH-s~~VtsLafSPDg~lLAS 302 (1749)
.|.-++.......+.-...|..+.|+|.+.-|+....-|.+..|+..++.+.++ |..+ ..-|.|++|.++|. +++
T Consensus 184 VWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viT 262 (626)
T KOG2106|consen 184 VWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VIT 262 (626)
T ss_pred hhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEe
Confidence 355555566666666778899999999776555445568999999998877654 3333 36799999999986 579
Q ss_pred EeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcc-----
Q 000270 303 ASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAV----- 377 (1749)
Q Consensus 303 GS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~----- 377 (1749)
|..+|.|.||+..+.+..+....|.+.|.+++...+| .|++|+.|..|..|| ..-+.+..+.+|.....+
T Consensus 263 gDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~G----tllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e 337 (626)
T KOG2106|consen 263 GDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDG----TLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAE 337 (626)
T ss_pred ecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCc----cEeecCccceEEecc-ccccccccccCchhcCCeeEEec
Confidence 9999999999998777777666999999999999998 588899999999999 333333333333322111
Q ss_pred ------cCCCC----------CCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecC
Q 000270 378 ------AGRNM----------APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG 441 (1749)
Q Consensus 378 ------~g~~~----------~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~g 441 (1749)
.|... .......+|....+.++.+|+...|++++.|+.+++|+-. + +.--..
T Consensus 338 ~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~-----------k-~~wt~~ 405 (626)
T KOG2106|consen 338 GKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDH-----------K-LEWTKI 405 (626)
T ss_pred CCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCC-----------c-eeEEEE
Confidence 01000 0112234677889999999999999999999999999931 1 112233
Q ss_pred CCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCC
Q 000270 442 HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPP 521 (1749)
Q Consensus 442 H~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~ 521 (1749)
-..++.|+.|+|.+ .++.|...|...+.|..+...
T Consensus 406 ~~d~~~~~~fhpsg---------------------------~va~Gt~~G~w~V~d~e~~~l------------------ 440 (626)
T KOG2106|consen 406 IEDPAECADFHPSG---------------------------VVAVGTATGRWFVLDTETQDL------------------ 440 (626)
T ss_pred ecCceeEeeccCcc---------------------------eEEEeeccceEEEEeccccee------------------
Confidence 45678899999975 899999999999999886321
Q ss_pred CCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eEEEe-cCCCCCeEEEEEcCCCCcEEE
Q 000270 522 PMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGS-LVHSL-TGHTESTYVLDVHPFNPRIAM 599 (1749)
Q Consensus 522 ~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgk-lv~tL-~gH~~~VtsLafSPdd~rlLa 599 (1749)
..+.....+++++.|+|+|.+||.|+.|+.|+||-+.... ..... ..|..+|+.|.|++ ++++|.
T Consensus 441 ------------v~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~-Ds~~~~ 507 (626)
T KOG2106|consen 441 ------------VTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSS-DSQFLV 507 (626)
T ss_pred ------------EEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecC-CCceEE
Confidence 1111125679999999999999999999999999986543 33322 23448999999999 889999
Q ss_pred EEeCCCcEEEEeCCCCceEEEE---e-------ee----------------eccCCCEEEEEcCCCeEEEEECC
Q 000270 600 SAGYDGKTIVWDIWEGIPIRIY---E-------IS----------------RFRDGASIILSDDVGQLYILNTG 647 (1749)
Q Consensus 600 Sgs~DGtIrVWDl~tGk~l~tl---~-------~~----------------~~sDG~~LAsgd~DG~I~IWdl~ 647 (1749)
+-+.|-.|..|....-+.+... + .+ ...+..+||+|++.|.|+||..-
T Consensus 508 ~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yP 581 (626)
T KOG2106|consen 508 SNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYP 581 (626)
T ss_pred eccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccc
Confidence 9999999999954332222111 1 11 01177899999999999999864
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.7e-20 Score=218.40 Aligned_cols=286 Identities=16% Similarity=0.249 Sum_probs=220.5
Q ss_pred eEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCc--EEEEEeCCCeEEEE
Q 000270 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA--LVASASNDCIIRVW 312 (1749)
Q Consensus 235 ~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~--lLASGS~DGtIrVW 312 (1749)
+...++||++.|.||..+|.|.+||+|+.||+|+||.+.||+|++++. ..+.|.||+|+|.+. +||++-.. .+.|-
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~-~~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE-CVLIV 469 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecC-ceEEe
Confidence 445679999999999999999999999999999999999999999987 467899999999654 44444332 23333
Q ss_pred ECCCC-------------------------------------ceEEEecCCCCceEEEEeccCCCcceEEEeecCC---C
Q 000270 313 RLPDG-------------------------------------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD---G 352 (1749)
Q Consensus 313 Dl~tg-------------------------------------k~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~D---G 352 (1749)
+..-| .-++..-.|...|..|.|+..|. +|++...+ .
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD---YlatV~~~~~~~ 546 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD---YLATVMPDSGNK 546 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCc---eEEEeccCCCcc
Confidence 32111 11233335888999999999998 78776554 4
Q ss_pred cEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCC
Q 000270 353 TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQP 432 (1749)
Q Consensus 353 tIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~ 432 (1749)
.|.|+++........+ ....+.|.++.|+|...+|++++ ...|+|||+..
T Consensus 547 ~VliHQLSK~~sQ~PF--------------------~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~k--------- 596 (733)
T KOG0650|consen 547 SVLIHQLSKRKSQSPF--------------------RKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSK--------- 596 (733)
T ss_pred eEEEEecccccccCch--------------------hhcCCceeEEEecCCCceEEEEe-ccceEEEehhH---------
Confidence 6888888655432221 23456799999999988888776 57899999954
Q ss_pred CcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCcccccccc
Q 000270 433 NHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQ 512 (1749)
Q Consensus 433 ~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~ 512 (1749)
...+..+......|..++.+|.| +.|+.|+.|+.+..+|+.-
T Consensus 597 qelvKkL~tg~kwiS~msihp~G--------------------------Dnli~gs~d~k~~WfDldl------------ 638 (733)
T KOG0650|consen 597 QELVKKLLTGSKWISSMSIHPNG--------------------------DNLILGSYDKKMCWFDLDL------------ 638 (733)
T ss_pred HHHHHHHhcCCeeeeeeeecCCC--------------------------CeEEEecCCCeeEEEEccc------------
Confidence 23344555666788899999987 8999999999999999873
Q ss_pred ccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECC-------CC--ceEEEecCCCC
Q 000270 513 AYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAA-------DG--SLVHSLTGHTE 583 (1749)
Q Consensus 513 ~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~-------tg--klv~tL~gH~~ 583 (1749)
...+.+++.-|...++.|+|++.-.++++|+.||++.||--. +. -++..|.||..
T Consensus 639 ----------------sskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~ 702 (733)
T KOG0650|consen 639 ----------------SSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEK 702 (733)
T ss_pred ----------------CcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCcee
Confidence 124556777789999999999999999999999999998531 11 24567889966
Q ss_pred C----eEEEEEcCCCCcEEEEEeCCCcEEEE
Q 000270 584 S----TYVLDVHPFNPRIAMSAGYDGKTIVW 610 (1749)
Q Consensus 584 ~----VtsLafSPdd~rlLaSgs~DGtIrVW 610 (1749)
. |..+.||| ..-+|+|+|.||+|++|
T Consensus 703 ~~~~gVLd~~wHP-~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 703 TNDLGVLDTIWHP-RQPWLFSAGADGTIRLF 732 (733)
T ss_pred ecccceEeecccC-CCceEEecCCCceEEee
Confidence 4 89999999 55577799999999998
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.5e-20 Score=215.02 Aligned_cols=248 Identities=18% Similarity=0.286 Sum_probs=206.4
Q ss_pred EEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEE----E-------------e-cCCCCceEEEEeccCC
Q 000270 278 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS----V-------------L-RGHTAAVTAIAFSPRP 339 (1749)
Q Consensus 278 l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~----t-------------L-~gHs~~VtsIaFSPdg 339 (1749)
+..+..|.-.|++|+++|+++++++++.+|+|.-|++.+|+... . - .+|...|.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 34456799999999999999999999999999999998876330 1 1 2688899999999999
Q ss_pred CcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEE
Q 000270 340 GSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVW 419 (1749)
Q Consensus 340 ~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIW 419 (1749)
+ +||+|+.|..|.||+.++.+.+..+ .+|.+.|.+++|-.....|++++.|..|++|
T Consensus 215 k---ylatgg~d~~v~Iw~~~t~ehv~~~--------------------~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw 271 (479)
T KOG0299|consen 215 K---YLATGGRDRHVQIWDCDTLEHVKVF--------------------KGHRGAVSSLAFRKGTSELYSASADRSVKVW 271 (479)
T ss_pred c---EEEecCCCceEEEecCcccchhhcc--------------------cccccceeeeeeecCccceeeeecCCceEEE
Confidence 8 9999999999999999988766554 5688999999999888899999999999999
Q ss_pred eCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecC
Q 000270 420 NACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPR 499 (1749)
Q Consensus 420 Dl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~ 499 (1749)
++.. ...+.++.+|.+.|..|...... ..+-+|+.|+++++|++.
T Consensus 272 ~~~~---------~s~vetlyGHqd~v~~IdaL~re--------------------------R~vtVGgrDrT~rlwKi~ 316 (479)
T KOG0299|consen 272 SIDQ---------LSYVETLYGHQDGVLGIDALSRE--------------------------RCVTVGGRDRTVRLWKIP 316 (479)
T ss_pred ehhH---------hHHHHHHhCCccceeeechhccc--------------------------ceEEeccccceeEEEecc
Confidence 9954 45677899999999998776543 455556699999999985
Q ss_pred CCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEec
Q 000270 500 SRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT 579 (1749)
Q Consensus 500 s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~ 579 (1749)
.. ....+.++...+-|++|-. ...+++|+.+|.|.+|++...+++.+..
T Consensus 317 ee------------------------------sqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 317 EE------------------------------SQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSR 365 (479)
T ss_pred cc------------------------------ceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEee
Confidence 31 1223456677899999864 4688999999999999999998887653
Q ss_pred -CC-----------CCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCC
Q 000270 580 -GH-----------TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG 615 (1749)
Q Consensus 580 -gH-----------~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tG 615 (1749)
+| ...|++|+..| +..++++|+.+|.|++|-+.+|
T Consensus 366 ~AHgv~~~~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 366 LAHGVIPELDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ccccccCCccccccccceeeeEecc-cCceEEecCCCCceEEEEecCC
Confidence 22 23799999999 8899999999999999999988
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.4e-20 Score=213.19 Aligned_cols=282 Identities=15% Similarity=0.282 Sum_probs=229.2
Q ss_pred EccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCC---eEEEEEc--cCCCCeEEEEEcCCCcEEEEEeCCCeEEEEE
Q 000270 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA---YCLASCR--GHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1749)
Q Consensus 239 L~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg---~~l~tL~--gHs~~VtsLafSPDg~lLASGS~DGtIrVWD 313 (1749)
...|..-|.++++|...+.+.||+. |.|+|||+... ..+..|. ....-|.++.++|||+.|++|+.-.++.|||
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD 493 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence 3469999999999999999999976 78999999643 2233332 2467799999999999999999999999999
Q ss_pred CCCCceE--EEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCC
Q 000270 314 LPDGLPI--SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQ 391 (1749)
Q Consensus 314 l~tgk~l--~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h 391 (1749)
+....+. ..+....-.+.+++.+||.+ +.++++.||.|.|||+.+...+..+ .+|
T Consensus 494 LAapTprikaeltssapaCyALa~spDak---vcFsccsdGnI~vwDLhnq~~Vrqf--------------------qGh 550 (705)
T KOG0639|consen 494 LAAPTPRIKAELTSSAPACYALAISPDAK---VCFSCCSDGNIAVWDLHNQTLVRQF--------------------QGH 550 (705)
T ss_pred ccCCCcchhhhcCCcchhhhhhhcCCccc---eeeeeccCCcEEEEEcccceeeecc--------------------cCC
Confidence 9765432 33444445678899999987 8899999999999999877655544 678
Q ss_pred CCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCC
Q 000270 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDST 471 (1749)
Q Consensus 392 ~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~ 471 (1749)
...+.||.+++||..|.+|+-|.+||.||++.+.. +. -......|.++.++|.+
T Consensus 551 tDGascIdis~dGtklWTGGlDntvRcWDlregrq---------lq-qhdF~SQIfSLg~cP~~---------------- 604 (705)
T KOG0639|consen 551 TDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ---------LQ-QHDFSSQIFSLGYCPTG---------------- 604 (705)
T ss_pred CCCceeEEecCCCceeecCCCccceeehhhhhhhh---------hh-hhhhhhhheecccCCCc----------------
Confidence 99999999999999999999999999999976431 11 12235688999999987
Q ss_pred CcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCC
Q 000270 472 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD 551 (1749)
Q Consensus 472 ~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPD 551 (1749)
++|+.|-..+.+.|..... .....+..|..-|.++.|++.
T Consensus 605 ----------dWlavGMens~vevlh~sk------------------------------p~kyqlhlheScVLSlKFa~c 644 (705)
T KOG0639|consen 605 ----------DWLAVGMENSNVEVLHTSK------------------------------PEKYQLHLHESCVLSLKFAYC 644 (705)
T ss_pred ----------cceeeecccCcEEEEecCC------------------------------ccceeecccccEEEEEEeccc
Confidence 8999999999888875542 222344557788999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 000270 552 NRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1749)
Q Consensus 552 G~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl 612 (1749)
|+++++.+.|..+..|.+.-|..+..... ...|.++.++- +.++|+||+.|....||.+
T Consensus 645 GkwfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~-ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 645 GKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISF-DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred CceeeecCchhhhhhccCccccceeeccc-cCcceeeeecc-CceEEEecCCCcceEEEEE
Confidence 99999999999999999998988876653 55799999988 7789999999999888875
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-20 Score=227.13 Aligned_cols=290 Identities=19% Similarity=0.323 Sum_probs=224.6
Q ss_pred EEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCC----eEEEEEccC---CCCeEEEEEcC-CCcEEEEEeCCCeE
Q 000270 238 RVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA----YCLASCRGH---EGDITDLAVSS-NNALVASASNDCII 309 (1749)
Q Consensus 238 tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg----~~l~tL~gH---s~~VtsLafSP-Dg~lLASGS~DGtI 309 (1749)
.+++|.. +|+..++-..|+.++. ..++|+.+... .+...+.+. ...+.++.|.. +.++||+++..|.|
T Consensus 37 ~~k~~~n---AIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i 112 (839)
T KOG0269|consen 37 KLKAKAN---AISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVI 112 (839)
T ss_pred ecccccc---eEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcE
Confidence 3555544 5556788888888775 47888877532 222222221 12345677775 67899999999999
Q ss_pred EEEECCC---CceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCC
Q 000270 310 RVWRLPD---GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1749)
Q Consensus 310 rVWDl~t---gk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~ 386 (1749)
.+||+.. .+.+..+..|...|+++.|++... ++|++|+.||+|++||++......++
T Consensus 113 ~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep--~iliSGSQDg~vK~~DlR~~~S~~t~------------------ 172 (839)
T KOG0269|consen 113 SVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEP--NILISGSQDGTVKCWDLRSKKSKSTF------------------ 172 (839)
T ss_pred EEEecCccccchhhhHhhhhccceeeeeeccCCc--cEEEecCCCceEEEEeeecccccccc------------------
Confidence 9999976 566778889999999999999754 58999999999999999977655443
Q ss_pred CCCCCCCceEEEEEcC-CCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccC
Q 000270 387 SAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 465 (1749)
Q Consensus 387 s~~~h~~~Vt~LafSP-DG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~ 465 (1749)
.+....|..+.|+| .+..|+++...|.|.+||++. +......+.+|.++|.|+.|+|+.
T Consensus 173 --~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRq--------p~r~~~k~~AH~GpV~c~nwhPnr---------- 232 (839)
T KOG0269|consen 173 --RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQ--------PDRCEKKLTAHNGPVLCLNWHPNR---------- 232 (839)
T ss_pred --cccchhhhceeeccCCCceEEEecCCceEEEeeccC--------chhHHHHhhcccCceEEEeecCCC----------
Confidence 23566799999999 578999999999999999974 466778899999999999999976
Q ss_pred CCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeE
Q 000270 466 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNM 545 (1749)
Q Consensus 466 ~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~Vts 545 (1749)
.+|||||.|+.|+||++.+.+.... .......+|.+
T Consensus 233 ----------------~~lATGGRDK~vkiWd~t~~~~~~~----------------------------~tInTiapv~r 268 (839)
T KOG0269|consen 233 ----------------EWLATGGRDKMVKIWDMTDSRAKPK----------------------------HTINTIAPVGR 268 (839)
T ss_pred ----------------ceeeecCCCccEEEEeccCCCccce----------------------------eEEeecceeee
Confidence 7999999999999999986442111 11234467999
Q ss_pred EEEcCCCCE-EEEEe--CCCeEEEEECCCCc-eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCC
Q 000270 546 IVWSLDNRF-VLAAI--MDCRICVWNAADGS-LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG 615 (1749)
Q Consensus 546 VafSPDG~~-LATGs--~DGtI~VWDl~tgk-lv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tG 615 (1749)
|.|-|..++ ||+++ .|..|+|||+...- +.+++..|+..++.++|...+..++.+++.||+|..-.+.++
T Consensus 269 VkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 269 VKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 999998765 55554 57889999997654 567899999999999997767788899999998876555443
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-18 Score=203.46 Aligned_cols=270 Identities=11% Similarity=0.156 Sum_probs=195.6
Q ss_pred ccccceEEEEccCCCCEEEEEECCCCCEE-EEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEE-eCCC
Q 000270 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYV-ITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASA-SNDC 307 (1749)
Q Consensus 230 ~~~~~~i~tL~GH~~~Vt~VaFSPDG~~L-ATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASG-S~DG 307 (1749)
..+.+.++.+.+|.. +.+++|+|+|+.| ++++.++.|++||+.+++.+..+..+.. +..++|+|+++.|+++ +.++
T Consensus 18 ~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~ 95 (300)
T TIGR03866 18 TATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDN 95 (300)
T ss_pred CCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCC
Confidence 345667778877654 6789999999976 5677899999999999988887765544 5788999999877554 5689
Q ss_pred eEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCC-cEEEEEcCCCcccceeecCCCCCcccCCCCCCCC
Q 000270 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG-TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1749)
Q Consensus 308 tIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DG-tIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~ 386 (1749)
.|++||+.+++.+..+.. ...+.+++|+|++. ++++++.++ .+.+||..++.....+.
T Consensus 96 ~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~---~l~~~~~~~~~~~~~d~~~~~~~~~~~----------------- 154 (300)
T TIGR03866 96 LVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGK---IVVNTSETTNMAHFIDTKTYEIVDNVL----------------- 154 (300)
T ss_pred eEEEEECCCCeEEeEeeC-CCCcceEEECCCCC---EEEEEecCCCeEEEEeCCCCeEEEEEE-----------------
Confidence 999999999888777753 34578899999987 777777665 56778987765443321
Q ss_pred CCCCCCCceEEEEEcCCCCEEEEe-cCCCcEEEEeCCCCCCCCCCCCCcceeeecCC-------CCCeEEEEEcCCCccc
Q 000270 387 SAGPQSHQIFCCAFNANGTVFVTG-SSDTLARVWNACKPNTDDSDQPNHEIDVLSGH-------ENDVNYVQFSGCAVAS 458 (1749)
Q Consensus 387 s~~~h~~~Vt~LafSPDG~~LaSG-s~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH-------~~~V~sVafSpdg~as 458 (1749)
....+.+++|+++|.+|+++ ..++.|++||+.++.. +..+..+ ......++|++++
T Consensus 155 ----~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~i~~s~dg--- 218 (300)
T TIGR03866 155 ----VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV---------IKKITFEIPGVHPEAVQPVGIKLTKDG--- 218 (300)
T ss_pred ----cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee---------eeeeeecccccccccCCccceEECCCC---
Confidence 11235679999999988654 4689999999976432 1211111 1123457788876
Q ss_pred ccccccCCCCCCCCcccccccCCCE-EEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCccccc
Q 000270 459 RFSLADSSKEDSTPKFKNSWFCHDN-IVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL 537 (1749)
Q Consensus 459 ~~s~~~~~~~~~~~~~~~s~~~~~~-LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~ 537 (1749)
+. +++.+.++.+.+||+.+++.. .. .
T Consensus 219 -----------------------~~~~~~~~~~~~i~v~d~~~~~~~-----------------------------~~-~ 245 (300)
T TIGR03866 219 -----------------------KTAFVALGPANRVAVVDAKTYEVL-----------------------------DY-L 245 (300)
T ss_pred -----------------------CEEEEEcCCCCeEEEEECCCCcEE-----------------------------EE-E
Confidence 44 444566778999998764311 00 1
Q ss_pred CCCCCeeEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEecCCCCCeEEEEEcC
Q 000270 538 PTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAADGSLVHSLTGHTESTYVLDVHP 592 (1749)
Q Consensus 538 ~h~~~VtsVafSPDG~~LATGs-~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSP 592 (1749)
.+...+.+++|+|+|++|+++. .++.|.|||+.+++++..+... ...+.|+|+|
T Consensus 246 ~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 246 LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 1233578999999999998874 6899999999999999998765 4458888875
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-18 Score=208.03 Aligned_cols=419 Identities=12% Similarity=0.130 Sum_probs=274.2
Q ss_pred ccccCCCccccccceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEE--EccCCCCeEEEEEcCCCc
Q 000270 221 YAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS--CRGHEGDITDLAVSSNNA 298 (1749)
Q Consensus 221 ~~~a~p~~~~~~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~t--L~gHs~~VtsLafSPDg~ 298 (1749)
.......|.+.+++....+..-.++|++++.+|.+..++.|++||.+.+++...+..... |.-..+.|.+|+|++++.
T Consensus 88 ~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~ 167 (691)
T KOG2048|consen 88 LSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT 167 (691)
T ss_pred CCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCcc
Confidence 344556788899999999999999999999999999999999999888888888776543 445679999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEec--------CCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeec
Q 000270 299 LVASASNDCIIRVWRLPDGLPISVLR--------GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYI 370 (1749)
Q Consensus 299 lLASGS~DGtIrVWDl~tgk~l~tL~--------gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~ 370 (1749)
.||+|+.||.|++||+.++..+.... +...-|+++.|..++ .|++|..-|+|.+||...+.++..+
T Consensus 168 ~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~----tI~sgDS~G~V~FWd~~~gTLiqS~-- 241 (691)
T KOG2048|consen 168 KIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS----TIASGDSAGTVTFWDSIFGTLIQSH-- 241 (691)
T ss_pred EEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC----cEEEecCCceEEEEcccCcchhhhh--
Confidence 99999999999999999987766221 134468899999776 7999999999999999988876655
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEE
Q 000270 371 PRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQ 450 (1749)
Q Consensus 371 ~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVa 450 (1749)
..|...|.|++..+++..+++++.|+.|..|...+... ..........|...|.+++
T Consensus 242 ------------------~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~-----~wv~~~~r~~h~hdvrs~a 298 (691)
T KOG2048|consen 242 ------------------SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS-----EWVINSRRDLHAHDVRSMA 298 (691)
T ss_pred ------------------hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc-----ceeeeccccCCcccceeee
Confidence 34778899999999999999999999999988765321 1223344567888999998
Q ss_pred EcCCCcccccc---cccCCCCCCC---CcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCC
Q 000270 451 FSGCAVASRFS---LADSSKEDST---PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMP 524 (1749)
Q Consensus 451 fSpdg~as~~s---~~~~~~~~~~---~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~ 524 (1749)
..++...+... +......... ...+........+.++..+..+.+|...... .|.... ....
T Consensus 299 v~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~------lwrlGS------~~~~ 366 (691)
T KOG2048|consen 299 VIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVD------LWRLGS------VILQ 366 (691)
T ss_pred eecceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEecccccc------ceeccC------cccc
Confidence 87653211110 0000000000 0001111111222222233333333222110 010000 0000
Q ss_pred CCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEe-----cCCCCCeEEEEEcCCCCcEEE
Q 000270 525 PQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL-----TGHTESTYVLDVHPFNPRIAM 599 (1749)
Q Consensus 525 ~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL-----~gH~~~VtsLafSPdd~rlLa 599 (1749)
.........+-.......|.+.+.||+|++|+.+.- ..++||-+..-..+... ....-.+..+.|+-++..+++
T Consensus 367 g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~ 445 (691)
T KOG2048|consen 367 GEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFL 445 (691)
T ss_pred cccChhhheeeecCCccceeeeccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEE
Confidence 000111122233445567999999999999998764 45777777542222211 122335678888886666665
Q ss_pred EEeCCCcEEEEeCCCCceEEEEe------------eeeccCCCEEEEEcCCCeEEEEECCCCcccc------cccceeee
Q 000270 600 SAGYDGKTIVWDIWEGIPIRIYE------------ISRFRDGASIILSDDVGQLYILNTGQGESQK------DAKYDQFF 661 (1749)
Q Consensus 600 Sgs~DGtIrVWDl~tGk~l~tl~------------~~~~sDG~~LAsgd~DG~I~IWdl~tGe~~k------~~~~~~fF 661 (1749)
..-.+..+.+.++.+........ ....+||++||+.+..|.|++|++.+++... .......|
T Consensus 446 ~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~ 525 (691)
T KOG2048|consen 446 VSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAF 525 (691)
T ss_pred EecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeec
Confidence 55477888888877654322211 1234599999999999999999998876432 12234566
Q ss_pred c-CCCcceeE-cCCCcEEeccc
Q 000270 662 L-GDYRPLVQ-DTYGNVLDQET 681 (1749)
Q Consensus 662 s-~D~r~Lv~-d~~G~Vld~~t 681 (1749)
+ .++..|+. ++++.|.....
T Consensus 526 ~~~~~~~lvvats~nQv~efdi 547 (691)
T KOG2048|consen 526 SPFVRNRLVVATSNNQVFEFDI 547 (691)
T ss_pred cccccCcEEEEecCCeEEEEec
Confidence 6 45556644 55566654333
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-19 Score=199.79 Aligned_cols=296 Identities=20% Similarity=0.303 Sum_probs=213.5
Q ss_pred ccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECC----CCeEEEEEccCCCCeEEEEEcC--CCcEEEEEeCCCeEEEEE
Q 000270 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME----TAYCLASCRGHEGDITDLAVSS--NNALVASASNDCIIRVWR 313 (1749)
Q Consensus 240 ~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~----Tg~~l~tL~gHs~~VtsLafSP--Dg~lLASGS~DGtIrVWD 313 (1749)
.+|.+-|.|+.|++.|+.+|||+.|++|+|||.. +..+....+.|.+.|..+.|.+ -|+.||+++.|++|.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4899999999999999999999999999999964 3456677889999999999976 699999999999999997
Q ss_pred CC---------CCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCC
Q 000270 314 LP---------DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 384 (1749)
Q Consensus 314 l~---------tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~ 384 (1749)
=. ......++....+.|+.|.|.|...+. .||+++.||+|+||+.-...-+....+...... .
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGL-klA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~-------~ 161 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGL-KLAAASADGILRIYEAPDPMNLSQWTLQHEIQN-------V 161 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcce-EEEEeccCcEEEEEecCCccccccchhhhhhhh-------c
Confidence 41 112345667778899999999986543 899999999999998765433333222111100 0
Q ss_pred CCCCCCCCCceEEEEEcCC---CCEEEEecCC-----CcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCc
Q 000270 385 SSSAGPQSHQIFCCAFNAN---GTVFVTGSSD-----TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAV 456 (1749)
Q Consensus 385 ~~s~~~h~~~Vt~LafSPD---G~~LaSGs~D-----GtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~ 456 (1749)
......+.....|+.|+|. ..+||+|+.+ +.+.||..... ......+..+.+|..+|+.|+|.|...
T Consensus 162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~-----~rKw~kva~L~d~~dpI~di~wAPn~G 236 (361)
T KOG2445|consen 162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNEN-----GRKWLKVAELPDHTDPIRDISWAPNIG 236 (361)
T ss_pred cCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCC-----cceeeeehhcCCCCCcceeeeeccccC
Confidence 1122345566889999974 3578888866 47889987432 223455677889999999999999752
Q ss_pred ccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccc
Q 000270 457 ASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI 536 (1749)
Q Consensus 457 as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l 536 (1749)
.. -..|++++.|| |+||.+.......... .+. .+..........+..+
T Consensus 237 r~----------------------y~~lAvA~kDg-v~I~~v~~~~s~i~~e--------e~~-~~~~~~~l~v~~vs~~ 284 (361)
T KOG2445|consen 237 RS----------------------YHLLAVATKDG-VRIFKVKVARSAIEEE--------EVL-APDLMTDLPVEKVSEL 284 (361)
T ss_pred Cc----------------------eeeEEEeecCc-EEEEEEeeccchhhhh--------ccc-CCCCccccceEEeeec
Confidence 11 15899999999 9999987522110000 000 0001111223345567
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECC---CCceEEEecC
Q 000270 537 LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAA---DGSLVHSLTG 580 (1749)
Q Consensus 537 ~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~---tgklv~tL~g 580 (1749)
..|.+.|..+.|.--|..|++.+.||.|++|-.. ..+|...+..
T Consensus 285 ~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~ 331 (361)
T KOG2445|consen 285 DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKA 331 (361)
T ss_pred cCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEec
Confidence 7899999999999999999999999999999763 2445555543
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.5e-21 Score=233.37 Aligned_cols=422 Identities=17% Similarity=0.215 Sum_probs=275.7
Q ss_pred eEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEE
Q 000270 276 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355 (1749)
Q Consensus 276 ~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIr 355 (1749)
+.++.|.||...|+|++|...|.+|++|+.|..|+||.+.++.+++.++||.+.|+.++.+.... ++++++.|..|+
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~---~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNT---MIAAASNDKVIR 257 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhh---hhhhcccCceEE
Confidence 34556779999999999999999999999999999999999999999999999999999998765 889999999999
Q ss_pred EEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcc
Q 000270 356 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHE 435 (1749)
Q Consensus 356 IWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~ 435 (1749)
+|.+.++..+..+ .+|.+.|++++|+|-. +.+.||++++||.+-....-...|..
T Consensus 258 vWrl~~~~pvsvL--------------------rghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~- 312 (1113)
T KOG0644|consen 258 VWRLPDGAPVSVL--------------------RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLK- 312 (1113)
T ss_pred EEecCCCchHHHH--------------------hccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCC-
Confidence 9999998877665 5799999999999964 67789999999985100000000000
Q ss_pred eeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccc
Q 000270 436 IDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYH 515 (1749)
Q Consensus 436 i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~ 515 (1749)
+ .....+.++.|...+ ..++|++.|+....|.+.
T Consensus 313 ---~-~~~~~~~s~~~~~~~--------------------------~~f~Tgs~d~ea~n~e~~---------------- 346 (1113)
T KOG0644|consen 313 ---F-TEKDLVDSILFENNG--------------------------DRFLTGSRDGEARNHEFE---------------- 346 (1113)
T ss_pred ---c-ccccceeeeeccccc--------------------------cccccccCCcccccchhh----------------
Confidence 0 011233334443333 455666666665555332
Q ss_pred cCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCC
Q 000270 516 LKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP 595 (1749)
Q Consensus 516 l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~ 595 (1749)
+++|...+-.+++.+. +-.
T Consensus 347 -----------------------------~l~~~~~~lif~t~ss--------------------------------d~~ 365 (1113)
T KOG0644|consen 347 -----------------------------QLAWRSNLLIFVTRSS--------------------------------DLS 365 (1113)
T ss_pred -----------------------------HhhhhccceEEEeccc--------------------------------ccc
Confidence 1222222222222222 112
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEEeee--------ecc-CCCEEEEEcCCCeEEEEECCCCccccccc------ceee
Q 000270 596 RIAMSAGYDGKTIVWDIWEGIPIRIYEIS--------RFR-DGASIILSDDVGQLYILNTGQGESQKDAK------YDQF 660 (1749)
Q Consensus 596 rlLaSgs~DGtIrVWDl~tGk~l~tl~~~--------~~s-DG~~LAsgd~DG~I~IWdl~tGe~~k~~~------~~~f 660 (1749)
.+.+++-.+..+++|++.+|.+++.+.++ .++ +.....+++.||.+.|||+..|...+.+. .+..
T Consensus 366 ~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~k 445 (1113)
T KOG0644|consen 366 SIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGK 445 (1113)
T ss_pred ccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccc
Confidence 44556777888999999999888776554 222 77777889999999999999998775443 2357
Q ss_pred ecCCCcce-eEcCCCcEEecccccCC----------CCCCCCCccccCCCCCCCCcchhhhhhhcccccccccCCCCCce
Q 000270 661 FLGDYRPL-VQDTYGNVLDQETQLAP----------HRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKL 729 (1749)
Q Consensus 661 Fs~D~r~L-v~d~~G~Vld~~tq~~P----------hl~~~~~ll~D~~g~P~p~~~Q~l~p~R~l~~~~~a~sPdg~~l 729 (1749)
|++||+.+ +.|.+|..+-..+.... .+.++.+++-|+.+.......|.. |.| .|
T Consensus 446 FSqdgts~~lsd~hgql~i~g~gqs~s~k~ak~dqffl~dyrplirdTn~~vldqeTq~~-ph~---------~~----- 510 (1113)
T KOG0644|consen 446 FSQDGTSIALSDDHGQLYILGTGQSKSQKKAKYDQFFLGDYRPLIRDTNGYVLDQETQLA-PHR---------NP----- 510 (1113)
T ss_pred cCCCCceEecCCCCCceEEeccCCCccccccccceEeecCcccccccccchhhhhHhhhc-ccc---------CC-----
Confidence 99999988 56788887654443222 122334444555443332222221 111 01
Q ss_pred eeccCccCCcCcccCCccCcccccCCCccccccc-ccccCcccC-CCCCCcccc-ccccccccccCCCCCCCCCCCCCcc
Q 000270 730 AVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVM-DWEPENEVQ-SDDNDSEYN-VAEEYSTEEKGSLSSTSSGDSECSA 806 (1749)
Q Consensus 730 Avg~~~~ld~~~~~~p~~~~~~~i~~~~~~~~~~-~w~pe~e~~-s~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 806 (1749)
|++ --+..|.|...+++.+-+.-.. .+. .--|..|.+ .++++.|.. ++|+++|+|+.+
T Consensus 511 ---p~~--l~ds~~iphpe~yqtl~q~rr~-sa~dh~mp~l~fia~~~~E~e~~Vls~~nds~~~~~------------- 571 (1113)
T KOG0644|consen 511 ---PDF--LCDSDMIPHPEPYQTLFQGRRL-SALDHLMPPLEFIATMDWEPEEQVLSDQNDSEYNRS------------- 571 (1113)
T ss_pred ---CCc--eeccCCCcCCchhhhccccccc-chhhhcCCcccchhhhccccchhhhhhcccccccCC-------------
Confidence 111 1244455665555444433222 122 344554433 355555444 555555554320
Q ss_pred CCCCCCCCCCCchhhhHhhhhhcccceeccccccccccccccccCCcccCCcccccccccccccccccCCccCCChhHHH
Q 000270 807 EDSEDGENPMDGLRRSKRKKQKAEVEIMTSSGRRVKRRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRAA 886 (1749)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 886 (1749)
-+...+..+-.+..++.++.|-..+..+.|...++..|++
T Consensus 572 ----------------------------------------~es~seldg~isq~krt~n~r~g~k~s~~~hg~s~ss~~~ 611 (1113)
T KOG0644|consen 572 ----------------------------------------PESLSELDGMISQLKRTQNQRMGAKQSKRKHGLSKSSRPP 611 (1113)
T ss_pred ----------------------------------------cccchhhhhhhhhhhhhhccccccchhhccCCCCccccCC
Confidence 1322342344456666677888888888888888999999
Q ss_pred HHHHhHHhhhhcCcCCCCCC
Q 000270 887 ARNARSFFSKITGASTDGED 906 (1749)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~~~ 906 (1749)
|++|||+.+.|+++++++-|
T Consensus 612 R~~~Rn~~~~isk~sg~~~~ 631 (1113)
T KOG0644|consen 612 RAAARNASSDISKISGISLD 631 (1113)
T ss_pred cccccccchhhccCCCcccc
Confidence 99999999999999998776
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.7e-19 Score=199.33 Aligned_cols=261 Identities=17% Similarity=0.294 Sum_probs=203.5
Q ss_pred CCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcc
Q 000270 285 EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF 364 (1749)
Q Consensus 285 s~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~ 364 (1749)
...|.+|.|+|.+..|++++.||++++|++........+. |..++.+++|.++. .+++|+.||.|+.+|+.++..
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~----~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADES----TIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCc----eEEEeccCceEEEEEecCCcc
Confidence 5789999999999999999999999999998876555555 99999999999965 689999999999999998763
Q ss_pred cceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCC
Q 000270 365 SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN 444 (1749)
Q Consensus 365 l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~ 444 (1749)
.. ...|...|.|+.+++....+++|+.|++|++||.+.... ...+ ....
T Consensus 88 ~~---------------------igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~---------~~~~-d~~k 136 (323)
T KOG1036|consen 88 DQ---------------------IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVV---------VGTF-DQGK 136 (323)
T ss_pred ee---------------------eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccc---------cccc-ccCc
Confidence 22 256888999999999888999999999999999974211 1111 2233
Q ss_pred CeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCC
Q 000270 445 DVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMP 524 (1749)
Q Consensus 445 ~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~ 524 (1749)
.|.++.... +.|+.|+.|..|.+||+++.....
T Consensus 137 kVy~~~v~g----------------------------~~LvVg~~~r~v~iyDLRn~~~~~------------------- 169 (323)
T KOG1036|consen 137 KVYCMDVSG----------------------------NRLVVGTSDRKVLIYDLRNLDEPF------------------- 169 (323)
T ss_pred eEEEEeccC----------------------------CEEEEeecCceEEEEEcccccchh-------------------
Confidence 677776653 689999999999999999633110
Q ss_pred CCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC----ceEEEecCCCC---------CeEEEEEc
Q 000270 525 PQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG----SLVHSLTGHTE---------STYVLDVH 591 (1749)
Q Consensus 525 ~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tg----klv~tL~gH~~---------~VtsLafS 591 (1749)
..+-..-...+.+|++-|++.-.|+++-||+|.+=.+... +....|..|.. +|++|+||
T Consensus 170 --------q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh 241 (323)
T KOG1036|consen 170 --------QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH 241 (323)
T ss_pred --------hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEec
Confidence 0011123346899999999999999999999988666554 34446666642 79999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCceEEEEeee-------ecc-CCCEEEEEcC
Q 000270 592 PFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS-------RFR-DGASIILSDD 637 (1749)
Q Consensus 592 Pdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~-------~~s-DG~~LAsgd~ 637 (1749)
|- -..|+|||.||.|.+||+.+.+.+..|..- .|+ ||..||+++.
T Consensus 242 p~-~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 242 PI-HGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cc-cceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 94 668899999999999999988877666421 222 8888888766
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-19 Score=199.66 Aligned_cols=251 Identities=19% Similarity=0.289 Sum_probs=190.4
Q ss_pred cCCCCeEEEEEcC-CCcEEEEEeCCCeEEEEECCC-CceE-EEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEc
Q 000270 283 GHEGDITDLAVSS-NNALVASASNDCIIRVWRLPD-GLPI-SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359 (1749)
Q Consensus 283 gHs~~VtsLafSP-Dg~lLASGS~DGtIrVWDl~t-gk~l-~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl 359 (1749)
.....|.+|+||| ...+|++||.||+||+|+++. |..+ .....|.++|.+++|+.+|. .+++|+.|+.+++||+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddgs---kVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGS---KVFSGGCDKQAKLWDL 101 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCc---eEEeeccCCceEEEEc
Confidence 3467899999999 566778999999999999976 4433 34457999999999999997 8999999999999999
Q ss_pred CCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCC--EEEEecCCCcEEEEeCCCCCCCCCCCCCccee
Q 000270 360 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT--VFVTGSSDTLARVWNACKPNTDDSDQPNHEID 437 (1749)
Q Consensus 360 ~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~--~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~ 437 (1749)
.+++... + ..|.++|.++.|-+... .|++|+.|.+|++||++... ++.
T Consensus 102 ~S~Q~~~-v--------------------~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~---------pv~ 151 (347)
T KOG0647|consen 102 ASGQVSQ-V--------------------AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN---------PVA 151 (347)
T ss_pred cCCCeee-e--------------------eecccceeEEEEecCCCcceeEecccccceeecccCCCC---------eee
Confidence 9986432 2 45889999999988665 89999999999999997532 222
Q ss_pred eecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccC
Q 000270 438 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLK 517 (1749)
Q Consensus 438 ~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~ 517 (1749)
++ .....|+++..- ..+++.+..+..|.+|++..+....+
T Consensus 152 t~-~LPeRvYa~Dv~----------------------------~pm~vVata~r~i~vynL~n~~te~k----------- 191 (347)
T KOG0647|consen 152 TL-QLPERVYAADVL----------------------------YPMAVVATAERHIAVYNLENPPTEFK----------- 191 (347)
T ss_pred ee-eccceeeehhcc----------------------------CceeEEEecCCcEEEEEcCCCcchhh-----------
Confidence 22 123344444332 25888999999999999975331110
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceEEEecCCCC---------CeE
Q 000270 518 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG--SLVHSLTGHTE---------STY 586 (1749)
Q Consensus 518 v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tg--klv~tL~gH~~---------~Vt 586 (1749)
....+..-.+.||+...|....|.|+..|++.|..+..+ +.-.+|+.|.. .|+
T Consensus 192 ----------------~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVN 255 (347)
T KOG0647|consen 192 ----------------RIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVN 255 (347)
T ss_pred ----------------hhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEec
Confidence 001112335889999999988899999999999999887 44446667752 477
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEee
Q 000270 587 VLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEI 623 (1749)
Q Consensus 587 sLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~ 623 (1749)
+|+|+| --..|+|+|.||++.+||-.....|.+.+.
T Consensus 256 si~FhP-~hgtlvTaGsDGtf~FWDkdar~kLk~s~~ 291 (347)
T KOG0647|consen 256 SIAFHP-VHGTLVTAGSDGTFSFWDKDARTKLKTSET 291 (347)
T ss_pred ceEeec-ccceEEEecCCceEEEecchhhhhhhccCc
Confidence 899999 556788999999999999877666666543
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.4e-19 Score=218.80 Aligned_cols=273 Identities=12% Similarity=0.195 Sum_probs=213.0
Q ss_pred ccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCC-eEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCc
Q 000270 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA-YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL 318 (1749)
Q Consensus 240 ~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg-~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk 318 (1749)
-+|..+-+.|+|.|+|.+|+|++.||.|++|+.... ....++..+...|.+++.. +.+|++|+.+++|.+|.+.+++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 368899999999999999999999999999998655 4444444477888888764 5599999999999999999988
Q ss_pred eEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEE
Q 000270 319 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCC 398 (1749)
Q Consensus 319 ~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~L 398 (1749)
.-..+...+-++.+++|+-+|. ++|.|+.|-.|++-++.+......+ .+|.++|.++
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~---~iaagsdD~~vK~~~~~D~s~~~~l--------------------rgh~apVl~l 144 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGK---MIAAGSDDTAVKLLNLDDSSQEKVL--------------------RGHDAPVLQL 144 (933)
T ss_pred ccceeeeeeccceEEEEecCCc---EEEeecCceeEEEEeccccchheee--------------------cccCCceeee
Confidence 7666666778999999999988 8999999999999998877655444 5789999999
Q ss_pred EEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCC-CCCeEEEEEcCCCcccccccccCCCCCCCCccccc
Q 000270 399 AFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH-ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNS 477 (1749)
Q Consensus 399 afSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH-~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s 477 (1749)
.|+|.+.+||+.+.||.|+||++.++......... ......- ...+..++|+|++
T Consensus 145 ~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v--~k~n~~~~s~i~~~~aW~Pk~---------------------- 200 (933)
T KOG1274|consen 145 SYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGV--DKDNEFILSRICTRLAWHPKG---------------------- 200 (933)
T ss_pred eEcCCCCEEEEEecCceEEEEEcccchhhhhcccC--CccccccccceeeeeeecCCC----------------------
Confidence 99999999999999999999999764432111100 0011111 4456778999987
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEE
Q 000270 478 WFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 557 (1749)
Q Consensus 478 ~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LAT 557 (1749)
..|+..+.|+.|++|+..+.. ..+.+. ...+...++.++|+|+|+|||+
T Consensus 201 ----g~la~~~~d~~Vkvy~r~~we---------~~f~Lr------------------~~~~ss~~~~~~wsPnG~YiAA 249 (933)
T KOG1274|consen 201 ----GTLAVPPVDNTVKVYSRKGWE---------LQFKLR------------------DKLSSSKFSDLQWSPNGKYIAA 249 (933)
T ss_pred ----CeEEeeccCCeEEEEccCCce---------eheeec------------------ccccccceEEEEEcCCCcEEee
Confidence 578888899999999887633 222211 1123344899999999999999
Q ss_pred EeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCc
Q 000270 558 AIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR 596 (1749)
Q Consensus 558 Gs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~r 596 (1749)
++.||.|.|||+.+-.. ......|++++|.|+.+.
T Consensus 250 s~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~ 284 (933)
T KOG1274|consen 250 STLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANA 284 (933)
T ss_pred eccCCcEEEEecccchh----ccccceeEEEecCCCCCe
Confidence 99999999999987222 223457999999995543
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.7e-21 Score=231.70 Aligned_cols=239 Identities=23% Similarity=0.408 Sum_probs=208.5
Q ss_pred EEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCC
Q 000270 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPD 316 (1749)
Q Consensus 237 ~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~t 316 (1749)
+.+..|...|.|+..-..++.+++|+.|..+-+|.+.....+..|.+|..+|.+|.|+++..+|++|+.+|+|+|||+..
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 45678999999999878899999999999999999988888888999999999999999999999999999999999999
Q ss_pred CceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceE
Q 000270 317 GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 396 (1749)
Q Consensus 317 gk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt 396 (1749)
++.+++|.||...+..|.|+|-+. ++++|+.|+-+++||++...|...+ .+|...|.
T Consensus 102 Ak~vrtLtgh~~~~~sv~f~P~~~---~~a~gStdtd~~iwD~Rk~Gc~~~~--------------------~s~~~vv~ 158 (825)
T KOG0267|consen 102 AKIVRTLTGHLLNITSVDFHPYGE---FFASGSTDTDLKIWDIRKKGCSHTY--------------------KSHTRVVD 158 (825)
T ss_pred hhhhhhhhccccCcceeeeccceE---EeccccccccceehhhhccCceeee--------------------cCCcceeE
Confidence 999999999999999999999986 8899999999999999866555443 45788899
Q ss_pred EEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccc
Q 000270 397 CCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKN 476 (1749)
Q Consensus 397 ~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~ 476 (1749)
++.|+|+|++++.|+.|.+++|||+.. +..+..|..|++.|.++.|+|..
T Consensus 159 ~l~lsP~Gr~v~~g~ed~tvki~d~~a---------gk~~~ef~~~e~~v~sle~hp~e--------------------- 208 (825)
T KOG0267|consen 159 VLRLSPDGRWVASGGEDNTVKIWDLTA---------GKLSKEFKSHEGKVQSLEFHPLE--------------------- 208 (825)
T ss_pred EEeecCCCceeeccCCcceeeeecccc---------cccccccccccccccccccCchh---------------------
Confidence 999999999999999999999999965 45677889999999999999865
Q ss_pred cccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEE
Q 000270 477 SWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVL 556 (1749)
Q Consensus 477 s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LA 556 (1749)
-++++|+.|++|++||+.+-+. +....+...+|.+.+|+|+|..++
T Consensus 209 -----~Lla~Gs~d~tv~f~dletfe~-----------------------------I~s~~~~~~~v~~~~fn~~~~~~~ 254 (825)
T KOG0267|consen 209 -----VLLAPGSSDRTVRFWDLETFEV-----------------------------ISSGKPETDGVRSLAFNPDGKIVL 254 (825)
T ss_pred -----hhhccCCCCceeeeeccceeEE-----------------------------eeccCCccCCceeeeecCCceeee
Confidence 4788999999999999986321 111222356799999999999999
Q ss_pred EEeCCC
Q 000270 557 AAIMDC 562 (1749)
Q Consensus 557 TGs~DG 562 (1749)
+|....
T Consensus 255 ~G~q~s 260 (825)
T KOG0267|consen 255 SGEQIS 260 (825)
T ss_pred cCchhh
Confidence 887654
|
|
| >cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-20 Score=193.40 Aligned_cols=123 Identities=45% Similarity=0.730 Sum_probs=114.0
Q ss_pred cccCcCccccCCCCCCCCCCCchhhhHHHHHHHHHHHhhcccccccccccccccc-cCCCccccCCCCCCHHHHHHHhhh
Q 000270 1613 HLHSPWELFDSDTQWEQPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVS-QKTNFTNRFPVPLSLDVIQSRLEN 1691 (1749)
Q Consensus 1613 ~rvSPWEiep~~~~~~~p~idpe~r~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~y~~~i~~PmDl~tI~~RLen 1691 (1749)
...|+|++..+. |..|.+..+.+..++..+.++... ..+..+++|..|++.. ..|+||++|++||||+||++||++
T Consensus 4 ~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~l~~l~~~-~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~ 80 (128)
T cd05529 4 PLSSEWELFDPG--WEQPHIRDEERERLISGLDKLLLS-LQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLEN 80 (128)
T ss_pred CCCCchhccccc--CcCCCCCHHHHHHHHHHHHHHHhc-ccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhc
Confidence 456999986655 899999999999999999999765 3678899999999988 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhc
Q 000270 1692 NYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1738 (1749)
Q Consensus 1692 ~~Yr~~~~~~~Dv~li~~N~~~fN~~~s~~~~~a~~l~~~~~~~l~~ 1738 (1749)
++|+++++|..||+|||.||++||++++.++++|+.|+++|.++|++
T Consensus 81 ~~Y~s~~~f~~Dv~Li~~Na~~yN~~~s~i~~~A~~l~~~~~~~l~~ 127 (128)
T cd05529 81 RYYRSLEALRHDVRLILSNAETFNEPNSEIAKKAKRLSDWLLRILSS 127 (128)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999875
|
WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=203.60 Aligned_cols=288 Identities=10% Similarity=0.135 Sum_probs=226.7
Q ss_pred CCCEEEEEECCCCCEEEEEeCCcEEEEEECC--CCeEEEEEccCCCCeEEEEEcCCCc-EEEEEeCCCeEEEEECCCCce
Q 000270 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSME--TAYCLASCRGHEGDITDLAVSSNNA-LVASASNDCIIRVWRLPDGLP 319 (1749)
Q Consensus 243 ~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~--Tg~~l~tL~gHs~~VtsLafSPDg~-lLASGS~DGtIrVWDl~tgk~ 319 (1749)
.+.|+||.|+|....|++|+.||+++||-++ +...++.+.--..+|.+++|.|+|. .+++++....+..||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 4689999999999999999999999999886 3446667666788999999999999 899999999999999998864
Q ss_pred EE--EecCCC-CceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceE
Q 000270 320 IS--VLRGHT-AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 396 (1749)
Q Consensus 320 l~--tL~gHs-~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt 396 (1749)
.. .+.++. ..+.....+++++ +|+..+..|.|.+....+++.+..+.+ .+.|.
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~---fia~~G~~G~I~lLhakT~eli~s~Ki---------------------eG~v~ 348 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSN---FIAIAGNNGHIHLLHAKTKELITSFKI---------------------EGVVS 348 (514)
T ss_pred ccccCCCCcccchhheeEecCCCC---eEEEcccCceEEeehhhhhhhhheeee---------------------ccEEe
Confidence 43 333443 3567788899987 999999999999999999988877653 46699
Q ss_pred EEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCC-CeEEEEEcCCCcccccccccCCCCCCCCccc
Q 000270 397 CCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN-DVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475 (1749)
Q Consensus 397 ~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~-~V~sVafSpdg~as~~s~~~~~~~~~~~~~~ 475 (1749)
.++|+.+|+.|++.+.+|.|.+||++.. .++..+....+ .-+++|.+.++
T Consensus 349 ~~~fsSdsk~l~~~~~~GeV~v~nl~~~---------~~~~rf~D~G~v~gts~~~S~ng-------------------- 399 (514)
T KOG2055|consen 349 DFTFSSDSKELLASGGTGEVYVWNLRQN---------SCLHRFVDDGSVHGTSLCISLNG-------------------- 399 (514)
T ss_pred eEEEecCCcEEEEEcCCceEEEEecCCc---------ceEEEEeecCccceeeeeecCCC--------------------
Confidence 9999999999999999999999999753 33443332211 23455555655
Q ss_pred ccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEE
Q 000270 476 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFV 555 (1749)
Q Consensus 476 ~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~L 555 (1749)
.+||+|+..|.|-|||..+-. ......++..+......|+.++|++|++.|
T Consensus 400 ------~ylA~GS~~GiVNIYd~~s~~-----------------------~s~~PkPik~~dNLtt~Itsl~Fn~d~qiL 450 (514)
T KOG2055|consen 400 ------SYLATGSDSGIVNIYDGNSCF-----------------------ASTNPKPIKTVDNLTTAITSLQFNHDAQIL 450 (514)
T ss_pred ------ceEEeccCcceEEEeccchhh-----------------------ccCCCCchhhhhhhheeeeeeeeCcchhhh
Confidence 799999999999999977511 111234556666667789999999999999
Q ss_pred EEEe--CCCeEEEEECCCCceEEEecC---CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 000270 556 LAAI--MDCRICVWNAADGSLVHSLTG---HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1749)
Q Consensus 556 ATGs--~DGtI~VWDl~tgklv~tL~g---H~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~ 613 (1749)
|.++ ....+++--+.+......+.. .-+.|++|+|+| ++.+|+.|..+|.|.+|.+.
T Consensus 451 AiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP-~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 451 AIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSP-NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecC-CCceEEeecCCCceeeEeec
Confidence 9887 466788888776655544432 234689999999 77788999999999999873
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.8e-18 Score=201.72 Aligned_cols=279 Identities=15% Similarity=0.259 Sum_probs=217.1
Q ss_pred CEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEec
Q 000270 245 AVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR 324 (1749)
Q Consensus 245 ~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~ 324 (1749)
.|+.++|-|||..|+.+.. ..+.|||...|..+.++++|...|.+++|+.||+++|+|+.|..|.||+-.-...+ . -
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-k-Y 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-K-Y 90 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-e-e
Confidence 8999999999998887755 47999999999999999999999999999999999999999999999985322211 2 2
Q ss_pred CCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCC
Q 000270 325 GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG 404 (1749)
Q Consensus 325 gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG 404 (1749)
.|+..|.|+.|.|-.. .|++++-. ..-+|.......... .....|.+++|..||
T Consensus 91 SH~D~IQCMsFNP~~h---~LasCsLs-dFglWS~~qK~V~K~----------------------kss~R~~~CsWtnDG 144 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITH---QLASCSLS-DFGLWSPEQKSVSKH----------------------KSSSRIICCSWTNDG 144 (1081)
T ss_pred ccCCeeeEeecCchHH---Hhhhcchh-hccccChhhhhHHhh----------------------hhheeEEEeeecCCC
Confidence 5999999999999765 77877653 367887654432211 124568999999999
Q ss_pred CEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEE
Q 000270 405 TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI 484 (1749)
Q Consensus 405 ~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~L 484 (1749)
++|+.|-.+|+|.|-+-. +.+...+..-.|...+|++|+|+|..... ..+.+
T Consensus 145 qylalG~~nGTIsiRNk~-------gEek~~I~Rpgg~Nspiwsi~~~p~sg~G---------------------~~di~ 196 (1081)
T KOG1538|consen 145 QYLALGMFNGTISIRNKN-------GEEKVKIERPGGSNSPIWSICWNPSSGEG---------------------RNDIL 196 (1081)
T ss_pred cEEEEeccCceEEeecCC-------CCcceEEeCCCCCCCCceEEEecCCCCCC---------------------ccceE
Confidence 999999999999997652 22333444455678899999999975211 12577
Q ss_pred EEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeE
Q 000270 485 VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRI 564 (1749)
Q Consensus 485 aSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI 564 (1749)
++..-..++.++.+.. + .+..-....-...|+.+.++|.+++.|+.|+.+
T Consensus 197 aV~DW~qTLSFy~LsG-~-----------------------------~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L 246 (1081)
T KOG1538|consen 197 AVADWGQTLSFYQLSG-K-----------------------------QIGKDRALNFDPCCISYFTNGEYILLGGSDKQL 246 (1081)
T ss_pred EEEeccceeEEEEecc-e-----------------------------eecccccCCCCchhheeccCCcEEEEccCCCce
Confidence 7777777777776653 1 111111122245688999999999999999999
Q ss_pred EEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 000270 565 CVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1749)
Q Consensus 565 ~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl 612 (1749)
++|- +.|-.+.++......|+.++.+| +++.++.|+.||+|..|++
T Consensus 247 ~~fT-R~GvrLGTvg~~D~WIWtV~~~P-NsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 247 SLFT-RDGVRLGTVGEQDSWIWTVQAKP-NSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred EEEe-ecCeEEeeccccceeEEEEEEcc-CCceEEEEEccCeeehhhh
Confidence 9997 56888888877888999999999 8888899999999999874
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.3e-19 Score=192.81 Aligned_cols=264 Identities=19% Similarity=0.275 Sum_probs=202.9
Q ss_pred ccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCC---ceEEEecCCCCceEEEEecc--CCCcceEEEeecCCCcEEE
Q 000270 282 RGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG---LPISVLRGHTAAVTAIAFSP--RPGSVYQLLSSSDDGTCRI 356 (1749)
Q Consensus 282 ~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tg---k~l~tL~gHs~~VtsIaFSP--dg~~~~~LaSgS~DGtIrI 356 (1749)
..|...|.++...-.|+.|||++.|++|+|+.+... .++..|.||.++|..++|.. .|. +||+++.||.|.|
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~---iLAScsYDgkVIi 84 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT---ILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc---EeeEeecCceEEE
Confidence 468899999888889999999999999999998754 56889999999999999986 444 9999999999999
Q ss_pred EEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCC--CCEEEEecCCCcEEEEeCCCCCCCCCCCCCc
Q 000270 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN--GTVFVTGSSDTLARVWNACKPNTDDSDQPNH 434 (1749)
Q Consensus 357 WDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPD--G~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~ 434 (1749)
|.-.+++..... ....|...|++++|.|. |-.|++++.||.|.|.+++... ...
T Consensus 85 Wke~~g~w~k~~------------------e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g------~w~ 140 (299)
T KOG1332|consen 85 WKEENGRWTKAY------------------EHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG------GWT 140 (299)
T ss_pred EecCCCchhhhh------------------hhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC------Ccc
Confidence 998877543322 23568889999999995 5689999999999999986531 122
Q ss_pred ceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCcccccccccc
Q 000270 435 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 514 (1749)
Q Consensus 435 ~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~ 514 (1749)
.......|.-.|++++|.|...... ..... .......|++|+.|..|+||+...+. |
T Consensus 141 t~ki~~aH~~GvnsVswapa~~~g~--~~~~~----------~~~~~krlvSgGcDn~VkiW~~~~~~-------w---- 197 (299)
T KOG1332|consen 141 TSKIVFAHEIGVNSVSWAPASAPGS--LVDQG----------PAAKVKRLVSGGCDNLVKIWKFDSDS-------W---- 197 (299)
T ss_pred chhhhhccccccceeeecCcCCCcc--ccccC----------cccccceeeccCCccceeeeecCCcc-------h----
Confidence 3345678999999999998642100 00000 00112689999999999999987632 1
Q ss_pred ccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCC----CEEEEEeCCCeEEEEECCCC--c-eEEEecCCCCCeEE
Q 000270 515 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN----RFVLAAIMDCRICVWNAADG--S-LVHSLTGHTESTYV 587 (1749)
Q Consensus 515 ~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG----~~LATGs~DGtI~VWDl~tg--k-lv~tL~gH~~~Vts 587 (1749)
....++.+|...|..+||.|.- .+||+++.||+|.||-...- . ....+......++.
T Consensus 198 ----------------~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~ 261 (299)
T KOG1332|consen 198 ----------------KLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWR 261 (299)
T ss_pred ----------------hhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEE
Confidence 1223478899999999999965 57999999999999987521 1 11233345678999
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEeC
Q 000270 588 LDVHPFNPRIAMSAGYDGKTIVWDI 612 (1749)
Q Consensus 588 LafSPdd~rlLaSgs~DGtIrVWDl 612 (1749)
+.||. .+.+|+.++.|..|.+|.-
T Consensus 262 vSWS~-sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 262 VSWSL-SGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred EEEec-cccEEEEecCCcEEEEEEe
Confidence 99999 6778888889999999964
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.3e-18 Score=212.11 Aligned_cols=249 Identities=18% Similarity=0.249 Sum_probs=202.9
Q ss_pred cCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCC-ceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCC
Q 000270 283 GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG-LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY 361 (1749)
Q Consensus 283 gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tg-k~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~t 361 (1749)
+|..+-+.|+|.|+|.+|++++.||.|++|+..+. +...++.-++..|.+++.... +|++|+.+++|.+|.+..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~-----~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN-----HFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc-----ceEEeeccceEEEeeCCC
Confidence 68999999999999999999999999999997665 333444447788888887653 799999999999999887
Q ss_pred CcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecC
Q 000270 362 SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG 441 (1749)
Q Consensus 362 g~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~g 441 (1749)
+..-..+ ....-++.+++|+.+|.++|.|+.|-.|++.++.. ......+.+
T Consensus 86 ~~~~~iL--------------------~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D---------~s~~~~lrg 136 (933)
T KOG1274|consen 86 GEEDTIL--------------------ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD---------SSQEKVLRG 136 (933)
T ss_pred CCcccee--------------------eeeeccceEEEEecCCcEEEeecCceeEEEEeccc---------cchheeecc
Confidence 7643222 22355699999999999999999999999999865 335678999
Q ss_pred CCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCC
Q 000270 442 HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPP 521 (1749)
Q Consensus 442 H~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~ 521 (1749)
|.++|.+|.|+|.+ .+||+.+.||.|++|++.++.........
T Consensus 137 h~apVl~l~~~p~~--------------------------~fLAvss~dG~v~iw~~~~~~~~~tl~~v----------- 179 (933)
T KOG1274|consen 137 HDAPVLQLSYDPKG--------------------------NFLAVSSCDGKVQIWDLQDGILSKTLTGV----------- 179 (933)
T ss_pred cCCceeeeeEcCCC--------------------------CEEEEEecCceEEEEEcccchhhhhcccC-----------
Confidence 99999999999987 89999999999999999976533221110
Q ss_pred CCCCCCCCCCCcccccCC-CCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecC--CCCCeEEEEEcCCCCcEE
Q 000270 522 PMPPQPPRGGPRQRILPT-PRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTG--HTESTYVLDVHPFNPRIA 598 (1749)
Q Consensus 522 ~~~~~~~~g~~i~~l~~h-~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~g--H~~~VtsLafSPdd~rlL 598 (1749)
....... ...++.++|+|+|..+|+.+.|+.|++|+..++.....|.. |...+..++|+| .|.+|
T Consensus 180 -----------~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP-nG~Yi 247 (933)
T KOG1274|consen 180 -----------DKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP-NGKYI 247 (933)
T ss_pred -----------CccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC-CCcEE
Confidence 0000111 44578899999999999999999999999999999888764 444599999999 79999
Q ss_pred EEEeCCCcEEEEeCCC
Q 000270 599 MSAGYDGKTIVWDIWE 614 (1749)
Q Consensus 599 aSgs~DGtIrVWDl~t 614 (1749)
|+++.||.|.|||+.+
T Consensus 248 AAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 248 AASTLDGQILVWNVDT 263 (933)
T ss_pred eeeccCCcEEEEeccc
Confidence 9999999999999986
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-19 Score=207.45 Aligned_cols=290 Identities=21% Similarity=0.262 Sum_probs=223.1
Q ss_pred CccccccccccccccCcccccCCCcchhhhhccccCCCcccccc--ceEEEEc--cCCCCEEEEEECCCCCEEEEEeCCc
Q 000270 190 MYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKM--QNIKRVR--GHRNAVYCAIFDRSGRYVITGSDDR 265 (1749)
Q Consensus 190 ~~~~~V~~l~~r~~gg~~~~~~~~~~l~~~~~~~a~p~~~~~~~--~~i~tL~--GH~~~Vt~VaFSPDG~~LATGS~DG 265 (1749)
.|+.+++.+...+.-...+..+....+.......++.|...+.. ..+..|. .-.+-|.++.+.|||+.|++|+.-.
T Consensus 408 rharq~~tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeas 487 (705)
T KOG0639|consen 408 RHARQINTLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEAS 487 (705)
T ss_pred chHHhhhhhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccc
Confidence 34555566655555444444444444444443333333322221 1222232 2356788999999999999999999
Q ss_pred EEEEEECCCCe--EEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcce
Q 000270 266 LVKIWSMETAY--CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVY 343 (1749)
Q Consensus 266 tVrIWDl~Tg~--~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~ 343 (1749)
+|.|||+.+.. ....+....-..++|+.+||.++.+++..||.|.|||+.+...++.|+||+..+.||..++||.
T Consensus 488 tlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGt--- 564 (705)
T KOG0639|consen 488 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGT--- 564 (705)
T ss_pred eeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCc---
Confidence 99999997543 3344554456788999999999999999999999999999999999999999999999999997
Q ss_pred EEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCC
Q 000270 344 QLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACK 423 (1749)
Q Consensus 344 ~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t 423 (1749)
.|.+|+-|.+|+.||+++++.+.... ...+|.++.++|.+.||++|-..+.|.|.....
T Consensus 565 klWTGGlDntvRcWDlregrqlqqhd---------------------F~SQIfSLg~cP~~dWlavGMens~vevlh~sk 623 (705)
T KOG0639|consen 565 KLWTGGLDNTVRCWDLREGRQLQQHD---------------------FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK 623 (705)
T ss_pred eeecCCCccceeehhhhhhhhhhhhh---------------------hhhhheecccCCCccceeeecccCcEEEEecCC
Confidence 89999999999999999988665432 245799999999999999999999999988753
Q ss_pred CCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCC
Q 000270 424 PNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRS 503 (1749)
Q Consensus 424 ~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~ 503 (1749)
.....+..|..-|.++.|.++| +++++.+.|.-+-.|.+.-+..
T Consensus 624 ----------p~kyqlhlheScVLSlKFa~cG--------------------------kwfvStGkDnlLnawrtPyGas 667 (705)
T KOG0639|consen 624 ----------PEKYQLHLHESCVLSLKFAYCG--------------------------KWFVSTGKDNLLNAWRTPYGAS 667 (705)
T ss_pred ----------ccceeecccccEEEEEEecccC--------------------------ceeeecCchhhhhhccCccccc
Confidence 2345677899999999999987 8999999999999997654321
Q ss_pred CccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 000270 504 HPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 569 (1749)
Q Consensus 504 ~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl 569 (1749)
+ .. ......|.++.+|.|+++|+||+.|....||.+
T Consensus 668 i-----------------------------Fq-skE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 668 I-----------------------------FQ-SKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred e-----------------------------ee-ccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 1 11 113457999999999999999999988888865
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-18 Score=201.15 Aligned_cols=299 Identities=19% Similarity=0.243 Sum_probs=226.7
Q ss_pred EECCCCeEEEEEccCCCCeEEEEEcCC--CcEEEEEeCCCeEEEEECCCC----ceEEEecCCCCceEEEEeccCCCcce
Q 000270 270 WSMETAYCLASCRGHEGDITDLAVSSN--NALVASASNDCIIRVWRLPDG----LPISVLRGHTAAVTAIAFSPRPGSVY 343 (1749)
Q Consensus 270 WDl~Tg~~l~tL~gHs~~VtsLafSPD--g~lLASGS~DGtIrVWDl~tg----k~l~tL~gHs~~VtsIaFSPdg~~~~ 343 (1749)
.|+.+-......+-|.+.|++++|+|. -+++|+|..-|.|-+||+.+. .-+..+..|.++|.+|.|+|.+. .
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~--s 248 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT--S 248 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh--h
Confidence 334444455556678999999999994 368999999999999999532 34566788999999999999875 3
Q ss_pred EEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCC
Q 000270 344 QLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACK 423 (1749)
Q Consensus 344 ~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t 423 (1749)
.+++.+.||+|++-|+..+.....+.. ......+..+.|+.+...+++|..=|...+||.++
T Consensus 249 ~i~ssSyDGtiR~~D~~~~i~e~v~s~------------------~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~ 310 (498)
T KOG4328|consen 249 QIYSSSYDGTIRLQDFEGNISEEVLSL------------------DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRT 310 (498)
T ss_pred heeeeccCceeeeeeecchhhHHHhhc------------------CccceeeeeccccCCCccEEEeecccceEEEEeec
Confidence 789999999999999987654333321 12234567788988888888888878999999987
Q ss_pred CCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCC
Q 000270 424 PNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRS 503 (1749)
Q Consensus 424 ~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~ 503 (1749)
+. .....+.-|...|.+|+++|.. +.+|+|+|.|++++|||++.-..
T Consensus 311 ~~--------s~~~~~~lh~kKI~sv~~NP~~-------------------------p~~laT~s~D~T~kIWD~R~l~~ 357 (498)
T KOG4328|consen 311 DG--------SEYENLRLHKKKITSVALNPVC-------------------------PWFLATASLDQTAKIWDLRQLRG 357 (498)
T ss_pred CC--------ccchhhhhhhcccceeecCCCC-------------------------chheeecccCcceeeeehhhhcC
Confidence 43 3455667788899999999965 47899999999999999986221
Q ss_pred CccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECC----CCceEEEec
Q 000270 504 HPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAA----DGSLVHSLT 579 (1749)
Q Consensus 504 ~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~----tgklv~tL~ 579 (1749)
...+......|...|.++.|||.|-.|+|.+.|..|+|||.. .-.++.++.
T Consensus 358 -------------------------K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~ 412 (498)
T KOG4328|consen 358 -------------------------KASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP 412 (498)
T ss_pred -------------------------CCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee
Confidence 011244556788999999999999889999999999999984 233333332
Q ss_pred CCC------CCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEee----------eecc-CCCEEEEEcCCCeEE
Q 000270 580 GHT------ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEI----------SRFR-DGASIILSDDVGQLY 642 (1749)
Q Consensus 580 gH~------~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~----------~~~s-DG~~LAsgd~DG~I~ 642 (1749)
|. -.....+|.| +..+++.|-.-..|-|+|-..|+.+..+.. +++| +..++|.++..|.|+
T Consensus 413 -Hn~~t~RwlT~fKA~W~P-~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~ 490 (498)
T KOG4328|consen 413 -HNNRTGRWLTPFKAAWDP-DYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIY 490 (498)
T ss_pred -ccCcccccccchhheeCC-CccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEE
Confidence 21 1345678999 778888999999999999988887766542 2444 444777778899999
Q ss_pred EEECCC
Q 000270 643 ILNTGQ 648 (1749)
Q Consensus 643 IWdl~t 648 (1749)
||-...
T Consensus 491 vft~k~ 496 (498)
T KOG4328|consen 491 VFTNKK 496 (498)
T ss_pred EEecCC
Confidence 997643
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.4e-18 Score=191.65 Aligned_cols=269 Identities=17% Similarity=0.224 Sum_probs=195.9
Q ss_pred ccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCC----ceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEE
Q 000270 282 RGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG----LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW 357 (1749)
Q Consensus 282 ~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tg----k~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIW 357 (1749)
.+|..-|.++.|.+.|+.+|+|+.|++|+|||..+. .+....+.|.+.|..|.|.+-.- ...+|+++.|+++.||
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEf-GqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEF-GQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccc-cceEEEEecCCceeee
Confidence 378899999999999999999999999999996543 56677889999999999987643 2389999999999999
Q ss_pred EcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcC--CCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcc
Q 000270 358 DARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA--NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHE 435 (1749)
Q Consensus 358 Dl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSP--DG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~ 435 (1749)
.-...... ..+..+............|+.+.|.| -|-.||+++.||+||||++-.+-....-.....
T Consensus 89 EE~~~~~~-----------~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~E 157 (361)
T KOG2445|consen 89 EEQEKSEE-----------AHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHE 157 (361)
T ss_pred eecccccc-----------cccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhh
Confidence 74211100 00222222333445567899999999 477899999999999999854321111111111
Q ss_pred ee----eecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCC-----CcEEEEecCCCCCCcc
Q 000270 436 ID----VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD-----GSAIIWIPRSRRSHPK 506 (1749)
Q Consensus 436 i~----~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~D-----GtIrIWDl~s~k~~~~ 506 (1749)
+. ....+.....||.|++.. +...+|+.|+.+ +.++||.......
T Consensus 158 i~~~~~pp~~~~~~~~CvsWn~sr-----------------------~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r--- 211 (361)
T KOG2445|consen 158 IQNVIDPPGKNKQPCFCVSWNPSR-----------------------MHEPLIAVGSDEDAPHLNKVKIYEYNENGR--- 211 (361)
T ss_pred hhhccCCcccccCcceEEeecccc-----------------------ccCceEEEEcccCCccccceEEEEecCCcc---
Confidence 11 223466678889998643 234678887766 5788987654210
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCC----CEEEEEeCCCeEEEEECCCC----------
Q 000270 507 AARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN----RFVLAAIMDCRICVWNAADG---------- 572 (1749)
Q Consensus 507 ~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG----~~LATGs~DGtI~VWDl~tg---------- 572 (1749)
. -..+..+.+|..+|+.++|.|+- ..||+|+.|| |+||.+...
T Consensus 212 --K--------------------w~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~ 268 (361)
T KOG2445|consen 212 --K--------------------WLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVL 268 (361)
T ss_pred --e--------------------eeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhccc
Confidence 1 12234566889999999999963 5799999999 999998631
Q ss_pred ----------ceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 000270 573 ----------SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1749)
Q Consensus 573 ----------klv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl 612 (1749)
+.+..+.+|.+.|..+.|.- -+.+|+|.|.||+|++|..
T Consensus 269 ~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm-tGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 269 APDLMTDLPVEKVSELDDHNGEVWRVRWNM-TGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred CCCCccccceEEeeeccCCCCceEEEEEee-eeeEEeecCCCceeeehhh
Confidence 23456788999999999988 6789999999999999975
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-18 Score=199.07 Aligned_cols=307 Identities=18% Similarity=0.231 Sum_probs=226.2
Q ss_pred ccceEEEEccCCCCEEEEEECCCC--CEEEEEeCCcEEEEEECCCC----eEEEEEccCCCCeEEEEEcC-CCcEEEEEe
Q 000270 232 KMQNIKRVRGHRNAVYCAIFDRSG--RYVITGSDDRLVKIWSMETA----YCLASCRGHEGDITDLAVSS-NNALVASAS 304 (1749)
Q Consensus 232 ~~~~i~tL~GH~~~Vt~VaFSPDG--~~LATGS~DGtVrIWDl~Tg----~~l~tL~gHs~~VtsLafSP-Dg~lLASGS 304 (1749)
........+-|.+.|+|++|+|.. ++||+|..-|+|-+||+.+. ..+..+..|.++|.+|.|+| +...+++.|
T Consensus 175 ~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS 254 (498)
T KOG4328|consen 175 DYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS 254 (498)
T ss_pred cceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeec
Confidence 345566778899999999999965 58889999999999999532 34667889999999999999 456888999
Q ss_pred CCCeEEEEECCCCce--EEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCC
Q 000270 305 NDCIIRVWRLPDGLP--ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 382 (1749)
Q Consensus 305 ~DGtIrVWDl~tgk~--l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~ 382 (1749)
.||+|++-|++.+.. +..+..-...+..+.|+.+.. .++.+..=|.+.+||++++......
T Consensus 255 yDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~---~vl~~~~~G~f~~iD~R~~~s~~~~-------------- 317 (498)
T KOG4328|consen 255 YDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESR---SVLFGDNVGNFNVIDLRTDGSEYEN-------------- 317 (498)
T ss_pred cCceeeeeeecchhhHHHhhcCccceeeeeccccCCCc---cEEEeecccceEEEEeecCCccchh--------------
Confidence 999999999987643 333333455677888888765 5677777779999999987532111
Q ss_pred CCCCCCCCCCCceEEEEEcCCC-CEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccc
Q 000270 383 APSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFS 461 (1749)
Q Consensus 383 ~~~~s~~~h~~~Vt~LafSPDG-~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s 461 (1749)
..-|...|..++++|.. .+||+++.|++++|||++......+ .+.....|...|.+..|+|.+
T Consensus 318 -----~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s-----p~lst~~HrrsV~sAyFSPs~------ 381 (498)
T KOG4328|consen 318 -----LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS-----PFLSTLPHRRSVNSAYFSPSG------ 381 (498)
T ss_pred -----hhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC-----cceecccccceeeeeEEcCCC------
Confidence 12355689999999954 5899999999999999976432111 245667899999999999987
Q ss_pred cccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCC
Q 000270 462 LADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR 541 (1749)
Q Consensus 462 ~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~ 541 (1749)
..|+|.+.|..|+|||..- +..|... ...+..-..+..
T Consensus 382 --------------------gtl~TT~~D~~IRv~dss~------~sa~~~p----------------~~~I~Hn~~t~R 419 (498)
T KOG4328|consen 382 --------------------GTLLTTCQDNEIRVFDSSC------ISAKDEP----------------LGTIPHNNRTGR 419 (498)
T ss_pred --------------------CceEeeccCCceEEeeccc------ccccCCc----------------cceeeccCcccc
Confidence 4599999999999999741 0000000 000000000111
Q ss_pred --CeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCC-CeEE-EEEcCCCCcEEEEEeCCCcEEEEeCC
Q 000270 542 --GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTE-STYV-LDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1749)
Q Consensus 542 --~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~-~Vts-LafSPdd~rlLaSgs~DGtIrVWDl~ 613 (1749)
.....+|.|+..+|++|-.-..|-|+|...++.+..+.+... .|.+ ..|||.+..+++.++..|.|.||--.
T Consensus 420 wlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 420 WLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 234568999999999999999999999999998888765443 4544 58999665577666778889988654
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-16 Score=186.90 Aligned_cols=327 Identities=26% Similarity=0.486 Sum_probs=251.9
Q ss_pred EEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCe-EEEEEccCCC-CeEEEEE-cCCCc-EEEEEeC-CCeEEE
Q 000270 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY-CLASCRGHEG-DITDLAV-SSNNA-LVASASN-DCIIRV 311 (1749)
Q Consensus 237 ~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~-~l~tL~gHs~-~VtsLaf-SPDg~-lLASGS~-DGtIrV 311 (1749)
..+.+|...|.++.|.+.+..++.++.|+.|.+|+...+. .+..+.++.. .+..+.+ ++++. +++..+. |+.+.+
T Consensus 59 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred heeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence 3577899999999999999999999999999999999887 7777776443 7888888 88887 5555455 999999
Q ss_pred EECCC-CceEEEecCCCCceEEEEeccCCCcceEEEeecC-CCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCC
Q 000270 312 WRLPD-GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD-DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389 (1749)
Q Consensus 312 WDl~t-gk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~-DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~ 389 (1749)
|++.. ......+..|...|..++|+|++. .+++++. |+.+++|++..+..+..+ .
T Consensus 139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~ 195 (466)
T COG2319 139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGK---LLASGSSLDGTIKLWDLRTGKPLSTL--------------------A 195 (466)
T ss_pred EEecCCCeEEEEEecCcccEEEEEECCCCC---EEEecCCCCCceEEEEcCCCceEEee--------------------c
Confidence 99988 788888999999999999999987 7777775 999999999875544433 2
Q ss_pred CCCCceEEEEEcCCCC-EEEEecCCCcEEEEeCCCCCCCCCCCCCccee-eecCCCCCeEEEEEcCCCcccccccccCCC
Q 000270 390 PQSHQIFCCAFNANGT-VFVTGSSDTLARVWNACKPNTDDSDQPNHEID-VLSGHENDVNYVQFSGCAVASRFSLADSSK 467 (1749)
Q Consensus 390 ~h~~~Vt~LafSPDG~-~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~-~l~gH~~~V~sVafSpdg~as~~s~~~~~~ 467 (1749)
.|...|.+++|+|++. .+++++.|+.|++||... ...+. .+.+|...+ ...|++++
T Consensus 196 ~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~---------~~~~~~~~~~~~~~~-~~~~~~~~------------ 253 (466)
T COG2319 196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST---------GKLLRSTLSGHSDSV-VSSFSPDG------------ 253 (466)
T ss_pred cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCC---------CcEEeeecCCCCcce-eEeECCCC------------
Confidence 3778899999999998 555558999999998752 33344 577887775 44788765
Q ss_pred CCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEE
Q 000270 468 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 547 (1749)
Q Consensus 468 ~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVa 547 (1749)
..+++++.|+.+++|++..... ....+..|...|.++.
T Consensus 254 --------------~~~~~~~~d~~~~~~~~~~~~~----------------------------~~~~~~~~~~~v~~~~ 291 (466)
T COG2319 254 --------------SLLASGSSDGTIRLWDLRSSSS----------------------------LLRTLSGHSSSVLSVA 291 (466)
T ss_pred --------------CEEEEecCCCcEEEeeecCCCc----------------------------EEEEEecCCccEEEEE
Confidence 5788999999999999885331 1111245677899999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCceEEEec--CCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEeCCCCceEEEEeee
Q 000270 548 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLT--GHTESTYVLDVHPFN-PRIAMSAGYDGKTIVWDIWEGIPIRIYEIS 624 (1749)
Q Consensus 548 fSPDG~~LATGs~DGtI~VWDl~tgklv~tL~--gH~~~VtsLafSPdd-~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~ 624 (1749)
|+|++..+++++.|+.+.+|+..+........ .|...|..+.| +.+ ..++.++..|+.+.+|++............
T Consensus 292 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 370 (466)
T COG2319 292 FSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH 370 (466)
T ss_pred ECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCceeEEecCC
Confidence 99999999999999999999999888777766 88888999999 534 344444468899999999887633222211
Q ss_pred -------eccCCCEEE-EEcCCCeEEEEECCCCccc
Q 000270 625 -------RFRDGASII-LSDDVGQLYILNTGQGESQ 652 (1749)
Q Consensus 625 -------~~sDG~~LA-sgd~DG~I~IWdl~tGe~~ 652 (1749)
...+ ..++ .+..++.+.+|+.......
T Consensus 371 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 405 (466)
T COG2319 371 SNVLSVSFSPD-GRVVSSGSTDGTVRLWDLSTGSLL 405 (466)
T ss_pred ceEEEEEECCC-CCEEEEecCCCceEEEecccCeee
Confidence 1112 2333 3688899999998766543
|
|
| >cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I | Back alignment and domain information |
|---|
Probab=99.80 E-value=9e-20 Score=183.66 Aligned_cols=102 Identities=21% Similarity=0.314 Sum_probs=93.8
Q ss_pred hHHHHHHHHHHHhhcccccccccccccccc--cCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhc
Q 000270 1638 NKLLSAFAKLEQSANRVQDQYGVQKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYF 1715 (1749)
Q Consensus 1638 ~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN 1715 (1749)
+++.-.+..+++.+..+..+|+|..||+.. ..||||++|++||||+||++||++++|+++++|..||+|||.||++||
T Consensus 4 ~q~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN 83 (107)
T cd05497 4 NQLQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYN 83 (107)
T ss_pred HHHHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 445556677777888899999999999865 689999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcC
Q 000270 1716 GRNTDLSTKIKRLSDLVTRTLSSL 1739 (1749)
Q Consensus 1716 ~~~s~~~~~a~~l~~~~~~~l~~~ 1739 (1749)
+++++++++|..|+++|.++|+++
T Consensus 84 ~~~s~i~~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 84 KPGDDVVLMAQTLEKLFLQKLAQM 107 (107)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999764
|
Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.5e-18 Score=202.38 Aligned_cols=197 Identities=14% Similarity=0.185 Sum_probs=145.7
Q ss_pred eEEEEEcC-CCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCc
Q 000270 395 IFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1749)
Q Consensus 395 Vt~LafSP-DG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~ 473 (1749)
|+.+.|.| |...||+++.||.|++|.+..+.... ........+.+|...|+++.|+|-.
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e--~~~tPe~~lt~h~eKI~slRfHPLA------------------ 689 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE--NEMTPEKILTIHGEKITSLRFHPLA------------------ 689 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCc--ccCCcceeeecccceEEEEEecchh------------------
Confidence 66788888 66789999999999999997654322 2234456788999999999999964
Q ss_pred ccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCC
Q 000270 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 553 (1749)
Q Consensus 474 ~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~ 553 (1749)
.+.|++++.|-+|+|||+.+.+ ...++.+|...|..++|||||+
T Consensus 690 -------advLa~asyd~Ti~lWDl~~~~-----------------------------~~~~l~gHtdqIf~~AWSpdGr 733 (1012)
T KOG1445|consen 690 -------ADVLAVASYDSTIELWDLANAK-----------------------------LYSRLVGHTDQIFGIAWSPDGR 733 (1012)
T ss_pred -------hhHhhhhhccceeeeeehhhhh-----------------------------hhheeccCcCceeEEEECCCCc
Confidence 2789999999999999998633 3456788999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCc-eEEEecCCCC-CeEEEEEcCCCCcEEEEEeCC----CcEEEEeCCC--CceEEEEeeee
Q 000270 554 FVLAAIMDCRICVWNAADGS-LVHSLTGHTE-STYVLDVHPFNPRIAMSAGYD----GKTIVWDIWE--GIPIRIYEISR 625 (1749)
Q Consensus 554 ~LATGs~DGtI~VWDl~tgk-lv~tL~gH~~-~VtsLafSPdd~rlLaSgs~D----GtIrVWDl~t--Gk~l~tl~~~~ 625 (1749)
.+|+.+.||+|+||+..++. .+..-.|..+ .--.|.|.- ++++++..|.| ..|.+||..+ +.++.+.....
T Consensus 734 ~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wac-dgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv 812 (1012)
T KOG1445|consen 734 RIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWAC-DGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV 812 (1012)
T ss_pred ceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEe-cCcEEEEecccccchhhhhhhhhhhccCCcceeeeecc
Confidence 99999999999999987764 3443333211 123455655 67777777766 4588898765 34554443321
Q ss_pred cc---------C-CCEEEEEcCCCeEEEEECCC
Q 000270 626 FR---------D-GASIILSDDVGQLYILNTGQ 648 (1749)
Q Consensus 626 ~s---------D-G~~LAsgd~DG~I~IWdl~t 648 (1749)
.+ | +.++++|-.|..|++|.+-.
T Consensus 813 aps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 813 APSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred cCccccccccCCCceEEEecCCCceEEEEEecC
Confidence 11 4 45666777788999998743
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.7e-19 Score=217.81 Aligned_cols=243 Identities=19% Similarity=0.348 Sum_probs=192.7
Q ss_pred EEEEEECC-CCCEEEEEeCCcEEEEEECCC---CeEEEEEccCCCCeEEEEEcC-CCcEEEEEeCCCeEEEEECCCCceE
Q 000270 246 VYCAIFDR-SGRYVITGSDDRLVKIWSMET---AYCLASCRGHEGDITDLAVSS-NNALVASASNDCIIRVWRLPDGLPI 320 (1749)
Q Consensus 246 Vt~VaFSP-DG~~LATGS~DGtVrIWDl~T---g~~l~tL~gHs~~VtsLafSP-Dg~lLASGS~DGtIrVWDl~tgk~l 320 (1749)
+..|.|.. +.++|||++..|.|.+||+.. .+++..|..|...|.++.|++ ...+|++||.||+|++||++..+..
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 44466664 467999999999999999986 566778899999999999998 5679999999999999999999999
Q ss_pred EEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEE
Q 000270 321 SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 400 (1749)
Q Consensus 321 ~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~Laf 400 (1749)
.++.+....|..|+|+|... +.|+++.+.|.|++||++....-. .....|.+.|.|+.|
T Consensus 170 ~t~~~nSESiRDV~fsp~~~--~~F~s~~dsG~lqlWDlRqp~r~~-------------------~k~~AH~GpV~c~nw 228 (839)
T KOG0269|consen 170 STFRSNSESIRDVKFSPGYG--NKFASIHDSGYLQLWDLRQPDRCE-------------------KKLTAHNGPVLCLNW 228 (839)
T ss_pred ccccccchhhhceeeccCCC--ceEEEecCCceEEEeeccCchhHH-------------------HHhhcccCceEEEee
Confidence 99999999999999999764 589999999999999998654221 223579999999999
Q ss_pred cCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccC
Q 000270 401 NANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFC 480 (1749)
Q Consensus 401 SPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~ 480 (1749)
+|++.+||+|+.|++|+||++.++.. ..+.+ ..-..+|..|.|-|..
T Consensus 229 hPnr~~lATGGRDK~vkiWd~t~~~~-------~~~~t-InTiapv~rVkWRP~~------------------------- 275 (839)
T KOG0269|consen 229 HPNREWLATGGRDKMVKIWDMTDSRA-------KPKHT-INTIAPVGRVKWRPAR------------------------- 275 (839)
T ss_pred cCCCceeeecCCCccEEEEeccCCCc-------cceeE-EeecceeeeeeeccCc-------------------------
Confidence 99999999999999999999965321 11111 1234688999999975
Q ss_pred CCEEEEEe--CCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcC-CCCEEEE
Q 000270 481 HDNIVTCS--RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL-DNRFVLA 557 (1749)
Q Consensus 481 ~~~LaSgS--~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSP-DG~~LAT 557 (1749)
...|++++ .|-.|+|||++.. .-+...+..|...++.++|.. |-..|.+
T Consensus 276 ~~hLAtcsmv~dtsV~VWDvrRP----------------------------YIP~~t~~eH~~~vt~i~W~~~d~~~l~s 327 (839)
T KOG0269|consen 276 SYHLATCSMVVDTSVHVWDVRRP----------------------------YIPYATFLEHTDSVTGIAWDSGDRINLWS 327 (839)
T ss_pred cchhhhhhccccceEEEEeeccc----------------------------cccceeeeccCccccceeccCCCceeeEe
Confidence 24677765 4778999999842 123456677888999999965 4456778
Q ss_pred EeCCCeEEEEECC
Q 000270 558 AIMDCRICVWNAA 570 (1749)
Q Consensus 558 Gs~DGtI~VWDl~ 570 (1749)
++.||+|..-.+.
T Consensus 328 ~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 328 CSKDGTVLQHLFK 340 (839)
T ss_pred ecCccHHHHhhhh
Confidence 8888877654443
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.9e-16 Score=183.51 Aligned_cols=328 Identities=27% Similarity=0.474 Sum_probs=248.6
Q ss_pred eEEEEccCCC-CEEEEEE-CCCCC-EEEEEeC-CcEEEEEECCC-CeEEEEEccCCCCeEEEEEcCCCcEEEEEeC-CCe
Q 000270 235 NIKRVRGHRN-AVYCAIF-DRSGR-YVITGSD-DRLVKIWSMET-AYCLASCRGHEGDITDLAVSSNNALVASASN-DCI 308 (1749)
Q Consensus 235 ~i~tL~GH~~-~Vt~VaF-SPDG~-~LATGS~-DGtVrIWDl~T-g~~l~tL~gHs~~VtsLafSPDg~lLASGS~-DGt 308 (1749)
.+..+.++.. .+..+.+ ++++. +++..+. |+.+.+|++.+ ...+..+..|...|.+++|+|++.++++++. |+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 179 (466)
T COG2319 100 LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT 179 (466)
T ss_pred eEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCc
Confidence 6677777554 7777777 88887 5555444 99999999998 8888999999999999999999999999886 999
Q ss_pred EEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCC
Q 000270 309 IRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 388 (1749)
Q Consensus 309 IrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~ 388 (1749)
+++|++..+..+..+.+|...|.+++|+|++. ..+++++.|+.|.+||...+...... .
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~d~~i~~wd~~~~~~~~~~-------------------~ 238 (466)
T COG2319 180 IKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG--LLIASGSSDGTIRLWDLSTGKLLRST-------------------L 238 (466)
T ss_pred eEEEEcCCCceEEeeccCCCceEEEEEcCCcc--eEEEEecCCCcEEEEECCCCcEEeee-------------------c
Confidence 99999999899999999999999999998875 24555599999999988755444311 1
Q ss_pred CCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCC
Q 000270 389 GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 468 (1749)
Q Consensus 389 ~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~ 468 (1749)
..|...+ ...|++++.++++++.|+.+++|++..... .+..+.+|...|.++.|.|.+
T Consensus 239 ~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~------------- 296 (466)
T COG2319 239 SGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--------LLRTLSGHSSSVLSVAFSPDG------------- 296 (466)
T ss_pred CCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--------EEEEEecCCccEEEEEECCCC-------------
Confidence 2334443 338999998999999999999999965321 233336888999999999855
Q ss_pred CCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEE
Q 000270 469 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 548 (1749)
Q Consensus 469 ~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVaf 548 (1749)
..+++++.|+.+.+|+..+....... ....|...+..+.|
T Consensus 297 -------------~~~~~~~~d~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~ 336 (466)
T COG2319 297 -------------KLLASGSSDGTVRLWDLETGKLLSSL---------------------------TLKGHEGPVSSLSF 336 (466)
T ss_pred -------------CEEEEeeCCCcEEEEEcCCCceEEEe---------------------------eecccCCceEEEEE
Confidence 57777999999999987753311000 02245556888888
Q ss_pred cCCCCEEEEE-eCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEE-EeCCCcEEEEeCCCCceEEEEeee--
Q 000270 549 SLDNRFVLAA-IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMS-AGYDGKTIVWDIWEGIPIRIYEIS-- 624 (1749)
Q Consensus 549 SPDG~~LATG-s~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaS-gs~DGtIrVWDl~tGk~l~tl~~~-- 624 (1749)
.+++..++.+ ..|+.+.+|++...........+.. +..+.+.+ + ..+++ +..++.+.+|+.........+...
T Consensus 337 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (466)
T COG2319 337 SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTS 413 (466)
T ss_pred CCCCCEEEEeecCCCcEEeeecCCCceeEEecCCce-EEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCCC
Confidence 4343566666 6889999999988873333333333 89999999 7 55555 789999999999888776554432
Q ss_pred ------eccCCCEEEEEcCCCeEEEEECCC
Q 000270 625 ------RFRDGASIILSDDVGQLYILNTGQ 648 (1749)
Q Consensus 625 ------~~sDG~~LAsgd~DG~I~IWdl~t 648 (1749)
...++..++.++.++.+.+|+...
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 414 RVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 233888899999999999999876
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.9e-18 Score=188.41 Aligned_cols=280 Identities=21% Similarity=0.268 Sum_probs=190.8
Q ss_pred EEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEE
Q 000270 320 ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCA 399 (1749)
Q Consensus 320 l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~La 399 (1749)
+.+|++|.+.|++++|+.||+ .|++++.|++|++|+++.......-. ... .-.-+..+.+.
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK---~lat~~~Dr~Ir~w~~~DF~~~eHr~------------~R~----nve~dhpT~V~ 139 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGK---KLATISGDRSIRLWDVRDFENKEHRC------------IRQ----NVEYDHPTRVV 139 (420)
T ss_pred hhhhhccCCceeeeEEcCCCc---eeEEEeCCceEEEEecchhhhhhhhH------------hhc----cccCCCceEEE
Confidence 346789999999999999998 99999999999999998633211100 000 01122467899
Q ss_pred EcCCCCEEEEec-CCCcEEEEeCCCCCCCCCCCCCcce---eeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCccc
Q 000270 400 FNANGTVFVTGS-SDTLARVWNACKPNTDDSDQPNHEI---DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475 (1749)
Q Consensus 400 fSPDG~~LaSGs-~DGtVrIWDl~t~~~~~s~~~~~~i---~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~ 475 (1749)
|+||.+-+++.. ....+++|-+...+.....-+...+ ..-..|.-.|..+-....+
T Consensus 140 FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-------------------- 199 (420)
T KOG2096|consen 140 FAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-------------------- 199 (420)
T ss_pred ECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCc--------------------
Confidence 999987655544 4557999988543221111111111 1122344445444444333
Q ss_pred ccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEE
Q 000270 476 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFV 555 (1749)
Q Consensus 476 ~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~L 555 (1749)
.+|++++.|..|.||++. ++. +..+......-+..+.||+|++|
T Consensus 200 ------k~imsas~dt~i~lw~lk-Gq~-----------------------------L~~idtnq~~n~~aavSP~GRFi 243 (420)
T KOG2096|consen 200 ------KYIMSASLDTKICLWDLK-GQL-----------------------------LQSIDTNQSSNYDAAVSPDGRFI 243 (420)
T ss_pred ------eEEEEecCCCcEEEEecC-Cce-----------------------------eeeeccccccccceeeCCCCcEE
Confidence 799999999999999988 332 22223333445678999999999
Q ss_pred EEEeCCCeEEEEECC---CC-----ceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCC----C---ceEEE
Q 000270 556 LAAIMDCRICVWNAA---DG-----SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE----G---IPIRI 620 (1749)
Q Consensus 556 ATGs~DGtI~VWDl~---tg-----klv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~t----G---k~l~t 620 (1749)
|+++..-.|+||.+- .| ..+..|.||...|..++|++ +...++|++.||+++|||+.- + +.+++
T Consensus 244 a~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn-~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~ 322 (420)
T KOG2096|consen 244 AVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN-SSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKE 322 (420)
T ss_pred EEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC-CcceeEEEecCCcEEEeeccceEecCCCchHhhc
Confidence 999999999999862 33 23557899999999999999 778888999999999999742 1 22222
Q ss_pred Ee------------eeeccCCCEEEEEcCCCeEEEEECCCCcccccc-------cceeeecCCCcceeEcCCCcE
Q 000270 621 YE------------ISRFRDGASIILSDDVGQLYILNTGQGESQKDA-------KYDQFFLGDYRPLVQDTYGNV 676 (1749)
Q Consensus 621 l~------------~~~~sDG~~LAsgd~DG~I~IWdl~tGe~~k~~-------~~~~fFs~D~r~Lv~d~~G~V 676 (1749)
.. ..-.|.|..||.+.. ..|.+|...+|+....+ .....|++|++.++.-..-+|
T Consensus 323 g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~v 396 (420)
T KOG2096|consen 323 GSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDRYV 396 (420)
T ss_pred CCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecceee
Confidence 21 112348888887655 37899999888776443 344789999998866554443
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.8e-18 Score=187.64 Aligned_cols=292 Identities=22% Similarity=0.292 Sum_probs=198.3
Q ss_pred ccCCCCeEEEEEcC-CCcEEEEEeCCCeEEEEECCCCc----------eEEE-----ecCCCCceEEEEeccCCCcceEE
Q 000270 282 RGHEGDITDLAVSS-NNALVASASNDCIIRVWRLPDGL----------PISV-----LRGHTAAVTAIAFSPRPGSVYQL 345 (1749)
Q Consensus 282 ~gHs~~VtsLafSP-Dg~lLASGS~DGtIrVWDl~tgk----------~l~t-----L~gHs~~VtsIaFSPdg~~~~~L 345 (1749)
+.|.+.|.+|.+.+ .|+++++|+.||.|.|||++... .+.. -.+|.-.|..+.|-|-..+ .+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG--mF 117 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG--MF 117 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc--ee
Confidence 45889999999988 79999999999999999997532 1111 1367889999999997654 78
Q ss_pred EeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCC---CCEEEEecCCCcEEEEeCC
Q 000270 346 LSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN---GTVFVTGSSDTLARVWNAC 422 (1749)
Q Consensus 346 aSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPD---G~~LaSGs~DGtVrIWDl~ 422 (1749)
.+++.|.++++||..+.+....+.+ .+.|.+-++||- ..++|+|..+-.|++.|+.
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~m---------------------e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~ 176 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFKM---------------------EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA 176 (397)
T ss_pred ecccccceEEEeecccceeeEEeec---------------------CceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence 9999999999999998876666543 345777788883 3478889999999999997
Q ss_pred CCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCC
Q 000270 423 KPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 502 (1749)
Q Consensus 423 t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k 502 (1749)
+ +....++.||.+.|.+|.|+|.. .-.|++|+.||.|++||++...
T Consensus 177 S---------Gs~sH~LsGHr~~vlaV~Wsp~~-------------------------e~vLatgsaDg~irlWDiRras 222 (397)
T KOG4283|consen 177 S---------GSFSHTLSGHRDGVLAVEWSPSS-------------------------EWVLATGSADGAIRLWDIRRAS 222 (397)
T ss_pred C---------CcceeeeccccCceEEEEeccCc-------------------------eeEEEecCCCceEEEEEeeccc
Confidence 6 45678899999999999999975 1368999999999999998531
Q ss_pred CCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEE-ec--
Q 000270 503 SHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHS-LT-- 579 (1749)
Q Consensus 503 ~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~t-L~-- 579 (1749)
.. +. .+.... .......+.-..|.+.|+.+||+.+|.++++++.|.++++|+..+|+-... +.
T Consensus 223 gc--f~------~lD~hn------~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~ 288 (397)
T KOG4283|consen 223 GC--FR------VLDQHN------TKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPI 288 (397)
T ss_pred ce--eE------Eeeccc------CccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccc
Confidence 10 00 000000 000111223456888999999999999999999999999999988753221 10
Q ss_pred CCCCCeEEEEE---cCCCCcEEEEEeCCCcEEEEeCCCCceEEEEeee--------eccCCCEEEEEcCCCeEEEEEC
Q 000270 580 GHTESTYVLDV---HPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS--------RFRDGASIILSDDVGQLYILNT 646 (1749)
Q Consensus 580 gH~~~VtsLaf---SPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~--------~~sDG~~LAsgd~DG~I~IWdl 646 (1749)
.|... ..+++ +. +...++---.|+.+.+.++-.|..++.+.++ ..++-+...+++-||.|+.|-.
T Consensus 289 ~~n~~-~~~~~~~~~~-~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 289 IHNQT-TSFAVHIQSM-DSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ccccc-ccceEEEeec-ccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 11110 01111 11 1122222233455555555555555444433 1124455556666666666654
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-18 Score=189.28 Aligned_cols=311 Identities=17% Similarity=0.249 Sum_probs=218.6
Q ss_pred eEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEc-cCCCCeEEEEEcCCCcEEEEEeCCCeEEEEE
Q 000270 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1749)
Q Consensus 235 ~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~-gHs~~VtsLafSPDg~lLASGS~DGtIrVWD 313 (1749)
+...|++|.+.|+|+.|..+++ |.+|..-|.|++|++.+.+.+..++ .|...|+.+..-|+ ..|.+-+.|+.+.+|+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 4567889999999999998886 8899999999999999999888888 67889999999987 4677889999999999
Q ss_pred CCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCC-cEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000270 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG-TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1749)
Q Consensus 314 l~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DG-tIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~ 392 (1749)
+.-+..+.. |.-.++++.|++.. +...+... .+.+++-+.............. ..........+..
T Consensus 84 ia~s~~i~i---~Si~~nslgFCrfS-----l~~~~k~~eqll~yp~rgsde~h~~D~g~~t-----qv~i~dd~~~~Kl 150 (323)
T KOG0322|consen 84 IAYSAFISI---HSIVVNSLGFCRFS-----LVKKPKNSEQLLEYPSRGSDETHKQDGGDTT-----QVQIADDSERSKL 150 (323)
T ss_pred ccCcceEEE---eeeeccccccccce-----eccCCCcchhheecCCcccchhhhhccCccc-----eeEccCchhcccc
Confidence 987655443 55667778887742 33333222 2222222211110000000000 0000111223445
Q ss_pred CceEEEEEcC-CCC--EEEEecCCCcEEEEeCCCCCC-CCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCC
Q 000270 393 HQIFCCAFNA-NGT--VFVTGSSDTLARVWNACKPNT-DDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 468 (1749)
Q Consensus 393 ~~Vt~LafSP-DG~--~LaSGs~DGtVrIWDl~t~~~-~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~ 468 (1749)
+.+.|..+.. ++. +|++|..+|.|.+||+.++.. ....+..+.......|..+|.++.|.+..
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~------------- 217 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC------------- 217 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh-------------
Confidence 6678877543 333 567888999999999977421 11122233344556799999999987643
Q ss_pred CCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEE
Q 000270 469 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 548 (1749)
Q Consensus 469 ~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVaf 548 (1749)
+.=++|+.+..+..|.+...... -.....+.-...+|..+.+
T Consensus 218 -------------~rGisgga~dkl~~~Sl~~s~gs-------------------------lq~~~e~~lknpGv~gvrI 259 (323)
T KOG0322|consen 218 -------------DRGISGGADDKLVMYSLNHSTGS-------------------------LQIRKEITLKNPGVSGVRI 259 (323)
T ss_pred -------------cCCcCCCccccceeeeeccccCc-------------------------ccccceEEecCCCccceEE
Confidence 34467777888888887642100 0011122223456888999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 000270 549 SLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1749)
Q Consensus 549 SPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl 612 (1749)
-||++.+||++.|++|+||+.+++.++..|.-|.+.|++++|+| +..++|+|+.|++|-+|++
T Consensus 260 RpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 260 RPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL 322 (323)
T ss_pred ccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence 99999999999999999999999999999999999999999999 6789999999999999986
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-19 Score=216.64 Aligned_cols=256 Identities=16% Similarity=0.309 Sum_probs=220.1
Q ss_pred CCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEE
Q 000270 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIA 334 (1749)
Q Consensus 255 G~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIa 334 (1749)
+.+++.+..+-.++||+... +-.|...|.++..-..++.+++|+.|..+-+|.+....++..|.+|..+|.+|.
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~ 77 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLT 77 (825)
T ss_pred ccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeee
Confidence 33455555566778888653 346888888888867889999999999999999987777888999999999999
Q ss_pred eccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCC
Q 000270 335 FSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDT 414 (1749)
Q Consensus 335 FSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DG 414 (1749)
|++... +|++|+.+|+|++||+..++.+.++ .+|...+..+.|+|-|.++|.|+.|+
T Consensus 78 f~~~E~---LlaagsasgtiK~wDleeAk~vrtL--------------------tgh~~~~~sv~f~P~~~~~a~gStdt 134 (825)
T KOG0267|consen 78 FDTSER---LLAAGSASGTIKVWDLEEAKIVRTL--------------------TGHLLNITSVDFHPYGEFFASGSTDT 134 (825)
T ss_pred cCcchh---hhcccccCCceeeeehhhhhhhhhh--------------------hccccCcceeeeccceEEeccccccc
Confidence 999876 8999999999999999988766655 35777899999999999999999999
Q ss_pred cEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEE
Q 000270 415 LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAI 494 (1749)
Q Consensus 415 tVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIr 494 (1749)
.+.+||++. ..+...+.+|...|.++.|+|+| .+++.++.|.+++
T Consensus 135 d~~iwD~Rk---------~Gc~~~~~s~~~vv~~l~lsP~G--------------------------r~v~~g~ed~tvk 179 (825)
T KOG0267|consen 135 DLKIWDIRK---------KGCSHTYKSHTRVVDVLRLSPDG--------------------------RWVASGGEDNTVK 179 (825)
T ss_pred cceehhhhc---------cCceeeecCCcceeEEEeecCCC--------------------------ceeeccCCcceee
Confidence 999999974 45778889999999999999998 7999999999999
Q ss_pred EEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 000270 495 IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSL 574 (1749)
Q Consensus 495 IWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgkl 574 (1749)
|||...+ .....+..|...+..+.|+|..-++++|+.|++|++||+.+.+.
T Consensus 180 i~d~~ag-----------------------------k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 180 IWDLTAG-----------------------------KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEV 230 (825)
T ss_pred eeccccc-----------------------------ccccccccccccccccccCchhhhhccCCCCceeeeeccceeEE
Confidence 9998753 34456677889999999999999999999999999999999999
Q ss_pred EEEecCCCCCeEEEEEcCCCCcEEEEEeCC
Q 000270 575 VHSLTGHTESTYVLDVHPFNPRIAMSAGYD 604 (1749)
Q Consensus 575 v~tL~gH~~~VtsLafSPdd~rlLaSgs~D 604 (1749)
+.........|.+++|+| ++..+++|..+
T Consensus 231 I~s~~~~~~~v~~~~fn~-~~~~~~~G~q~ 259 (825)
T KOG0267|consen 231 ISSGKPETDGVRSLAFNP-DGKIVLSGEQI 259 (825)
T ss_pred eeccCCccCCceeeeecC-CceeeecCchh
Confidence 988888889999999999 66777666544
|
|
| >cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-19 Score=176.11 Aligned_cols=91 Identities=12% Similarity=0.289 Sum_probs=83.9
Q ss_pred HHHHhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHH
Q 000270 1646 KLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKI 1725 (1749)
Q Consensus 1646 ~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~~s~~~~~a 1725 (1749)
.+++.+.++..+|+|..|++....||||++|++||||+||++||+++.|.++++|..||+|||.||++||+++|.++++|
T Consensus 7 ~il~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~a 86 (97)
T cd05505 7 EILSKILKYRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENGSYVLSCM 86 (97)
T ss_pred HHHHHHHhCCCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 33344445788999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 000270 1726 KRLSDLVTRTL 1736 (1749)
Q Consensus 1726 ~~l~~~~~~~l 1736 (1749)
.+|+++|.++|
T Consensus 87 ~~le~~f~~~~ 97 (97)
T cd05505 87 RKTEQCCVNLL 97 (97)
T ss_pred HHHHHHHHHhC
Confidence 99999998864
|
The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-18 Score=219.75 Aligned_cols=286 Identities=21% Similarity=0.355 Sum_probs=220.5
Q ss_pred EEEECCCCC-EEEEE----------eCCcEEEEEECC--CC----eEEEEEccCCCCeEEEEEcCCCcE----EEEEeCC
Q 000270 248 CAIFDRSGR-YVITG----------SDDRLVKIWSME--TA----YCLASCRGHEGDITDLAVSSNNAL----VASASND 306 (1749)
Q Consensus 248 ~VaFSPDG~-~LATG----------S~DGtVrIWDl~--Tg----~~l~tL~gHs~~VtsLafSPDg~l----LASGS~D 306 (1749)
.++|+|.+. +||+| +.+.++-||.+. +. +.+..+. -......|+|.+.+.. ||.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 467888886 56655 234556666553 22 2333333 3567889999986654 8889999
Q ss_pred CeEEEEECCC---C---ceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCC
Q 000270 307 CIIRVWRLPD---G---LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 380 (1749)
Q Consensus 307 GtIrVWDl~t---g---k~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~ 380 (1749)
|.|.+||... + ..+.....|.+.|.++.|++... ++||+|+.||.|.|||+...+.-... +
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~--nlLASGa~~geI~iWDlnn~~tP~~~----------~- 156 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQG--NLLASGADDGEILIWDLNKPETPFTP----------G- 156 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCC--ceeeccCCCCcEEEeccCCcCCCCCC----------C-
Confidence 9999999754 2 34566778999999999999875 48999999999999999864322111 0
Q ss_pred CCCCCCCCCCCCCceEEEEEcCC-CCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCC--CCeEEEEEcCCCcc
Q 000270 381 NMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE--NDVNYVQFSGCAVA 457 (1749)
Q Consensus 381 ~~~~~~s~~~h~~~Vt~LafSPD-G~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~--~~V~sVafSpdg~a 457 (1749)
.......|.|++|+.. ...||+++.+|.+.|||++.. +.+..+..|. ..+..|+|+|+..
T Consensus 157 -------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~---------~pii~ls~~~~~~~~S~l~WhP~~a- 219 (1049)
T KOG0307|consen 157 -------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK---------KPIIKLSDTPGRMHCSVLAWHPDHA- 219 (1049)
T ss_pred -------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCC---------CcccccccCCCccceeeeeeCCCCc-
Confidence 1234567999999874 457899999999999999753 2333444443 3577899999872
Q ss_pred cccccccCCCCCCCCcccccccCCCEEEEEeCCC---cEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcc
Q 000270 458 SRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG---SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ 534 (1749)
Q Consensus 458 s~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG---tIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~ 534 (1749)
..|++++.|. .|.+||++. ...+.+
T Consensus 220 ------------------------Tql~~As~dd~~PviqlWDlR~----------------------------assP~k 247 (1049)
T KOG0307|consen 220 ------------------------TQLLVASGDDSAPVIQLWDLRF----------------------------ASSPLK 247 (1049)
T ss_pred ------------------------eeeeeecCCCCCceeEeecccc----------------------------cCCchh
Confidence 4666666554 689999884 234567
Q ss_pred cccCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 000270 535 RILPTPRGVNMIVWSLDN-RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1749)
Q Consensus 535 ~l~~h~~~VtsVafSPDG-~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~ 613 (1749)
.+.+|..+|.++.|++.+ ++|++++.|++|.+|+..+|+.+..+......++.+.|+|-++.++++++-||.|-|+.+.
T Consensus 248 ~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 248 ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeee
Confidence 778999999999999977 8999999999999999999999999998889999999999888899999999999999986
Q ss_pred CCc
Q 000270 614 EGI 616 (1749)
Q Consensus 614 tGk 616 (1749)
.+.
T Consensus 328 ~~~ 330 (1049)
T KOG0307|consen 328 GTD 330 (1049)
T ss_pred cCC
Confidence 654
|
|
| >cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.3e-19 Score=179.37 Aligned_cols=102 Identities=21% Similarity=0.277 Sum_probs=92.4
Q ss_pred HHHHHHHHHhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCCCH
Q 000270 1641 LSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTD 1720 (1749)
Q Consensus 1641 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~~s~ 1720 (1749)
+..+..+++.+..+..+|+|..|+.....|+||++|+.||||+||++||++++|+++++|..||+|||+||++||+++|+
T Consensus 14 ~~~c~~il~~l~~~~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN~~~s~ 93 (115)
T cd05504 14 LSALEQLLVEIVKHKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYNPEHTS 93 (115)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 34444455555557889999999998899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC
Q 000270 1721 LSTKIKRLSDLVTRTLSSLKAP 1742 (1749)
Q Consensus 1721 ~~~~a~~l~~~~~~~l~~~~~~ 1742 (1749)
++++|..|+++|.++++++..|
T Consensus 94 i~~~A~~l~~~f~~~~~~~~~~ 115 (115)
T cd05504 94 VYKAGTRLQRFFIKRCRKLGLP 115 (115)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999998764
|
Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.1e-19 Score=174.36 Aligned_cols=97 Identities=15% Similarity=0.211 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHHhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCC
Q 000270 1638 NKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGR 1717 (1749)
Q Consensus 1638 ~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~ 1717 (1749)
+.|...|..+++.+. +..+|+|..|++....||||++|++||||+||++||+++.|.++++|..||+|||.||.+||++
T Consensus 2 ~~l~~~L~~~~~~~~-~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~~ 80 (99)
T cd05508 2 DQLSKLLKFALERMK-QPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNGG 80 (99)
T ss_pred hHHHHHHHHHHHHHh-CcCcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 346666777777777 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 000270 1718 NTDLSTKIKRLSDLVTRT 1735 (1749)
Q Consensus 1718 ~s~~~~~a~~l~~~~~~~ 1735 (1749)
+|.++.+|+.|.+.+...
T Consensus 81 ~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 81 DHKLTQAAKAIVKICEQE 98 (99)
T ss_pred CCHHHHHHHHHHHHHHhh
Confidence 999999999999998764
|
RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.4e-19 Score=179.68 Aligned_cols=101 Identities=15% Similarity=0.236 Sum_probs=91.0
Q ss_pred HHHHHHHHHHhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCC-C
Q 000270 1640 LLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGR-N 1718 (1749)
Q Consensus 1640 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~-~ 1718 (1749)
+...+..+++.+..+..+|+|..|+.....||||++|++||||+||++||++++|.++++|..||+|||.||++||++ +
T Consensus 6 w~~~c~~il~~l~~~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN~~~~ 85 (119)
T cd05496 6 WKKQCKELVNLMWDCEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYTPNKR 85 (119)
T ss_pred HHHHHHHHHHHHHhCCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 444455555555667899999999998889999999999999999999999999999999999999999999999985 9
Q ss_pred CHHHHHHHHHHHHHHHHHhcCC
Q 000270 1719 TDLSTKIKRLSDLVTRTLSSLK 1740 (1749)
Q Consensus 1719 s~~~~~a~~l~~~~~~~l~~~~ 1740 (1749)
+.++.+|..|+++|.++++++.
T Consensus 86 s~i~~~a~~L~~~F~~~~~~l~ 107 (119)
T cd05496 86 SRIYSMTLRLSALFEEHIKKII 107 (119)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988764
|
WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5e-17 Score=194.21 Aligned_cols=299 Identities=15% Similarity=0.245 Sum_probs=214.8
Q ss_pred EEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEE
Q 000270 277 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356 (1749)
Q Consensus 277 ~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrI 356 (1749)
+-..++||++.|.+|...|.|.+||+|+.||+|+||.+.+|.|+.++. ..+.|.||+|+|.+... .||++-... +.|
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~-vLAvA~~~~-~~i 468 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLC-VLAVAVGEC-VLI 468 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCce-eEEEEecCc-eEE
Confidence 344578999999999999999999999999999999999999999887 56689999999998643 555554444 667
Q ss_pred EEcCCCcccce-----eecCCC-----CCcccCCCCC-------CCCCCCCCCCceEEEEEcCCCCEEEEecCC---CcE
Q 000270 357 WDARYSQFSPR-----IYIPRP-----SDAVAGRNMA-------PSSSAGPQSHQIFCCAFNANGTVFVTGSSD---TLA 416 (1749)
Q Consensus 357 WDl~tg~~l~~-----l~~~~~-----~~~~~g~~~~-------~~~s~~~h~~~Vt~LafSPDG~~LaSGs~D---GtV 416 (1749)
.+..-|..+.. +....+ ...+..+... .....-.|...|..+.|+..|.+|++...+ ..|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 66554422111 111110 0000000000 011223456778999999999999997664 468
Q ss_pred EEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEE
Q 000270 417 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 496 (1749)
Q Consensus 417 rIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIW 496 (1749)
.|.++..... ...|....+.|.++.|+|.. .+|++++ ...|+||
T Consensus 549 liHQLSK~~s---------Q~PF~kskG~vq~v~FHPs~--------------------------p~lfVaT-q~~vRiY 592 (733)
T KOG0650|consen 549 LIHQLSKRKS---------QSPFRKSKGLVQRVKFHPSK--------------------------PYLFVAT-QRSVRIY 592 (733)
T ss_pred EEEecccccc---------cCchhhcCCceeEEEecCCC--------------------------ceEEEEe-ccceEEE
Confidence 8888865321 23344556789999999975 4555543 5689999
Q ss_pred ecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceE
Q 000270 497 IPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG-SLV 575 (1749)
Q Consensus 497 Dl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tg-klv 575 (1749)
|+..+. .++.+......|..++.+|.|..|++|+.|+.++.||+.-+ ++.
T Consensus 593 dL~kqe-----------------------------lvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPy 643 (733)
T KOG0650|consen 593 DLSKQE-----------------------------LVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPY 643 (733)
T ss_pred ehhHHH-----------------------------HHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchh
Confidence 987532 23444555667999999999999999999999999999754 677
Q ss_pred EEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe------CCCC---ceEEEEe------------eeeccCCCEEEE
Q 000270 576 HSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD------IWEG---IPIRIYE------------ISRFRDGASIIL 634 (1749)
Q Consensus 576 ~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWD------l~tG---k~l~tl~------------~~~~sDG~~LAs 634 (1749)
+++.-|...|++|+||+ .--++++|+.||++.|+- +-.. -++..+. .-+++.--+|++
T Consensus 644 k~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfs 722 (733)
T KOG0650|consen 644 KTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFS 722 (733)
T ss_pred HHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEe
Confidence 89999999999999999 666899999999999883 2111 1223332 235567778899
Q ss_pred EcCCCeEEEE
Q 000270 635 SDDVGQLYIL 644 (1749)
Q Consensus 635 gd~DG~I~IW 644 (1749)
++.||.|++|
T Consensus 723 AGAd~tirlf 732 (733)
T KOG0650|consen 723 AGADGTIRLF 732 (733)
T ss_pred cCCCceEEee
Confidence 9999999988
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-17 Score=199.02 Aligned_cols=264 Identities=20% Similarity=0.337 Sum_probs=189.5
Q ss_pred EEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEE--EccCCCCeEEEEEcCC-CcEEEEEeCCCeEEEE
Q 000270 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS--CRGHEGDITDLAVSSN-NALVASASNDCIIRVW 312 (1749)
Q Consensus 236 i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~t--L~gHs~~VtsLafSPD-g~lLASGS~DGtIrVW 312 (1749)
++....|.++|..+.|-|-...|++++.|.++++||+.+.+++.. +.||.+.|.+++|.+. ...|++|+.||.|.||
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 455678999999999999667899999999999999999998877 8999999999999995 5688999999999999
Q ss_pred ECCCCc--------------------eE-------EEecCCCCceEE---EEeccCCCcceEEEeecC-CCcEEEEEcCC
Q 000270 313 RLPDGL--------------------PI-------SVLRGHTAAVTA---IAFSPRPGSVYQLLSSSD-DGTCRIWDARY 361 (1749)
Q Consensus 313 Dl~tgk--------------------~l-------~tL~gHs~~Vts---IaFSPdg~~~~~LaSgS~-DGtIrIWDl~t 361 (1749)
|+.-.. +. ..-..+...|.+ +.+..|.. .||+++. |+.|+|||++.
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~---tlaSaga~D~~iKVWDLRk 249 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES---TLASAGAADSTIKVWDLRK 249 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc---eeeeccCCCcceEEEeecc
Confidence 984211 11 111233444444 44445544 7888887 99999999997
Q ss_pred CcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecC
Q 000270 362 SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG 441 (1749)
Q Consensus 362 g~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~g 441 (1749)
........- . + .............+.++.....|.+|.+.+.|+.|++|++.+.. ...+..+.+
T Consensus 250 ~~~~~r~ep-~------~--~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s-------~sP~~~~sg 313 (720)
T KOG0321|consen 250 NYTAYRQEP-R------G--SDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLS-------ISPVAEFSG 313 (720)
T ss_pred cccccccCC-C------c--ccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccC-------cCchhhccC
Confidence 765433210 0 0 00011112234568889988889998888889999999997532 222333344
Q ss_pred CCCCeEEE--EEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCC
Q 000270 442 HENDVNYV--QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVP 519 (1749)
Q Consensus 442 H~~~V~sV--afSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~ 519 (1749)
+...-..+ ..+|++ .+|++|+.|+.+++|.+.+..
T Consensus 314 ~~~~sf~vks~lSpd~--------------------------~~l~SgSsd~~ayiw~vs~~e----------------- 350 (720)
T KOG0321|consen 314 KLNSSFYVKSELSPDD--------------------------CSLLSGSSDEQAYIWVVSSPE----------------- 350 (720)
T ss_pred cccceeeeeeecCCCC--------------------------ceEeccCCCcceeeeeecCcc-----------------
Confidence 43322222 234444 799999999999999887632
Q ss_pred CCCCCCCCCCCCCcccccCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEEECCCC
Q 000270 520 PPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN-RFVLAAIMDCRICVWNAADG 572 (1749)
Q Consensus 520 ~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG-~~LATGs~DGtI~VWDl~tg 572 (1749)
.+...+.+|...|++++|.|.. .-+|+++.|.+++||++..+
T Consensus 351 -----------~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 351 -----------APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred -----------CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 2334567888899999998854 35777799999999999654
|
|
| >cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-18 Score=176.88 Aligned_cols=104 Identities=11% Similarity=0.190 Sum_probs=95.8
Q ss_pred hhHHHHHHHHHHHhhccc-ccccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhc
Q 000270 1637 RNKLLSAFAKLEQSANRV-QDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYF 1715 (1749)
Q Consensus 1637 r~kl~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN 1715 (1749)
+..+.+.+.++++.+..+ ..+++|..|++....||||++|+.||||+||++||+++.|.++++|..|++|||+||++||
T Consensus 5 ~~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~yN 84 (112)
T cd05510 5 QEEFYESLDKVLNELKTYTEHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLYN 84 (112)
T ss_pred HHHHHHHHHHHHHHHHhcCccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 456777777888878777 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-HHHHHHHHHHHHHHHHHhcCC
Q 000270 1716 GRNT-DLSTKIKRLSDLVTRTLSSLK 1740 (1749)
Q Consensus 1716 ~~~s-~~~~~a~~l~~~~~~~l~~~~ 1740 (1749)
++++ +++++|+.|++.|.+.|..++
T Consensus 85 ~~~s~~~~~~A~~l~~~~~~~~~~~~ 110 (112)
T cd05510 85 SDPSHPLRRHANFMKKKAEHLLKLIP 110 (112)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 9865 788999999999999999886
|
SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.9e-17 Score=180.66 Aligned_cols=275 Identities=19% Similarity=0.289 Sum_probs=204.3
Q ss_pred EEEECCCCCEEEEEeCCcEEEEEECCCC--------eE----EEEEc-cCCCCeEEEEEc-------CCCcEEEEEeCCC
Q 000270 248 CAIFDRSGRYVITGSDDRLVKIWSMETA--------YC----LASCR-GHEGDITDLAVS-------SNNALVASASNDC 307 (1749)
Q Consensus 248 ~VaFSPDG~~LATGS~DGtVrIWDl~Tg--------~~----l~tL~-gHs~~VtsLafS-------PDg~lLASGS~DG 307 (1749)
.+.|+|||..|++-+.|..+.+|++... .. ..+++ .....|.+.+|- |+..++|+.+.+.
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~ 133 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ 133 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence 4679999999999999999999998421 11 11111 124567777775 5778999999999
Q ss_pred eEEEEECCCCceEEEecC--CCC---ceEEEEeccCCCcceEEEeecCCCcEEEEEc-CCCcccceeecCCCCCcccCCC
Q 000270 308 IIRVWRLPDGLPISVLRG--HTA---AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA-RYSQFSPRIYIPRPSDAVAGRN 381 (1749)
Q Consensus 308 tIrVWDl~tgk~l~tL~g--Hs~---~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl-~tg~~l~~l~~~~~~~~~~g~~ 381 (1749)
-|.+||.-+|+..+.+.+ |.. ...+++|+|||. +|++ +....|++||+ +.|.........
T Consensus 134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe---qlfa-GykrcirvFdt~RpGr~c~vy~t~---------- 199 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE---QLFA-GYKRCIRVFDTSRPGRDCPVYTTV---------- 199 (406)
T ss_pred ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC---eEee-cccceEEEeeccCCCCCCcchhhh----------
Confidence 999999999998877754 333 346899999997 6654 56678999999 555543332110
Q ss_pred CCCCCCCCCCCCceEEEEEcC-CCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCccccc
Q 000270 382 MAPSSSAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 460 (1749)
Q Consensus 382 ~~~~~s~~~h~~~Vt~LafSP-DG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~ 460 (1749)
.....+..+.|.|++|+| +...+++|+....+-||.-.. ..++..+-+|.+.|+.++|.++|
T Consensus 200 ---~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~---------~~pl~llggh~gGvThL~~~edG----- 262 (406)
T KOG2919|consen 200 ---TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG---------RRPLQLLGGHGGGVTHLQWCEDG----- 262 (406)
T ss_pred ---hcccccccceeeeeeccCCCCcceeeecccceeeeEecCC---------CCceeeecccCCCeeeEEeccCc-----
Confidence 001234567789999999 456999999999888887654 44677788999999999999998
Q ss_pred ccccCCCCCCCCcccccccCCCEEEEEeC-CCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCC
Q 000270 461 SLADSSKEDSTPKFKNSWFCHDNIVTCSR-DGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 539 (1749)
Q Consensus 461 s~~~~~~~~~~~~~~~s~~~~~~LaSgS~-DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h 539 (1749)
+.|++|+. |..|..||++..+ .++..+..|
T Consensus 263 ---------------------n~lfsGaRk~dkIl~WDiR~~~----------------------------~pv~~L~rh 293 (406)
T KOG2919|consen 263 ---------------------NKLFSGARKDDKILCWDIRYSR----------------------------DPVYALERH 293 (406)
T ss_pred ---------------------CeecccccCCCeEEEEeehhcc----------------------------chhhhhhhh
Confidence 67787775 7789999998522 122222223
Q ss_pred CC---CeeEEEEcCCCCEEEEEeCCCeEEEEECCC-CceEEEecCCCCCeEEEEEcCCCCcEEEEEeC
Q 000270 540 PR---GVNMIVWSLDNRFVLAAIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGY 603 (1749)
Q Consensus 540 ~~---~VtsVafSPDG~~LATGs~DGtI~VWDl~t-gklv~tL~gH~~~VtsLafSPdd~rlLaSgs~ 603 (1749)
.. .-......|+|++||+|+.||.|++||+.+ |..+..+..|...|+.++++|. -.++++++.
T Consensus 294 v~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~-mpilatssG 360 (406)
T KOG2919|consen 294 VGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPI-MPILATSSG 360 (406)
T ss_pred ccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcc-cceeeeccC
Confidence 22 122355679999999999999999999988 7888999999999999999994 456666654
|
|
| >cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-18 Score=174.81 Aligned_cols=99 Identities=16% Similarity=0.222 Sum_probs=89.7
Q ss_pred hhHHHHHHHHHHHhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcC
Q 000270 1637 RNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFG 1716 (1749)
Q Consensus 1637 r~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~ 1716 (1749)
+..|+.++. .+..+..+++|..|++....|+||++|+.||||+||++||++++|+++++|..||+|||+||.+||+
T Consensus 5 ~~~~~~il~----~l~~~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~ 80 (104)
T cd05507 5 KKAILLVYR----TLASHRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNS 80 (104)
T ss_pred HHHHHHHHH----HHHcCCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 444555544 4456889999999999888999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcC
Q 000270 1717 RNTDLSTKIKRLSDLVTRTLSSL 1739 (1749)
Q Consensus 1717 ~~s~~~~~a~~l~~~~~~~l~~~ 1739 (1749)
++++++.+|+.|++.+.+.|..+
T Consensus 81 ~~s~v~~~A~~l~~~~~~~~~~~ 103 (104)
T cd05507 81 SDHDVYLMAVEMQREVMSQIQQL 103 (104)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999998754
|
In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-18 Score=175.95 Aligned_cols=103 Identities=15% Similarity=0.282 Sum_probs=91.0
Q ss_pred chhhhHHHHHHHHHHHhhcccccccccccccccc--cCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhh
Q 000270 1634 DDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNA 1711 (1749)
Q Consensus 1634 pe~r~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~ 1711 (1749)
++.+..++.++.+|.. .+..+|+|..|+... ..||||++|+.||||+||++||+++.|.++.+|..||++||.||
T Consensus 2 ~~l~~~~~~il~~l~~---~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na 78 (108)
T cd05495 2 EELRQALMPTLEKLYK---QDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNA 78 (108)
T ss_pred HHHHHHHHHHHHHHHH---cCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 3456666666666633 238899999998865 68999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHhcC
Q 000270 1712 ESYFGRNTDLSTKIKRLSDLVTRTLSSL 1739 (1749)
Q Consensus 1712 ~~fN~~~s~~~~~a~~l~~~~~~~l~~~ 1739 (1749)
++||+++|.++++|..|+++|.+.|+.+
T Consensus 79 ~~yN~~~s~i~~~a~~l~~~F~~~~~~~ 106 (108)
T cd05495 79 WLYNRKTSRVYKYCTKLAEVFEQEIDPV 106 (108)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998753
|
Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.3e-17 Score=183.47 Aligned_cols=312 Identities=18% Similarity=0.274 Sum_probs=220.4
Q ss_pred EEccCCCCEEEEEECC-----CCCEEEEEeCCcEEEEEECCCC---eEEEEEc--cCCCCeEEEEEcCC----CcEEEEE
Q 000270 238 RVRGHRNAVYCAIFDR-----SGRYVITGSDDRLVKIWSMETA---YCLASCR--GHEGDITDLAVSSN----NALVASA 303 (1749)
Q Consensus 238 tL~GH~~~Vt~VaFSP-----DG~~LATGS~DGtVrIWDl~Tg---~~l~tL~--gHs~~VtsLafSPD----g~lLASG 303 (1749)
...+|..+|+.++|.+ .-+.+||++. ..|.||..... ..++++. .|......++|+-+ +-+||+|
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3468999999999985 2356777765 47889987643 3334332 37788889999864 3489999
Q ss_pred eCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCC
Q 000270 304 SNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMA 383 (1749)
Q Consensus 304 S~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~ 383 (1749)
+.-|.|+|.|+.++++...+.+|...|+.|.|.|+.. ++|++++.|.+|++|++.+..++..+-
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~--qlvls~SkD~svRlwnI~~~~Cv~VfG-------------- 175 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRP--QLVLSASKDHSVRLWNIQTDVCVAVFG-------------- 175 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCCC--cEEEEecCCceEEEEeccCCeEEEEec--------------
Confidence 9999999999999999999999999999999999864 589999999999999999998887662
Q ss_pred CCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCC------------CCC----Ccc---eeeecCCCC
Q 000270 384 PSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDS------------DQP----NHE---IDVLSGHEN 444 (1749)
Q Consensus 384 ~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s------------~~~----~~~---i~~l~gH~~ 444 (1749)
...+|.+.|.++.|+++|.+|++++.|..|++|++........ ..+ ... ..+..-|.+
T Consensus 176 ---G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrn 252 (385)
T KOG1034|consen 176 ---GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRN 252 (385)
T ss_pred ---ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccc
Confidence 2367899999999999999999999999999999964221000 000 000 001122333
Q ss_pred CeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCC
Q 000270 445 DVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMP 524 (1749)
Q Consensus 445 ~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~ 524 (1749)
.|.|+.|- ++++++-|-++.|..|..-.-. ..++ .+.++
T Consensus 253 yVDCvrw~----------------------------gd~ilSkscenaI~~w~pgkl~---------e~~~-~vkp~--- 291 (385)
T KOG1034|consen 253 YVDCVRWF----------------------------GDFILSKSCENAIVCWKPGKLE---------ESIH-NVKPP--- 291 (385)
T ss_pred hHHHHHHH----------------------------hhheeecccCceEEEEecchhh---------hhhh-ccCCC---
Confidence 33333332 3789999999999999763100 0000 00000
Q ss_pred CCCCCCCCcccccCCCCCeeEE--EEcCCCCEEEEEeCCCeEEEEECCCCceEE--EecC--CCCCeEEEEEcCCCCcEE
Q 000270 525 PQPPRGGPRQRILPTPRGVNMI--VWSLDNRFVLAAIMDCRICVWNAADGSLVH--SLTG--HTESTYVLDVHPFNPRIA 598 (1749)
Q Consensus 525 ~~~~~g~~i~~l~~h~~~VtsV--afSPDG~~LATGs~DGtI~VWDl~tgklv~--tL~g--H~~~VtsLafSPdd~rlL 598 (1749)
........++.-....|+-+ +|.|-++.||.|...|.|++||+....+.. ++.. ....|...+|+. ++.+|
T Consensus 292 --es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~-dgs~l 368 (385)
T KOG1034|consen 292 --ESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSR-DGSIL 368 (385)
T ss_pred --ccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecc-cCcEE
Confidence 00011122333334445555 556778999999999999999998766532 3322 244688999999 77888
Q ss_pred EEEeCCCcEEEEeCC
Q 000270 599 MSAGYDGKTIVWDIW 613 (1749)
Q Consensus 599 aSgs~DGtIrVWDl~ 613 (1749)
+....|++|.-||..
T Consensus 369 v~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 369 VLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEeCCCcEEEEEee
Confidence 889999999999853
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-17 Score=188.41 Aligned_cols=268 Identities=17% Similarity=0.280 Sum_probs=198.8
Q ss_pred eEEEEccCCCCEEEEEECCCC--CEEEEEeCCcEEEEEECC----------------CCeEEEEEccCCCCeEEEEEcCC
Q 000270 235 NIKRVRGHRNAVYCAIFDRSG--RYVITGSDDRLVKIWSME----------------TAYCLASCRGHEGDITDLAVSSN 296 (1749)
Q Consensus 235 ~i~tL~GH~~~Vt~VaFSPDG--~~LATGS~DGtVrIWDl~----------------Tg~~l~tL~gHs~~VtsLafSPD 296 (1749)
.-...-+|.+.|+.+..++-| .+.|+=+..|.|+||++. ..+.+.++.+|...=+.|+|||-
T Consensus 143 ~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~ 222 (440)
T KOG0302|consen 143 IEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPI 222 (440)
T ss_pred ccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccc
Confidence 334456788889888888865 455666789999999984 23567888999999999999992
Q ss_pred -CcEEEEEeCCCeEEEEECCCCceE---EEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCC
Q 000270 297 -NALVASASNDCIIRVWRLPDGLPI---SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR 372 (1749)
Q Consensus 297 -g~lLASGS~DGtIrVWDl~tgk~l---~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~ 372 (1749)
...|++|..-+.|++|...+|.-. ..+.+|+..|-.++|+|...+ .|++|+.||+|+|||++.+.....+..
T Consensus 223 ~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~--vfaScS~DgsIrIWDiRs~~~~~~~~~-- 298 (440)
T KOG0302|consen 223 KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG--VFASCSCDGSIRIWDIRSGPKKAAVST-- 298 (440)
T ss_pred cccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc--eEEeeecCceEEEEEecCCCccceeEe--
Confidence 235788888899999998887432 245679999999999998763 899999999999999998854444432
Q ss_pred CCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEc
Q 000270 373 PSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 452 (1749)
Q Consensus 373 ~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafS 452 (1749)
..|...|+.|.|+..-.+||+|+.||+++|||++.- +....+..+.-|..+|++|.|+
T Consensus 299 ----------------kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~------~~~~pVA~fk~Hk~pItsieW~ 356 (440)
T KOG0302|consen 299 ----------------KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQF------KSGQPVATFKYHKAPITSIEWH 356 (440)
T ss_pred ----------------eccCCceeeEEccCCcceeeecCCCceEEEEEhhhc------cCCCcceeEEeccCCeeEEEec
Confidence 467889999999998889999999999999999763 3457788999999999999999
Q ss_pred CCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCC
Q 000270 453 GCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGP 532 (1749)
Q Consensus 453 pdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~ 532 (1749)
|.. ...|++++.|..|.|||+....-........... ...-+
T Consensus 357 p~e-------------------------~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~-------------L~dlP 398 (440)
T KOG0302|consen 357 PHE-------------------------DSVIAASGEDNQITIWDLSVEADEEEIDQEAAEG-------------LQDLP 398 (440)
T ss_pred ccc-------------------------CceEEeccCCCcEEEEEeeccCChhhhccccccc-------------hhcCC
Confidence 865 2589999999999999987533211100000000 00111
Q ss_pred cccccCC--CCCeeEEEEcCCC-CEEEEEeCCCeEEEE
Q 000270 533 RQRILPT--PRGVNMIVWSLDN-RFVLAAIMDCRICVW 567 (1749)
Q Consensus 533 i~~l~~h--~~~VtsVafSPDG-~~LATGs~DGtI~VW 567 (1749)
.+-+.-| +..|.-+.|++.- .+|++.+.|| +.||
T Consensus 399 pQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 399 PQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred ceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 1222233 3457888898864 4677777777 3444
|
|
| >cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-18 Score=173.18 Aligned_cols=100 Identities=20% Similarity=0.381 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCCC
Q 000270 1640 LLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNT 1719 (1749)
Q Consensus 1640 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~~s 1719 (1749)
++..+..++..+..+..+++|..|++....|+||++|++||||+||++||++++|+++++|..||++||+||++||++++
T Consensus 2 ~~~~~~~il~~l~~~~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s 81 (101)
T cd05509 2 LYTQLKKVLDSLKNHKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPDT 81 (101)
T ss_pred hHHHHHHHHHHHHhCCCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 45667777777778899999999999989999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 000270 1720 DLSTKIKRLSDLVTRTLSSL 1739 (1749)
Q Consensus 1720 ~~~~~a~~l~~~~~~~l~~~ 1739 (1749)
.++++|..|+++|.++|+++
T Consensus 82 ~~~~~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 82 EYYKCANKLEKFFWKKLKEL 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999875
|
Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5e-17 Score=185.29 Aligned_cols=302 Identities=15% Similarity=0.238 Sum_probs=216.3
Q ss_pred EEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCC------CeEEEEEc-cCCCCeEEEEEcCCCcEEEEEeCCCe
Q 000270 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET------AYCLASCR-GHEGDITDLAVSSNNALVASASNDCI 308 (1749)
Q Consensus 236 i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~T------g~~l~tL~-gHs~~VtsLafSPDg~lLASGS~DGt 308 (1749)
.+.+.+|.+.|+++.|+.+|++||+|++|..++||++.. .+.+.... .|...|.||+|...++.|.+|+.+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 456889999999999999999999999999999999853 34444333 36689999999999999999999999
Q ss_pred EEEEECCCCceEEEecC--CCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCC
Q 000270 309 IRVWRLPDGLPISVLRG--HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1749)
Q Consensus 309 IrVWDl~tgk~l~tL~g--Hs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~ 386 (1749)
|.+.|+.+.+.+.++.. ..+.|+.+..+|..+ .|++.+.+|.|.|||++.......+.++
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN---~~~~~t~~~~V~~~D~Rd~~~~~~~~~~--------------- 190 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDN---TLIVVTRAKLVSFIDNRDRQNPISLVLP--------------- 190 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCc---eEEEEecCceEEEEeccCCCCCCceeee---------------
Confidence 99999999988877752 335899999999866 8999999999999999876532222221
Q ss_pred CCCCCCCceEEEEEcCC-CCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCC---CCCeEEEEEcCCCccccccc
Q 000270 387 SAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH---ENDVNYVQFSGCAVASRFSL 462 (1749)
Q Consensus 387 s~~~h~~~Vt~LafSPD-G~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH---~~~V~sVafSpdg~as~~s~ 462 (1749)
.........+.|+|. -.+|++.+..+-+.+||++..... ......+.+. ...-..+.|+|.|
T Consensus 191 --AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~-----~~~~~~~~~L~~~~~~~M~~~~~~~G------- 256 (609)
T KOG4227|consen 191 --ANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP-----VYQRSMFKGLPQENTEWMGSLWSPSG------- 256 (609)
T ss_pred --cCCCccceeeeecCCCceeEEeccccCCCCceeeccccch-----HHhhhccccCcccchhhhheeeCCCC-------
Confidence 122345678899995 468888999999999999764311 1011111111 1223567788877
Q ss_pred ccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCC
Q 000270 463 ADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRG 542 (1749)
Q Consensus 463 ~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~ 542 (1749)
+.|++.-....-.+||+-+.++....... .+.+ ......
T Consensus 257 -------------------~Q~msiRR~~~P~~~D~~S~R~~V~k~D~----------------N~~G------Y~N~~T 295 (609)
T KOG4227|consen 257 -------------------NQFMSIRRGKCPLYFDFISQRCFVLKSDH----------------NPNG------YCNIKT 295 (609)
T ss_pred -------------------CeehhhhccCCCEEeeeecccceeEeccC----------------CCCc------ceeeee
Confidence 45555444444556666653322110000 0000 112234
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEECCC----------C-------------ceEEEecCCCCCeEEEEEcCCCCcEEE
Q 000270 543 VNMIVWSLDNRFVLAAIMDCRICVWNAAD----------G-------------SLVHSLTGHTESTYVLDVHPFNPRIAM 599 (1749)
Q Consensus 543 VtsVafSPDG~~LATGs~DGtI~VWDl~t----------g-------------klv~tL~gH~~~VtsLafSPdd~rlLa 599 (1749)
+.+++|--|- .|++|+.+-.|++|.+.. | +.+.+|.||..-+..|.|+| ...+|+
T Consensus 296 ~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~-H~~~l~ 373 (609)
T KOG4227|consen 296 IKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQ-HNNLLV 373 (609)
T ss_pred eeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecC-CcceEe
Confidence 6778886554 599999999999998742 1 23457889999999999999 678899
Q ss_pred EEeCCCcEEEEeC
Q 000270 600 SAGYDGKTIVWDI 612 (1749)
Q Consensus 600 Sgs~DGtIrVWDl 612 (1749)
+.|-...++||.-
T Consensus 374 SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 374 SSGVENSFKLWSD 386 (609)
T ss_pred ccchhhheecccc
Confidence 9999999999975
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.6e-17 Score=191.10 Aligned_cols=241 Identities=20% Similarity=0.289 Sum_probs=184.3
Q ss_pred CCCEEEEEeCCcEEEEEECCCC---eEEE------------------EEccCCCCeEEEEEcCC-CcEEEEEeCCCeEEE
Q 000270 254 SGRYVITGSDDRLVKIWSMETA---YCLA------------------SCRGHEGDITDLAVSSN-NALVASASNDCIIRV 311 (1749)
Q Consensus 254 DG~~LATGS~DGtVrIWDl~Tg---~~l~------------------tL~gHs~~VtsLafSPD-g~lLASGS~DGtIrV 311 (1749)
.|+|+|.|+.|..|.|||+.-- .... .-.+|+..|.+|+|+.. ...||+||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 4789999999999999998521 0111 12369999999999874 568999999999999
Q ss_pred EECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCC
Q 000270 312 WRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQ 391 (1749)
Q Consensus 312 WDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h 391 (1749)
||+.+|++..++..|.+.|.++.|+|... .+|++|+.|++|.+.|.+........ -..
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p--~~LLsGs~D~~V~l~D~R~~~~s~~~--------------------wk~ 328 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEP--SVLLSGSYDGTVALKDCRDPSNSGKE--------------------WKF 328 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCc--eEEEeccccceEEeeeccCccccCce--------------------EEe
Confidence 99999999999999999999999999865 48999999999999999852221111 012
Q ss_pred CCceEEEEEcCCC-CEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCC
Q 000270 392 SHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDS 470 (1749)
Q Consensus 392 ~~~Vt~LafSPDG-~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~ 470 (1749)
.+.|-.++|.|.. ..++++..||+|+-+|++. ++.++.++.+|.+.|.+|++++..
T Consensus 329 ~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~--------~~~~vwt~~AHd~~ISgl~~n~~~--------------- 385 (463)
T KOG0270|consen 329 DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRN--------PGKPVWTLKAHDDEISGLSVNIQT--------------- 385 (463)
T ss_pred ccceEEEEecCCCceeEEEecCCceEEeeecCC--------CCCceeEEEeccCCcceEEecCCC---------------
Confidence 4568899999865 4677888999999999985 357889999999999999998754
Q ss_pred CCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcC
Q 000270 471 TPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL 550 (1749)
Q Consensus 471 ~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSP 550 (1749)
+.++++++.|+.|++|++....... ...-...-+...|+++.|
T Consensus 386 ----------p~~l~t~s~d~~Vklw~~~~~~~~~---------------------------v~~~~~~~~rl~c~~~~~ 428 (463)
T KOG0270|consen 386 ----------PGLLSTASTDKVVKLWKFDVDSPKS---------------------------VKEHSFKLGRLHCFALDP 428 (463)
T ss_pred ----------CcceeeccccceEEEEeecCCCCcc---------------------------cccccccccceeecccCC
Confidence 4789999999999999987422100 000000011255667777
Q ss_pred CCC-EEEEEeCCCeEEEEECCCCceEE
Q 000270 551 DNR-FVLAAIMDCRICVWNAADGSLVH 576 (1749)
Q Consensus 551 DG~-~LATGs~DGtI~VWDl~tgklv~ 576 (1749)
+-. ++|.|+..+.++|||+.+...+.
T Consensus 429 ~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 429 DVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred CcceEEEecCccceEEEeecccChhHH
Confidence 654 56778888899999998776543
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-17 Score=188.16 Aligned_cols=228 Identities=18% Similarity=0.322 Sum_probs=176.5
Q ss_pred cCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCC
Q 000270 324 RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN 403 (1749)
Q Consensus 324 ~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPD 403 (1749)
.+|.+.++.+.-++-++.. +.++=+..|.|.||++...- ..+ ..+..........+.....+|...-+.|+|||-
T Consensus 148 i~h~g~~NRvr~~~~~~~~-~~aswse~G~V~Vw~l~~~l--~~l--~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~ 222 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEV-LCASWSENGRVQVWDLAPHL--NAL--SEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPI 222 (440)
T ss_pred cccccccceeeecccCCcc-eeeeecccCcEEEEEchhhh--hhh--cCccccccccccCceEEecccCccceeeecccc
Confidence 4578888888888876533 67788899999999986421 111 111111112334455566788888999999993
Q ss_pred C-CEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCC
Q 000270 404 G-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHD 482 (1749)
Q Consensus 404 G-~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~ 482 (1749)
. ..|++|..-+.|++|...++.... -...+.+|+..|..++|+|.. ..
T Consensus 223 ~~g~LlsGDc~~~I~lw~~~~g~W~v------d~~Pf~gH~~SVEDLqWSptE-------------------------~~ 271 (440)
T KOG0302|consen 223 KTGRLLSGDCVKGIHLWEPSTGSWKV------DQRPFTGHTKSVEDLQWSPTE-------------------------DG 271 (440)
T ss_pred cccccccCccccceEeeeeccCceee------cCccccccccchhhhccCCcc-------------------------Cc
Confidence 2 258888888999999987754321 123467899999999999976 36
Q ss_pred EEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCC
Q 000270 483 NIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC 562 (1749)
Q Consensus 483 ~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DG 562 (1749)
.|++||.||+|+|||++.+.. ........|...|+.|.|+.+-.+||+|+.||
T Consensus 272 vfaScS~DgsIrIWDiRs~~~---------------------------~~~~~~kAh~sDVNVISWnr~~~lLasG~DdG 324 (440)
T KOG0302|consen 272 VFASCSCDGSIRIWDIRSGPK---------------------------KAAVSTKAHNSDVNVISWNRREPLLASGGDDG 324 (440)
T ss_pred eEEeeecCceEEEEEecCCCc---------------------------cceeEeeccCCceeeEEccCCcceeeecCCCc
Confidence 899999999999999997431 11122367888999999999989999999999
Q ss_pred eEEEEECCC---CceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 000270 563 RICVWNAAD---GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1749)
Q Consensus 563 tI~VWDl~t---gklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~t 614 (1749)
+++|||++. ++++..|+-|..+|++|.|+|.+...|+++|.|..|.|||+..
T Consensus 325 t~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 325 TLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 999999964 6789999999999999999998889999999999999999854
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.7e-17 Score=180.12 Aligned_cols=287 Identities=16% Similarity=0.193 Sum_probs=199.2
Q ss_pred eEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccce
Q 000270 288 ITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPR 367 (1749)
Q Consensus 288 VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~ 367 (1749)
..|+.|++.|.+||+|+.||.|.|||+.|...-..+.+|..+|++++|+++|. .|++++.|..|.+||+..|.++.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr---~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGR---KLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCC---EeeeecCCceeEEEeccCCCceeE
Confidence 78999999999999999999999999999888888999999999999999997 999999999999999999998888
Q ss_pred eecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCC-EEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeec--CC-C
Q 000270 368 IYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT-VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS--GH-E 443 (1749)
Q Consensus 368 l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~-~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~--gH-~ 443 (1749)
+.+ ..+|+.+.|+|... .+++.-.+..-.+.++..+. +.+.... +. .
T Consensus 103 irf---------------------~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--------h~~Lp~d~d~dln 153 (405)
T KOG1273|consen 103 IRF---------------------DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--------HSVLPKDDDGDLN 153 (405)
T ss_pred EEc---------------------cCccceeeeccccCCeEEEEEecCCcEEEEecCCc--------eeeccCCCccccc
Confidence 764 44588899998543 33333233333444442111 0000000 00 0
Q ss_pred CCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCC
Q 000270 444 NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPM 523 (1749)
Q Consensus 444 ~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~ 523 (1749)
....+..|.+. +++|++|...|.+.+++..+.++..
T Consensus 154 ~sas~~~fdr~--------------------------g~yIitGtsKGkllv~~a~t~e~va------------------ 189 (405)
T KOG1273|consen 154 SSASHGVFDRR--------------------------GKYIITGTSKGKLLVYDAETLECVA------------------ 189 (405)
T ss_pred cccccccccCC--------------------------CCEEEEecCcceEEEEecchheeee------------------
Confidence 00011123332 4899999999999999998744221
Q ss_pred CCCCCCCCCcccccCC-CCCeeEEEEcCCCCEEEEEeCCCeEEEEECCC-------Cc--eEEEecC--CCCCeEEEEEc
Q 000270 524 PPQPPRGGPRQRILPT-PRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD-------GS--LVHSLTG--HTESTYVLDVH 591 (1749)
Q Consensus 524 ~~~~~~g~~i~~l~~h-~~~VtsVafSPDG~~LATGs~DGtI~VWDl~t-------gk--lv~tL~g--H~~~VtsLafS 591 (1749)
.+... ...|..+-|+..|++|+.-+.|..|+.|++.. ++ +.+.++. ....=..++|+
T Consensus 190 -----------s~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs 258 (405)
T KOG1273|consen 190 -----------SFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFS 258 (405)
T ss_pred -----------eeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeec
Confidence 11111 24688899999999999999999999999862 11 1122221 11122567888
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeee---------ccCCCEEEEEcCCCeEEEEECCCCcccccccceeeec
Q 000270 592 PFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISR---------FRDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFL 662 (1749)
Q Consensus 592 Pdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~~---------~sDG~~LAsgd~DG~I~IWdl~tGe~~k~~~~~~fFs 662 (1749)
.++..++++...-..++||.-..|.+++.+.+.. .+--..|++- ..|.|+||...+-+. =-+|.
T Consensus 259 ~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~en------wsafA 331 (405)
T KOG1273|consen 259 GDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVEN------WSAFA 331 (405)
T ss_pred CCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecccc------hhhcC
Confidence 8444444444456789999999999999998642 2233344444 779999999744322 23789
Q ss_pred CCCcce
Q 000270 663 GDYRPL 668 (1749)
Q Consensus 663 ~D~r~L 668 (1749)
|||+.|
T Consensus 332 PdFqel 337 (405)
T KOG1273|consen 332 PDFQEL 337 (405)
T ss_pred chHHHH
Confidence 999887
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-16 Score=175.05 Aligned_cols=269 Identities=21% Similarity=0.351 Sum_probs=204.9
Q ss_pred CcEEEEEECCCCe--E-EEEEccCCCCeEEEEEcC-CCcEEEEEeCC-------CeEEEEECCCC---------ceEEEe
Q 000270 264 DRLVKIWSMETAY--C-LASCRGHEGDITDLAVSS-NNALVASASND-------CIIRVWRLPDG---------LPISVL 323 (1749)
Q Consensus 264 DGtVrIWDl~Tg~--~-l~tL~gHs~~VtsLafSP-Dg~lLASGS~D-------GtIrVWDl~tg---------k~l~tL 323 (1749)
|+.|.+..+..+. + -+.|..|.+.|..|+-+| +.++|+++..+ -.+.||.+... +++..|
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 7788888876542 2 245777899999999999 56677777553 24789988542 345555
Q ss_pred c-CCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCccc-ceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEc
Q 000270 324 R-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS-PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN 401 (1749)
Q Consensus 324 ~-gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l-~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafS 401 (1749)
. .+-+.|.||.|.|++. .|++-. |..|.+|++..+..+ ..+.. .....+....++-+|+
T Consensus 119 dteavg~i~cvew~Pns~---klasm~-dn~i~l~~l~ess~~vaev~s---------------s~s~e~~~~ftsg~Ws 179 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSD---KLASMD-DNNIVLWSLDESSKIVAEVLS---------------SESAEMRHSFTSGAWS 179 (370)
T ss_pred CHHHhCceeeEEEcCCCC---eeEEec-cCceEEEEcccCcchheeecc---------------cccccccceecccccC
Confidence 4 4567999999999876 566544 788999999877653 22211 0112256668888999
Q ss_pred C--CCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCccccccc
Q 000270 402 A--NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWF 479 (1749)
Q Consensus 402 P--DG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~ 479 (1749)
| +|..+++. .|+++..||+++.+. ....-.+|...|..+.|.|+.
T Consensus 180 pHHdgnqv~tt-~d~tl~~~D~RT~~~--------~~sI~dAHgq~vrdlDfNpnk------------------------ 226 (370)
T KOG1007|consen 180 PHHDGNQVATT-SDSTLQFWDLRTMKK--------NNSIEDAHGQRVRDLDFNPNK------------------------ 226 (370)
T ss_pred CCCccceEEEe-CCCcEEEEEccchhh--------hcchhhhhcceeeeccCCCCc------------------------
Confidence 9 78888876 489999999986432 233446788899999999976
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCC-CCEEEEE
Q 000270 480 CHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD-NRFVLAA 558 (1749)
Q Consensus 480 ~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPD-G~~LATG 558 (1749)
..+|++|+.||.|+|||.+.. ..++..+.+|...|.+|.|.|. .++|++|
T Consensus 227 -q~~lvt~gDdgyvriWD~R~t----------------------------k~pv~el~~HsHWvW~VRfn~~hdqLiLs~ 277 (370)
T KOG1007|consen 227 -QHILVTCGDDGYVRIWDTRKT----------------------------KFPVQELPGHSHWVWAVRFNPEHDQLILSG 277 (370)
T ss_pred -eEEEEEcCCCccEEEEeccCC----------------------------CccccccCCCceEEEEEEecCccceEEEec
Confidence 258999999999999999852 3466778899999999999985 4688899
Q ss_pred eCCCeEEEEECCC-----------------------------CceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 000270 559 IMDCRICVWNAAD-----------------------------GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIV 609 (1749)
Q Consensus 559 s~DGtI~VWDl~t-----------------------------gklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrV 609 (1749)
+.|..|.+|...+ ...+.++..|.+.|++++|+..++.++|+-++||.+.|
T Consensus 278 ~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 278 GSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred CCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 9999999997532 11344677899999999999999999999999999998
Q ss_pred EeCC
Q 000270 610 WDIW 613 (1749)
Q Consensus 610 WDl~ 613 (1749)
=.+.
T Consensus 358 s~V~ 361 (370)
T KOG1007|consen 358 SSVP 361 (370)
T ss_pred ecCC
Confidence 7664
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=187.58 Aligned_cols=261 Identities=15% Similarity=0.209 Sum_probs=203.9
Q ss_pred CEEEEEECCCCC-EEEEEeCCcEEEEEECCC--CeE--EEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCce
Q 000270 245 AVYCAIFDRSGR-YVITGSDDRLVKIWSMET--AYC--LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLP 319 (1749)
Q Consensus 245 ~Vt~VaFSPDG~-~LATGS~DGtVrIWDl~T--g~~--l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~ 319 (1749)
.|.++.|+.... .+|+.+.|..|++|.-.. ++. +..+.+ ..-.|++......++++|+..+.|+|||++...+
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g--d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~ 113 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG--DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLI 113 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeecccc--chHHHHhhhhcceeeeccCcCceeeehhhHHHHH
Confidence 488999988764 233445688999997542 222 222333 2445565555668999999999999999998888
Q ss_pred EEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEE
Q 000270 320 ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCA 399 (1749)
Q Consensus 320 l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~La 399 (1749)
.+.+++|...|+++.+..... +||+++..|-|.|..+.++.....+.. +....|.-+.
T Consensus 114 hr~lkdh~stvt~v~YN~~De---yiAsvs~gGdiiih~~~t~~~tt~f~~-------------------~sgqsvRll~ 171 (673)
T KOG4378|consen 114 HRFLKDHQSTVTYVDYNNTDE---YIASVSDGGDIIIHGTKTKQKTTTFTI-------------------DSGQSVRLLR 171 (673)
T ss_pred hhhccCCcceeEEEEecCCcc---eeEEeccCCcEEEEecccCccccceec-------------------CCCCeEEEee
Confidence 889999999999999998766 999999999999999988876555432 2234467899
Q ss_pred EcCCCC-EEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccc
Q 000270 400 FNANGT-VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1749)
Q Consensus 400 fSPDG~-~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~ 478 (1749)
|++..+ +|.+++.+|.|.+||+... .........|..+...|+|+|..
T Consensus 172 ys~skr~lL~~asd~G~VtlwDv~g~--------sp~~~~~~~HsAP~~gicfspsn----------------------- 220 (673)
T KOG4378|consen 172 YSPSKRFLLSIASDKGAVTLWDVQGM--------SPIFHASEAHSAPCRGICFSPSN----------------------- 220 (673)
T ss_pred cccccceeeEeeccCCeEEEEeccCC--------CcccchhhhccCCcCcceecCCc-----------------------
Confidence 999776 5667899999999999542 22344567899999999999975
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEE
Q 000270 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA 558 (1749)
Q Consensus 479 ~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATG 558 (1749)
..+|++.+.|..|.+||+.+.+... ...-..+.+.++|+++|.+|++|
T Consensus 221 --e~l~vsVG~Dkki~~yD~~s~~s~~------------------------------~l~y~~Plstvaf~~~G~~L~aG 268 (673)
T KOG4378|consen 221 --EALLVSVGYDKKINIYDIRSQASTD------------------------------RLTYSHPLSTVAFSECGTYLCAG 268 (673)
T ss_pred --cceEEEecccceEEEeecccccccc------------------------------eeeecCCcceeeecCCceEEEee
Confidence 3689999999999999998644211 11123467899999999999999
Q ss_pred eCCCeEEEEECCC-CceEEEecCCCCCeEEEEEcC
Q 000270 559 IMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHP 592 (1749)
Q Consensus 559 s~DGtI~VWDl~t-gklv~tL~gH~~~VtsLafSP 592 (1749)
...|.|..||++. ..++.++..|...|++|+|-|
T Consensus 269 ~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 269 NSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred cCCceEEEEecccCCCCceEeeecccceeEEEeee
Confidence 9999999999975 568899999999999999988
|
|
| >cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.3e-18 Score=167.33 Aligned_cols=92 Identities=12% Similarity=0.305 Sum_probs=84.5
Q ss_pred HHHHHHhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHH
Q 000270 1644 FAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLST 1723 (1749)
Q Consensus 1644 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~~s~~~~ 1723 (1749)
+.++++.+..+..+++|..|++....|+||++|+.||||+||++||+++.|+++++|..|+++||+||..||++++++++
T Consensus 5 c~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~ 84 (97)
T cd05503 5 CETILDEMEAHEDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDDSEVGR 84 (97)
T ss_pred HHHHHHHHHcCCCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 34445555557889999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 000270 1724 KIKRLSDLVTRT 1735 (1749)
Q Consensus 1724 ~a~~l~~~~~~~ 1735 (1749)
+|..|+++|.+.
T Consensus 85 ~a~~l~~~f~~~ 96 (97)
T cd05503 85 AGHNMRKFFEKR 96 (97)
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
|
Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.9e-18 Score=169.49 Aligned_cols=83 Identities=16% Similarity=0.267 Sum_probs=80.0
Q ss_pred ccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHH
Q 000270 1657 QYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTL 1736 (1749)
Q Consensus 1657 ~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~~s~~~~~a~~l~~~~~~~l 1736 (1749)
+++|..++.....||||++|+.||||+||++||+++.|.++++|..||+|||.||++||+++|.++++|..|+++|..++
T Consensus 25 s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~f~~~~ 104 (107)
T cd05516 25 AEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFKSAR 104 (107)
T ss_pred eHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 78999998888999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcC
Q 000270 1737 SSL 1739 (1749)
Q Consensus 1737 ~~~ 1739 (1749)
+++
T Consensus 105 ~~~ 107 (107)
T cd05516 105 QKI 107 (107)
T ss_pred hcC
Confidence 764
|
SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.2e-16 Score=184.32 Aligned_cols=183 Identities=25% Similarity=0.374 Sum_probs=144.4
Q ss_pred ccccccceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEc-cCCCCeEEEEEcC--CCcEEEEEe
Q 000270 228 TMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVSS--NNALVASAS 304 (1749)
Q Consensus 228 ~~~~~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~-gHs~~VtsLafSP--Dg~lLASGS 304 (1749)
.++....+.+.|.||++.|+|+.|+.+|.+||+||+|-.|.|||.-.-++++.+. ||.+.|.++.|-| ++.+|++|+
T Consensus 35 ~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgA 114 (758)
T KOG1310|consen 35 TWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGA 114 (758)
T ss_pred HHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEecc
Confidence 3445566778899999999999999999999999999999999998888887764 8999999999999 577999999
Q ss_pred CCCeEEEEECCCC----------ceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCC
Q 000270 305 NDCIIRVWRLPDG----------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS 374 (1749)
Q Consensus 305 ~DGtIrVWDl~tg----------k~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~ 374 (1749)
.|..|+|+|+... ..+..+..|...|..|+..|++. +.+.++++||+|+-+|++.......-
T Consensus 115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P--htfwsasEDGtirQyDiREph~c~p~------ 186 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP--HTFWSASEDGTIRQYDIREPHVCNPD------ 186 (758)
T ss_pred CcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCC--ceEEEecCCcceeeecccCCccCCcc------
Confidence 9999999999741 34556678999999999999874 58999999999999999864321110
Q ss_pred CcccCCCCCCCCCCCCCCCceEEEEEcCC-CCEEEEecCCCcEEEEeCC
Q 000270 375 DAVAGRNMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNAC 422 (1749)
Q Consensus 375 ~~~~g~~~~~~~s~~~h~~~Vt~LafSPD-G~~LaSGs~DGtVrIWDl~ 422 (1749)
+............--...|+..+|. ..+||+|+.|-.+++||.+
T Consensus 187 ----~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 187 ----EDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred ----ccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 0000000011112245779999995 4689999999999999953
|
|
| >cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.8e-18 Score=166.69 Aligned_cols=93 Identities=19% Similarity=0.222 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCCC
Q 000270 1640 LLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNT 1719 (1749)
Q Consensus 1640 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~~s 1719 (1749)
|.+.+..+++.+..+..++.|..|++...+||||++|++||||+||++||++++|.++++|..||++||.||.+||++++
T Consensus 2 l~~~l~~il~~l~~~~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s 81 (98)
T cd05513 2 LQKALEQLIRQLQRKDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPDT 81 (98)
T ss_pred HHHHHHHHHHHHHcCCccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 56677778888888889999999999888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 000270 1720 DLSTKIKRLSDLV 1732 (1749)
Q Consensus 1720 ~~~~~a~~l~~~~ 1732 (1749)
.++++|..|...=
T Consensus 82 ~~~~~A~~L~~~~ 94 (98)
T cd05513 82 IYYKAAKKLLHSG 94 (98)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999997653
|
The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.1e-16 Score=183.57 Aligned_cols=278 Identities=10% Similarity=0.161 Sum_probs=212.7
Q ss_pred CCCeEEEEEcCCCcEEEEEeCCCeEEEEECCC--CceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCC
Q 000270 285 EGDITDLAVSSNNALVASASNDCIIRVWRLPD--GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 362 (1749)
Q Consensus 285 s~~VtsLafSPDg~lLASGS~DGtIrVWDl~t--gk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg 362 (1749)
.+.|++|.|+|...+|++|+.||+++||-+.. ...+..+.-...+|.+.+|.|+|. ..+++++....+..||+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~--~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGH--SVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCc--eEEEecccceEEEEeecccc
Confidence 57899999999999999999999999998753 345666666678999999999886 37889999999999999887
Q ss_pred cccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCC
Q 000270 363 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 442 (1749)
Q Consensus 363 ~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH 442 (1749)
+..+.-.. .......+..+..|+++++|+..+..|.|.+....++. .+..+ .-
T Consensus 291 k~~k~~~~-----------------~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e---------li~s~-Ki 343 (514)
T KOG2055|consen 291 KVTKLKPP-----------------YGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE---------LITSF-KI 343 (514)
T ss_pred ccccccCC-----------------CCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh---------hhhee-ee
Confidence 75432210 11123457788999999999999999999999886532 22222 34
Q ss_pred CCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCC
Q 000270 443 ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPP 522 (1749)
Q Consensus 443 ~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~ 522 (1749)
.+.|..++|+.++ ..|++++.+|.|.+||++...+... |...
T Consensus 344 eG~v~~~~fsSds--------------------------k~l~~~~~~GeV~v~nl~~~~~~~r---f~D~--------- 385 (514)
T KOG2055|consen 344 EGVVSDFTFSSDS--------------------------KELLASGGTGEVYVWNLRQNSCLHR---FVDD--------- 385 (514)
T ss_pred ccEEeeEEEecCC--------------------------cEEEEEcCCceEEEEecCCcceEEE---Eeec---------
Confidence 6788999999876 7889999999999999997542211 1000
Q ss_pred CCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCC------CceEEEecCCCCCeEEEEEcCCCCc
Q 000270 523 MPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD------GSLVHSLTGHTESTYVLDVHPFNPR 596 (1749)
Q Consensus 523 ~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~t------gklv~tL~gH~~~VtsLafSPdd~r 596 (1749)
..-.-+++|.|++|.|||+|+..|.|.|||..+ .+++.++..-...|++|.|++ +..
T Consensus 386 ----------------G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~-d~q 448 (514)
T KOG2055|consen 386 ----------------GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH-DAQ 448 (514)
T ss_pred ----------------CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc-chh
Confidence 011246788999999999999999999999643 567777777778899999999 777
Q ss_pred EEEEEe--CCCcEEEEeCCCCceEEEEe-----------eeeccCCCEEEEEcCCCeEEEEEC
Q 000270 597 IAMSAG--YDGKTIVWDIWEGIPIRIYE-----------ISRFRDGASIILSDDVGQLYILNT 646 (1749)
Q Consensus 597 lLaSgs--~DGtIrVWDl~tGk~l~tl~-----------~~~~sDG~~LAsgd~DG~I~IWdl 646 (1749)
+|+.++ .+..+++--+.+......|. ..+.|.|.+||+|...|+|.+|.+
T Consensus 449 iLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 449 ILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred hhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 777665 46778887765554444433 234458999999999999999986
|
|
| >cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.4e-18 Score=170.94 Aligned_cols=99 Identities=15% Similarity=0.317 Sum_probs=92.6
Q ss_pred HHHHHHHhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHH
Q 000270 1643 AFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLS 1722 (1749)
Q Consensus 1643 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~~s~~~ 1722 (1749)
.+..+++.+..++.+++|..|++....|+||++|+.||||+||++||++++|+++++|+.||+|||+||.+||++++.++
T Consensus 4 ~l~~ii~~l~~~~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~ 83 (112)
T cd05511 4 ILDEIVNELKNLPDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSVYT 83 (112)
T ss_pred HHHHHHHHHHhCCCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 45666677777899999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCC
Q 000270 1723 TKIKRLSDLVTRTLSSLKA 1741 (1749)
Q Consensus 1723 ~~a~~l~~~~~~~l~~~~~ 1741 (1749)
+.|+.|.++|.++|.++++
T Consensus 84 ~~A~~l~~~~~~~~~~~~~ 102 (112)
T cd05511 84 KKAKEMLELAEELLAEREE 102 (112)
T ss_pred HHHHHHHHHHHHHHHHhHH
Confidence 9999999999999988754
|
Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-17 Score=163.94 Aligned_cols=94 Identities=13% Similarity=0.202 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCC
Q 000270 1639 KLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRN 1718 (1749)
Q Consensus 1639 kl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~~ 1718 (1749)
+|-.++..| -.+.+++.|... ....||||++|++||||+||++||+++.|.++++|+.||+|||+||++||+++
T Consensus 6 ~ce~il~~l----~~~~~s~~f~~~--p~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~~ 79 (102)
T cd05501 6 KCEFLLLKV----YCMSKSGFFISK--PYYIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD 79 (102)
T ss_pred HHHHHHHHH----HhCcccccccCC--CCCCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 344444444 345666666442 23779999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcC
Q 000270 1719 TDLSTKIKRLSDLVTRTLSSL 1739 (1749)
Q Consensus 1719 s~~~~~a~~l~~~~~~~l~~~ 1739 (1749)
+++++|..|+++|.+++++.
T Consensus 80 -~~~~~a~~L~~~Fek~~~~~ 99 (102)
T cd05501 80 -DFGQVGITLEKKFEKNFKEV 99 (102)
T ss_pred -HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998753
|
The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-17 Score=165.43 Aligned_cols=92 Identities=18% Similarity=0.301 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCCC
Q 000270 1640 LLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNT 1719 (1749)
Q Consensus 1640 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~~s 1719 (1749)
+...|..+++.+..+..++.|..|++....|+||++|+.||||+||++||++++|.++++|..||+|||.||.+||++++
T Consensus 2 ~~~~l~~il~~l~~~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s 81 (98)
T cd05512 2 LEVLLRKTLDQLQEKDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAKDT 81 (98)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 44567777777888999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 000270 1720 DLSTKIKRLSDL 1731 (1749)
Q Consensus 1720 ~~~~~a~~l~~~ 1731 (1749)
.+++.|..|++.
T Consensus 82 ~~~~~A~~l~~~ 93 (98)
T cd05512 82 IFYRAAVRLRDQ 93 (98)
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
|
BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.6e-16 Score=184.03 Aligned_cols=260 Identities=15% Similarity=0.241 Sum_probs=190.1
Q ss_pred eEEEEeccC----CCcceEEEeecCCCcEEEEEcCCCcc-cceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCC-
Q 000270 330 VTAIAFSPR----PGSVYQLLSSSDDGTCRIWDARYSQF-SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN- 403 (1749)
Q Consensus 330 VtsIaFSPd----g~~~~~LaSgS~DGtIrIWDl~tg~~-l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPD- 403 (1749)
..|++|... +...+++|.|+.|..|.|||+.-... .+.+.+...................+|+..|.+++|+-.
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 356666543 33345999999999999999874432 222222211111111111123334578888999999875
Q ss_pred CCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCE
Q 000270 404 GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDN 483 (1749)
Q Consensus 404 G~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~ 483 (1749)
...||+|+.|.+|.+||+.++ ++..++..|.+.|.++.|+|.. +..
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g---------~p~~s~~~~~k~Vq~l~wh~~~-------------------------p~~ 301 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTG---------KPKSSITHHGKKVQTLEWHPYE-------------------------PSV 301 (463)
T ss_pred ceeEEecCCCceEEEEEcCCC---------CcceehhhcCCceeEEEecCCC-------------------------ceE
Confidence 458999999999999999874 4566777899999999999865 479
Q ss_pred EEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCC-EEEEEeCCC
Q 000270 484 IVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR-FVLAAIMDC 562 (1749)
Q Consensus 484 LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~-~LATGs~DG 562 (1749)
|++|+.||+|.+.|.+.....+. .....+.|-.++|.|... .+++++.||
T Consensus 302 LLsGs~D~~V~l~D~R~~~~s~~-----------------------------~wk~~g~VEkv~w~~~se~~f~~~tddG 352 (463)
T KOG0270|consen 302 LLSGSYDGTVALKDCRDPSNSGK-----------------------------EWKFDGEVEKVAWDPHSENSFFVSTDDG 352 (463)
T ss_pred EEeccccceEEeeeccCccccCc-----------------------------eEEeccceEEEEecCCCceeEEEecCCc
Confidence 99999999999999984221111 111235688899998765 566777999
Q ss_pred eEEEEECCC-CceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceE----EEEee---eecc----CCC
Q 000270 563 RICVWNAAD-GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI----RIYEI---SRFR----DGA 630 (1749)
Q Consensus 563 tI~VWDl~t-gklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l----~tl~~---~~~s----DG~ 630 (1749)
+|+-+|++. ++++.++..|.++|.+|++++..+.+|+|++.|+.|++|++....+. +.+.. +.|. ...
T Consensus 353 ~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~ 432 (463)
T KOG0270|consen 353 TVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAF 432 (463)
T ss_pred eEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcce
Confidence 999999976 48999999999999999999988999999999999999998654432 12221 1222 556
Q ss_pred EEEEEcCCCeEEEEECCCCccc
Q 000270 631 SIILSDDVGQLYILNTGQGESQ 652 (1749)
Q Consensus 631 ~LAsgd~DG~I~IWdl~tGe~~ 652 (1749)
+||+|+..+.++|||+.++...
T Consensus 433 ~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 433 TLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred EEEecCccceEEEeecccChhH
Confidence 8899999999999999877654
|
|
| >cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.4e-17 Score=167.26 Aligned_cols=103 Identities=15% Similarity=0.182 Sum_probs=92.6
Q ss_pred HHHHHHHHHhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCC--
Q 000270 1641 LSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRN-- 1718 (1749)
Q Consensus 1641 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~~-- 1718 (1749)
-..|..+++.+..+..+|+|..|++....||||++|++||||+||++||++++|.++++|..||++||+||+.||+++
T Consensus 5 r~~L~~il~~l~~~~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~ 84 (112)
T cd05528 5 RLFLRDVLKRLASDKRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNPDRDP 84 (112)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCCCCCc
Confidence 344555556666678899999999999999999999999999999999999999999999999999999999999995
Q ss_pred --CHHHHHHHHHHHHHHHHHhcCCCCc
Q 000270 1719 --TDLSTKIKRLSDLVTRTLSSLKAPQ 1743 (1749)
Q Consensus 1719 --s~~~~~a~~l~~~~~~~l~~~~~~~ 1743 (1749)
+.|+.+|..|++.|.+++.+...+.
T Consensus 85 ~~s~i~~~A~~L~~~~~~~~~~~~~~~ 111 (112)
T cd05528 85 ADKLIRSRACELRDEVHAMIEAELDPL 111 (112)
T ss_pred cccHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 6999999999999999998876553
|
Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver |
| >cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-17 Score=166.79 Aligned_cols=102 Identities=15% Similarity=0.218 Sum_probs=93.5
Q ss_pred CchhhhHHHHHHHHHHHhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhh---CCCCCHHHHHHHHHHHHH
Q 000270 1633 DDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLEN---NYYRGLEAVKHDIAVMLS 1709 (1749)
Q Consensus 1633 dpe~r~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen---~~Yr~~~~~~~Dv~li~~ 1709 (1749)
.++.+.+|..++..|.. +..+++|..|++. ..|+||++|++||||+||++||++ ++|.++++|..||+|||+
T Consensus 2 ~~~~~~~c~~il~~l~~----~~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~ 76 (109)
T cd05502 2 SPIDQRKCERLLLELYC----HELSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFK 76 (109)
T ss_pred CHHHHHHHHHHHHHHHh----CCCChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHH
Confidence 45677788888777754 5889999999988 899999999999999999999999 599999999999999999
Q ss_pred hhhhhcCCCCHHHHHHHHHHHHHHHHHhcC
Q 000270 1710 NAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1739 (1749)
Q Consensus 1710 N~~~fN~~~s~~~~~a~~l~~~~~~~l~~~ 1739 (1749)
||..||++++.++++|+.|+++|.++++++
T Consensus 77 Na~~yN~~~s~i~~~a~~l~~~f~~~~~~~ 106 (109)
T cd05502 77 NCYKFNEEDSEVAQAGKELELFFEEQLKEI 106 (109)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999875
|
Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-16 Score=177.59 Aligned_cols=276 Identities=15% Similarity=0.327 Sum_probs=201.0
Q ss_pred cCCCCEEEEEECCCC----CEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCC-CcEEEEEeCCCeEEEEECC
Q 000270 241 GHRNAVYCAIFDRSG----RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSN-NALVASASNDCIIRVWRLP 315 (1749)
Q Consensus 241 GH~~~Vt~VaFSPDG----~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPD-g~lLASGS~DGtIrVWDl~ 315 (1749)
.|...-+.++|+-|- -+||.|+.-|.|+|.|+.++++...+.+|...|..|.|.|+ .++|+++|.|..|++|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 477788888997643 47899999999999999999999999999999999999995 4799999999999999999
Q ss_pred CCceEEEec---CCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecC-----CCCCc--ccCC-CCCC
Q 000270 316 DGLPISVLR---GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIP-----RPSDA--VAGR-NMAP 384 (1749)
Q Consensus 316 tgk~l~tL~---gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~-----~~~~~--~~g~-~~~~ 384 (1749)
+..++..+. ||...|.++.|++++. +|++++.|.+|++|++...++...+... .+... .... ....
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd---~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~ 243 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSLDGD---RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPD 243 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcCCCC---eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccc
Confidence 999999874 7999999999999998 9999999999999999855543333211 00000 0000 0111
Q ss_pred CCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCC-----CCCCCCcceeeecCCCCCeEEEEEcCCCcccc
Q 000270 385 SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTD-----DSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 459 (1749)
Q Consensus 385 ~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~-----~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~ 459 (1749)
..+..-|...|-|+.|- |.++++-+.++.|..|........ ........+..+.-....|+-|.|.=+.
T Consensus 244 fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~---- 317 (385)
T KOG1034|consen 244 FSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP---- 317 (385)
T ss_pred ccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH----
Confidence 12445678888888886 578999888999999987321110 0111122233344445566666665332
Q ss_pred cccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCC
Q 000270 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 539 (1749)
Q Consensus 460 ~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h 539 (1749)
..+.||.|...|.|.+||++...... .....-...
T Consensus 318 --------------------~~~~la~gnq~g~v~vwdL~~~ep~~-------------------------~ttl~~s~~ 352 (385)
T KOG1034|consen 318 --------------------WQKMLALGNQSGKVYVWDLDNNEPPK-------------------------CTTLTHSKS 352 (385)
T ss_pred --------------------HHHHHhhccCCCcEEEEECCCCCCcc-------------------------CceEEeccc
Confidence 23689999999999999998643210 000011112
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 000270 540 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAA 570 (1749)
Q Consensus 540 ~~~VtsVafSPDG~~LATGs~DGtI~VWDl~ 570 (1749)
...|...+||.||.+|+..+.|++|.-||..
T Consensus 353 ~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 353 GSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 3458999999999999999999999999953
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-16 Score=187.68 Aligned_cols=326 Identities=18% Similarity=0.319 Sum_probs=240.0
Q ss_pred CCccccccceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEc-cCCCCeEEEEEcC--CCcEEEE
Q 000270 226 PSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVSS--NNALVAS 302 (1749)
Q Consensus 226 p~~~~~~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~-gHs~~VtsLafSP--Dg~lLAS 302 (1749)
....++.+.+...|.+|.+.|..|.|...|..|++|++|..|.+||+..+..+..|. ||...|....|-| +...|++
T Consensus 125 s~~~vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~ 204 (559)
T KOG1334|consen 125 SRLFVQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVT 204 (559)
T ss_pred hHHHHHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCcee
Confidence 345677888889999999999999999999999999999999999999988777765 7999999988988 4568999
Q ss_pred EeCCCeEEEEECC-CCce--EEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccC
Q 000270 303 ASNDCIIRVWRLP-DGLP--ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAG 379 (1749)
Q Consensus 303 GS~DGtIrVWDl~-tgk~--l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g 379 (1749)
++.||.|++=.+. ++.+ ...+..|.+.|.-++.-|+.. +.|.+++.|+.+.-+|++++.....+.....
T Consensus 205 ~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp--~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~------ 276 (559)
T KOG1334|consen 205 SSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP--KPFLSCGEDAVVFHIDLRQDVPAEKFVCREA------ 276 (559)
T ss_pred ccccCceeeeeeccccceecceecccccCccceeeecCCCC--CcccccccccceeeeeeccCCccceeeeecc------
Confidence 9999999998764 3332 345667999999999999865 5799999999999999998776555432110
Q ss_pred CCCCCCCCCCCCCCceEEEEEcCCC-CEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeec------CCCCCeEEEEEc
Q 000270 380 RNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS------GHENDVNYVQFS 452 (1749)
Q Consensus 380 ~~~~~~~s~~~h~~~Vt~LafSPDG-~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~------gH~~~V~sVafS 452 (1749)
.....-....++..|-. ..|++|+.|..+++||.+........ ..+..+. ...-.|++++|+
T Consensus 277 --------~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n---~~~~~f~p~hl~~d~~v~ITgl~Ys 345 (559)
T KOG1334|consen 277 --------DEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENN---GVLDKFCPHHLVEDDPVNITGLVYS 345 (559)
T ss_pred --------CCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhcccc---chhhhcCCccccccCcccceeEEec
Confidence 00112357788998855 48999999999999998753321111 1122222 223478899999
Q ss_pred CCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCC
Q 000270 453 GCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGP 532 (1749)
Q Consensus 453 pdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~ 532 (1749)
.++ .-|++...|-.|+++.-.-+. ...+.+..+.....
T Consensus 346 h~~--------------------------sElLaSYnDe~IYLF~~~~~~----------------G~~p~~~s~~~~~~ 383 (559)
T KOG1334|consen 346 HDG--------------------------SELLASYNDEDIYLFNKSMGD----------------GSEPDPSSPREQYV 383 (559)
T ss_pred CCc--------------------------cceeeeecccceEEecccccc----------------CCCCCCCcchhhcc
Confidence 776 455556677788888433211 00111111111112
Q ss_pred cccccCCCCC--eeEEE-EcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 000270 533 RQRILPTPRG--VNMIV-WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIV 609 (1749)
Q Consensus 533 i~~l~~h~~~--VtsVa-fSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrV 609 (1749)
...+.+|... |..+- |-|...||++|+.-|.|.||+-.++++++.+.|...-|+||.-||..+ +|||+|-|.-|+|
T Consensus 384 k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~P-vLAsSGid~DVKI 462 (559)
T KOG1334|consen 384 KRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLP-VLASSGIDHDVKI 462 (559)
T ss_pred chhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCc-hhhccCCccceee
Confidence 2225666543 55555 468889999999999999999999999999998888999999999554 7889999999999
Q ss_pred EeCC
Q 000270 610 WDIW 613 (1749)
Q Consensus 610 WDl~ 613 (1749)
|-..
T Consensus 463 WTP~ 466 (559)
T KOG1334|consen 463 WTPL 466 (559)
T ss_pred ecCC
Confidence 9763
|
|
| >cd05500 Bromo_BDF1_2_I Bromodomain | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.6e-17 Score=163.46 Aligned_cols=100 Identities=22% Similarity=0.344 Sum_probs=89.1
Q ss_pred CchhhhHHHHHHHHHHHhhcccccccccccccccc--cCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHh
Q 000270 1633 DDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSN 1710 (1749)
Q Consensus 1633 dpe~r~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N 1710 (1749)
.++.+..|++++.+|. .++.+++|..|++.. ..|+||++|++||||+||++||+++.|.++++|..||++||+|
T Consensus 2 t~~~~~~~~~ii~~l~----~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 77 (103)
T cd05500 2 TKHQHKFLLSSIRSLK----RLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDN 77 (103)
T ss_pred CHHHHHHHHHHHHHHH----cCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 3456666777666664 568899999998754 6899999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCHHHHHHHHHHHHHHHHH
Q 000270 1711 AESYFGRNTDLSTKIKRLSDLVTRTL 1736 (1749)
Q Consensus 1711 ~~~fN~~~s~~~~~a~~l~~~~~~~l 1736 (1749)
|.+||++++.++.+|+.|++.|.+.|
T Consensus 78 a~~yN~~~s~~~~~A~~l~~~fe~~~ 103 (103)
T cd05500 78 CLTFNGPEHPVSQMGKRLQAAFEKHL 103 (103)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999998764
|
BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.8e-17 Score=163.61 Aligned_cols=97 Identities=21% Similarity=0.340 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhh--cccccccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcC
Q 000270 1639 KLLSAFAKLEQSA--NRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFG 1716 (1749)
Q Consensus 1639 kl~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~ 1716 (1749)
+|...+..+.+.. .+..-+++|..++.....||||++|++||||+||++||+++.|+++++|+.|+++||.||.+||+
T Consensus 4 ~~~~l~~~i~~~~~~~g~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~ 83 (103)
T cd05520 4 PLWQLYDTIRNARNNQGQLLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNV 83 (103)
T ss_pred hHHHHHHHHHhhcCCCCCCccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 3444444444332 24466789999998889999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 000270 1717 RNTDLSTKIKRLSDLVTRT 1735 (1749)
Q Consensus 1717 ~~s~~~~~a~~l~~~~~~~ 1735 (1749)
+++.++++|..|+++|.++
T Consensus 84 ~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 84 PNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999865
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.9e-17 Score=163.04 Aligned_cols=85 Identities=19% Similarity=0.320 Sum_probs=80.9
Q ss_pred ccccccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHH
Q 000270 1653 RVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLV 1732 (1749)
Q Consensus 1653 ~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~~s~~~~~a~~l~~~~ 1732 (1749)
.+.-+++|..++...+.||||++|++||||+||++||++++|.++++|..||++||.||++||+++|.+++.|..|+++|
T Consensus 20 ~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~yN~~~s~i~~~A~~L~~~~ 99 (105)
T cd05515 20 GRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKYNEPDSQIYKDALTLQKVL 99 (105)
T ss_pred CCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 55667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 000270 1733 TRTLS 1737 (1749)
Q Consensus 1733 ~~~l~ 1737 (1749)
.++.+
T Consensus 100 ~~~~~ 104 (105)
T cd05515 100 LETKR 104 (105)
T ss_pred HHHHc
Confidence 98764
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >cd05499 Bromo_BDF1_2_II Bromodomain | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.5e-17 Score=162.75 Aligned_cols=98 Identities=13% Similarity=0.231 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHHhhcccccccccccccccc--cCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhc
Q 000270 1638 NKLLSAFAKLEQSANRVQDQYGVQKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYF 1715 (1749)
Q Consensus 1638 ~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN 1715 (1749)
..|..++..|.+. ..+..+|+|..|++.. ..|+||++|++||||+||++||+++.|+++++|..|+++||.||++||
T Consensus 3 ~~c~~Il~~l~~~-~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 3 KFCEEVLKELMKP-KHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred HHHHHHHHHHHcc-cCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4566666666542 2346789999998877 889999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 000270 1716 GRNTDLSTKIKRLSDLVTRTL 1736 (1749)
Q Consensus 1716 ~~~s~~~~~a~~l~~~~~~~l 1736 (1749)
++++.++++|+.|+++|.+++
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999998764
|
BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.2e-15 Score=178.50 Aligned_cols=129 Identities=21% Similarity=0.243 Sum_probs=101.5
Q ss_pred eeEEEEcC-CCCEEEEEeCCCeEEEEECCCCc-------eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 000270 543 VNMIVWSL-DNRFVLAAIMDCRICVWNAADGS-------LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1749)
Q Consensus 543 VtsVafSP-DG~~LATGs~DGtI~VWDl~tgk-------lv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~t 614 (1749)
|+.+.|.| |...||+|+.||.|+||.+..+. +-..+++|...|++|.|||.-..+|++++.|-+|++||+.+
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence 55666766 56789999999999999987643 44678899999999999998888999999999999999999
Q ss_pred CceEEEEee--------eeccCCCEEEEEcCCCeEEEEECCCCcccccc---c-----ceeeecCCCcceeEc
Q 000270 615 GIPIRIYEI--------SRFRDGASIILSDDVGQLYILNTGQGESQKDA---K-----YDQFFLGDYRPLVQD 671 (1749)
Q Consensus 615 Gk~l~tl~~--------~~~sDG~~LAsgd~DG~I~IWdl~tGe~~k~~---~-----~~~fFs~D~r~Lv~d 671 (1749)
++....+.+ .|.+||+++|+.+.||+|++|....++.-... + ....|.-|++.++..
T Consensus 710 ~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~ 782 (1012)
T KOG1445|consen 710 AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVV 782 (1012)
T ss_pred hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEe
Confidence 877655544 46779999999999999999998776543111 1 113566666666443
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.6e-16 Score=174.90 Aligned_cols=286 Identities=13% Similarity=0.182 Sum_probs=197.4
Q ss_pred CEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcC--CCcEEEEEeCCCeEEEEECCCCceEEEe--cCCC-Cce
Q 000270 256 RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSS--NNALVASASNDCIIRVWRLPDGLPISVL--RGHT-AAV 330 (1749)
Q Consensus 256 ~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSP--Dg~lLASGS~DGtIrVWDl~tgk~l~tL--~gHs-~~V 330 (1749)
..+|++...|.|+|||..+|+.+..|++|...+..+.|.. ....+.+|+.||+|++||+++......+ ..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688888999999999999999999999999999999987 4668999999999999999887655444 3444 355
Q ss_pred EEEEeccCCCcceEEEeec----CCCcEEEEEcCCCcc-cceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcC-CC
Q 000270 331 TAIAFSPRPGSVYQLLSSS----DDGTCRIWDARYSQF-SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NG 404 (1749)
Q Consensus 331 tsIaFSPdg~~~~~LaSgS----~DGtIrIWDl~tg~~-l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSP-DG 404 (1749)
.+++..-... .+++|. .+-.|.+||++..+. +..+ ...|...|+++.|+| +-
T Consensus 121 ~~ld~nck~~---ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~-------------------~eSH~DDVT~lrFHP~~p 178 (376)
T KOG1188|consen 121 ICLDLNCKKN---IIACGTELTRSDASVVLWDVRSEQQLLRQL-------------------NESHNDDVTQLRFHPSDP 178 (376)
T ss_pred eEeeccCcCC---eEEeccccccCceEEEEEEeccccchhhhh-------------------hhhccCcceeEEecCCCC
Confidence 6666654443 667664 467899999998765 2222 256889999999999 55
Q ss_pred CEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEE
Q 000270 405 TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI 484 (1749)
Q Consensus 405 ~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~L 484 (1749)
++|++|+.||.|.|||+.... ....+...-.|...|.++.|...+. +.|
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~------EeDaL~~viN~~sSI~~igw~~~~y-------------------------krI 227 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDN------EEDALLHVINHGSSIHLIGWLSKKY-------------------------KRI 227 (376)
T ss_pred CeEEeecccceEEeeecCCCc------chhhHHHhhcccceeeeeeeecCCc-------------------------ceE
Confidence 799999999999999996431 1222334456778899999998762 579
Q ss_pred EEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeC-CCe
Q 000270 485 VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM-DCR 563 (1749)
Q Consensus 485 aSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~-DGt 563 (1749)
.+-+..++..+|++..+........-. ..............-|.+.. ..+..++++++. -+.
T Consensus 228 ~clTH~Etf~~~ele~~~~~~~~~~~~----------------~~~~d~r~~~~~dY~I~~~~-~~~~~~~~l~g~~~n~ 290 (376)
T KOG1188|consen 228 MCLTHMETFAIYELEDGSEETWLENPD----------------VSADDLRKEDNCDYVINEHS-PGDKDTCALAGTDSNK 290 (376)
T ss_pred EEEEccCceeEEEccCCChhhcccCcc----------------chhhhHHhhhhhhheeeccc-CCCcceEEEeccccCc
Confidence 999999999999998755221111000 00000000011111122221 223344444443 444
Q ss_pred EEEEEC---CC---CceEEEecC-CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 000270 564 ICVWNA---AD---GSLVHSLTG-HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1749)
Q Consensus 564 I~VWDl---~t---gklv~tL~g-H~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl 612 (1749)
..++-+ .+ ++.+..+.| |..-|.++.|.. .+.+++|||.||.+.+|..
T Consensus 291 ~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~-~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 291 GTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDV-KNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eeEEEeeecccccccCccccccCCcHHHHHHHhhhc-ccceeeccCCCceEEEEec
Confidence 444433 33 344556776 667788888875 6779999999999999986
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.2e-15 Score=174.61 Aligned_cols=157 Identities=24% Similarity=0.395 Sum_probs=135.0
Q ss_pred CCCEEEEEECCCCC-EEEEEeCCcEEEEEECCCC---------eEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEE
Q 000270 243 RNAVYCAIFDRSGR-YVITGSDDRLVKIWSMETA---------YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1749)
Q Consensus 243 ~~~Vt~VaFSPDG~-~LATGS~DGtVrIWDl~Tg---------~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVW 312 (1749)
..+|+.+.|.++.. .||||+.|..|+||-+..+ +.+..|..|...|+++.|+|+|.+||+|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 35799999998776 9999999999999987532 2345678999999999999999999999999999999
Q ss_pred ECC--------C--------CceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCc
Q 000270 313 RLP--------D--------GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDA 376 (1749)
Q Consensus 313 Dl~--------t--------gk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~ 376 (1749)
-.. + ......+.+|...|..++|+|++. ++++++.|.++++||+..|+....+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~---~l~s~s~dns~~l~Dv~~G~l~~~~-------- 161 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN---FLVSGSVDNSVRLWDVHAGQLLAIL-------- 161 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc---eeeeeeccceEEEEEeccceeEeec--------
Confidence 765 2 223466789999999999999987 8999999999999999999876554
Q ss_pred ccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCC
Q 000270 377 VAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNAC 422 (1749)
Q Consensus 377 ~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~ 422 (1749)
..|.+.|..++|.|-++++++-+.|...+++.+.
T Consensus 162 ------------~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 162 ------------DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred ------------cccccccceeecchhhhhhhhhccCcccceeeee
Confidence 4688899999999999999999999877777764
|
|
| >cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.3e-17 Score=162.59 Aligned_cols=83 Identities=18% Similarity=0.335 Sum_probs=78.3
Q ss_pred ccccccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHH
Q 000270 1653 RVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLV 1732 (1749)
Q Consensus 1653 ~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~~s~~~~~a~~l~~~~ 1732 (1749)
++.-+++|..++.....|+||++|++||||+||++||++++|.++++|..||+|||.||.+||+++|.+++.|..|+++|
T Consensus 20 gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~l~~~f 99 (103)
T cd05517 20 GRLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTFNEPGSQVYKDANAIKKIF 99 (103)
T ss_pred CCChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 45556889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 000270 1733 TRT 1735 (1749)
Q Consensus 1733 ~~~ 1735 (1749)
..+
T Consensus 100 ~~~ 102 (103)
T cd05517 100 TAK 102 (103)
T ss_pred Hhc
Confidence 753
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.5e-15 Score=176.64 Aligned_cols=274 Identities=14% Similarity=0.197 Sum_probs=197.2
Q ss_pred cccccccccccCcccccCCCcchhhhhccccCCCccccccceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECC
Q 000270 194 QVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME 273 (1749)
Q Consensus 194 ~V~~l~~r~~gg~~~~~~~~~~l~~~~~~~a~p~~~~~~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~ 273 (1749)
-|+.+.+.+.|..+. .++... ........+.++++|+||.+.|+||+|+.||+.+|+|+.|..|.||+-.
T Consensus 14 ci~d~afkPDGsqL~--------lAAg~r--lliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k 83 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLI--------LAAGSR--LLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK 83 (1081)
T ss_pred chheeEECCCCceEE--------EecCCE--EEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc
Confidence 567777777775321 111111 1123445577899999999999999999999999999999999999975
Q ss_pred CCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCc
Q 000270 274 TAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGT 353 (1749)
Q Consensus 274 Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGt 353 (1749)
-...++ -.|...|.||.|+|-...|++++-. ..-+|........ ..+ ....|.+.+|..||. +|+.|-.+|+
T Consensus 84 lEG~Lk--YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~-K~k-ss~R~~~CsWtnDGq---ylalG~~nGT 155 (1081)
T KOG1538|consen 84 LEGILK--YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVS-KHK-SSSRIICCSWTNDGQ---YLALGMFNGT 155 (1081)
T ss_pred ccceee--eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHH-hhh-hheeEEEeeecCCCc---EEEEeccCce
Confidence 433322 2599999999999999999999865 4678986543221 111 345788999999997 9999999999
Q ss_pred EEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCC-----CEEEEecCCCcEEEEeCCCCCCCC
Q 000270 354 CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-----TVFVTGSSDTLARVWNACKPNTDD 428 (1749)
Q Consensus 354 IrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG-----~~LaSGs~DGtVrIWDl~t~~~~~ 428 (1749)
|.|-+- +++....+. ..++....|++++|+|.. ..+++.....++.+|.+..
T Consensus 156 IsiRNk-~gEek~~I~-----------------Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG----- 212 (1081)
T KOG1538|consen 156 ISIRNK-NGEEKVKIE-----------------RPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG----- 212 (1081)
T ss_pred EEeecC-CCCcceEEe-----------------CCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-----
Confidence 999753 333222221 224567789999999953 4788888888888888742
Q ss_pred CCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCcccc
Q 000270 429 SDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAA 508 (1749)
Q Consensus 429 s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~ 508 (1749)
+.+..-+.-.-...|+.+.++| .+++.|+.|+.+.+|.-..
T Consensus 213 -----~~Igk~r~L~FdP~CisYf~NG--------------------------Ey~LiGGsdk~L~~fTR~G-------- 253 (1081)
T KOG1538|consen 213 -----KQIGKDRALNFDPCCISYFTNG--------------------------EYILLGGSDKQLSLFTRDG-------- 253 (1081)
T ss_pred -----eeecccccCCCCchhheeccCC--------------------------cEEEEccCCCceEEEeecC--------
Confidence 2222222223344577777776 8999999999999995331
Q ss_pred ccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 000270 509 RWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 569 (1749)
Q Consensus 509 ~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl 569 (1749)
-...++......|+.++..|++++++.|+.||+|.-|++
T Consensus 254 ----------------------vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 254 ----------------------VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred ----------------------eEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 112223334568999999999999999999999998874
|
|
| >KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.5e-17 Score=207.45 Aligned_cols=106 Identities=16% Similarity=0.288 Sum_probs=95.8
Q ss_pred hhhHHHHHHHHHHHhhcccccccccccccccc--cCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhh
Q 000270 1636 NRNKLLSAFAKLEQSANRVQDQYGVQKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAES 1713 (1749)
Q Consensus 1636 ~r~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~ 1713 (1749)
....++..+..|+..+..|..+|+|..||++. .-||||+||++||||+||++||++++|+++.+|..||||||.||++
T Consensus 219 ~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm~ 298 (640)
T KOG1474|consen 219 LTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCMT 298 (640)
T ss_pred ccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHHHh
Confidence 34566777777777778888899999999865 3499999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHhcCCC
Q 000270 1714 YFGRNTDLSTKIKRLSDLVTRTLSSLKA 1741 (1749)
Q Consensus 1714 fN~~~s~~~~~a~~l~~~~~~~l~~~~~ 1741 (1749)
||.++++++.+|+.|++.|...+..+..
T Consensus 299 YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~ 326 (640)
T KOG1474|consen 299 YNPEGSDVYAMAKKLQEVFEERWASMPL 326 (640)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999988554
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-16 Score=202.52 Aligned_cols=246 Identities=17% Similarity=0.287 Sum_probs=192.2
Q ss_pred CEEEEEECCCCCE----EEEEeCCcEEEEEECCC------CeEEEEEccCCCCeEEEEEcCCC-cEEEEEeCCCeEEEEE
Q 000270 245 AVYCAIFDRSGRY----VITGSDDRLVKIWSMET------AYCLASCRGHEGDITDLAVSSNN-ALVASASNDCIIRVWR 313 (1749)
Q Consensus 245 ~Vt~VaFSPDG~~----LATGS~DGtVrIWDl~T------g~~l~tL~gHs~~VtsLafSPDg-~lLASGS~DGtIrVWD 313 (1749)
.-+.++|.+.|.. ||.|..||.|.+||... ...+.++..|.+.|..|.|++.. ++||+|+.||.|.|||
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWD 145 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWD 145 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEec
Confidence 4578889887765 88999999999999865 23466778899999999999954 5999999999999999
Q ss_pred CCCCceEEEec--CCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCC
Q 000270 314 LPDGLPISVLR--GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQ 391 (1749)
Q Consensus 314 l~tgk~l~tL~--gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h 391 (1749)
+..-+.-.++. .....|.+|+|...-. +.|++++.+|.+.|||++..+.+..+.. ...
T Consensus 146 lnn~~tP~~~~~~~~~~eI~~lsWNrkvq--hILAS~s~sg~~~iWDlr~~~pii~ls~------------------~~~ 205 (1049)
T KOG0307|consen 146 LNKPETPFTPGSQAPPSEIKCLSWNRKVS--HILASGSPSGRAVIWDLRKKKPIIKLSD------------------TPG 205 (1049)
T ss_pred cCCcCCCCCCCCCCCcccceEeccchhhh--HHhhccCCCCCceeccccCCCccccccc------------------CCC
Confidence 98754433331 2457899999998654 5899999999999999998765544421 111
Q ss_pred CCceEEEEEcCCC-CEEEEecCCC---cEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCC
Q 000270 392 SHQIFCCAFNANG-TVFVTGSSDT---LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK 467 (1749)
Q Consensus 392 ~~~Vt~LafSPDG-~~LaSGs~DG---tVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~ 467 (1749)
...+..++|+|+. ..|++++.|. .|.+||++.. ...+.++.+|...|.++.|++.+
T Consensus 206 ~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a--------ssP~k~~~~H~~GilslsWc~~D------------ 265 (1049)
T KOG0307|consen 206 RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA--------SSPLKILEGHQRGILSLSWCPQD------------ 265 (1049)
T ss_pred ccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc--------CCchhhhcccccceeeeccCCCC------------
Confidence 2457899999976 3566665543 6999999753 34567789999999999999865
Q ss_pred CCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEE
Q 000270 468 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 547 (1749)
Q Consensus 468 ~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVa 547 (1749)
..+|++++.|+.|.+|+..+++.+ ..+.....++..+.
T Consensus 266 -------------~~lllSsgkD~~ii~wN~~tgEvl-----------------------------~~~p~~~nW~fdv~ 303 (1049)
T KOG0307|consen 266 -------------PRLLLSSGKDNRIICWNPNTGEVL-----------------------------GELPAQGNWCFDVQ 303 (1049)
T ss_pred -------------chhhhcccCCCCeeEecCCCceEe-----------------------------eecCCCCcceeeee
Confidence 378999999999999999985532 22333556789999
Q ss_pred EcCCCC-EEEEEeCCCeEEEEECCCC
Q 000270 548 WSLDNR-FVLAAIMDCRICVWNAADG 572 (1749)
Q Consensus 548 fSPDG~-~LATGs~DGtI~VWDl~tg 572 (1749)
|+|... .|++++.||.|-||.+..+
T Consensus 304 w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 304 WCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred ecCCCcchhhhheeccceeeeeeecC
Confidence 999776 8888999999999998654
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-15 Score=174.06 Aligned_cols=295 Identities=21% Similarity=0.243 Sum_probs=202.0
Q ss_pred ccceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECC--------C--------CeEEEEEccCCCCeEEEEEcC
Q 000270 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME--------T--------AYCLASCRGHEGDITDLAVSS 295 (1749)
Q Consensus 232 ~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~--------T--------g~~l~tL~gHs~~VtsLafSP 295 (1749)
+.+.+..|.+|..+|++|.|+|+|.+||+|+++|.|.+|-.. + ....+.+.+|...|+.++|+|
T Consensus 54 ~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~ 133 (434)
T KOG1009|consen 54 KVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP 133 (434)
T ss_pred eEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC
Confidence 445677899999999999999999999999999999999765 3 345667889999999999999
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCC-CC
Q 000270 296 NNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR-PS 374 (1749)
Q Consensus 296 Dg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~-~~ 374 (1749)
++.++++++.|..+++||+..|..++.+..|...|..++|.|-++ ++++-+.|...+.+.+...+.+..+.... +.
T Consensus 134 d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~q---yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~ 210 (434)
T KOG1009|consen 134 DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQ---YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPA 210 (434)
T ss_pred CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhh---hhhhhccCcccceeeeeeeeeeeeeeeeEeee
Confidence 999999999999999999999999999999999999999999887 88998888877777766554443332100 00
Q ss_pred CcccCCCCCCCC--CCCCCCCceEEEEEcCCCCEEEEecC----CCcE-----EEEeCCCCCCCCCCCCCcceeeecCCC
Q 000270 375 DAVAGRNMAPSS--SAGPQSHQIFCCAFNANGTVFVTGSS----DTLA-----RVWNACKPNTDDSDQPNHEIDVLSGHE 443 (1749)
Q Consensus 375 ~~~~g~~~~~~~--s~~~h~~~Vt~LafSPDG~~LaSGs~----DGtV-----rIWDl~t~~~~~s~~~~~~i~~l~gH~ 443 (1749)
............ ...........++|+|+|.+|++... .+.+ ++|+-. ....++..+.+..
T Consensus 211 ~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk--------~l~rP~~~lp~~~ 282 (434)
T KOG1009|consen 211 KAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRK--------DLKRPAARLPSPK 282 (434)
T ss_pred cccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccc--------cccCceeecCCCC
Confidence 000000000000 00111233567899999999987642 2222 333321 1233455666777
Q ss_pred CCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCC
Q 000270 444 NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPM 523 (1749)
Q Consensus 444 ~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~ 523 (1749)
.++..+.|+|--.. +-....+... + -..-..++.......|.+||..+-.++...
T Consensus 283 k~~lavr~~pVy~e----lrp~~~~~~~--~---~lpyrlvfaiAt~~svyvydtq~~~P~~~v---------------- 337 (434)
T KOG1009|consen 283 KPALAVRFSPVYYE----LRPLSSEKFL--F---VLPYRLVFAIATKNSVYVYDTQTLEPLAVV---------------- 337 (434)
T ss_pred cceEEEEeeeeEEE----eccccccccc--c---ccccceEEEEeecceEEEeccccccceEEE----------------
Confidence 78888888874311 1111111100 0 011234445555668999998863322211
Q ss_pred CCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 000270 524 PPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSL 574 (1749)
Q Consensus 524 ~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgkl 574 (1749)
-.-|-..|+.++|++||.+|+..+.||...+.-+..+++
T Consensus 338 ------------~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 338 ------------DNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred ------------eeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 122667899999999999999999999877766655443
|
|
| >smart00297 BROMO bromo domain | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-16 Score=160.82 Aligned_cols=104 Identities=22% Similarity=0.383 Sum_probs=96.9
Q ss_pred hhhHHHHHHHHHHHhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhc
Q 000270 1636 NRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYF 1715 (1749)
Q Consensus 1636 ~r~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN 1715 (1749)
...++...+..+++.+..++.+++|..|+.....|+||++|+.||||++|++||+++.|+++++|..|+++||.||.+||
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n 83 (107)
T smart00297 4 LQKKLQSLLKAVLDKLDSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYN 83 (107)
T ss_pred hHHHHHHHHHHHHHHHHhCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 45677788888888888888999999999988899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcC
Q 000270 1716 GRNTDLSTKIKRLSDLVTRTLSSL 1739 (1749)
Q Consensus 1716 ~~~s~~~~~a~~l~~~~~~~l~~~ 1739 (1749)
++++.++++|..|.+.|.+.++++
T Consensus 84 ~~~s~~~~~a~~l~~~f~~~~~~~ 107 (107)
T smart00297 84 GPDSEVYKDAKKLEKFFEKKLREL 107 (107)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999998753
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.3e-16 Score=184.61 Aligned_cols=265 Identities=21% Similarity=0.263 Sum_probs=194.7
Q ss_pred ccceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCC--------CeEEEEEccCCCCeEEEEEcCCCcEEEEE
Q 000270 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET--------AYCLASCRGHEGDITDLAVSSNNALVASA 303 (1749)
Q Consensus 232 ~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~T--------g~~l~tL~gHs~~VtsLafSPDg~lLASG 303 (1749)
++..-.++.-|.+.|+.++|.+....|++|+.||+|++|+++. -+.+.+|++|.++|.|+++.+++..+.+|
T Consensus 283 ~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysg 362 (577)
T KOG0642|consen 283 KWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSG 362 (577)
T ss_pred ecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEee
Confidence 3445558999999999999999999999999999999999932 35688999999999999999999999999
Q ss_pred eCCCeEEEEECCCC----------ceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCC
Q 000270 304 SNDCIIRVWRLPDG----------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP 373 (1749)
Q Consensus 304 S~DGtIrVWDl~tg----------k~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~ 373 (1749)
+.||+|+.|++... ....++.||+..|+.+++++... .|++++.||+|++|+...... .++..
T Consensus 363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~---~Llscs~DgTvr~w~~~~~~~-~~f~~--- 435 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD---RLLSCSSDGTVRLWEPTEESP-CTFGE--- 435 (577)
T ss_pred ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc---ceeeecCCceEEeeccCCcCc-cccCC---
Confidence 99999999976421 23456789999999999999876 899999999999999876553 11110
Q ss_pred CCcccCCCCCCCCCCCCCCCceEEEEEcCCC-CEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeec-------CCCCC
Q 000270 374 SDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS-------GHEND 445 (1749)
Q Consensus 374 ~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG-~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~-------gH~~~ 445 (1749)
....+..+++.|-... ...++ +..+..+.+.+... ...+..+. .....
T Consensus 436 ---------------~~e~g~Plsvd~~ss~~a~~~~---s~~~~~~~~~~~ev------~s~~~~~~s~~~~~~~~~~~ 491 (577)
T KOG0642|consen 436 ---------------PKEHGYPLSVDRTSSRPAHSLA---SFRFGYTSIDDMEV------VSDLLIFESSASPGPRRYPQ 491 (577)
T ss_pred ---------------ccccCCcceEeeccchhHhhhh---hcccccccchhhhh------hhheeeccccCCCcccccCc
Confidence 1122334455553322 12222 22233333221111 00111111 11234
Q ss_pred eEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCC
Q 000270 446 VNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPP 525 (1749)
Q Consensus 446 V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~ 525 (1749)
+.-|.+.|.. .+.+++..|+.|+++|..++
T Consensus 492 in~vVs~~~~--------------------------~~~~~~hed~~Ir~~dn~~~------------------------ 521 (577)
T KOG0642|consen 492 INKVVSHPTA--------------------------DITFTAHEDRSIRFFDNKTG------------------------ 521 (577)
T ss_pred cceEEecCCC--------------------------CeeEecccCCceeccccccc------------------------
Confidence 5566666665 78999999999999998763
Q ss_pred CCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCC
Q 000270 526 QPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHT 582 (1749)
Q Consensus 526 ~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~ 582 (1749)
..+.....|...++++++.|+|-+|++++.||.|++|.+....++.....|.
T Consensus 522 -----~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 522 -----KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred -----ccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 3445566788899999999999999999999999999998888888777664
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.6e-15 Score=185.26 Aligned_cols=289 Identities=17% Similarity=0.273 Sum_probs=210.0
Q ss_pred CEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccC---CCCeEEEEEcC--CCcEEEEEeCCCeEEEEEC-CCC-
Q 000270 245 AVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGH---EGDITDLAVSS--NNALVASASNDCIIRVWRL-PDG- 317 (1749)
Q Consensus 245 ~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gH---s~~VtsLafSP--Dg~lLASGS~DGtIrVWDl-~tg- 317 (1749)
.-..+.|+|-...++++.+.-.|+|||.+.++++..|..+ ...|+.|.+-. |..+|++|+.||.|+||+- .++
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 4556788888888999987789999999999998887654 45788998876 5669999999999999962 222
Q ss_pred ---ceEEEecCC-------CCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCC
Q 000270 318 ---LPISVLRGH-------TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSS 387 (1749)
Q Consensus 318 ---k~l~tL~gH-------s~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s 387 (1749)
+.+....+- .+.-.-+.|-...+ +|+++|.-..|+|||+....+...+..
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G---~Ll~tGd~r~IRIWDa~~E~~~~diP~----------------- 1205 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG---HLLVTGDVRSIRIWDAHKEQVVADIPY----------------- 1205 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCC---eEEecCCeeEEEEEecccceeEeeccc-----------------
Confidence 333332221 11113356665554 677777789999999987766554422
Q ss_pred CCCCCCceEEEEEcC-CCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCC--eEEEEEcCCCccccccccc
Q 000270 388 AGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEND--VNYVQFSGCAVASRFSLAD 464 (1749)
Q Consensus 388 ~~~h~~~Vt~LafSP-DG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~--V~sVafSpdg~as~~s~~~ 464 (1749)
+....|+++.-+. .|..|++|..||.|++||.+... +...+...+.|... |..+.+.+.|.
T Consensus 1206 --~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~------~ds~v~~~R~h~~~~~Iv~~slq~~G~-------- 1269 (1387)
T KOG1517|consen 1206 --GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAP------PDSLVCVYREHNDVEPIVHLSLQRQGL-------- 1269 (1387)
T ss_pred --CCCccceeecccccCCceEEEeecCCceEEeecccCC------ccccceeecccCCcccceeEEeecCCC--------
Confidence 1233466665443 57999999999999999997643 23456778889887 99999988762
Q ss_pred CCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCC---CC
Q 000270 465 SSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT---PR 541 (1749)
Q Consensus 465 ~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h---~~ 541 (1749)
..|++|+.||.|++||++...... ...+..| ..
T Consensus 1270 -----------------~elvSgs~~G~I~~~DlR~~~~e~---------------------------~~~iv~~~~yGs 1305 (1387)
T KOG1517|consen 1270 -----------------GELVSGSQDGDIQLLDLRMSSKET---------------------------FLTIVAHWEYGS 1305 (1387)
T ss_pred -----------------cceeeeccCCeEEEEecccCcccc---------------------------cceeeeccccCc
Confidence 479999999999999998621000 0011111 12
Q ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecC-------CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 000270 542 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTG-------HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1749)
Q Consensus 542 ~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~g-------H~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~t 614 (1749)
..+++..++....||+|+. +.|+||++. |+.+..+.. ..+.+.+++||| -.-++|+|..|.+|.||....
T Consensus 1306 ~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1306 ALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred cceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecCC
Confidence 4899999999999999998 999999984 555544432 245689999999 566788889999999998866
Q ss_pred Cc
Q 000270 615 GI 616 (1749)
Q Consensus 615 Gk 616 (1749)
+.
T Consensus 1383 ~~ 1384 (1387)
T KOG1517|consen 1383 PR 1384 (1387)
T ss_pred cC
Confidence 54
|
|
| >cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-16 Score=159.51 Aligned_cols=93 Identities=17% Similarity=0.240 Sum_probs=83.4
Q ss_pred HHHHHHHhhcccccccccccccccc--cCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCCCH
Q 000270 1643 AFAKLEQSANRVQDQYGVQKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTD 1720 (1749)
Q Consensus 1643 ~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~~s~ 1720 (1749)
.+..+++.+..+..+|+|..|+... ..|+||++|++||||+||++||+++.|.++++|..|+++||.||.+||++++.
T Consensus 4 ~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~s~ 83 (99)
T cd05506 4 QCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPGND 83 (99)
T ss_pred HHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 3444555555678899999998755 67999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 000270 1721 LSTKIKRLSDLVTRT 1735 (1749)
Q Consensus 1721 ~~~~a~~l~~~~~~~ 1735 (1749)
++++|..|++.|.++
T Consensus 84 i~~~a~~l~~~fe~~ 98 (99)
T cd05506 84 VHTMAKELLKIFETR 98 (99)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999865
|
Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-15 Score=166.12 Aligned_cols=279 Identities=20% Similarity=0.264 Sum_probs=199.0
Q ss_pred EEEccCCCCEEEEEECCC-CCEEEEEeCC-------cEEEEEECCC---------CeEEEEEc-cCCCCeEEEEEcCCCc
Q 000270 237 KRVRGHRNAVYCAIFDRS-GRYVITGSDD-------RLVKIWSMET---------AYCLASCR-GHEGDITDLAVSSNNA 298 (1749)
Q Consensus 237 ~tL~GH~~~Vt~VaFSPD-G~~LATGS~D-------GtVrIWDl~T---------g~~l~tL~-gHs~~VtsLafSPDg~ 298 (1749)
+.|..|.+.|..++-+|- .++|+|+..+ ..+.||.+.. .+++..|. .+-+.|.|+.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 457778899999999995 4566665431 2578998853 23444454 4567999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCce-EEEec-----CCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCC
Q 000270 299 LVASASNDCIIRVWRLPDGLP-ISVLR-----GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR 372 (1749)
Q Consensus 299 lLASGS~DGtIrVWDl~tgk~-l~tL~-----gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~ 372 (1749)
.||+-. |..|.+|++..+.. ++.+. +|....++-+|+|...+ +.++ ...|+++..||+++..+...+.
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg-nqv~-tt~d~tl~~~D~RT~~~~~sI~--- 210 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG-NQVA-TTSDSTLQFWDLRTMKKNNSIE--- 210 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCcc-ceEE-EeCCCcEEEEEccchhhhcchh---
Confidence 988876 78999999988755 34332 35667888999995432 2444 4567899999999887665552
Q ss_pred CCCcccCCCCCCCCCCCCCCCceEEEEEcCCCC-EEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEE
Q 000270 373 PSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT-VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF 451 (1749)
Q Consensus 373 ~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~-~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVaf 451 (1749)
..|...|..+.|+|+.+ +||+|+.||.|+|||.+.. ...+..+.+|...|++|.|
T Consensus 211 ----------------dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t--------k~pv~el~~HsHWvW~VRf 266 (370)
T KOG1007|consen 211 ----------------DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT--------KFPVQELPGHSHWVWAVRF 266 (370)
T ss_pred ----------------hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC--------CccccccCCCceEEEEEEe
Confidence 46888899999999876 6888999999999999763 4567889999999999999
Q ss_pred cCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCC
Q 000270 452 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGG 531 (1749)
Q Consensus 452 Spdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~ 531 (1749)
.|.- .++|++|+.|..|.+|...+-.....+..-................+...+
T Consensus 267 n~~h-------------------------dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg 321 (370)
T KOG1007|consen 267 NPEH-------------------------DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDG 321 (370)
T ss_pred cCcc-------------------------ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccc
Confidence 9854 368999999999999987642211111000000000000001111234456
Q ss_pred CcccccCCCCCeeEEEEcCCCCE-EEEEeCCCeEEEEECC
Q 000270 532 PRQRILPTPRGVNMIVWSLDNRF-VLAAIMDCRICVWNAA 570 (1749)
Q Consensus 532 ~i~~l~~h~~~VtsVafSPDG~~-LATGs~DGtI~VWDl~ 570 (1749)
.+.++..|...|.+++||.-..+ +|+-+.||++.|=.+.
T Consensus 322 ~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 322 QLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 67788899999999999986665 5667899999886654
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-15 Score=179.13 Aligned_cols=235 Identities=17% Similarity=0.287 Sum_probs=185.6
Q ss_pred eEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEEC
Q 000270 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314 (1749)
Q Consensus 235 ~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl 314 (1749)
.+..+.|. .-+||+......|+++|+..++|+|||+....+.+.+++|...|+++.+.....+||+++..|.|.|..+
T Consensus 73 ~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~ 150 (673)
T KOG4378|consen 73 RVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGT 150 (673)
T ss_pred eeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEec
Confidence 34444444 3445555555589999999999999999988888889999999999999999999999999999999999
Q ss_pred CCCceEEEecCC-CCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCC
Q 000270 315 PDGLPISVLRGH-TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1749)
Q Consensus 315 ~tgk~l~tL~gH-s~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~ 393 (1749)
.++.....|... ...|.-+.|++... ++|.+++.+|.|.+||+......... ...|..
T Consensus 151 ~t~~~tt~f~~~sgqsvRll~ys~skr--~lL~~asd~G~VtlwDv~g~sp~~~~-------------------~~~HsA 209 (673)
T KOG4378|consen 151 KTKQKTTTFTIDSGQSVRLLRYSPSKR--FLLSIASDKGAVTLWDVQGMSPIFHA-------------------SEAHSA 209 (673)
T ss_pred ccCccccceecCCCCeEEEeecccccc--eeeEeeccCCeEEEEeccCCCcccch-------------------hhhccC
Confidence 999877777644 34556899999865 57899999999999999765433222 245788
Q ss_pred ceEEEEEcCC-CCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCC
Q 000270 394 QIFCCAFNAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472 (1749)
Q Consensus 394 ~Vt~LafSPD-G~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~ 472 (1749)
+...|||+|. ..+|++.+.|..|.+||+.... ... ......+...|+|.++|
T Consensus 210 P~~gicfspsne~l~vsVG~Dkki~~yD~~s~~---------s~~-~l~y~~Plstvaf~~~G----------------- 262 (673)
T KOG4378|consen 210 PCRGICFSPSNEALLVSVGYDKKINIYDIRSQA---------STD-RLTYSHPLSTVAFSECG----------------- 262 (673)
T ss_pred CcCcceecCCccceEEEecccceEEEeeccccc---------ccc-eeeecCCcceeeecCCc-----------------
Confidence 8889999994 5688899999999999996421 111 12345678899999988
Q ss_pred cccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCC
Q 000270 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN 552 (1749)
Q Consensus 473 ~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG 552 (1749)
.+|+.|...|.|..||++..+ .++..+..|...|++++|-+.-
T Consensus 263 ---------~~L~aG~s~G~~i~YD~R~~k----------------------------~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 263 ---------TYLCAGNSKGELIAYDMRSTK----------------------------APVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ---------eEEEeecCCceEEEEecccCC----------------------------CCceEeeecccceeEEEeeecc
Confidence 699999999999999999632 4556677888899999998765
Q ss_pred CEEEE
Q 000270 553 RFVLA 557 (1749)
Q Consensus 553 ~~LAT 557 (1749)
.|++
T Consensus 306 -tvlt 309 (673)
T KOG4378|consen 306 -TVLT 309 (673)
T ss_pred -eeee
Confidence 4443
|
|
| >cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-16 Score=158.27 Aligned_cols=83 Identities=14% Similarity=0.203 Sum_probs=76.3
Q ss_pred ccccccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHH
Q 000270 1653 RVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLV 1732 (1749)
Q Consensus 1653 ~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~~s~~~~~a~~l~~~~ 1732 (1749)
+..-+-.|..++.....||||++|+.||||+||++||+++.|.++++|..|+++||.||++||+++|+++++|..|+++|
T Consensus 20 gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~le~~~ 99 (103)
T cd05518 20 GRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYNEEGSQVYEDANILEKVL 99 (103)
T ss_pred CCcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 34445567778888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 000270 1733 TRT 1735 (1749)
Q Consensus 1733 ~~~ 1735 (1749)
..+
T Consensus 100 ~~~ 102 (103)
T cd05518 100 KEK 102 (103)
T ss_pred Hhc
Confidence 764
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.2e-14 Score=176.43 Aligned_cols=352 Identities=17% Similarity=0.208 Sum_probs=241.5
Q ss_pred cccccceEEEEccCCCCEEEEEECCCC---CEEEEEeCCcEEEEEECCCCeEEEEE------------------------
Q 000270 229 MVQKMQNIKRVRGHRNAVYCAIFDRSG---RYVITGSDDRLVKIWSMETAYCLASC------------------------ 281 (1749)
Q Consensus 229 ~~~~~~~i~tL~GH~~~Vt~VaFSPDG---~~LATGS~DGtVrIWDl~Tg~~l~tL------------------------ 281 (1749)
...+..+++.|.+|...++.+.+.|.. .++++++.||+|++||...+.+++++
T Consensus 43 S~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~ 122 (792)
T KOG1963|consen 43 STATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYV 122 (792)
T ss_pred ecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEe
Confidence 455678888999999999999998854 47889999999999998765444322
Q ss_pred -------------------------------------------------------------------------------c
Q 000270 282 -------------------------------------------------------------------------------R 282 (1749)
Q Consensus 282 -------------------------------------------------------------------------------~ 282 (1749)
.
T Consensus 123 s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~ 202 (792)
T KOG1963|consen 123 SVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITV 202 (792)
T ss_pred ecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhh
Confidence 0
Q ss_pred cCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCC--C--ceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEE
Q 000270 283 GHEGDITDLAVSSNNALVASASNDCIIRVWRLPD--G--LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358 (1749)
Q Consensus 283 gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~t--g--k~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWD 358 (1749)
.|.-.+++.++||+++++|+|..||.|.||.--. + .....+.-|...|++++|+++|. +|++|+..|.+.+|.
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~---~LlSGG~E~VLv~Wq 279 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGA---YLLSGGREGVLVLWQ 279 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCc---eEeecccceEEEEEe
Confidence 1344467899999999999999999999996322 2 23455667899999999999998 999999999999999
Q ss_pred cCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcce--
Q 000270 359 ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI-- 436 (1749)
Q Consensus 359 l~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i-- 436 (1749)
+.+++ +.+ + ..-...|..+.+|||+.+.++...|..|.+....+.......+.....
T Consensus 280 ~~T~~--kqf-L------------------PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~ 338 (792)
T KOG1963|consen 280 LETGK--KQF-L------------------PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTP 338 (792)
T ss_pred ecCCC--ccc-c------------------cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCc
Confidence 99886 222 1 123567999999999999999999999999887443211111100000
Q ss_pred eeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCcccccccccccc
Q 000270 437 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 516 (1749)
Q Consensus 437 ~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l 516 (1749)
..-....+-.+.++++|.. +.++..+..|.|.+||+.+...+.........+.
T Consensus 339 ~~k~~~~~l~t~~~idpr~--------------------------~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~- 391 (792)
T KOG1963|consen 339 STKTRPQSLTTGVSIDPRT--------------------------NSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYS- 391 (792)
T ss_pred cccccccccceeEEEcCCC--------------------------CceeecCCCceEEEEeccccceeeeEEEEeeccc-
Confidence 0011223445556666632 6788889999999999987654322221111110
Q ss_pred CCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEe--------CC--CeEEEEECCCCc----eEE-EecCC
Q 000270 517 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI--------MD--CRICVWNAADGS----LVH-SLTGH 581 (1749)
Q Consensus 517 ~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs--------~D--GtI~VWDl~tgk----lv~-tL~gH 581 (1749)
.+. ..+..++++++.+..|.+++|+- .| -.+++|-..... +.. ....|
T Consensus 392 ------------~~~-----~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH 454 (792)
T KOG1963|consen 392 ------------DGD-----VNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPH 454 (792)
T ss_pred ------------CCc-----ceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCC
Confidence 000 12445689999999999999874 33 357889764433 222 23478
Q ss_pred CCCeEEEEEcCCCCc-EEEEEeCCCcEEEEeCCCCceE------------EEEe-----eeecc-CCCEEEEEcCCCeEE
Q 000270 582 TESTYVLDVHPFNPR-IAMSAGYDGKTIVWDIWEGIPI------------RIYE-----ISRFR-DGASIILSDDVGQLY 642 (1749)
Q Consensus 582 ~~~VtsLafSPdd~r-lLaSgs~DGtIrVWDl~tGk~l------------~tl~-----~~~~s-DG~~LAsgd~DG~I~ 642 (1749)
...+.+.+|.+.-.. .++++|.||.++||-+...+.+ ..|. ...|+ ||..||++ .++.|.
T Consensus 455 ~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s-~~~~It 533 (792)
T KOG1963|consen 455 GNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVS-FDDTIT 533 (792)
T ss_pred CceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEe-cCCEEE
Confidence 877777776553333 7889999999999988332221 2121 01233 88666655 557999
Q ss_pred EEECCCC
Q 000270 643 ILNTGQG 649 (1749)
Q Consensus 643 IWdl~tG 649 (1749)
|||..+.
T Consensus 534 iwd~~~~ 540 (792)
T KOG1963|consen 534 IWDYDTK 540 (792)
T ss_pred EecCCCh
Confidence 9998773
|
|
| >cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.4e-16 Score=158.36 Aligned_cols=83 Identities=17% Similarity=0.231 Sum_probs=78.9
Q ss_pred ccccccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHH
Q 000270 1653 RVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLV 1732 (1749)
Q Consensus 1653 ~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~~s~~~~~a~~l~~~~ 1732 (1749)
++.-++.|..++.....|+||++|++||||+||++||+++.|.++++|..|+++||.||++||++++.++.+|..|+++|
T Consensus 20 ~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~i~~~A~~l~~~f 99 (103)
T cd05519 20 GRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANARTYNQEGSIVYEDAVEMEKAF 99 (103)
T ss_pred CCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 44557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 000270 1733 TRT 1735 (1749)
Q Consensus 1733 ~~~ 1735 (1749)
.++
T Consensus 100 ~~~ 102 (103)
T cd05519 100 KKK 102 (103)
T ss_pred HHh
Confidence 875
|
SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-16 Score=157.83 Aligned_cols=83 Identities=22% Similarity=0.410 Sum_probs=78.8
Q ss_pred ccccccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHH
Q 000270 1653 RVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLV 1732 (1749)
Q Consensus 1653 ~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~~s~~~~~a~~l~~~~ 1732 (1749)
+..-+++|..++.....||||++|++||||+||++||+++.|.++++|..|+++||.||.+||+++|.+++.|..|++.|
T Consensus 22 g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~~yn~~~S~i~~~A~~L~~~f 101 (106)
T cd05525 22 GQSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEKYYGRKSPIGRDVCRLRKAY 101 (106)
T ss_pred CCcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 000270 1733 TRT 1735 (1749)
Q Consensus 1733 ~~~ 1735 (1749)
.+.
T Consensus 102 ~~~ 104 (106)
T cd05525 102 YQA 104 (106)
T ss_pred HHc
Confidence 763
|
ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-14 Score=179.17 Aligned_cols=285 Identities=16% Similarity=0.204 Sum_probs=193.5
Q ss_pred CcEEEEEECCCC-eEEEEEccCCCCeEEEEEcC-CCcEEEEEeCCCeEEEEECCCCce--EEE----ecCCCCceEEEEe
Q 000270 264 DRLVKIWSMETA-YCLASCRGHEGDITDLAVSS-NNALVASASNDCIIRVWRLPDGLP--ISV----LRGHTAAVTAIAF 335 (1749)
Q Consensus 264 DGtVrIWDl~Tg-~~l~tL~gHs~~VtsLafSP-Dg~lLASGS~DGtIrVWDl~tgk~--l~t----L~gHs~~VtsIaF 335 (1749)
++.+.||++... ..-..+. -...|++++|+| +..+||.|+.+|.|.+||+..+.. ... ...|..+|+.+.|
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred CceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 458999999876 3333333 478899999999 677888999999999999987654 222 2368899999999
Q ss_pred ccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcC-CCCEEEEecCCC
Q 000270 336 SPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTVFVTGSSDT 414 (1749)
Q Consensus 336 SPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSP-DG~~LaSGs~DG 414 (1749)
..+... .-|++++.||.|+.|+++.-........ ................+++++|.+ +-..|++|+.+|
T Consensus 300 ~~~~~~-~~f~s~ssDG~i~~W~~~~l~~P~e~~~--------~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G 370 (555)
T KOG1587|consen 300 LQNEHN-TEFFSLSSDGSICSWDTDMLSLPVEGLL--------LESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEG 370 (555)
T ss_pred eccCCC-CceEEEecCCcEeeeeccccccchhhcc--------cccccccccccccccceeeEeeccCCCceEEEEcCCc
Confidence 887553 4689999999999998765433111110 011110111123455689999988 456899999999
Q ss_pred cEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEE
Q 000270 415 LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAI 494 (1749)
Q Consensus 415 tVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIr 494 (1749)
.|..-.-..... ......+....+..|.+.|+++.++|-. +..|++++ |.+|+
T Consensus 371 ~v~~~~r~g~~~-~~~~~~~~~~~~~~h~g~v~~v~~nPF~-------------------------~k~fls~g-DW~vr 423 (555)
T KOG1587|consen 371 KVYKGCRKGYTP-APEVSYKGHSTFITHIGPVYAVSRNPFY-------------------------PKNFLSVG-DWTVR 423 (555)
T ss_pred EEEEEeccCCcc-cccccccccccccccCcceEeeecCCCc-------------------------cceeeeec-cceeE
Confidence 987633321111 0001122344667789999999999854 45666666 99999
Q ss_pred EEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCC-EEEEEeCCCeEEEEECCC--
Q 000270 495 IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR-FVLAAIMDCRICVWNAAD-- 571 (1749)
Q Consensus 495 IWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~-~LATGs~DGtI~VWDl~t-- 571 (1749)
||.... ...++..+..+...|++++|||--. .+|++..||.|.|||+..
T Consensus 424 iWs~~~----------------------------~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~ 475 (555)
T KOG1587|consen 424 IWSEDV----------------------------IASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD 475 (555)
T ss_pred eccccC----------------------------CCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc
Confidence 997552 1233344445556699999999764 666777899999999954
Q ss_pred CceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 000270 572 GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1749)
Q Consensus 572 gklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~t 614 (1749)
-.++.+..-+....+.+.|++ .+++|+.|...|+|.+|++..
T Consensus 476 ~~Pv~s~~~~~~~l~~~~~s~-~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 476 EEPVLSQKVCSPALTRVRWSP-NGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cCCcccccccccccceeecCC-CCcEEEEecCCCcEEEEEcCc
Confidence 344444444455556666666 677888888888888888743
|
|
| >cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-16 Score=160.42 Aligned_cols=104 Identities=12% Similarity=0.218 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHhhc--ccccccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhc
Q 000270 1638 NKLLSAFAKLEQSAN--RVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYF 1715 (1749)
Q Consensus 1638 ~kl~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN 1715 (1749)
..+..++..+.+... +..-+..|..++.....|+||++|++||||+||++||+++.|.++++|..||++||+||.+||
T Consensus 5 ~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN 84 (113)
T cd05524 5 AVCQELYDTIRNYKSEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKAYY 84 (113)
T ss_pred HHHHHHHHHHHhhcccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 344455555433211 122234566777788899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCC
Q 000270 1716 GRNTDLSTKIKRLSDLVTRTLSSLKA 1741 (1749)
Q Consensus 1716 ~~~s~~~~~a~~l~~~~~~~l~~~~~ 1741 (1749)
+++|.+++.|..|+++|.+.++++..
T Consensus 85 ~~~s~~~~~A~~L~~~f~~~~~~~~~ 110 (113)
T cd05524 85 KPDSPEHKDACKLWELFLSARNEVLS 110 (113)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999887754
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.7e-16 Score=156.85 Aligned_cols=97 Identities=15% Similarity=0.246 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHhhcccccccccccccccc--cCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhc
Q 000270 1638 NKLLSAFAKLEQSANRVQDQYGVQKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYF 1715 (1749)
Q Consensus 1638 ~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN 1715 (1749)
..+..++..|... .....+++|..|+... ..|+||++|++||||+||++||+++.|+++++|..|+++||+||++||
T Consensus 3 ~~c~~il~~l~~~-~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn 81 (102)
T cd05498 3 KFCSGILKELFSK-KHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYN 81 (102)
T ss_pred hHHHHHHHHHHhC-CCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4566666666553 2236788999887754 579999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 000270 1716 GRNTDLSTKIKRLSDLVTRT 1735 (1749)
Q Consensus 1716 ~~~s~~~~~a~~l~~~~~~~ 1735 (1749)
++++.++.+|+.|++.|.++
T Consensus 82 ~~~s~i~~~a~~l~~~fe~~ 101 (102)
T cd05498 82 PPDHPVHAMARKLQDVFEDR 101 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999875
|
Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-15 Score=180.94 Aligned_cols=275 Identities=19% Similarity=0.201 Sum_probs=192.4
Q ss_pred EEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCC--------CceEEEecCCCCceEEEEeccCCCcceEEEeecC
Q 000270 279 ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPD--------GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD 350 (1749)
Q Consensus 279 ~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~t--------gk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~ 350 (1749)
.++..|...|+.++|.+-...|++++.||+|.+|+++. -+++.++++|.++|.|+++.+.+. .+++|+.
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~---~~ysgg~ 364 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE---HCYSGGI 364 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce---EEEeecc
Confidence 36778999999999999999999999999999999932 257889999999999999999987 8999999
Q ss_pred CCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCC
Q 000270 351 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD 430 (1749)
Q Consensus 351 DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~ 430 (1749)
||+|+.|++....-.... -..........+|.+.|+.+++|+....|++++.||+|++|+......
T Consensus 365 Dg~I~~w~~p~n~dp~ds----------~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~---- 430 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQDPDDS----------YDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP---- 430 (577)
T ss_pred CceeeeeccCCCCCcccc----------cCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc----
Confidence 999999987522111000 111222344578999999999999999999999999999999854221
Q ss_pred CCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCcccccc
Q 000270 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1749)
Q Consensus 431 ~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~ 510 (1749)
+......-.+.-.++.+..... ...++...-+.-.++++..........
T Consensus 431 ----~~f~~~~e~g~Plsvd~~ss~~-------------------------a~~~~s~~~~~~~~~~~ev~s~~~~~~-- 479 (577)
T KOG0642|consen 431 ----CTFGEPKEHGYPLSVDRTSSRP-------------------------AHSLASFRFGYTSIDDMEVVSDLLIFE-- 479 (577)
T ss_pred ----cccCCccccCCcceEeeccchh-------------------------Hhhhhhcccccccchhhhhhhheeecc--
Confidence 1111111112223333332110 111111112222222222211000000
Q ss_pred ccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEE
Q 000270 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDV 590 (1749)
Q Consensus 511 ~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLaf 590 (1749)
. ... ........++.+.+.|.+.+.+++..|+.|+++|..+|.+++....|...|+++++
T Consensus 480 --------------s---~~~---~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai 539 (577)
T KOG0642|consen 480 --------------S---SAS---PGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAI 539 (577)
T ss_pred --------------c---cCC---CcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceee
Confidence 0 000 00011235788999999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCceEEEEe
Q 000270 591 HPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE 622 (1749)
Q Consensus 591 SPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~ 622 (1749)
.| ++-+|++++.||.|++|.+....++....
T Consensus 540 ~~-ng~~l~s~s~d~sv~l~kld~k~~~~es~ 570 (577)
T KOG0642|consen 540 DP-NGPYLMSGSHDGSVRLWKLDVKTCVLEST 570 (577)
T ss_pred cC-CCceEEeecCCceeehhhccchheeeccc
Confidence 99 77888999999999999997776665443
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-13 Score=170.67 Aligned_cols=316 Identities=20% Similarity=0.330 Sum_probs=209.9
Q ss_pred EccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCC---cEEEEEeCCCeEEEEECC
Q 000270 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNN---ALVASASNDCIIRVWRLP 315 (1749)
Q Consensus 239 L~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg---~lLASGS~DGtIrVWDl~ 315 (1749)
|-|-...-....||+|+++++.... ..|+||.+.||.++..+.+|..+++.+.+.|.. .++.+++.||.|++||..
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCTG-NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred eccccceecccccccCCcEEEEeeC-CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 4444333445569999999887764 589999999999999999999999999998854 477899999999999999
Q ss_pred CCceEEEecCCCCceEEEEeccCCCcceEEE-eecCC------------CcEEEEEcCCC-----cccceeecCC-----
Q 000270 316 DGLPISVLRGHTAAVTAIAFSPRPGSVYQLL-SSSDD------------GTCRIWDARYS-----QFSPRIYIPR----- 372 (1749)
Q Consensus 316 tgk~l~tL~gHs~~VtsIaFSPdg~~~~~La-SgS~D------------GtIrIWDl~tg-----~~l~~l~~~~----- 372 (1749)
.+..+.++..+ ..+..+.+.|.--....++ .+..| ++++-+.+.+. ........+.
T Consensus 91 ~~~Llkt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~ 169 (792)
T KOG1963|consen 91 DGELLKTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDN 169 (792)
T ss_pred CcEEEEEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEc
Confidence 99988887633 2333333322100000011 11111 11111111110 0000000000
Q ss_pred CCCccc----------------CCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcce
Q 000270 373 PSDAVA----------------GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 436 (1749)
Q Consensus 373 ~~~~~~----------------g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i 436 (1749)
+..... .+..........|...++|.++||+++++|+|..||.|.+|.--.. .......
T Consensus 170 ~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~-----~~~~~t~ 244 (792)
T KOG1963|consen 170 NSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS-----SDDSETC 244 (792)
T ss_pred CCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc-----ccccccc
Confidence 000000 0111112223345566899999999999999999999999976321 1122345
Q ss_pred eeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCcccccccccccc
Q 000270 437 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 516 (1749)
Q Consensus 437 ~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l 516 (1749)
..+.-|...|.+++|+++| .+|++|+..|.+.+|.+.+++.
T Consensus 245 t~lHWH~~~V~~L~fS~~G--------------------------~~LlSGG~E~VLv~Wq~~T~~k------------- 285 (792)
T KOG1963|consen 245 TLLHWHHDEVNSLSFSSDG--------------------------AYLLSGGREGVLVLWQLETGKK------------- 285 (792)
T ss_pred eEEEecccccceeEEecCC--------------------------ceEeecccceEEEEEeecCCCc-------------
Confidence 6688999999999999998 7999999999999999887441
Q ss_pred CCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCC-----------CCCe
Q 000270 517 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH-----------TEST 585 (1749)
Q Consensus 517 ~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH-----------~~~V 585 (1749)
+-+.--...|..+.+|||+.+.++...|+.|.+....+.....++.|- .+-.
T Consensus 286 -----------------qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~ 348 (792)
T KOG1963|consen 286 -----------------QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLT 348 (792)
T ss_pred -----------------ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccc
Confidence 112224567999999999999999999999999998776655544432 3346
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceE
Q 000270 586 YVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618 (1749)
Q Consensus 586 tsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l 618 (1749)
+.++++| ....++-.+.-|.|.+||+-+...+
T Consensus 349 t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i 380 (792)
T KOG1963|consen 349 TGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTI 380 (792)
T ss_pred eeEEEcC-CCCceeecCCCceEEEEecccccee
Confidence 7788888 5556666778888888887554443
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-14 Score=181.43 Aligned_cols=321 Identities=16% Similarity=0.194 Sum_probs=211.9
Q ss_pred cccccceEEEEccCCCCEEEEEECCCC-CEEEEEeCCcEEEEEECCC-------CeEEEEEccCCCCeEEEEEcCCCcEE
Q 000270 229 MVQKMQNIKRVRGHRNAVYCAIFDRSG-RYVITGSDDRLVKIWSMET-------AYCLASCRGHEGDITDLAVSSNNALV 300 (1749)
Q Consensus 229 ~~~~~~~i~tL~GH~~~Vt~VaFSPDG-~~LATGS~DGtVrIWDl~T-------g~~l~tL~gHs~~VtsLafSPDg~lL 300 (1749)
+-.++..+..|..|...|..++.++.. .+++|||.||+|+||+... .+...++.--...+.++.+.+.+..+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 355678899999999999999988755 9999999999999999853 12233344357889999999999999
Q ss_pred EEEeCCCeEEEEECCCC--c-----eEEEe--cCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecC
Q 000270 301 ASASNDCIIRVWRLPDG--L-----PISVL--RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIP 371 (1749)
Q Consensus 301 ASGS~DGtIrVWDl~tg--k-----~l~tL--~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~ 371 (1749)
|.++.||.|++.++... . +.... ......|...+|.....+ +.|+.+..-+.|..||++......++..
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S-~~lvy~T~~~~iv~~D~r~~~~~w~lk~- 1191 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQS-HVLVYATDLSRIVSWDTRMRHDAWRLKN- 1191 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccc-eeEEEEEeccceEEecchhhhhHHhhhc-
Confidence 99999999999998752 1 11111 122233444556555544 4788888999999999987765555432
Q ss_pred CCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceee-ecCCCCCeEEEE
Q 000270 372 RPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDV-LSGHENDVNYVQ 450 (1749)
Q Consensus 372 ~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~-l~gH~~~V~sVa 450 (1749)
....+.|++++.+|.+.+++.|+..|.+.+||++-.. .+.. -.++..++..+.
T Consensus 1192 -----------------~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~---------~i~sw~~P~~~~i~~v~ 1245 (1431)
T KOG1240|consen 1192 -----------------QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRV---------PILSWEHPARAPIRHVW 1245 (1431)
T ss_pred -----------------CccccceeEEEecCCceEEEEecCCceEEEEEeecCc---------eeecccCcccCCcceEE
Confidence 3456779999999999999999999999999996421 2222 123446777777
Q ss_pred EcCCCcccccccccCCCCCCCCcccccccCCCEE-EEEe-CCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCC
Q 000270 451 FSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI-VTCS-RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPP 528 (1749)
Q Consensus 451 fSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~L-aSgS-~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~ 528 (1749)
.++...- .... .+++ ..+.|.+|++.++.+.... |... ..+.+....+
T Consensus 1246 ~~~~~~~-----------------------~S~~vs~~~~~~nevs~wn~~~g~~~~vl--~~s~-----~~p~ls~~~P 1295 (1431)
T KOG1240|consen 1246 LCPTYPQ-----------------------ESVSVSAGSSSNNEVSTWNMETGLRQTVL--WASD-----GAPILSYALP 1295 (1431)
T ss_pred eeccCCC-----------------------CceEEEecccCCCceeeeecccCcceEEE--EcCC-----CCcchhhhcc
Confidence 7764300 0233 3344 5788999999987543322 2220 0011111111
Q ss_pred CCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceE---------------------------------
Q 000270 529 RGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLV--------------------------------- 575 (1749)
Q Consensus 529 ~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv--------------------------------- 575 (1749)
.... -.++.-.....++.--+.++.+|+.|..|+.||.......
T Consensus 1296 s~~~---~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i 1372 (1431)
T KOG1240|consen 1296 SNDA---RKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFI 1372 (1431)
T ss_pred cccC---CCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhh
Confidence 1100 0022222333445555678999999999999997542111
Q ss_pred ---------------EEe--------cCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 000270 576 ---------------HSL--------TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVW 610 (1749)
Q Consensus 576 ---------------~tL--------~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVW 610 (1749)
..+ ..|...|+++++......+|++++.||.|+||
T Consensus 1373 ~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiW 1430 (1431)
T KOG1240|consen 1373 IYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIW 1430 (1431)
T ss_pred hhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeec
Confidence 000 13566777777766556677778888888887
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-14 Score=165.08 Aligned_cols=273 Identities=17% Similarity=0.281 Sum_probs=198.6
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcc
Q 000270 298 ALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAV 377 (1749)
Q Consensus 298 ~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~ 377 (1749)
..+|++...|.|++||..+|+.+..++++...++.+.|.... .++.+.+|+.||+|++||++......++....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~d-s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~----- 114 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCD-SPHGVISCSSDGTVRLWDIRSQAESARISWTQ----- 114 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCC-CCCeeEEeccCCeEEEEEeecchhhhheeccC-----
Confidence 578888889999999999999999999999999999999864 34689999999999999999877666553211
Q ss_pred cCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecC----CCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcC
Q 000270 378 AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS----DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSG 453 (1749)
Q Consensus 378 ~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~----DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSp 453 (1749)
.......|++..-.+..+++|.. +-.|.+||++.... + .-.-...|.+.|++|+|+|
T Consensus 115 ------------~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq-----~--l~~~~eSH~DDVT~lrFHP 175 (376)
T KOG1188|consen 115 ------------QSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQ-----L--LRQLNESHNDDVTQLRFHP 175 (376)
T ss_pred ------------CCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccc-----h--hhhhhhhccCcceeEEecC
Confidence 11345778887777888888864 67899999986321 1 1223468999999999999
Q ss_pred CCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCc
Q 000270 454 CAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR 533 (1749)
Q Consensus 454 dg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i 533 (1749)
.. +++|++||.||.|.|||+.... ....+
T Consensus 176 ~~-------------------------pnlLlSGSvDGLvnlfD~~~d~--------------------------EeDaL 204 (376)
T KOG1188|consen 176 SD-------------------------PNLLLSGSVDGLVNLFDTKKDN--------------------------EEDAL 204 (376)
T ss_pred CC-------------------------CCeEEeecccceEEeeecCCCc--------------------------chhhH
Confidence 76 5899999999999999987421 12333
Q ss_pred ccccCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEEECCCCceEEEecCCC----------CCeEEEE-EcCCCCcEEEEE
Q 000270 534 QRILPTPRGVNMIVWSLDN-RFVLAAIMDCRICVWNAADGSLVHSLTGHT----------ESTYVLD-VHPFNPRIAMSA 601 (1749)
Q Consensus 534 ~~l~~h~~~VtsVafSPDG-~~LATGs~DGtI~VWDl~tgklv~tL~gH~----------~~VtsLa-fSPdd~rlLaSg 601 (1749)
.....+...|.++.|..++ +.|.+-+...+..+|++..+.....+.... ..-+-|. .+|.+..+++.+
T Consensus 205 ~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~ 284 (376)
T KOG1188|consen 205 LHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALA 284 (376)
T ss_pred HHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEe
Confidence 4455677789999999887 558888999999999999887655443210 0001121 235445555555
Q ss_pred eC-CCcEEEEeC---CC---CceEEEEeeeec--------c-CCCEEEEEcCCCeEEEEEC
Q 000270 602 GY-DGKTIVWDI---WE---GIPIRIYEISRF--------R-DGASIILSDDVGQLYILNT 646 (1749)
Q Consensus 602 s~-DGtIrVWDl---~t---Gk~l~tl~~~~~--------s-DG~~LAsgd~DG~I~IWdl 646 (1749)
+. -+...++-+ .+ ++.+..+.+++- . .+.++.+|+.||.|.+|..
T Consensus 285 g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 285 GTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 55 455555433 33 344455555421 1 7889999999999999995
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-14 Score=161.49 Aligned_cols=263 Identities=19% Similarity=0.268 Sum_probs=184.3
Q ss_pred eEEEEEcCCCcEEEEEeCCCeEEEEECCCC-------ce-----EEEec-CCCCceEEEEeccC----CCcceEEEeecC
Q 000270 288 ITDLAVSSNNALVASASNDCIIRVWRLPDG-------LP-----ISVLR-GHTAAVTAIAFSPR----PGSVYQLLSSSD 350 (1749)
Q Consensus 288 VtsLafSPDg~lLASGS~DGtIrVWDl~tg-------k~-----l~tL~-gHs~~VtsIaFSPd----g~~~~~LaSgS~ 350 (1749)
...+.|+|||..|++-+.|..+.+|++... .. ..+++ .....|...+|-+. .....++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 346789999999999999999999998531 00 11111 23456777777521 112238899999
Q ss_pred CCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCC
Q 000270 351 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD 430 (1749)
Q Consensus 351 DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~ 430 (1749)
+.-|++||.-+|+....+..-... ..-....+++|+|||..|++| ....|++||+..+......
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~---------------de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~v 195 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQ---------------DEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPV 195 (406)
T ss_pred cCceeeeeccccccccchhhhhhH---------------HhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcc
Confidence 999999999998865544211000 011234689999999999977 4789999999432211111
Q ss_pred CCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCcccccc
Q 000270 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1749)
Q Consensus 431 ~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~ 510 (1749)
.+ .....-.+..+-|.+++|+|.. ...++.|+....+-|+.-..
T Consensus 196 y~-t~~~~k~gq~giisc~a~sP~~-------------------------~~~~a~gsY~q~~giy~~~~---------- 239 (406)
T KOG2919|consen 196 YT-TVTKGKFGQKGIISCFAFSPMD-------------------------SKTLAVGSYGQRVGIYNDDG---------- 239 (406)
T ss_pred hh-hhhcccccccceeeeeeccCCC-------------------------CcceeeecccceeeeEecCC----------
Confidence 00 0011123446788899999965 25889999988888875443
Q ss_pred ccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEe-CCCeEEEEECCC-CceEEEecCCCC-CeEE
Q 000270 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAAD-GSLVHSLTGHTE-STYV 587 (1749)
Q Consensus 511 ~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs-~DGtI~VWDl~t-gklv~tL~gH~~-~Vts 587 (1749)
..+...+.+|.++|+.++|.++|+.|++|+ .|-.|..||++. +.++..|..|.+ .-..
T Consensus 240 -------------------~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQR 300 (406)
T KOG2919|consen 240 -------------------RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQR 300 (406)
T ss_pred -------------------CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccce
Confidence 345666778999999999999999999998 477899999975 567778888866 3334
Q ss_pred EEE--cCCCCcEEEEEeCCCcEEEEeCCC-CceEEEEe
Q 000270 588 LDV--HPFNPRIAMSAGYDGKTIVWDIWE-GIPIRIYE 622 (1749)
Q Consensus 588 Laf--SPdd~rlLaSgs~DGtIrVWDl~t-Gk~l~tl~ 622 (1749)
|-| .| .+++|++|+.||.|++||+.+ |..+..+.
T Consensus 301 I~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~ 337 (406)
T KOG2919|consen 301 ILFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSVTG 337 (406)
T ss_pred EEEecCC-CCceeeccCCCccEEEEecCCCCCcccccc
Confidence 444 55 678999999999999999988 76555443
|
|
| >cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.2e-16 Score=155.91 Aligned_cols=83 Identities=17% Similarity=0.216 Sum_probs=76.8
Q ss_pred ccccccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHH
Q 000270 1653 RVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLV 1732 (1749)
Q Consensus 1653 ~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~~s~~~~~a~~l~~~~ 1732 (1749)
++.-+..|..++.....||||++|+.||||+||++||++ |.++++|..|+++||+||++||+++|.++++|..|+++|
T Consensus 21 g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~le~~~ 98 (106)
T cd05521 21 GIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARLYNTKGSVIYKYALILEKYI 98 (106)
T ss_pred CCCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 344456788888888999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 000270 1733 TRTLS 1737 (1749)
Q Consensus 1733 ~~~l~ 1737 (1749)
.++|.
T Consensus 99 ~~~~~ 103 (106)
T cd05521 99 NDVII 103 (106)
T ss_pred HHhhc
Confidence 98873
|
Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-13 Score=173.24 Aligned_cols=279 Identities=17% Similarity=0.233 Sum_probs=199.0
Q ss_pred CeEEEEECCCC-ceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCC
Q 000270 307 CIIRVWRLPDG-LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS 385 (1749)
Q Consensus 307 GtIrVWDl~tg-k~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~ 385 (1749)
+.+.||++... .+-..+. ....|+++.|+|... ++|+.|+.+|.|.+||++.+...... ...
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p--~ll~gG~y~GqV~lWD~~~~~~~~~s--------------~ls 284 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDP--NLLAGGCYNGQVVLWDLRKGSDTPPS--------------GLS 284 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCc--ceEEeeccCceEEEEEccCCCCCCCc--------------ccc
Confidence 47999999876 3434443 567899999999865 58999999999999999877642211 112
Q ss_pred CCCCCCCCceEEEEEcCCC--CEEEEecCCCcEEEEeCCCCCCCCCCCCCcce---eeecCCCCCeEEEEEcCCCccccc
Q 000270 386 SSAGPQSHQIFCCAFNANG--TVFVTGSSDTLARVWNACKPNTDDSDQPNHEI---DVLSGHENDVNYVQFSGCAVASRF 460 (1749)
Q Consensus 386 ~s~~~h~~~Vt~LafSPDG--~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i---~~l~gH~~~V~sVafSpdg~as~~ 460 (1749)
.....|...++.+.|..+- .-|++++.||.|..|+++.-............ ..-..-...++++.|.+..
T Consensus 285 ~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~----- 359 (555)
T KOG1587|consen 285 ALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD----- 359 (555)
T ss_pred cccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCC-----
Confidence 2345688889999997644 44899999999999988653321111110000 0011223467788887754
Q ss_pred ccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCC
Q 000270 461 SLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP 540 (1749)
Q Consensus 461 s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~ 540 (1749)
+..|+.|+.+|.|..-+-...+... .........+..|.
T Consensus 360 --------------------p~~FiVGTe~G~v~~~~r~g~~~~~---------------------~~~~~~~~~~~~h~ 398 (555)
T KOG1587|consen 360 --------------------PNHFIVGTEEGKVYKGCRKGYTPAP---------------------EVSYKGHSTFITHI 398 (555)
T ss_pred --------------------CceEEEEcCCcEEEEEeccCCcccc---------------------cccccccccccccC
Confidence 4789999999998773322111000 00112234566788
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEEECC-CCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCC--ce
Q 000270 541 RGVNMIVWSLDNRFVLAAIMDCRICVWNAA-DGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG--IP 617 (1749)
Q Consensus 541 ~~VtsVafSPDG~~LATGs~DGtI~VWDl~-tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tG--k~ 617 (1749)
+.|.++.++|-+..++..+.|.+|+||... ...++..+..+...|++++|||..+.+++++..||.|.|||+... .+
T Consensus 399 g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P 478 (555)
T KOG1587|consen 399 GPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP 478 (555)
T ss_pred cceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC
Confidence 999999999999877777779999999987 677888888888889999999999999999999999999998643 33
Q ss_pred EEEEee-------eecc-CCCEEEEEcCCCeEEEEECCC
Q 000270 618 IRIYEI-------SRFR-DGASIILSDDVGQLYILNTGQ 648 (1749)
Q Consensus 618 l~tl~~-------~~~s-DG~~LAsgd~DG~I~IWdl~t 648 (1749)
+.+... ..++ .|+.|++|+..|.+++|++..
T Consensus 479 v~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 479 VLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 333322 1233 699999999999999999854
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9e-14 Score=160.49 Aligned_cols=227 Identities=22% Similarity=0.369 Sum_probs=168.9
Q ss_pred EEccCCCCeEEEEEcC-CCcEEEEEeCCCeEEEEECCCC-------ceEEEecCCCCceEEEEeccCCCcceEEEeecCC
Q 000270 280 SCRGHEGDITDLAVSS-NNALVASASNDCIIRVWRLPDG-------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD 351 (1749)
Q Consensus 280 tL~gHs~~VtsLafSP-Dg~lLASGS~DGtIrVWDl~tg-------k~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~D 351 (1749)
.+.||+++|.+++|+| +...||+||.|.+|.||.+..+ +++..|.||...|..|+|+|... +.|++++.|
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~--NVLlsag~D 153 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP--NVLLSAGSD 153 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch--hhHhhccCC
Confidence 3569999999999999 6779999999999999998754 56788999999999999999765 489999999
Q ss_pred CcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCC
Q 000270 352 GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQ 431 (1749)
Q Consensus 352 GtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~ 431 (1749)
.+|.+|++.+|..+..+ .|...|++++|+.||.+|++++.|..|||||.+++.
T Consensus 154 n~v~iWnv~tgeali~l---------------------~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~------ 206 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITL---------------------DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT------ 206 (472)
T ss_pred ceEEEEeccCCceeeec---------------------CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCc------
Confidence 99999999999865544 278889999999999999999999999999998743
Q ss_pred CCcceeeecCCCCC-eEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEe----CCCcEEEEecCCCCCCcc
Q 000270 432 PNHEIDVLSGHEND-VNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCS----RDGSAIIWIPRSRRSHPK 506 (1749)
Q Consensus 432 ~~~~i~~l~gH~~~-V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS----~DGtIrIWDl~s~k~~~~ 506 (1749)
.+....+|.+. -..+.|-.++ . |++.+ .+..+-|||...-...
T Consensus 207 ---~v~e~~~heG~k~~Raifl~~g--------------------------~-i~tTGfsr~seRq~aLwdp~nl~eP-- 254 (472)
T KOG0303|consen 207 ---VVSEGVAHEGAKPARAIFLASG--------------------------K-IFTTGFSRMSERQIALWDPNNLEEP-- 254 (472)
T ss_pred ---EeeecccccCCCcceeEEeccC--------------------------c-eeeeccccccccceeccCcccccCc--
Confidence 34444566542 2233455544 3 44433 4678899987752210
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEe-CCCeEEEEECCCCce-EEEecC--CC
Q 000270 507 AARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAADGSL-VHSLTG--HT 582 (1749)
Q Consensus 507 ~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs-~DGtI~VWDl~tgkl-v~tL~g--H~ 582 (1749)
....-.....+|..--|.+|...|..++ .|+.|+.|.+....+ ++-|.. ..
T Consensus 255 -------------------------~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~ 309 (472)
T KOG0303|consen 255 -------------------------IALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK 309 (472)
T ss_pred -------------------------ceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccC
Confidence 0111223456788888899988876554 799999999976653 333322 23
Q ss_pred CCeEEEEEcC
Q 000270 583 ESTYVLDVHP 592 (1749)
Q Consensus 583 ~~VtsLafSP 592 (1749)
.+-..+.|-|
T Consensus 310 epQRG~g~mP 319 (472)
T KOG0303|consen 310 EPQRGMGFMP 319 (472)
T ss_pred Cccccccccc
Confidence 3445667766
|
|
| >cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.8e-15 Score=150.64 Aligned_cols=83 Identities=17% Similarity=0.274 Sum_probs=78.6
Q ss_pred ccccccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHH
Q 000270 1653 RVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLV 1732 (1749)
Q Consensus 1653 ~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~~s~~~~~a~~l~~~~ 1732 (1749)
++.-+++|..++.....|+||++|++||||+||++||+++.|.++.+|..|+++||.||.+||++++.++.+|..|+++|
T Consensus 21 g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~i~~~A~~l~~~f 100 (104)
T cd05522 21 GRLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLYNENDSQEYKDAVLLEKEA 100 (104)
T ss_pred CCcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 45677889999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 000270 1733 TRT 1735 (1749)
Q Consensus 1733 ~~~ 1735 (1749)
.+.
T Consensus 101 ~~l 103 (104)
T cd05522 101 RLL 103 (104)
T ss_pred HHh
Confidence 863
|
Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-13 Score=153.24 Aligned_cols=242 Identities=20% Similarity=0.298 Sum_probs=181.5
Q ss_pred cCCCCEEEEEECCCC-----CEEEEEeCCcEEEEEECCC--CeE--EEEE-----ccCCCCeEEEEEcC-CCcEEEEEeC
Q 000270 241 GHRNAVYCAIFDRSG-----RYVITGSDDRLVKIWSMET--AYC--LASC-----RGHEGDITDLAVSS-NNALVASASN 305 (1749)
Q Consensus 241 GH~~~Vt~VaFSPDG-----~~LATGS~DGtVrIWDl~T--g~~--l~tL-----~gHs~~VtsLafSP-Dg~lLASGS~ 305 (1749)
.|.-+++.+.|.|+. ++|||.++ .++||.+.. ... ...+ ..+.+++++..|+. +-++|.+.|-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 588899999999976 46777653 799999873 211 1111 24678999999997 7789999999
Q ss_pred CCeEEEEECCCCce---EEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCC
Q 000270 306 DCIIRVWRLPDGLP---ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 382 (1749)
Q Consensus 306 DGtIrVWDl~tgk~---l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~ 382 (1749)
|-+..|||+++|.. ...|-.|...|..|+|...+. ..||+.+.||.|++||++.......++-.
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~--~~FASvgaDGSvRmFDLR~leHSTIIYE~----------- 238 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSR--DVFASVGADGSVRMFDLRSLEHSTIIYED----------- 238 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCcc--ceEEEecCCCcEEEEEecccccceEEecC-----------
Confidence 99999999998733 456778999999999999654 48999999999999999977654444321
Q ss_pred CCCCCCCCCCCceEEEEEcC-CCCEEEEecCCC-cEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCccccc
Q 000270 383 APSSSAGPQSHQIFCCAFNA-NGTVFVTGSSDT-LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 460 (1749)
Q Consensus 383 ~~~~s~~~h~~~Vt~LafSP-DG~~LaSGs~DG-tVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~ 460 (1749)
.........++|++ |-+++|+-..|. .|.|.|++. |...+..+.+|.+.|+.|+|.|..
T Consensus 239 ------p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~--------P~tpva~L~~H~a~VNgIaWaPhS----- 299 (364)
T KOG0290|consen 239 ------PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV--------PCTPVARLRNHQASVNGIAWAPHS----- 299 (364)
T ss_pred ------CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecC--------CCcceehhhcCcccccceEecCCC-----
Confidence 11145678899988 456777765554 589999975 456788899999999999999975
Q ss_pred ccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCC
Q 000270 461 SLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP 540 (1749)
Q Consensus 461 s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~ 540 (1749)
...|++++.|..+.|||+.+.-. .....++.... ..
T Consensus 300 --------------------~~hictaGDD~qaliWDl~q~~~-----------------------~~~~dPilay~-a~ 335 (364)
T KOG0290|consen 300 --------------------SSHICTAGDDCQALIWDLQQMPR-----------------------ENGEDPILAYT-AG 335 (364)
T ss_pred --------------------CceeeecCCcceEEEEecccccc-----------------------cCCCCchhhhh-cc
Confidence 37899999999999999985210 01112222222 45
Q ss_pred CCeeEEEEcC-CCCEEEEEeC
Q 000270 541 RGVNMIVWSL-DNRFVLAAIM 560 (1749)
Q Consensus 541 ~~VtsVafSP-DG~~LATGs~ 560 (1749)
..|+.+.|++ .+.+|+.+..
T Consensus 336 ~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 336 GEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred ceeeeeeecccCCCEEEEEec
Confidence 6799999995 5677877654
|
|
| >cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.9e-15 Score=148.32 Aligned_cols=84 Identities=17% Similarity=0.248 Sum_probs=75.4
Q ss_pred ccccccccc-----cccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHH
Q 000270 1657 QYGVQKLKQ-----VSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDL 1731 (1749)
Q Consensus 1657 ~~~~~~~~~-----~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~~s~~~~~a~~l~~~ 1731 (1749)
..+|..++. ....|+|+++|+.||||+||++||+++.|+++++|..||++||+||.+||+++|.++.+|+.|-+.
T Consensus 19 ~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~~s~~~~~A~~l~~d 98 (109)
T cd05492 19 DTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGADSEQYDAARWLYRD 98 (109)
T ss_pred cccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 466666662 335799999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhcCC
Q 000270 1732 VTRTLSSLK 1740 (1749)
Q Consensus 1732 ~~~~l~~~~ 1740 (1749)
....|.+|.
T Consensus 99 ~~~el~Ei~ 107 (109)
T cd05492 99 TCHDLRELR 107 (109)
T ss_pred HHHHHHHHh
Confidence 888877764
|
ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-12 Score=155.81 Aligned_cols=284 Identities=13% Similarity=0.169 Sum_probs=172.9
Q ss_pred EEEeCCcEEEEEECCC-Ce--EEEEEccCCCCeEEEEEcCCCcEEEEEe-CCCeEEEEECC-CCce--EEEecCCCCceE
Q 000270 259 ITGSDDRLVKIWSMET-AY--CLASCRGHEGDITDLAVSSNNALVASAS-NDCIIRVWRLP-DGLP--ISVLRGHTAAVT 331 (1749)
Q Consensus 259 ATGS~DGtVrIWDl~T-g~--~l~tL~gHs~~VtsLafSPDg~lLASGS-~DGtIrVWDl~-tgk~--l~tL~gHs~~Vt 331 (1749)
++...++.|.+|++.+ ++ .+..+. +.+....|+++|++++|++++ .++.|.+|++. ++.. +.... ..+...
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCce
Confidence 3446789999999964 43 455554 346678899999999887664 47889999996 3432 22222 334567
Q ss_pred EEEeccCCCcceEEEee-cCCCcEEEEEcCCCccc-ceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEE
Q 000270 332 AIAFSPRPGSVYQLLSS-SDDGTCRIWDARYSQFS-PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 409 (1749)
Q Consensus 332 sIaFSPdg~~~~~LaSg-S~DGtIrIWDl~tg~~l-~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaS 409 (1749)
.++|+|+++ +|+++ ..++.|.+|++.+.... ..+.. ..+...+.+++|+|+|+++++
T Consensus 84 ~i~~~~~g~---~l~v~~~~~~~v~v~~~~~~g~~~~~~~~------------------~~~~~~~~~~~~~p~g~~l~v 142 (330)
T PRK11028 84 HISTDHQGR---FLFSASYNANCVSVSPLDKDGIPVAPIQI------------------IEGLEGCHSANIDPDNRTLWV 142 (330)
T ss_pred EEEECCCCC---EEEEEEcCCCeEEEEEECCCCCCCCceee------------------ccCCCcccEeEeCCCCCEEEE
Confidence 899999987 55554 45899999999643211 11100 011223567889999988865
Q ss_pred e-cCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEe
Q 000270 410 G-SSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCS 488 (1749)
Q Consensus 410 G-s~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS 488 (1749)
+ ..++.|.+||+.+..... ........ .. .......+.|+|++ ++++++.
T Consensus 143 ~~~~~~~v~v~d~~~~g~l~-~~~~~~~~-~~-~g~~p~~~~~~pdg--------------------------~~lyv~~ 193 (330)
T PRK11028 143 PCLKEDRIRLFTLSDDGHLV-AQEPAEVT-TV-EGAGPRHMVFHPNQ--------------------------QYAYCVN 193 (330)
T ss_pred eeCCCCEEEEEEECCCCccc-ccCCCcee-cC-CCCCCceEEECCCC--------------------------CEEEEEe
Confidence 4 456999999996521100 00000011 11 12345678999987 6776665
Q ss_pred C-CCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeC-CCeEEE
Q 000270 489 R-DGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM-DCRICV 566 (1749)
Q Consensus 489 ~-DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~-DGtI~V 566 (1749)
. +++|.+|++...... ... ... +.. . +. .. .+......++|+|+|++|+++.. ++.|.+
T Consensus 194 ~~~~~v~v~~~~~~~~~--~~~-~~~--~~~----~----p~-----~~-~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v 254 (330)
T PRK11028 194 ELNSSVDVWQLKDPHGE--IEC-VQT--LDM----M----PA-----DF-SDTRWAADIHITPDGRHLYACDRTASLISV 254 (330)
T ss_pred cCCCEEEEEEEeCCCCC--EEE-EEE--Eec----C----CC-----cC-CCCccceeEEECCCCCEEEEecCCCCeEEE
Confidence 5 999999999742100 000 000 000 0 00 00 01123346899999999999864 789999
Q ss_pred EECCCCceEEEecCCC---CCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 000270 567 WNAADGSLVHSLTGHT---ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1749)
Q Consensus 567 WDl~tgklv~tL~gH~---~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~ 613 (1749)
|++.......++.+|. .....++|+|++..++++...+++|.+|++.
T Consensus 255 ~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 255 FSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 9986543222222221 2345789999554555555569999999874
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-13 Score=156.03 Aligned_cols=327 Identities=16% Similarity=0.196 Sum_probs=205.3
Q ss_pred EEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEE-eCCCeEEEEECCCCceEEEecCCC
Q 000270 249 AIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASA-SNDCIIRVWRLPDGLPISVLRGHT 327 (1749)
Q Consensus 249 VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASG-S~DGtIrVWDl~tgk~l~tL~gHs 327 (1749)
+.|||+|+|||+++.- .+.|-|..|-+.++.+.. -..|..|.|..|..+++.+ ..++.|.+|++...+-...+....
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ 91 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ 91 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence 5699999999999865 788889888766555443 4567888999888766654 668899999999988888898888
Q ss_pred CceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEE
Q 000270 328 AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVF 407 (1749)
Q Consensus 328 ~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~L 407 (1749)
..+.++.|+|||. +.|.+...+-.|.+|.+.+......- .+ ...+..++|+|||++.
T Consensus 92 agls~~~WSPdgr--hiL~tseF~lriTVWSL~t~~~~~~~---~p------------------K~~~kg~~f~~dg~f~ 148 (447)
T KOG4497|consen 92 AGLSSISWSPDGR--HILLTSEFDLRITVWSLNTQKGYLLP---HP------------------KTNVKGYAFHPDGQFC 148 (447)
T ss_pred CcceeeeECCCcc--eEeeeecceeEEEEEEeccceeEEec---cc------------------ccCceeEEECCCCcee
Confidence 9999999999986 47888889999999999876543221 11 1123444555555544
Q ss_pred EEecCCCcE------------------------------------EEEeCCCCCCCCCCCCCcceeeecCC-CCCeEEEE
Q 000270 408 VTGSSDTLA------------------------------------RVWNACKPNTDDSDQPNHEIDVLSGH-ENDVNYVQ 450 (1749)
Q Consensus 408 aSGs~DGtV------------------------------------rIWDl~t~~~~~s~~~~~~i~~l~gH-~~~V~sVa 450 (1749)
+..+..... -|||.. -....+.-| .-.+..+.
T Consensus 149 ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~-----------Leykv~aYe~~lG~k~v~ 217 (447)
T KOG4497|consen 149 AILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNV-----------LEYKVYAYERGLGLKFVE 217 (447)
T ss_pred eeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecch-----------hhheeeeeeeccceeEEE
Confidence 443322111 123320 000111111 13455666
Q ss_pred EcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCcccccc------------ccc-----
Q 000270 451 FSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW------------TQA----- 513 (1749)
Q Consensus 451 fSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~------------~~~----- 513 (1749)
|+|++ ++|+.|+.|+.+|+.+--+.+..+..... ...
T Consensus 218 wsP~~--------------------------qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~q 271 (447)
T KOG4497|consen 218 WSPCN--------------------------QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQ 271 (447)
T ss_pred ecccc--------------------------ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhh
Confidence 66654 89999999999998654443322111100 000
Q ss_pred ---cccCCCCCCCCCCC-----------------CCCCCcccccCCCCCeeEEEEcCCCCEEEEEeC--CCeEEEEECCC
Q 000270 514 ---YHLKVPPPPMPPQP-----------------PRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM--DCRICVWNAAD 571 (1749)
Q Consensus 514 ---~~l~v~~~~~~~~~-----------------~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~--DGtI~VWDl~t 571 (1749)
..+.+++......+ ....+.........++..++||+|..+++|-.. -+.+.|||++.
T Consensus 272 l~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~ 351 (447)
T KOG4497|consen 272 LLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN 351 (447)
T ss_pred hcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh
Confidence 01111111111100 001111122233456889999999999998753 35799999987
Q ss_pred CceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEeee-------eccCCCEEEEEcCCC
Q 000270 572 GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS-------RFRDGASIILSDDVG 639 (1749)
Q Consensus 572 gklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~-------~~sDG~~LAsgd~DG 639 (1749)
-++...+. ...+|.+..|+|..+++++. .....+++|...-..++..-..| +.-+|..++..+.|.
T Consensus 352 l~l~avLi-Qk~piraf~WdP~~prL~vc-tg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 352 LKLHAVLI-QKHPIRAFEWDPGRPRLVVC-TGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred hhhhhhhh-hccceeEEEeCCCCceEEEE-cCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCc
Confidence 76655553 45679999999966666654 44557999998654444433222 233888888877764
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-12 Score=149.17 Aligned_cols=260 Identities=18% Similarity=0.213 Sum_probs=189.1
Q ss_pred EEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCC---eEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEEC
Q 000270 238 RVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA---YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314 (1749)
Q Consensus 238 tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg---~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl 314 (1749)
.+.--..+|+|.+|++|+..+|++.....|.||..... +..+++..|...|+.|+|+|..+.|++++.|..-+||..
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 34344578999999999999999999999999988654 578899999999999999999999999999999999998
Q ss_pred CCC---ceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCC
Q 000270 315 PDG---LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQ 391 (1749)
Q Consensus 315 ~tg---k~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h 391 (1749)
..+ ++.-+|..+...+++|.|+|..+ .||+|+.-..|.||-++...-- +.......+.
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~en---kFAVgSgar~isVcy~E~ENdW----------------WVsKhikkPi 145 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKEN---KFAVGSGARLISVCYYEQENDW----------------WVSKHIKKPI 145 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCc---eEEeccCccEEEEEEEecccce----------------ehhhhhCCcc
Confidence 443 45556667899999999999987 8999999999999877543211 0111122445
Q ss_pred CCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCC
Q 000270 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDST 471 (1749)
Q Consensus 392 ~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~ 471 (1749)
...|++++|+|++-+|++|+.|+..|||..- + .+|.--|..
T Consensus 146 rStv~sldWhpnnVLlaaGs~D~k~rVfSay-------------I----------K~Vdekpap---------------- 186 (361)
T KOG1523|consen 146 RSTVTSLDWHPNNVLLAAGSTDGKCRVFSAY-------------I----------KGVDEKPAP---------------- 186 (361)
T ss_pred ccceeeeeccCCcceecccccCcceeEEEEe-------------e----------eccccCCCC----------------
Confidence 6679999999999999999999999998762 1 111100100
Q ss_pred CcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCC
Q 000270 472 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD 551 (1749)
Q Consensus 472 ~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPD 551 (1749)
--|+-+ .+-+..+..+....+.|..+.|+|+
T Consensus 187 ----------------------~pWgsk---------------------------~PFG~lm~E~~~~ggwvh~v~fs~s 217 (361)
T KOG1523|consen 187 ----------------------TPWGSK---------------------------MPFGQLMSEASSSGGWVHGVLFSPS 217 (361)
T ss_pred ----------------------CCCccC---------------------------CcHHHHHHhhccCCCceeeeEeCCC
Confidence 001100 1112223333345678999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCc-eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 000270 552 NRFVLAAIMDCRICVWNAADGS-LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGK 606 (1749)
Q Consensus 552 G~~LATGs~DGtI~VWDl~tgk-lv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGt 606 (1749)
|..|+-.+.|+.|.+-|..... .+..+....-+..++.|-. . ..++.+++|..
T Consensus 218 G~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~is-e-~~vv~ag~~c~ 271 (361)
T KOG1523|consen 218 GNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWIS-E-NSVVAAGYDCG 271 (361)
T ss_pred CCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeec-C-CceeecCCCCC
Confidence 9999999999999999987664 3444433336677777754 2 33445666643
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-13 Score=160.09 Aligned_cols=211 Identities=18% Similarity=0.267 Sum_probs=159.7
Q ss_pred EEEccCCCCEEEEEECC-CCCEEEEEeCCcEEEEEECCCC-------eEEEEEccCCCCeEEEEEcC-CCcEEEEEeCCC
Q 000270 237 KRVRGHRNAVYCAIFDR-SGRYVITGSDDRLVKIWSMETA-------YCLASCRGHEGDITDLAVSS-NNALVASASNDC 307 (1749)
Q Consensus 237 ~tL~GH~~~Vt~VaFSP-DG~~LATGS~DGtVrIWDl~Tg-------~~l~tL~gHs~~VtsLafSP-Dg~lLASGS~DG 307 (1749)
-.+.||+++|..++|+| +...||+||.|.+|.||.+..+ +.+..|.||...|--++|+| ..+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 34789999999999999 5578999999999999998654 34677889999999999999 456899999999
Q ss_pred eEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCC
Q 000270 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSS 387 (1749)
Q Consensus 308 tIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s 387 (1749)
+|.||++.+|+.+.++. |...|+++.|+.+|. +|++++.|..|+|||.+++..+..-.
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs---~l~TtckDKkvRv~dpr~~~~v~e~~------------------ 212 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRDGS---LLCTTCKDKKVRVIDPRRGTVVSEGV------------------ 212 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEeccCCc---eeeeecccceeEEEcCCCCcEeeecc------------------
Confidence 99999999999988888 999999999999998 99999999999999999988665431
Q ss_pred CCCCCCceEEEEEcCCCCEEEEecC---CCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCccccccccc
Q 000270 388 AGPQSHQIFCCAFNANGTVFVTGSS---DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLAD 464 (1749)
Q Consensus 388 ~~~h~~~Vt~LafSPDG~~LaSGs~---DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~ 464 (1749)
...+..-..+.|-.+|.++.||.. +..+-+||...-. .+ ..+..+.. .+.|.---|.++.
T Consensus 213 -~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~-----eP-~~~~elDt-SnGvl~PFyD~dt--------- 275 (472)
T KOG0303|consen 213 -AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLE-----EP-IALQELDT-SNGVLLPFYDPDT--------- 275 (472)
T ss_pred -cccCCCcceeEEeccCceeeeccccccccceeccCccccc-----Cc-ceeEEecc-CCceEEeeecCCC---------
Confidence 111223445668888886666543 6778999985422 11 11222222 2233333344443
Q ss_pred CCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCC
Q 000270 465 SSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 502 (1749)
Q Consensus 465 ~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k 502 (1749)
.-..++|-.|+.|+.|.+....
T Consensus 276 ----------------~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 276 ----------------SIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ----------------CEEEEEecCCcceEEEEecCCC
Confidence 0145667789999999987643
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.5e-13 Score=159.72 Aligned_cols=263 Identities=15% Similarity=0.196 Sum_probs=184.6
Q ss_pred cCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEE-EEEcC-------CCcEEEEEeCCCeEEEE
Q 000270 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITD-LAVSS-------NNALVASASNDCIIRVW 312 (1749)
Q Consensus 241 GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~Vts-LafSP-------Dg~lLASGS~DGtIrVW 312 (1749)
.|...|.|+.|+.+...+.+++++-.++-|++.+. .+..+.-....|.. +..-+ ....|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~-s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRD-SVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccch-hhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 46677789999988877776655544445555432 22221111111111 11111 23478888999999998
Q ss_pred ECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000270 313 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1749)
Q Consensus 313 Dl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~ 392 (1749)
+ ..++.-..+..|.+.|.+-.|+|+|. -|+++++||.|++|.- +|....++ ....
T Consensus 91 ~-k~~rVE~sv~AH~~A~~~gRW~~dGt---gLlt~GEDG~iKiWSr-sGMLRStl--------------------~Q~~ 145 (737)
T KOG1524|consen 91 N-KSARVERSISAHAAAISSGRWSPDGA---GLLTAGEDGVIKIWSR-SGMLRSTV--------------------VQNE 145 (737)
T ss_pred c-ccchhhhhhhhhhhhhhhcccCCCCc---eeeeecCCceEEEEec-cchHHHHH--------------------hhcC
Confidence 8 56777778889999999999999997 7999999999999984 34332222 2245
Q ss_pred CceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCC
Q 000270 393 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472 (1749)
Q Consensus 393 ~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~ 472 (1749)
..|.|++|.|+..-++.+- .+.+.|=-+ .+...+...++|.+-|.++.|++..
T Consensus 146 ~~v~c~~W~p~S~~vl~c~-g~h~~IKpL---------~~n~k~i~WkAHDGiiL~~~W~~~s----------------- 198 (737)
T KOG1524|consen 146 ESIRCARWAPNSNSIVFCQ-GGHISIKPL---------AANSKIIRWRAHDGLVLSLSWSTQS----------------- 198 (737)
T ss_pred ceeEEEEECCCCCceEEec-CCeEEEeec---------ccccceeEEeccCcEEEEeecCccc-----------------
Confidence 6799999999887665543 455555444 2344566789999999999999976
Q ss_pred cccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCC
Q 000270 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN 552 (1749)
Q Consensus 473 ~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG 552 (1749)
+.+++|+.|-..+|||.. |..+.....|..+|++++|.|+
T Consensus 199 ---------~lI~sgGED~kfKvWD~~------------------------------G~~Lf~S~~~ey~ITSva~npd- 238 (737)
T KOG1524|consen 199 ---------NIIASGGEDFRFKIWDAQ------------------------------GANLFTSAAEEYAITSVAFNPE- 238 (737)
T ss_pred ---------cceeecCCceeEEeeccc------------------------------CcccccCChhccceeeeeeccc-
Confidence 899999999999999865 3344455668889999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 000270 553 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIV 609 (1749)
Q Consensus 553 ~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrV 609 (1749)
+.++.++. +++++ -....+.|..++||+ |+..++.|...|.+.+
T Consensus 239 ~~~~v~S~-nt~R~-----------~~p~~GSifnlsWS~-DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 239 KDYLLWSY-NTARF-----------SSPRVGSIFNLSWSA-DGTQATCGTSTGQLIV 282 (737)
T ss_pred cceeeeee-eeeee-----------cCCCccceEEEEEcC-CCceeeccccCceEEE
Confidence 66666654 23331 123467899999999 6777777777776654
|
|
| >PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins [] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-14 Score=140.31 Aligned_cols=81 Identities=16% Similarity=0.300 Sum_probs=72.5
Q ss_pred HHHhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHH
Q 000270 1647 LEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIK 1726 (1749)
Q Consensus 1647 l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~~s~~~~~a~ 1726 (1749)
+++.+..+..++.|..++.....|+|+++|+.||||++|++||++++|+++++|..||++||.||..||++++.++++|+
T Consensus 4 il~~l~~~~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~~~~A~ 83 (84)
T PF00439_consen 4 ILEELMKHPISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPIYKAAE 83 (84)
T ss_dssp HHHHHHTSTTGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHH
T ss_pred HHHHHHcCCCchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHHHHHhc
Confidence 34445567788999999988899999999999999999999999999999999999999999999999999999999997
Q ss_pred H
Q 000270 1727 R 1727 (1749)
Q Consensus 1727 ~ 1727 (1749)
+
T Consensus 84 ~ 84 (84)
T PF00439_consen 84 K 84 (84)
T ss_dssp H
T ss_pred C
Confidence 4
|
Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A .... |
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.9e-13 Score=151.06 Aligned_cols=292 Identities=13% Similarity=0.136 Sum_probs=204.6
Q ss_pred EEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECC------CCceEEEec-CCCCceEEEEeccCCCcceEEEeecC
Q 000270 278 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP------DGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSD 350 (1749)
Q Consensus 278 l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~------tgk~l~tL~-gHs~~VtsIaFSPdg~~~~~LaSgS~ 350 (1749)
.+-+.+|.+.|.+|.|+.++++||+|+.|..++||++. +.+++.... .|...|.|++|...+. .|++|+.
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~---~~~SG~~ 125 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR---FLYSGER 125 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe---eEecCCC
Confidence 34567899999999999999999999999999999985 346666554 3558999999998765 8999999
Q ss_pred CCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCC
Q 000270 351 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD 430 (1749)
Q Consensus 351 DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~ 430 (1749)
+++|.+.|+.+.+.+....- ....+.|+.+..+|..+.|++.+.++.|.+||++...
T Consensus 126 ~~~VI~HDiEt~qsi~V~~~------------------~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~----- 182 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIYVANE------------------NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ----- 182 (609)
T ss_pred cceeEeeecccceeeeeecc------------------cCcccceeecccCCCCceEEEEecCceEEEEeccCCC-----
Confidence 99999999998775544321 1234579999999999999999999999999997532
Q ss_pred CCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCcccccc
Q 000270 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1749)
Q Consensus 431 ~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~ 510 (1749)
.++ .+..+.........+.|+|.. +.+|++.+..|-+-+||.+..+....
T Consensus 183 ~~~-~~~~~AN~~~~F~t~~F~P~~-------------------------P~Li~~~~~~~G~~~~D~R~~~~~~~---- 232 (609)
T KOG4227|consen 183 NPI-SLVLPANSGKNFYTAEFHPET-------------------------PALILVNSETGGPNVFDRRMQARPVY---- 232 (609)
T ss_pred CCC-ceeeecCCCccceeeeecCCC-------------------------ceeEEeccccCCCCceeeccccchHH----
Confidence 111 222333445567778888865 46899999999999999985331100
Q ss_pred ccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceE-EEecCCC-------
Q 000270 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLV-HSLTGHT------- 582 (1749)
Q Consensus 511 ~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv-~tL~gH~------- 582 (1749)
..+....+.........+.|+|.|..|++--....-.+||+-+..+. ..+. |.
T Consensus 233 ------------------~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~ 293 (609)
T KOG4227|consen 233 ------------------QRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNI 293 (609)
T ss_pred ------------------hhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc-CCCCcceee
Confidence 00001111111223456789999999887766556667888664443 2332 22
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCC----------c-------------eEEEEeee-------ecc-CCCE
Q 000270 583 ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG----------I-------------PIRIYEIS-------RFR-DGAS 631 (1749)
Q Consensus 583 ~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tG----------k-------------~l~tl~~~-------~~s-DG~~ 631 (1749)
..|.+++|.- .+-++||+.+-.|.+|.+... . .+.++.+| .|+ ...+
T Consensus 294 ~T~KS~~F~~--D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~ 371 (609)
T KOG4227|consen 294 KTIKSMTFID--DYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNL 371 (609)
T ss_pred eeeeeeeeec--ceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcce
Confidence 2466778854 456889999999999987431 1 12233333 222 5667
Q ss_pred EEEEcCCCeEEEEEC
Q 000270 632 IILSDDVGQLYILNT 646 (1749)
Q Consensus 632 LAsgd~DG~I~IWdl 646 (1749)
|++++....++||.-
T Consensus 372 l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 372 LVSSGVENSFKLWSD 386 (609)
T ss_pred Eeccchhhheecccc
Confidence 777788888888864
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.7e-13 Score=145.77 Aligned_cols=213 Identities=17% Similarity=0.181 Sum_probs=153.6
Q ss_pred eEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCC-cceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCc
Q 000270 395 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN-HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1749)
Q Consensus 395 Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~-~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~ 473 (1749)
|.+-+++|.+++|++|..+|.|.+..+.+........++ ..+....+|.++|+.++|..
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d-------------------- 72 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD-------------------- 72 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--------------------
Confidence 566789999999999999999999998654333222333 33455689999999999983
Q ss_pred ccccccCCCEEEEEeCCCcEEEEecCCCCC-CccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCC
Q 000270 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRS-HPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN 552 (1749)
Q Consensus 474 ~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~-~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG 552 (1749)
.+|++|+ ||.|+-|..+.... ......|..... .+.-...-..|+++-..|..
T Consensus 73 --------~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P-----------------~~~~~~evPeINam~ldP~e 126 (325)
T KOG0649|consen 73 --------DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIP-----------------MQVDAVEVPEINAMWLDPSE 126 (325)
T ss_pred --------hheeecc-CceEEEeeehhhhhhccchhhhhhcCc-----------------cccCcccCCccceeEeccCC
Confidence 4566665 59999997664221 111112221110 00001122358999999988
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeeecc-----
Q 000270 553 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR----- 627 (1749)
Q Consensus 553 ~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~~~s----- 627 (1749)
.-|++++.|+.++-||+.+|+..+++.||++.|.+++--...+. ++||+.||+++|||+.+++++.++..-..+
T Consensus 127 nSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q-ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp 205 (325)
T KOG0649|consen 127 NSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ-ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRP 205 (325)
T ss_pred CcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc-eeecCCCccEEEEeccccceeEEeccccChhhcCc
Confidence 88888889999999999999999999999999999988443454 459999999999999999999988642111
Q ss_pred -----------CCCEEEEEcCCCeEEEEECCCCcccccc
Q 000270 628 -----------DGASIILSDDVGQLYILNTGQGESQKDA 655 (1749)
Q Consensus 628 -----------DG~~LAsgd~DG~I~IWdl~tGe~~k~~ 655 (1749)
+..+|++|+. -.+.+|.+...+....+
T Consensus 206 ~~g~wigala~~edWlvCGgG-p~lslwhLrsse~t~vf 243 (325)
T KOG0649|consen 206 DWGKWIGALAVNEDWLVCGGG-PKLSLWHLRSSESTCVF 243 (325)
T ss_pred ccCceeEEEeccCceEEecCC-CceeEEeccCCCceEEE
Confidence 4556665554 58899999887766443
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6e-13 Score=166.85 Aligned_cols=233 Identities=17% Similarity=0.146 Sum_probs=162.0
Q ss_pred CcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCC---CeEEEEECCCCce--EEEecCCCCceEEEEeccC
Q 000270 264 DRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND---CIIRVWRLPDGLP--ISVLRGHTAAVTAIAFSPR 338 (1749)
Q Consensus 264 DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~D---GtIrVWDl~tgk~--l~tL~gHs~~VtsIaFSPd 338 (1749)
+..|.|||..... .+.+..|...|.+++|+|||+.||.++.+ ..|++||+.+++. +..+.+| ...++|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 5799999987544 56677888899999999999999988754 4799999988864 3333333 447899999
Q ss_pred CCcceEEEee-cCCCcEEEE--EcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEec-CCC
Q 000270 339 PGSVYQLLSS-SDDGTCRIW--DARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS-SDT 414 (1749)
Q Consensus 339 g~~~~~LaSg-S~DGtIrIW--Dl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs-~DG 414 (1749)
++ .|+.+ +.+|.+.|| |+.++.. ..+ ..+...+.+.+|+|||+.|+.++ .+|
T Consensus 259 G~---~La~~~~~~g~~~Iy~~d~~~~~~-~~l--------------------t~~~~~~~~~~wSpDG~~i~f~s~~~g 314 (429)
T PRK01742 259 GS---RLAFASSKDGVLNIYVMGANGGTP-SQL--------------------TSGAGNNTEPSWSPDGQSILFTSDRSG 314 (429)
T ss_pred CC---EEEEEEecCCcEEEEEEECCCCCe-Eee--------------------ccCCCCcCCEEECCCCCEEEEEECCCC
Confidence 87 56654 468876665 5554432 111 12334577899999999877654 578
Q ss_pred cEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEE
Q 000270 415 LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAI 494 (1749)
Q Consensus 415 tVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIr 494 (1749)
.+.||++.... .....+ .+.. .++.|+|++ +.|+..+.++ +.
T Consensus 315 ~~~I~~~~~~~--------~~~~~l-~~~~--~~~~~SpDG--------------------------~~ia~~~~~~-i~ 356 (429)
T PRK01742 315 SPQVYRMSASG--------GGASLV-GGRG--YSAQISADG--------------------------KTLVMINGDN-VV 356 (429)
T ss_pred CceEEEEECCC--------CCeEEe-cCCC--CCccCCCCC--------------------------CEEEEEcCCC-EE
Confidence 88888874311 111112 3333 456788887 6777777665 55
Q ss_pred EEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEEC--CCC
Q 000270 495 IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA--ADG 572 (1749)
Q Consensus 495 IWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl--~tg 572 (1749)
+||+.++.... +... .....++|+|||++|++++.++.+.+|.+ .+|
T Consensus 357 ~~Dl~~g~~~~------------------------------lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G 405 (429)
T PRK01742 357 KQDLTSGSTEV------------------------------LSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADG 405 (429)
T ss_pred EEECCCCCeEE------------------------------ecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 58887643110 0000 01235789999999999999998888875 468
Q ss_pred ceEEEecCCCCCeEEEEEcCC
Q 000270 573 SLVHSLTGHTESTYVLDVHPF 593 (1749)
Q Consensus 573 klv~tL~gH~~~VtsLafSPd 593 (1749)
..++.+.+|.+.+..++|+|.
T Consensus 406 ~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 406 RFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CceEEccCCCCCCCCcccCCC
Confidence 899999999998999999983
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-12 Score=141.61 Aligned_cols=279 Identities=16% Similarity=0.251 Sum_probs=190.0
Q ss_pred CCEEEEEECCCCCEEEEEeCCcEEEEEECCC----------CeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEE
Q 000270 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMET----------AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1749)
Q Consensus 244 ~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~T----------g~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWD 313 (1749)
..|.+-+++|.+++|+.|..+|.|-|..+.+ ...+..+++|.++|+.++|. ..+|++|+ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 3466778999999999999999999998853 23455668999999999998 44677776 59999998
Q ss_pred CCCCce------EEEe--cCCC-----CceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCC
Q 000270 314 LPDGLP------ISVL--RGHT-----AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 380 (1749)
Q Consensus 314 l~tgk~------l~tL--~gHs-----~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~ 380 (1749)
+..... +..+ .-|. -.|+++-..|..+ -++.++.|+.+..||+++|+....+
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en---Si~~AgGD~~~y~~dlE~G~i~r~~------------ 152 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN---SILFAGGDGVIYQVDLEDGRIQREY------------ 152 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC---cEEEecCCeEEEEEEecCCEEEEEE------------
Confidence 754321 1111 1122 3588899998876 5667779999999999999876665
Q ss_pred CCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCC-CeEEEEEcCCCcccc
Q 000270 381 NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN-DVNYVQFSGCAVASR 459 (1749)
Q Consensus 381 ~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~-~V~sVafSpdg~as~ 459 (1749)
.+|++.|.|++--.....+++|+.||++||||..+.+......+.+....++.|-+ .|.+++.+.
T Consensus 153 --------rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e------ 218 (325)
T KOG0649|consen 153 --------RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE------ 218 (325)
T ss_pred --------cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC------
Confidence 57999999999855445688999999999999988765444444333333444433 455555442
Q ss_pred cccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCC
Q 000270 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 539 (1749)
Q Consensus 460 ~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h 539 (1749)
+.+++| ....+.+|.+++.++.. ..+-
T Consensus 219 ----------------------dWlvCG-gGp~lslwhLrsse~t~------------------------------vfpi 245 (325)
T KOG0649|consen 219 ----------------------DWLVCG-GGPKLSLWHLRSSESTC------------------------------VFPI 245 (325)
T ss_pred ----------------------ceEEec-CCCceeEEeccCCCceE------------------------------EEec
Confidence 466655 45578999998744221 1123
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 000270 540 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVW 610 (1749)
Q Consensus 540 ~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVW 610 (1749)
...+..+.|- ...+++++..+.|.-|.+ +|.+.....+.....++..|+..--++|..+|....+.|+
T Consensus 246 pa~v~~v~F~--~d~vl~~G~g~~v~~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 246 PARVHLVDFV--DDCVLIGGEGNHVQSYTL-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred ccceeEeeee--cceEEEeccccceeeeee-ccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 3456667774 457888888888988887 4555555554444455666644223455555655555554
|
|
| >cd04369 Bromodomain Bromodomain | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-14 Score=141.03 Aligned_cols=81 Identities=21% Similarity=0.388 Sum_probs=77.9
Q ss_pred ccccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHH
Q 000270 1655 QDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTR 1734 (1749)
Q Consensus 1655 ~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~~s~~~~~a~~l~~~~~~ 1734 (1749)
..++.|..++.....|+|+.+|++||||.+|++||++++|.++++|..|+++|+.||..||++++.++++|..|+..|..
T Consensus 18 ~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~~~~~~~~a~~l~~~~~~ 97 (99)
T cd04369 18 DLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPGSPIYKDAKKLEKLFEK 97 (99)
T ss_pred cccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 77889999998889999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred H
Q 000270 1735 T 1735 (1749)
Q Consensus 1735 ~ 1735 (1749)
.
T Consensus 98 ~ 98 (99)
T cd04369 98 L 98 (99)
T ss_pred h
Confidence 5
|
Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. |
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-12 Score=145.91 Aligned_cols=265 Identities=16% Similarity=0.218 Sum_probs=184.9
Q ss_pred EEEEEccCCCCeEEEEEcC--C-CcEEEEEeC----CCeEEEEEC--CCCceEEEe-cCCCCceEEEEeccCCC--cceE
Q 000270 277 CLASCRGHEGDITDLAVSS--N-NALVASASN----DCIIRVWRL--PDGLPISVL-RGHTAAVTAIAFSPRPG--SVYQ 344 (1749)
Q Consensus 277 ~l~tL~gHs~~VtsLafSP--D-g~lLASGS~----DGtIrVWDl--~tgk~l~tL-~gHs~~VtsIaFSPdg~--~~~~ 344 (1749)
.+..+.. .-.++++.|+. + ..+||.|+. .+.|.|-.+ .+++.+..- ..|.-+++.+.|.|+.. .+.+
T Consensus 37 eiy~Y~a-p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdl 115 (364)
T KOG0290|consen 37 EIYTYNA-PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDL 115 (364)
T ss_pred eEEEecC-CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcch
Confidence 3444443 34577888873 2 347788775 355666544 344443322 35889999999999874 2334
Q ss_pred EEeecCCCcEEEEEcCCC--cccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcC-CCCEEEEecCCCcEEEEeC
Q 000270 345 LLSSSDDGTCRIWDARYS--QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNA 421 (1749)
Q Consensus 345 LaSgS~DGtIrIWDl~tg--~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSP-DG~~LaSGs~DGtVrIWDl 421 (1749)
||+++ -.+++|.+... .......+ .......+..+++++.|+. +-++|.+.+-|-+..|||+
T Consensus 116 LATs~--D~LRlWri~~ee~~~~~~~~L-------------~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdi 180 (364)
T KOG0290|consen 116 LATSS--DFLRLWRIGDEESRVELQSVL-------------NNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDI 180 (364)
T ss_pred hhccc--CeEEEEeccCcCCceehhhhh-------------ccCcccccCCcccccccccCCcceeEeecccCeEEEEEE
Confidence 55444 36999998742 21111111 0111234566899999987 6678999999999999999
Q ss_pred CCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCC
Q 000270 422 CKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSR 501 (1749)
Q Consensus 422 ~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~ 501 (1749)
.++ ..+.....+-+|...|..|+|...+ .+.|++.+.||.||+||++..
T Consensus 181 e~~------~~~~vkTQLIAHDKEV~DIaf~~~s-------------------------~~~FASvgaDGSvRmFDLR~l 229 (364)
T KOG0290|consen 181 ETG------VSGTVKTQLIAHDKEVYDIAFLKGS-------------------------RDVFASVGADGSVRMFDLRSL 229 (364)
T ss_pred eec------cccceeeEEEecCcceeEEEeccCc-------------------------cceEEEecCCCcEEEEEeccc
Confidence 764 2344556788999999999999855 279999999999999999964
Q ss_pred CCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCC-CEEEEEeCC-CeEEEEECCC-CceEEEe
Q 000270 502 RSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN-RFVLAAIMD-CRICVWNAAD-GSLVHSL 578 (1749)
Q Consensus 502 k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG-~~LATGs~D-GtI~VWDl~t-gklv~tL 578 (1749)
.-...+. .-.....+...++|++.. +++|+-..| ..|.|.|++. ..++..|
T Consensus 230 eHSTIIY--------------------------E~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L 283 (364)
T KOG0290|consen 230 EHSTIIY--------------------------EDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL 283 (364)
T ss_pred ccceEEe--------------------------cCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh
Confidence 3111110 001113456678888754 677765554 4699999976 4678899
Q ss_pred cCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 000270 579 TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1749)
Q Consensus 579 ~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~t 614 (1749)
.+|.+.|++|+|.|.....|+|||.|..+.|||+..
T Consensus 284 ~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 284 RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred hcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 999999999999999889999999999999999864
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3e-13 Score=158.57 Aligned_cols=203 Identities=19% Similarity=0.221 Sum_probs=154.3
Q ss_pred EEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecC-
Q 000270 247 YCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRG- 325 (1749)
Q Consensus 247 t~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~g- 325 (1749)
.+++|+.+|..|+||+.||++|||++.....+.....|.+.|.+|+|+|||++||+.+.| ..+||++.+|.+++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 789999999999999999999999998888888888999999999999999999999999 899999999977776652
Q ss_pred -CCCceEEEEeccCCCcc--eEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcC
Q 000270 326 -HTAAVTAIAFSPRPGSV--YQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA 402 (1749)
Q Consensus 326 -Hs~~VtsIaFSPdg~~~--~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSP 402 (1749)
-......+.|+.++... +.++....-+.|+.|++........ ............|.+++.++
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~---------------l~~~~~~~~~~siSsl~VS~ 291 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNF---------------LRLRKKIKRFKSISSLAVSD 291 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccc---------------cchhhhhhccCcceeEEEcC
Confidence 23356678888776222 1233344556677777653321100 01111122344699999999
Q ss_pred CCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCC
Q 000270 403 NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHD 482 (1749)
Q Consensus 403 DG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~ 482 (1749)
+|+++|.|+.||.|-|++..+- ......-..|...|+.|.|+|+. +
T Consensus 292 dGkf~AlGT~dGsVai~~~~~l--------q~~~~vk~aH~~~VT~ltF~Pds--------------------------r 337 (398)
T KOG0771|consen 292 DGKFLALGTMDGSVAIYDAKSL--------QRLQYVKEAHLGFVTGLTFSPDS--------------------------R 337 (398)
T ss_pred CCcEEEEeccCCcEEEEEecee--------eeeEeehhhheeeeeeEEEcCCc--------------------------C
Confidence 9999999999999999998542 12233456899999999999987 6
Q ss_pred EEEEEeCCCcEEEEecC
Q 000270 483 NIVTCSRDGSAIIWIPR 499 (1749)
Q Consensus 483 ~LaSgS~DGtIrIWDl~ 499 (1749)
.+++.+.|..+.|..+.
T Consensus 338 ~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 338 YLASVSSDNEAAVTKLA 354 (398)
T ss_pred cccccccCCceeEEEEe
Confidence 77777777777776554
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=8e-13 Score=157.02 Aligned_cols=254 Identities=16% Similarity=0.155 Sum_probs=172.5
Q ss_pred EEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEe-cCCCCceEEEEeccCCCcceEEEeecCCCcEE
Q 000270 277 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL-RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355 (1749)
Q Consensus 277 ~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL-~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIr 355 (1749)
+.+.|.||++.|.+|+|+.+|.+|++||.|-.|.|||.-..+++..+ .||.+.|.++.|-|..+. .++++|..|..|+
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnn-riv~sgAgDk~i~ 120 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNN-RIVLSGAGDKLIK 120 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCC-eEEEeccCcceEE
Confidence 34568899999999999999999999999999999999888887776 589999999999998654 4899999999999
Q ss_pred EEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCC-CEEEEecCCCcEEEEeCCCCCCCCCCC-CC
Q 000270 356 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQ-PN 433 (1749)
Q Consensus 356 IWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG-~~LaSGs~DGtVrIWDl~t~~~~~s~~-~~ 433 (1749)
++|+...+.-.. .............|...|..++-.|++ ..|.+++.||+|+-||++.+....... ..
T Consensus 121 lfdl~~~~~~~~----------d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~ 190 (758)
T KOG1310|consen 121 LFDLDSSKEGGM----------DHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCP 190 (758)
T ss_pred EEeccccccccc----------ccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccccc
Confidence 999975321100 000111223345678889999999988 789999999999999998643211111 11
Q ss_pred cceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccc
Q 000270 434 HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQA 513 (1749)
Q Consensus 434 ~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~ 513 (1749)
..+..+...--...++.++|.. +.+|++|+.|-.+++||.+..... ....|...
T Consensus 191 ~~l~ny~~~lielk~ltisp~r-------------------------p~~laVGgsdpfarLYD~Rr~lks-~~s~~~~~ 244 (758)
T KOG1310|consen 191 SILVNYNPQLIELKCLTISPSR-------------------------PYYLAVGGSDPFARLYDRRRVLKS-FRSDGTMN 244 (758)
T ss_pred HHHHHhchhhheeeeeeecCCC-------------------------CceEEecCCCchhhhhhhhhhccC-CCCCcccc
Confidence 1111122222345677777754 479999999999999996431110 00111111
Q ss_pred cccCCCCCCCCCCCCCCCCcccc------------cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEE
Q 000270 514 YHLKVPPPPMPPQPPRGGPRQRI------------LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHS 577 (1749)
Q Consensus 514 ~~l~v~~~~~~~~~~~g~~i~~l------------~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~t 577 (1749)
. . + +....++..+ .--...++.++|+|+|.-|++.-..-.|+++|+..++....
T Consensus 245 ~----~-p-----p~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 245 T----C-P-----PKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred C----C-C-----CcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 0 0 0 0001111111 11112367889999999888877777899999988775543
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.8e-13 Score=158.87 Aligned_cols=307 Identities=18% Similarity=0.236 Sum_probs=220.7
Q ss_pred eEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEe-cCCCCceEEEEeccCCCcceEEEeecCCCcE
Q 000270 276 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL-RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354 (1749)
Q Consensus 276 ~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL-~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtI 354 (1749)
.+...|..|.+.|..|.|...|..|++||.|..|.+||+..+.....+ .||...|....|.|.... ..+++++.||.|
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d-~ti~~~s~dgqv 211 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGD-RTIVTSSRDGQV 211 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCC-cCceeccccCce
Confidence 345667899999999999999999999999999999999998876665 589999999999998643 479999999999
Q ss_pred EEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCC-CEEEEecCCCcEEEEeCCCCCCCCCCCCC
Q 000270 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPN 433 (1749)
Q Consensus 355 rIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG-~~LaSGs~DGtVrIWDl~t~~~~~s~~~~ 433 (1749)
++=.+........ ......|.+.|.-++.-|+. .-|.+++.|+.+.-+|++... +.
T Consensus 212 r~s~i~~t~~~e~-----------------t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~------pa 268 (559)
T KOG1334|consen 212 RVSEILETGYVEN-----------------TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDV------PA 268 (559)
T ss_pred eeeeeccccceec-----------------ceecccccCccceeeecCCCCCcccccccccceeeeeeccCC------cc
Confidence 9876543322211 11235688889999998865 468899999999999997643 22
Q ss_pred cceeeecCCCC---CeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCcccccc
Q 000270 434 HEIDVLSGHEN---DVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1749)
Q Consensus 434 ~~i~~l~gH~~---~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~ 510 (1749)
..+.....+.. ..+.|+..|.. ...+++++.|..+++||.+.-........
T Consensus 269 ~~~~cr~~~~~~~v~L~~Ia~~P~n-------------------------t~~faVgG~dqf~RvYD~R~~~~e~~n~~- 322 (559)
T KOG1334|consen 269 EKFVCREADEKERVGLYTIAVDPRN-------------------------TNEFAVGGSDQFARVYDQRRIDKEENNGV- 322 (559)
T ss_pred ceeeeeccCCccceeeeeEecCCCC-------------------------ccccccCChhhhhhhhcccchhhccccch-
Confidence 22223334444 45667777654 25899999999999999875221100000
Q ss_pred ccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCC--C----------ceEE-E
Q 000270 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD--G----------SLVH-S 577 (1749)
Q Consensus 511 ~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~t--g----------klv~-t 577 (1749)
....-+........-.|++++|+.++.-|+++-.|-.|++|.-.- | ..+. .
T Consensus 323 ----------------~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~v 386 (559)
T KOG1334|consen 323 ----------------LDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRV 386 (559)
T ss_pred ----------------hhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchh
Confidence 000000111112334699999999998888888899999996432 3 2233 4
Q ss_pred ecCCCC--CeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeee--------ccCCCEEEEEcCCCeEEEEECC
Q 000270 578 LTGHTE--STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISR--------FRDGASIILSDDVGQLYILNTG 647 (1749)
Q Consensus 578 L~gH~~--~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~~--------~sDG~~LAsgd~DG~I~IWdl~ 647 (1749)
++||.. .|..+-|---...+++||+.-|.|.||+-.+++.++.+.+.. +|---.||+++-|-.|+||...
T Consensus 387 YKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 387 YKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred hcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCC
Confidence 889965 466676632256799999999999999999999888776532 3356689999999999999864
Q ss_pred C
Q 000270 648 Q 648 (1749)
Q Consensus 648 t 648 (1749)
+
T Consensus 467 ~ 467 (559)
T KOG1334|consen 467 T 467 (559)
T ss_pred c
Confidence 3
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.7e-11 Score=145.35 Aligned_cols=269 Identities=13% Similarity=0.148 Sum_probs=168.1
Q ss_pred EEEEeCCCeEEEEECCC-Cc--eEEEecCCCCceEEEEeccCCCcceEEEe-ecCCCcEEEEEcCC-CcccceeecCCCC
Q 000270 300 VASASNDCIIRVWRLPD-GL--PISVLRGHTAAVTAIAFSPRPGSVYQLLS-SSDDGTCRIWDARY-SQFSPRIYIPRPS 374 (1749)
Q Consensus 300 LASGS~DGtIrVWDl~t-gk--~l~tL~gHs~~VtsIaFSPdg~~~~~LaS-gS~DGtIrIWDl~t-g~~l~~l~~~~~~ 374 (1749)
+++...++.|.+|++.+ ++ .+..+. +.+....++++|+++ +|++ +..++.|.+|++.. +.. .....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~---~lyv~~~~~~~i~~~~~~~~g~l-~~~~~---- 75 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKR---HLYVGVRPEFRVLSYRIADDGAL-TFAAE---- 75 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCC---EEEEEECCCCcEEEEEECCCCce-EEeee----
Confidence 44456789999999964 43 445554 346678899999987 5544 45688899999863 321 11100
Q ss_pred CcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecC-CCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcC
Q 000270 375 DAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSG 453 (1749)
Q Consensus 375 ~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~-DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSp 453 (1749)
.........++|+|+|++|++++. ++.|.+|++.+... ....+..+. +......++++|
T Consensus 76 --------------~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~-----~~~~~~~~~-~~~~~~~~~~~p 135 (330)
T PRK11028 76 --------------SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI-----PVAPIQIIE-GLEGCHSANIDP 135 (330)
T ss_pred --------------ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC-----CCCceeecc-CCCcccEeEeCC
Confidence 001123568999999998887764 88999999853210 111222222 223456778888
Q ss_pred CCcccccccccCCCCCCCCcccccccCCCEE-EEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCC
Q 000270 454 CAVASRFSLADSSKEDSTPKFKNSWFCHDNI-VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGP 532 (1749)
Q Consensus 454 dg~as~~s~~~~~~~~~~~~~~~s~~~~~~L-aSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~ 532 (1749)
++ +++ ++...++.|.+||+.+........ ..
T Consensus 136 ~g--------------------------~~l~v~~~~~~~v~v~d~~~~g~l~~~~----------------------~~ 167 (330)
T PRK11028 136 DN--------------------------RTLWVPCLKEDRIRLFTLSDDGHLVAQE----------------------PA 167 (330)
T ss_pred CC--------------------------CEEEEeeCCCCEEEEEEECCCCcccccC----------------------CC
Confidence 76 455 566677999999997522110000 00
Q ss_pred cccccCCCCCeeEEEEcCCCCEEEEEeC-CCeEEEEECCC--Cc--eEEEecCC------CCCeEEEEEcCCCCcEEEEE
Q 000270 533 RQRILPTPRGVNMIVWSLDNRFVLAAIM-DCRICVWNAAD--GS--LVHSLTGH------TESTYVLDVHPFNPRIAMSA 601 (1749)
Q Consensus 533 i~~l~~h~~~VtsVafSPDG~~LATGs~-DGtI~VWDl~t--gk--lv~tL~gH------~~~VtsLafSPdd~rlLaSg 601 (1749)
... .........++|+|+|++|+++.. ++.|.+|++.. ++ .+..+..+ ......+.|+| ++++|+++
T Consensus 168 ~~~-~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~lyv~ 245 (330)
T PRK11028 168 EVT-TVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHLYAC 245 (330)
T ss_pred cee-cCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEEEEe
Confidence 000 011234567999999999988876 89999999973 33 34444322 12234688999 55666555
Q ss_pred -eCCCcEEEEeCCCCc----eEEEEeee-------eccCCCEEEEEcC-CCeEEEEECC
Q 000270 602 -GYDGKTIVWDIWEGI----PIRIYEIS-------RFRDGASIILSDD-VGQLYILNTG 647 (1749)
Q Consensus 602 -s~DGtIrVWDl~tGk----~l~tl~~~-------~~sDG~~LAsgd~-DG~I~IWdl~ 647 (1749)
..++.|.+|++.... .+..+..+ ..+||++|+++.. ++.|.||.+.
T Consensus 246 ~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 246 DRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred cCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 457899999985432 23333322 2239999998765 8899999874
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.5e-12 Score=159.77 Aligned_cols=290 Identities=15% Similarity=0.171 Sum_probs=189.4
Q ss_pred CeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCC---CCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCc
Q 000270 287 DITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGH---TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ 363 (1749)
Q Consensus 287 ~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gH---s~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~ 363 (1749)
.-..+.|+|-...|+++...-.|+|||.+.++.+..+..+ ...|+.+.+...... .++++|+.||.|+||+--...
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~-aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDD-ALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccch-hheeeeccCceEEEecccccc
Confidence 4566788888888998887779999999999988777533 457889988876543 389999999999999643221
Q ss_pred -ccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCC
Q 000270 364 -FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 442 (1749)
Q Consensus 364 -~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH 442 (1749)
....+. ++............... .-+.|......|++++.-..|+|||+.... .......+.
T Consensus 1145 ~~~~eLV--------Taw~~Ls~~~~~~r~~~-~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~--------~~~diP~~s 1207 (1387)
T KOG1517|consen 1145 WKKPELV--------TAWSSLSDQLPGARGTG-LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQ--------VVADIPYGS 1207 (1387)
T ss_pred cCCceeE--------EeeccccccCccCCCCC-eeeehhhhCCeEEecCCeeEEEEEecccce--------eEeecccCC
Confidence 111111 11111111111111122 456787766667766668899999996421 111111223
Q ss_pred CCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCC
Q 000270 443 ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPP 522 (1749)
Q Consensus 443 ~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~ 522 (1749)
...|+++.-+- ..++.|++|..||.|++||.+....
T Consensus 1208 ~t~vTaLS~~~-------------------------~~gn~i~AGfaDGsvRvyD~R~a~~------------------- 1243 (1387)
T KOG1517|consen 1208 STLVTALSADL-------------------------VHGNIIAAGFADGSVRVYDRRMAPP------------------- 1243 (1387)
T ss_pred Cccceeecccc-------------------------cCCceEEEeecCCceEEeecccCCc-------------------
Confidence 33444443221 2248999999999999999885221
Q ss_pred CCCCCCCCCCcccccCCCCC--eeEEEEcCCCC-EEEEEeCCCeEEEEECCCCceEE--EecCCC--C-CeEEEEEcCCC
Q 000270 523 MPPQPPRGGPRQRILPTPRG--VNMIVWSLDNR-FVLAAIMDCRICVWNAADGSLVH--SLTGHT--E-STYVLDVHPFN 594 (1749)
Q Consensus 523 ~~~~~~~g~~i~~l~~h~~~--VtsVafSPDG~-~LATGs~DGtI~VWDl~tgklv~--tL~gH~--~-~VtsLafSPdd 594 (1749)
...+.....|... |..+.+-+.|- .|++|+.||.|++||++...... ++..|. + .++++..|+ .
T Consensus 1244 -------ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~-h 1315 (1387)
T KOG1517|consen 1244 -------DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHE-H 1315 (1387)
T ss_pred -------cccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeecc-C
Confidence 1234445556655 88899988775 49999999999999998743222 233343 3 489999999 6
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceEEEEeee---------------eccCCCEEEEEcCCCeEEEEECCC
Q 000270 595 PRIAMSAGYDGKTIVWDIWEGIPIRIYEIS---------------RFRDGASIILSDDVGQLYILNTGQ 648 (1749)
Q Consensus 595 ~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~---------------~~sDG~~LAsgd~DG~I~IWdl~t 648 (1749)
..++|+|+. +.|+||++ .|+.+..+... +++---+||+|..|..|.||....
T Consensus 1316 apiiAsGs~-q~ikIy~~-~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1316 APIIASGSA-QLIKIYSL-SGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred CCeeeecCc-ceEEEEec-ChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence 778999888 99999998 45555444311 122444677788888888887543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-11 Score=149.59 Aligned_cols=316 Identities=14% Similarity=0.080 Sum_probs=188.4
Q ss_pred cccccceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEe-CCC
Q 000270 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS-NDC 307 (1749)
Q Consensus 229 ~~~~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS-~DG 307 (1749)
...+.+.+.++..+...-..+.|+|||+++++++.||.|.++|+.+++.++++... ....++++|+||++|+++. ..+
T Consensus 22 D~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~ 100 (369)
T PF02239_consen 22 DGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEPG 100 (369)
T ss_dssp ETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEETT
T ss_pred ECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCEEEEEecCCC
Confidence 34557788888876555456789999999999999999999999999999998853 4568899999999988775 579
Q ss_pred eEEEEECCCCceEEEecCC-------CCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCC
Q 000270 308 IIRVWRLPDGLPISVLRGH-------TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 380 (1749)
Q Consensus 308 tIrVWDl~tgk~l~tL~gH-------s~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~ 380 (1749)
.|.|+|..+.++++.+... ...+.+|..+|... .++++.-+.+.|.+.|......+....+
T Consensus 101 ~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~--~fVv~lkd~~~I~vVdy~d~~~~~~~~i---------- 168 (369)
T PF02239_consen 101 TVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRP--EFVVNLKDTGEIWVVDYSDPKNLKVTTI---------- 168 (369)
T ss_dssp EEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSS--EEEEEETTTTEEEEEETTTSSCEEEEEE----------
T ss_pred ceeEeccccccceeecccccccccccCCCceeEEecCCCC--EEEEEEccCCeEEEEEeccccccceeee----------
Confidence 9999999999999887532 34677888888765 2445555568888888776543322211
Q ss_pred CCCCCCCCCCCCCceEEEEEcCCCCEEEEe-cCCCcEEEEeCCCCCCCCCCCCCcceeee----cCCCCCeEEEEEcCCC
Q 000270 381 NMAPSSSAGPQSHQIFCCAFNANGTVFVTG-SSDTLARVWNACKPNTDDSDQPNHEIDVL----SGHENDVNYVQFSGCA 455 (1749)
Q Consensus 381 ~~~~~~s~~~h~~~Vt~LafSPDG~~LaSG-s~DGtVrIWDl~t~~~~~s~~~~~~i~~l----~gH~~~V~sVafSpdg 455 (1749)
..........|+|+|++|+++ .....|-++|..+.+ .+..+ ..|..++..+ .+|..
T Consensus 169 ---------~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k---------~v~~i~~g~~p~~~~~~~~-php~~ 229 (369)
T PF02239_consen 169 ---------KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK---------LVALIDTGKKPHPGPGANF-PHPGF 229 (369)
T ss_dssp ---------E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE---------EEEEEE-SSSBEETTEEEE-EETTT
T ss_pred ---------cccccccccccCcccceeeecccccceeEEEeeccce---------EEEEeeccccccccccccc-cCCCc
Confidence 112346688999999987664 556789999986532 22111 1233333332 12211
Q ss_pred cccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCccc
Q 000270 456 VASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR 535 (1749)
Q Consensus 456 ~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~ 535 (1749)
. ..+ .........++.-..+.+.+|+..+. ..+++
T Consensus 230 g-~vw---------------~~~~~~~~~~~~ig~~~v~v~d~~~w-----------------------------kvv~~ 264 (369)
T PF02239_consen 230 G-PVW---------------ATSGLGYFAIPLIGTDPVSVHDDYAW-----------------------------KVVKT 264 (369)
T ss_dssp E-EEE---------------EEEBSSSSEEEEEE--TTT-STTTBT-----------------------------SEEEE
T ss_pred c-eEE---------------eeccccceecccccCCccccchhhcC-----------------------------eEEEE
Confidence 0 000 00000011111111223333433321 22333
Q ss_pred ccCCCCCeeEEEEcCCCCEEEEE----eCCCeEEEEECCCCceEEEecCC-CCCeEEEEEcCCCCcEEEEEeCCC-cEEE
Q 000270 536 ILPTPRGVNMIVWSLDNRFVLAA----IMDCRICVWNAADGSLVHSLTGH-TESTYVLDVHPFNPRIAMSAGYDG-KTIV 609 (1749)
Q Consensus 536 l~~h~~~VtsVafSPDG~~LATG----s~DGtI~VWDl~tgklv~tL~gH-~~~VtsLafSPdd~rlLaSgs~DG-tIrV 609 (1749)
+.....+ ..+..+|++++|++. ...+.|.|+|..+.+.+.++... ...+..+.|++++..+.+|.-..+ .|.|
T Consensus 265 I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v 343 (369)
T PF02239_consen 265 IPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVV 343 (369)
T ss_dssp EE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEE
T ss_pred EECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEE
Confidence 3434444 667889999999998 45588999999999888887532 235899999996666666665544 8999
Q ss_pred EeCCCCceEEEEe
Q 000270 610 WDIWEGIPIRIYE 622 (1749)
Q Consensus 610 WDl~tGk~l~tl~ 622 (1749)
||..|.+.+..+.
T Consensus 344 ~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 344 YDAKTLKEKKRIP 356 (369)
T ss_dssp EETTTTEEEEEEE
T ss_pred EECCCcEEEEEEE
Confidence 9999999999887
|
... |
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-11 Score=141.13 Aligned_cols=241 Identities=15% Similarity=0.204 Sum_probs=179.4
Q ss_pred CCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCC--CeEEEEECCCCceE
Q 000270 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND--CIIRVWRLPDGLPI 320 (1749)
Q Consensus 243 ~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~D--GtIrVWDl~tgk~l 320 (1749)
...+..+.|..+...|..|+.|| .++|+................|.-+-|+ ..+||..+.+ ..+++.++..+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceE
Confidence 34577788999999999999998 6888877544422222234456666676 4466666654 45999999888888
Q ss_pred EEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEE
Q 000270 321 SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 400 (1749)
Q Consensus 321 ~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~Laf 400 (1749)
+.+. ....|.+|.+..+ .|+++-.+. |.|||+++.+.+.++... .++...+.++++
T Consensus 82 Ce~~-fpt~IL~VrmNr~-----RLvV~Lee~-IyIydI~~MklLhTI~t~-----------------~~n~~gl~AlS~ 137 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNRK-----RLVVCLEES-IYIYDIKDMKLLHTIETT-----------------PPNPKGLCALSP 137 (391)
T ss_pred EEEe-cCCceEEEEEccc-----eEEEEEccc-EEEEecccceeehhhhcc-----------------CCCccceEeecc
Confidence 8776 5678999999875 566665544 999999999888777421 123445777777
Q ss_pred cCCCCEEEEec--CCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccc
Q 000270 401 NANGTVFVTGS--SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1749)
Q Consensus 401 SPDG~~LaSGs--~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~ 478 (1749)
+..+.+||.-+ ..|.|.|||+.+ ...+..+..|.+.+-+++|+++|
T Consensus 138 n~~n~ylAyp~s~t~GdV~l~d~~n---------l~~v~~I~aH~~~lAalafs~~G----------------------- 185 (391)
T KOG2110|consen 138 NNANCYLAYPGSTTSGDVVLFDTIN---------LQPVNTINAHKGPLAALAFSPDG----------------------- 185 (391)
T ss_pred CCCCceEEecCCCCCceEEEEEccc---------ceeeeEEEecCCceeEEEECCCC-----------------------
Confidence 77777888643 368899999965 45567788999999999999998
Q ss_pred cCCCEEEEEeCCCc-EEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEE
Q 000270 479 FCHDNIVTCSRDGS-AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 557 (1749)
Q Consensus 479 ~~~~~LaSgS~DGt-IrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LAT 557 (1749)
.+|||+|..|+ |||+.+.+++....+.. | .....|.+++|+|++++|++
T Consensus 186 ---~llATASeKGTVIRVf~v~~G~kl~eFRR--------------------G-------~~~~~IySL~Fs~ds~~L~~ 235 (391)
T KOG2110|consen 186 ---TLLATASEKGTVIRVFSVPEGQKLYEFRR--------------------G-------TYPVSIYSLSFSPDSQFLAA 235 (391)
T ss_pred ---CEEEEeccCceEEEEEEcCCccEeeeeeC--------------------C-------ceeeEEEEEEECCCCCeEEE
Confidence 89999999997 68898877653322111 0 01235899999999999999
Q ss_pred EeCCCeEEEEECCCC
Q 000270 558 AIMDCRICVWNAADG 572 (1749)
Q Consensus 558 Gs~DGtI~VWDl~tg 572 (1749)
.+..++|+||.+..-
T Consensus 236 sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 236 SSNTETVHIFKLEKV 250 (391)
T ss_pred ecCCCeEEEEEeccc
Confidence 999999999998654
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.9e-12 Score=152.00 Aligned_cols=201 Identities=19% Similarity=0.279 Sum_probs=148.1
Q ss_pred EEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCccccee
Q 000270 289 TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRI 368 (1749)
Q Consensus 289 tsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l 368 (1749)
.+++|+.+|..|++|+.||++|||++.+...+.....|.+.|.++.|+||++ .|++.+.| ..+||++.++..+...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk---~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGK---FLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCc---EEEEecCC-ceEEEEeccCchhhhc
Confidence 7899999999999999999999999999888888888999999999999998 89999999 8999999998655544
Q ss_pred ecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCC---C--EEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCC
Q 000270 369 YIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG---T--VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE 443 (1749)
Q Consensus 369 ~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG---~--~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~ 443 (1749)
.- ......+..|.|+.|+ . +++....-+.|+.|++
T Consensus 224 t~------------------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~---------------------- 263 (398)
T KOG0771|consen 224 TP------------------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDI---------------------- 263 (398)
T ss_pred CC------------------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEe----------------------
Confidence 20 1122334456666554 1 1111111222333222
Q ss_pred CCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCC
Q 000270 444 NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPM 523 (1749)
Q Consensus 444 ~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~ 523 (1749)
.+|+-..
T Consensus 264 --------------------------------------------------~~w~~~~----------------------- 270 (398)
T KOG0771|consen 264 --------------------------------------------------SLWSGSN----------------------- 270 (398)
T ss_pred --------------------------------------------------eeecccc-----------------------
Confidence 1221110
Q ss_pred CCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEe-cCCCCCeEEEEEcCCCCcEEEEEe
Q 000270 524 PPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL-TGHTESTYVLDVHPFNPRIAMSAG 602 (1749)
Q Consensus 524 ~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL-~gH~~~VtsLafSPdd~rlLaSgs 602 (1749)
.............|++++.|.||+++|.|+.||.|-|+++.+-++++.. ..|...|+.|.|+| +.+.+++.+
T Consensus 271 ------~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P-dsr~~~svS 343 (398)
T KOG0771|consen 271 ------FLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP-DSRYLASVS 343 (398)
T ss_pred ------ccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC-CcCcccccc
Confidence 0000111223347999999999999999999999999999988887755 58999999999999 778888899
Q ss_pred CCCcEEEEeCC
Q 000270 603 YDGKTIVWDIW 613 (1749)
Q Consensus 603 ~DGtIrVWDl~ 613 (1749)
.|..+.|..+.
T Consensus 344 s~~~~~v~~l~ 354 (398)
T KOG0771|consen 344 SDNEAAVTKLA 354 (398)
T ss_pred cCCceeEEEEe
Confidence 99888887663
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.7e-12 Score=152.34 Aligned_cols=268 Identities=15% Similarity=0.187 Sum_probs=181.5
Q ss_pred cCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEe-cc----CCCcceEEEeecCCCcEEEE
Q 000270 283 GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAF-SP----RPGSVYQLLSSSDDGTCRIW 357 (1749)
Q Consensus 283 gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaF-SP----dg~~~~~LaSgS~DGtIrIW 357 (1749)
.|...|.|+.|+.+...+.+++ |..+.+|.-.+...+..+.-....|....+ -+ .+.....|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 4677788999998776665555 555555543333222222211222211111 11 11222378889999998887
Q ss_pred EcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCccee
Q 000270 358 DARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID 437 (1749)
Q Consensus 358 Dl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~ 437 (1749)
+- .++... ....|.+.+.|-.|+|||.-|++++.||.|++|.-. +....
T Consensus 91 ~k-~~rVE~--------------------sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs----------GMLRS 139 (737)
T KOG1524|consen 91 NK-SARVER--------------------SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS----------GMLRS 139 (737)
T ss_pred cc-cchhhh--------------------hhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc----------chHHH
Confidence 63 232222 235688999999999999999999999999999863 23334
Q ss_pred eecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccC
Q 000270 438 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLK 517 (1749)
Q Consensus 438 ~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~ 517 (1749)
++.....+|+|++|.|+. .+.+++.+ |.+.|=-+.
T Consensus 140 tl~Q~~~~v~c~~W~p~S-------------------------~~vl~c~g--~h~~IKpL~------------------ 174 (737)
T KOG1524|consen 140 TVVQNEESIRCARWAPNS-------------------------NSIVFCQG--GHISIKPLA------------------ 174 (737)
T ss_pred HHhhcCceeEEEEECCCC-------------------------CceEEecC--CeEEEeecc------------------
Confidence 556677899999999986 13333332 333332211
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcE
Q 000270 518 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRI 597 (1749)
Q Consensus 518 v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rl 597 (1749)
....+.+..+|.+-|.++.|++....|++|+.|...+|||. -|..+..-..|..+|++++|.| + ..
T Consensus 175 -----------~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~np-d-~~ 240 (737)
T KOG1524|consen 175 -----------ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNP-E-KD 240 (737)
T ss_pred -----------cccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeecc-c-cc
Confidence 11223456778999999999999999999999999999996 5888888889999999999999 4 44
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEeeeeccCCCEEEEEcCCCeEEEEE
Q 000270 598 AMSAGYDGKTIVWDIWEGIPIRIYEISRFRDGASIILSDDVGQLYILN 645 (1749)
Q Consensus 598 LaSgs~DGtIrVWDl~tGk~l~tl~~~~~sDG~~LAsgd~DG~I~IWd 645 (1749)
++.++ -.++++=....| ..|...+.+||+++++|+..|.|.+=-
T Consensus 241 ~~v~S-~nt~R~~~p~~G---SifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 241 YLLWS-YNTARFSSPRVG---SIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred eeeee-eeeeeecCCCcc---ceEEEEEcCCCceeeccccCceEEEee
Confidence 44454 346665444444 345667888999999999999876543
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.8e-12 Score=157.39 Aligned_cols=224 Identities=19% Similarity=0.179 Sum_probs=154.1
Q ss_pred ceEEEEccCCCCEEEEEECCCCCEEEEEeCC---cEEEEEECCCCeE--EEEEccCCCCeEEEEEcCCCcEEEEEe-CCC
Q 000270 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDD---RLVKIWSMETAYC--LASCRGHEGDITDLAVSSNNALVASAS-NDC 307 (1749)
Q Consensus 234 ~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~D---GtVrIWDl~Tg~~--l~tL~gHs~~VtsLafSPDg~lLASGS-~DG 307 (1749)
...+.+..|...|.+.+|||||++||.++.+ ..|++||+.++.. +..+.+| ...++|+|||+.|+.++ .+|
T Consensus 194 ~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g 270 (429)
T PRK01742 194 FNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDG 270 (429)
T ss_pred CCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCC
Confidence 3456788899999999999999999987653 4799999988753 3334444 44689999999888765 577
Q ss_pred eEEEE--ECCCCceEEEecCCCCceEEEEeccCCCcceEEE-eecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCC
Q 000270 308 IIRVW--RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLL-SSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 384 (1749)
Q Consensus 308 tIrVW--Dl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~La-SgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~ 384 (1749)
.+.|| |+.++. +..+..+...+..+.|+||+. .|+ ++..+|...||++..........
T Consensus 271 ~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~---~i~f~s~~~g~~~I~~~~~~~~~~~~l--------------- 331 (429)
T PRK01742 271 VLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQ---SILFTSDRSGSPQVYRMSASGGGASLV--------------- 331 (429)
T ss_pred cEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCC---EEEEEECCCCCceEEEEECCCCCeEEe---------------
Confidence 66555 666655 455666777888999999987 444 45567888999875432111110
Q ss_pred CCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCccccccccc
Q 000270 385 SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLAD 464 (1749)
Q Consensus 385 ~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~ 464 (1749)
.+.. .+++|+|+|++|++++.++ +.+||+.++.. . .+..+ .....+.|+|++
T Consensus 332 -----~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~---------~-~lt~~-~~~~~~~~sPdG--------- 383 (429)
T PRK01742 332 -----GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGST---------E-VLSST-FLDESPSISPNG--------- 383 (429)
T ss_pred -----cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCe---------E-EecCC-CCCCCceECCCC---------
Confidence 0111 3578999999998887765 55689865421 1 11111 123457799987
Q ss_pred CCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCee
Q 000270 465 SSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVN 544 (1749)
Q Consensus 465 ~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~Vt 544 (1749)
..|++++.+|.+.+|.+.+. .+.....+..+...+.
T Consensus 384 -----------------~~i~~~s~~g~~~~l~~~~~---------------------------~G~~~~~l~~~~g~~~ 419 (429)
T PRK01742 384 -----------------IMIIYSSTQGLGKVLQLVSA---------------------------DGRFKARLPGSDGQVK 419 (429)
T ss_pred -----------------CEEEEEEcCCCceEEEEEEC---------------------------CCCceEEccCCCCCCC
Confidence 78999999999888876421 1344555666677788
Q ss_pred EEEEcCC
Q 000270 545 MIVWSLD 551 (1749)
Q Consensus 545 sVafSPD 551 (1749)
.++|+|-
T Consensus 420 ~p~wsp~ 426 (429)
T PRK01742 420 FPAWSPY 426 (429)
T ss_pred CcccCCC
Confidence 8899874
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-11 Score=158.41 Aligned_cols=271 Identities=17% Similarity=0.243 Sum_probs=187.6
Q ss_pred EECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCC
Q 000270 312 WRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQ 391 (1749)
Q Consensus 312 WDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h 391 (1749)
|+. .|..++.+..|...|..++.++... .+|++|+.||+|++|+++.-.... ............
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~--s~FvsgS~DGtVKvW~~~k~~~~~-------------~s~rS~ltys~~ 1097 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHT--SLFVSGSDDGTVKVWNLRKLEGEG-------------GSARSELTYSPE 1097 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCC--ceEEEecCCceEEEeeehhhhcCc-------------ceeeeeEEEecc
Confidence 765 5888999999999999999988763 289999999999999986432110 011111222335
Q ss_pred CCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCC-CCeEE-EEEcCCCcccccccccCCCCC
Q 000270 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE-NDVNY-VQFSGCAVASRFSLADSSKED 469 (1749)
Q Consensus 392 ~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~-~~V~s-VafSpdg~as~~s~~~~~~~~ 469 (1749)
...+.++.+.+.|..+|+++.||.|++.++...... ............+. +.|.+ -+|....
T Consensus 1098 ~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~--~~~~~~~ri~n~~~~g~vv~m~a~~~~~-------------- 1161 (1431)
T KOG1240|consen 1098 GSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVS--KRVATQVRIPNLKKDGVVVSMHAFTAIV-------------- 1161 (1431)
T ss_pred CCceEEEEeccCCCeEEEEcCCCeEEEEEccccccc--cceeeeeecccccCCCceEEeecccccc--------------
Confidence 667999999999999999999999999998642110 00011111111111 12222 2222211
Q ss_pred CCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEc
Q 000270 470 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWS 549 (1749)
Q Consensus 470 ~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafS 549 (1749)
. ...|+.+..-+.|..||+++... .|.. ......+.|++++.+
T Consensus 1162 ---------~-S~~lvy~T~~~~iv~~D~r~~~~-----~w~l----------------------k~~~~hG~vTSi~id 1204 (1431)
T KOG1240|consen 1162 ---------Q-SHVLVYATDLSRIVSWDTRMRHD-----AWRL----------------------KNQLRHGLVTSIVID 1204 (1431)
T ss_pred ---------c-ceeEEEEEeccceEEecchhhhh-----HHhh----------------------hcCccccceeEEEec
Confidence 0 03788888899999999986331 1211 122345679999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCCCeEEEEEcCCCC--cEEEEEe--CCCcEEEEeCCCCceEEEEeee
Q 000270 550 LDNRFVLAAIMDCRICVWNAADGSLVHSLT-GHTESTYVLDVHPFNP--RIAMSAG--YDGKTIVWDIWEGIPIRIYEIS 624 (1749)
Q Consensus 550 PDG~~LATGs~DGtI~VWDl~tgklv~tL~-gH~~~VtsLafSPdd~--rlLaSgs--~DGtIrVWDl~tGk~l~tl~~~ 624 (1749)
|.+.+++.|+..|.+.+||++=+.++..+. ++..+|..|+.+|.-+ ...++++ ..+.|-+|++.+|.+..++..+
T Consensus 1205 p~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1205 PWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred CCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcC
Confidence 999999999999999999999888888775 4567899999888765 4555554 4778999999999888777543
Q ss_pred -e-------c-------c------------CCCEEEEEcCCCeEEEEECCCCcc
Q 000270 625 -R-------F-------R------------DGASIILSDDVGQLYILNTGQGES 651 (1749)
Q Consensus 625 -~-------~-------s------------DG~~LAsgd~DG~I~IWdl~tGe~ 651 (1749)
. . + -+..+.+|+.|+.|+.||....+.
T Consensus 1285 ~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1285 DGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred CCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence 0 0 1 345788899999999999866543
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.2e-12 Score=138.12 Aligned_cols=270 Identities=16% Similarity=0.178 Sum_probs=182.3
Q ss_pred CCccccccceEEEEc-cCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCC-----C--
Q 000270 226 PSTMVQKMQNIKRVR-GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSN-----N-- 297 (1749)
Q Consensus 226 p~~~~~~~~~i~tL~-GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPD-----g-- 297 (1749)
-.|.+++...+..++ .|+..|+.+.--|+ ..|.|-+.|+++.+|++.-+..+.. |.-.+.++.|++- +
T Consensus 38 ~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~ 113 (323)
T KOG0322|consen 38 KMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKN 113 (323)
T ss_pred EEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEE---eeeeccccccccceeccCCCc
Confidence 457788888888888 67788999998887 4688888999999999987554432 4444555555432 1
Q ss_pred --cEEEEEeCCC-eEEEEECCCCceEEEe----cCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeec
Q 000270 298 --ALVASASNDC-IIRVWRLPDGLPISVL----RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYI 370 (1749)
Q Consensus 298 --~lLASGS~DG-tIrVWDl~tgk~l~tL----~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~ 370 (1749)
.+++.-+... .+.+-|......+... .+..+.+.+..+.-+.....+|++|.++|.|.+||+.++..+..+.
T Consensus 114 ~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~- 192 (323)
T KOG0322|consen 114 SEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLP- 192 (323)
T ss_pred chhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccc-
Confidence 1222221111 1222222222222222 1345677777765554445578899999999999999885433321
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEE
Q 000270 371 PRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQ 450 (1749)
Q Consensus 371 ~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVa 450 (1749)
. ..........|...|.++.|.+.-..=++|+.+..+..|.+..... ....-....-....|..+.
T Consensus 193 -~--------~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g-----slq~~~e~~lknpGv~gvr 258 (323)
T KOG0322|consen 193 -Q--------SSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG-----SLQIRKEITLKNPGVSGVR 258 (323)
T ss_pred -c--------ccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC-----cccccceEEecCCCccceE
Confidence 1 1122233456888999999988666667788888899999854211 0111111222334567777
Q ss_pred EcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCC
Q 000270 451 FSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRG 530 (1749)
Q Consensus 451 fSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g 530 (1749)
+-|++ +.+++++-||.||||..++.
T Consensus 259 IRpD~--------------------------KIlATAGWD~RiRVyswrtl----------------------------- 283 (323)
T KOG0322|consen 259 IRPDG--------------------------KILATAGWDHRIRVYSWRTL----------------------------- 283 (323)
T ss_pred EccCC--------------------------cEEeecccCCcEEEEEeccC-----------------------------
Confidence 77776 89999999999999998863
Q ss_pred CCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 000270 531 GPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 569 (1749)
Q Consensus 531 ~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl 569 (1749)
.++..+..|..+|++++|+|+...+|+|+.|++|.+|++
T Consensus 284 ~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 284 NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 355567778999999999999999999999999999986
|
|
| >cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.5e-13 Score=131.98 Aligned_cols=95 Identities=19% Similarity=0.295 Sum_probs=77.7
Q ss_pred HHHHHHHHhhcccccc------cccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhc
Q 000270 1642 SAFAKLEQSANRVQDQ------YGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYF 1715 (1749)
Q Consensus 1642 ~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN 1715 (1749)
..|..|...+.++++. -+|..++. ..++||.+|+.||||.+|++||+++.|+++++|..|+.+||.||++||
T Consensus 6 ~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~--~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr~yN 83 (110)
T cd05526 6 ELLATLFVSVMNHQDEEGRCYSDSLAELPE--LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERARRLS 83 (110)
T ss_pred HHHHHHHHHHHhccCCCCCCchHHHHHCCC--cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHHHhC
Confidence 3444444444445543 23444444 457889999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhc
Q 000270 1716 GRNTDLSTKIKRLSDLVTRTLSS 1738 (1749)
Q Consensus 1716 ~~~s~~~~~a~~l~~~~~~~l~~ 1738 (1749)
.++|.|++.|..|+++|.++-.+
T Consensus 84 ~~~S~iy~dA~eLq~~f~~~rd~ 106 (110)
T cd05526 84 RTDSEIYEDAVELQQFFIKIRDE 106 (110)
T ss_pred cccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999976543
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.9e-11 Score=147.27 Aligned_cols=234 Identities=12% Similarity=0.034 Sum_probs=155.5
Q ss_pred cEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeC---CCeEEEEECCCCceEEEecCCCCceEEEEeccCCCc
Q 000270 265 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN---DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS 341 (1749)
Q Consensus 265 GtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~---DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~ 341 (1749)
..|.+||..... .+.+..+...+.+.+|||||+.||..+. +..|.+|++.+|+.... ....+.+..++|+||++
T Consensus 179 ~~l~~~d~dg~~-~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~- 255 (429)
T PRK03629 179 YELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGS- 255 (429)
T ss_pred eeEEEEcCCCCC-CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCC-
Confidence 479999987554 3445556778999999999999987653 35799999988864332 22333455789999997
Q ss_pred ceEEE-eecCCC--cEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCC-CcEE
Q 000270 342 VYQLL-SSSDDG--TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD-TLAR 417 (1749)
Q Consensus 342 ~~~La-SgS~DG--tIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~D-GtVr 417 (1749)
.|+ +.+.+| .|.+||+.++.... +. .+...+...+|+|||+.|+.++.+ +...
T Consensus 256 --~La~~~~~~g~~~I~~~d~~tg~~~~-lt--------------------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~ 312 (429)
T PRK03629 256 --KLAFALSKTGSLNLYVMDLASGQIRQ-VT--------------------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQ 312 (429)
T ss_pred --EEEEEEcCCCCcEEEEEECCCCCEEE-cc--------------------CCCCCcCceEECCCCCEEEEEeCCCCCce
Confidence 454 334455 48889998765322 11 112346788999999988776654 4445
Q ss_pred EE--eCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCC---Cc
Q 000270 418 VW--NACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD---GS 492 (1749)
Q Consensus 418 IW--Dl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~D---Gt 492 (1749)
|| ++.++ ....+..+...+....|+|++ +.|+..+.+ ..
T Consensus 313 Iy~~d~~~g----------~~~~lt~~~~~~~~~~~SpDG--------------------------~~Ia~~~~~~g~~~ 356 (429)
T PRK03629 313 VYKVNINGG----------APQRITWEGSQNQDADVSSDG--------------------------KFMVMVSSNGGQQH 356 (429)
T ss_pred EEEEECCCC----------CeEEeecCCCCccCEEECCCC--------------------------CEEEEEEccCCCce
Confidence 55 55332 122333344445678899987 566655443 34
Q ss_pred EEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCe---EEEEEC
Q 000270 493 AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCR---ICVWNA 569 (1749)
Q Consensus 493 IrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGt---I~VWDl 569 (1749)
|.+||+.++... .+.. ........|+|||++|+.++.++. +.++++
T Consensus 357 I~~~dl~~g~~~------------------------------~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 357 IAKQDLATGGVQ------------------------------VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred EEEEECCCCCeE------------------------------EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 777887754310 0110 111235789999999999987764 777787
Q ss_pred CCCceEEEecCCCCCeEEEEEcC
Q 000270 570 ADGSLVHSLTGHTESTYVLDVHP 592 (1749)
Q Consensus 570 ~tgklv~tL~gH~~~VtsLafSP 592 (1749)
+|.....+.+|.+.+...+|+|
T Consensus 406 -~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 406 -DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred -CCCCeEECccCCCCcCCcccCC
Confidence 6777788888988999999998
|
|
| >COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.9e-13 Score=161.72 Aligned_cols=92 Identities=17% Similarity=0.282 Sum_probs=85.7
Q ss_pred hcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHH
Q 000270 1651 ANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSD 1730 (1749)
Q Consensus 1651 ~~~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~~s~~~~~a~~l~~ 1730 (1749)
.......+.|+.++...+.|+||++|+.||||++|+++|+++.|.++++|+.|++|||+||.+||+|++.++.+|+.|++
T Consensus 160 ~~~~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~ 239 (371)
T COG5076 160 RDGRFLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEK 239 (371)
T ss_pred ccccccccccccCCccccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHHH
Confidence 34445568899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCC
Q 000270 1731 LVTRTLSSLKAP 1742 (1749)
Q Consensus 1731 ~~~~~l~~~~~~ 1742 (1749)
.|...|+.++..
T Consensus 240 ~~~~~i~~~~~~ 251 (371)
T COG5076 240 YFLKLIEEIPEE 251 (371)
T ss_pred HHHHHHHhcccc
Confidence 999999987763
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-10 Score=134.79 Aligned_cols=239 Identities=11% Similarity=0.146 Sum_probs=170.6
Q ss_pred CCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCC--cEEEEEcCCC
Q 000270 285 EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG--TCRIWDARYS 362 (1749)
Q Consensus 285 s~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DG--tIrIWDl~tg 362 (1749)
...|..+.|..+..+|..|+.|| .+++....-............|.-+-|+.. ++|..+.+. .+++.+...+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS-----LvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS-----LVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc-----eeEEEecCCCceEEEEEcccC
Confidence 34566777999999999999997 678877654433333334446677778764 555544443 4889998887
Q ss_pred cccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCC
Q 000270 363 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 442 (1749)
Q Consensus 363 ~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH 442 (1749)
..+..+.. ...|.++.++. +.|+++-.+ .|+|||+.+.+. .+.+.....+
T Consensus 79 ~~ICe~~f---------------------pt~IL~VrmNr--~RLvV~Lee-~IyIydI~~Mkl------LhTI~t~~~n 128 (391)
T KOG2110|consen 79 TTICEIFF---------------------PTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKL------LHTIETTPPN 128 (391)
T ss_pred ceEEEEec---------------------CCceEEEEEcc--ceEEEEEcc-cEEEEeccccee------ehhhhccCCC
Confidence 77766654 34588888864 456665544 499999976432 2233333345
Q ss_pred CCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEE--EeCCCcEEEEecCCCCCCccccccccccccCCCC
Q 000270 443 ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVT--CSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPP 520 (1749)
Q Consensus 443 ~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaS--gS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~ 520 (1749)
...+.++.++..+ .+++. ....|.|.|||+.+-
T Consensus 129 ~~gl~AlS~n~~n--------------------------~ylAyp~s~t~GdV~l~d~~nl------------------- 163 (391)
T KOG2110|consen 129 PKGLCALSPNNAN--------------------------CYLAYPGSTTSGDVVLFDTINL------------------- 163 (391)
T ss_pred ccceEeeccCCCC--------------------------ceEEecCCCCCceEEEEEcccc-------------------
Confidence 5556655555543 34443 224689999998752
Q ss_pred CCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCe-EEEEECCCCceEEEecCC--CCCeEEEEEcCCCCcE
Q 000270 521 PPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCR-ICVWNAADGSLVHSLTGH--TESTYVLDVHPFNPRI 597 (1749)
Q Consensus 521 ~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGt-I~VWDl~tgklv~tL~gH--~~~VtsLafSPdd~rl 597 (1749)
.+...+..|.+.+.+++|+++|.+||||+..|+ |+||.+.+|+.+..|.-- ...|++|+|+| +..+
T Consensus 164 ----------~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~-ds~~ 232 (391)
T KOG2110|consen 164 ----------QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP-DSQF 232 (391)
T ss_pred ----------eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC-CCCe
Confidence 344566789999999999999999999999987 799999999999998633 34689999999 7789
Q ss_pred EEEEeCCCcEEEEeCCCC
Q 000270 598 AMSAGYDGKTIVWDIWEG 615 (1749)
Q Consensus 598 LaSgs~DGtIrVWDl~tG 615 (1749)
|++.|.-++|.|+.+.+.
T Consensus 233 L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEKV 250 (391)
T ss_pred EEEecCCCeEEEEEeccc
Confidence 999999999999987543
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.9e-11 Score=142.55 Aligned_cols=234 Identities=14% Similarity=0.145 Sum_probs=150.6
Q ss_pred CeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceE----EEecCCCCceEEEEe--ccCCCcceEEEeecCCCcEEEEEcC
Q 000270 287 DITDLAVSSNNALVASASNDCIIRVWRLPDGLPI----SVLRGHTAAVTAIAF--SPRPGSVYQLLSSSDDGTCRIWDAR 360 (1749)
Q Consensus 287 ~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l----~tL~gHs~~VtsIaF--SPdg~~~~~LaSgS~DGtIrIWDl~ 360 (1749)
.++...++-.|.+|+..-. ..+.+|+...+..+ ....-.....+|-+| .++.....-|+.|-.-|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 3445555556666665432 36888888744222 111111122334444 2222223367888888999998876
Q ss_pred CCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCC-CEEEEecCCCcEEEEeCCCCCC-----CCCCCCC-
Q 000270 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNT-----DDSDQPN- 433 (1749)
Q Consensus 361 tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG-~~LaSGs~DGtVrIWDl~t~~~-----~~s~~~~- 433 (1749)
.......+.. ...-....|+|+.|-|.+ ..|+++-.+|.+++||....-. -......
T Consensus 204 ~~~~sklfne----------------~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~ 267 (636)
T KOG2394|consen 204 NFEVSKLFNE----------------ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGD 267 (636)
T ss_pred hhHHHHhhhh----------------cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCC
Confidence 5322221110 001123679999999954 4677778899999997632100 0000000
Q ss_pred -------------cceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCC
Q 000270 434 -------------HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 500 (1749)
Q Consensus 434 -------------~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s 500 (1749)
..+..+.--.+.|+.++|+|++ .+||+.+.||.++|||+.+
T Consensus 268 ~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG--------------------------~~LA~VSqDGfLRvF~fdt 321 (636)
T KOG2394|consen 268 QFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDG--------------------------KYLATVSQDGFLRIFDFDT 321 (636)
T ss_pred eeEEeeeeccccCCccceeEeccccccceeEcCCC--------------------------ceEEEEecCceEEEeeccH
Confidence 1111122223467777777776 8999999999999999987
Q ss_pred CCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecC
Q 000270 501 RRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTG 580 (1749)
Q Consensus 501 ~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~g 580 (1749)
.+.++. +..--++..||+|||||+||++|+.|..|.||.+...+.+..-+|
T Consensus 322 ~eLlg~-----------------------------mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqG 372 (636)
T KOG2394|consen 322 QELLGV-----------------------------MKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQG 372 (636)
T ss_pred HHHHHH-----------------------------HHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccc
Confidence 443221 112235789999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEcC
Q 000270 581 HTESTYVLDVHP 592 (1749)
Q Consensus 581 H~~~VtsLafSP 592 (1749)
|..+|..|+|.|
T Consensus 373 HkSWVs~VaFDp 384 (636)
T KOG2394|consen 373 HKSWVSVVAFDP 384 (636)
T ss_pred cccceeeEeecc
Confidence 999999999987
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.2e-10 Score=139.04 Aligned_cols=328 Identities=14% Similarity=0.107 Sum_probs=198.8
Q ss_pred EEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEecc
Q 000270 258 VITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP 337 (1749)
Q Consensus 258 LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSP 337 (1749)
+++-..+|.|.|.|..+.+.+.++......-..++|+|||+++.+++.||.|.++|+.+++.+..+.. .....++++++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~~s~ 87 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIAVSP 87 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEEE--
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEEEcC
Confidence 34566789999999999999999986555445678999999999999999999999999999999874 34568899999
Q ss_pred CCCcceEEE-eecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEe-cCCCc
Q 000270 338 RPGSVYQLL-SSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG-SSDTL 415 (1749)
Q Consensus 338 dg~~~~~La-SgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSG-s~DGt 415 (1749)
||+ +++ +....+.|.++|..+.+.+..+...... .......+..+..+|....+++. -..+.
T Consensus 88 DG~---~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~-------------~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~ 151 (369)
T PF02239_consen 88 DGK---YVYVANYEPGTVSVIDAETLEPVKTIPTGGMP-------------VDGPESRVAAIVASPGRPEFVVNLKDTGE 151 (369)
T ss_dssp TTT---EEEEEEEETTEEEEEETTT--EEEEEE--EE--------------TTTS---EEEEEE-SSSSEEEEEETTTTE
T ss_pred CCC---EEEEEecCCCceeEeccccccceeeccccccc-------------ccccCCCceeEEecCCCCEEEEEEccCCe
Confidence 998 555 5567899999999998888776431100 01134457788888888855554 44578
Q ss_pred EEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEE-EEEeCCCcEE
Q 000270 416 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI-VTCSRDGSAI 494 (1749)
Q Consensus 416 VrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~L-aSgS~DGtIr 494 (1749)
|.+.|.... ..................|+|++ +++ ++...+..|-
T Consensus 152 I~vVdy~d~--------~~~~~~~i~~g~~~~D~~~dpdg--------------------------ry~~va~~~sn~i~ 197 (369)
T PF02239_consen 152 IWVVDYSDP--------KNLKVTTIKVGRFPHDGGFDPDG--------------------------RYFLVAANGSNKIA 197 (369)
T ss_dssp EEEEETTTS--------SCEEEEEEE--TTEEEEEE-TTS--------------------------SEEEEEEGGGTEEE
T ss_pred EEEEEeccc--------cccceeeecccccccccccCccc--------------------------ceeeecccccceeE
Confidence 888887542 11222233344566678888876 554 4456677888
Q ss_pred EEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCC--CeeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 000270 495 IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR--GVNMIVWSLDNRFVLAAIMDCRICVWNAADG 572 (1749)
Q Consensus 495 IWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~--~VtsVafSPDG~~LATGs~DGtI~VWDl~tg 572 (1749)
++|..+++.......-.. +...+...+ .|.. .++. ....+...++.-....+.+||..++
T Consensus 198 viD~~~~k~v~~i~~g~~---------------p~~~~~~~~-php~~g~vw~--~~~~~~~~~~~ig~~~v~v~d~~~w 259 (369)
T PF02239_consen 198 VIDTKTGKLVALIDTGKK---------------PHPGPGANF-PHPGFGPVWA--TSGLGYFAIPLIGTDPVSVHDDYAW 259 (369)
T ss_dssp EEETTTTEEEEEEE-SSS---------------BEETTEEEE-EETTTEEEEE--EEBSSSSEEEEEE--TTT-STTTBT
T ss_pred EEeeccceEEEEeecccc---------------ccccccccc-cCCCcceEEe--eccccceecccccCCccccchhhcC
Confidence 999887543211100000 000000111 1211 1222 1233444434444456778999999
Q ss_pred ceEEEecCCCCCeEEEEEcCCCCcEEEEE----eCCCcEEEEeCCCCceEEEEee---------eeccCCCEEEEE--cC
Q 000270 573 SLVHSLTGHTESTYVLDVHPFNPRIAMSA----GYDGKTIVWDIWEGIPIRIYEI---------SRFRDGASIILS--DD 637 (1749)
Q Consensus 573 klv~tL~gH~~~VtsLafSPdd~rlLaSg----s~DGtIrVWDl~tGk~l~tl~~---------~~~sDG~~LAsg--d~ 637 (1749)
+.++++.....+ ..+..|| ++++|... ...++|.|+|..+.+.+.++.. ...+||+.+.++ +.
T Consensus 260 kvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~ 337 (369)
T PF02239_consen 260 KVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDG 337 (369)
T ss_dssp SEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--
T ss_pred eEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecC
Confidence 999999987777 7788899 55555555 5568999999999987776642 123399966654 44
Q ss_pred CCeEEEEECCCCccccccc
Q 000270 638 VGQLYILNTGQGESQKDAK 656 (1749)
Q Consensus 638 DG~I~IWdl~tGe~~k~~~ 656 (1749)
+|.|.|||..+.+.++..+
T Consensus 338 ~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 338 NGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp TTEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEECCCcEEEEEEE
Confidence 5589999999887776554
|
... |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-10 Score=145.05 Aligned_cols=235 Identities=15% Similarity=0.062 Sum_probs=155.2
Q ss_pred cEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCC---CeEEEEECCCCceEEEecCCCCceEEEEeccCCCc
Q 000270 265 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS 341 (1749)
Q Consensus 265 GtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~D---GtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~ 341 (1749)
..|.|||.. +...+.+..|...+.+.+|+|||+.|+.++.. ..|.+||+.+++... +..+.+...+++|+|+++
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~- 260 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGR- 260 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCC-
Confidence 479999986 44455666778889999999999999988743 469999998887543 333455566889999987
Q ss_pred ceEEEeecCCC--cEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecC-CCc--E
Q 000270 342 VYQLLSSSDDG--TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTL--A 416 (1749)
Q Consensus 342 ~~~LaSgS~DG--tIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~-DGt--V 416 (1749)
.++++.+.+| .|.+||+.++.... +. .+......++|+|||+.|+.++. +|. |
T Consensus 261 -~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt--------------------~~~~~~~~~~~spDG~~l~f~sd~~g~~~i 318 (433)
T PRK04922 261 -RLALTLSRDGNPEIYVMDLGSRQLTR-LT--------------------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQI 318 (433)
T ss_pred -EEEEEEeCCCCceEEEEECCCCCeEE-Cc--------------------cCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 2334555555 59999998775322 11 12223456899999998887664 444 6
Q ss_pred EEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCC---cE
Q 000270 417 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG---SA 493 (1749)
Q Consensus 417 rIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG---tI 493 (1749)
+++++.++. ...+..+......++|+|++ +.|+..+.++ .|
T Consensus 319 y~~dl~~g~----------~~~lt~~g~~~~~~~~SpDG--------------------------~~Ia~~~~~~~~~~I 362 (433)
T PRK04922 319 YRVAASGGS----------AERLTFQGNYNARASVSPDG--------------------------KKIAMVHGSGGQYRI 362 (433)
T ss_pred EEEECCCCC----------eEEeecCCCCccCEEECCCC--------------------------CEEEEEECCCCceeE
Confidence 666664321 11222223344568899987 6666654433 58
Q ss_pred EEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCC---CeEEEEECC
Q 000270 494 IIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAA 570 (1749)
Q Consensus 494 rIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~D---GtI~VWDl~ 570 (1749)
.+|++.++... .+. +......+.|+|||++|+..+.+ +.|+++++
T Consensus 363 ~v~d~~~g~~~------------------------------~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~- 410 (433)
T PRK04922 363 AVMDLSTGSVR------------------------------TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVST- 410 (433)
T ss_pred EEEECCCCCeE------------------------------ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC-
Confidence 88988753310 010 11123356899999998877653 46888888
Q ss_pred CCceEEEecCCCCCeEEEEEcC
Q 000270 571 DGSLVHSLTGHTESTYVLDVHP 592 (1749)
Q Consensus 571 tgklv~tL~gH~~~VtsLafSP 592 (1749)
+|.....+..+.+.+..++|+|
T Consensus 411 ~g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 411 DGRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCCceEEcccCCCCCCCCccCC
Confidence 4556677776677788888887
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.7e-10 Score=142.08 Aligned_cols=234 Identities=14% Similarity=0.081 Sum_probs=155.2
Q ss_pred cEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeC---CCeEEEEECCCCceEEEecCCCCceEEEEeccCCCc
Q 000270 265 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN---DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS 341 (1749)
Q Consensus 265 GtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~---DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~ 341 (1749)
..|.+||.. |...+.+..|...|.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+.+.+|+||++
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~- 258 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGR- 258 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCC-
Confidence 478899986 4555667778889999999999999988764 468999999888653 4455667788999999987
Q ss_pred ceEEEeecCCCc--EEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecC-CC--cE
Q 000270 342 VYQLLSSSDDGT--CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DT--LA 416 (1749)
Q Consensus 342 ~~~LaSgS~DGt--IrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~-DG--tV 416 (1749)
.++++.+.+|. |.+||+.++... .+. .+.......+|+|||+.|+..+. +| .|
T Consensus 259 -~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt--------------------~~~~~~~~~~~spDG~~i~f~s~~~g~~~I 316 (435)
T PRK05137 259 -KVVMSLSQGGNTDIYTMDLRSGTTT-RLT--------------------DSPAIDTSPSYSPDGSQIVFESDRSGSPQL 316 (435)
T ss_pred -EEEEEEecCCCceEEEEECCCCceE-Ecc--------------------CCCCccCceeEcCCCCEEEEEECCCCCCeE
Confidence 23445566665 667788776532 121 12233567899999998887764 33 57
Q ss_pred EEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCC-C--cE
Q 000270 417 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD-G--SA 493 (1749)
Q Consensus 417 rIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~D-G--tI 493 (1749)
++||+..+ ....+..+...+....|+|++ +.|+..+.+ + .|
T Consensus 317 y~~d~~g~----------~~~~lt~~~~~~~~~~~SpdG--------------------------~~ia~~~~~~~~~~i 360 (435)
T PRK05137 317 YVMNADGS----------NPRRISFGGGRYSTPVWSPRG--------------------------DLIAFTKQGGGQFSI 360 (435)
T ss_pred EEEECCCC----------CeEEeecCCCcccCeEECCCC--------------------------CEEEEEEcCCCceEE
Confidence 77787432 122333344556678899987 666665543 2 56
Q ss_pred EEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCC------CeEEEE
Q 000270 494 IIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD------CRICVW 567 (1749)
Q Consensus 494 rIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~D------GtI~VW 567 (1749)
.+|++.++. ...+. ....+..+.|+|||++|+..+.+ ..|+++
T Consensus 361 ~~~d~~~~~------------------------------~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~ 409 (435)
T PRK05137 361 GVMKPDGSG------------------------------ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTV 409 (435)
T ss_pred EEEECCCCc------------------------------eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEE
Confidence 677764321 00010 11235678999999998876543 368888
Q ss_pred ECCCCceEEEecCCCCCeEEEEEcC
Q 000270 568 NAADGSLVHSLTGHTESTYVLDVHP 592 (1749)
Q Consensus 568 Dl~tgklv~tL~gH~~~VtsLafSP 592 (1749)
|+..+.. ..+.. .+.+...+|+|
T Consensus 410 dl~g~~~-~~l~~-~~~~~~p~Wsp 432 (435)
T PRK05137 410 DLTGRNE-REVPT-PGDASDPAWSP 432 (435)
T ss_pred ECCCCce-EEccC-CCCccCcccCC
Confidence 8865554 44442 44567788887
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-11 Score=146.21 Aligned_cols=256 Identities=17% Similarity=0.237 Sum_probs=197.4
Q ss_pred CCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEe
Q 000270 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL 323 (1749)
Q Consensus 244 ~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL 323 (1749)
..-+.+.|+.+|+.|+.|+.-|.|-.+|+.++.+...+. -...|.++.|..+.+++|++- ...+.||| ..|..+..+
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHCl 206 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHCL 206 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEeeh
Confidence 345678899999999999999999999999999988876 356799999999888888774 56899999 578888888
Q ss_pred cCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCC
Q 000270 324 RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN 403 (1749)
Q Consensus 324 ~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPD 403 (1749)
+.| ..|..+.|.|.. ++|++++..|.++.-|+.+|+.+..+.. ..+.+..++-+|-
T Consensus 207 k~~-~~v~rLeFLPyH---fLL~~~~~~G~L~Y~DVS~GklVa~~~t--------------------~~G~~~vm~qNP~ 262 (545)
T KOG1272|consen 207 KRH-IRVARLEFLPYH---FLLVAASEAGFLKYQDVSTGKLVASIRT--------------------GAGRTDVMKQNPY 262 (545)
T ss_pred hhc-Cchhhhcccchh---heeeecccCCceEEEeechhhhhHHHHc--------------------cCCccchhhcCCc
Confidence 855 568999999975 3889999999999999999998877642 3556778888998
Q ss_pred CCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCE
Q 000270 404 GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDN 483 (1749)
Q Consensus 404 G~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~ 483 (1749)
...+-+|...|+|.+|.... ...+..+..|.++|.+|++.+.| .+
T Consensus 263 NaVih~GhsnGtVSlWSP~s---------kePLvKiLcH~g~V~siAv~~~G--------------------------~Y 307 (545)
T KOG1272|consen 263 NAVIHLGHSNGTVSLWSPNS---------KEPLVKILCHRGPVSSIAVDRGG--------------------------RY 307 (545)
T ss_pred cceEEEcCCCceEEecCCCC---------cchHHHHHhcCCCcceEEECCCC--------------------------cE
Confidence 88999999999999999854 34566678999999999999988 89
Q ss_pred EEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCe
Q 000270 484 IVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCR 563 (1749)
Q Consensus 484 LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGt 563 (1749)
++|.+.|..++|||++.-... ..+.. ..+...++||..| +++++....
T Consensus 308 MaTtG~Dr~~kIWDlR~~~ql-----------------------------~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~ 355 (545)
T KOG1272|consen 308 MATTGLDRKVKIWDLRNFYQL-----------------------------HTYRT-PHPASNLSLSQKG--LLALSYGDH 355 (545)
T ss_pred EeecccccceeEeeecccccc-----------------------------ceeec-CCCcccccccccc--ceeeecCCe
Confidence 999999999999999963210 01111 2345667777665 444555567
Q ss_pred EEEEEC-CCC--ceEEEecCC--CCCeEEEEEcCC
Q 000270 564 ICVWNA-ADG--SLVHSLTGH--TESTYVLDVHPF 593 (1749)
Q Consensus 564 I~VWDl-~tg--klv~tL~gH--~~~VtsLafSPd 593 (1749)
|.||-- -.+ ..-.-+..| .+.|..|.|+|.
T Consensus 356 v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~ 390 (545)
T KOG1272|consen 356 VQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPY 390 (545)
T ss_pred eeeehhhhcCCCCCCcchhhhccCcccccceeccH
Confidence 999953 221 111122222 347888888884
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.2e-10 Score=142.26 Aligned_cols=236 Identities=15% Similarity=0.111 Sum_probs=154.5
Q ss_pred cEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCC---CeEEEEECCCCceEEEecCCCCceEEEEeccCCCc
Q 000270 265 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS 341 (1749)
Q Consensus 265 GtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~D---GtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~ 341 (1749)
..|.+||.. |.....+..+...+.+.+|+|||+.|+.++.+ ..|.+||+.+++... +....+.+.+.+|+||++
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~- 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGR- 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC-
Confidence 467778874 55556666788899999999999999887653 469999999887543 333445667899999987
Q ss_pred ceEE-EeecCCCcEEEEEcC--CCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecC-CCcEE
Q 000270 342 VYQL-LSSSDDGTCRIWDAR--YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTLAR 417 (1749)
Q Consensus 342 ~~~L-aSgS~DGtIrIWDl~--tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~-DGtVr 417 (1749)
.| ++.+.+|...||.+. ++. ...+ ..+.......+|+|||+.|+..+. +|...
T Consensus 253 --~la~~~~~~g~~~Iy~~d~~~~~-~~~l--------------------t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~ 309 (427)
T PRK02889 253 --TLAVALSRDGNSQIYTVNADGSG-LRRL--------------------TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQ 309 (427)
T ss_pred --EEEEEEccCCCceEEEEECCCCC-cEEC--------------------CCCCCCCcCeEEcCCCCEEEEEecCCCCcE
Confidence 44 466778887777553 332 1111 112233456789999998876654 46666
Q ss_pred EEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCC---cEE
Q 000270 418 VWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG---SAI 494 (1749)
Q Consensus 418 IWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG---tIr 494 (1749)
||.+.... . ....+..+.......+|+|++ +.|+..+.++ .|.
T Consensus 310 Iy~~~~~~-------g-~~~~lt~~g~~~~~~~~SpDG--------------------------~~Ia~~s~~~g~~~I~ 355 (427)
T PRK02889 310 IYRMPASG-------G-AAQRVTFTGSYNTSPRISPDG--------------------------KLLAYISRVGGAFKLY 355 (427)
T ss_pred EEEEECCC-------C-ceEEEecCCCCcCceEECCCC--------------------------CEEEEEEccCCcEEEE
Confidence 77653210 1 111111222333457899987 6777666554 588
Q ss_pred EEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCC---eEEEEECCC
Q 000270 495 IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC---RICVWNAAD 571 (1749)
Q Consensus 495 IWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DG---tI~VWDl~t 571 (1749)
+||+.+++.. .+.. ......+.|+|||++|+.++.++ .+.+.++ +
T Consensus 356 v~d~~~g~~~------------------------------~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~ 403 (427)
T PRK02889 356 VQDLATGQVT------------------------------ALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-D 403 (427)
T ss_pred EEECCCCCeE------------------------------EccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-C
Confidence 9998764310 0111 11235679999999998887544 3666676 5
Q ss_pred CceEEEecCCCCCeEEEEEcC
Q 000270 572 GSLVHSLTGHTESTYVLDVHP 592 (1749)
Q Consensus 572 gklv~tL~gH~~~VtsLafSP 592 (1749)
|.....+..+.+.+...+|+|
T Consensus 404 g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 404 GRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred CCceEEeecCCCCCCCCccCC
Confidence 777777777778888899988
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.2e-10 Score=133.18 Aligned_cols=315 Identities=14% Similarity=0.179 Sum_probs=201.9
Q ss_pred CCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEE-----eCC-----CeEEEEE
Q 000270 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASA-----SND-----CIIRVWR 313 (1749)
Q Consensus 244 ~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASG-----S~D-----GtIrVWD 313 (1749)
..++..++|++|+++|.+. +..|+|++..++..+.+...- .+++|.|+|-|.+|.+- ..+ -.+.+|+
T Consensus 35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 3477888999999888764 568999999988644444332 89999999999998762 112 3577999
Q ss_pred CCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCC
Q 000270 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1749)
Q Consensus 314 l~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~ 393 (1749)
+.++.....+......-+++.|+.|.. |++--..+.|.+|++...+.+.. .-+..
T Consensus 112 vet~~~~s~~q~k~Q~~W~~qfs~dEs----l~arlv~nev~f~~~~~f~~~~~---------------------kl~~~ 166 (566)
T KOG2315|consen 112 VETGVQRSQIQKKMQNGWVPQFSIDES----LAARLVSNEVQFYDLGSFKTIQH---------------------KLSVS 166 (566)
T ss_pred eccceehhheehhhhcCcccccccchh----hhhhhhcceEEEEecCCccceee---------------------eeecc
Confidence 999655555543333336899999975 44444456799999876332211 12455
Q ss_pred ceEEEEEcCCCC--EEEE-----ecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCC
Q 000270 394 QIFCCAFNANGT--VFVT-----GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSS 466 (1749)
Q Consensus 394 ~Vt~LafSPDG~--~LaS-----Gs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~ 466 (1749)
.|+.+++||.+. .+|+ ++.-+.|+||...-... ...+..-.-....-..+.|.+.+.
T Consensus 167 ~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~------~~~~a~ksFFkadkvqm~WN~~gt---------- 230 (566)
T KOG2315|consen 167 GITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ------HQPVANKSFFKADKVQMKWNKLGT---------- 230 (566)
T ss_pred ceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc------cchhhhccccccceeEEEeccCCc----------
Confidence 688999998743 4443 45566899998741110 001111011112223455665442
Q ss_pred CCCCCCcccccccCCCEEEEEe--CC---------CcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCccc
Q 000270 467 KEDSTPKFKNSWFCHDNIVTCS--RD---------GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR 535 (1749)
Q Consensus 467 ~~~~~~~~~~s~~~~~~LaSgS--~D---------GtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~ 535 (1749)
.+|+.++ -| .++++.++. +.....
T Consensus 231 ---------------~LLvLastdVDktn~SYYGEq~Lyll~t~------------------------------g~s~~V 265 (566)
T KOG2315|consen 231 ---------------ALLVLASTDVDKTNASYYGEQTLYLLATQ------------------------------GESVSV 265 (566)
T ss_pred ---------------eEEEEEEEeecCCCccccccceEEEEEec------------------------------CceEEE
Confidence 1222222 12 123333332 111111
Q ss_pred ccCCCCCeeEEEEcCCCCEEEE--EeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCC---CcEEEE
Q 000270 536 ILPTPRGVNMIVWSLDNRFVLA--AIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYD---GKTIVW 610 (1749)
Q Consensus 536 l~~h~~~VtsVafSPDG~~LAT--Gs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~D---GtIrVW 610 (1749)
-....++|.+++|+|+|+-+++ |-+-..+.|||+. +.++..|. .++-+++-|+| .+++|+-||-+ |.|-||
T Consensus 266 ~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvw 341 (566)
T KOG2315|consen 266 PLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNP-HGNIILLAGFGNLPGDMEVW 341 (566)
T ss_pred ecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECC-CCCEEEEeecCCCCCceEEE
Confidence 2234678999999999986665 4466789999984 66666653 55667899999 56666666654 889999
Q ss_pred eCCCCceEEEEee------eeccCCCEEEEEcC------CCeEEEEECCCCccc
Q 000270 611 DIWEGIPIRIYEI------SRFRDGASIILSDD------VGQLYILNTGQGESQ 652 (1749)
Q Consensus 611 Dl~tGk~l~tl~~------~~~sDG~~LAsgd~------DG~I~IWdl~tGe~~ 652 (1749)
|+.+-+++..+.. .|.+||.++++++. |..+.||+. +|..+
T Consensus 342 Dv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l 394 (566)
T KOG2315|consen 342 DVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLL 394 (566)
T ss_pred eccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCcee
Confidence 9999998887764 36679999998765 678899998 45444
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.4e-10 Score=126.72 Aligned_cols=285 Identities=18% Similarity=0.232 Sum_probs=178.1
Q ss_pred CCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEec-CCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCc
Q 000270 285 EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ 363 (1749)
Q Consensus 285 s~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~-gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~ 363 (1749)
...+..++|++.-..+|++..|-.|++|+-.+ ++...++ .....|++++|.|.+.. .|++|+..| |+||......
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsas--elavgCr~g-IciW~~s~tl 173 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSAS--ELAVGCRAG-ICIWSDSRTL 173 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcc--eeeeeecce-eEEEEcCccc
Confidence 45678899999777889999999999999766 5555554 34568999999998763 677777755 9999875322
Q ss_pred ccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecC-CCcEEEEeCCCCCCCCCCCCCcceeeecCC
Q 000270 364 FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDVLSGH 442 (1749)
Q Consensus 364 ~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~-DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH 442 (1749)
...+. ... +..........+....|+++.|.+||..+++++. +..|.|||..++.. +......
T Consensus 174 n~~r~-----~~~--~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~---------~pL~~~g 237 (445)
T KOG2139|consen 174 NANRN-----IRM--MSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK---------IPLIPKG 237 (445)
T ss_pred ccccc-----ccc--ccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc---------ccccccC
Confidence 11110 000 0000111111233478999999999999998875 56899999977532 1111234
Q ss_pred CCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCC
Q 000270 443 ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPP 522 (1749)
Q Consensus 443 ~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~ 522 (1749)
.+.+.-+.|+|++ ++|+++.-|+..++|.... .|+..
T Consensus 238 lgg~slLkwSPdg--------------------------d~lfaAt~davfrlw~e~q--------~wt~e--------- 274 (445)
T KOG2139|consen 238 LGGFSLLKWSPDG--------------------------DVLFAATCDAVFRLWQENQ--------SWTKE--------- 274 (445)
T ss_pred CCceeeEEEcCCC--------------------------CEEEEecccceeeeehhcc--------cceec---------
Confidence 5678889999998 8999999999999995542 11110
Q ss_pred CCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCC----Cc-----------eEEEe------cC-
Q 000270 523 MPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD----GS-----------LVHSL------TG- 580 (1749)
Q Consensus 523 ~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~t----gk-----------lv~tL------~g- 580 (1749)
+.....+.|...+|+|+|++|+.++. |.-.||.+.- +. ++..| .+
T Consensus 275 ------------rw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~ 341 (445)
T KOG2139|consen 275 ------------RWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQ 341 (445)
T ss_pred ------------ceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCc
Confidence 11112347999999999998876654 2233443321 10 11111 11
Q ss_pred --CCCCeEEEEEcCCCCcEEEEEeCC--------CcEEEEeCCCCceEEEEeee--------------eccCCCEEEEEc
Q 000270 581 --HTESTYVLDVHPFNPRIAMSAGYD--------GKTIVWDIWEGIPIRIYEIS--------------RFRDGASIILSD 636 (1749)
Q Consensus 581 --H~~~VtsLafSPdd~rlLaSgs~D--------GtIrVWDl~tGk~l~tl~~~--------------~~sDG~~LAsgd 636 (1749)
-.+.+.+|+|.|.+. +|++.-.. +.|.+||...--.+.....+ .+.+|.+|.++=
T Consensus 342 ~l~cgeaq~lawDpsGe-yLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaW 420 (445)
T KOG2139|consen 342 RLCCGEAQCLAWDPSGE-YLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAW 420 (445)
T ss_pred ccccCccceeeECCCCC-EEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEe
Confidence 145788999999554 44443222 34667777554443332111 112677777777
Q ss_pred CCCeEEEEEC
Q 000270 637 DVGQLYILNT 646 (1749)
Q Consensus 637 ~DG~I~IWdl 646 (1749)
+.|++.-|.+
T Consensus 421 sTGriq~ypl 430 (445)
T KOG2139|consen 421 STGRIQRYPL 430 (445)
T ss_pred ccCceEeeee
Confidence 7777766665
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.3e-11 Score=140.23 Aligned_cols=104 Identities=20% Similarity=0.376 Sum_probs=94.8
Q ss_pred eEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEEC
Q 000270 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314 (1749)
Q Consensus 235 ~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl 314 (1749)
++..+.--.+.|...+|+|||++||+.+.||.++|||..+.+++..++.--+...|++|||||++||+|+.|..|.||.+
T Consensus 282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred ccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEe
Confidence 34444444568999999999999999999999999999999988888877889999999999999999999999999999
Q ss_pred CCCceEEEecCCCCceEEEEeccC
Q 000270 315 PDGLPISVLRGHTAAVTAIAFSPR 338 (1749)
Q Consensus 315 ~tgk~l~tL~gHs~~VtsIaFSPd 338 (1749)
...+.++.-.+|...|..|+|.|-
T Consensus 362 ~erRVVARGqGHkSWVs~VaFDpy 385 (636)
T KOG2394|consen 362 EERRVVARGQGHKSWVSVVAFDPY 385 (636)
T ss_pred ccceEEEeccccccceeeEeeccc
Confidence 999999999999999999999983
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.4e-10 Score=133.93 Aligned_cols=293 Identities=12% Similarity=0.137 Sum_probs=193.0
Q ss_pred ceEEEEccCCCCEEEEEECCCCCEE-EEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEE
Q 000270 234 QNIKRVRGHRNAVYCAIFDRSGRYV-ITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1749)
Q Consensus 234 ~~i~tL~GH~~~Vt~VaFSPDG~~L-ATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVW 312 (1749)
++++.| +|....+.|..+|||+|| |||..--.|+|||+....+...-.--...|.-..++.|-.-++.-..|.+|-+.
T Consensus 43 eLiQdf-e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefH 121 (703)
T KOG2321|consen 43 ELIQDF-EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFH 121 (703)
T ss_pred HHHHhc-CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeeh
Confidence 333433 467788899999999985 577778899999998654332211123344445555566666777778888776
Q ss_pred ECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000270 313 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1749)
Q Consensus 313 Dl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~ 392 (1749)
.. .|..-. ++ -...-..++++.-.. -|++++....|.-+++..|+++..+.. ..
T Consensus 122 ak-~G~hy~-~R-IP~~GRDm~y~~~sc---Dly~~gsg~evYRlNLEqGrfL~P~~~--------------------~~ 175 (703)
T KOG2321|consen 122 AK-YGRHYR-TR-IPKFGRDMKYHKPSC---DLYLVGSGSEVYRLNLEQGRFLNPFET--------------------DS 175 (703)
T ss_pred hh-cCeeee-ee-cCcCCccccccCCCc---cEEEeecCcceEEEEcccccccccccc--------------------cc
Confidence 53 232111 11 112234455544332 244444445688889999988776632 34
Q ss_pred CceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCC-----CeEEEEEcCCCcccccccccCCC
Q 000270 393 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN-----DVNYVQFSGCAVASRFSLADSSK 467 (1749)
Q Consensus 393 ~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~-----~V~sVafSpdg~as~~s~~~~~~ 467 (1749)
+.+++|..++...+|++|+.+|.|-+||.+........... .....|.+ .|+++.|+.+|
T Consensus 176 ~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~---~~v~s~pg~~~~~svTal~F~d~g------------ 240 (703)
T KOG2321|consen 176 GELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA---SSVNSHPGGDAAPSVTALKFRDDG------------ 240 (703)
T ss_pred ccceeeeecCccceEEecccCceEEEecchhhhhheeeecc---cccCCCccccccCcceEEEecCCc------------
Confidence 67999999999999999999999999999764432211111 11222333 49999999877
Q ss_pred CCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEE
Q 000270 468 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 547 (1749)
Q Consensus 468 ~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVa 547 (1749)
=.+++|+.+|.|.|||+++.+++... -.+...+|..+.
T Consensus 241 --------------L~~aVGts~G~v~iyDLRa~~pl~~k----------------------------dh~~e~pi~~l~ 278 (703)
T KOG2321|consen 241 --------------LHVAVGTSTGSVLIYDLRASKPLLVK----------------------------DHGYELPIKKLD 278 (703)
T ss_pred --------------eeEEeeccCCcEEEEEcccCCceeec----------------------------ccCCccceeeec
Confidence 47999999999999999975532111 112234577788
Q ss_pred EcCCC--CEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 000270 548 WSLDN--RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1749)
Q Consensus 548 fSPDG--~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~ 613 (1749)
|-+.+ ..|++. ....++|||-.+|+....+..-. .+..+|+-| +..++++|-.++.+..|=+.
T Consensus 279 ~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~-~lND~C~~p-~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 279 WQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTS-DLNDFCFVP-GSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred ccccCCCceEEec-chHHhhhcccccCCceeeccccC-CcCceeeec-CCceEEEecCCCcceeEEcc
Confidence 86653 344443 34679999999999998887544 499999999 66677788887777665443
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.9e-09 Score=125.54 Aligned_cols=372 Identities=12% Similarity=0.106 Sum_probs=227.4
Q ss_pred ccccceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCC--
Q 000270 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDC-- 307 (1749)
Q Consensus 230 ~~~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DG-- 307 (1749)
.+......++..-.-+|..++|||.|++|++....| |.+|.-..+..+..+. ...|..+.|+|.+++|++-+..+
T Consensus 19 ~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~ 95 (561)
T COG5354 19 SQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPII 95 (561)
T ss_pred CccccccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee--cCCceecccCcccceeeeeccCCcc
Confidence 333444445555667899999999999999887654 9999988777666665 35799999999999999875433
Q ss_pred -------------eEEEEECCCCceEEEecCCCCc--eE-EEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecC
Q 000270 308 -------------IIRVWRLPDGLPISVLRGHTAA--VT-AIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIP 371 (1749)
Q Consensus 308 -------------tIrVWDl~tgk~l~tL~gHs~~--Vt-sIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~ 371 (1749)
.+.|||+.+|..+..+.+-..+ .+ -+.|+-+.. ++|-. ....+.|+++ ++.....-
T Consensus 96 ~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~---y~ARv-v~~sl~i~e~-t~n~~~~p--- 167 (561)
T COG5354 96 EPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDK---YVARV-VGSSLYIHEI-TDNIEEHP--- 167 (561)
T ss_pred ChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecch---hhhhh-ccCeEEEEec-CCccccCc---
Confidence 4999999999999988776655 55 678888876 33322 3345899997 44322110
Q ss_pred CCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCC--EEEE-----ecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCC
Q 000270 372 RPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT--VFVT-----GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN 444 (1749)
Q Consensus 372 ~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~--~LaS-----Gs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~ 444 (1749)
. ..-....|...+|+|.|+ .||. ++..+.++||.+.... .+.+-.-...
T Consensus 168 --~-------------~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s---------~l~tk~lfk~ 223 (561)
T COG5354 168 --F-------------KNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS---------VLVTKNLFKV 223 (561)
T ss_pred --h-------------hhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC---------eeeeeeeEee
Confidence 0 011134588888998643 3443 4567888898884321 1111111111
Q ss_pred CeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEE-----------eCCCcEEEEecCCCCCCccccccccc
Q 000270 445 DVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC-----------SRDGSAIIWIPRSRRSHPKAARWTQA 513 (1749)
Q Consensus 445 ~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSg-----------S~DGtIrIWDl~s~k~~~~~~~~~~~ 513 (1749)
.-..+.|.+.+ ++|+.- -....+.|+++...
T Consensus 224 ~~~qLkW~~~g--------------------------~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~------------ 265 (561)
T COG5354 224 SGVQLKWQVLG--------------------------KYLLVLVMTHTKSNKSYFGESNLYLLRITER------------ 265 (561)
T ss_pred cccEEEEecCC--------------------------ceEEEEEEEeeecccceeccceEEEEeeccc------------
Confidence 22244555544 222110 01233455554421
Q ss_pred cccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEe--CCCeEEEEECCCCceEEEecCCCCCeEEEEEc
Q 000270 514 YHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI--MDCRICVWNAADGSLVHSLTGHTESTYVLDVH 591 (1749)
Q Consensus 514 ~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs--~DGtI~VWDl~tgklv~tL~gH~~~VtsLafS 591 (1749)
.+.......++|..++|.|.++.+++.+ .+-.+.++|+... ++..+ ....-..+.|+
T Consensus 266 ------------------~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fs 324 (561)
T COG5354 266 ------------------SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFS 324 (561)
T ss_pred ------------------ccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCccccccccc
Confidence 1111123467899999999998776654 7888999998755 44433 33444678899
Q ss_pred CCCCcEEEEEeCC---CcEEEEeCCCCceEE-EEee------eeccCCCEEEEEcC------CCeEEEEECCCCcccccc
Q 000270 592 PFNPRIAMSAGYD---GKTIVWDIWEGIPIR-IYEI------SRFRDGASIILSDD------VGQLYILNTGQGESQKDA 655 (1749)
Q Consensus 592 Pdd~rlLaSgs~D---GtIrVWDl~tGk~l~-tl~~------~~~sDG~~LAsgd~------DG~I~IWdl~tGe~~k~~ 655 (1749)
| ..++++.+|-| |.|-+||......+. .+.+ .+.+||+++.+... |..|.||++...... .
T Consensus 325 p-~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--e 401 (561)
T COG5354 325 P-HERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--E 401 (561)
T ss_pred C-cccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh--h
Confidence 9 66777777765 779999987655444 4443 25559998877533 678999999654332 2
Q ss_pred cceeeecCCCcceeEcCCCcEEecccccCCCCCCCCCccccCCCCCCCCcch
Q 000270 656 KYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQ 707 (1749)
Q Consensus 656 ~~~~fFs~D~r~Lv~d~~G~Vld~~tq~~Phl~~~~~ll~D~~g~P~p~~~Q 707 (1749)
.+..+|-|.++.... ....+.|...-.--+|+.+|.-+|+...
T Consensus 402 l~~~~W~p~~~~~tt---------sSs~~~h~~~~~~~~~k~~Ga~~~e~~r 444 (561)
T COG5354 402 LTNITWDPSGQYVTT---------SSSCPKHKVEHGYKIFKIAGALYPEEAR 444 (561)
T ss_pred hhhccccCCccccee---------eccCCCCccccccccccccccccChhhh
Confidence 233455554433211 1111112111123477888877776543
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.1e-09 Score=123.90 Aligned_cols=177 Identities=17% Similarity=0.253 Sum_probs=127.8
Q ss_pred CCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEcc-CCCCeEEEEEcCCC-cEEEEEeCCCeEEEEECCCC----
Q 000270 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRG-HEGDITDLAVSSNN-ALVASASNDCIIRVWRLPDG---- 317 (1749)
Q Consensus 244 ~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~g-Hs~~VtsLafSPDg-~lLASGS~DGtIrVWDl~tg---- 317 (1749)
-.+..++|++.-..+|++..|-+|+||+-.. .+...++. ....|+||+|-|.+ +-|+.|+.. -|.||.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence 3567788998766788899999999999876 44444542 35679999999954 466666655 5999976421
Q ss_pred ce----------EEEecCCCCceEEEEeccCCCcceEEEeec-CCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCC
Q 000270 318 LP----------ISVLRGHTAAVTAIAFSPRPGSVYQLLSSS-DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1749)
Q Consensus 318 k~----------l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS-~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~ 386 (1749)
.. +..-.+| ..|++++|.+|+. .+++++ .|..|.|||..++..++...
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt---~l~tAS~gsssi~iWdpdtg~~~pL~~----------------- 235 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT---ILVTASFGSSSIMIWDPDTGQKIPLIP----------------- 235 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCC---EEeecccCcceEEEEcCCCCCcccccc-----------------
Confidence 11 1122344 6899999999987 677766 46789999999998765441
Q ss_pred CCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCC
Q 000270 387 SAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCA 455 (1749)
Q Consensus 387 s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg 455 (1749)
...+.+.-+.|||||.+|.++.-|+..++|..... .....-. --.+.|..-+|+|+|
T Consensus 236 ---~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~--------wt~erw~-lgsgrvqtacWspcG 292 (445)
T KOG2139|consen 236 ---KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQS--------WTKERWI-LGSGRVQTACWSPCG 292 (445)
T ss_pred ---cCCCceeeEEEcCCCCEEEEecccceeeeehhccc--------ceeccee-ccCCceeeeeecCCC
Confidence 23456888999999999999999999999965321 1111111 223489999999998
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-11 Score=144.26 Aligned_cols=232 Identities=11% Similarity=0.174 Sum_probs=179.6
Q ss_pred CCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcc
Q 000270 285 EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF 364 (1749)
Q Consensus 285 s~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~ 364 (1749)
.-.-+.+.++.+|++|+.|+..|.|..+|+.++.+...+. -...|..+.|..+.. +++......+.|||-..-+
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq----~~AVAQK~y~yvYD~~GtE- 202 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQ----FFAVAQKKYVYVYDNNGTE- 202 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchH----HHHhhhhceEEEecCCCcE-
Confidence 3445789999999999999999999999999999888876 456789999998764 4445566789999854332
Q ss_pred cceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCC
Q 000270 365 SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN 444 (1749)
Q Consensus 365 l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~ 444 (1749)
+..+ .....|..+.|.|-.-+|++++..|.++.-|+.++. .+..+..-.+
T Consensus 203 lHCl---------------------k~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk---------lVa~~~t~~G 252 (545)
T KOG1272|consen 203 LHCL---------------------KRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGK---------LVASIRTGAG 252 (545)
T ss_pred Eeeh---------------------hhcCchhhhcccchhheeeecccCCceEEEeechhh---------hhHHHHccCC
Confidence 2221 123458889999999999999999999999997754 3444555556
Q ss_pred CeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCC
Q 000270 445 DVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMP 524 (1749)
Q Consensus 445 ~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~ 524 (1749)
.+..++-.|-. ..+-+|...|+|.+|...+.
T Consensus 253 ~~~vm~qNP~N--------------------------aVih~GhsnGtVSlWSP~sk----------------------- 283 (545)
T KOG1272|consen 253 RTDVMKQNPYN--------------------------AVIHLGHSNGTVSLWSPNSK----------------------- 283 (545)
T ss_pred ccchhhcCCcc--------------------------ceEEEcCCCceEEecCCCCc-----------------------
Confidence 66666666643 47778999999999987753
Q ss_pred CCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCC
Q 000270 525 PQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYD 604 (1749)
Q Consensus 525 ~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~D 604 (1749)
.++..+..|.++|.+|++.++|+|+||++.|..|+|||++....++++.. ..+...++||. .+ +| ++|..
T Consensus 284 ------ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sq-kg-lL-A~~~G 353 (545)
T KOG1272|consen 284 ------EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQ-KG-LL-ALSYG 353 (545)
T ss_pred ------chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccc-cc-ce-eeecC
Confidence 45667788999999999999999999999999999999998887776655 34567788876 22 33 45566
Q ss_pred CcEEEEe
Q 000270 605 GKTIVWD 611 (1749)
Q Consensus 605 GtIrVWD 611 (1749)
..|.||.
T Consensus 354 ~~v~iw~ 360 (545)
T KOG1272|consen 354 DHVQIWK 360 (545)
T ss_pred Ceeeeeh
Confidence 6788884
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-10 Score=132.75 Aligned_cols=234 Identities=18% Similarity=0.296 Sum_probs=173.8
Q ss_pred ccceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEEC-CCCeEEEEEc-cCCCCeEEEEEcCCCcEEEEEeCCCeE
Q 000270 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSM-ETAYCLASCR-GHEGDITDLAVSSNNALVASASNDCII 309 (1749)
Q Consensus 232 ~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl-~Tg~~l~tL~-gHs~~VtsLafSPDg~lLASGS~DGtI 309 (1749)
+...++.++||.+.|+....-|-..-+++.+.|.+|+||-- +.++.-..+. .-..+++++.+.++...|+.|-..|++
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence 34567889999999999999998888999999999999953 4444433332 235789999999999999999999999
Q ss_pred EEEECCC----CceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcc--------
Q 000270 310 RVWRLPD----GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAV-------- 377 (1749)
Q Consensus 310 rVWDl~t----gk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~-------- 377 (1749)
.-+.+.. ...++....|...|..+.|+-... ++++.+.|..+.---.+.+..+....+.......
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e---~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~f 169 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE---WVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAF 169 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce---eEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEE
Confidence 9886643 345556668999999999987765 8888888887665444444433332221111100
Q ss_pred c-------------CCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCC
Q 000270 378 A-------------GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN 444 (1749)
Q Consensus 378 ~-------------g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~ 444 (1749)
. ...........+|.+.+.+++|.+....|.+|..|..|.+||+-.. ......+.+|.+
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~--------~g~~~el~gh~~ 241 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR--------KGTAYELQGHND 241 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC--------cceeeeeccchh
Confidence 0 1122233456788999999999999999999999999999999431 234566788999
Q ss_pred CeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCC
Q 000270 445 DVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 502 (1749)
Q Consensus 445 ~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k 502 (1749)
.|..++..+-. ..+++++.||.|.+|+++..+
T Consensus 242 kV~~l~~~~~t--------------------------~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 242 KVQALSYAQHT--------------------------RQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred hhhhhhhhhhh--------------------------eeeeeccCCCeEEEEecccee
Confidence 88888776543 689999999999999998644
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.7e-10 Score=132.80 Aligned_cols=282 Identities=13% Similarity=0.091 Sum_probs=179.3
Q ss_pred cCCCCeEEEEEcCCCcEE-EEEeCCCeEEEEECCCCceEEEecCCCC-ceEEEEeccCCCcceEEEeecCCCcEEEEEcC
Q 000270 283 GHEGDITDLAVSSNNALV-ASASNDCIIRVWRLPDGLPISVLRGHTA-AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360 (1749)
Q Consensus 283 gHs~~VtsLafSPDg~lL-ASGS~DGtIrVWDl~tgk~l~tL~gHs~-~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~ 360 (1749)
.|...-+.|..+|||+|| |+|..--.|++||+....+... +...+ .|.-+-++.|-. .++.-..|.+|-+..--
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFE-RhlDae~V~feiLsDD~S---K~v~L~~DR~IefHak~ 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFE-RHLDAEVVDFEILSDDYS---KSVFLQNDRTIEFHAKY 124 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeee-ecccccceeEEEeccchh---hheEeecCceeeehhhc
Confidence 477788999999999975 5566678999999876543222 11223 333334444332 34555667777665322
Q ss_pred CCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeec
Q 000270 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS 440 (1749)
Q Consensus 361 tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~ 440 (1749)
... ..+.+| ..-..++++.-..-|.+++....|+-+++.. +..+..+.
T Consensus 125 G~h--y~~RIP---------------------~~GRDm~y~~~scDly~~gsg~evYRlNLEq---------GrfL~P~~ 172 (703)
T KOG2321|consen 125 GRH--YRTRIP---------------------KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQ---------GRFLNPFE 172 (703)
T ss_pred Cee--eeeecC---------------------cCCccccccCCCccEEEeecCcceEEEEccc---------cccccccc
Confidence 111 111111 1123455544333344444556677777754 34455566
Q ss_pred CCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCC
Q 000270 441 GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPP 520 (1749)
Q Consensus 441 gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~ 520 (1749)
...+.+++|..++.. .+|++|+.+|.|..||.++....+....-. .++.
T Consensus 173 ~~~~~lN~v~in~~h--------------------------gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~-----~v~s 221 (703)
T KOG2321|consen 173 TDSGELNVVSINEEH--------------------------GLLACGTEDGVVEFWDPRDKSRVGTLDAAS-----SVNS 221 (703)
T ss_pred cccccceeeeecCcc--------------------------ceEEecccCceEEEecchhhhhheeeeccc-----ccCC
Confidence 667889999988764 789999999999999999755333221100 0000
Q ss_pred CCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCCCeEEEEEcCCCC-cEE
Q 000270 521 PPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT-GHTESTYVLDVHPFNP-RIA 598 (1749)
Q Consensus 521 ~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~-gH~~~VtsLafSPdd~-rlL 598 (1749)
.........|+++.|+-+|-.+++|+.+|.|.|||+.+.+++..-. +..-+|..+.|-+.+. ..|
T Consensus 222 -------------~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v 288 (703)
T KOG2321|consen 222 -------------HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKV 288 (703)
T ss_pred -------------CccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceE
Confidence 0001112349999999999999999999999999999988876442 3455899999977543 344
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEeee-------eccCCCEEEEEcCCCeEEEEE
Q 000270 599 MSAGYDGKTIVWDIWEGIPIRIYEIS-------RFRDGASIILSDDVGQLYILN 645 (1749)
Q Consensus 599 aSgs~DGtIrVWDl~tGk~l~tl~~~-------~~sDG~~LAsgd~DG~I~IWd 645 (1749)
+| .....++|||-.+|+....+... .++++.++.++-.++.+..|=
T Consensus 289 ~S-~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yy 341 (703)
T KOG2321|consen 289 VS-MDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYY 341 (703)
T ss_pred Ee-cchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEE
Confidence 43 44568899999999998877532 445777777777776555443
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1e-09 Score=137.74 Aligned_cols=203 Identities=14% Similarity=0.083 Sum_probs=133.1
Q ss_pred ceEEEEccCCCCEEEEEECCCCCEEEEEe---CCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEE-eCCC--
Q 000270 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGS---DDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASA-SNDC-- 307 (1749)
Q Consensus 234 ~~i~tL~GH~~~Vt~VaFSPDG~~LATGS---~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASG-S~DG-- 307 (1749)
...+.+..+...+.+.+|||||+.||..+ .+..|.+|++.+|+... +....+.+..++|+|||+.|+.. +.+|
T Consensus 189 ~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~ 267 (429)
T PRK03629 189 YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSL 267 (429)
T ss_pred CCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCc
Confidence 34456667778899999999999998654 24579999999885432 22233345578999999988765 4444
Q ss_pred eEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecC-CCcEEEE--EcCCCcccceeecCCCCCcccCCCCCC
Q 000270 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD-DGTCRIW--DARYSQFSPRIYIPRPSDAVAGRNMAP 384 (1749)
Q Consensus 308 tIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~-DGtIrIW--Dl~tg~~l~~l~~~~~~~~~~g~~~~~ 384 (1749)
.|.+||+.+++... +..+...+....|+||++ .|+.++. +|...|| |+.++.. ..+.
T Consensus 268 ~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~---~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt--------------- 327 (429)
T PRK03629 268 NLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQ---NLAYTSDQAGRPQVYKVNINGGAP-QRIT--------------- 327 (429)
T ss_pred EEEEEECCCCCEEE-ccCCCCCcCceEECCCCC---EEEEEeCCCCCceEEEEECCCCCe-EEee---------------
Confidence 59999998887654 444455778999999987 5655544 4555555 5555432 1221
Q ss_pred CCCCCCCCCceEEEEEcCCCCEEEEecCC---CcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccc
Q 000270 385 SSSAGPQSHQIFCCAFNANGTVFVTGSSD---TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFS 461 (1749)
Q Consensus 385 ~~s~~~h~~~Vt~LafSPDG~~LaSGs~D---GtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s 461 (1749)
.......+.+|+|||++|+..+.+ ..|.+||+.++. ...+... .......|+|++
T Consensus 328 -----~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~----------~~~Lt~~-~~~~~p~~SpDG------ 385 (429)
T PRK03629 328 -----WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG----------VQVLTDT-FLDETPSIAPNG------ 385 (429)
T ss_pred -----cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC----------eEEeCCC-CCCCCceECCCC------
Confidence 112234578899999998876543 358888986532 1222211 123456799987
Q ss_pred cccCCCCCCCCcccccccCCCEEEEEeCCCc---EEEEecC
Q 000270 462 LADSSKEDSTPKFKNSWFCHDNIVTCSRDGS---AIIWIPR 499 (1749)
Q Consensus 462 ~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGt---IrIWDl~ 499 (1749)
..|+.++.++. +.++++.
T Consensus 386 --------------------~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 386 --------------------TMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred --------------------CEEEEEEcCCCceEEEEEECC
Confidence 67888777765 4555553
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.8e-09 Score=119.22 Aligned_cols=239 Identities=11% Similarity=0.160 Sum_probs=159.5
Q ss_pred EEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCC--eEEEEEcCCCcEEEE-EeCC------CeEEEEECCC
Q 000270 246 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD--ITDLAVSSNNALVAS-ASND------CIIRVWRLPD 316 (1749)
Q Consensus 246 Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~--VtsLafSPDg~lLAS-GS~D------GtIrVWDl~t 316 (1749)
...++|..|...++.|.++| .+||+++.-+.....+.+.+. +.-|-| -.++||. ||.+ ..|.|||=..
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEeccc
Confidence 44599999999999988777 899998764433332223332 222223 2334443 3333 4799999666
Q ss_pred CceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcC-CCcccceeecCCCCCcccCCCCCCCCCCCCCCCce
Q 000270 317 GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR-YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395 (1749)
Q Consensus 317 gk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~-tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~V 395 (1749)
.+++..+. ...+|.+|.+.++ .|++.- .+.|.||... ..+.+..+... .....+
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r~-----riVvvl-~~~I~VytF~~n~k~l~~~et~------------------~NPkGl 139 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRRD-----RIVVVL-ENKIYVYTFPDNPKLLHVIETR------------------SNPKGL 139 (346)
T ss_pred CcEEEEEE-eccceeeEEEcCC-----eEEEEe-cCeEEEEEcCCChhheeeeecc------------------cCCCce
Confidence 67777776 6789999999997 455444 4679999887 33333333210 001113
Q ss_pred EEEEEcCCCCEEEE-ecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcc
Q 000270 396 FCCAFNANGTVFVT-GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 474 (1749)
Q Consensus 396 t~LafSPDG~~LaS-Gs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~ 474 (1749)
.+++-..+..+||. |-.-|.|.|-|+..... . ......+|...|.|++.+-+|
T Consensus 140 C~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~------~-~p~~I~AH~s~Iacv~Ln~~G------------------- 193 (346)
T KOG2111|consen 140 CSLCPTSNKSLLAFPGFKTGQVQIVDLASTKP------N-APSIINAHDSDIACVALNLQG------------------- 193 (346)
T ss_pred EeecCCCCceEEEcCCCccceEEEEEhhhcCc------C-CceEEEcccCceeEEEEcCCc-------------------
Confidence 33332333445554 44568999999965321 1 235678999999999999887
Q ss_pred cccccCCCEEEEEeCCCc-EEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCC
Q 000270 475 KNSWFCHDNIVTCSRDGS-AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 553 (1749)
Q Consensus 475 ~~s~~~~~~LaSgS~DGt-IrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~ 553 (1749)
..+||+|..|+ |||||..++..+.... --.....|.+++|||++.
T Consensus 194 -------t~vATaStkGTLIRIFdt~~g~~l~E~R---------------------------RG~d~A~iy~iaFSp~~s 239 (346)
T KOG2111|consen 194 -------TLVATASTKGTLIRIFDTEDGTLLQELR---------------------------RGVDRADIYCIAFSPNSS 239 (346)
T ss_pred -------cEEEEeccCcEEEEEEEcCCCcEeeeee---------------------------cCCchheEEEEEeCCCcc
Confidence 79999999997 7899998765332111 011234699999999999
Q ss_pred EEEEEeCCCeEEEEECCCC
Q 000270 554 FVLAAIMDCRICVWNAADG 572 (1749)
Q Consensus 554 ~LATGs~DGtI~VWDl~tg 572 (1749)
+||+++.-|+|+||.+...
T Consensus 240 ~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 240 WLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEEcCCCeEEEEEeecC
Confidence 9999999999999998653
|
|
| >KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.4e-12 Score=160.04 Aligned_cols=108 Identities=20% Similarity=0.306 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCC
Q 000270 1638 NKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGR 1717 (1749)
Q Consensus 1638 ~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~ 1717 (1749)
+++.+.+..++..+++|.++|+|..|+...++||||.+|++||||.||+.||.+++|..+++|+.|+.+||.||+-||++
T Consensus 605 ~~~~s~~~~il~~l~~h~~awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~~ 684 (720)
T KOG1472|consen 605 GKLFSAIQNILDQLQNHGDAWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNGS 684 (720)
T ss_pred chhhHHHHhHHhhhhcCCccCCccCccccccCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCCc
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccc
Q 000270 1718 NTDLSTKIKRLSDLVTRTLSSLKAPQFH 1745 (1749)
Q Consensus 1718 ~s~~~~~a~~l~~~~~~~l~~~~~~~~~ 1745 (1749)
++.++++|..|+++|..+++......++
T Consensus 685 ~~~y~k~~~~le~~~~~k~~~~i~~~~~ 712 (720)
T KOG1472|consen 685 DTQYYKCAQALEKFFLFKLNELILRVVQ 712 (720)
T ss_pred cchheecccchhhhhcchhhhhhhhhhc
Confidence 9999999999999999999887554433
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.2e-10 Score=126.36 Aligned_cols=227 Identities=15% Similarity=0.166 Sum_probs=163.7
Q ss_pred CCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCC---ceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEc-
Q 000270 284 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDG---LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA- 359 (1749)
Q Consensus 284 Hs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tg---k~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl- 359 (1749)
-..+|+|.||++|++.+|.+.....|.|+..... +...++..|...|++|.|.|..+ .|++++.|..-.+|..
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn---rIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN---RIVTCSHDRNAYVWTQP 85 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC---ceeEccCCCCccccccC
Confidence 4578999999999999999999999999987654 46788999999999999999987 8999999999999988
Q ss_pred CCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeee
Q 000270 360 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVL 439 (1749)
Q Consensus 360 ~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l 439 (1749)
..+.-.+++. ...++...+|+.|+|.++.||+|+....|.||-+...+. =......-
T Consensus 86 ~~~~Wkptlv------------------LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd-----WWVsKhik 142 (361)
T KOG1523|consen 86 SGGTWKPTLV------------------LLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND-----WWVSKHIK 142 (361)
T ss_pred CCCeecccee------------------EEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc-----eehhhhhC
Confidence 4444444433 245678899999999999999999999999998853210 01111223
Q ss_pred cCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCC
Q 000270 440 SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVP 519 (1749)
Q Consensus 440 ~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~ 519 (1749)
..+...|.++.|+|+. -+|++|+.|+..+++..--.. +.
T Consensus 143 kPirStv~sldWhpnn--------------------------VLlaaGs~D~k~rVfSayIK~---------------Vd 181 (361)
T KOG1523|consen 143 KPIRSTVTSLDWHPNN--------------------------VLLAAGSTDGKCRVFSAYIKG---------------VD 181 (361)
T ss_pred CccccceeeeeccCCc--------------------------ceecccccCcceeEEEEeeec---------------cc
Confidence 4566778888888876 477888888888887532100 00
Q ss_pred CCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEE
Q 000270 520 PPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAM 599 (1749)
Q Consensus 520 ~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLa 599 (1749)
..+ +-+|-|.. +.-|.++.++....+.|..+.|+| .+..|+
T Consensus 182 ekp------------------------ap~pWgsk--------------~PFG~lm~E~~~~ggwvh~v~fs~-sG~~la 222 (361)
T KOG1523|consen 182 EKP------------------------APTPWGSK--------------MPFGQLMSEASSSGGWVHGVLFSP-SGNRLA 222 (361)
T ss_pred cCC------------------------CCCCCccC--------------CcHHHHHHhhccCCCceeeeEeCC-CCCEee
Confidence 000 00011100 111344444545567899999999 566677
Q ss_pred EEeCCCcEEEEeCCCCc
Q 000270 600 SAGYDGKTIVWDIWEGI 616 (1749)
Q Consensus 600 Sgs~DGtIrVWDl~tGk 616 (1749)
=.+.|..|.+=|.....
T Consensus 223 wv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 223 WVGHDSTVSFVDAAGPS 239 (361)
T ss_pred EecCCCceEEeecCCCc
Confidence 78999999999876654
|
|
| >KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.7e-12 Score=169.87 Aligned_cols=93 Identities=13% Similarity=0.242 Sum_probs=87.7
Q ss_pred HHHHHHhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHH
Q 000270 1644 FAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLST 1723 (1749)
Q Consensus 1644 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~~s~~~~ 1723 (1749)
+..|+..+..|.++|||+.||+...+|+||.||++||||.||+.+|.-+.|.+.++|..||+|||.||++||++ |.|++
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i~~ 1384 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEIGR 1384 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhhcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhhhh
Confidence 56777777889999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHh
Q 000270 1724 KIKRLSDLVTRTLS 1737 (1749)
Q Consensus 1724 ~a~~l~~~~~~~l~ 1737 (1749)
.+-.|.++|.....
T Consensus 1385 ag~~l~~ff~~~~~ 1398 (1404)
T KOG1245|consen 1385 AGTCLRRFFHKRWR 1398 (1404)
T ss_pred hcchHHHHHHHHHH
Confidence 99999999986443
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.9e-10 Score=130.58 Aligned_cols=258 Identities=13% Similarity=0.162 Sum_probs=176.1
Q ss_pred CCCeEEEEEcCCCc--EEEEEeCCCeEEEEECCCCceEEE------ecCCCCceEEEEeccCCCcceEEEeecCCCcEEE
Q 000270 285 EGDITDLAVSSNNA--LVASASNDCIIRVWRLPDGLPISV------LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356 (1749)
Q Consensus 285 s~~VtsLafSPDg~--lLASGS~DGtIrVWDl~tgk~l~t------L~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrI 356 (1749)
...|+.++|.-+++ .|+..+.+..+....+....+... .....++|..++.... .|++|-.+|.+.+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg-----~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADG-----TLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCC-----EEEEEecCCcEEE
Confidence 45677777765543 455554666677666665544433 3345667777776643 7899999999999
Q ss_pred EEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCC-CEEEEecCC--CcEEEEeCCCCCCCCCCCCC
Q 000270 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSD--TLARVWNACKPNTDDSDQPN 433 (1749)
Q Consensus 357 WDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG-~~LaSGs~D--GtVrIWDl~t~~~~~s~~~~ 433 (1749)
|....+........ .-....++..+.-++.. .++|+|+.. ..+.|||+......-....
T Consensus 130 ~~~k~~d~hss~l~-----------------~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKN- 191 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLI-----------------KLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKN- 191 (412)
T ss_pred EeccCCccccccce-----------------eeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccC-
Confidence 99875542111000 00112345555555543 466679988 8899999965321100000
Q ss_pred cceeeecCC--CCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccc
Q 000270 434 HEIDVLSGH--ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 511 (1749)
Q Consensus 434 ~~i~~l~gH--~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~ 511 (1749)
...-.-+- .-.++.+.|.+.. .+..|++++.-+.+++||++.++
T Consensus 192 -vpnD~L~LrVPvW~tdi~Fl~g~------------------------~~~~fat~T~~hqvR~YDt~~qR--------- 237 (412)
T KOG3881|consen 192 -VPNDRLGLRVPVWITDIRFLEGS------------------------PNYKFATITRYHQVRLYDTRHQR--------- 237 (412)
T ss_pred -CCCccccceeeeeeccceecCCC------------------------CCceEEEEecceeEEEecCcccC---------
Confidence 00000011 1234455565542 03689999999999999998644
Q ss_pred cccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEE-ecCCCCCeEEEEE
Q 000270 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHS-LTGHTESTYVLDV 590 (1749)
Q Consensus 512 ~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~t-L~gH~~~VtsLaf 590 (1749)
.|+..+.....+|+++...|+|++|++|..-+.+..||.+.++++.. +.|-++.|.+|..
T Consensus 238 -------------------RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~ 298 (412)
T KOG3881|consen 238 -------------------RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHC 298 (412)
T ss_pred -------------------cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEE
Confidence 33444455577899999999999999999999999999999998876 8999999999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCceEE
Q 000270 591 HPFNPRIAMSAGYDGKTIVWDIWEGIPIR 619 (1749)
Q Consensus 591 SPdd~rlLaSgs~DGtIrVWDl~tGk~l~ 619 (1749)
|| ...+|+++|-|..|||+|+.+.+++.
T Consensus 299 hp-~~~~las~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 299 HP-THPVLASCGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred cC-CCceEEeeccceeEEEeecccchhhh
Confidence 99 77899999999999999998866553
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.4e-09 Score=129.23 Aligned_cols=387 Identities=12% Similarity=0.154 Sum_probs=249.0
Q ss_pred CCEEEEEECCCCCEEEEEeCCcEEEEEECCCCe---------------EEEEEccCCCCeEEEEEcCCCcEEEEEeCCCe
Q 000270 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY---------------CLASCRGHEGDITDLAVSSNNALVASASNDCI 308 (1749)
Q Consensus 244 ~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~---------------~l~tL~gHs~~VtsLafSPDg~lLASGS~DGt 308 (1749)
....|++|+....|+|+|+.||.++|..+.+.. .-+++.||.+.|.-+.|+.+.+.|-+...+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 457899999999999999999999999876421 12467899999999999999999999999999
Q ss_pred EEEEECCCCceEEEe--cCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCC
Q 000270 309 IRVWRLPDGLPISVL--RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1749)
Q Consensus 309 IrVWDl~tgk~l~tL--~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~ 386 (1749)
|.||=+-.|.-...+ ....+.|.+++|..+|. .++....||.|.+=.++..+.- |..
T Consensus 95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~---kIcIvYeDGavIVGsvdGNRIw-------------gKe----- 153 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT---KICIVYEDGAVIVGSVDGNRIW-------------GKE----- 153 (1189)
T ss_pred EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc---EEEEEEccCCEEEEeeccceec-------------chh-----
Confidence 999988666422211 22456789999999997 7888888998887666543311 100
Q ss_pred CCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCc---ceeeecCCCCCeEEEEEcCCCcccccccc
Q 000270 387 SAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNH---EIDVLSGHENDVNYVQFSGCAVASRFSLA 463 (1749)
Q Consensus 387 s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~---~i~~l~gH~~~V~sVafSpdg~as~~s~~ 463 (1749)
-.......+.|++|...++.+-..|.+.+||....-... ..... ....+......|-.+.|.....
T Consensus 154 ---Lkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~K-l~~~c~Vn~tg~~s~~~~kia~i~w~~g~~------- 222 (1189)
T KOG2041|consen 154 ---LKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERK-LEKDCEVNGTGIFSNFPTKIAEIEWNTGPY------- 222 (1189)
T ss_pred ---cchheccceeecccHHHHHhhhcCCcEEEecccccHHHh-hhhceEEeeeeeecCCCccccceeeccCcc-------
Confidence 012224578899999988888899999999974211000 00000 0011111222344455543210
Q ss_pred cCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCe
Q 000270 464 DSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGV 543 (1749)
Q Consensus 464 ~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~V 543 (1749)
.........|+.+-..|.+.|..-.+.. ...+....-.|
T Consensus 223 -----------~~v~pdrP~lavcy~nGr~QiMR~eND~------------------------------~Pvv~dtgm~~ 261 (1189)
T KOG2041|consen 223 -----------QPVPPDRPRLAVCYANGRMQIMRSENDP------------------------------EPVVVDTGMKI 261 (1189)
T ss_pred -----------ccCCCCCCEEEEEEcCceehhhhhcCCC------------------------------CCeEEecccEe
Confidence 0111123589999999998886433211 11122233568
Q ss_pred eEEEEcCCCCEEEEEeCCC---------eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 000270 544 NMIVWSLDNRFVLAAIMDC---------RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1749)
Q Consensus 544 tsVafSPDG~~LATGs~DG---------tI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~t 614 (1749)
..+.|+++|.+||+++.+. .|++|. .-|+.+.+|+.....|++++|-. .+..++ -..|+.|.+=++.-
T Consensus 262 vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg-~gLriA-~AvdsfiyfanIRP 338 (1189)
T KOG2041|consen 262 VGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEG-TGLRIA-IAVDSFIYFANIRP 338 (1189)
T ss_pred ecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcC-CceEEE-EEecceEEEEeecc
Confidence 8899999999999998543 466665 35888899998889999999976 333333 34588888766643
Q ss_pred CceEEEEeeeeccCCCEEEEE-c---CCCeEEEEECCCCcccccccc---eeeecCCCcceeEcCCCcEEecccccCCCC
Q 000270 615 GIPIRIYEISRFRDGASIILS-D---DVGQLYILNTGQGESQKDAKY---DQFFLGDYRPLVQDTYGNVLDQETQLAPHR 687 (1749)
Q Consensus 615 Gk~l~tl~~~~~sDG~~LAsg-d---~DG~I~IWdl~tGe~~k~~~~---~~fFs~D~r~Lv~d~~G~Vld~~tq~~Phl 687 (1749)
.-.-..+. .+.+.+- . -...|.+||+.+.+...+... ...|..+...|+......++.+...+....
T Consensus 339 ~ykWgy~e------~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~ 412 (1189)
T KOG2041|consen 339 EYKWGYIE------ETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDGVIPEYSTLENRS 412 (1189)
T ss_pred cceEEEee------eEEEEEEccCCCcceEEEEEecccChhhhhhhcceeehheecccEEEEeccccCCCcchhhhhccc
Confidence 21111111 1111111 1 124788999988776533332 256788888886555444444444444445
Q ss_pred CCCCCccccCCCCCCCCcchhhhhh
Q 000270 688 RNLQDPLCDSAMIPYPEPYQTMYQQ 712 (1749)
Q Consensus 688 ~~~~~ll~D~~g~P~p~~~Q~l~p~ 712 (1749)
+.+.-.||.+.|.|....|....|.
T Consensus 413 ~~~~l~LCNSIGT~lD~kytdirP~ 437 (1189)
T KOG2041|consen 413 RVYFLQLCNSIGTSLDYKYTDIRPK 437 (1189)
T ss_pred ceEEEeeecccCCcCCCCcceeeee
Confidence 5556678999998888888776554
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.8e-09 Score=123.67 Aligned_cols=341 Identities=13% Similarity=0.170 Sum_probs=207.5
Q ss_pred CCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCC-c----eEEEecCCC------------CceEEEEeccCCCcceEEEe
Q 000270 285 EGDITDLAVSSNNALVASASNDCIIRVWRLPDG-L----PISVLRGHT------------AAVTAIAFSPRPGSVYQLLS 347 (1749)
Q Consensus 285 s~~VtsLafSPDg~lLASGS~DGtIrVWDl~tg-k----~l~tL~gHs------------~~VtsIaFSPdg~~~~~LaS 347 (1749)
..-|.++.|...|.+||+|..+|.|.++.-... + ....++.|. ..|..|.|.++++.. .++.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a-~FLl 103 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA-EFLL 103 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc-EEEE
Confidence 456889999999999999999999999963321 1 233444443 368899999998755 5666
Q ss_pred ecCCCcEEEEEcCCCcccce-eecCC--CCCccc-------C------CCCCCCCCCCCCCCceEEEEEcCCCCEEEEec
Q 000270 348 SSDDGTCRIWDARYSQFSPR-IYIPR--PSDAVA-------G------RNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS 411 (1749)
Q Consensus 348 gS~DGtIrIWDl~tg~~l~~-l~~~~--~~~~~~-------g------~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs 411 (1749)
.+.|.+|++|.+........ ..++. +...+. + ...........|..-|.+++++.|+..++++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA- 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA- 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence 78899999998865432220 00000 000000 0 0000011234577789999999999999877
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCcceeeecCC-----CCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEE
Q 000270 412 SDTLARVWNACKPNTDDSDQPNHEIDVLSGH-----ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVT 486 (1749)
Q Consensus 412 ~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH-----~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaS 486 (1749)
.|-.|.+|++.-.. +... +.-.+.+ ..-|++..|+|.. -+.|+.
T Consensus 183 DdLRINLWnlei~d-----~sFn-IVDIKP~nmEeLteVITsaEFhp~~-------------------------cn~f~Y 231 (433)
T KOG1354|consen 183 DDLRINLWNLEIID-----QSFN-IVDIKPANMEELTEVITSAEFHPHH-------------------------CNVFVY 231 (433)
T ss_pred cceeeeeccccccC-----Ccee-EEEccccCHHHHHHHHhhhccCHhH-------------------------ccEEEE
Confidence 47889999985321 1111 1111222 2346666677643 268999
Q ss_pred EeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEE
Q 000270 487 CSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICV 566 (1749)
Q Consensus 487 gS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~V 566 (1749)
.+..|+|+|.|++.....- ....+...+.......-+..-...|..+.|+++|+||++-.. -+|+|
T Consensus 232 SSSKGtIrLcDmR~~aLCd-------------~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~ 297 (433)
T KOG1354|consen 232 SSSKGTIRLCDMRQSALCD-------------AHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKL 297 (433)
T ss_pred ecCCCcEEEeechhhhhhc-------------chhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEE
Confidence 9999999999998533110 001111112222223333344457899999999999998764 68999
Q ss_pred EEC-CCCceEEEecCCC------------CCe---EEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceEE-EEeeeecc--
Q 000270 567 WNA-ADGSLVHSLTGHT------------EST---YVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR-IYEISRFR-- 627 (1749)
Q Consensus 567 WDl-~tgklv~tL~gH~------------~~V---tsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l~-tl~~~~~s-- 627 (1749)
||+ ...+++.++.-|. +.| ..++|+- +..+++||+....++++++..|.... ++....-+
T Consensus 298 wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~ 376 (433)
T KOG1354|consen 298 WDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMK 376 (433)
T ss_pred EeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecCCCCcceeecccccccCCc
Confidence 999 5667777776653 223 5578887 66788899999999999987775432 22221111
Q ss_pred -----CCCEEEEEcCCCeEEEEECCCCcccccccceeeecCCCcceeEcCCCc
Q 000270 628 -----DGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGN 675 (1749)
Q Consensus 628 -----DG~~LAsgd~DG~I~IWdl~tGe~~k~~~~~~fFs~D~r~Lv~d~~G~ 675 (1749)
.-+.+.+++.....-+|-.. -......+...|+|.-..++..+..+
T Consensus 377 ~~~~~k~~~V~~~g~r~~~~~~vd~--ldf~kkilh~aWhp~en~ia~aatnn 427 (433)
T KOG1354|consen 377 PRKVLKLRLVSSSGKRKRDEISVDA--LDFRKKILHTAWHPKENSIAVAATNN 427 (433)
T ss_pred ccccccceeeecCCCccccccccch--hhhhhHHHhhccCCccceeeeeecCc
Confidence 33444455554443332210 01122334467888877775554333
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-09 Score=134.49 Aligned_cols=186 Identities=17% Similarity=0.099 Sum_probs=129.4
Q ss_pred cceEEEEccCCCCEEEEEECCCCCEEEEEeC---CcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEE-EEeCCCe
Q 000270 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSD---DRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVA-SASNDCI 308 (1749)
Q Consensus 233 ~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~---DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLA-SGS~DGt 308 (1749)
....+.+..|...|.+.+|+|||+.|+..+. +..|.+||+.++.. ..+..+.+.+.+.+|+|||+.|+ +.+.++.
T Consensus 191 g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~ 269 (435)
T PRK05137 191 GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGN 269 (435)
T ss_pred CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCEEEEEEecCCC
Confidence 4456778889999999999999999988764 46899999998865 34556677888999999998775 4555554
Q ss_pred --EEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeec-CCC--cEEEEEcCCCcccceeecCCCCCcccCCCCC
Q 000270 309 --IRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS-DDG--TCRIWDARYSQFSPRIYIPRPSDAVAGRNMA 383 (1749)
Q Consensus 309 --IrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS-~DG--tIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~ 383 (1749)
|.+||+.++.. ..+..+.+......|+||+. .|+.++ .+| .|.+||+.++.. ..+..
T Consensus 270 ~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~---~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~------------- 331 (435)
T PRK05137 270 TDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGS---QIVFESDRSGSPQLYVMNADGSNP-RRISF------------- 331 (435)
T ss_pred ceEEEEECCCCce-EEccCCCCccCceeEcCCCC---EEEEEECCCCCCeEEEEECCCCCe-EEeec-------------
Confidence 77889887765 44555666778899999987 555444 333 577778765543 22210
Q ss_pred CCCCCCCCCCceEEEEEcCCCCEEEEecCC---CcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCC
Q 000270 384 PSSSAGPQSHQIFCCAFNANGTVFVTGSSD---TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCA 455 (1749)
Q Consensus 384 ~~~s~~~h~~~Vt~LafSPDG~~LaSGs~D---GtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg 455 (1749)
....+....|+|+|+.|+....+ ..|.+|++.... ...+. ....+....|+|++
T Consensus 332 -------~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~----------~~~lt-~~~~~~~p~~spDG 388 (435)
T PRK05137 332 -------GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG----------ERILT-SGFLVEGPTWAPNG 388 (435)
T ss_pred -------CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc----------eEecc-CCCCCCCCeECCCC
Confidence 12335567899999999876543 357888874321 11121 12246678899987
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2e-09 Score=135.35 Aligned_cols=186 Identities=13% Similarity=0.067 Sum_probs=125.6
Q ss_pred cceEEEEccCCCCEEEEEECCCCCEEEEEeC---CcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEE-EEeCCC-
Q 000270 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSD---DRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVA-SASNDC- 307 (1749)
Q Consensus 233 ~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~---DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLA-SGS~DG- 307 (1749)
....+.|..|...|.+.+|+|||+.|+.++. ...|.+||+.++.... +..+.+...+++|+|||+.|+ +.+.+|
T Consensus 193 g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~ 271 (433)
T PRK04922 193 GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGN 271 (433)
T ss_pred CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCC
Confidence 3455677788889999999999999998764 3479999998876533 334455566889999998775 445555
Q ss_pred -eEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeec-CCCc--EEEEEcCCCcccceeecCCCCCcccCCCCC
Q 000270 308 -IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS-DDGT--CRIWDARYSQFSPRIYIPRPSDAVAGRNMA 383 (1749)
Q Consensus 308 -tIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS-~DGt--IrIWDl~tg~~l~~l~~~~~~~~~~g~~~~ 383 (1749)
.|.+||+.+++. ..+..+......++|+||++ .|+.++ .+|. |.++++.++... .+..
T Consensus 272 ~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~---~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~------------- 333 (433)
T PRK04922 272 PEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGK---SIYFTSDRGGRPQIYRVAASGGSAE-RLTF------------- 333 (433)
T ss_pred ceEEEEECCCCCe-EECccCCCCccceEECCCCC---EEEEEECCCCCceEEEEECCCCCeE-Eeec-------------
Confidence 599999988875 34555666667899999987 565544 4555 555666655422 2210
Q ss_pred CCCCCCCCCCceEEEEEcCCCCEEEEecCCC---cEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCC
Q 000270 384 PSSSAGPQSHQIFCCAFNANGTVFVTGSSDT---LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCA 455 (1749)
Q Consensus 384 ~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DG---tVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg 455 (1749)
.......++|+|+|++|+..+.++ .|.+|++.++. ...+. +........|+|++
T Consensus 334 -------~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~----------~~~Lt-~~~~~~~p~~spdG 390 (433)
T PRK04922 334 -------QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS----------VRTLT-PGSLDESPSFAPNG 390 (433)
T ss_pred -------CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC----------eEECC-CCCCCCCceECCCC
Confidence 112244689999999988765433 58999986532 11222 22234456899987
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.1e-09 Score=137.73 Aligned_cols=335 Identities=17% Similarity=0.212 Sum_probs=200.2
Q ss_pred EEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEE-EecCCC
Q 000270 249 AIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS-VLRGHT 327 (1749)
Q Consensus 249 VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~-tL~gHs 327 (1749)
+-++++.-++++|+.-+.|.+|+......-..+.||.+.|.++.|+-||.++++.|.|.+||+|++.+++.+. +.-+|+
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs 218 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS 218 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc
Confidence 3356777899999999999999987333333688999999999999999999999999999999999988776 777899
Q ss_pred CceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEE
Q 000270 328 AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVF 407 (1749)
Q Consensus 328 ~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~L 407 (1749)
+.|..+.|.|. .+++++.|.++++|+...... ..+ .......|+.++..++...+
T Consensus 219 aRvw~~~~~~n-----~i~t~gedctcrvW~~~~~~l-~~y-------------------~~h~g~~iw~~~~~~~~~~~ 273 (967)
T KOG0974|consen 219 ARVWACCFLPN-----RIITVGEDCTCRVWGVNGTQL-EVY-------------------DEHSGKGIWKIAVPIGVIIK 273 (967)
T ss_pred ceeEEEEeccc-----eeEEeccceEEEEEeccccee-hhh-------------------hhhhhcceeEEEEcCCceEE
Confidence 99999999996 699999999999997653322 121 12234568999999999999
Q ss_pred EEecCCCcEEEEeCCCCCCCCCCCCCc-----------------ceeeecCCCCCeEEEEEcCCCcccccccccCCCCCC
Q 000270 408 VTGSSDTLARVWNACKPNTDDSDQPNH-----------------EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDS 470 (1749)
Q Consensus 408 aSGs~DGtVrIWDl~t~~~~~s~~~~~-----------------~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~ 470 (1749)
+|++.||.+++|++............. .+..+..|.. ..++ ..+.+ ...........
T Consensus 274 vT~g~Ds~lk~~~l~~r~~e~~~~~~~~~~s~~kl~~~~f~k~~~~~~~~~~~~-~~~~-~~~~~----~~~l~~~~~~s 347 (967)
T KOG0974|consen 274 VTGGNDSTLKLWDLNGRGLEGHVEQSSLLSSIVKLKDDQFVKCDTLLNFANHGG-KLSI-LGNKG----EKELITFESDS 347 (967)
T ss_pred EeeccCcchhhhhhhccccccceeeeeeecchhhhcceeeeehHHHHHHHhcCC-eEee-ccccc----ccceeeeeecc
Confidence 999999999999985422110000000 0001111211 0000 00000 00000011112
Q ss_pred CCcccccccCCCEEEEEeCCCcEEEEecCCCCCCcccc---ccccccc-----------cCCCCCCCC----------CC
Q 000270 471 TPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAA---RWTQAYH-----------LKVPPPPMP----------PQ 526 (1749)
Q Consensus 471 ~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~---~~~~~~~-----------l~v~~~~~~----------~~ 526 (1749)
...+...+...++++.++..+.+.+.-+......+... .+..... ..+.+.... ..
T Consensus 348 ~~~i~~~~~~~~~v~~~~~k~~~~v~~~~~~~~~~~~~~h~~~s~~~~~~~~~~~~~~~~~~~g~~~~r~~~~~~~~~ad 427 (967)
T KOG0974|consen 348 MLRIIFSCTNDDWVAHMSNKGDIYVAWHQNTIVITTSSLHRKLSANPISQVCEASYVASKLIDGSIQVRNLSGSLESFAD 427 (967)
T ss_pred CccceehccccceeeeccCCCcEEEEEeecccCccchhHHHHHhhCcccceeeeeeehhhccCCcchhhhhhcccccccc
Confidence 22333445555677777777766664433221111000 0000000 000000000 00
Q ss_pred CCCCCCcccc-cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceE--------EEecCCCCCeEEEEEcCCCCcE
Q 000270 527 PPRGGPRQRI-LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLV--------HSLTGHTESTYVLDVHPFNPRI 597 (1749)
Q Consensus 527 ~~~g~~i~~l-~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv--------~tL~gH~~~VtsLafSPdd~rl 597 (1749)
...-.....+ .+....+.++.-.+.+..++.|+.-|.|.++++..+... +.+.+|++ +..+. +.++..+
T Consensus 428 ~~~i~~~~~f~~~~~~~~~~l~~~~~~~~~l~Gs~~g~lv~~~l~~~~~~~~~~~~~~~~~~~~~s-i~~~~-~kdn~~~ 505 (967)
T KOG0974|consen 428 VLNIRSLKEFRLPFAFRIPCLTSVVEDNLILIGSRHGELVLYNLDEPNDDIVLSLSRSHELDTGSS-ITCIR-SKDNSAI 505 (967)
T ss_pred eeEEeeeeeeccccCCCCcceecccCcceEEEccCcCcEEEecCCCCCccceeeccCccccccccc-EEEEe-cCCCcEE
Confidence 0000001111 122334666766777789999999999999999765432 23333333 33332 3336678
Q ss_pred EEEEeCCCcEEEEeCCCCc
Q 000270 598 AMSAGYDGKTIVWDIWEGI 616 (1749)
Q Consensus 598 LaSgs~DGtIrVWDl~tGk 616 (1749)
+.+.+.||.+-+..+..+.
T Consensus 506 ~~~~g~dg~~~~~~~~r~~ 524 (967)
T KOG0974|consen 506 FMTTGRDGYWSTIELIRGG 524 (967)
T ss_pred EEEecCCcEEEEEEEecCc
Confidence 8888999988888776543
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.9e-09 Score=129.47 Aligned_cols=234 Identities=15% Similarity=0.050 Sum_probs=149.0
Q ss_pred CcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCC---CeEEEEECCCCceEEEecCCCCceEEEEeccCCC
Q 000270 264 DRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPG 340 (1749)
Q Consensus 264 DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~D---GtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~ 340 (1749)
...|.++|... ...+.+..+...+.+.+|+|||++||.++.. ..|.+||+.+++... +..+.+.+.+++|+|+++
T Consensus 169 ~~~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 169 RYELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGS 246 (417)
T ss_pred cceEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence 34688888764 4455566677789999999999999987654 479999999886543 334556677899999987
Q ss_pred cceEEEeecCCC--cEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecC-CC--c
Q 000270 341 SVYQLLSSSDDG--TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DT--L 415 (1749)
Q Consensus 341 ~~~~LaSgS~DG--tIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~-DG--t 415 (1749)
.++++.+.++ .|.+|++.++.... +. .+.......+|+|+|+.|+.++. .+ .
T Consensus 247 --~l~~~~~~~~~~~i~~~d~~~~~~~~-l~--------------------~~~~~~~~~~~s~dg~~l~~~s~~~g~~~ 303 (417)
T TIGR02800 247 --KLAVSLSKDGNPDIYVMDLDGKQLTR-LT--------------------NGPGIDTEPSWSPDGKSIAFTSDRGGSPQ 303 (417)
T ss_pred --EEEEEECCCCCccEEEEECCCCCEEE-CC--------------------CCCCCCCCEEECCCCCEEEEEECCCCCce
Confidence 2334445444 58888887764221 11 11122345689999998876654 33 5
Q ss_pred EEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCC---c
Q 000270 416 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG---S 492 (1749)
Q Consensus 416 VrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG---t 492 (1749)
|++|++.++. ...+..+...+..+.|+|++ +.|+.++.++ .
T Consensus 304 iy~~d~~~~~----------~~~l~~~~~~~~~~~~spdg--------------------------~~i~~~~~~~~~~~ 347 (417)
T TIGR02800 304 IYMMDADGGE----------VRRLTFRGGYNASPSWSPDG--------------------------DLIAFVHREGGGFN 347 (417)
T ss_pred EEEEECCCCC----------EEEeecCCCCccCeEECCCC--------------------------CEEEEEEccCCceE
Confidence 7777765321 22334445566778899887 6777777665 6
Q ss_pred EEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCC---eEEEEEC
Q 000270 493 AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC---RICVWNA 569 (1749)
Q Consensus 493 IrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DG---tI~VWDl 569 (1749)
|.+||+.++.. ..+. ........+|+|||++|+.++.++ .+++.+.
T Consensus 348 i~~~d~~~~~~------------------------------~~l~-~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 348 IAVMDLDGGGE------------------------------RVLT-DTGLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred EEEEeCCCCCe------------------------------EEcc-CCCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 77887765220 0000 011123457999999998887654 4556554
Q ss_pred CCCceEEEecCCCCCeEEEEE
Q 000270 570 ADGSLVHSLTGHTESTYVLDV 590 (1749)
Q Consensus 570 ~tgklv~tL~gH~~~VtsLaf 590 (1749)
+|.....+..+.+.+..++|
T Consensus 397 -~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 397 -DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred -CCceeeECCCCCCCcCCCCC
Confidence 45556666555555555554
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.2e-09 Score=123.08 Aligned_cols=338 Identities=18% Similarity=0.237 Sum_probs=199.8
Q ss_pred CCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCe-----EEEEEccCC------------CCeEEEEEcCCCc--EEEEE
Q 000270 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY-----CLASCRGHE------------GDITDLAVSSNNA--LVASA 303 (1749)
Q Consensus 243 ~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~-----~l~tL~gHs------------~~VtsLafSPDg~--lLASG 303 (1749)
.+-|.+|.|+-+|.+||||..+|.|.++.-.... ....++.|. ..|..+.|.+++. .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 3568999999999999999999999999654322 334455554 4578899998654 56677
Q ss_pred eCCCeEEEEECCCCc-----------------------------------eEEEe-cCCCCceEEEEeccCCCcceEEEe
Q 000270 304 SNDCIIRVWRLPDGL-----------------------------------PISVL-RGHTAAVTAIAFSPRPGSVYQLLS 347 (1749)
Q Consensus 304 S~DGtIrVWDl~tgk-----------------------------------~l~tL-~gHs~~VtsIaFSPdg~~~~~LaS 347 (1749)
+.|.+|++|.+.... +.+++ .+|+--|++|.+..|.. .+++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E---t~lS 181 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE---TFLS 181 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc---eEee
Confidence 789999999874310 00111 25788899999999976 5555
Q ss_pred ecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCC-CCEEEEecCCCcEEEEeCCCCCC
Q 000270 348 SSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNACKPNT 426 (1749)
Q Consensus 348 gS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPD-G~~LaSGs~DGtVrIWDl~t~~~ 426 (1749)
..|=.|-+|++.-......+.--.|... ..-..-|++..|+|. ..+|+-.+..|+|++.|++....
T Consensus 182 -ADdLRINLWnlei~d~sFnIVDIKP~nm------------EeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aL 248 (433)
T KOG1354|consen 182 -ADDLRINLWNLEIIDQSFNIVDIKPANM------------EELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSAL 248 (433)
T ss_pred -ccceeeeeccccccCCceeEEEccccCH------------HHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhh
Confidence 4567799999875443333321111110 111234788899994 46788888999999999974321
Q ss_pred CC-------CCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecC
Q 000270 427 DD-------SDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPR 499 (1749)
Q Consensus 427 ~~-------s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~ 499 (1749)
.. ..........+.+--..|..+.|++.| +++++-. =-+|++||+.
T Consensus 249 Cd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG--------------------------ryilsRD-yltvk~wD~n 301 (433)
T KOG1354|consen 249 CDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG--------------------------RYILSRD-YLTVKLWDLN 301 (433)
T ss_pred hcchhhhhccccCCcchhhHHHHhhhhhceEEccCC--------------------------cEEEEec-cceeEEEecc
Confidence 10 000011111122333467788888876 5666532 2589999985
Q ss_pred CCC-CCccccccccccccCCCCCCCCCCCCCCCCcccccC--CCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceE-
Q 000270 500 SRR-SHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP--TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLV- 575 (1749)
Q Consensus 500 s~k-~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~--h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv- 575 (1749)
... +.......... . ..+..+.. ..-.-..++|+.++.+++||+....+++|++..|...
T Consensus 302 me~~pv~t~~vh~~l---------------r-~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d 365 (433)
T KOG1354|consen 302 MEAKPVETYPVHEYL---------------R-SKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKED 365 (433)
T ss_pred ccCCcceEEeehHhH---------------H-HHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCccee
Confidence 322 11110000000 0 00000000 0012346889999999999999999999998766543
Q ss_pred EEecCCCCC--eEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeeeccCCCEEEEEcCCCeEEEE
Q 000270 576 HSLTGHTES--TYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRDGASIILSDDVGQLYIL 644 (1749)
Q Consensus 576 ~tL~gH~~~--VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~~~sDG~~LAsgd~DG~I~IW 644 (1749)
.++...... ...+ ...+.+.++|......+|--.-.-....+...|+|..+.+|++... .++||
T Consensus 366 ~tl~asr~~~~~~~~----~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aatn-nlyif 431 (433)
T KOG1354|consen 366 FTLEASRKNMKPRKV----LKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIAVAATN-NLYIF 431 (433)
T ss_pred ecccccccCCccccc----ccceeeecCCCccccccccchhhhhhHHHhhccCCccceeeeeecC-ceEEe
Confidence 233332222 2222 1335566666555544442211112234555678877888877664 55655
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=5e-09 Score=122.35 Aligned_cols=271 Identities=12% Similarity=0.091 Sum_probs=187.7
Q ss_pred CCCEEEEEECCCCC--EEEEEeCCcEEEEEECCCCeEEEE------EccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEEC
Q 000270 243 RNAVYCAIFDRSGR--YVITGSDDRLVKIWSMETAYCLAS------CRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314 (1749)
Q Consensus 243 ~~~Vt~VaFSPDG~--~LATGS~DGtVrIWDl~Tg~~l~t------L~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl 314 (1749)
...|..++|.-+++ .|...+.|..+..+.+....+... .....+.|..++.. |+ .|++|-.+|.+.+|.+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC-EEEEEecCCcEEEEec
Confidence 45577777766553 455554666777777766554433 34456778777765 34 5677788999999998
Q ss_pred CCCc----eEEEecCCCCceEEEEeccCCCcceEEEeecCC--CcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCC
Q 000270 315 PDGL----PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD--GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 388 (1749)
Q Consensus 315 ~tgk----~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~D--GtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~ 388 (1749)
..+. .+..+..+ ..+..+.-++... +.+++|+.. ..+.|||+...+.+..-. +.......
T Consensus 133 k~~d~hss~l~~la~g-~g~~~~r~~~~~p--~Iva~GGke~~n~lkiwdle~~~qiw~aK-----------NvpnD~L~ 198 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATG-PGLYDVRQTDTDP--YIVATGGKENINELKIWDLEQSKQIWSAK-----------NVPNDRLG 198 (412)
T ss_pred cCCccccccceeeecC-CceeeeccCCCCC--ceEecCchhcccceeeeecccceeeeecc-----------CCCCcccc
Confidence 7542 33334433 4456666666543 477889998 889999998874332211 11111111
Q ss_pred CCCCCceEEEEEcCC--CCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCC
Q 000270 389 GPQSHQIFCCAFNAN--GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSS 466 (1749)
Q Consensus 389 ~~h~~~Vt~LafSPD--G~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~ 466 (1749)
-.-.-+++++.|-+. ...||+++.-+.|++||.+.+ .+++..+.-.+.+|.++...|.+
T Consensus 199 LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q--------RRPV~~fd~~E~~is~~~l~p~g----------- 259 (412)
T KOG3881|consen 199 LRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ--------RRPVAQFDFLENPISSTGLTPSG----------- 259 (412)
T ss_pred ceeeeeeccceecCCCCCceEEEEecceeEEEecCccc--------CcceeEeccccCcceeeeecCCC-----------
Confidence 122345788999887 789999999999999999753 34566666678889999888877
Q ss_pred CCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEE
Q 000270 467 KEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMI 546 (1749)
Q Consensus 467 ~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsV 546 (1749)
++|++|..-|.+..||+++++..+ ..+.+..+.|++|
T Consensus 260 ---------------n~Iy~gn~~g~l~~FD~r~~kl~g----------------------------~~~kg~tGsirsi 296 (412)
T KOG3881|consen 260 ---------------NFIYTGNTKGQLAKFDLRGGKLLG----------------------------CGLKGITGSIRSI 296 (412)
T ss_pred ---------------cEEEEecccchhheecccCceeec----------------------------cccCCccCCcceE
Confidence 899999999999999999755321 1245566789999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcC
Q 000270 547 VWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHP 592 (1749)
Q Consensus 547 afSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSP 592 (1749)
..+|.+++||+++-|..|+|+|+.+.++++..-- ...++.|.+.+
T Consensus 297 h~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~ 341 (412)
T KOG3881|consen 297 HCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRD 341 (412)
T ss_pred EEcCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEecC
Confidence 9999999999999999999999998776653321 12244555543
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.1e-09 Score=118.36 Aligned_cols=147 Identities=19% Similarity=0.288 Sum_probs=106.3
Q ss_pred EEEECCCCCEEEEEeC----------CcEEEEEECC-CCeEEEEEcc-CCCCeEEEEEcCCCcEEEEE--eCCCeEEEEE
Q 000270 248 CAIFDRSGRYVITGSD----------DRLVKIWSME-TAYCLASCRG-HEGDITDLAVSSNNALVASA--SNDCIIRVWR 313 (1749)
Q Consensus 248 ~VaFSPDG~~LATGS~----------DGtVrIWDl~-Tg~~l~tL~g-Hs~~VtsLafSPDg~lLASG--S~DGtIrVWD 313 (1749)
.+.|+++|++|+.-.. -|...||-+. .+..+..+.- ..++|.+++|+|+|+.||+. ..++.|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 4679999988775432 2345566552 2233444432 35579999999999987654 4567999999
Q ss_pred CCCCceEEEecCCCCceEEEEeccCCCcceEEEeecC---CCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCC
Q 000270 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD---DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGP 390 (1749)
Q Consensus 314 l~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~---DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~ 390 (1749)
+. ++.+..+. ...+..|.|+|+|+ +|++++. .|.|.+||+.+.+.+...
T Consensus 90 ~~-~~~i~~~~--~~~~n~i~wsP~G~---~l~~~g~~n~~G~l~~wd~~~~~~i~~~---------------------- 141 (194)
T PF08662_consen 90 VK-GKKIFSFG--TQPRNTISWSPDGR---FLVLAGFGNLNGDLEFWDVRKKKKISTF---------------------- 141 (194)
T ss_pred Cc-ccEeEeec--CCCceEEEECCCCC---EEEEEEccCCCcEEEEEECCCCEEeecc----------------------
Confidence 96 66666664 56788999999998 7777654 467999999976654433
Q ss_pred CCCceEEEEEcCCCCEEEEecC------CCcEEEEeCC
Q 000270 391 QSHQIFCCAFNANGTVFVTGSS------DTLARVWNAC 422 (1749)
Q Consensus 391 h~~~Vt~LafSPDG~~LaSGs~------DGtVrIWDl~ 422 (1749)
....++.++|+|+|++|+++.. |..++||+..
T Consensus 142 ~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 142 EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 1234789999999999998864 7888999984
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.5e-09 Score=129.53 Aligned_cols=211 Identities=16% Similarity=0.103 Sum_probs=130.8
Q ss_pred CeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecC---CCcEEEEEcCCCcccceeecCCCCCcccCCCCC
Q 000270 307 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD---DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMA 383 (1749)
Q Consensus 307 GtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~---DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~ 383 (1749)
..|.+||. +|.....+..+...+.+.+|+||++ .|+.++. ...|.+||+.+++.....
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~---~la~~s~~~~~~~I~~~dl~~g~~~~l~--------------- 236 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGT---KLAYVSFESKKPVVYVHDLATGRRRVVA--------------- 236 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCC---EEEEEEccCCCcEEEEEECCCCCEEEee---------------
Confidence 35777776 4555555666788899999999997 5655543 245999999887643211
Q ss_pred CCCCCCCCCCceEEEEEcCCCCEEE-EecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCccccccc
Q 000270 384 PSSSAGPQSHQIFCCAFNANGTVFV-TGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSL 462 (1749)
Q Consensus 384 ~~~s~~~h~~~Vt~LafSPDG~~La-SGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~ 462 (1749)
...+.+.+.+|+|||+.|+ +.+.+|...||.+... ......+..+...+....|+|++
T Consensus 237 ------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~--------~~~~~~lt~~~~~~~~~~wSpDG------- 295 (427)
T PRK02889 237 ------NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD--------GSGLRRLTQSSGIDTEPFFSPDG------- 295 (427)
T ss_pred ------cCCCCccceEECCCCCEEEEEEccCCCceEEEEECC--------CCCcEECCCCCCCCcCeEEcCCC-------
Confidence 0122356789999999887 4567887777665321 11233444555556678899987
Q ss_pred ccCCCCCCCCcccccccCCCEEEEEe-CCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCC
Q 000270 463 ADSSKEDSTPKFKNSWFCHDNIVTCS-RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR 541 (1749)
Q Consensus 463 ~~~~~~~~~~~~~~s~~~~~~LaSgS-~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~ 541 (1749)
+.|+..+ .+|...||.+.... .....+.....
T Consensus 296 -------------------~~l~f~s~~~g~~~Iy~~~~~~----------------------------g~~~~lt~~g~ 328 (427)
T PRK02889 296 -------------------RSIYFTSDRGGAPQIYRMPASG----------------------------GAAQRVTFTGS 328 (427)
T ss_pred -------------------CEEEEEecCCCCcEEEEEECCC----------------------------CceEEEecCCC
Confidence 5555444 45677777654210 00011111112
Q ss_pred CeeEEEEcCCCCEEEEEeCCC---eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 000270 542 GVNMIVWSLDNRFVLAAIMDC---RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGK 606 (1749)
Q Consensus 542 ~VtsVafSPDG~~LATGs~DG---tI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGt 606 (1749)
.....+|||||++|+..+.++ .|++||+.+++... +..+ .....+.|+|++..++++....|.
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~ 394 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGR 394 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCC
Confidence 234578999999999877654 69999998887654 3322 234678999955445544444433
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.2e-09 Score=117.24 Aligned_cols=313 Identities=13% Similarity=0.173 Sum_probs=180.8
Q ss_pred ccccccceEEEEccCCCCEEEEEECCCCC-EEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCC
Q 000270 228 TMVQKMQNIKRVRGHRNAVYCAIFDRSGR-YVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND 306 (1749)
Q Consensus 228 ~~~~~~~~i~tL~GH~~~Vt~VaFSPDG~-~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~D 306 (1749)
|.+...+-...+.....++.+++|||||+ +|.+..-+-.|.||.+.+..... +......+..++|+|||++.+.++.-
T Consensus 76 wsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRr 154 (447)
T KOG4497|consen 76 WSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRR 154 (447)
T ss_pred EEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecc
Confidence 33334444556777788999999999995 55566679999999998865543 33335567899999999999888753
Q ss_pred C---eEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCC
Q 000270 307 C---IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMA 383 (1749)
Q Consensus 307 G---tIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~ 383 (1749)
. .+.|........+..+.-.+-..++|.|+|||. . +.+||---.-.+..
T Consensus 155 DCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~---~---------laVwd~~Leykv~a---------------- 206 (447)
T KOG4497|consen 155 DCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGN---W---------LAVWDNVLEYKVYA---------------- 206 (447)
T ss_pred cHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCc---E---------EEEecchhhheeee----------------
Confidence 2 122222223344555666667789999999986 4 44565321110000
Q ss_pred CCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCC-------CCC-cce--eeecCCCCCeEEEEEcC
Q 000270 384 PSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD-------QPN-HEI--DVLSGHENDVNYVQFSG 453 (1749)
Q Consensus 384 ~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~-------~~~-~~i--~~l~gH~~~V~sVafSp 453 (1749)
-..+-.+..++|+|.+++|++|+.|+.+||.+--+-+..... .+. ..+ ..+..-.-...++.|.|
T Consensus 207 -----Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p 281 (447)
T KOG4497|consen 207 -----YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTP 281 (447)
T ss_pred -----eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCC
Confidence 012235889999999999999999999998664322110000 000 000 00000001123444544
Q ss_pred CCcccccc-cc--------------cCC--CCCCCCcccc---cccCCCEEEEEeCC---CcEEEEecCCCCCCcccccc
Q 000270 454 CAVASRFS-LA--------------DSS--KEDSTPKFKN---SWFCHDNIVTCSRD---GSAIIWIPRSRRSHPKAARW 510 (1749)
Q Consensus 454 dg~as~~s-~~--------------~~~--~~~~~~~~~~---s~~~~~~LaSgS~D---GtIrIWDl~s~k~~~~~~~~ 510 (1749)
........ .. ... ....++++.. .|-+...+++.-.| ..+-+||++..+.
T Consensus 282 ~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l------- 354 (447)
T KOG4497|consen 282 TDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKL------- 354 (447)
T ss_pred CccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhh-------
Confidence 33211100 00 000 0001111110 11122233333333 3578899885332
Q ss_pred ccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEE
Q 000270 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDV 590 (1749)
Q Consensus 511 ~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLaf 590 (1749)
..+.....+|....|.|....|+.+....++++|......++.. .+..-.|..+.|
T Consensus 355 -----------------------~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v-P~~GF~i~~l~W 410 (447)
T KOG4497|consen 355 -----------------------HAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQW 410 (447)
T ss_pred -----------------------hhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec-CCCCceeeeEEe
Confidence 12223445799999999999999988888999999865444443 233367999999
Q ss_pred cCCCCcEEEEEeCCCc
Q 000270 591 HPFNPRIAMSAGYDGK 606 (1749)
Q Consensus 591 SPdd~rlLaSgs~DGt 606 (1749)
+- .+..++-.+.|..
T Consensus 411 ~~-~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 411 LQ-PGEFIVLCGKDAF 425 (447)
T ss_pred cC-CCcEEEEEcCCce
Confidence 98 5566666777743
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.8e-08 Score=119.29 Aligned_cols=304 Identities=13% Similarity=0.066 Sum_probs=184.1
Q ss_pred CCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEE
Q 000270 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIA 334 (1749)
Q Consensus 255 G~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIa 334 (1749)
+..|++++.+|.|..+|..+|+.+..+.-.......++. ++..++.++.+|.|..+|..+|+.+...... +.+.+..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCC
Confidence 567888888999999999999988776543322222332 4667788888999999999999988765532 2222211
Q ss_pred eccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCC
Q 000270 335 FSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDT 414 (1749)
Q Consensus 335 FSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DG 414 (1749)
... +. .++.++.+|.|..||..+|+.+.......+... ..... +..+. + ..++++..+|
T Consensus 142 ~v~-~~---~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~-----------~~~~~----sp~~~-~-~~v~~~~~~g 200 (377)
T TIGR03300 142 LVA-NG---LVVVRTNDGRLTALDAATGERLWTYSRVTPALT-----------LRGSA----SPVIA-D-GGVLVGFAGG 200 (377)
T ss_pred EEE-CC---EEEEECCCCeEEEEEcCCCceeeEEccCCCcee-----------ecCCC----CCEEE-C-CEEEEECCCC
Confidence 111 22 577778899999999999987766532111000 00000 11111 2 3677788889
Q ss_pred cEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEE
Q 000270 415 LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAI 494 (1749)
Q Consensus 415 tVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIr 494 (1749)
.|..+|+.++...-... .....+.. .+..+.. ........++.+++++.+|.+.
T Consensus 201 ~v~ald~~tG~~~W~~~----~~~~~g~~-~~~~~~~---------------------~~~~p~~~~~~vy~~~~~g~l~ 254 (377)
T TIGR03300 201 KLVALDLQTGQPLWEQR----VALPKGRT-ELERLVD---------------------VDGDPVVDGGQVYAVSYQGRVA 254 (377)
T ss_pred EEEEEEccCCCEeeeec----cccCCCCC-chhhhhc---------------------cCCccEEECCEEEEEEcCCEEE
Confidence 99999987643210000 00000000 0000000 0000112246788888999999
Q ss_pred EEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 000270 495 IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSL 574 (1749)
Q Consensus 495 IWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgkl 574 (1749)
.||..+++. .|.... .....++ .++..|++++.+|.|+.+|..+|+.
T Consensus 255 a~d~~tG~~-----~W~~~~--------------------------~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~ 301 (377)
T TIGR03300 255 ALDLRSGRV-----LWKRDA--------------------------SSYQGPA--VDDNRLYVTDADGVVVALDRRSGSE 301 (377)
T ss_pred EEECCCCcE-----EEeecc--------------------------CCccCce--EeCCEEEEECCCCeEEEEECCCCcE
Confidence 999987652 222110 0011111 2466788888999999999999998
Q ss_pred EEEecCCC-CCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeee-----cc--CCCEEEEEcCCCeEEEE
Q 000270 575 VHSLTGHT-ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISR-----FR--DGASIILSDDVGQLYIL 644 (1749)
Q Consensus 575 v~tL~gH~-~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~~-----~s--DG~~LAsgd~DG~I~IW 644 (1749)
+....... ..+.+... .+..|++++.+|.|.+||..+|+.+..+..+. .+ -+..|++++.||.|+.|
T Consensus 302 ~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 302 LWKNDELKYRQLTAPAV---VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred EEccccccCCccccCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 87653221 12222222 23466778999999999999999998887532 11 34458888889998876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.1e-08 Score=110.06 Aligned_cols=179 Identities=17% Similarity=0.284 Sum_probs=130.4
Q ss_pred cEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECC-CCceEEEecCCCCceEEEEeccCCCcce
Q 000270 265 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP-DGLPISVLRGHTAAVTAIAFSPRPGSVY 343 (1749)
Q Consensus 265 GtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~-tgk~l~tL~gHs~~VtsIaFSPdg~~~~ 343 (1749)
..|.|||=...+++.++. ...+|.++.+.++ .||+.- .+.|.||... +.+.++.+.....+=--++.+|.....
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~- 149 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS- 149 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCce-
Confidence 479999977778888876 5789999999866 455554 5689999987 446666664333222234445544322
Q ss_pred EEE-eecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCc-EEEEeC
Q 000270 344 QLL-SSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTL-ARVWNA 421 (1749)
Q Consensus 344 ~La-SgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGt-VrIWDl 421 (1749)
+|| -|-.-|.|+|-|+.....-... ...+|...|.|++.+-+|.++|+++..|+ |||||.
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~~p~------------------~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt 211 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPNAPS------------------IINAHDSDIACVALNLQGTLVATASTKGTLIRIFDT 211 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcCCce------------------EEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEc
Confidence 343 4556799999998765542111 12568899999999999999999999997 899999
Q ss_pred CCCCCCCCCCCCcceeeecC--CCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecC
Q 000270 422 CKPNTDDSDQPNHEIDVLSG--HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPR 499 (1749)
Q Consensus 422 ~t~~~~~s~~~~~~i~~l~g--H~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~ 499 (1749)
.++. .+..++. ....|++++|+|+. .+|+++|..|+|.|+.++
T Consensus 212 ~~g~---------~l~E~RRG~d~A~iy~iaFSp~~--------------------------s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 212 EDGT---------LLQELRRGVDRADIYCIAFSPNS--------------------------SWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred CCCc---------EeeeeecCCchheEEEEEeCCCc--------------------------cEEEEEcCCCeEEEEEee
Confidence 7643 3444432 24579999999997 799999999999999887
Q ss_pred CC
Q 000270 500 SR 501 (1749)
Q Consensus 500 s~ 501 (1749)
..
T Consensus 257 ~~ 258 (346)
T KOG2111|consen 257 DT 258 (346)
T ss_pred cC
Confidence 53
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.9e-08 Score=125.46 Aligned_cols=234 Identities=14% Similarity=0.035 Sum_probs=143.5
Q ss_pred EEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCC---CeEEEEECCCCceEEEecCCCCceEEEEeccCCCcc
Q 000270 266 LVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSV 342 (1749)
Q Consensus 266 tVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~D---GtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~ 342 (1749)
.|.++|..... .+.+..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++... +....+.....+|+||++
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~-- 274 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGK-- 274 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCC--
Confidence 67777876543 35556677889999999999998877543 368899998886533 222233445789999987
Q ss_pred eEEEeecCCCc--EEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecC-CC--cEE
Q 000270 343 YQLLSSSDDGT--CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DT--LAR 417 (1749)
Q Consensus 343 ~~LaSgS~DGt--IrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~-DG--tVr 417 (1749)
.++++.+.+|. |.+||+.+++.. .+. .+.......+|+|||++|+..+. ++ .|+
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~~~-~lt--------------------~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy 333 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKALT-RIT--------------------RHRAIDTEPSWHPDGKSLIFTSERGGKPQIY 333 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCeE-ECc--------------------cCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 23345566665 777788766532 111 12233567899999998876554 34 466
Q ss_pred EEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeC-CCcEEE-
Q 000270 418 VWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR-DGSAII- 495 (1749)
Q Consensus 418 IWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~-DGtIrI- 495 (1749)
++++.++. ...+..........+|+|++ +.|+..+. ++...|
T Consensus 334 ~~dl~~g~----------~~~Lt~~g~~~~~~~~SpDG--------------------------~~l~~~~~~~g~~~I~ 377 (448)
T PRK04792 334 RVNLASGK----------VSRLTFEGEQNLGGSITPDG--------------------------RSMIMVNRTNGKFNIA 377 (448)
T ss_pred EEECCCCC----------EEEEecCCCCCcCeeECCCC--------------------------CEEEEEEecCCceEEE
Confidence 66664321 11121122223446788887 55555443 454444
Q ss_pred -EecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCC-C--eEEEEECCC
Q 000270 496 -WIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD-C--RICVWNAAD 571 (1749)
Q Consensus 496 -WDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~D-G--tI~VWDl~t 571 (1749)
+|+.++.. ..+... .......|+|||++|+..+.+ + .|++++. +
T Consensus 378 ~~dl~~g~~------------------------------~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~ 425 (448)
T PRK04792 378 RQDLETGAM------------------------------QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-D 425 (448)
T ss_pred EEECCCCCe------------------------------EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-C
Confidence 55554321 000000 011234799999998876643 3 3778886 6
Q ss_pred CceEEEecCCCCCeEEEEEcC
Q 000270 572 GSLVHSLTGHTESTYVLDVHP 592 (1749)
Q Consensus 572 gklv~tL~gH~~~VtsLafSP 592 (1749)
|.....+..+.+.+...+|+|
T Consensus 426 G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 426 GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCceEECcCCCCCcCCCccCC
Confidence 777777877777788889988
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.1e-08 Score=123.46 Aligned_cols=233 Identities=15% Similarity=0.039 Sum_probs=146.2
Q ss_pred EEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCC---CeEEEEECCCCceEEEecCCCCceEEEEeccCCCcc
Q 000270 266 LVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSV 342 (1749)
Q Consensus 266 tVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~D---GtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~ 342 (1749)
.|.++|...+. .+.+..+...+...+|+|||+.|+..+.+ ..|.+|++.+++... +....+.+...+|+|+++
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~-- 255 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGS-- 255 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCC--
Confidence 57888887544 45555677889999999999999887644 369999998886543 333344566789999987
Q ss_pred eEEE-eecCCC--cEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecC-CC--cE
Q 000270 343 YQLL-SSSDDG--TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DT--LA 416 (1749)
Q Consensus 343 ~~La-SgS~DG--tIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~-DG--tV 416 (1749)
.|+ +...+| .|.+||+.++... .+. .+........|+|||+.|+..+. +| .|
T Consensus 256 -~la~~~~~~g~~~Iy~~d~~~~~~~-~lt--------------------~~~~~~~~~~~spDg~~i~f~s~~~g~~~i 313 (430)
T PRK00178 256 -KLAFVLSKDGNPEIYVMDLASRQLS-RVT--------------------NHPAIDTEPFWGKDGRTLYFTSDRGGKPQI 313 (430)
T ss_pred -EEEEEEccCCCceEEEEECCCCCeE-Ecc--------------------cCCCCcCCeEECCCCCEEEEEECCCCCceE
Confidence 444 555555 5788898876532 121 11223456789999998776553 33 46
Q ss_pred EEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeC-CC--cE
Q 000270 417 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR-DG--SA 493 (1749)
Q Consensus 417 rIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~-DG--tI 493 (1749)
+++++.++. ...+...........|+|++ +.|+..+. ++ .|
T Consensus 314 y~~d~~~g~----------~~~lt~~~~~~~~~~~Spdg--------------------------~~i~~~~~~~~~~~l 357 (430)
T PRK00178 314 YKVNVNGGR----------AERVTFVGNYNARPRLSADG--------------------------KTLVMVHRQDGNFHV 357 (430)
T ss_pred EEEECCCCC----------EEEeecCCCCccceEECCCC--------------------------CEEEEEEccCCceEE
Confidence 677765432 11111111223346788887 56655543 33 46
Q ss_pred EEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCC---CeEEEEECC
Q 000270 494 IIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAA 570 (1749)
Q Consensus 494 rIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~D---GtI~VWDl~ 570 (1749)
.+||+.++... .+. .........|+|||++|+.++.+ ..|+++++.
T Consensus 358 ~~~dl~tg~~~------------------------------~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 358 AAQDLQRGSVR------------------------------ILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred EEEECCCCCEE------------------------------Ecc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 77787653310 000 00111235799999999887654 357788874
Q ss_pred CCceEEEecCCCCCeEEEEEcC
Q 000270 571 DGSLVHSLTGHTESTYVLDVHP 592 (1749)
Q Consensus 571 tgklv~tL~gH~~~VtsLafSP 592 (1749)
|.....+..+.+.+...+|+|
T Consensus 407 -g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 407 -GRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred -CCceEECcCCCCCcCCCccCC
Confidence 555556666666778888887
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-08 Score=131.09 Aligned_cols=197 Identities=19% Similarity=0.247 Sum_probs=154.2
Q ss_pred EEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCC----eEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEE
Q 000270 246 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD----ITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS 321 (1749)
Q Consensus 246 Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~----VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~ 321 (1749)
|....+.-....++.++.+..+.|||...+..+..+.+.... ..-+-++++.-++++|+.-+.|.+|+......-.
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~ 169 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI 169 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc
Confidence 333555566778888888899999999887777665532221 1223356677899999999999999987433333
Q ss_pred EecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEc
Q 000270 322 VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN 401 (1749)
Q Consensus 322 tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafS 401 (1749)
.+.||.+.|..+.|+-++. ++++.++|.++++|++++.+.... ..-+|...|+.++|.
T Consensus 170 ~l~GHeG~iF~i~~s~dg~---~i~s~SdDRsiRlW~i~s~~~~~~-------------------~~fgHsaRvw~~~~~ 227 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDGR---YIASVSDDRSIRLWPIDSREVLGC-------------------TGFGHSARVWACCFL 227 (967)
T ss_pred eecccCCceEEEEEccCCc---EEEEEecCcceeeeecccccccCc-------------------ccccccceeEEEEec
Confidence 5889999999999999997 999999999999999998875541 124689999999999
Q ss_pred CCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCC-CeEEEEEcCCCcccccccccCCCCCCCCcccccccC
Q 000270 402 ANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN-DVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFC 480 (1749)
Q Consensus 402 PDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~-~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~ 480 (1749)
|+ .+++++.|.+.++|+.. ...+..+.+|.+ .+..++..+..
T Consensus 228 ~n--~i~t~gedctcrvW~~~----------~~~l~~y~~h~g~~iw~~~~~~~~------------------------- 270 (967)
T KOG0974|consen 228 PN--RIITVGEDCTCRVWGVN----------GTQLEVYDEHSGKGIWKIAVPIGV------------------------- 270 (967)
T ss_pred cc--eeEEeccceEEEEEecc----------cceehhhhhhhhcceeEEEEcCCc-------------------------
Confidence 98 89999999999999764 334446777754 67888887654
Q ss_pred CCEEEEEeCCCcEEEEecCCCC
Q 000270 481 HDNIVTCSRDGSAIIWIPRSRR 502 (1749)
Q Consensus 481 ~~~LaSgS~DGtIrIWDl~s~k 502 (1749)
..++|++.||.+++|++....
T Consensus 271 -~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 271 -IIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred -eEEEeeccCcchhhhhhhccc
Confidence 588999999999999987644
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.1e-07 Score=109.35 Aligned_cols=281 Identities=12% Similarity=0.014 Sum_probs=167.5
Q ss_pred cEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeC----------CCeEEEEECCCCceEEEecCC-------C
Q 000270 265 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN----------DCIIRVWRLPDGLPISVLRGH-------T 327 (1749)
Q Consensus 265 GtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~----------DGtIrVWDl~tgk~l~tL~gH-------s 327 (1749)
++|.|.|..+++.+.++..-..+- .+ ++||++.|.++.. +..|.|||+.+++.+..+.-. .
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 899999999999999887543333 24 9999998877665 689999999999999887632 2
Q ss_pred CceEEEEeccCCCcceEEEeec-C-CCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCC
Q 000270 328 AAVTAIAFSPRPGSVYQLLSSS-D-DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT 405 (1749)
Q Consensus 328 ~~VtsIaFSPdg~~~~~LaSgS-~-DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~ 405 (1749)
.....++++||++ +|++.. . +..|.+.|+.+++.+..+.++.. ..-...+.+..
T Consensus 105 ~~~~~~~ls~dgk---~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~---------------------~~vy~t~e~~~ 160 (352)
T TIGR02658 105 TYPWMTSLTPDNK---TLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC---------------------YHIFPTANDTF 160 (352)
T ss_pred CccceEEECCCCC---EEEEecCCCCCEEEEEECCCCcEEEEEeCCCC---------------------cEEEEecCCcc
Confidence 2335789999997 555443 3 78999999999998887754211 11111111211
Q ss_pred EEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEE-EEcCCCcccccccccCCCCCCCCcccccccCCCEE
Q 000270 406 VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYV-QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI 484 (1749)
Q Consensus 406 ~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sV-afSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~L 484 (1749)
+ +-+.||......+...... . ......+.+-...+..- .|.+ .++..+
T Consensus 161 ~--~~~~Dg~~~~v~~d~~g~~---~-~~~~~vf~~~~~~v~~rP~~~~-------------------------~dg~~~ 209 (352)
T TIGR02658 161 F--MHCRDGSLAKVGYGTKGNP---K-IKPTEVFHPEDEYLINHPAYSN-------------------------KSGRLV 209 (352)
T ss_pred E--EEeecCceEEEEecCCCce---E-EeeeeeecCCccccccCCceEc-------------------------CCCcEE
Confidence 1 1122333333222110000 0 00000000000000000 1122 122455
Q ss_pred EEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEe-----
Q 000270 485 VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI----- 559 (1749)
Q Consensus 485 aSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs----- 559 (1749)
+.... |+|.+.|+........ ..|... . ..... -.-...++.-++++++|+.++++.
T Consensus 210 ~vs~e-G~V~~id~~~~~~~~~-~~~~~~-~---------~~~~~------~~wrP~g~q~ia~~~dg~~lyV~~~~~~~ 271 (352)
T TIGR02658 210 WPTYT-GKIFQIDLSSGDAKFL-PAIEAF-T---------EAEKA------DGWRPGGWQQVAYHRARDRIYLLADQRAK 271 (352)
T ss_pred EEecC-CeEEEEecCCCcceec-ceeeec-c---------ccccc------cccCCCcceeEEEcCCCCEEEEEecCCcc
Confidence 55544 9999999765331110 011000 0 00000 001234555699999999988853
Q ss_pred -----CCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCC-cEEEEEeCCCcEEEEeCCCCceEEEE
Q 000270 560 -----MDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP-RIAMSAGYDGKTIVWDIWEGIPIRIY 621 (1749)
Q Consensus 560 -----~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~-rlLaSgs~DGtIrVWDl~tGk~l~tl 621 (1749)
..+.|.++|..+++.+..+.. ...+..|+++|++. .++++...++.|.+.|+.+++.++++
T Consensus 272 ~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 272 WTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred ccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 225799999999999998764 23689999999655 44445557899999999999999988
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.8e-10 Score=138.17 Aligned_cols=166 Identities=14% Similarity=0.225 Sum_probs=123.8
Q ss_pred ccccceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCC--
Q 000270 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDC-- 307 (1749)
Q Consensus 230 ~~~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DG-- 307 (1749)
+..+...++|+.|...-+|++|+-+.+.|+.|+..|.|+++++.+|.......+|.++|+.+.-+.||.++++.+.-.
T Consensus 1088 FSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1088 FSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred HhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCc
Confidence 445677889999999999999999999999999999999999999999999999999999999999998777665432
Q ss_pred eEEEEECCC-CceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCC
Q 000270 308 IIRVWRLPD-GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1749)
Q Consensus 308 tIrVWDl~t-gk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~ 386 (1749)
...+|++.+ +....++. .-.++.|+.... .-+.|+.-....+||+.++..+.++..+.
T Consensus 1168 lsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q---~r~~gt~~d~a~~YDvqT~~~l~tylt~~-------------- 1226 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSFD----EDKAVKFSNSLQ---FRALGTEADDALLYDVQTCSPLQTYLTDT-------------- 1226 (1516)
T ss_pred hHHHhccccccCcccccc----ccceeehhhhHH---HHHhcccccceEEEecccCcHHHHhcCcc--------------
Confidence 578999854 44455554 346788987643 33444444568999999998776643211
Q ss_pred CCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCC
Q 000270 387 SAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACK 423 (1749)
Q Consensus 387 s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t 423 (1749)
......-++..|+|+..+++ .||. +||++.
T Consensus 1227 --~~~~y~~n~a~FsP~D~LIl---ndGv--LWDvR~ 1256 (1516)
T KOG1832|consen 1227 --VTSSYSNNLAHFSPCDTLIL---NDGV--LWDVRI 1256 (1516)
T ss_pred --hhhhhhccccccCCCcceEe---eCce--eeeecc
Confidence 01112236778888877666 3443 788754
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.3e-08 Score=123.83 Aligned_cols=309 Identities=15% Similarity=0.136 Sum_probs=191.9
Q ss_pred EEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCC------------cEEEEEeCCCeEEEEE
Q 000270 246 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNN------------ALVASASNDCIIRVWR 313 (1749)
Q Consensus 246 Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg------------~lLASGS~DGtIrVWD 313 (1749)
-.++.|+|.| +||.|+. ..|.|-|..+.+.++++.-|...|+.+.|.|-. -+||++.-.|.|.|||
T Consensus 18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 4567899888 6777765 479999999999999999999999999998731 2577777789999999
Q ss_pred CCCCceEEEecCCCCceEEEEeccCCCcc-eEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000270 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSV-YQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1749)
Q Consensus 314 l~tgk~l~tL~gHs~~VtsIaFSPdg~~~-~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~ 392 (1749)
+..+..+..+..|..++..++|-+..... ..|++-..-.+|.+|+..+|+...... ...
T Consensus 96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~--------------------ys~ 155 (1062)
T KOG1912|consen 96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD--------------------YSH 155 (1062)
T ss_pred ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc--------------------cCC
Confidence 99998888899899999999998754322 366666777889999999998665542 223
Q ss_pred CceEEEEEcC-CCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCC-------eEEEEEcCCCccccccccc
Q 000270 393 HQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEND-------VNYVQFSGCAVASRFSLAD 464 (1749)
Q Consensus 393 ~~Vt~LafSP-DG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~-------V~sVafSpdg~as~~s~~~ 464 (1749)
....|+.+.| |.+.|.+-+..|.|.+.+.-... ....+++.++.-..|... +.....+...
T Consensus 156 ~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~s--ep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~--------- 224 (1062)
T KOG1912|consen 156 EILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLS--EPDVPGKEFQITSDHSDLAHLERETATGNSTTSTP--------- 224 (1062)
T ss_pred cceeeeeeCCCCcceEEEEccCceEEEEeccCCC--CCCCCceeEEEecCccchhhhhhhhhccccccCCC---------
Confidence 4467799988 66777777788888887763221 223344555544444331 0000000000
Q ss_pred CCCCCCCCcccccccCC--CEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCC
Q 000270 465 SSKEDSTPKFKNSWFCH--DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRG 542 (1749)
Q Consensus 465 ~~~~~~~~~~~~s~~~~--~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~ 542 (1749)
........+.+..|.+ +.++-......+.|+|+.-..+. ....-..++
T Consensus 225 -~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l-----------------------------~vvpier~~ 274 (1062)
T KOG1912|consen 225 -ASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCL-----------------------------AVVPIERGG 274 (1062)
T ss_pred -cchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhcee-----------------------------EEEEeccCC
Confidence 0000000000111111 22333334566778887642221 111222334
Q ss_pred eeEEEEcCCC--CEEEEEeCCCeEEEEECCC----------------CceEEEecCC-CCCeEEEEEcCCCCcEEEEEeC
Q 000270 543 VNMIVWSLDN--RFVLAAIMDCRICVWNAAD----------------GSLVHSLTGH-TESTYVLDVHPFNPRIAMSAGY 603 (1749)
Q Consensus 543 VtsVafSPDG--~~LATGs~DGtI~VWDl~t----------------gklv~tL~gH-~~~VtsLafSPdd~rlLaSgs~ 603 (1749)
+.-+.|-|++ ..|++.-.||.+.||-... |..++.+..- .-.+...+..|..+..++.--.
T Consensus 275 akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s 354 (1062)
T KOG1912|consen 275 AKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYS 354 (1062)
T ss_pred cceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhh
Confidence 4556666766 4789999999999997543 2222222211 1123334445644444444446
Q ss_pred CCcEEEEeCCCCce
Q 000270 604 DGKTIVWDIWEGIP 617 (1749)
Q Consensus 604 DGtIrVWDl~tGk~ 617 (1749)
+|.+.+|.+.+|+.
T Consensus 355 ~g~~~~w~l~~~ri 368 (1062)
T KOG1912|consen 355 SGDSTFWQLSNGRI 368 (1062)
T ss_pred cchhHHHhhhcCCc
Confidence 78889999887653
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.1e-08 Score=112.62 Aligned_cols=157 Identities=13% Similarity=0.214 Sum_probs=107.1
Q ss_pred EEEEEcCCCCEEEEecC----------CCcEEEEeCCCCCCCCCCCCCcceeeec-CCCCCeEEEEEcCCCccccccccc
Q 000270 396 FCCAFNANGTVFVTGSS----------DTLARVWNACKPNTDDSDQPNHEIDVLS-GHENDVNYVQFSGCAVASRFSLAD 464 (1749)
Q Consensus 396 t~LafSPDG~~LaSGs~----------DGtVrIWDl~t~~~~~s~~~~~~i~~l~-gH~~~V~sVafSpdg~as~~s~~~ 464 (1749)
..+.|++.|..|++-.. -|...||.++... ..+..+. ...++|.+++|+|++
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~--------~~~~~i~l~~~~~I~~~~WsP~g--------- 71 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN--------IPVESIELKKEGPIHDVAWSPNG--------- 71 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC--------CccceeeccCCCceEEEEECcCC---------
Confidence 35789999987765433 1345556553211 1122222 234579999999987
Q ss_pred CCCCCCCCcccccccCCCEEE--EEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCC
Q 000270 465 SSKEDSTPKFKNSWFCHDNIV--TCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRG 542 (1749)
Q Consensus 465 ~~~~~~~~~~~~s~~~~~~La--SgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~ 542 (1749)
+.|+ +|..++.|.+||++. + .+..+ +...
T Consensus 72 -----------------~~favi~g~~~~~v~lyd~~~-~-----------------------------~i~~~--~~~~ 102 (194)
T PF08662_consen 72 -----------------NEFAVIYGSMPAKVTLYDVKG-K-----------------------------KIFSF--GTQP 102 (194)
T ss_pred -----------------CEEEEEEccCCcccEEEcCcc-c-----------------------------EeEee--cCCC
Confidence 4543 345678999999862 1 11111 2346
Q ss_pred eeEEEEcCCCCEEEEEeCC---CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeC------CCcEEEEeCC
Q 000270 543 VNMIVWSLDNRFVLAAIMD---CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGY------DGKTIVWDIW 613 (1749)
Q Consensus 543 VtsVafSPDG~~LATGs~D---GtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~------DGtIrVWDl~ 613 (1749)
++.|.|||+|++|++|+.+ |.|.+||+.+.+.+..+.. ..++.++|+| ++++|+++.. |..++||+.
T Consensus 103 ~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~- 178 (194)
T PF08662_consen 103 RNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSF- 178 (194)
T ss_pred ceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcC-CCCEEEEEEeccceeccccEEEEEe-
Confidence 7889999999999998743 6799999998888877653 3478999999 6677776653 788899998
Q ss_pred CCceEEEEe
Q 000270 614 EGIPIRIYE 622 (1749)
Q Consensus 614 tGk~l~tl~ 622 (1749)
.|+.+....
T Consensus 179 ~G~~l~~~~ 187 (194)
T PF08662_consen 179 QGRLLYKKP 187 (194)
T ss_pred cCeEeEecc
Confidence 577665543
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-07 Score=117.63 Aligned_cols=411 Identities=11% Similarity=0.053 Sum_probs=225.1
Q ss_pred cccccceEEEEccCCCCEEEEEECCC------C------CEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcC-
Q 000270 229 MVQKMQNIKRVRGHRNAVYCAIFDRS------G------RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSS- 295 (1749)
Q Consensus 229 ~~~~~~~i~tL~GH~~~Vt~VaFSPD------G------~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSP- 295 (1749)
...+.+.++.+.-|...|+.|.|.|- + -+||++...|.|.|||...+..+..+..|..+|.+++|-+
T Consensus 41 Ds~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~ 120 (1062)
T KOG1912|consen 41 DSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPA 120 (1062)
T ss_pred ehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeec
Confidence 33457889999999999999999872 1 2577888899999999999998889999999999999987
Q ss_pred --CC-cEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCc----cccee
Q 000270 296 --NN-ALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ----FSPRI 368 (1749)
Q Consensus 296 --Dg-~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~----~l~~l 368 (1749)
+. .+|++-....+|.+|+..+|+.+...........|+.+.|-... .+..-+..|.|.+-+.-... ....+
T Consensus 121 rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r--h~~~l~s~g~vl~~~~l~~sep~~pgk~~ 198 (1062)
T KOG1912|consen 121 RDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR--HFCVLGSKGFVLSCKDLGLSEPDVPGKEF 198 (1062)
T ss_pred cCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc--eEEEEccCceEEEEeccCCCCCCCCceeE
Confidence 33 46677777789999999999988887766677788999887643 45555556766666543211 11222
Q ss_pred ecCCCCCccc--CCC---CCCCCCCCCCCC---ceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeec
Q 000270 369 YIPRPSDAVA--GRN---MAPSSSAGPQSH---QIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS 440 (1749)
Q Consensus 369 ~~~~~~~~~~--g~~---~~~~~s~~~h~~---~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~ 440 (1749)
.+..+..... ... ............ ....++|+|.-+-++....-..+.|+|+.- ..++....
T Consensus 199 qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~---------~~~l~vvp 269 (1062)
T KOG1912|consen 199 QITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEY---------ECCLAVVP 269 (1062)
T ss_pred EEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchh---------hceeEEEE
Confidence 2221110000 000 000000000000 122467788655444445567788888843 22233333
Q ss_pred CCCCCeEEEEEcCCCccccc---------ccccCCCC--------------------------CCCCcccccccC-CCEE
Q 000270 441 GHENDVNYVQFSGCAVASRF---------SLADSSKE--------------------------DSTPKFKNSWFC-HDNI 484 (1749)
Q Consensus 441 gH~~~V~sVafSpdg~as~~---------s~~~~~~~--------------------------~~~~~~~~s~~~-~~~L 484 (1749)
-..+.+.-+.+-|+...... .+...... ...+........ +..+
T Consensus 270 ier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~ 349 (1062)
T KOG1912|consen 270 IERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSAL 349 (1062)
T ss_pred eccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhh
Confidence 33333334444443310000 00000000 000000000000 1112
Q ss_pred EEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCC--CcccccCCCCCeeEEEEcC-----------C
Q 000270 485 VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGG--PRQRILPTPRGVNMIVWSL-----------D 551 (1749)
Q Consensus 485 aSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~--~i~~l~~h~~~VtsVafSP-----------D 551 (1749)
+.--.+|.+.+|.+.+++.+.........+.+.+............. .+..-.+|..+.++....| .
T Consensus 350 avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~ 429 (1062)
T KOG1912|consen 350 AVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPG 429 (1062)
T ss_pred hhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCC
Confidence 22223455555555543322111000000000000000000000000 0001123444444443332 2
Q ss_pred C-------CEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEe----------CCCcEEEEeCCC
Q 000270 552 N-------RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAG----------YDGKTIVWDIWE 614 (1749)
Q Consensus 552 G-------~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs----------~DGtIrVWDl~t 614 (1749)
| .++|.|...|+|.|+|+.++.....+..|+..|.++.|-. . .-|+|.+ .-+.+.|=|+.+
T Consensus 430 ~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g-~-sslvSfsys~~n~~sg~vrN~l~vtdLrt 507 (1062)
T KOG1912|consen 430 GNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLG-N-SSLVSFSYSHVNSASGGVRNDLVVTDLRT 507 (1062)
T ss_pred CCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecc-c-eeEEEeeeccccccccceeeeEEEEEccc
Confidence 2 3578899999999999999999999999999999999965 3 3344433 234567788888
Q ss_pred CceEEEE--ee---------eeccCCCEEEEEcCCCeEEEEECCCCccc
Q 000270 615 GIPIRIY--EI---------SRFRDGASIILSDDVGQLYILNTGQGESQ 652 (1749)
Q Consensus 615 Gk~l~tl--~~---------~~~sDG~~LAsgd~DG~I~IWdl~tGe~~ 652 (1749)
|.....- .. ....-|++|+..-.+--+-|||+.+...+
T Consensus 508 Glsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~l 556 (1062)
T KOG1912|consen 508 GLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRML 556 (1062)
T ss_pred ccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHH
Confidence 8543321 11 12238999999999999999998665544
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.1e-08 Score=122.54 Aligned_cols=164 Identities=15% Similarity=0.097 Sum_probs=115.7
Q ss_pred ceEEEEccCCCCEEEEEECCCCCEEEEEeCC---cEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEE-EeCCC--
Q 000270 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDD---RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVAS-ASNDC-- 307 (1749)
Q Consensus 234 ~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~D---GtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLAS-GS~DG-- 307 (1749)
...+.|..+...+.+.+|+|||++||.++.+ ..|++||+.++.... +..+.+.+.+++|+|||+.|+. .+.++
T Consensus 180 ~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 258 (417)
T TIGR02800 180 ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNP 258 (417)
T ss_pred CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCc
Confidence 3456677788889999999999999987653 489999999886543 3345667778999999987764 44443
Q ss_pred eEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeec-CCC--cEEEEEcCCCcccceeecCCCCCcccCCCCCC
Q 000270 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS-DDG--TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 384 (1749)
Q Consensus 308 tIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS-~DG--tIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~ 384 (1749)
.|.+|++.++... .+..+........|+|+++ .|+.++ ..+ .|.+|++.++... .+.
T Consensus 259 ~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~---~l~~~s~~~g~~~iy~~d~~~~~~~-~l~--------------- 318 (417)
T TIGR02800 259 DIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGK---SIAFTSDRGGSPQIYMMDADGGEVR-RLT--------------- 318 (417)
T ss_pred cEEEEECCCCCEE-ECCCCCCCCCCEEECCCCC---EEEEEECCCCCceEEEEECCCCCEE-Eee---------------
Confidence 5899999877543 4444555566789999987 555443 333 4777777665422 221
Q ss_pred CCCCCCCCCceEEEEEcCCCCEEEEecCCC---cEEEEeCCC
Q 000270 385 SSSAGPQSHQIFCCAFNANGTVFVTGSSDT---LARVWNACK 423 (1749)
Q Consensus 385 ~~s~~~h~~~Vt~LafSPDG~~LaSGs~DG---tVrIWDl~t 423 (1749)
.+...+..++|+|+|.+|+.++.++ .|.+||+.+
T Consensus 319 -----~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 319 -----FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred -----cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence 1223456789999999999887765 788888864
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.7e-06 Score=105.93 Aligned_cols=304 Identities=13% Similarity=0.144 Sum_probs=177.2
Q ss_pred EEEEeCC----cEEEEEEC--CCCeEE--EEEccCCCCeEEEEEcCCCcEEEEEeC----CCeEEEEECCCC--c--eEE
Q 000270 258 VITGSDD----RLVKIWSM--ETAYCL--ASCRGHEGDITDLAVSSNNALVASASN----DCIIRVWRLPDG--L--PIS 321 (1749)
Q Consensus 258 LATGS~D----GtVrIWDl--~Tg~~l--~tL~gHs~~VtsLafSPDg~lLASGS~----DGtIrVWDl~tg--k--~l~ 321 (1749)
++.|+.. +.|.+|.+ .++++. ..+. -......|+++|++++|.++.. .|.|..|.+... . .+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4455554 68888888 555443 2222 3455677999999999988876 578999988653 2 333
Q ss_pred EecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCC-CcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEE
Q 000270 322 VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY-SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 400 (1749)
Q Consensus 322 tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~t-g~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~Laf 400 (1749)
...........++++|++. +++++...+|.|.++++.. +........... .+..... .........++.|
T Consensus 81 ~~~~~g~~p~~i~~~~~g~--~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~----~g~g~~~---~rq~~~h~H~v~~ 151 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGR--FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRH----EGSGPNP---DRQEGPHPHQVVF 151 (345)
T ss_dssp EEEESSSCEEEEEECTTSS--EEEEEETTTTEEEEEEECTTSEEEEEEEEEES----EEEESST---TTTSSTCEEEEEE
T ss_pred eeccCCCCcEEEEEecCCC--EEEEEEccCCeEEEEEccCCcccceeeeeccc----CCCCCcc---cccccccceeEEE
Confidence 3333445567899999987 2344445699999999987 333322111000 0000000 1112334778999
Q ss_pred cCCCCEEEEecC-CCcEEEEeCCCCCCCCCCCCCcceeee-cCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccc
Q 000270 401 NANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDVL-SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1749)
Q Consensus 401 SPDG~~LaSGs~-DGtVrIWDl~t~~~~~s~~~~~~i~~l-~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~ 478 (1749)
+|+|++|++... ...|++|++..... .......+ .........++|+|++
T Consensus 152 ~pdg~~v~v~dlG~D~v~~~~~~~~~~-----~l~~~~~~~~~~G~GPRh~~f~pdg----------------------- 203 (345)
T PF10282_consen 152 SPDGRFVYVPDLGADRVYVYDIDDDTG-----KLTPVDSIKVPPGSGPRHLAFSPDG----------------------- 203 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEE-TTS------TEEEEEEEECSTTSSEEEEEE-TTS-----------------------
T ss_pred CCCCCEEEEEecCCCEEEEEEEeCCCc-----eEEEeeccccccCCCCcEEEEcCCc-----------------------
Confidence 999998877543 45799999854220 01111222 2345567899999987
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEE
Q 000270 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA 558 (1749)
Q Consensus 479 ~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATG 558 (1749)
...+++.-.+++|.++++..... .+.....+...+ .-.........|+++|||++|+++
T Consensus 204 --~~~Yv~~e~s~~v~v~~~~~~~g-----~~~~~~~~~~~~--------------~~~~~~~~~~~i~ispdg~~lyvs 262 (345)
T PF10282_consen 204 --KYAYVVNELSNTVSVFDYDPSDG-----SLTEIQTISTLP--------------EGFTGENAPAEIAISPDGRFLYVS 262 (345)
T ss_dssp --SEEEEEETTTTEEEEEEEETTTT-----EEEEEEEEESCE--------------TTSCSSSSEEEEEE-TTSSEEEEE
T ss_pred --CEEEEecCCCCcEEEEeecccCC-----ceeEEEEeeecc--------------ccccccCCceeEEEecCCCEEEEE
Confidence 12446666788899998873211 011000000000 000011257889999999998887
Q ss_pred e-CCCeEEEEEC--CCCceE--EEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC--CCCceEEE
Q 000270 559 I-MDCRICVWNA--ADGSLV--HSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI--WEGIPIRI 620 (1749)
Q Consensus 559 s-~DGtI~VWDl--~tgklv--~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl--~tGk~l~t 620 (1749)
. ..+.|.+|++ .+|.+. ..+.........++++|++..++++...++.|.+|++ .+|.+...
T Consensus 263 nr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 263 NRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp ECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred eccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence 6 5678999998 334433 3343334457899999955555555557889999976 56665443
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.3e-07 Score=112.87 Aligned_cols=285 Identities=16% Similarity=0.184 Sum_probs=181.4
Q ss_pred CEEEEEECCCCCEEEEE-----eCC-----cEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEEC
Q 000270 245 AVYCAIFDRSGRYVITG-----SDD-----RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314 (1749)
Q Consensus 245 ~Vt~VaFSPDG~~LATG-----S~D-----GtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl 314 (1749)
.++++.|+|-|.+|.|= ..+ -.+++|+++++.....+..-...-+++.|+.|..+.|-- ..+.|.+|++
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~ 153 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDL 153 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhh-hcceEEEEec
Confidence 78999999999999863 112 357799999966655554322222689999887654432 3457999998
Q ss_pred CCCceEEEecCCCCceEEEEeccCCCcceEEEe-----ecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCC
Q 000270 315 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLS-----SSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389 (1749)
Q Consensus 315 ~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaS-----gS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~ 389 (1749)
.+.+.+.. .-|...|+.+.++|.+.- ..+|+ .|.-+.|+||.+........+. ...+
T Consensus 154 ~~f~~~~~-kl~~~~i~~f~lSpgp~~-~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a---------~ksF------- 215 (566)
T KOG2315|consen 154 GSFKTIQH-KLSVSGITMLSLSPGPEP-PFVAVYVPEKKGAPASVRIYKYPEEGQHQPVA---------NKSF------- 215 (566)
T ss_pred CCccceee-eeeccceeeEEecCCCCC-ceEEEEccCCCCCCcEEEEeccccccccchhh---------hccc-------
Confidence 76433322 236778999999997542 24443 4556789999876322211110 0000
Q ss_pred CCCCceEEEEEcCCCC-EEEE--ecCC---------CcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcc
Q 000270 390 PQSHQIFCCAFNANGT-VFVT--GSSD---------TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVA 457 (1749)
Q Consensus 390 ~h~~~Vt~LafSPDG~-~LaS--Gs~D---------GtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~a 457 (1749)
....-..+.|++-|. +|+. ...| .+++++++. +.....-....++|.++.|++.+.-
T Consensus 216 -Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~----------g~s~~V~L~k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 216 -FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ----------GESVSVPLLKEGPVHDVTWSPSGRE 284 (566)
T ss_pred -cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec----------CceEEEecCCCCCceEEEECCCCCE
Confidence 011122456776665 2222 2222 356666663 1122222334789999999998710
Q ss_pred cccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCccccc
Q 000270 458 SRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL 537 (1749)
Q Consensus 458 s~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~ 537 (1749)
--++.|-.--++.|+|++. .++ +.
T Consensus 285 ------------------------F~VvyGfMPAkvtifnlr~------------------------------~~v--~d 308 (566)
T KOG2315|consen 285 ------------------------FAVVYGFMPAKVTIFNLRG------------------------------KPV--FD 308 (566)
T ss_pred ------------------------EEEEEecccceEEEEcCCC------------------------------CEe--Ee
Confidence 1244566677889998873 111 12
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCC---CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeC------CCcEE
Q 000270 538 PTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGY------DGKTI 608 (1749)
Q Consensus 538 ~h~~~VtsVafSPDG~~LATGs~D---GtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~------DGtIr 608 (1749)
-..++-+++-|+|.|++|+.|+.+ |.|-|||+.+.+++..+.... -+-++|+| |+.+++|+.. |..++
T Consensus 309 f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~P-dGe~flTATTaPRlrvdNg~K 385 (566)
T KOG2315|consen 309 FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSP-DGEYFLTATTAPRLRVDNGIK 385 (566)
T ss_pred CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcC-CCcEEEEEeccccEEecCCeE
Confidence 234566889999999999988854 689999999999988887654 46789999 6666666653 78899
Q ss_pred EEeCCCCceEE
Q 000270 609 VWDIWEGIPIR 619 (1749)
Q Consensus 609 VWDl~tGk~l~ 619 (1749)
||+. +|..+.
T Consensus 386 iwhy-tG~~l~ 395 (566)
T KOG2315|consen 386 IWHY-TGSLLH 395 (566)
T ss_pred EEEe-cCceee
Confidence 9998 555543
|
|
| >cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.9e-10 Score=110.78 Aligned_cols=44 Identities=27% Similarity=0.348 Sum_probs=41.1
Q ss_pred CCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCCC
Q 000270 1676 FPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNT 1719 (1749)
Q Consensus 1676 i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~~s 1719 (1749)
+=+||||+||++||+|+||.++++|++||++||+||++||.++.
T Consensus 61 ~~y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~dr 104 (119)
T cd05491 61 KFYNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRER 104 (119)
T ss_pred eEeccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 33699999999999999999999999999999999999999855
|
TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.7e-08 Score=121.68 Aligned_cols=180 Identities=14% Similarity=0.126 Sum_probs=131.6
Q ss_pred CCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCC
Q 000270 403 NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHD 482 (1749)
Q Consensus 403 DG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~ 482 (1749)
+-..+|-|...|.|.+|++..+. ......-..|.+.|+++.++... .
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~-------it~~~st~~h~~~v~~~~~~~~~--------------------------~ 115 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGE-------ITAKLSTDKHYGNVNEILDAQRL--------------------------G 115 (541)
T ss_pred CceEEEeecCCccEEEEEecCCe-------EEEEEecCCCCCcceeeeccccc--------------------------C
Confidence 44578889999999999996533 11222235799999999988765 6
Q ss_pred EEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCC
Q 000270 483 NIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC 562 (1749)
Q Consensus 483 ~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DG 562 (1749)
.|.+++.|+.+..|+...... +.........+.+++.+|||..+++|+ +
T Consensus 116 ciyS~~ad~~v~~~~~~~~~~-----------------------------~~~~~~~~~~~~sl~is~D~~~l~~as--~ 164 (541)
T KOG4547|consen 116 CIYSVGADLKVVYILEKEKVI-----------------------------IRIWKEQKPLVSSLCISPDGKILLTAS--R 164 (541)
T ss_pred ceEecCCceeEEEEeccccee-----------------------------eeeeccCCCccceEEEcCCCCEEEecc--c
Confidence 899999999999999886431 222334455688999999999999997 7
Q ss_pred eEEEEECCCCceEEEecCCCCCeEEEEEcCC-----CCcEEEEEeCCCcEEEEeCCC----CceEEEEeeeecc------
Q 000270 563 RICVWNAADGSLVHSLTGHTESTYVLDVHPF-----NPRIAMSAGYDGKTIVWDIWE----GIPIRIYEISRFR------ 627 (1749)
Q Consensus 563 tI~VWDl~tgklv~tL~gH~~~VtsLafSPd-----d~rlLaSgs~DGtIrVWDl~t----Gk~l~tl~~~~~s------ 627 (1749)
.|++||+.+++.+.+|.||.++|.++.|... +..+|.++..+..|.+|-+.. +...+.+.....+
T Consensus 165 ~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~~dipv~~ds~ 244 (541)
T KOG4547|consen 165 QIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTVPDIPVTSDSG 244 (541)
T ss_pred eEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchhheeeccCCCCeEeccc
Confidence 8999999999999999999999999999774 356777777788899997654 2333333322211
Q ss_pred ---CCC---EEEEEcCCCeEEEEEC
Q 000270 628 ---DGA---SIILSDDVGQLYILNT 646 (1749)
Q Consensus 628 ---DG~---~LAsgd~DG~I~IWdl 646 (1749)
|+. .||++-..|.+.++..
T Consensus 245 ~~ed~~~~l~lAst~~~g~v~~~~~ 269 (541)
T KOG4547|consen 245 LLEDGTIPLVLASTLIPGIVHLKLS 269 (541)
T ss_pred cccccccceEEeeeccCceeeeccc
Confidence 333 4555566666666643
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-07 Score=119.06 Aligned_cols=165 Identities=15% Similarity=0.066 Sum_probs=112.4
Q ss_pred ceEEEEccCCCCEEEEEECCCCCEEEEEeCC---cEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEE-EeCCC--
Q 000270 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDD---RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVAS-ASNDC-- 307 (1749)
Q Consensus 234 ~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~D---GtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLAS-GS~DG-- 307 (1749)
...+.+..|...+...+|+|||+.||..+.+ ..|.+|++.++.... +....+.+...+|+|||+.|+. .+.+|
T Consensus 189 ~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~ 267 (430)
T PRK00178 189 ARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNP 267 (430)
T ss_pred CCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCc
Confidence 4456677788889999999999999876643 479999999886543 3333445667999999998874 44444
Q ss_pred eEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEE-eecCCC--cEEEEEcCCCcccceeecCCCCCcccCCCCCC
Q 000270 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLL-SSSDDG--TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 384 (1749)
Q Consensus 308 tIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~La-SgS~DG--tIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~ 384 (1749)
.|.+||+.++... .+..+........|+||++ .|+ +...+| .|.++++.+++.. .+..
T Consensus 268 ~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~---~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~-------------- 328 (430)
T PRK00178 268 EIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGR---TLYFTSDRGGKPQIYKVNVNGGRAE-RVTF-------------- 328 (430)
T ss_pred eEEEEECCCCCeE-EcccCCCCcCCeEECCCCC---EEEEEECCCCCceEEEEECCCCCEE-Eeec--------------
Confidence 6888899887654 4555666677789999987 444 433344 4667777766532 2211
Q ss_pred CCCCCCCCCceEEEEEcCCCCEEEEecCC-C--cEEEEeCCCC
Q 000270 385 SSSAGPQSHQIFCCAFNANGTVFVTGSSD-T--LARVWNACKP 424 (1749)
Q Consensus 385 ~~s~~~h~~~Vt~LafSPDG~~LaSGs~D-G--tVrIWDl~t~ 424 (1749)
........+|+|+|++|+..+.+ + .|.+||+.++
T Consensus 329 ------~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg 365 (430)
T PRK00178 329 ------VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG 365 (430)
T ss_pred ------CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCC
Confidence 01112356899999998876643 3 4788888653
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.3e-07 Score=115.15 Aligned_cols=242 Identities=12% Similarity=0.061 Sum_probs=144.3
Q ss_pred cEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEE---EEeCC--CeEEEEECCCCceEEEecCCCCceEEEEeccCC
Q 000270 265 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVA---SASND--CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRP 339 (1749)
Q Consensus 265 GtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLA---SGS~D--GtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg 339 (1749)
+.|.+.|...+. .+.+......+.+-+|||||+.++ +...+ ..|.+.++.+|+..... ...+.....+|+|||
T Consensus 165 ~~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECCCC
Confidence 467777876544 444555566778889999997522 33333 35788898877644332 244556678999999
Q ss_pred CcceEEEeec-CCC----cEEEEEcCCCcc--cceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEec-
Q 000270 340 GSVYQLLSSS-DDG----TCRIWDARYSQF--SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS- 411 (1749)
Q Consensus 340 ~~~~~LaSgS-~DG----tIrIWDl~tg~~--l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs- 411 (1749)
+ .|+..+ .+| .+.+|++..+.. ...+. ..........+|+|||+.|+..+
T Consensus 243 ~---~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt-------------------~~~~~~~~~p~wSPDG~~Laf~s~ 300 (428)
T PRK01029 243 K---LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL-------------------NEAFGTQGNPSFSPDGTRLVFVSN 300 (428)
T ss_pred C---EEEEEECCCCCcceeEEEeecccCCCCcceEee-------------------cCCCCCcCCeEECCCCCEEEEEEC
Confidence 7 444333 223 344466654311 11111 01112245679999999887665
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCC-
Q 000270 412 SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD- 490 (1749)
Q Consensus 412 ~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~D- 490 (1749)
.+|...||.+.... .......+..+...+....|+|++ +.|+..+.+
T Consensus 301 ~~g~~~ly~~~~~~------~g~~~~~lt~~~~~~~~p~wSPDG--------------------------~~Laf~~~~~ 348 (428)
T PRK01029 301 KDGRPRIYIMQIDP------EGQSPRLLTKKYRNSSCPAWSPDG--------------------------KKIAFCSVIK 348 (428)
T ss_pred CCCCceEEEEECcc------cccceEEeccCCCCccceeECCCC--------------------------CEEEEEEcCC
Confidence 46655565442100 011223344455567788999998 566655433
Q ss_pred --CcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeC---CCeEE
Q 000270 491 --GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM---DCRIC 565 (1749)
Q Consensus 491 --GtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~---DGtI~ 565 (1749)
..|.+||+.+++. ..+......+..+.|+|||++|+.... ...|+
T Consensus 349 g~~~I~v~dl~~g~~------------------------------~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 349 GVRQICVYDLATGRD------------------------------YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELY 398 (428)
T ss_pred CCcEEEEEECCCCCe------------------------------EEccCCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 3688888876431 111111224566899999998886543 35799
Q ss_pred EEECCCCceEEEecCCCCCeEEEEEcCC
Q 000270 566 VWNAADGSLVHSLTGHTESTYVLDVHPF 593 (1749)
Q Consensus 566 VWDl~tgklv~tL~gH~~~VtsLafSPd 593 (1749)
+||+.+++...... ..+.+...+|+|.
T Consensus 399 ~vdl~~g~~~~Lt~-~~g~~~~p~Ws~~ 425 (428)
T PRK01029 399 LISLITKKTRKIVI-GSGEKRFPSWGAF 425 (428)
T ss_pred EEECCCCCEEEeec-CCCcccCceecCC
Confidence 99998877654443 4455778888883
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.1e-07 Score=114.34 Aligned_cols=233 Identities=14% Similarity=0.075 Sum_probs=136.3
Q ss_pred CeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCC--cEEEEEcCCCcccceeecCCCCCcccCCCCCC
Q 000270 307 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG--TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 384 (1749)
Q Consensus 307 GtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DG--tIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~ 384 (1749)
..|.+.|...+.. ..+......+..-+|+|||+...++++...+| .|.+.++.++.......
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~--------------- 228 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA--------------- 228 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec---------------
Confidence 3577777655443 34444556677889999987432333444444 57777887765332211
Q ss_pred CCCCCCCCCceEEEEEcCCCCEEEEecC-CC----cEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccc
Q 000270 385 SSSAGPQSHQIFCCAFNANGTVFVTGSS-DT----LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 459 (1749)
Q Consensus 385 ~~s~~~h~~~Vt~LafSPDG~~LaSGs~-DG----tVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~ 459 (1749)
..+.....+|||||+.||..+. +| .+.+|++..+.. .........+.......+|+|++
T Consensus 229 ------~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~------g~~~~lt~~~~~~~~~p~wSPDG---- 292 (428)
T PRK01029 229 ------LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI------GKPRRLLNEAFGTQGNPSFSPDG---- 292 (428)
T ss_pred ------CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC------CcceEeecCCCCCcCCeEECCCC----
Confidence 1223446799999998886543 22 344466643210 11122222233344567899988
Q ss_pred cccccCCCCCCCCcccccccCCCEEEEEe-CCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccC
Q 000270 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCS-RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 538 (1749)
Q Consensus 460 ~s~~~~~~~~~~~~~~~s~~~~~~LaSgS-~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~ 538 (1749)
+.|+..+ .+|...||.+.... .+.....+..
T Consensus 293 ----------------------~~Laf~s~~~g~~~ly~~~~~~--------------------------~g~~~~~lt~ 324 (428)
T PRK01029 293 ----------------------TRLVFVSNKDGRPRIYIMQIDP--------------------------EGQSPRLLTK 324 (428)
T ss_pred ----------------------CEEEEEECCCCCceEEEEECcc--------------------------cccceEEecc
Confidence 5555544 56766666543100 0011122222
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCC---CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeC--CCcEEEEeCC
Q 000270 539 TPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGY--DGKTIVWDIW 613 (1749)
Q Consensus 539 h~~~VtsVafSPDG~~LATGs~D---GtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~--DGtIrVWDl~ 613 (1749)
....+...+|||||++|+..+.+ ..|++||+.+++... +......+....|+|++..+++++.. ...|.+||+.
T Consensus 325 ~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 325 KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 33456788999999999877643 469999999887654 33334456789999955555555543 3567888887
Q ss_pred CCceEEE
Q 000270 614 EGIPIRI 620 (1749)
Q Consensus 614 tGk~l~t 620 (1749)
+++....
T Consensus 404 ~g~~~~L 410 (428)
T PRK01029 404 TKKTRKI 410 (428)
T ss_pred CCCEEEe
Confidence 7765443
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.8e-07 Score=109.81 Aligned_cols=300 Identities=16% Similarity=0.189 Sum_probs=199.1
Q ss_pred CCEEEEEECCCCCEEEEEeCCc---------------EEEEEECCCCeEEEEEccCCCC--eE-EEEEcCCCcEEEEEeC
Q 000270 244 NAVYCAIFDRSGRYVITGSDDR---------------LVKIWSMETAYCLASCRGHEGD--IT-DLAVSSNNALVASASN 305 (1749)
Q Consensus 244 ~~Vt~VaFSPDG~~LATGS~DG---------------tVrIWDl~Tg~~l~tL~gHs~~--Vt-sLafSPDg~lLASGS~ 305 (1749)
..|.-+.|||.++||.|=+..+ .+.|||+.+|..+..+.+...+ .+ -+.|+-+.+++|-..
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv- 150 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV- 150 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-
Confidence 4689999999999999876543 4999999999999999876666 55 678898888877653
Q ss_pred CCeEEEEECCCCc----eEEEecCCCCceEEEEeccCCCcceEEEe-----ecCCCcEEEEEcCCCcccceeecCCCCCc
Q 000270 306 DCIIRVWRLPDGL----PISVLRGHTAAVTAIAFSPRPGSVYQLLS-----SSDDGTCRIWDARYSQFSPRIYIPRPSDA 376 (1749)
Q Consensus 306 DGtIrVWDl~tgk----~l~tL~gHs~~VtsIaFSPdg~~~~~LaS-----gS~DGtIrIWDl~tg~~l~~l~~~~~~~~ 376 (1749)
...+.|+++ ++. +.+.++ ...|....|+|.+++. .||. .+..+.+++|.+..+..+.+..+-
T Consensus 151 ~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~-~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf----- 221 (561)
T COG5354 151 GSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHD-ELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF----- 221 (561)
T ss_pred cCeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCc-eEEEEccccCCCCcEEEEEEccCCCeeeeeeeE-----
Confidence 347999997 432 222222 3467888999986533 3332 567788999988765544433221
Q ss_pred ccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEec-----------CCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCC
Q 000270 377 VAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS-----------SDTLARVWNACKPNTDDSDQPNHEIDVLSGHEND 445 (1749)
Q Consensus 377 ~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs-----------~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~ 445 (1749)
...-..+.|.+.|.+|++-- ....++|+++.. ..+.......++
T Consensus 222 ---------------k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e----------~~i~V~~~~~~p 276 (561)
T COG5354 222 ---------------KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE----------RSIPVEKDLKDP 276 (561)
T ss_pred ---------------eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc----------cccceecccccc
Confidence 01112466777777655421 135677888742 223333366889
Q ss_pred eEEEEEcCCCcccccccccCCCCCCCCcccccccCCCE--EEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCC
Q 000270 446 VNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPM 523 (1749)
Q Consensus 446 V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~--LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~ 523 (1749)
|...+|.|.+ +. +++|-.+-.+.++|++..-
T Consensus 277 Vhdf~W~p~S--------------------------~~F~vi~g~~pa~~s~~~lr~Nl--------------------- 309 (561)
T COG5354 277 VHDFTWEPLS--------------------------SRFAVISGYMPASVSVFDLRGNL--------------------- 309 (561)
T ss_pred ceeeeecccC--------------------------CceeEEecccccceeecccccce---------------------
Confidence 9999999976 33 4445677888888877421
Q ss_pred CCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCC---CeEEEEECCCCceEE-EecCCCCCeEEEEEcCCCCcEEE
Q 000270 524 PPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAADGSLVH-SLTGHTESTYVLDVHPFNPRIAM 599 (1749)
Q Consensus 524 ~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~D---GtI~VWDl~tgklv~-tL~gH~~~VtsLafSPdd~rlLa 599 (1749)
++......-+.+.|||.++++++++.| |.|-+||......+. .+.+.. ..-+.|+| ++.++.
T Consensus 310 -----------~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wsp-d~qF~~ 375 (561)
T COG5354 310 -----------RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSP-DGQFYD 375 (561)
T ss_pred -----------EEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccC-CceEEE
Confidence 112233344668899999999998865 579999987654443 666544 34568999 666665
Q ss_pred EEe------CCCcEEEEeCCCCceEEEEeeeeccCCCEEEEEcCCC
Q 000270 600 SAG------YDGKTIVWDIWEGIPIRIYEISRFRDGASIILSDDVG 639 (1749)
Q Consensus 600 Sgs------~DGtIrVWDl~tGk~l~tl~~~~~sDG~~LAsgd~DG 639 (1749)
++. .|..|.|||+........+...|-+.|++..+.+..+
T Consensus 376 ~~~ts~k~~~Dn~i~l~~v~g~~~fel~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 376 TDTTSEKLRVDNSIKLWDVYGAKVFELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ecCCCcccccCcceEEEEecCchhhhhhhccccCCcccceeeccCC
Confidence 543 4788999999655544444445555666666555543
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.6e-07 Score=108.05 Aligned_cols=272 Identities=16% Similarity=0.153 Sum_probs=164.2
Q ss_pred CCEEEEEECCCCCEEEEEeC----CcEEEEEECCC--Ce--EEEEEccCCCCeEEEEEcCCCcEEEEEeC-CCeEEEEEC
Q 000270 244 NAVYCAIFDRSGRYVITGSD----DRLVKIWSMET--AY--CLASCRGHEGDITDLAVSSNNALVASASN-DCIIRVWRL 314 (1749)
Q Consensus 244 ~~Vt~VaFSPDG~~LATGS~----DGtVrIWDl~T--g~--~l~tL~gHs~~VtsLafSPDg~lLASGS~-DGtIrVWDl 314 (1749)
.....++++|++++|.++.. +|.|..|.+.. +. .+............++++|++++|+++.. +|.|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 34566889999999998866 57999998875 33 33334334456678999999999888864 899999999
Q ss_pred CC-CceEEE---ec----------CCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCc--ccceeecCCCCCccc
Q 000270 315 PD-GLPISV---LR----------GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ--FSPRIYIPRPSDAVA 378 (1749)
Q Consensus 315 ~t-gk~l~t---L~----------gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~--~l~~l~~~~~~~~~~ 378 (1749)
.. |..... +. .......++.|+|+++ +++++.-....|.+|++.... +.....+
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~--~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~-------- 186 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR--FVYVPDLGADRVYVYDIDDDTGKLTPVDSI-------- 186 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS--EEEEEETTTTEEEEEEE-TTS-TEEEEEEE--------
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCC--EEEEEecCCCEEEEEEEeCCCceEEEeecc--------
Confidence 86 433222 21 1234578999999987 233434444579999987654 2111111
Q ss_pred CCCCCCCCCCCCCCCceEEEEEcCCCCEEEEe-cCCCcEEEEeCCCCCCCCCCCCCcceeeec----CC--CCCeEEEEE
Q 000270 379 GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG-SSDTLARVWNACKPNTDDSDQPNHEIDVLS----GH--ENDVNYVQF 451 (1749)
Q Consensus 379 g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSG-s~DGtVrIWDl~t~~~~~s~~~~~~i~~l~----gH--~~~V~sVaf 451 (1749)
..........++|+|+|+++.+. -.++.|.+|++..... ....+.... +. ......|++
T Consensus 187 ---------~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~i~i 252 (345)
T PF10282_consen 187 ---------KVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDG-----SLTEIQTISTLPEGFTGENAPAEIAI 252 (345)
T ss_dssp ---------ECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT-----EEEEEEEEESCETTSCSSSSEEEEEE
T ss_pred ---------ccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCC-----ceeEEEEeeeccccccccCCceeEEE
Confidence 01234558899999999977655 4577899998862110 011111111 11 125778889
Q ss_pred cCCCcccccccccCCCCCCCCcccccccCCCEE-EEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCC
Q 000270 452 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI-VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRG 530 (1749)
Q Consensus 452 Spdg~as~~s~~~~~~~~~~~~~~~s~~~~~~L-aSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g 530 (1749)
+|++ ++| ++....++|.+|++.......
T Consensus 253 spdg--------------------------~~lyvsnr~~~sI~vf~~d~~~g~l------------------------- 281 (345)
T PF10282_consen 253 SPDG--------------------------RFLYVSNRGSNSISVFDLDPATGTL------------------------- 281 (345)
T ss_dssp -TTS--------------------------SEEEEEECTTTEEEEEEECTTTTTE-------------------------
T ss_pred ecCC--------------------------CEEEEEeccCCEEEEEEEecCCCce-------------------------
Confidence 9887 554 445567789999984311000
Q ss_pred CCcccccCCCCCeeEEEEcCCCCEEEEEe-CCCeEEEEEC--CCCceEEEec-CCCCCeEEEEE
Q 000270 531 GPRQRILPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNA--ADGSLVHSLT-GHTESTYVLDV 590 (1749)
Q Consensus 531 ~~i~~l~~h~~~VtsVafSPDG~~LATGs-~DGtI~VWDl--~tgklv~tL~-gH~~~VtsLaf 590 (1749)
..+..+.........++++|+|++|+++. .++.|.+|++ .+|.+...-. -.-....||.|
T Consensus 282 ~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 282 TLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 00111111233478899999999999887 5668988865 5676554332 12233455554
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.1e-09 Score=122.77 Aligned_cols=175 Identities=18% Similarity=0.256 Sum_probs=134.3
Q ss_pred eEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECC-------CCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCC
Q 000270 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME-------TAYCLASCRGHEGDITDLAVSSNNALVASASNDC 307 (1749)
Q Consensus 235 ~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~-------Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DG 307 (1749)
.+..+.||...|..++--.+.+-+++++.|.+|++|.+. |..+..+++.|..+|.++.|..+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 356789999999999887788889999999999999985 335777889999999999999998888764 78
Q ss_pred eEEEEECCCCceEEEec--CCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCC
Q 000270 308 IIRVWRLPDGLPISVLR--GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS 385 (1749)
Q Consensus 308 tIrVWDl~tgk~l~tL~--gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~ 385 (1749)
.|.+||---|+++..+. ...+.+..|...++-.....++-++...+|+++|.+.+.....+.+..
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcn------------- 871 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCN------------- 871 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEecc-------------
Confidence 99999987777665332 122344445555543333234445788999999999887766664321
Q ss_pred CCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCC
Q 000270 386 SSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNT 426 (1749)
Q Consensus 386 ~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~ 426 (1749)
..+....+.|++..+.|+++++|-..|.|.+.|.+++..
T Consensus 872 --a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~v 910 (1034)
T KOG4190|consen 872 --APGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKV 910 (1034)
T ss_pred --CCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCce
Confidence 123446689999999999999999999999999988654
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-08 Score=124.44 Aligned_cols=287 Identities=19% Similarity=0.212 Sum_probs=184.9
Q ss_pred CCEEEEEECCCCCEEEEEeCCcEEEEEECCC-CeEEEEEccC--CCCeEEEEEcCCCc--EEEEEeCCCeEEEEECCCC-
Q 000270 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMET-AYCLASCRGH--EGDITDLAVSSNNA--LVASASNDCIIRVWRLPDG- 317 (1749)
Q Consensus 244 ~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~T-g~~l~tL~gH--s~~VtsLafSPDg~--lLASGS~DGtIrVWDl~tg- 317 (1749)
+++.++.++|.|+-+|+++.-| +.|.|+.. +...+-+. | .-.|-++.|++... +-++......-.+|++...
T Consensus 25 ~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred CcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 5677888999999999999887 45556653 33333232 3 23467788887432 3333344445678998532
Q ss_pred --ceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCce
Q 000270 318 --LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395 (1749)
Q Consensus 318 --k~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~V 395 (1749)
..-..+.+|+..|+.+.|.|... ..|++++.|-.|..||++......-.. ..-...-
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~p--dVlatcsvdt~vh~wd~rSp~~p~ys~-------------------~~w~s~a 161 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHP--DVLATCSVDTYVHAWDMRSPHRPFYST-------------------SSWRSAA 161 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCC--cceeeccccccceeeeccCCCcceeee-------------------ecccccC
Confidence 34456789999999999999865 379999999999999998754321111 1112234
Q ss_pred EEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCccc
Q 000270 396 FCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475 (1749)
Q Consensus 396 t~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~ 475 (1749)
..++|+.....+.+.+....|++||.+.+ ...+..+++|...|+.+.|..-.
T Consensus 162 sqVkwnyk~p~vlasshg~~i~vwd~r~g--------s~pl~s~K~~vs~vn~~~fnr~~-------------------- 213 (1081)
T KOG0309|consen 162 SQVKWNYKDPNVLASSHGNDIFVWDLRKG--------STPLCSLKGHVSSVNSIDFNRFK-------------------- 213 (1081)
T ss_pred ceeeecccCcchhhhccCCceEEEeccCC--------CcceEEecccceeeehHHHhhhh--------------------
Confidence 56788774444455566778999999865 34577788899999988887532
Q ss_pred ccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCC---
Q 000270 476 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN--- 552 (1749)
Q Consensus 476 ~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG--- 552 (1749)
...+.+++.||+|+.|+....... |.. ......+|..-.+-|-|
T Consensus 214 -----~s~~~s~~~d~tvkfw~y~kSt~e-----~~~-----------------------~vtt~~piw~~r~~Pfg~g~ 260 (1081)
T KOG0309|consen 214 -----YSEIMSSSNDGTVKFWDYSKSTTE-----SKR-----------------------TVTTNFPIWRGRYLPFGEGY 260 (1081)
T ss_pred -----hhhhcccCCCCceeeecccccccc-----cce-----------------------eccccCcceeccccccCcee
Confidence 367899999999999998753211 111 11112222223333322
Q ss_pred --------CEEEEEeCCCeEEEEECCC-CceEEEecCCCCCeEEEEEcCC---------CCcEEEEEeCCCcEEEEeCCC
Q 000270 553 --------RFVLAAIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPF---------NPRIAMSAGYDGKTIVWDIWE 614 (1749)
Q Consensus 553 --------~~LATGs~DGtI~VWDl~t-gklv~tL~gH~~~VtsLafSPd---------d~rlLaSgs~DGtIrVWDl~t 614 (1749)
..+.----+.....|++.+ .+++++|.||.+.|....|-.. ....|+|-+.|.++++|-+.+
T Consensus 261 ~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 261 CIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred EeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 2111112223344566654 4689999999998877766331 124678888899999998743
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.4e-07 Score=117.22 Aligned_cols=162 Identities=14% Similarity=0.082 Sum_probs=105.9
Q ss_pred EEEEccCCCCEEEEEECCCCCEEEEEeCC---cEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEE-EeCCCe--E
Q 000270 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDD---RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVAS-ASNDCI--I 309 (1749)
Q Consensus 236 i~tL~GH~~~Vt~VaFSPDG~~LATGS~D---GtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLAS-GS~DGt--I 309 (1749)
.+.+..+...+.+.+|+|||++|+..+.+ ..|.+||+.+++... +....+.....+|+|||+.|+. .+.+|. |
T Consensus 210 ~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~I 288 (448)
T PRK04792 210 EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEI 288 (448)
T ss_pred ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEE
Confidence 45566677788999999999999876542 368999998876432 2222334457899999997765 455664 8
Q ss_pred EEEECCCCceEEEecCCCCceEEEEeccCCCcceEEE-eecCCCc--EEEEEcCCCcccceeecCCCCCcccCCCCCCCC
Q 000270 310 RVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLL-SSSDDGT--CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1749)
Q Consensus 310 rVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~La-SgS~DGt--IrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~ 386 (1749)
.+||+.+++. ..+..+...+...+|+||++ .|+ +...+|. |.++|+.+++.. .+..
T Consensus 289 y~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~---~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~---------------- 347 (448)
T PRK04792 289 YVVDIATKAL-TRITRHRAIDTEPSWHPDGK---SLIFTSERGGKPQIYRVNLASGKVS-RLTF---------------- 347 (448)
T ss_pred EEEECCCCCe-EECccCCCCccceEECCCCC---EEEEEECCCCCceEEEEECCCCCEE-EEec----------------
Confidence 8889887764 34444556677899999987 444 4434444 555677666532 2210
Q ss_pred CCCCCCCceEEEEEcCCCCEEEEecC-CC--cEEEEeCCC
Q 000270 387 SAGPQSHQIFCCAFNANGTVFVTGSS-DT--LARVWNACK 423 (1749)
Q Consensus 387 s~~~h~~~Vt~LafSPDG~~LaSGs~-DG--tVrIWDl~t 423 (1749)
........+|+|||++|+..+. ++ .|.++|+.+
T Consensus 348 ----~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~ 383 (448)
T PRK04792 348 ----EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET 383 (448)
T ss_pred ----CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCC
Confidence 0111234689999998877654 34 355566654
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3e-07 Score=111.10 Aligned_cols=312 Identities=12% Similarity=0.121 Sum_probs=184.6
Q ss_pred EEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeC-----------CCeEEEEEC
Q 000270 246 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN-----------DCIIRVWRL 314 (1749)
Q Consensus 246 Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~-----------DGtIrVWDl 314 (1749)
-+-+.|||-|.||+|--.-| |.+|--.+...++.|. |. .|.-+.|||..+||+|-+. ...|+|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 46688999999999987766 8999877766666664 54 5889999999999999653 257999999
Q ss_pred CCCceEEEecC--CCCce-EEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCC
Q 000270 315 PDGLPISVLRG--HTAAV-TAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQ 391 (1749)
Q Consensus 315 ~tgk~l~tL~g--Hs~~V-tsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h 391 (1749)
.+|...+.+.. ....+ .-..||.|++ ++|.-.. .+|.||+.....++..- .-.
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdK---y~Arm~~-~sisIyEtpsf~lld~K--------------------slk 345 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDK---YFARMTG-NSISIYETPSFMLLDKK--------------------SLK 345 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCc---eeEEecc-ceEEEEecCceeeeccc--------------------ccC
Confidence 99988887764 22222 3468999987 7776555 45889986543222111 112
Q ss_pred CCceEEEEEcCCCCEEEEecCC-----CcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCC
Q 000270 392 SHQIFCCAFNANGTVFVTGSSD-----TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSS 466 (1749)
Q Consensus 392 ~~~Vt~LafSPDG~~LaSGs~D-----GtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~ 466 (1749)
-..|....|+|.+.+||-=... ..+.+-.+.+ ...+.+..-|.-.=..+.|-..|
T Consensus 346 i~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs---------~~~iRt~nlfnVsDckLhWQk~g----------- 405 (698)
T KOG2314|consen 346 ISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPS---------KREIRTKNLFNVSDCKLHWQKSG----------- 405 (698)
T ss_pred CccccCcccCCCcceEEEEcccccCCcceEEEEecCc---------cceeeeccceeeeccEEEeccCC-----------
Confidence 3458889999998877732110 1122222211 11121111111111122233222
Q ss_pred CCCCCCcccccccCCCEEEEE----------eCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccc
Q 000270 467 KEDSTPKFKNSWFCHDNIVTC----------SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI 536 (1749)
Q Consensus 467 ~~~~~~~~~~s~~~~~~LaSg----------S~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l 536 (1749)
++|+.- +.--.+.|+.++.... + ...
T Consensus 406 ---------------dyLcvkvdR~tK~~~~g~f~n~eIfrireKdI----------------------------p-ve~ 441 (698)
T KOG2314|consen 406 ---------------DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI----------------------------P-VEV 441 (698)
T ss_pred ---------------cEEEEEEEeeccccccceEeeEEEEEeeccCC----------------------------C-cee
Confidence 333221 1111233444332110 0 111
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeC---CCeEEEEECCC----CceEEEecCCCCCeEEEEEcCCCCcEEEEE---eCCCc
Q 000270 537 LPTPRGVNMIVWSLDNRFVLAAIM---DCRICVWNAAD----GSLVHSLTGHTESTYVLDVHPFNPRIAMSA---GYDGK 606 (1749)
Q Consensus 537 ~~h~~~VtsVafSPDG~~LATGs~---DGtI~VWDl~t----gklv~tL~gH~~~VtsLafSPdd~rlLaSg---s~DGt 606 (1749)
......|...+|-|.|..+++-+. ..+|.+|-+.+ .+++..|.. ...+.|.|+| .|++++.+ |..|.
T Consensus 442 velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsP-kG~fvvva~l~s~~g~ 518 (698)
T KOG2314|consen 442 VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSP-KGRFVVVAALVSRRGD 518 (698)
T ss_pred eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcC-CCcEEEEEEecccccc
Confidence 223456889999999998877653 34688887763 233444443 3467899999 55655544 45789
Q ss_pred EEEEeCCCCceEEEEee--------eeccCCCEEEEEcCC------CeEEEEECCCCccc
Q 000270 607 TIVWDIWEGIPIRIYEI--------SRFRDGASIILSDDV------GQLYILNTGQGESQ 652 (1749)
Q Consensus 607 IrVWDl~tGk~l~tl~~--------~~~sDG~~LAsgd~D------G~I~IWdl~tGe~~ 652 (1749)
+.++|+.-..+..+-.. .+-|.|++++++++. ..-+||++ .|..+
T Consensus 519 l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tf-qGrll 577 (698)
T KOG2314|consen 519 LEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTF-QGRLL 577 (698)
T ss_pred eEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEe-ecHHH
Confidence 99999874333322221 244589999988763 35577776 34444
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3e-07 Score=112.79 Aligned_cols=169 Identities=15% Similarity=0.164 Sum_probs=137.6
Q ss_pred CCCCCEEEEEeCCcEEEEEECCCCeEEEEEcc---CCCCeEEEEE--------------------cCCCcEEEEEeCCCe
Q 000270 252 DRSGRYVITGSDDRLVKIWSMETAYCLASCRG---HEGDITDLAV--------------------SSNNALVASASNDCI 308 (1749)
Q Consensus 252 SPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~g---Hs~~VtsLaf--------------------SPDg~lLASGS~DGt 308 (1749)
.|.+.|+|....||.++||+..++++...|.. -++..+++.| +.|...||-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 45678999999999999999999888776652 2344455554 223457788888999
Q ss_pred EEEEECCCCceEEEec--CCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCC
Q 000270 309 IRVWRLPDGLPISVLR--GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1749)
Q Consensus 309 IrVWDl~tgk~l~tL~--gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~ 386 (1749)
|.++++..|+....+. .|.+.|+++.++.+-. .|.+++.|+.+..|+......+....
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~---ciyS~~ad~~v~~~~~~~~~~~~~~~----------------- 141 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG---CIYSVGADLKVVYILEKEKVIIRIWK----------------- 141 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccC---ceEecCCceeEEEEecccceeeeeec-----------------
Confidence 9999999998887775 6999999999998876 89999999999999998877655542
Q ss_pred CCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCC
Q 000270 387 SAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454 (1749)
Q Consensus 387 s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpd 454 (1749)
.....+.+++.+|||..+++++ +.|++||+.+ ...+..+.||.++|.+++|...
T Consensus 142 ---~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~---------kevv~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 142 ---EQKPLVSSLCISPDGKILLTAS--RQIKVLDIET---------KEVVITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred ---cCCCccceEEEcCCCCEEEecc--ceEEEEEccC---------ceEEEEecCCCcceEEEEEEEe
Confidence 2345588999999999999886 6899999976 5678999999999999999754
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.2e-06 Score=116.13 Aligned_cols=343 Identities=14% Similarity=0.165 Sum_probs=200.5
Q ss_pred CCCEEEEEECCCCCEEEEEeCCcEEEEEECC---------------C--------CeEEEEEcc----------------
Q 000270 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSME---------------T--------AYCLASCRG---------------- 283 (1749)
Q Consensus 243 ~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~---------------T--------g~~l~tL~g---------------- 283 (1749)
..+|.|++||||+..||..+.+++|.+-+-. . |+.-..|+|
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 4689999999999999999888888876421 0 011011111
Q ss_pred --------CCCCeEEEEEcCCCcEEEEEeC---C---CeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeec
Q 000270 284 --------HEGDITDLAVSSNNALVASASN---D---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS 349 (1749)
Q Consensus 284 --------Hs~~VtsLafSPDg~lLASGS~---D---GtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS 349 (1749)
+...-..|+|-.||.++|+.+. . ..||||+- .|....+-..-.+--.+++|.|.|+ ++|+..
T Consensus 200 ~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~---lIA~~q 275 (928)
T PF04762_consen 200 KVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGN---LIASSQ 275 (928)
T ss_pred ccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCC---EEEEEE
Confidence 2234567889999999998875 2 57999995 4766555554555567899999997 777654
Q ss_pred C---CCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCC
Q 000270 350 D---DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNT 426 (1749)
Q Consensus 350 ~---DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~ 426 (1749)
. ...|.+|.- +|.....+.++ .......|..++|++|+..||+...|. |.+|-..+..
T Consensus 276 ~~~~~~~VvFfEr-NGLrhgeF~l~----------------~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH- 336 (928)
T PF04762_consen 276 RLPDRHDVVFFER-NGLRHGEFTLR----------------FDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH- 336 (928)
T ss_pred EcCCCcEEEEEec-CCcEeeeEecC----------------CCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE-
Confidence 3 345666763 33322223221 123455789999999999999977555 9999885422
Q ss_pred CCCCCCCcceeeecC-CCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEec----CCC
Q 000270 427 DDSDQPNHEIDVLSG-HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIP----RSR 501 (1749)
Q Consensus 427 ~~s~~~~~~i~~l~g-H~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl----~s~ 501 (1749)
+...+.+.- ....+..+.|+|.. +..|...+.+|.+..+++ ..+
T Consensus 337 ------WYLKqei~~~~~~~~~~~~Wdpe~-------------------------p~~L~v~t~~g~~~~~~~~~~v~~s 385 (928)
T PF04762_consen 337 ------WYLKQEIRFSSSESVNFVKWDPEK-------------------------PLRLHVLTSNGQYEIYDFAWDVSRS 385 (928)
T ss_pred ------EEEEEEEEccCCCCCCceEECCCC-------------------------CCEEEEEecCCcEEEEEEEEEEEec
Confidence 222222322 22344558898864 245666666666654332 221
Q ss_pred CCC-----ccccc------cccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 000270 502 RSH-----PKAAR------WTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAA 570 (1749)
Q Consensus 502 k~~-----~~~~~------~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~ 570 (1749)
... +.... ....+...+-++|+.. ........|..++|++++..+|+-..||.|.+|...
T Consensus 386 ~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~---------~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 386 PGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSS---------YELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWD 456 (928)
T ss_pred CCCCccCceEEEEEeCCeEEEecccccCCCchHhc---------eEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEec
Confidence 110 00000 0001111111111111 112234679999999999989999999999999854
Q ss_pred CCce--------EEEec----------CCCCCeEEEEEcCCCCcEEEEEeCC---CcEEEEeCCCCceE---EEEee---
Q 000270 571 DGSL--------VHSLT----------GHTESTYVLDVHPFNPRIAMSAGYD---GKTIVWDIWEGIPI---RIYEI--- 623 (1749)
Q Consensus 571 tgkl--------v~tL~----------gH~~~VtsLafSPdd~rlLaSgs~D---GtIrVWDl~tGk~l---~tl~~--- 623 (1749)
.... ...+. .-...+..++|.. +..+++....+ ..|.++++...... .....
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 535 (928)
T PF04762_consen 457 LKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLN-DDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDG 535 (928)
T ss_pred CCCcccccCcchhhhcccccccccccccccccEEEEEEeC-CCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCc
Confidence 3221 11111 1234578888877 44444444443 67888887543321 11110
Q ss_pred -----eeccCCCEEEEEcCCCeEEEEECCCC
Q 000270 624 -----SRFRDGASIILSDDVGQLYILNTGQG 649 (1749)
Q Consensus 624 -----~~~sDG~~LAsgd~DG~I~IWdl~tG 649 (1749)
...++...++.-..+|.|+.++....
T Consensus 536 ~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~ 566 (928)
T PF04762_consen 536 VVLIISSSPDSGSLYIQTNDGKVFQLSSDGE 566 (928)
T ss_pred eEEEEeeCCCCcEEEEEECCCEEEEeecCCC
Confidence 01113334677777888887766544
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.6e-06 Score=103.22 Aligned_cols=270 Identities=13% Similarity=0.101 Sum_probs=160.9
Q ss_pred CeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeec---------CCCcEEEEEcCCCcccceeecCCCCCcc
Q 000270 307 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS---------DDGTCRIWDARYSQFSPRIYIPRPSDAV 377 (1749)
Q Consensus 307 GtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS---------~DGtIrIWDl~tg~~l~~l~~~~~~~~~ 377 (1749)
++|.|.|..+++.+..+.....+- .+ ++||++. +.++.+ .+..|.+||+.+.+.+..+.++......
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~--lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSF--FAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCE--EEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 799999999999988887443333 34 9999872 334445 6889999999999988887654221111
Q ss_pred cCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEec-C-CCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCC
Q 000270 378 AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS-S-DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCA 455 (1749)
Q Consensus 378 ~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs-~-DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg 455 (1749)
.......++++|||++|++.. . +..|.++|+.+.+ .+....- .+...-+..+.
T Consensus 103 -------------~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k---------vv~ei~v-p~~~~vy~t~e-- 157 (352)
T TIGR02658 103 -------------VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA---------FVRMMDV-PDCYHIFPTAN-- 157 (352)
T ss_pred -------------ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCc---------EEEEEeC-CCCcEEEEecC--
Confidence 122345789999999988766 3 6899999997643 2222221 11111111111
Q ss_pred cccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCccc
Q 000270 456 VASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR 535 (1749)
Q Consensus 456 ~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~ 535 (1749)
..+.+.+.||......+........ .. ..+ ..+. ..-
T Consensus 158 --------------------------~~~~~~~~Dg~~~~v~~d~~g~~~~-----~~--~~v---------f~~~-~~~ 194 (352)
T TIGR02658 158 --------------------------DTFFMHCRDGSLAKVGYGTKGNPKI-----KP--TEV---------FHPE-DEY 194 (352)
T ss_pred --------------------------CccEEEeecCceEEEEecCCCceEE-----ee--eee---------ecCC-ccc
Confidence 1222334455544433322110000 00 000 0000 000
Q ss_pred ccCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEEECCCC-----ceEEEecC-------CCCCeEEEEEcCCCCcEEEEE-
Q 000270 536 ILPTPRGVNMIVWSL-DNRFVLAAIMDCRICVWNAADG-----SLVHSLTG-------HTESTYVLDVHPFNPRIAMSA- 601 (1749)
Q Consensus 536 l~~h~~~VtsVafSP-DG~~LATGs~DGtI~VWDl~tg-----klv~tL~g-------H~~~VtsLafSPdd~rlLaSg- 601 (1749)
+. ..+ .|++ +|+++++... |.|.+.|+... ..+..+.. ..+.+.-++++++++++++..
T Consensus 195 v~--~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~ 267 (352)
T TIGR02658 195 LI--NHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLAD 267 (352)
T ss_pred cc--cCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEec
Confidence 00 111 3455 8888887777 99999996443 33333221 233445599999666666533
Q ss_pred e--------CCCcEEEEeCCCCceEEEEeeee-------ccCCC-EEEEEc-CCCeEEEEECCCCcccccc
Q 000270 602 G--------YDGKTIVWDIWEGIPIRIYEISR-------FRDGA-SIILSD-DVGQLYILNTGQGESQKDA 655 (1749)
Q Consensus 602 s--------~DGtIrVWDl~tGk~l~tl~~~~-------~sDG~-~LAsgd-~DG~I~IWdl~tGe~~k~~ 655 (1749)
+ ..+.|.++|+.+++.+..+..+. .+||+ +|++.. .++.|.|+|+.+++.++..
T Consensus 268 ~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 268 QRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 1 22579999999999999988653 33999 777666 5789999999988776553
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.8e-08 Score=133.46 Aligned_cols=227 Identities=12% Similarity=0.215 Sum_probs=167.6
Q ss_pred CcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCc
Q 000270 297 NALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDA 376 (1749)
Q Consensus 297 g~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~ 376 (1749)
++.+.....++...-|..+.+.. .++.+-..|.++.-+|... +.++|+.||.|++|....++.+.....
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~~--~~k~~v~~v~r~~sHp~~~---~Yltgs~dgsv~~~~w~~~~~v~~~rt------ 2248 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASV--MIKHPVENVRRMTSHPSDP---YYLTGSQDGSVRMFEWGHGQQVVCFRT------ 2248 (2439)
T ss_pred cccCCcccCCccccceeccccee--EeecccCceeeecCCCCCc---eEEecCCCceEEEEeccCCCeEEEeec------
Confidence 34455555566666666443322 2233455677777777655 789999999999999888776655431
Q ss_pred ccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCc
Q 000270 377 VAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAV 456 (1749)
Q Consensus 377 ~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~ 456 (1749)
.....|+.+.|+..|+.+..+..||.+.+|.+. .+.......|......+.|-..
T Consensus 2249 -------------~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~----------pk~~~s~qchnk~~~Df~Fi~s-- 2303 (2439)
T KOG1064|consen 2249 -------------AGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS----------PKPYTSWQCHNKALSDFRFIGS-- 2303 (2439)
T ss_pred -------------cCcchhhhhhhcccCCceeeeccCCceeecccC----------CcceeccccCCccccceeeeeh--
Confidence 223678999999999999999999999999984 3345566778877777777652
Q ss_pred ccccccccCCCCCCCCcccccccCCCEEEEE---eCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCc
Q 000270 457 ASRFSLADSSKEDSTPKFKNSWFCHDNIVTC---SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR 533 (1749)
Q Consensus 457 as~~s~~~~~~~~~~~~~~~s~~~~~~LaSg---S~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i 533 (1749)
.++++ +.++.+.+||..-.. ....+
T Consensus 2304 --------------------------~~~tag~s~d~~n~~lwDtl~~~--------------------------~~s~v 2331 (2439)
T KOG1064|consen 2304 --------------------------LLATAGRSSDNRNVCLWDTLLPP--------------------------MNSLV 2331 (2439)
T ss_pred --------------------------hhhccccCCCCCcccchhcccCc--------------------------cccee
Confidence 34443 356789999865210 11112
Q ss_pred ccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 000270 534 QRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1749)
Q Consensus 534 ~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~ 613 (1749)
. ..|..+++++++-|.-++|++|+.+|.|+|||+...+++++++. ++ ...++++|+..|.|+||++.
T Consensus 2332 ~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~--~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2332 H--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD--TREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred e--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh--hhheeeccCcccceEEEEcc
Confidence 2 67899999999999999999999999999999998888887765 32 34678899999999999999
Q ss_pred CCceEEEEeee
Q 000270 614 EGIPIRIYEIS 624 (1749)
Q Consensus 614 tGk~l~tl~~~ 624 (1749)
.-..+.++...
T Consensus 2399 ~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2399 EFGLLHTFPSE 2409 (2439)
T ss_pred ccchhhcCchh
Confidence 88888887653
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.1e-08 Score=130.14 Aligned_cols=193 Identities=15% Similarity=0.255 Sum_probs=153.2
Q ss_pred EEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEc-cCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCC
Q 000270 238 RVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVSSNNALVASASNDCIIRVWRLPD 316 (1749)
Q Consensus 238 tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~-gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~t 316 (1749)
.++.|-..|.|+.-+|...+.+||+.||.|++|....+..+..++ +....|+.+.|+.+|+-+..+..||.+.+|.+.
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence 345566789999999999999999999999999999988888776 234889999999999999999999999999976
Q ss_pred CceEEEecCCCCceEEEEeccCCCcceEEEee---cCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCC
Q 000270 317 GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS---SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1749)
Q Consensus 317 gk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSg---S~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~ 393 (1749)
.++....+.|......+.|... .++++ +.++.+.+||.--......+ ...|.+
T Consensus 2282 pk~~~s~qchnk~~~Df~Fi~s-----~~~tag~s~d~~n~~lwDtl~~~~~s~v-------------------~~~H~~ 2337 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIGS-----LLATAGRSSDNRNVCLWDTLLPPMNSLV-------------------HTCHDG 2337 (2439)
T ss_pred CcceeccccCCccccceeeeeh-----hhhccccCCCCCcccchhcccCccccee-------------------eeecCC
Confidence 6777778889999999999873 45655 45788999996432211111 146888
Q ss_pred ceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCc
Q 000270 394 QIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1749)
Q Consensus 394 ~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~ 473 (1749)
.++|+++.|..++|++|+.+|.|++||++.. +.+..+.. +. .
T Consensus 2338 gaT~l~~~P~~qllisggr~G~v~l~D~rqr---------ql~h~~~~---------~~-~------------------- 2379 (2439)
T KOG1064|consen 2338 GATVLAYAPKHQLLISGGRKGEVCLFDIRQR---------QLRHTFQA---------LD-T------------------- 2379 (2439)
T ss_pred CceEEEEcCcceEEEecCCcCcEEEeehHHH---------HHHHHhhh---------hh-h-------------------
Confidence 9999999999999999999999999999642 12222211 11 1
Q ss_pred ccccccCCCEEEEEeCCCcEEEEecCC
Q 000270 474 FKNSWFCHDNIVTCSRDGSAIIWIPRS 500 (1749)
Q Consensus 474 ~~~s~~~~~~LaSgS~DGtIrIWDl~s 500 (1749)
..+|++|+..|.++||++..
T Consensus 2380 -------~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2380 -------REYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred -------hheeeccCcccceEEEEccc
Confidence 26899999999999999886
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.1e-06 Score=96.92 Aligned_cols=150 Identities=19% Similarity=0.156 Sum_probs=115.8
Q ss_pred CCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCC
Q 000270 403 NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHD 482 (1749)
Q Consensus 403 DG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~ 482 (1749)
+|.+++..+ .|.+.|.+... -.....+|.+.|....+..+. .
T Consensus 331 ~Gd~ia~VS-RGkaFi~~~~~-----------~~~iqv~~~~~VrY~r~~~~~--------------------------e 372 (668)
T COG4946 331 NGDYIALVS-RGKAFIMRPWD-----------GYSIQVGKKGGVRYRRIQVDP--------------------------E 372 (668)
T ss_pred CCcEEEEEe-cCcEEEECCCC-----------CeeEEcCCCCceEEEEEccCC--------------------------c
Confidence 677888776 46666766532 122334677788888887665 5
Q ss_pred EEEEEeCCC-cEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCC
Q 000270 483 NIVTCSRDG-SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD 561 (1749)
Q Consensus 483 ~LaSgS~DG-tIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~D 561 (1749)
-++.|..|| .+-|+|..+++ ..++...-+.|.++..+++|++++++...
T Consensus 373 ~~vigt~dgD~l~iyd~~~~e------------------------------~kr~e~~lg~I~av~vs~dGK~~vvaNdr 422 (668)
T COG4946 373 GDVIGTNDGDKLGIYDKDGGE------------------------------VKRIEKDLGNIEAVKVSPDGKKVVVANDR 422 (668)
T ss_pred ceEEeccCCceEEEEecCCce------------------------------EEEeeCCccceEEEEEcCCCcEEEEEcCc
Confidence 788899999 89999988533 34455566789999999999999999999
Q ss_pred CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC----cEEEEeCCCCceEEEE
Q 000270 562 CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDG----KTIVWDIWEGIPIRIY 621 (1749)
Q Consensus 562 GtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DG----tIrVWDl~tGk~l~tl 621 (1749)
..|.+.|+.+|.....=+...+-|+.++||| +++++|-+--+| .|+++|+.+++.....
T Consensus 423 ~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 423 FELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred eEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEec
Confidence 9999999999998776667778899999999 788887665554 5889999888766544
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.5e-06 Score=116.06 Aligned_cols=276 Identities=12% Similarity=0.107 Sum_probs=163.2
Q ss_pred EEEECCC-CCEEEEEeCCcEEEEEECCCCeEEEEEcc-C-------------CCCeEEEEEcCCCcEEEEE-eCCCeEEE
Q 000270 248 CAIFDRS-GRYVITGSDDRLVKIWSMETAYCLASCRG-H-------------EGDITDLAVSSNNALVASA-SNDCIIRV 311 (1749)
Q Consensus 248 ~VaFSPD-G~~LATGS~DGtVrIWDl~Tg~~l~tL~g-H-------------s~~VtsLafSPDg~lLASG-S~DGtIrV 311 (1749)
.++++++ |+++++-+..+.|++||.. |..+..+.+ . -.....|+|++++..|.++ ...+.|++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 5788874 6677777788999999986 444444432 1 1235789999987755554 44678999
Q ss_pred EECCCCceEEEecCC-----------------CCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCC
Q 000270 312 WRLPDGLPISVLRGH-----------------TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS 374 (1749)
Q Consensus 312 WDl~tgk~l~tL~gH-----------------s~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~ 374 (1749)
+|+.++. +.++.+. -.....|+|+|++. .++++.+.++.|++||..++... .+......
T Consensus 651 id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g--~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~ 726 (1057)
T PLN02919 651 IDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNE--KVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE 726 (1057)
T ss_pred EecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCC--eEEEEECCCCeEEEEECCCCeEE-EEecCCcc
Confidence 9987764 3333211 11246799999544 26677788899999998776532 11100000
Q ss_pred CcccCCCCCCCCCCCCCCCceEEEEEcCCCC-EEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcC
Q 000270 375 DAVAGRNMAPSSSAGPQSHQIFCCAFNANGT-VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSG 453 (1749)
Q Consensus 375 ~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~-~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSp 453 (1749)
....+. ......-.....|+|+|+|. ++++.+.++.|++||+.++. ...+.+ ...+ + +
T Consensus 727 ~~~~g~-----~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~----------~~~~~g-g~~~----~-~ 785 (1057)
T PLN02919 727 RNLNGS-----SGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG----------SRLLAG-GDPT----F-S 785 (1057)
T ss_pred ccCCCC-----ccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc----------EEEEEe-cccc----c-C
Confidence 000000 00011123467799999987 44555667889999985321 000000 0000 0 0
Q ss_pred CCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCc
Q 000270 454 CAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR 533 (1749)
Q Consensus 454 dg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i 533 (1749)
. ..+-.+..||.. .
T Consensus 786 ~---------------------------~l~~fG~~dG~g--------------------------------------~- 799 (1057)
T PLN02919 786 D---------------------------NLFKFGDHDGVG--------------------------------------S- 799 (1057)
T ss_pred c---------------------------ccccccCCCCch--------------------------------------h-
Confidence 0 000001111100 0
Q ss_pred ccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEec-------------CCCCCeEEEEEcCCCCcEEEE
Q 000270 534 QRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT-------------GHTESTYVLDVHPFNPRIAMS 600 (1749)
Q Consensus 534 ~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~-------------gH~~~VtsLafSPdd~rlLaS 600 (1749)
.. .-.....++++++|..+++-..+++|++||..++....... +.......|++++ +++++++
T Consensus 800 ~~---~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVa 875 (1057)
T PLN02919 800 EV---LLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVA 875 (1057)
T ss_pred hh---hccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEE
Confidence 00 01123478999999988888899999999998876653321 1123567899999 6678888
Q ss_pred EeCCCcEEEEeCCCCceEE
Q 000270 601 AGYDGKTIVWDIWEGIPIR 619 (1749)
Q Consensus 601 gs~DGtIrVWDl~tGk~l~ 619 (1749)
-+.+++|++||+.+++...
T Consensus 876 Dt~Nn~Irvid~~~~~~~~ 894 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEAAE 894 (1057)
T ss_pred ECCCCEEEEEECCCCccce
Confidence 8899999999999887643
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.73 E-value=3e-06 Score=104.79 Aligned_cols=266 Identities=15% Similarity=0.099 Sum_probs=158.5
Q ss_pred CCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceE--
Q 000270 254 SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVT-- 331 (1749)
Q Consensus 254 DG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~Vt-- 331 (1749)
++..++.++.+|.|..||..+|+.+...... +.+.+.... .+..++.++.+|.|..||..+|+.+..+......+.
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~ 181 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR 181 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence 4667888889999999999999988765532 222221111 344667778899999999999998877654322111
Q ss_pred ---EEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCce-EEEEEcCCCCEE
Q 000270 332 ---AIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI-FCCAFNANGTVF 407 (1749)
Q Consensus 332 ---sIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~V-t~LafSPDG~~L 407 (1749)
+..+. + . .++.+..+|.|..+|+.+|+.+.......+. +... . .....+ ....+ .+..+
T Consensus 182 ~~~sp~~~-~-~---~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~----g~~~--~----~~~~~~~~~p~~--~~~~v 244 (377)
T TIGR03300 182 GSASPVIA-D-G---GVLVGFAGGKLVALDLQTGQPLWEQRVALPK----GRTE--L----ERLVDVDGDPVV--DGGQV 244 (377)
T ss_pred CCCCCEEE-C-C---EEEEECCCCEEEEEEccCCCEeeeeccccCC----CCCc--h----hhhhccCCccEE--ECCEE
Confidence 11111 2 2 5777888899999999998865543221110 0000 0 000000 01111 24567
Q ss_pred EEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEE
Q 000270 408 VTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC 487 (1749)
Q Consensus 408 aSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSg 487 (1749)
++++.+|.++.||..+++ .+.... .. ..... ...+..++.+
T Consensus 245 y~~~~~g~l~a~d~~tG~---------~~W~~~-~~-~~~~p----------------------------~~~~~~vyv~ 285 (377)
T TIGR03300 245 YAVSYQGRVAALDLRSGR---------VLWKRD-AS-SYQGP----------------------------AVDDNRLYVT 285 (377)
T ss_pred EEEEcCCEEEEEECCCCc---------EEEeec-cC-CccCc----------------------------eEeCCEEEEE
Confidence 777889999999996542 111111 00 00000 0123678888
Q ss_pred eCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEE
Q 000270 488 SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVW 567 (1749)
Q Consensus 488 S~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VW 567 (1749)
+.+|.|..+|..+++.. |.... +. ...+...+. .+..|++++.+|.|++|
T Consensus 286 ~~~G~l~~~d~~tG~~~-----W~~~~---------------------~~--~~~~ssp~i--~g~~l~~~~~~G~l~~~ 335 (377)
T TIGR03300 286 DADGVVVALDRRSGSEL-----WKNDE---------------------LK--YRQLTAPAV--VGGYLVVGDFEGYLHWL 335 (377)
T ss_pred CCCCeEEEEECCCCcEE-----Ecccc---------------------cc--CCccccCEE--ECCEEEEEeCCCEEEEE
Confidence 89999999999876521 22100 00 001111122 36688999999999999
Q ss_pred ECCCCceEEEecCCCCCeE-EEEEcCCCCcEEEEEeCCCcEEEE
Q 000270 568 NAADGSLVHSLTGHTESTY-VLDVHPFNPRIAMSAGYDGKTIVW 610 (1749)
Q Consensus 568 Dl~tgklv~tL~gH~~~Vt-sLafSPdd~rlLaSgs~DGtIrVW 610 (1749)
|..+|+.+..+..+...+. +.++. +++ |+.++.||.|..|
T Consensus 336 d~~tG~~~~~~~~~~~~~~~sp~~~--~~~-l~v~~~dG~l~~~ 376 (377)
T TIGR03300 336 SREDGSFVARLKTDGSGIASPPVVV--GDG-LLVQTRDGDLYAF 376 (377)
T ss_pred ECCCCCEEEEEEcCCCccccCCEEE--CCE-EEEEeCCceEEEe
Confidence 9999999998886664433 33332 344 5578899998775
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.7e-05 Score=107.68 Aligned_cols=299 Identities=13% Similarity=0.186 Sum_probs=176.9
Q ss_pred CEEEEEECCCCCEE--EEEeCCc--EEEEEECCCC---eEEEEEc-----cCCCCeEEEEEcCCCcEEEEEeCCCeEEEE
Q 000270 245 AVYCAIFDRSGRYV--ITGSDDR--LVKIWSMETA---YCLASCR-----GHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1749)
Q Consensus 245 ~Vt~VaFSPDG~~L--ATGS~DG--tVrIWDl~Tg---~~l~tL~-----gHs~~VtsLafSPDg~lLASGS~DGtIrVW 312 (1749)
.+...+|++....+ +++.... .|.+...... ..+..+. ...+.|.++.|.++...|+.+..+|.|.+.
T Consensus 23 ~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~ 102 (928)
T PF04762_consen 23 PITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILV 102 (928)
T ss_pred ccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEE
Confidence 45666676655433 3333322 3444443322 2344443 235789999999999999999999999999
Q ss_pred ----ECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCC--------------
Q 000270 313 ----RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS-------------- 374 (1749)
Q Consensus 313 ----Dl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~-------------- 374 (1749)
+..+.. +.....-...|.+++||||.. +|+.++.+|+|.+..- +...+....+....
T Consensus 103 ~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~E---lla~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkK 177 (928)
T PF04762_consen 103 REDPDPDEDE-IEIVGSVDSGILAASWSPDEE---LLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKK 177 (928)
T ss_pred EccCCCCCce-eEEEEEEcCcEEEEEECCCcC---EEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcc
Confidence 544432 222223457899999999998 8888888888887542 22222222111000
Q ss_pred -CcccCCCCCC--------C------CCCCCCCCceEEEEEcCCCCEEEEecC---C---CcEEEEeCCCCCCCCCCCCC
Q 000270 375 -DAVAGRNMAP--------S------SSAGPQSHQIFCCAFNANGTVFVTGSS---D---TLARVWNACKPNTDDSDQPN 433 (1749)
Q Consensus 375 -~~~~g~~~~~--------~------~s~~~h~~~Vt~LafSPDG~~LaSGs~---D---GtVrIWDl~t~~~~~s~~~~ 433 (1749)
....|..... . .... ....-..++|-.||.+||+.+. . ..|+||+-. +.
T Consensus 178 eTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~-------- 247 (928)
T PF04762_consen 178 ETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GE-------- 247 (928)
T ss_pred cCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ce--------
Confidence 0000111110 0 0011 3335668999999999998775 3 478999863 21
Q ss_pred cceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeC---CCcEEEEecCCCCCCcccccc
Q 000270 434 HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR---DGSAIIWIPRSRRSHPKAARW 510 (1749)
Q Consensus 434 ~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~---DGtIrIWDl~s~k~~~~~~~~ 510 (1749)
...+...-.+--.+++|.|.| ++|++... ...|.+|.-+. -.++.
T Consensus 248 -L~stSE~v~gLe~~l~WrPsG--------------------------~lIA~~q~~~~~~~VvFfErNG-Lrhge---- 295 (928)
T PF04762_consen 248 -LQSTSEPVDGLEGALSWRPSG--------------------------NLIASSQRLPDRHDVVFFERNG-LRHGE---- 295 (928)
T ss_pred -EEeccccCCCccCCccCCCCC--------------------------CEEEEEEEcCCCcEEEEEecCC-cEeee----
Confidence 111112222233467888887 67776654 23455564332 11111
Q ss_pred ccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eEEEecCC-CCCeEE
Q 000270 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGS--LVHSLTGH-TESTYV 587 (1749)
Q Consensus 511 ~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgk--lv~tL~gH-~~~Vts 587 (1749)
|. ..+......|..++|++|+..||....|. |.+|-..+.. +.+.+.-. ...+..
T Consensus 296 ---F~------------------l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~ 353 (928)
T PF04762_consen 296 ---FT------------------LRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNF 353 (928)
T ss_pred ---Ee------------------cCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCc
Confidence 10 11123445689999999999999988665 9999987754 34444422 334556
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEeC
Q 000270 588 LDVHPFNPRIAMSAGYDGKTIVWDI 612 (1749)
Q Consensus 588 LafSPdd~rlLaSgs~DGtIrVWDl 612 (1749)
+.|+|..+..|.....+|.+..+++
T Consensus 354 ~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 354 VKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred eEECCCCCCEEEEEecCCcEEEEEE
Confidence 9999988887777777777766554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=7e-07 Score=109.71 Aligned_cols=265 Identities=12% Similarity=0.164 Sum_probs=162.2
Q ss_pred ccceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEc--cCCCCeEEEEEcCCCcEEEEEeCCCeE
Q 000270 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR--GHEGDITDLAVSSNNALVASASNDCII 309 (1749)
Q Consensus 232 ~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~--gHs~~VtsLafSPDg~lLASGS~DGtI 309 (1749)
+...-++|.||...|.-+.|+...+.|-|...+|.|.||-+-.|.-..... ...+-|.+++|..||+.|+....||.|
T Consensus 60 nLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGav 139 (1189)
T KOG2041|consen 60 NLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAV 139 (1189)
T ss_pred ccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCE
Confidence 344557899999999999999999999999999999999987664332221 245679999999999999999999999
Q ss_pred EEEECCCCceEE--EecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCC
Q 000270 310 RVWRLPDGLPIS--VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSS 387 (1749)
Q Consensus 310 rVWDl~tgk~l~--tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s 387 (1749)
.|=.+... .+. .+++ .....+.|++|.. .++.+-..|.+.++|... .+...+......... | .
T Consensus 140 IVGsvdGN-RIwgKeLkg--~~l~hv~ws~D~~---~~Lf~~ange~hlydnqg-nF~~Kl~~~c~Vn~t-g-------~ 204 (1189)
T KOG2041|consen 140 IVGSVDGN-RIWGKELKG--QLLAHVLWSEDLE---QALFKKANGETHLYDNQG-NFERKLEKDCEVNGT-G-------I 204 (1189)
T ss_pred EEEeeccc-eecchhcch--heccceeecccHH---HHHhhhcCCcEEEecccc-cHHHhhhhceEEeee-e-------e
Confidence 88776432 222 1221 2345789999986 677788889999999653 322222111100000 0 0
Q ss_pred CCCCCCceEEEEEc--------CCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccc
Q 000270 388 AGPQSHQIFCCAFN--------ANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 459 (1749)
Q Consensus 388 ~~~h~~~Vt~LafS--------PDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~ 459 (1749)
.......|-.+.|. |+...||++...|.+.|-.-.+. ..++.. .-.-.|..+.|+++|
T Consensus 205 ~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND--------~~Pvv~--dtgm~~vgakWnh~G---- 270 (1189)
T KOG2041|consen 205 FSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND--------PEPVVV--DTGMKIVGAKWNHNG---- 270 (1189)
T ss_pred ecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC--------CCCeEE--ecccEeecceecCCC----
Confidence 01112224455553 46678999999998877544221 111111 112456778898887
Q ss_pred cccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCC
Q 000270 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 539 (1749)
Q Consensus 460 ~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h 539 (1749)
..|+.++.+....- +..+.+ ..+-.+-|.....+...
T Consensus 271 ----------------------~vLAvcG~~~da~~-~~d~n~--------------------v~Fysp~G~i~gtlkvp 307 (1189)
T KOG2041|consen 271 ----------------------AVLAVCGNDSDADE-PTDSNK--------------------VHFYSPYGHIVGTLKVP 307 (1189)
T ss_pred ----------------------cEEEEccCcccccC-ccccce--------------------EEEeccchhheEEEecC
Confidence 57777765532110 000000 00001123444555556
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 000270 540 PRGVNMIVWSLDNRFVLAAIMDCRICVWNA 569 (1749)
Q Consensus 540 ~~~VtsVafSPDG~~LATGs~DGtI~VWDl 569 (1749)
...|+.++|-..|-.+|.+. |+.|++=++
T Consensus 308 g~~It~lsWEg~gLriA~Av-dsfiyfanI 336 (1189)
T KOG2041|consen 308 GSCITGLSWEGTGLRIAIAV-DSFIYFANI 336 (1189)
T ss_pred CceeeeeEEcCCceEEEEEe-cceEEEEee
Confidence 67789999988777666553 455554333
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.7e-06 Score=96.84 Aligned_cols=269 Identities=17% Similarity=0.125 Sum_probs=174.4
Q ss_pred CcEEEEEECCCCeEEE--EE-ccCCCCeEEEEEcC---CCc-EEEEEeCCCeEEEEECCCCceEEEecCCCC------ce
Q 000270 264 DRLVKIWSMETAYCLA--SC-RGHEGDITDLAVSS---NNA-LVASASNDCIIRVWRLPDGLPISVLRGHTA------AV 330 (1749)
Q Consensus 264 DGtVrIWDl~Tg~~l~--tL-~gHs~~VtsLafSP---Dg~-lLASGS~DGtIrVWDl~tgk~l~tL~gHs~------~V 330 (1749)
-|.+.++++...+.+. ++ ..-.+.+..|.|.. +|. .|+-+-.+|.|.++..........|++-.. ..
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4678888887654433 11 12345677777764 455 566677789999998765544444443221 24
Q ss_pred EEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcC-CCCEEEE
Q 000270 331 TAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTVFVT 409 (1749)
Q Consensus 331 tsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSP-DG~~LaS 409 (1749)
.++.|++.+. .++++..+|.+.+-+........ ......|...++.+.|+- +.+++.+
T Consensus 125 lslD~~~~~~---~i~vs~s~G~~~~v~~t~~~le~------------------vq~wk~He~E~Wta~f~~~~pnlvyt 183 (339)
T KOG0280|consen 125 LSLDISTSGT---KIFVSDSRGSISGVYETEMVLEK------------------VQTWKVHEFEAWTAKFSDKEPNLVYT 183 (339)
T ss_pred eEEEeeccCc---eEEEEcCCCcEEEEecceeeeee------------------cccccccceeeeeeecccCCCceEEe
Confidence 5778888776 68888889998855544332211 123456888889899976 4468999
Q ss_pred ecCCCcEEEEeCCCCCCCCCCCCCcceee-ecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEe
Q 000270 410 GSSDTLARVWNACKPNTDDSDQPNHEIDV-LSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCS 488 (1749)
Q Consensus 410 Gs~DGtVrIWDl~t~~~~~s~~~~~~i~~-l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS 488 (1749)
|+.|+.+..||++.+ ...+.. ..-|...|.+|.-+|.. +.+|++|+
T Consensus 184 GgDD~~l~~~D~R~p--------~~~i~~n~kvH~~GV~SI~ss~~~-------------------------~~~I~TGs 230 (339)
T KOG0280|consen 184 GGDDGSLSCWDIRIP--------KTFIWHNSKVHTSGVVSIYSSPPK-------------------------PTYIATGS 230 (339)
T ss_pred cCCCceEEEEEecCC--------cceeeecceeeecceEEEecCCCC-------------------------CceEEEec
Confidence 999999999999742 223322 56788899999877643 47999999
Q ss_pred CCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCC-EEEEEeCCCeEEEE
Q 000270 489 RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR-FVLAAIMDCRICVW 567 (1749)
Q Consensus 489 ~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~-~LATGs~DGtI~VW 567 (1749)
.|-.|++||.+.-. .++.. ....++|+.+.++|--. .|++++.-.-.+|-
T Consensus 231 YDe~i~~~DtRnm~----------------------------kPl~~-~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~ 281 (339)
T KOG0280|consen 231 YDECIRVLDTRNMG----------------------------KPLFK-AKVGGGVWRIKHHPEIFHRLLAACMHNGAKIL 281 (339)
T ss_pred cccceeeeehhccc----------------------------Ccccc-CccccceEEEEecchhhhHHHHHHHhcCceEE
Confidence 99999999998521 01100 11236899999998543 23333444446677
Q ss_pred ECCCCc-----eEEEecCCCCCeEEEEEcCCCCcEEEEEe-CCCcEE-EEeCCCCc
Q 000270 568 NAADGS-----LVHSLTGHTESTYVLDVHPFNPRIAMSAG-YDGKTI-VWDIWEGI 616 (1749)
Q Consensus 568 Dl~tgk-----lv~tL~gH~~~VtsLafSPdd~rlLaSgs-~DGtIr-VWDl~tGk 616 (1749)
+.+.+. .+...+.|.+-++.-.|... ..+|+|++ .|..|+ +|-..++.
T Consensus 282 ~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~-~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 282 DSSDKVLEFQIVLPSDKIHDSLCYGGDWDSK-DSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred Eecccccchheeeeccccccceeeccccccc-cceeeeeeccccceeeeeeeccCC
Confidence 765542 33455678777777777542 34667654 677755 78665554
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.2e-05 Score=97.86 Aligned_cols=305 Identities=12% Similarity=0.064 Sum_probs=178.2
Q ss_pred CCEEEEEeCCcEEEEEECCCCeEEEEEccCCC----------Ce-EEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEe
Q 000270 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHEG----------DI-TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL 323 (1749)
Q Consensus 255 G~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~----------~V-tsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL 323 (1749)
+..|++++.+|.|.-+|..+|+.+-...-... .+ ..++. ++..|+.++.+|.|..+|..+|+.+...
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 55677777888999999999988876542210 00 01111 3456677888999999999999988776
Q ss_pred cCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCC
Q 000270 324 RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN 403 (1749)
Q Consensus 324 ~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPD 403 (1749)
............. ++ .++.+..+|.|..+|..+|+.+.......+.. .......++ .. +
T Consensus 147 ~~~~~~~ssP~v~-~~----~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~-----------~~~~~~sP~----v~-~ 205 (394)
T PRK11138 147 KVAGEALSRPVVS-DG----LVLVHTSNGMLQALNESDGAVKWTVNLDVPSL-----------TLRGESAPA----TA-F 205 (394)
T ss_pred cCCCceecCCEEE-CC----EEEEECCCCEEEEEEccCCCEeeeecCCCCcc-----------cccCCCCCE----EE-C
Confidence 5332211111222 22 57778889999999999999877664321100 000001111 11 2
Q ss_pred CCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCC-CCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCC
Q 000270 404 GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE-NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHD 482 (1749)
Q Consensus 404 G~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~-~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~ 482 (1749)
..+++++.+|.+..+|..+++..-....... ...+. .....+..+| ...++
T Consensus 206 -~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~---~~~~~~~~~~~~~~sP------------------------~v~~~ 257 (394)
T PRK11138 206 -GGAIVGGDNGRVSAVLMEQGQLIWQQRISQP---TGATEIDRLVDVDTTP------------------------VVVGG 257 (394)
T ss_pred -CEEEEEcCCCEEEEEEccCChhhheeccccC---CCccchhcccccCCCc------------------------EEECC
Confidence 3466677788888888866432110000000 00000 0000000001 11235
Q ss_pred EEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCC
Q 000270 483 NIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC 562 (1749)
Q Consensus 483 ~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DG 562 (1749)
.++.++.+|.+..+|+.+++. .|...+. ....++ ..+..|++++.+|
T Consensus 258 ~vy~~~~~g~l~ald~~tG~~-----~W~~~~~--------------------------~~~~~~--~~~~~vy~~~~~g 304 (394)
T PRK11138 258 VVYALAYNGNLVALDLRSGQI-----VWKREYG--------------------------SVNDFA--VDGGRIYLVDQND 304 (394)
T ss_pred EEEEEEcCCeEEEEECCCCCE-----EEeecCC--------------------------CccCcE--EECCEEEEEcCCC
Confidence 777788899999999987652 2322110 000111 2466788888999
Q ss_pred eEEEEECCCCceEEEecCCC-CCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEeee---ec--c--CCCEEEE
Q 000270 563 RICVWNAADGSLVHSLTGHT-ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS---RF--R--DGASIIL 634 (1749)
Q Consensus 563 tI~VWDl~tgklv~tL~gH~-~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~---~~--s--DG~~LAs 634 (1749)
.|..+|..+|+.+.....-. ....+..+. ++ .|+.++.||.|.+.|..+|+.+..+... .. + .+..|++
T Consensus 305 ~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~g-~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~~~~l~v 381 (394)
T PRK11138 305 RVYALDTRGGVELWSQSDLLHRLLTAPVLY--NG-YLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVVADDKLLI 381 (394)
T ss_pred eEEEEECCCCcEEEcccccCCCcccCCEEE--CC-EEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEEECCEEEE
Confidence 99999999998876543211 112222222 33 4567889999999999999998777542 11 1 4557888
Q ss_pred EcCCCeEEEEEC
Q 000270 635 SDDVGQLYILNT 646 (1749)
Q Consensus 635 gd~DG~I~IWdl 646 (1749)
++.+|.|+.+..
T Consensus 382 ~t~~G~l~~~~~ 393 (394)
T PRK11138 382 QARDGTVYAITR 393 (394)
T ss_pred EeCCceEEEEeC
Confidence 899999988764
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.1e-06 Score=95.49 Aligned_cols=237 Identities=16% Similarity=0.156 Sum_probs=155.0
Q ss_pred CCeEEEEECCCCceEE--Ee-cCCCCceEEEEeccCCCcc-eEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCC
Q 000270 306 DCIIRVWRLPDGLPIS--VL-RGHTAAVTAIAFSPRPGSV-YQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRN 381 (1749)
Q Consensus 306 DGtIrVWDl~tgk~l~--tL-~gHs~~VtsIaFSPdg~~~-~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~ 381 (1749)
-|.+.++++.+.+.+. .+ ..-+..+..+.|+-.+.+. ..|+-+-.+|.|.++..........+. +
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~---------~-- 113 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLR---------G-- 113 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeec---------c--
Confidence 3678888887654332 11 2234566777777543222 256777888999998765433222221 0
Q ss_pred CCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccc
Q 000270 382 MAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFS 461 (1749)
Q Consensus 382 ~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s 461 (1749)
.....-......++.|++.|..++++..+|.+.+.+...+ .....+.+++|.-..+...|+...
T Consensus 114 ---ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~-------~le~vq~wk~He~E~Wta~f~~~~------ 177 (339)
T KOG0280|consen 114 ---LSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEM-------VLEKVQTWKVHEFEAWTAKFSDKE------ 177 (339)
T ss_pred ---cchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEeccee-------eeeecccccccceeeeeeecccCC------
Confidence 0000001113568889999999999999999986655321 123345678899888888887543
Q ss_pred cccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCC
Q 000270 462 LADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR 541 (1749)
Q Consensus 462 ~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~ 541 (1749)
++.+.+|+.||.+..||++... ...| ....-|..
T Consensus 178 -------------------pnlvytGgDD~~l~~~D~R~p~----~~i~-----------------------~n~kvH~~ 211 (339)
T KOG0280|consen 178 -------------------PNLVYTGGDDGSLSCWDIRIPK----TFIW-----------------------HNSKVHTS 211 (339)
T ss_pred -------------------CceEEecCCCceEEEEEecCCc----ceee-----------------------ecceeeec
Confidence 4799999999999999998321 0111 11234777
Q ss_pred CeeEEEEcC-CCCEEEEEeCCCeEEEEECCC-CceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 000270 542 GVNMIVWSL-DNRFVLAAIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI 616 (1749)
Q Consensus 542 ~VtsVafSP-DG~~LATGs~DGtI~VWDl~t-gklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk 616 (1749)
+|.+|.-+| .+.+|+||+.|-.|++||.++ ++++..-. -.+.|+.+.++|.....|+.+..-.-.+|-++..+.
T Consensus 212 GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~ 287 (339)
T KOG0280|consen 212 GVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKV 287 (339)
T ss_pred ceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccc
Confidence 898888775 578999999999999999984 56655332 237899999999655444444555557777776654
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.3e-06 Score=99.50 Aligned_cols=291 Identities=12% Similarity=0.186 Sum_probs=166.0
Q ss_pred ccccccceEEEEccCCCCEEEEEECCCCCEEEEEeC-----------CcEEEEEECCCCeEEEEEccC--CCCeE-EEEE
Q 000270 228 TMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSD-----------DRLVKIWSMETAYCLASCRGH--EGDIT-DLAV 293 (1749)
Q Consensus 228 ~~~~~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~-----------DGtVrIWDl~Tg~~l~tL~gH--s~~Vt-sLaf 293 (1749)
|.-..+..+++|- |. .|.-+.|||..+||+|-+. ...++|||+.+|.+.+.|... ...+. -..|
T Consensus 236 WGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frW 313 (698)
T KOG2314|consen 236 WGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRW 313 (698)
T ss_pred ecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEe
Confidence 3333444444443 33 4888999999999999753 257999999999999888752 22222 3579
Q ss_pred cCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCC
Q 000270 294 SSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP 373 (1749)
Q Consensus 294 SPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~ 373 (1749)
|.|++++|--..+ .|.|++..+-.++-.-.-.-..|....|+|.+. +|| .|-..+.....++.+-.-
T Consensus 314 S~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~---llA---------Ywtpe~~~~parvtL~ev 380 (698)
T KOG2314|consen 314 SHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSN---LLA---------YWTPETNNIPARVTLMEV 380 (698)
T ss_pred ccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcc---eEE---------EEcccccCCcceEEEEec
Confidence 9999999987765 799999766433322122335677889999764 333 343333332222211000
Q ss_pred CCcccCCCCCCCCCCCCCCCceE--EEEEcCCCCEEEEe----------cCCCcEEEEeCCCCCCCCCCCCCcceeeecC
Q 000270 374 SDAVAGRNMAPSSSAGPQSHQIF--CCAFNANGTVFVTG----------SSDTLARVWNACKPNTDDSDQPNHEIDVLSG 441 (1749)
Q Consensus 374 ~~~~~g~~~~~~~s~~~h~~~Vt--~LafSPDG~~LaSG----------s~DGtVrIWDl~t~~~~~s~~~~~~i~~l~g 441 (1749)
+. .... ... .-..|. .+-|-.+|.+|++- +.-..+-|+.++.... .+. ...
T Consensus 381 Ps---~~~i---Rt~--nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI--------pve-~ve 443 (698)
T KOG2314|consen 381 PS---KREI---RTK--NLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI--------PVE-VVE 443 (698)
T ss_pred Cc---ccee---eec--cceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC--------Cce-eee
Confidence 00 0000 000 001122 24455677777653 1222345555543110 111 123
Q ss_pred CCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeC---CCcEEEEecCCCCCCccccccccccccCC
Q 000270 442 HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR---DGSAIIWIPRSRRSHPKAARWTQAYHLKV 518 (1749)
Q Consensus 442 H~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~---DGtIrIWDl~s~k~~~~~~~~~~~~~l~v 518 (1749)
-...|...+|-|.| +.+++-+. ..++.+|.+.+..
T Consensus 444 lke~vi~FaWEP~g--------------------------dkF~vi~g~~~k~tvsfY~~e~~~---------------- 481 (698)
T KOG2314|consen 444 LKESVIAFAWEPHG--------------------------DKFAVISGNTVKNTVSFYAVETNI---------------- 481 (698)
T ss_pred cchheeeeeeccCC--------------------------CeEEEEEccccccceeEEEeecCC----------------
Confidence 35577888898887 45444332 3467777665310
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEe---CCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCC
Q 000270 519 PPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI---MDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP 595 (1749)
Q Consensus 519 ~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs---~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~ 595 (1749)
.....+..+. ....+.+.|+|.|++++++. ..|.+.++|+.-..+..+-.......+.+.|.| .|
T Consensus 482 ---------~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDP-tG 549 (698)
T KOG2314|consen 482 ---------KKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDP-TG 549 (698)
T ss_pred ---------Cchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECC-CC
Confidence 0011122222 23578899999999998875 568899999875344333222223467899999 77
Q ss_pred cEEEEEeCC
Q 000270 596 RIAMSAGYD 604 (1749)
Q Consensus 596 rlLaSgs~D 604 (1749)
++++|++.-
T Consensus 550 RYvvT~ss~ 558 (698)
T KOG2314|consen 550 RYVVTSSSS 558 (698)
T ss_pred CEEEEeeeh
Confidence 888887653
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.2e-06 Score=99.47 Aligned_cols=280 Identities=13% Similarity=0.205 Sum_probs=169.8
Q ss_pred CCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCC-----ceEEEecCCC------------CceEEEEeccCCCcceEEEe
Q 000270 285 EGDITDLAVSSNNALVASASNDCIIRVWRLPDG-----LPISVLRGHT------------AAVTAIAFSPRPGSVYQLLS 347 (1749)
Q Consensus 285 s~~VtsLafSPDg~lLASGS~DGtIrVWDl~tg-----k~l~tL~gHs------------~~VtsIaFSPdg~~~~~LaS 347 (1749)
...|+++.|...|.+|++|...|.|.++.-... +....+++|. ..|..|.|..+++.. .++.
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~-hFLl 104 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRN-HFLL 104 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcc-eEEE
Confidence 456899999999999999999999999975432 2233355554 357889999887655 4555
Q ss_pred ecCCCcEEEEEcCCCcccc--------eeecCCCCCccc------CCC--------CCC-CCCCCCCCCceEEEEEcCCC
Q 000270 348 SSDDGTCRIWDARYSQFSP--------RIYIPRPSDAVA------GRN--------MAP-SSSAGPQSHQIFCCAFNANG 404 (1749)
Q Consensus 348 gS~DGtIrIWDl~tg~~l~--------~l~~~~~~~~~~------g~~--------~~~-~~s~~~h~~~Vt~LafSPDG 404 (1749)
.+.|.+|++|.+....... .+..+....... ++. ..+ ......|...|.+++|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 6788999999986542110 000000000000 000 000 01124567778999999999
Q ss_pred CEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCC-----CCCeEEEEEcCCCcccccccccCCCCCCCCccccccc
Q 000270 405 TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH-----ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWF 479 (1749)
Q Consensus 405 ~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH-----~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~ 479 (1749)
..++++ .|-.|.+|++.... + ...+.-...| ..-|++..|+|..
T Consensus 185 et~lSa-DdLrINLWnl~i~D-----~-sFnIVDiKP~nmeeLteVItSaeFhp~~------------------------ 233 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIID-----G-SFNIVDIKPHNMEELTEVITSAEFHPEM------------------------ 233 (460)
T ss_pred heeeec-cceeeeeccccccC-----C-ceEEEeccCccHHHHHHHHhhcccCHhH------------------------
Confidence 888876 57789999985321 1 1112222333 2345666666643
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEe
Q 000270 480 CHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI 559 (1749)
Q Consensus 480 ~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs 559 (1749)
...+...+..|.|++-|++...... ....+......+....-+......|..+.|+++|++|++-.
T Consensus 234 -cn~fmYSsSkG~Ikl~DlRq~alcd-------------n~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd 299 (460)
T COG5170 234 -CNVFMYSSSKGEIKLNDLRQSALCD-------------NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD 299 (460)
T ss_pred -cceEEEecCCCcEEehhhhhhhhcc-------------CchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec
Confidence 2578888999999999998532110 00001111111112222333445688999999999999876
Q ss_pred CCCeEEEEECCCC-ceEEEecCCC------------CCe---EEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 000270 560 MDCRICVWNAADG-SLVHSLTGHT------------EST---YVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1749)
Q Consensus 560 ~DGtI~VWDl~tg-klv~tL~gH~------------~~V---tsLafSPdd~rlLaSgs~DGtIrVWDl 612 (1749)
. -+|+|||+... .++.++.-|. +.| ..+.|+. +...+++|+.....-|+-+
T Consensus 300 y-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSg-d~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 300 Y-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSG-DDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred c-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecC-Ccccccccccccceeeecc
Confidence 5 68999999754 4666664442 233 3467777 4455667887777776654
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.3e-06 Score=97.84 Aligned_cols=245 Identities=16% Similarity=0.220 Sum_probs=166.0
Q ss_pred eEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEE-cCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEE
Q 000270 319 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD-ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFC 397 (1749)
Q Consensus 319 ~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWD-l~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~ 397 (1749)
.+..+.||...|++...-|... -+++.+.|.+++||- .+.++.-+.+.. .-...+++
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~---gv~~~s~drtvrv~lkrds~q~wpsI~~-------------------~mP~~~~~ 73 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEE---GVISVSEDRTVRVWLKRDSGQYWPSIYH-------------------YMPSPCSA 73 (404)
T ss_pred hhhhhcCchhhhhhheeccCCC---CeEEccccceeeeEEeccccccCchhhh-------------------hCCCCceE
Confidence 4556788999999888888765 689999999999994 344444443321 12446889
Q ss_pred EEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCccccc
Q 000270 398 CAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNS 477 (1749)
Q Consensus 398 LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s 477 (1749)
+++.+....|++|-..|++.-+.+.. .......+.....|...|..+.|+-..
T Consensus 74 ~~y~~e~~~L~vg~~ngtvtefs~se-----dfnkm~~~r~~~~h~~~v~~~if~~~~---------------------- 126 (404)
T KOG1409|consen 74 MEYVSESRRLYVGQDNGTVTEFALSE-----DFNKMTFLKDYLAHQARVSAIVFSLTH---------------------- 126 (404)
T ss_pred eeeeccceEEEEEEecceEEEEEhhh-----hhhhcchhhhhhhhhcceeeEEecCCc----------------------
Confidence 99999999999999999999887742 112233455667899999999887543
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEE
Q 000270 478 WFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 557 (1749)
Q Consensus 478 ~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LAT 557 (1749)
..+++.+.|..+.---.+.+...+... +. ...+++.+.-. +...
T Consensus 127 ----e~V~s~~~dk~~~~hc~e~~~~lg~Y~-------~~-----------------------~~~t~~~~d~~--~~fv 170 (404)
T KOG1409|consen 127 ----EWVLSTGKDKQFAWHCTESGNRLGGYN-------FE-----------------------TPASALQFDAL--YAFV 170 (404)
T ss_pred ----eeEEEeccccceEEEeeccCCcccceE-------ee-----------------------ccCCCCceeeE--EEEe
Confidence 688999988877544333332211100 00 00011111111 4445
Q ss_pred EeCCCeEEEEEC--CCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeee---------c
Q 000270 558 AIMDCRICVWNA--ADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISR---------F 626 (1749)
Q Consensus 558 Gs~DGtI~VWDl--~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~~---------~ 626 (1749)
|...|.|.+-.+ ..-.++.++.+|.+.|++++|.+ ..++|++|..|..|.+||+--.+-+....-++ .
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~ 249 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA 249 (404)
T ss_pred cccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence 555555544333 45567889999999999999999 78899999999999999996544333222111 1
Q ss_pred cCCCEEEEEcCCCeEEEEECCCC
Q 000270 627 RDGASIILSDDVGQLYILNTGQG 649 (1749)
Q Consensus 627 sDG~~LAsgd~DG~I~IWdl~tG 649 (1749)
+--+.|.+++.||.|-+|+....
T Consensus 250 ~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 250 QHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhheeeeeccCCCeEEEEeccce
Confidence 26678999999999999998543
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.8e-07 Score=105.56 Aligned_cols=88 Identities=22% Similarity=0.275 Sum_probs=76.9
Q ss_pred ccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEe-cCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 000270 534 QRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL-TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1749)
Q Consensus 534 ~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL-~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl 612 (1749)
..+.+|-.-++.|+|+||+++|+++..|..|+|-....--.+..| -||+.-|..++.-+ ++.|+|+|.|++|++||+
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLRLWDI 222 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCCCcEEEEec
Confidence 345678889999999999999999999999999888766666665 48999999999976 566899999999999999
Q ss_pred CCCceEEEEee
Q 000270 613 WEGIPIRIYEI 623 (1749)
Q Consensus 613 ~tGk~l~tl~~ 623 (1749)
.+|+++.++..
T Consensus 223 ~sgk~L~t~dl 233 (390)
T KOG3914|consen 223 TSGKLLDTCDL 233 (390)
T ss_pred ccCCcccccch
Confidence 99999988764
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.9e-05 Score=105.02 Aligned_cols=261 Identities=16% Similarity=0.123 Sum_probs=146.9
Q ss_pred EEEEEcC-CCcEEEEEeCCCeEEEEECCCCceEEEecC--C------------CCceEEEEeccCCCcceEE-EeecCCC
Q 000270 289 TDLAVSS-NNALVASASNDCIIRVWRLPDGLPISVLRG--H------------TAAVTAIAFSPRPGSVYQL-LSSSDDG 352 (1749)
Q Consensus 289 tsLafSP-Dg~lLASGS~DGtIrVWDl~tgk~l~tL~g--H------------s~~VtsIaFSPdg~~~~~L-aSgS~DG 352 (1749)
..+++++ ++.++++-+.++.|++||.. |..+..+.+ . -....+|++.++++ .| ++-...+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn---~LYVaDt~n~ 646 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKN---LLYVADTENH 646 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCC---EEEEEeCCCc
Confidence 3678887 46677777888999999975 554444432 1 12357889998765 44 4444567
Q ss_pred cEEEEEcCCCcccceeecCCCCCcccCCCCCCCCC-CCCCCCceEEEEEcC-CCCEEEEecCCCcEEEEeCCCCCCCCCC
Q 000270 353 TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSS-AGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSD 430 (1749)
Q Consensus 353 tIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s-~~~h~~~Vt~LafSP-DG~~LaSGs~DGtVrIWDl~t~~~~~s~ 430 (1749)
.|+++|+.++. +.++...... +........ ....-.....++|+| ++.++++.+.++.|++|+..++.
T Consensus 647 ~Ir~id~~~~~-V~tlag~G~~----g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~----- 716 (1057)
T PLN02919 647 ALREIDFVNET-VRTLAGNGTK----GSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV----- 716 (1057)
T ss_pred eEEEEecCCCE-EEEEeccCcc----cCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe-----
Confidence 89999987654 2222110000 000000000 000012345788888 56666777778888888874311
Q ss_pred CCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCcccccc
Q 000270 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1749)
Q Consensus 431 ~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~ 510 (1749)
+. .|.+++ .....+-..
T Consensus 717 -----v~------------~~~G~G------------------------------------~~~~~~g~~---------- 733 (1057)
T PLN02919 717 -----TR------------VFSGDG------------------------------------YERNLNGSS---------- 733 (1057)
T ss_pred -----EE------------EEecCC------------------------------------ccccCCCCc----------
Confidence 00 111111 000000000
Q ss_pred ccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEE-EEeCCCeEEEEECCCCceEEEecC---------
Q 000270 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVL-AAIMDCRICVWNAADGSLVHSLTG--------- 580 (1749)
Q Consensus 511 ~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LA-TGs~DGtI~VWDl~tgklv~tL~g--------- 580 (1749)
. ....-...+.|+|+|+|.+|+ +-+.++.|++||+.++.......+
T Consensus 734 --------------------~----~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~ 789 (1057)
T PLN02919 734 --------------------G----TSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLF 789 (1057)
T ss_pred --------------------c----ccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccc
Confidence 0 000112356789999988554 445678899999887653221100
Q ss_pred ----C--------CCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEeee---------------------ecc
Q 000270 581 ----H--------TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS---------------------RFR 627 (1749)
Q Consensus 581 ----H--------~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~---------------------~~s 627 (1749)
+ -.....++|++ ++.++++-..+++|++||..++........+ ..+
T Consensus 790 ~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~ 868 (1057)
T PLN02919 790 KFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE 868 (1057)
T ss_pred cccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC
Confidence 0 11236889998 5678888889999999999888765433211 011
Q ss_pred CCCEEEEEcCCCeEEEEECCCCcc
Q 000270 628 DGASIILSDDVGQLYILNTGQGES 651 (1749)
Q Consensus 628 DG~~LAsgd~DG~I~IWdl~tGe~ 651 (1749)
+|+++++-+.++.|++|++.+++.
T Consensus 869 dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 869 NGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCEEEEECCCCEEEEEECCCCcc
Confidence 677666666777888888766543
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=4e-07 Score=108.79 Aligned_cols=245 Identities=18% Similarity=0.289 Sum_probs=159.4
Q ss_pred EEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCC-------CceEEEecCCCCceEEEEeccCCCcceEEEeecC
Q 000270 278 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPD-------GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD 350 (1749)
Q Consensus 278 l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~t-------gk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~ 350 (1749)
+..+.||...|..++--.+.+-+++++.|.+|++|.++. ..|..++..|..+|..+.|..+.. ++ ++.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr---~i--~Sc 802 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR---SI--ASC 802 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc---ee--eec
Confidence 456789999999998877888899999999999999853 246778889999999999999864 34 456
Q ss_pred CCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEe-cCCCcEEEEeCCCCCCCCC
Q 000270 351 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG-SSDTLARVWNACKPNTDDS 429 (1749)
Q Consensus 351 DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSG-s~DGtVrIWDl~t~~~~~s 429 (1749)
||.|.+||.-.++.+..+... ...+..+.|.|+.- -+...+++| +...+|+++|.+
T Consensus 803 D~giHlWDPFigr~Laq~~da---------------pk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaR------- 859 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMEDA---------------PKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDAR------- 859 (1034)
T ss_pred cCcceeecccccchhHhhhcC---------------cccCCCceeEeccc-Ccchheeeeccchhhheeeecc-------
Confidence 888999998766554433110 00111222333321 122223322 445555555553
Q ss_pred CCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccc
Q 000270 430 DQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR 509 (1749)
Q Consensus 430 ~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~ 509 (1749)
...
T Consensus 860 ----------------------------------------------------------------------sce------- 862 (1034)
T KOG4190|consen 860 ----------------------------------------------------------------------SCE------- 862 (1034)
T ss_pred ----------------------------------------------------------------------ccc-------
Confidence 211
Q ss_pred cccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEE
Q 000270 510 WTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLD 589 (1749)
Q Consensus 510 ~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLa 589 (1749)
|...+.+. ...+...-+.+++..+.|+++|+|-..|.|.+.|.++|+.+..+..-......++
T Consensus 863 ~~~E~kVc-----------------na~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla 925 (1034)
T KOG4190|consen 863 WTCELKVC-----------------NAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA 925 (1034)
T ss_pred ceeeEEec-----------------cCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc
Confidence 11111100 0011234578899999999999999999999999999999988876655555555
Q ss_pred EcCCCCcEEEEEeCCCcEEE-EeCCCCceEEEEeee----ec--cCCCEEEEEcCCCeEEEEEC
Q 000270 590 VHPFNPRIAMSAGYDGKTIV-WDIWEGIPIRIYEIS----RF--RDGASIILSDDVGQLYILNT 646 (1749)
Q Consensus 590 fSPdd~rlLaSgs~DGtIrV-WDl~tGk~l~tl~~~----~~--sDG~~LAsgd~DG~I~IWdl 646 (1749)
- | ..+.|+....|.++.| |-.-+|......... +| +-|..|++......+.+|.-
T Consensus 926 a-p-sdq~L~~saldHslaVnWhaldgimh~q~kpppepahflqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 926 A-P-SDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFLQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred C-c-hhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhhhccCceeEEeccCcEEEEEec
Confidence 3 4 3456777777888888 987777655444321 11 15667777766666777753
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.6e-06 Score=101.18 Aligned_cols=288 Identities=16% Similarity=0.146 Sum_probs=184.4
Q ss_pred CCCCEEEEEECCCCCEEEEEeCCcEEEEEECCC--C-eEEEEEccCCCCeEEEEEcCCCcEEEEEeC-CCeEEEEECCCC
Q 000270 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET--A-YCLASCRGHEGDITDLAVSSNNALVASASN-DCIIRVWRLPDG 317 (1749)
Q Consensus 242 H~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~T--g-~~l~tL~gHs~~VtsLafSPDg~lLASGS~-DGtIrVWDl~tg 317 (1749)
|++.|+-+... -.+++++++.||.++.|--.. | +.+..+..|-+.|.+++.+.++.+++|++. |..++++|+.+-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 77777776554 456899999999999998643 2 445667889999999999999999999888 999999999875
Q ss_pred ceEEEec--CCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCce
Q 000270 318 LPISVLR--GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395 (1749)
Q Consensus 318 k~l~tL~--gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~V 395 (1749)
..+.-++ .-.+.+..+ .++........++.-.+|.|.|+|-....+...+. ..-|..+|
T Consensus 87 DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~f------------------kklH~sPV 147 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYF------------------KKLHFSPV 147 (558)
T ss_pred chhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCcccee------------------cccccCce
Confidence 4442222 222333222 22221111123344567889999876554332221 24578889
Q ss_pred EEEEEcCCCCEEEEecCCCcEEEEeCCCC----C--CCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCC
Q 000270 396 FCCAFNANGTVFVTGSSDTLARVWNACKP----N--TDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469 (1749)
Q Consensus 396 t~LafSPDG~~LaSGs~DGtVrIWDl~t~----~--~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~ 469 (1749)
.++.+++-+..+++....|.|..|..... . ..-.......+..+........++.|+|++
T Consensus 148 ~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-------------- 213 (558)
T KOG0882|consen 148 KKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG-------------- 213 (558)
T ss_pred EEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc--------------
Confidence 99999999999999999999999998521 0 000001111122233344566788888887
Q ss_pred CCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCC---C---CCcccccCCC-CC
Q 000270 470 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR---G---GPRQRILPTP-RG 542 (1749)
Q Consensus 470 ~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~---g---~~i~~l~~h~-~~ 542 (1749)
..+.+-+.|..|+++++.+++....+..-....+..... ...... + .....+..|. ..
T Consensus 214 ------------~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks---~y~l~~VelgRRmaverelek~~~~~ 278 (558)
T KOG0882|consen 214 ------------AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKS---PYGLMHVELGRRMAVERELEKHGSTV 278 (558)
T ss_pred ------------CcccccCcccEEEEEEeccchhhhhhhccchhhhhcccc---ccccceeehhhhhhHHhhHhhhcCcc
Confidence 678888899999999999887543332211111110000 000000 0 0011122222 23
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEec
Q 000270 543 VNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT 579 (1749)
Q Consensus 543 VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~ 579 (1749)
-+.++|...|++|+-|+.=| |+|.++.++.+++.+.
T Consensus 279 ~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 279 GTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred cceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 46788999999999988755 8999999998887663
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00014 Score=85.87 Aligned_cols=278 Identities=13% Similarity=0.068 Sum_probs=165.4
Q ss_pred ccCCCCEEEEEECCCCCEEEEEeC---CcEEEEEECCC--CeEEE--EEccCCCCeEEEEEcCCCcEEEEEeC-CCeEEE
Q 000270 240 RGHRNAVYCAIFDRSGRYVITGSD---DRLVKIWSMET--AYCLA--SCRGHEGDITDLAVSSNNALVASASN-DCIIRV 311 (1749)
Q Consensus 240 ~GH~~~Vt~VaFSPDG~~LATGS~---DGtVrIWDl~T--g~~l~--tL~gHs~~VtsLafSPDg~lLASGS~-DGtIrV 311 (1749)
-.+.+.++-|+|+|++++|.++-. +|.|-.|.++. |++-. ....-..+-+.++++++|++|+++.. -|.|.|
T Consensus 36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v 115 (346)
T COG2706 36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSV 115 (346)
T ss_pred ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEE
Confidence 345677888999999999988855 46777777654 54432 22222333488999999999998876 489999
Q ss_pred EECCC-CceEE--EecCCCCc----------eEEEEeccCCCcceEEEeec-CCCcEEEEEcCCCcccceeecCCCCCcc
Q 000270 312 WRLPD-GLPIS--VLRGHTAA----------VTAIAFSPRPGSVYQLLSSS-DDGTCRIWDARYSQFSPRIYIPRPSDAV 377 (1749)
Q Consensus 312 WDl~t-gk~l~--tL~gHs~~----------VtsIaFSPdg~~~~~LaSgS-~DGtIrIWDl~tg~~l~~l~~~~~~~~~ 377 (1749)
+-+.. |.+.. .+..|.+. +....|.|+++ +|++.+ .--.|.+|++..|.+......
T Consensus 116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~---~l~v~DLG~Dri~~y~~~dg~L~~~~~~------- 185 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR---YLVVPDLGTDRIFLYDLDDGKLTPADPA------- 185 (346)
T ss_pred EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC---EEEEeecCCceEEEEEcccCcccccccc-------
Confidence 99865 43222 12235555 88999999987 555543 223589999987765433211
Q ss_pred cCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecC-CCcEEEEeCCCCCCCCCCCCCcceeeecC---CCCCeEEEEEcC
Q 000270 378 AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDVLSG---HENDVNYVQFSG 453 (1749)
Q Consensus 378 ~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~-DGtVrIWDl~t~~~~~s~~~~~~i~~l~g---H~~~V~sVafSp 453 (1749)
..........|+|+|+|++..+.+. +++|-+|...... ........+..+.. -....-.|..++
T Consensus 186 ----------~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~--g~~~~lQ~i~tlP~dF~g~~~~aaIhis~ 253 (346)
T COG2706 186 ----------EVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAV--GKFEELQTIDTLPEDFTGTNWAAAIHISP 253 (346)
T ss_pred ----------ccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCC--ceEEEeeeeccCccccCCCCceeEEEECC
Confidence 0123455778999999998776654 8899999986521 00011111111111 123455677777
Q ss_pred CCcccccccccCCCCCCCCcccccccCCCEEEEEeC-CCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCC
Q 000270 454 CAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR-DGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGP 532 (1749)
Q Consensus 454 dg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~-DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~ 532 (1749)
+| ++|.++.+ ...|.+|.+....... ..
T Consensus 254 dG--------------------------rFLYasNRg~dsI~~f~V~~~~g~L-------------------------~~ 282 (346)
T COG2706 254 DG--------------------------RFLYASNRGHDSIAVFSVDPDGGKL-------------------------EL 282 (346)
T ss_pred CC--------------------------CEEEEecCCCCeEEEEEEcCCCCEE-------------------------EE
Confidence 76 45554432 2355555544211000 00
Q ss_pred cccccCCCCCeeEEEEcCCCCEEEEEeCCC-eEEEEEC--CCCceEEEec-CCCCCeEEEEE
Q 000270 533 RQRILPTPRGVNMIVWSLDNRFVLAAIMDC-RICVWNA--ADGSLVHSLT-GHTESTYVLDV 590 (1749)
Q Consensus 533 i~~l~~h~~~VtsVafSPDG~~LATGs~DG-tI~VWDl--~tgklv~tL~-gH~~~VtsLaf 590 (1749)
......+......+.|++.|++|+++..++ .|.||.. .+|++..... .......||.|
T Consensus 283 ~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f 344 (346)
T COG2706 283 VGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKF 344 (346)
T ss_pred EEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEE
Confidence 011111222356788999999999998654 5777755 4565544333 22333445554
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.7e-05 Score=91.06 Aligned_cols=122 Identities=14% Similarity=0.213 Sum_probs=104.1
Q ss_pred ccCCCCEEEEEECCCCCEEEEEeCCc-EEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCc
Q 000270 240 RGHRNAVYCAIFDRSGRYVITGSDDR-LVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL 318 (1749)
Q Consensus 240 ~GH~~~Vt~VaFSPDG~~LATGS~DG-tVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk 318 (1749)
-+|.+.|.-..+.-++.-++.|..|| .|-|+|..+++ ++.+...-+.|.++..+++|++++.+.....|.+.|+.+|.
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 37888899999999999999999999 99999999876 45556677899999999999999999888999999999998
Q ss_pred eEEEecCCCCceEEEEeccCCCcceEEEeecCCC----cEEEEEcCCCccc
Q 000270 319 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG----TCRIWDARYSQFS 365 (1749)
Q Consensus 319 ~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DG----tIrIWDl~tg~~l 365 (1749)
....-+...+-|+.++|+|++. ++|-+--+| .|+++|+.+++..
T Consensus 435 v~~idkS~~~lItdf~~~~nsr---~iAYafP~gy~tq~Iklydm~~~Kiy 482 (668)
T COG4946 435 VRLIDKSEYGLITDFDWHPNSR---WIAYAFPEGYYTQSIKLYDMDGGKIY 482 (668)
T ss_pred eeEecccccceeEEEEEcCCce---eEEEecCcceeeeeEEEEecCCCeEE
Confidence 7666666778999999999987 788776665 5899999887643
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00054 Score=81.03 Aligned_cols=287 Identities=11% Similarity=0.137 Sum_probs=165.6
Q ss_pred CcEEEEEECCCC--eE-EEEEccCCCCeEEEEEcCCCcEEEEEeC---CCeEEEEECCC--CceEE--EecCCCCceEEE
Q 000270 264 DRLVKIWSMETA--YC-LASCRGHEGDITDLAVSSNNALVASASN---DCIIRVWRLPD--GLPIS--VLRGHTAAVTAI 333 (1749)
Q Consensus 264 DGtVrIWDl~Tg--~~-l~tL~gHs~~VtsLafSPDg~lLASGS~---DGtIrVWDl~t--gk~l~--tL~gHs~~VtsI 333 (1749)
+.-|.+|++.+. ++ ...+-.+.+.++-|+|+|++++|.++-. +|.|..+.+.. |+... .......+-+.|
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 456999998732 21 1122356788999999999998888755 47787777754 54322 111222334889
Q ss_pred EeccCCCcceEEEee-cCCCcEEEEEcCC-CcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEec
Q 000270 334 AFSPRPGSVYQLLSS-SDDGTCRIWDARY-SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS 411 (1749)
Q Consensus 334 aFSPdg~~~~~LaSg-S~DGtIrIWDl~t-g~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs 411 (1749)
++++++. +|+++ ..-|.|.++-+.. |.....+...... +. .+. ......-+.+..|.|++++|++.+
T Consensus 95 svd~~g~---~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~----g~--~p~--~rQ~~~h~H~a~~tP~~~~l~v~D 163 (346)
T COG2706 95 SVDEDGR---FVFVANYHSGSVSVYPLQADGSLQPVVQVVKHT----GS--GPH--ERQESPHVHSANFTPDGRYLVVPD 163 (346)
T ss_pred EECCCCC---EEEEEEccCceEEEEEcccCCccccceeeeecC----CC--CCC--ccccCCccceeeeCCCCCEEEEee
Confidence 9999987 55554 4568899998865 4433222110000 00 000 111122267889999999988875
Q ss_pred C-CCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEE-EEEeC
Q 000270 412 S-DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI-VTCSR 489 (1749)
Q Consensus 412 ~-DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~L-aSgS~ 489 (1749)
- --.|.+|++..+.... ..... + .....-..|.|+|++ ++. +.+--
T Consensus 164 LG~Dri~~y~~~dg~L~~----~~~~~-v-~~G~GPRHi~FHpn~--------------------------k~aY~v~EL 211 (346)
T COG2706 164 LGTDRIFLYDLDDGKLTP----ADPAE-V-KPGAGPRHIVFHPNG--------------------------KYAYLVNEL 211 (346)
T ss_pred cCCceEEEEEcccCcccc----ccccc-c-CCCCCcceEEEcCCC--------------------------cEEEEEecc
Confidence 3 2368999997544321 11111 1 344567889999987 443 44557
Q ss_pred CCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeC-CCeEEEEE
Q 000270 490 DGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM-DCRICVWN 568 (1749)
Q Consensus 490 DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~-DGtI~VWD 568 (1749)
+++|.+|.+.... +... ....+. .+..-.....+...|.+++||++|.++.. ...|.+|.
T Consensus 212 ~stV~v~~y~~~~--g~~~---~lQ~i~--------------tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~ 272 (346)
T COG2706 212 NSTVDVLEYNPAV--GKFE---ELQTID--------------TLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFS 272 (346)
T ss_pred CCEEEEEEEcCCC--ceEE---Eeeeec--------------cCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence 8999999887631 1110 000000 00000123346788999999999998753 23577776
Q ss_pred CCC--CceE--EEecCCCCCeEEEEEcCCCCcEEEEEeC-CCcEEEEeCC
Q 000270 569 AAD--GSLV--HSLTGHTESTYVLDVHPFNPRIAMSAGY-DGKTIVWDIW 613 (1749)
Q Consensus 569 l~t--gklv--~tL~gH~~~VtsLafSPdd~rlLaSgs~-DGtIrVWDl~ 613 (1749)
+.. |++. .....+...-..+.|++ ++++|++++. +..|.++.+.
T Consensus 273 V~~~~g~L~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 273 VDPDGGKLELVGITPTEGQFPRDFNINP-SGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred EcCCCCEEEEEEEeccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEc
Confidence 643 3322 12223344456778888 5555555554 4567777553
|
|
| >KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2e-07 Score=121.78 Aligned_cols=106 Identities=12% Similarity=0.329 Sum_probs=93.2
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 000270 1629 QPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVML 1708 (1749)
Q Consensus 1629 ~p~idpe~r~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~ 1708 (1749)
.|.++.+.+-.. -+++.+...+...+.+|+|..+++...+|+||.+|+.||||+||.+.+..+-|.+.++|..||++|+
T Consensus 1373 nplld~~d~v~~-~~~d~~vs~~~~ipes~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~ 1451 (1563)
T KOG0008|consen 1373 NPLLDDDDQVAF-FILDNIVSQMKEIPESWPFHEPVNKKRVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIY 1451 (1563)
T ss_pred CcccCccchhhH-hhhhhHHHHHHhcchhcccccccchhhchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhc
Confidence 355555555555 7778888888889999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhcCCCCHHHHHHHHHHHHHHHH
Q 000270 1709 SNAESYFGRNTDLSTKIKRLSDLVTRT 1735 (1749)
Q Consensus 1709 ~N~~~fN~~~s~~~~~a~~l~~~~~~~ 1735 (1749)
.||..||++++.|.++|+.+-++-+..
T Consensus 1452 ~n~~~~ng~e~~y~~k~~k~~ev~~~~ 1478 (1563)
T KOG0008|consen 1452 VNSVEYNGAESAYTKKARKIGEVGLAN 1478 (1563)
T ss_pred ccceeecCccccccHHHHHHHHHHHHH
Confidence 999999999999999998876654433
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.5e-05 Score=88.08 Aligned_cols=199 Identities=15% Similarity=0.130 Sum_probs=135.8
Q ss_pred CCEEEEEeCCcEEEEEECCCCe-EEEEEccCCCCeEEEEEcCC-CcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEE
Q 000270 255 GRYVITGSDDRLVKIWSMETAY-CLASCRGHEGDITDLAVSSN-NALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTA 332 (1749)
Q Consensus 255 G~~LATGS~DGtVrIWDl~Tg~-~l~tL~gHs~~VtsLafSPD-g~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~Vts 332 (1749)
-.+||.|+.-|...+|...+.. .++.+..|...|+-+.=..+ ..-+..++.|.++++.++..+..-..+.-..-.+.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 3589999999999999998654 34444555554433221112 224566788889999888655333222111123889
Q ss_pred EEeccCCCcceEEEeecCCCcEEEEEcCCCc-ccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEec
Q 000270 333 IAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ-FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS 411 (1749)
Q Consensus 333 IaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~-~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs 411 (1749)
+++++++. ++++.+....|.+|.+.... .+..+.. ......-.+..|+.....||++.
T Consensus 164 ~~~snd~~---~~~~Vgds~~Vf~y~id~~sey~~~~~~------------------a~t~D~gF~~S~s~~~~~FAv~~ 222 (344)
T KOG4532|consen 164 LHYSNDPS---WGSSVGDSRRVFRYAIDDESEYIENIYE------------------APTSDHGFYNSFSENDLQFAVVF 222 (344)
T ss_pred eEEcCCCc---eEEEecCCCcceEEEeCCccceeeeeEe------------------cccCCCceeeeeccCcceEEEEe
Confidence 99999997 88999999999999887532 2222211 22344457889999999999999
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCC
Q 000270 412 SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG 491 (1749)
Q Consensus 412 ~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG 491 (1749)
.||++.|||++...... .....+...|.+.+..+.|++.+.. ++|+..-.-+
T Consensus 223 Qdg~~~I~DVR~~~tpm----~~~sstrp~hnGa~R~c~Fsl~g~l------------------------DLLf~sEhfs 274 (344)
T KOG4532|consen 223 QDGTCAIYDVRNMATPM----AEISSTRPHHNGAFRVCRFSLYGLL------------------------DLLFISEHFS 274 (344)
T ss_pred cCCcEEEEEecccccch----hhhcccCCCCCCceEEEEecCCCcc------------------------eEEEEecCcc
Confidence 99999999997643211 1112233458899999999986621 6777777778
Q ss_pred cEEEEecCCCC
Q 000270 492 SAIIWIPRSRR 502 (1749)
Q Consensus 492 tIrIWDl~s~k 502 (1749)
.+.+-|+++..
T Consensus 275 ~~hv~D~R~~~ 285 (344)
T KOG4532|consen 275 RVHVVDTRNYV 285 (344)
T ss_pred eEEEEEcccCc
Confidence 89999998755
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=8.9e-05 Score=83.78 Aligned_cols=262 Identities=10% Similarity=-0.007 Sum_probs=160.9
Q ss_pred CcEEEEEECCCCe--EEEEEccCCCCeEEEEEcC-----CCcEEEEEeCCCeEEEEECCCCce-EEEecCCCCceEEEEe
Q 000270 264 DRLVKIWSMETAY--CLASCRGHEGDITDLAVSS-----NNALVASASNDCIIRVWRLPDGLP-ISVLRGHTAAVTAIAF 335 (1749)
Q Consensus 264 DGtVrIWDl~Tg~--~l~tL~gHs~~VtsLafSP-----Dg~lLASGS~DGtIrVWDl~tgk~-l~tL~gHs~~VtsIaF 335 (1749)
...|-+|++-+.. .+... +.|.|.| .-.+||.|+.-|...+|...+.+. +.....|...|+-+.=
T Consensus 51 t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r 123 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR 123 (344)
T ss_pred eeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence 3457777765433 22222 3455555 344899999999999999886543 3333444444433222
Q ss_pred ccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCc
Q 000270 336 SPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTL 415 (1749)
Q Consensus 336 SPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGt 415 (1749)
.-+.. ..+..++.|.++++.++..+.....+.. ..-.+.++++++|++++++.+....
T Consensus 124 ~cd~~--~~~~i~sndht~k~~~~~~~s~~~~~h~--------------------~~~~~ns~~~snd~~~~~~Vgds~~ 181 (344)
T KOG4532|consen 124 YCDLK--FPLNIASNDHTGKTMVVSGDSNKFAVHN--------------------QNLTQNSLHYSNDPSWGSSVGDSRR 181 (344)
T ss_pred hcccc--cceeeccCCcceeEEEEecCcccceeec--------------------cccceeeeEEcCCCceEEEecCCCc
Confidence 22222 1467788899999998876543332211 1122789999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCCCccee-eecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEE
Q 000270 416 ARVWNACKPNTDDSDQPNHEID-VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAI 494 (1749)
Q Consensus 416 VrIWDl~t~~~~~s~~~~~~i~-~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIr 494 (1749)
|..|.+.... ...+. ....-++.-.+..|+... ..+|++..||++.
T Consensus 182 Vf~y~id~~s-------ey~~~~~~a~t~D~gF~~S~s~~~--------------------------~~FAv~~Qdg~~~ 228 (344)
T KOG4532|consen 182 VFRYAIDDES-------EYIENIYEAPTSDHGFYNSFSEND--------------------------LQFAVVFQDGTCA 228 (344)
T ss_pred ceEEEeCCcc-------ceeeeeEecccCCCceeeeeccCc--------------------------ceEEEEecCCcEE
Confidence 9999985421 11222 233344455667777654 5899999999999
Q ss_pred EEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCC--EEEEEeCCCeEEEEECCCC
Q 000270 495 IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR--FVLAAIMDCRICVWNAADG 572 (1749)
Q Consensus 495 IWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~--~LATGs~DGtI~VWDl~tg 572 (1749)
|||++..... + ......-..|.+.+..+.|++.|. +|+..-.-+.+.|.|++++
T Consensus 229 I~DVR~~~tp------------------m------~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 229 IYDVRNMATP------------------M------AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred EEEecccccc------------------h------hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence 9999863210 0 000111233778899999998763 5555656688999999998
Q ss_pred ceEEEec-------CCC-CCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 000270 573 SLVHSLT-------GHT-ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1749)
Q Consensus 573 klv~tL~-------gH~-~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~ 613 (1749)
.-.+.+. .|. ..|+.-.|+..+.... +...+ .+.-|++.
T Consensus 285 ~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~-v~~e~-~~ae~ni~ 331 (344)
T KOG4532|consen 285 VNHQVIVIPDDVERKHNTQHIFGTNFNNENESND-VKNEL-QGAEYNIL 331 (344)
T ss_pred ceeeEEecCccccccccccccccccccCCCcccc-cccch-hhheeecc
Confidence 7655432 232 3377777776444333 23322 34455553
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.1e-06 Score=106.32 Aligned_cols=228 Identities=20% Similarity=0.288 Sum_probs=150.2
Q ss_pred eEEEEccCCCCEEEEEECCCC-CEEEEEeCCcEEEEEECCCC-eEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEE
Q 000270 235 NIKRVRGHRNAVYCAIFDRSG-RYVITGSDDRLVKIWSMETA-YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1749)
Q Consensus 235 ~i~tL~GH~~~Vt~VaFSPDG-~~LATGS~DGtVrIWDl~Tg-~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVW 312 (1749)
.-..|.||..+|+.+.|.|.. ..|||++.|-.|..||+.+. ..+..+..-......++|+.-...+.+.+....|+||
T Consensus 106 Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vw 185 (1081)
T KOG0309|consen 106 IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVW 185 (1081)
T ss_pred eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEE
Confidence 345688999999999999965 58999999999999999865 3455555555667889999744444445566789999
Q ss_pred ECCCC-ceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCC
Q 000270 313 RLPDG-LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQ 391 (1749)
Q Consensus 313 Dl~tg-k~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h 391 (1749)
|+..| .++..+++|...|+.+.|..--. ..+.+.+.||+|++||...........+ ..
T Consensus 186 d~r~gs~pl~s~K~~vs~vn~~~fnr~~~--s~~~s~~~d~tvkfw~y~kSt~e~~~~v-------------------tt 244 (1081)
T KOG0309|consen 186 DLRKGSTPLCSLKGHVSSVNSIDFNRFKY--SEIMSSSNDGTVKFWDYSKSTTESKRTV-------------------TT 244 (1081)
T ss_pred eccCCCcceEEecccceeeehHHHhhhhh--hhhcccCCCCceeeecccccccccceec-------------------cc
Confidence 99866 68889999999999999986532 2688999999999999876543332221 12
Q ss_pred CCceEEEEEcCCCCEEEE--ecCCCcEEEEeCCCCCCC-CCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCC
Q 000270 392 SHQIFCCAFNANGTVFVT--GSSDTLARVWNACKPNTD-DSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 468 (1749)
Q Consensus 392 ~~~Vt~LafSPDG~~LaS--Gs~DGtVrIWDl~t~~~~-~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~ 468 (1749)
...|+--.|.|-|.-.++ --.+..|.+++-+..... ........+..+.||.+.|....|-..+..
T Consensus 245 ~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~----------- 313 (1081)
T KOG0309|consen 245 NFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKEC----------- 313 (1081)
T ss_pred cCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccc-----------
Confidence 333445555553331111 111123333332211100 011224568899999999988877643310
Q ss_pred CCCCcccccccC-CCEEEEEeCCCcEEEEecCC
Q 000270 469 DSTPKFKNSWFC-HDNIVTCSRDGSAIIWIPRS 500 (1749)
Q Consensus 469 ~~~~~~~~s~~~-~~~LaSgS~DGtIrIWDl~s 500 (1749)
...+-. .-.|+|-+.|.++++|-+.+
T Consensus 314 ------~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 314 ------DGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ------cCCCCccceeEEEeecCCceEeeeccH
Confidence 000000 12699999999999998765
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1e-05 Score=95.93 Aligned_cols=159 Identities=18% Similarity=0.120 Sum_probs=105.3
Q ss_pred EEEEEcCCCcEEEEEeCCCeEEEEECCCCc----eEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcc
Q 000270 289 TDLAVSSNNALVASASNDCIIRVWRLPDGL----PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF 364 (1749)
Q Consensus 289 tsLafSPDg~lLASGS~DGtIrVWDl~tgk----~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~ 364 (1749)
..+..++.+++||.+..+....++++.... ++... .-...-+++.|..+.........+++...+.+|....+.+
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 344566777777777777666666554322 22221 1223334555555544322333455566666776654433
Q ss_pred cceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCC
Q 000270 365 SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN 444 (1749)
Q Consensus 365 l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~ 444 (1749)
... .+|-..++.++|+||+++|+++..|..|+|-..... ...-.-..||..
T Consensus 145 ~~~---------------------lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~--------f~IesfclGH~e 195 (390)
T KOG3914|consen 145 EPI---------------------LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT--------FVIESFCLGHKE 195 (390)
T ss_pred chh---------------------hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc--------cchhhhccccHh
Confidence 322 357778999999999999999999999999877431 111123458999
Q ss_pred CeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCC
Q 000270 445 DVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH 504 (1749)
Q Consensus 445 ~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~ 504 (1749)
-|..++..++ ..|+++|.|++|++||+.+++.+
T Consensus 196 FVS~isl~~~---------------------------~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 196 FVSTISLTDN---------------------------YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred heeeeeeccC---------------------------ceeeecCCCCcEEEEecccCCcc
Confidence 9999988775 47899999999999999998755
|
|
| >cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.2e-07 Score=95.22 Aligned_cols=66 Identities=8% Similarity=-0.018 Sum_probs=55.7
Q ss_pred ccccccccccccccc--ccCCCccccCCCCCCHHHHHHHhhhC-------CCCCHHHHHHHHHHHHHhhhhhcCC
Q 000270 1652 NRVQDQYGVQKLKQV--SQKTNFTNRFPVPLSLDVIQSRLENN-------YYRGLEAVKHDIAVMLSNAESYFGR 1717 (1749)
Q Consensus 1652 ~~~~~~~~~~~~~~~--~~~~~y~~~i~~PmDl~tI~~RLen~-------~Yr~~~~~~~Dv~li~~N~~~fN~~ 1717 (1749)
.++..+|+|..||+. ..+||||++||+||||+||+++|++. +|.--+....++..+..||..||..
T Consensus 16 ~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (114)
T cd05494 16 RRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEGRRSPSNIY 90 (114)
T ss_pred hhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHccccccccccccccccccccccccccccCccccc
Confidence 335689999999988 78999999999999999999999986 6666677777777888887777664
|
Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00027 Score=88.84 Aligned_cols=134 Identities=9% Similarity=-0.058 Sum_probs=82.1
Q ss_pred cEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcE-EEEEeCC---CeEEEEECCCCceEEEecCCCCceEEEEeccCCC
Q 000270 265 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL-VASASND---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPG 340 (1749)
Q Consensus 265 GtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~l-LASGS~D---GtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~ 340 (1749)
..|.+=|.+.. ..+.+... +.+....|+|||+. ++..+.+ ..|.++|+.+|+...... ..+.+....|+||++
T Consensus 169 ~~l~~~d~dg~-~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLT-YQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCC-ceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 34555555433 34434333 37889999999984 6654443 569999998887655443 556667788999987
Q ss_pred cceEEEeecC--CCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecC-CC--c
Q 000270 341 SVYQLLSSSD--DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DT--L 415 (1749)
Q Consensus 341 ~~~~LaSgS~--DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~-DG--t 415 (1749)
. ++++.+. +..|.++|+.++... .+.. +........|+|||+.|+..+. .+ .
T Consensus 246 ~--la~~~~~~g~~~Iy~~dl~~g~~~-~LT~--------------------~~~~d~~p~~SPDG~~I~F~Sdr~g~~~ 302 (419)
T PRK04043 246 K--LLLTMAPKGQPDIYLYDTNTKTLT-QITN--------------------YPGIDVNGNFVEDDKRIVFVSDRLGYPN 302 (419)
T ss_pred E--EEEEEccCCCcEEEEEECCCCcEE-Eccc--------------------CCCccCccEECCCCCEEEEEECCCCCce
Confidence 3 3334433 356777788766532 2210 1111234579999998777654 33 5
Q ss_pred EEEEeCCCC
Q 000270 416 ARVWNACKP 424 (1749)
Q Consensus 416 VrIWDl~t~ 424 (1749)
|.++++.++
T Consensus 303 Iy~~dl~~g 311 (419)
T PRK04043 303 IFMKKLNSG 311 (419)
T ss_pred EEEEECCCC
Confidence 777777543
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00033 Score=82.88 Aligned_cols=98 Identities=13% Similarity=0.095 Sum_probs=74.4
Q ss_pred EEEECC-CCCEEEEEeCCcE-EEEEECCCCeEEEEEccCCCCeE--EEEEcCCCcEEEEEeC-----CCeEEEEECC-CC
Q 000270 248 CAIFDR-SGRYVITGSDDRL-VKIWSMETAYCLASCRGHEGDIT--DLAVSSNNALVASASN-----DCIIRVWRLP-DG 317 (1749)
Q Consensus 248 ~VaFSP-DG~~LATGS~DGt-VrIWDl~Tg~~l~tL~gHs~~Vt--sLafSPDg~lLASGS~-----DGtIrVWDl~-tg 317 (1749)
.++.+| .+..+|.+-.-|+ ..+||..+++.+..+....+.-. .-+||+||++|.+.=. .|.|-|||.. +.
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 567888 5667777777664 67899999999887764333322 3679999999998644 4899999998 66
Q ss_pred ceEEEecCCCCceEEEEeccCCCcceEEEee
Q 000270 318 LPISVLRGHTAAVTAIAFSPRPGSVYQLLSS 348 (1749)
Q Consensus 318 k~l~tL~gHs~~VtsIaFSPdg~~~~~LaSg 348 (1749)
+.+..+..|.-.-..+.+.||+. .|+++
T Consensus 89 ~ri~E~~s~GIGPHel~l~pDG~---tLvVA 116 (305)
T PF07433_consen 89 RRIGEFPSHGIGPHELLLMPDGE---TLVVA 116 (305)
T ss_pred EEEeEecCCCcChhhEEEcCCCC---EEEEE
Confidence 78888888887788899999986 45543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00065 Score=79.08 Aligned_cols=229 Identities=14% Similarity=0.079 Sum_probs=144.8
Q ss_pred EEEEcC-CCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEec-cCCCcceEEEeecCCCcEEEEEcCCCcccce
Q 000270 290 DLAVSS-NNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFS-PRPGSVYQLLSSSDDGTCRIWDARYSQFSPR 367 (1749)
Q Consensus 290 sLafSP-Dg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFS-Pdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~ 367 (1749)
+++|.+ ++.++++-...+.|..|+..++.... +.... ..++++. +++ .|+.+...+ +.++|+.+++....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g----~l~v~~~~~-~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG----RLYVADSGG-IAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS----EEEEEETTC-EEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC----EEEEEEcCc-eEEEecCCCcEEEE
Confidence 578888 77788887788999999998775433 32222 6777887 554 456565554 56669888865443
Q ss_pred eecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCC--------CcEEEEeCCCCCCCCCCCCCcceeee
Q 000270 368 IYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD--------TLARVWNACKPNTDDSDQPNHEIDVL 439 (1749)
Q Consensus 368 l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~D--------GtVrIWDl~t~~~~~s~~~~~~i~~l 439 (1749)
..... .......++.+++.++|.+.++.... |.|..++.. ..+..+
T Consensus 76 ~~~~~---------------~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-----------~~~~~~ 129 (246)
T PF08450_consen 76 ADLPD---------------GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-----------GKVTVV 129 (246)
T ss_dssp EEEET---------------TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-----------SEEEEE
T ss_pred eeccC---------------CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-----------CeEEEE
Confidence 32210 01134568899999999977765433 456666653 122333
Q ss_pred cCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCE-EEEEeCCCcEEEEecCCCCCCccccccccccccCC
Q 000270 440 SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDN-IVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKV 518 (1749)
Q Consensus 440 ~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~-LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v 518 (1749)
...-...+.|+|+|++ +. +++-+..+.|..+++..........
T Consensus 130 ~~~~~~pNGi~~s~dg--------------------------~~lyv~ds~~~~i~~~~~~~~~~~~~~~---------- 173 (246)
T PF08450_consen 130 ADGLGFPNGIAFSPDG--------------------------KTLYVADSFNGRIWRFDLDADGGELSNR---------- 173 (246)
T ss_dssp EEEESSEEEEEEETTS--------------------------SEEEEEETTTTEEEEEEEETTTCCEEEE----------
T ss_pred ecCcccccceEECCcc--------------------------hheeecccccceeEEEeccccccceeee----------
Confidence 3334567899999987 44 4567778888888876422100000
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEc-CCCCcE
Q 000270 519 PPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH-PFNPRI 597 (1749)
Q Consensus 519 ~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafS-Pdd~rl 597 (1749)
.....+.......-.+++..+|++.++....+.|.+++.. |+++..+......+++++|. ++...+
T Consensus 174 ------------~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L 240 (246)
T PF08450_consen 174 ------------RVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTL 240 (246)
T ss_dssp ------------EEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEE
T ss_pred ------------eeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEE
Confidence 0000111111346789999999988888889999999987 99988887666689999994 544556
Q ss_pred EEEE
Q 000270 598 AMSA 601 (1749)
Q Consensus 598 LaSg 601 (1749)
++|.
T Consensus 241 ~vTt 244 (246)
T PF08450_consen 241 YVTT 244 (246)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6554
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00063 Score=84.95 Aligned_cols=273 Identities=11% Similarity=0.108 Sum_probs=152.1
Q ss_pred CcEEEEEeCCCeEEEEECCCCceEEEecCCCC----------ce-EEEEeccCCCcceEEEeecCCCcEEEEEcCCCccc
Q 000270 297 NALVASASNDCIIRVWRLPDGLPISVLRGHTA----------AV-TAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS 365 (1749)
Q Consensus 297 g~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~----------~V-tsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l 365 (1749)
+..|++++.+|.|.-+|..+|+.+........ .+ ..+... +. .++.++.+|.|..+|..+|+.+
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~--~~---~v~v~~~~g~l~ald~~tG~~~ 143 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVA--GG---KVYIGSEKGQVYALNAEDGEVA 143 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEE--CC---EEEEEcCCCEEEEEECCCCCCc
Confidence 44555666677777778777777665432210 00 011111 22 5777888999999999999977
Q ss_pred ceeecCCCCCcccCCCCCCCCCCCCCCCceEE-EEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCC
Q 000270 366 PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFC-CAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN 444 (1749)
Q Consensus 366 ~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~-LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~ 444 (1749)
....... .+.+ ... .+..+++++.+|.|..+|..+++. +-......
T Consensus 144 W~~~~~~---------------------~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~---------~W~~~~~~- 190 (394)
T PRK11138 144 WQTKVAG---------------------EALSRPVV--SDGLVLVHTSNGMLQALNESDGAV---------KWTVNLDV- 190 (394)
T ss_pred ccccCCC---------------------ceecCCEE--ECCEEEEECCCCEEEEEEccCCCE---------eeeecCCC-
Confidence 7653211 1111 111 134566677889999999876542 21111110
Q ss_pred CeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCC
Q 000270 445 DVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMP 524 (1749)
Q Consensus 445 ~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~ 524 (1749)
+. +...... ........++.++.+|.+..+|..+++. .|...... +
T Consensus 191 ~~--~~~~~~~--------------------sP~v~~~~v~~~~~~g~v~a~d~~~G~~-----~W~~~~~~----~--- 236 (394)
T PRK11138 191 PS--LTLRGES--------------------APATAFGGAIVGGDNGRVSAVLMEQGQL-----IWQQRISQ----P--- 236 (394)
T ss_pred Cc--ccccCCC--------------------CCEEECCEEEEEcCCCEEEEEEccCChh-----hheecccc----C---
Confidence 00 0000000 0000124677788899999999887663 23211100 0
Q ss_pred CCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEEeCC
Q 000270 525 PQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYD 604 (1749)
Q Consensus 525 ~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSgs~D 604 (1749)
........+... .....+ .+..|++++.+|.+..+|..+|+.+....-. ....+... ++ .|+.++.+
T Consensus 237 ---~~~~~~~~~~~~---~~sP~v--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~~--~~-~vy~~~~~ 303 (394)
T PRK11138 237 ---TGATEIDRLVDV---DTTPVV--VGGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAVD--GG-RIYLVDQN 303 (394)
T ss_pred ---CCccchhccccc---CCCcEE--ECCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEEE--CC-EEEEEcCC
Confidence 000000000000 001111 2456777788999999999999987654321 11122221 33 45567789
Q ss_pred CcEEEEeCCCCceEEEEee--e-ec--c--CCCEEEEEcCCCeEEEEECCCCccccc
Q 000270 605 GKTIVWDIWEGIPIRIYEI--S-RF--R--DGASIILSDDVGQLYILNTGQGESQKD 654 (1749)
Q Consensus 605 GtIrVWDl~tGk~l~tl~~--~-~~--s--DG~~LAsgd~DG~I~IWdl~tGe~~k~ 654 (1749)
|.|..+|..+|+.+-.... + .. + .+..|++++.+|.|+++|..+|+.+-.
T Consensus 304 g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~ 360 (394)
T PRK11138 304 DRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQ 360 (394)
T ss_pred CeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 9999999999987644321 1 11 1 466778889999999999999987643
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.22 E-value=3e-05 Score=92.45 Aligned_cols=225 Identities=14% Similarity=0.124 Sum_probs=149.8
Q ss_pred CCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCC--C-ceEEEecCCCCceEEEEeccCCCcceEEEeecC-CCcEEEEEc
Q 000270 284 HEGDITDLAVSSNNALVASASNDCIIRVWRLPD--G-LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD-DGTCRIWDA 359 (1749)
Q Consensus 284 Hs~~VtsLafSPDg~lLASGS~DGtIrVWDl~t--g-k~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~-DGtIrIWDl 359 (1749)
|...|+.+..+ -.+++.+++.||.++.|--.. | +.+..+..|-+.|.+++.+-++- ++.+.+. |..++++|+
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~---L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW---LFRSVEDPDHSVKVFDV 83 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce---eEeeccCcccceeEEEe
Confidence 77778777654 567999999999999997432 2 44556678999999999999885 7778777 999999999
Q ss_pred CCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCC--CEEEEe-cCCCcEEEEeCCCCCCCCCCCCCcce
Q 000270 360 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG--TVFVTG-SSDTLARVWNACKPNTDDSDQPNHEI 436 (1749)
Q Consensus 360 ~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG--~~LaSG-s~DGtVrIWDl~t~~~~~s~~~~~~i 436 (1749)
..-..+.-+.+... .+.+ ++..++.. ..|+++ -.+|.|.|+|-.... ....
T Consensus 84 En~DminmiKL~~l------------------Pg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~-------~q~~ 137 (558)
T KOG0882|consen 84 ENFDMINMIKLVDL------------------PGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDF-------CQDG 137 (558)
T ss_pred eccchhhhcccccC------------------CCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCc-------Cccc
Confidence 87665543322111 1111 12222221 134433 357889999975422 1223
Q ss_pred eeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCcccccccccccc
Q 000270 437 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 516 (1749)
Q Consensus 437 ~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l 516 (1749)
..-.-|..+|.++.+.+.+ +.+++....|.|.-|.....-
T Consensus 138 ~fkklH~sPV~~i~y~qa~--------------------------Ds~vSiD~~gmVEyWs~e~~~-------------- 177 (558)
T KOG0882|consen 138 YFKKLHFSPVKKIRYNQAG--------------------------DSAVSIDISGMVEYWSAEGPF-------------- 177 (558)
T ss_pred eecccccCceEEEEeeccc--------------------------cceeeccccceeEeecCCCcc--------------
Confidence 3445689999999999876 788888889999999776200
Q ss_pred CCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEe
Q 000270 517 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL 578 (1749)
Q Consensus 517 ~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL 578 (1749)
..+............-+..+.......+++.|+|+|..+++-+.|..|+++++.+|++++.+
T Consensus 178 qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 178 QFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred cCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 00000001111111112223334456789999999999999999999999999999887765
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00018 Score=90.43 Aligned_cols=184 Identities=9% Similarity=-0.006 Sum_probs=112.2
Q ss_pred cceEEEEccCCCCEEEEEECCCCCE-EEEEeC---CcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEE-eCC-
Q 000270 233 MQNIKRVRGHRNAVYCAIFDRSGRY-VITGSD---DRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASA-SND- 306 (1749)
Q Consensus 233 ~~~i~tL~GH~~~Vt~VaFSPDG~~-LATGS~---DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASG-S~D- 306 (1749)
+...+.+.... .+....|+|||+. ++..+. ...|.++|+.+|+..... ...+.+....|+|||+.|+.. +.+
T Consensus 178 g~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g 255 (419)
T PRK04043 178 LTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKG 255 (419)
T ss_pred CCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCC
Confidence 33344444443 7888999999985 654433 357999999888654443 345667778899999866644 333
Q ss_pred -CeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCC--cEEEEEcCCCcccceeecCCCCCcccCCCCC
Q 000270 307 -CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG--TCRIWDARYSQFSPRIYIPRPSDAVAGRNMA 383 (1749)
Q Consensus 307 -GtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DG--tIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~ 383 (1749)
..|.++++.++... .+..+.+......|+|||+. ++++....| .|.++|+.++.......
T Consensus 256 ~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~--I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-------------- 318 (419)
T PRK04043 256 QPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKR--IVFVSDRLGYPNIFMKKLNSGSVEQVVF-------------- 318 (419)
T ss_pred CcEEEEEECCCCcEE-EcccCCCccCccEECCCCCE--EEEEECCCCCceEEEEECCCCCeEeCcc--------------
Confidence 56888898877643 44434444456689999972 333333333 57777777665322110
Q ss_pred CCCCCCCCCCceEEEEEcCCCCEEEEecCC---------CcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCC
Q 000270 384 PSSSAGPQSHQIFCCAFNANGTVFVTGSSD---------TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454 (1749)
Q Consensus 384 ~~~s~~~h~~~Vt~LafSPDG~~LaSGs~D---------GtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpd 454 (1749)
.+. ....|+|||+.|+..... ..|.+.|+.++. ...+... .......|+|+
T Consensus 319 -----~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~----------~~~LT~~-~~~~~p~~SPD 378 (419)
T PRK04043 319 -----HGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY----------IRRLTAN-GVNQFPRFSSD 378 (419)
T ss_pred -----CCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC----------eEECCCC-CCcCCeEECCC
Confidence 011 123899999988776543 257777875432 1222222 12335779998
Q ss_pred C
Q 000270 455 A 455 (1749)
Q Consensus 455 g 455 (1749)
+
T Consensus 379 G 379 (419)
T PRK04043 379 G 379 (419)
T ss_pred C
Confidence 7
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0004 Score=80.10 Aligned_cols=244 Identities=17% Similarity=0.124 Sum_probs=137.3
Q ss_pred EEEEcCCCcEEEEEeCCCeEEEEECCCC--ceEEEec---CCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcc
Q 000270 290 DLAVSSNNALVASASNDCIIRVWRLPDG--LPISVLR---GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF 364 (1749)
Q Consensus 290 sLafSPDg~lLASGS~DGtIrVWDl~tg--k~l~tL~---gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~ 364 (1749)
.++.+.+|++||..- |..|.|=..++. ..+.... ...-.=..++|+||+. +||.+...|+|+++|+....
T Consensus 2 ~~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t---lLa~a~S~G~i~vfdl~g~~- 76 (282)
T PF15492_consen 2 HLALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT---LLAYAESTGTIRVFDLMGSE- 76 (282)
T ss_pred ceeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc---EEEEEcCCCeEEEEecccce-
Confidence 367788998887764 556777655443 2222222 2223447899999987 89999999999999997533
Q ss_pred cceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCC------CEEEEecCCCcEEEEeCCCCCCCCCCCCCcceee
Q 000270 365 SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG------TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDV 438 (1749)
Q Consensus 365 l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG------~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~ 438 (1749)
+..+ +.... ....-...|..+.|.+-. ..|++-...|.++-|-+..+.. ...+.......
T Consensus 77 lf~I--~p~~~-----------~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~-q~y~e~hsfsf 142 (282)
T PF15492_consen 77 LFVI--PPAMS-----------FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTN-QGYQENHSFSF 142 (282)
T ss_pred eEEc--Ccccc-----------cCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccC-CcceeeEEEEe
Confidence 2222 11110 011234556677775422 2455566788888777633211 11111112222
Q ss_pred ecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeC-CC----------cEEEEecCCCCCCccc
Q 000270 439 LSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR-DG----------SAIIWIPRSRRSHPKA 507 (1749)
Q Consensus 439 l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~-DG----------tIrIWDl~s~k~~~~~ 507 (1749)
...+...|.++.|+|.- ++|+.||. .. -+..|.+-++.+..+.
T Consensus 143 ~~~yp~Gi~~~vy~p~h--------------------------~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~ 196 (282)
T PF15492_consen 143 SSHYPHGINSAVYHPKH--------------------------RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQ 196 (282)
T ss_pred cccCCCceeEEEEcCCC--------------------------CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEE
Confidence 23357789999999864 45544442 11 2556766555443322
Q ss_pred cccccccccCCCCCC---CCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCC
Q 000270 508 ARWTQAYHLKVPPPP---MPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH 581 (1749)
Q Consensus 508 ~~~~~~~~l~v~~~~---~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH 581 (1749)
.. .+.-.+.... ....................|..|.+||||+.||+...+|.|.+|++.+-.+...+.-+
T Consensus 197 v~---~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 197 VT---SSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred cc---ccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 11 0000000000 00000000000111234567999999999999999999999999999988877766544
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.6e-05 Score=89.10 Aligned_cols=266 Identities=19% Similarity=0.279 Sum_probs=158.2
Q ss_pred CCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCe-----EEEEEccCC------------CCeEEEEEcCCCc--EEEEE
Q 000270 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY-----CLASCRGHE------------GDITDLAVSSNNA--LVASA 303 (1749)
Q Consensus 243 ~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~-----~l~tL~gHs------------~~VtsLafSPDg~--lLASG 303 (1749)
...|++|.|...|.|||||...|.|.+|.-.... .+..|++|. ..|..|.|..++. .++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4579999999999999999999999999765432 233466664 3477888876543 45566
Q ss_pred eCCCeEEEEECCCC-------------------c------------------eE-----EEe-cCCCCceEEEEeccCCC
Q 000270 304 SNDCIIRVWRLPDG-------------------L------------------PI-----SVL-RGHTAAVTAIAFSPRPG 340 (1749)
Q Consensus 304 S~DGtIrVWDl~tg-------------------k------------------~l-----~tL-~gHs~~VtsIaFSPdg~ 340 (1749)
+.|.+|++|.+... . .+ +.. ..|..-|.+|.|..|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 78999999977321 0 01 111 35777788999998865
Q ss_pred cceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCC-CCEEEEecCCCcEEEE
Q 000270 341 SVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVW 419 (1749)
Q Consensus 341 ~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPD-G~~LaSGs~DGtVrIW 419 (1749)
.+++ +.|=.|.+|++.-......+.--.|... ..-..-|++..|+|. ...|.-.+..|.|++-
T Consensus 186 ---t~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nm------------eeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 186 ---TLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNM------------EELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred ---eeee-ccceeeeeccccccCCceEEEeccCccH------------HHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 4554 5567799998875433322221111100 011234778889984 4566677789999999
Q ss_pred eCCCCCCCCCCC-------CCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCc
Q 000270 420 NACKPNTDDSDQ-------PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGS 492 (1749)
Q Consensus 420 Dl~t~~~~~s~~-------~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGt 492 (1749)
|++......... .+.....+.+-...|..+.|++.+ .+|++- .=-+
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng--------------------------ryIlsR-dylt 302 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG--------------------------RYILSR-DYLT 302 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC--------------------------cEEEEe-ccce
Confidence 997432211000 011111223334567778888876 455443 3458
Q ss_pred EEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccC--CCC---CeeEEEEcCCCCEEEEEeCCCeEEEE
Q 000270 493 AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP--TPR---GVNMIVWSLDNRFVLAAIMDCRICVW 567 (1749)
Q Consensus 493 IrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~--h~~---~VtsVafSPDG~~LATGs~DGtI~VW 567 (1749)
|+|||++..+....... .+ .....++.. ... .-..+.||.|.+.+++|+.....-||
T Consensus 303 vkiwDvnm~k~pikTi~----~h--------------~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 303 VKIWDVNMAKNPIKTIP----MH--------------CDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred EEEEecccccCCceeec----hH--------------HHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeee
Confidence 99999886431110000 00 000000000 011 12457889999999999988777676
Q ss_pred EC
Q 000270 568 NA 569 (1749)
Q Consensus 568 Dl 569 (1749)
-+
T Consensus 365 p~ 366 (460)
T COG5170 365 PT 366 (460)
T ss_pred cc
Confidence 54
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00028 Score=80.93 Aligned_cols=234 Identities=14% Similarity=0.099 Sum_probs=135.2
Q ss_pred CCcEEEEEECCCCeEEEEEccC--CCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCC
Q 000270 263 DDRLVKIWSMETAYCLASCRGH--EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPG 340 (1749)
Q Consensus 263 ~DGtVrIWDl~Tg~~l~tL~gH--s~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~ 340 (1749)
++|+|..||..+|+.+....-- .....+. ..+++..|++++.++.|..||..+|+.+..... ...+.......++
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~- 77 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVDGG- 77 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEETT-
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeeccc-
Confidence 3789999999999999887531 1222222 233566677778999999999999998887764 2222111222222
Q ss_pred cceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEe
Q 000270 341 SVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420 (1749)
Q Consensus 341 ~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWD 420 (1749)
.+++++.++.|..+|..+|+.+........ ..............+..++++..++.|..+|
T Consensus 78 ---~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d 138 (238)
T PF13360_consen 78 ---RVYVGTSDGSLYALDAKTGKVLWSIYLTSS----------------PPAGVRSSSSPAVDGDRLYVGTSSGKLVALD 138 (238)
T ss_dssp ---EEEEEETTSEEEEEETTTSCEEEEEEE-SS----------------CTCSTB--SEEEEETTEEEEEETCSEEEEEE
T ss_pred ---ccccccceeeeEecccCCcceeeeeccccc----------------cccccccccCceEecCEEEEEeccCcEEEEe
Confidence 566777888999999999998776421100 0000111222222377888888899999999
Q ss_pred CCCCCCCCCCCCCcceeeecCCCCCe-EEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecC
Q 000270 421 ACKPNTDDSDQPNHEIDVLSGHENDV-NYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPR 499 (1749)
Q Consensus 421 l~t~~~~~s~~~~~~i~~l~gH~~~V-~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~ 499 (1749)
+.+++ .+.......... ..+....+. ..........++.++.+|.+..+|+.
T Consensus 139 ~~tG~---------~~w~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~v~~~~~~g~~~~~d~~ 191 (238)
T PF13360_consen 139 PKTGK---------LLWKYPVGEPRGSSPISSFSDI------------------NGSPVISDGRVYVSSGDGRVVAVDLA 191 (238)
T ss_dssp TTTTE---------EEEEEESSTT-SS--EEEETTE------------------EEEEECCTTEEEEECCTSSEEEEETT
T ss_pred cCCCc---------EEEEeecCCCCCCcceeeeccc------------------ccceEEECCEEEEEcCCCeEEEEECC
Confidence 97643 333333322111 111000000 00001112477777778864444888
Q ss_pred CCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEE
Q 000270 500 SRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHS 577 (1749)
Q Consensus 500 s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~t 577 (1749)
+++. .|... ...+.. ....++..|++++.++.|..||+.+|+.+.+
T Consensus 192 tg~~-----~w~~~--------------------------~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 192 TGEK-----LWSKP--------------------------ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TTEE-----EEEEC--------------------------SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred CCCE-----EEEec--------------------------CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 7541 12111 011222 1346778888888999999999999988754
|
... |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0011 Score=77.11 Aligned_cols=194 Identities=11% Similarity=0.040 Sum_probs=119.9
Q ss_pred EEEECC-CCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEc-CCCcEEEEEeCCCeEEEEECCCCceEEEecC
Q 000270 248 CAIFDR-SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVS-SNNALVASASNDCIIRVWRLPDGLPISVLRG 325 (1749)
Q Consensus 248 ~VaFSP-DG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafS-PDg~lLASGS~DGtIrVWDl~tgk~l~tL~g 325 (1749)
+++|.+ +|.++++--..+.|..|+..++.... +.... ...+++. +++.++++ ... .+.++|+.+++....+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~-~~~-~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVA-DSG-GIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEE-ETT-CEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEE-EcC-ceEEEecCCCcEEEEeec
Confidence 578988 77888887789999999999876543 22222 7778888 67665555 444 456669988854433332
Q ss_pred -----CCCceEEEEeccCCCcceEEEeecCC--------CcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000270 326 -----HTAAVTAIAFSPRPGSVYQLLSSSDD--------GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1749)
Q Consensus 326 -----Hs~~VtsIaFSPdg~~~~~LaSgS~D--------GtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~ 392 (1749)
.....+.+++.++|. +.++.... |.|..++.. ++...... .-
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~---ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~---------------------~~ 133 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGN---LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD---------------------GL 133 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS----EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE---------------------EE
T ss_pred cCCCcccCCCceEEEcCCCC---EEEEecCCCccccccccceEEECCC-CeEEEEec---------------------Cc
Confidence 345678999999986 45544332 456666665 33222111 12
Q ss_pred CceEEEEEcCCCCEEE-EecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCC
Q 000270 393 HQIFCCAFNANGTVFV-TGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDST 471 (1749)
Q Consensus 393 ~~Vt~LafSPDG~~La-SGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~ 471 (1749)
...+.|+|+|+++.|+ +-+..+.|..|++...... ......+..+....+....+++..++
T Consensus 134 ~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~g~pDG~~vD~~G---------------- 195 (246)
T PF08450_consen 134 GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE--LSNRRVFIDFPGGPGYPDGLAVDSDG---------------- 195 (246)
T ss_dssp SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC--EEEEEEEEE-SSSSCEEEEEEEBTTS----------------
T ss_pred ccccceEECCcchheeecccccceeEEEeccccccc--eeeeeeEEEcCCCCcCCCcceEcCCC----------------
Confidence 3467999999998765 5567788988888532100 00001111222222346778887766
Q ss_pred CcccccccCCCEEEEEeCCCcEEEEecC
Q 000270 472 PKFKNSWFCHDNIVTCSRDGSAIIWIPR 499 (1749)
Q Consensus 472 ~~~~~s~~~~~~LaSgS~DGtIrIWDl~ 499 (1749)
++.++....+.|.+++..
T Consensus 196 ----------~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 196 ----------NLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp -----------EEEEEETTTEEEEEETT
T ss_pred ----------CEEEEEcCCCEEEEECCC
Confidence 677777788999999876
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.2e-06 Score=96.17 Aligned_cols=174 Identities=18% Similarity=0.202 Sum_probs=123.5
Q ss_pred CEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEE
Q 000270 405 TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI 484 (1749)
Q Consensus 405 ~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~L 484 (1749)
-.+++| .+..|-+-++.++.. ..+ ...+.|.+++|...+ +++
T Consensus 226 yhfs~G-~sqqv~L~nvetg~~----------qsf-~sksDVfAlQf~~s~--------------------------nLv 267 (425)
T KOG2695|consen 226 YHFSVG-LSQQVLLTNVETGHQ----------QSF-QSKSDVFALQFAGSD--------------------------NLV 267 (425)
T ss_pred eeeccc-ccceeEEEEeecccc----------ccc-ccchhHHHHHhcccC--------------------------Cee
Confidence 344444 456677778765321 112 245677777777654 799
Q ss_pred EEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcC-CCCEEEEEeCCCe
Q 000270 485 VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL-DNRFVLAAIMDCR 563 (1749)
Q Consensus 485 aSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSP-DG~~LATGs~DGt 563 (1749)
+.|+..|.|...|++.+.. .........-|...|+++..-. ++++|++.+.+|+
T Consensus 268 ~~GcRngeI~~iDLR~rnq-------------------------G~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gk 322 (425)
T KOG2695|consen 268 FNGCRNGEIFVIDLRCRNQ-------------------------GNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGK 322 (425)
T ss_pred EecccCCcEEEEEeeeccc-------------------------CCCcceEEEEcCcchhhhhhhccccceEeeccCcCc
Confidence 9999999999999997421 0112223345778888887766 8899999999999
Q ss_pred EEEEECCCCce---EEEecCCCCCeEEEEE--cCCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeeecc---CCCEEEEE
Q 000270 564 ICVWNAADGSL---VHSLTGHTESTYVLDV--HPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR---DGASIILS 635 (1749)
Q Consensus 564 I~VWDl~tgkl---v~tL~gH~~~VtsLaf--SPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~~~s---DG~~LAsg 635 (1749)
|++||.+--++ +.++.||-..-.-+-+ ++ ...+++++|.|...+||.+..|.++.++...... |+..++..
T Consensus 323 ikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 323 IKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred eeEeeehhhhcccceeeeeccccccccccccccc-ccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 99999987777 8899999664444433 34 4568888999999999999999999988754222 67777766
Q ss_pred cCCCeEE
Q 000270 636 DDVGQLY 642 (1749)
Q Consensus 636 d~DG~I~ 642 (1749)
+.+|.+.
T Consensus 402 sr~~k~~ 408 (425)
T KOG2695|consen 402 SRLGKAR 408 (425)
T ss_pred ccccccc
Confidence 6665544
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.002 Score=85.36 Aligned_cols=260 Identities=12% Similarity=0.145 Sum_probs=150.0
Q ss_pred CCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEc----C
Q 000270 285 EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA----R 360 (1749)
Q Consensus 285 s~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl----~ 360 (1749)
...|.++.|.-+..-|+.+..+|.|.+-|..+.... ....-...|.+++|+||.. .++..+..++|.+-.- -
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee---~l~liT~~~tll~mT~~f~~i 143 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEE---LLALITGRQTLLFMTKDFEPI 143 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCc---EEEEEeCCcEEEEEeccccch
Confidence 468999999999999999999999999988776432 2223457899999999987 7777777777766432 1
Q ss_pred CCcccc--------eeec--CCCCCcccCCCCCC-------CCCCCC---CCCceEEEEEcCCCCEEEEe-----cCCCc
Q 000270 361 YSQFSP--------RIYI--PRPSDAVAGRNMAP-------SSSAGP---QSHQIFCCAFNANGTVFVTG-----SSDTL 415 (1749)
Q Consensus 361 tg~~l~--------~l~~--~~~~~~~~g~~~~~-------~~s~~~---h~~~Vt~LafSPDG~~LaSG-----s~DGt 415 (1749)
.-+.+. .+.+ ........|..... .....+ ....=+.|+|--||.+||+. .....
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 111110 0000 00000000100000 000000 11223469999999999983 33378
Q ss_pred EEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEE---eCCCc
Q 000270 416 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC---SRDGS 492 (1749)
Q Consensus 416 VrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSg---S~DGt 492 (1749)
|+|||-. +....... ...+.-.+++|-|.| ..+++. +.|+.
T Consensus 224 irV~drE-g~Lns~se---------~~~~l~~~LsWkPsg--------------------------s~iA~iq~~~sd~~ 267 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSE---------PVEGLQHSLSWKPSG--------------------------SLIAAIQCKTSDSD 267 (1265)
T ss_pred EEEeccc-chhhcccC---------cccccccceeecCCC--------------------------CeEeeeeecCCCCc
Confidence 9999975 22211111 122333568888866 455543 34567
Q ss_pred EEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEE---EeCCCeEEEEEC
Q 000270 493 AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA---AIMDCRICVWNA 569 (1749)
Q Consensus 493 IrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LAT---Gs~DGtI~VWDl 569 (1749)
|.+|.-+.-+ + +.....+......|..++|+.++..||+ ......|++|-+
T Consensus 268 IvffErNGL~-h-------------------------g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 268 IVFFERNGLR-H-------------------------GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred EEEEecCCcc-c-------------------------cccccCCcccccchheeeecCCCCceeeeecccccceEEEEEe
Confidence 8888654311 1 1111111222334899999999999998 555566999998
Q ss_pred CCCc--eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 000270 570 ADGS--LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1749)
Q Consensus 570 ~tgk--lv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl 612 (1749)
.+.. +.+.+.-..... +.|+|.....|..-..+|.+.++++
T Consensus 322 ~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 322 GNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred cCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 7643 333443333322 8888855554444446666666554
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.4e-05 Score=88.05 Aligned_cols=73 Identities=21% Similarity=0.362 Sum_probs=62.5
Q ss_pred CeeEEEEcCCC-CEEEEEeCCCeEEEEECCCCceE-EEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 000270 542 GVNMIVWSLDN-RFVLAAIMDCRICVWNAADGSLV-HSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1749)
Q Consensus 542 ~VtsVafSPDG-~~LATGs~DGtI~VWDl~tgklv-~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~t 614 (1749)
.|++++-+|.. ..+++|+.||.|-+||.+..... ..+..|..+|+.+-|||.++..|++++.||.+-.||..+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 38888888865 46677889999999999887543 467899999999999999999999999999999999864
|
|
| >KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=3e-06 Score=112.59 Aligned_cols=83 Identities=18% Similarity=0.330 Sum_probs=75.9
Q ss_pred cccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHh
Q 000270 1658 YGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLS 1737 (1749)
Q Consensus 1658 ~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~~s~~~~~a~~l~~~~~~~l~ 1737 (1749)
--|..|+...+.|||+++|+.||||.||+.+|++..|+++++|..|+.+|..||..||..++.+++.|.++++.....+.
T Consensus 584 gif~~pvd~~e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn~~dtv~~r~av~~~e~~~~~~~ 663 (1051)
T KOG0955|consen 584 GIFAEPVDPSELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYNAKDTVYYRAAVRLRELIKKDFR 663 (1051)
T ss_pred CceeeccChhhcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhhccCeehHhhhHHHHhhhhhHHH
Confidence 34667777889999999999999999999999999999999999999999999999999999999999999999877665
Q ss_pred cCC
Q 000270 1738 SLK 1740 (1749)
Q Consensus 1738 ~~~ 1740 (1749)
+.+
T Consensus 664 ~ar 666 (1051)
T KOG0955|consen 664 NAR 666 (1051)
T ss_pred hcc
Confidence 543
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00041 Score=79.62 Aligned_cols=217 Identities=14% Similarity=0.113 Sum_probs=130.4
Q ss_pred CCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCC
Q 000270 351 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD 430 (1749)
Q Consensus 351 DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~ 430 (1749)
+|+|..||..+|+.+....+.. ......+..+ +++..+++++.++.|..||+.+++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~------------------~~~~~~~~~~-~~~~~v~~~~~~~~l~~~d~~tG~----- 57 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP------------------GIGGPVATAV-PDGGRVYVASGDGNLYALDAKTGK----- 57 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS------------------SCSSEEETEE-EETTEEEEEETTSEEEEEETTTSE-----
T ss_pred CCEEEEEECCCCCEEEEEECCC------------------CCCCccceEE-EeCCEEEEEcCCCEEEEEECCCCC-----
Confidence 6889999999998887764311 0111222222 245567777889999999996642
Q ss_pred CCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCcccccc
Q 000270 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1749)
Q Consensus 431 ~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~ 510 (1749)
.+..... ...+... .......++.++.++.|+.+|..+++.. |
T Consensus 58 ----~~W~~~~-~~~~~~~---------------------------~~~~~~~v~v~~~~~~l~~~d~~tG~~~-----W 100 (238)
T PF13360_consen 58 ----VLWRFDL-PGPISGA---------------------------PVVDGGRVYVGTSDGSLYALDAKTGKVL-----W 100 (238)
T ss_dssp ----EEEEEEC-SSCGGSG---------------------------EEEETTEEEEEETTSEEEEEETTTSCEE-----E
T ss_pred ----EEEEeec-cccccce---------------------------eeecccccccccceeeeEecccCCccee-----e
Confidence 2222221 1110000 0112357777888999999998887632 2
Q ss_pred cc-ccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCC-----
Q 000270 511 TQ-AYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTES----- 584 (1749)
Q Consensus 511 ~~-~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~----- 584 (1749)
.. ... .........+....++..++++..++.|..+|+.+|+.+.........
T Consensus 101 ~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~ 159 (238)
T PF13360_consen 101 SIYLTS---------------------SPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPI 159 (238)
T ss_dssp EEEE-S---------------------SCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--E
T ss_pred eecccc---------------------ccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcce
Confidence 21 100 000001111222223888888998999999999999999887664422
Q ss_pred -----e-EEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEeee-----eccCCCEEEEEcCCCeEEEEECCCCccc
Q 000270 585 -----T-YVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS-----RFRDGASIILSDDVGQLYILNTGQGESQ 652 (1749)
Q Consensus 585 -----V-tsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~-----~~sDG~~LAsgd~DG~I~IWdl~tGe~~ 652 (1749)
+ ..+.+. ++ .++.++.+|.+..+|+.+|+.+-....+ ...++..|++++.+|.|+.||+.+|+..
T Consensus 160 ~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~d~~tg~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 160 SSFSDINGSPVIS--DG-RVYVSSGDGRVVAVDLATGEKLWSKPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp EEETTEEEEEECC--TT-EEEEECCTSSEEEEETTTTEEEEEECSS-ECECEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred eeecccccceEEE--CC-EEEEEcCCCeEEEEECCCCCEEEEecCCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 1 223332 34 5555677775444499999966322211 1227888888889999999999998753
|
... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.08 E-value=8.2e-06 Score=66.84 Aligned_cols=38 Identities=21% Similarity=0.686 Sum_probs=36.6
Q ss_pred ceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEE
Q 000270 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWS 271 (1749)
Q Consensus 234 ~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWD 271 (1749)
+++++|.+|.+.|++|+|+|++.+||+|+.|++|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57899999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.9e-05 Score=87.40 Aligned_cols=169 Identities=17% Similarity=0.183 Sum_probs=110.2
Q ss_pred cceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEE-EEccCCCCeEEEEEcCCCcEEEEEeC-----C
Q 000270 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLA-SCRGHEGDITDLAVSSNNALVASASN-----D 306 (1749)
Q Consensus 233 ~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~-tL~gHs~~VtsLafSPDg~lLASGS~-----D 306 (1749)
....+.+..|.+.-.+-+.+-.++.+++|..||.+.+++.+.-..+. .+..-...-.+.++...+++|.++.. -
T Consensus 79 i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~ 158 (319)
T KOG4714|consen 79 IDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQ 158 (319)
T ss_pred cCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeec
Confidence 34556666777766666677778889999999999999987521111 11111111122333345566655432 1
Q ss_pred CeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCC
Q 000270 307 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1749)
Q Consensus 307 GtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~ 386 (1749)
+..+.|++...+.+..-..-...|++++-+|..+ +++++|+.||.|-+||.+.......+
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq--~~v~cgt~dg~~~l~d~rn~~~p~S~------------------ 218 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQ--HLVCCGTDDGIVGLWDARNVAMPVSL------------------ 218 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccc--cEEEEecCCCeEEEEEcccccchHHH------------------
Confidence 3455565543222111111223489999999765 58899999999999999876432222
Q ss_pred CCCCCCCceEEEEEcC-CCCEEEEecCCCcEEEEeCC
Q 000270 387 SAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNAC 422 (1749)
Q Consensus 387 s~~~h~~~Vt~LafSP-DG~~LaSGs~DGtVrIWDl~ 422 (1749)
...|...|+-+-|+| ++..|.+++.||.+.-||..
T Consensus 219 -l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 219 -LKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred -HHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 346788899999999 67889999999999999985
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.9e-06 Score=103.17 Aligned_cols=194 Identities=18% Similarity=0.262 Sum_probs=134.9
Q ss_pred CCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCccccccccc
Q 000270 385 SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLAD 464 (1749)
Q Consensus 385 ~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~ 464 (1749)
...+..+....+|++|+.+.++|++|+..|.|++|++.++. ......+|...|+.|.-+.++
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~---------~e~s~ncH~SavT~vePs~dg--------- 1155 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS---------MEESVNCHQSAVTLVEPSVDG--------- 1155 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc---------ccccccccccccccccccCCc---------
Confidence 34455677889999999999999999999999999997753 344567899999999888776
Q ss_pred CCCCCCCCcccccccCCCEEEEEeC-CC-cEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCC
Q 000270 465 SSKEDSTPKFKNSWFCHDNIVTCSR-DG-SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRG 542 (1749)
Q Consensus 465 ~~~~~~~~~~~~s~~~~~~LaSgS~-DG-tIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~ 542 (1749)
..+++.+. .. -..+|++.+ .+++...+ ..
T Consensus 1156 -----------------s~~Ltsss~S~PlsaLW~~~s----------------------------~~~~~Hsf----~e 1186 (1516)
T KOG1832|consen 1156 -----------------STQLTSSSSSSPLSALWDASS----------------------------TGGPRHSF----DE 1186 (1516)
T ss_pred -----------------ceeeeeccccCchHHHhcccc----------------------------ccCccccc----cc
Confidence 34443332 22 467887764 11222222 23
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEe-cC---CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceE
Q 000270 543 VNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL-TG---HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618 (1749)
Q Consensus 543 VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL-~g---H~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l 618 (1749)
-.++.|+..-.+-+.|+....+.|||+.++.++.++ .+ ..-.-+...|+|.+..+| .|| .+||+...+.+
T Consensus 1187 d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl----ndG--vLWDvR~~~aI 1260 (1516)
T KOG1832|consen 1187 DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL----NDG--VLWDVRIPEAI 1260 (1516)
T ss_pred cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe----eCc--eeeeeccHHHH
Confidence 456778776666666766678999999999888773 32 222336788999654333 466 47999888777
Q ss_pred EEEe-------eeeccCCCEEEEEcCCCeEEEEECCCCccccccc
Q 000270 619 RIYE-------ISRFRDGASIILSDDVGQLYILNTGQGESQKDAK 656 (1749)
Q Consensus 619 ~tl~-------~~~~sDG~~LAsgd~DG~I~IWdl~tGe~~k~~~ 656 (1749)
+.|. ++++|.|..++.-+. |||+.+-+.+...|
T Consensus 1261 h~FD~ft~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1261 HRFDQFTDYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVP 1300 (1516)
T ss_pred hhhhhheecccccccCCCceEEeech-----hhhhHHHHHHhcCc
Confidence 6654 345668888887765 89998776665444
|
|
| >KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.7e-06 Score=103.14 Aligned_cols=109 Identities=19% Similarity=0.227 Sum_probs=90.6
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhhcccc-cc-cccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHH
Q 000270 1628 EQPRIDDDNRNKLLSAFAKLEQSANRVQ-DQ-YGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIA 1705 (1749)
Q Consensus 1628 ~~p~idpe~r~kl~~~~~~l~~~~~~~~-~~-~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~ 1705 (1749)
..|.+++....++..+|..+.......- .. -.|.++......|+||.+|..||.|..|++|+..+.|++.+.|..|+.
T Consensus 45 d~p~i~~~~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~ 124 (629)
T KOG1827|consen 45 DSPVIDPPLIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFL 124 (629)
T ss_pred CccccChHHHHHHHHHHHHHHhhccccCcccchhHhhccccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHH
Confidence 4455666666777777776665442221 12 246777778888999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCCHHHHHHHHHHHHHHHHH
Q 000270 1706 VMLSNAESYFGRNTDLSTKIKRLSDLVTRTL 1736 (1749)
Q Consensus 1706 li~~N~~~fN~~~s~~~~~a~~l~~~~~~~l 1736 (1749)
+|++||++||.+++.+++++..|+..|....
T Consensus 125 lm~ena~~~n~~ds~~~~~s~~l~~~~~~~~ 155 (629)
T KOG1827|consen 125 LMTENARLYNRPDSLIYKDSGELEKYFISLE 155 (629)
T ss_pred HHHHHHHHhcCcchhhhhhhhhhhcchhhhh
Confidence 9999999999999999999999999998854
|
|
| >KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.8e-06 Score=112.78 Aligned_cols=92 Identities=17% Similarity=0.277 Sum_probs=83.6
Q ss_pred ccccccccccccccc-cc-CCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHH
Q 000270 1652 NRVQDQYGVQKLKQV-SQ-KTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLS 1729 (1749)
Q Consensus 1652 ~~~~~~~~~~~~~~~-~~-~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~~s~~~~~a~~l~ 1729 (1749)
..+..+|+|..++.. .. .|+||.+|+.|||++||+.||+|+||....+.+.|+..+|.||++||.+...++.+++.++
T Consensus 5 ~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~~~ 84 (640)
T KOG1474|consen 5 RKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQSLE 84 (640)
T ss_pred ccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccccch
Confidence 457789999999884 33 4999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCc
Q 000270 1730 DLVTRTLSSLKAPQ 1743 (1749)
Q Consensus 1730 ~~~~~~l~~~~~~~ 1743 (1749)
+.|..++...+...
T Consensus 85 ~~~~~~~~~~~~~~ 98 (640)
T KOG1474|consen 85 KLFPKKLRSMPSDE 98 (640)
T ss_pred hhcccccccccccc
Confidence 99998887776643
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0048 Score=79.39 Aligned_cols=110 Identities=13% Similarity=0.063 Sum_probs=71.3
Q ss_pred CCEEEEEeCCcEEEEEECCCCeEEEEEccCCC------CeE--EEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCC
Q 000270 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHEG------DIT--DLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGH 326 (1749)
Q Consensus 255 G~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~------~Vt--sLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gH 326 (1749)
+..|+.++.++.|.-.|..+|+.+-.+..... .+. .+++. ++..++.++.+|.|.-+|..+|+.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 44566777789999999999998877653322 110 11111 2257778888999999999999998776533
Q ss_pred CCc-----e-EEEEeccCCCcceEEEeec---------CCCcEEEEEcCCCcccceeec
Q 000270 327 TAA-----V-TAIAFSPRPGSVYQLLSSS---------DDGTCRIWDARYSQFSPRIYI 370 (1749)
Q Consensus 327 s~~-----V-tsIaFSPdg~~~~~LaSgS---------~DGtIrIWDl~tg~~l~~l~~ 370 (1749)
... + .+..+.. . .++.++ .+|.|..+|..+|+.+.....
T Consensus 140 ~~~~~~~~i~ssP~v~~--~---~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 140 DQVPPGYTMTGAPTIVK--K---LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred CCcCcceEecCCCEEEC--C---EEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 221 1 1112221 1 344443 468899999999998877654
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.011 Score=67.16 Aligned_cols=109 Identities=13% Similarity=0.022 Sum_probs=78.6
Q ss_pred CCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEE
Q 000270 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIA 334 (1749)
Q Consensus 255 G~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIa 334 (1749)
..+++.|+..+.+.--|..+|.++..-. -...|.+-+.- -|.+++.|...|.+.+.++.+|.....+.....--....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 4678889999999999999998776522 12333333322 467899999999999999999987776653322212334
Q ss_pred eccCCCcceEEEeecCCCcEEEEEcCCCccccee
Q 000270 335 FSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRI 368 (1749)
Q Consensus 335 FSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l 368 (1749)
..+++. ++..|+.|+.....|..+..++...
T Consensus 101 ~d~~~g---lIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 101 CDFDGG---LIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred EcCCCc---eEEEecCCCcEEEecccccceEEec
Confidence 455665 8999999999999999887776654
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.1e-05 Score=64.46 Aligned_cols=39 Identities=38% Similarity=0.708 Sum_probs=37.2
Q ss_pred CeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEE
Q 000270 275 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1749)
Q Consensus 275 g~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWD 313 (1749)
|+++.++.+|.+.|++|+|+|++.+|++|+.|++|+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 468899999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0014 Score=75.80 Aligned_cols=202 Identities=13% Similarity=0.125 Sum_probs=105.5
Q ss_pred CceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCC
Q 000270 393 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472 (1749)
Q Consensus 393 ~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~ 472 (1749)
.+-..++||||+.+||.+...|+|++||+.....- ...+.. .....-...|..+.|.....
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~--~~~~d~~~Aiagl~Fl~~~~---------------- 104 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAM--SFPGDLSDAIAGLIFLEYKK---------------- 104 (282)
T ss_pred chheEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCccc--ccCCccccceeeeEeecccc----------------
Confidence 34568999999999999999999999999532110 000100 00011123455555543210
Q ss_pred cccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccc-cCCCCCeeEEEEcCC
Q 000270 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI-LPTPRGVNMIVWSLD 551 (1749)
Q Consensus 473 ~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l-~~h~~~VtsVafSPD 551 (1749)
...| ...|++-..+|.++-|-+..+....-...+. ..+ .....+|++++|+|.
T Consensus 105 --s~~w--s~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hs----------------------fsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 105 --SAQW--SYELLVINYRGQLRSYLVSVGTNQGYQENHS----------------------FSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred --cccc--ceeEEEEeccceeeeEEEEcccCCcceeeEE----------------------EEecccCCCceeEEEEcCC
Confidence 0011 1256666788888877654322111111111 111 223568999999999
Q ss_pred CCEEEEEeCCC-----------eEEEEECCCCceEEEec-CCCCCeEEEEEcCCCCcEEEEEeCCC-----cEEEEeCCC
Q 000270 552 NRFVLAAIMDC-----------RICVWNAADGSLVHSLT-GHTESTYVLDVHPFNPRIAMSAGYDG-----KTIVWDIWE 614 (1749)
Q Consensus 552 G~~LATGs~DG-----------tI~VWDl~tgklv~tL~-gH~~~VtsLafSPdd~rlLaSgs~DG-----tIrVWDl~t 614 (1749)
.++|++|+... -+..|-+-++.+-.... .-...+.. +....+ .++++....
T Consensus 159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~------------~~~~~~~~~~~~~~~fs~~~ 226 (282)
T PF15492_consen 159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITA------------SSKRRGLLRIPSFKFFSRQG 226 (282)
T ss_pred CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccc------------cccccceeeccceeeeeccc
Confidence 99888876321 25556554443322211 11111111 111111 233333323
Q ss_pred CceEEEEeeeeccCCCEEEEEcCCCeEEEEECCCCcc
Q 000270 615 GIPIRIYEISRFRDGASIILSDDVGQLYILNTGQGES 651 (1749)
Q Consensus 615 Gk~l~tl~~~~~sDG~~LAsgd~DG~I~IWdl~tGe~ 651 (1749)
...-..+...-.+||+.||+...+|.|.+|++-.-..
T Consensus 227 ~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 227 QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred cCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence 2333445555667888888888888888888755433
|
|
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=97.92 E-value=9.2e-06 Score=104.84 Aligned_cols=84 Identities=18% Similarity=0.332 Sum_probs=78.1
Q ss_pred ccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHH
Q 000270 1657 QYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTL 1736 (1749)
Q Consensus 1657 ~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~~s~~~~~a~~l~~~~~~~l 1736 (1749)
.-.|.++....+.||||.+|+.||++..|++++++..|.+.+++..|++++|.||++||+.+|.++.-|..|.++|....
T Consensus 1048 ~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~~egs~~y~d~~~l~~~~~~~~ 1127 (1157)
T KOG0386|consen 1048 SEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTYNEEGSRVYEDAIVLQSVFKSAR 1127 (1157)
T ss_pred chhcccCcccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhhhccCCceechhHHHHHHHHhhhH
Confidence 44677777888999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred hcCC
Q 000270 1737 SSLK 1740 (1749)
Q Consensus 1737 ~~~~ 1740 (1749)
.++.
T Consensus 1128 ~~~~ 1131 (1157)
T KOG0386|consen 1128 QEIS 1131 (1157)
T ss_pred HHHh
Confidence 6665
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.003 Score=75.71 Aligned_cols=282 Identities=13% Similarity=0.116 Sum_probs=161.2
Q ss_pred cEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeC----------CCeEEEEECCCCceEEEec--C-CCC---
Q 000270 265 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN----------DCIIRVWRLPDGLPISVLR--G-HTA--- 328 (1749)
Q Consensus 265 GtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~----------DGtIrVWDl~tgk~l~tL~--g-Hs~--- 328 (1749)
+.|.|+|..+++.+..+.. +-.-.+.++|+++.+.+++. .-.|.+||..+-.+...+. . |..
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 5899999999999888763 33345778999998887532 2469999999987776442 2 111
Q ss_pred -ceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCC-CCE
Q 000270 329 -AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN-GTV 406 (1749)
Q Consensus 329 -~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPD-G~~ 406 (1749)
....++++.|++.. ++.=.+--.+|.|.|+...+.+..+..+. |.-.-|. ..-
T Consensus 95 ~~~~~~~ls~dgk~~-~V~N~TPa~SVtVVDl~~~kvv~ei~~PG------------------------C~~iyP~~~~~ 149 (342)
T PF06433_consen 95 PYKNMFALSADGKFL-YVQNFTPATSVTVVDLAAKKVVGEIDTPG------------------------CWLIYPSGNRG 149 (342)
T ss_dssp --GGGEEE-TTSSEE-EEEEESSSEEEEEEETTTTEEEEEEEGTS------------------------EEEEEEEETTE
T ss_pred ccccceEEccCCcEE-EEEccCCCCeEEEEECCCCceeeeecCCC------------------------EEEEEecCCCc
Confidence 22345777777621 22223445668888888888777665321 3333332 245
Q ss_pred EEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccc--cCCCEE
Q 000270 407 FVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW--FCHDNI 484 (1749)
Q Consensus 407 LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~--~~~~~L 484 (1749)
|.+-|.||.+.-..+... ++.... + .=.|.++. .+.|.... .....+
T Consensus 150 F~~lC~DGsl~~v~Ld~~--------Gk~~~~---~-----t~~F~~~~---------------dp~f~~~~~~~~~~~~ 198 (342)
T PF06433_consen 150 FSMLCGDGSLLTVTLDAD--------GKEAQK---S-----TKVFDPDD---------------DPLFEHPAYSRDGGRL 198 (342)
T ss_dssp EEEEETTSCEEEEEETST--------SSEEEE---E-----EEESSTTT---------------S-B-S--EEETTTTEE
T ss_pred eEEEecCCceEEEEECCC--------CCEeEe---e-----ccccCCCC---------------cccccccceECCCCeE
Confidence 777778999888877531 111111 1 01233221 01111111 112456
Q ss_pred EEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeC---C
Q 000270 485 VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM---D 561 (1749)
Q Consensus 485 aSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~---D 561 (1749)
+-.+..|.|+--|+...... +...+.+.. .. ...-.=-+++...+++++....|++.-. +
T Consensus 199 ~F~Sy~G~v~~~dlsg~~~~-----~~~~~~~~t-----------~~-e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~ 261 (342)
T PF06433_consen 199 YFVSYEGNVYSADLSGDSAK-----FGKPWSLLT-----------DA-EKADGWRPGGWQLIAYHAASGRLYVLMHQGGE 261 (342)
T ss_dssp EEEBTTSEEEEEEETTSSEE-----EEEEEESS------------HH-HHHTTEEE-SSS-EEEETTTTEEEEEEEE--T
T ss_pred EEEecCCEEEEEeccCCccc-----ccCcccccC-----------cc-ccccCcCCcceeeeeeccccCeEEEEecCCCC
Confidence 66788888888887754311 111111000 00 0000001234566888876666555432 1
Q ss_pred C-------eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEEE-eCCCcEEEEeCCCCceEEEEe
Q 000270 562 C-------RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA-GYDGKTIVWDIWEGIPIRIYE 622 (1749)
Q Consensus 562 G-------tI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaSg-s~DGtIrVWDl~tGk~l~tl~ 622 (1749)
+ .|.+||+.+++.+..+..- ..+.+|+++.++.-+|++. ..++.|.|||..+|+.++++.
T Consensus 262 gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 262 GSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp T-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred CCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 1 4899999999999988742 3477899998666566554 468999999999999999886
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.1e-05 Score=103.47 Aligned_cols=78 Identities=14% Similarity=0.223 Sum_probs=70.6
Q ss_pred ccccccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHH
Q 000270 1653 RVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSD 1730 (1749)
Q Consensus 1653 ~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~~s~~~~~a~~l~~ 1730 (1749)
++...|+|...+.....|+||.+|+.||||+|+.++|.+.-|.+.+.|+.|+++||.||++||...+..+..=..+..
T Consensus 300 ~~~~s~~~~~kvs~~~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~~~~~~~~vv~~ 377 (720)
T KOG1472|consen 300 RTEHSTPFLEKVSKEDAPNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEESHGLIEFAVIMN 377 (720)
T ss_pred ccccccccccCCChhhCcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccchhhhhhhhhhc
Confidence 578899999999999999999999999999999999999999999999999999999999999988766655444433
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00032 Score=89.31 Aligned_cols=149 Identities=15% Similarity=0.203 Sum_probs=108.4
Q ss_pred CCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEE
Q 000270 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISV 322 (1749)
Q Consensus 243 ~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~t 322 (1749)
.+.++|++++ +++||-|+.+|.|++.+... .. .+...|+.. .-+|.+++|||.||+|.|-.+-+++...+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 3567888887 67999999999999999874 33 444445554 55899999999999999999988887776
Q ss_pred ecCCCCceEEEEeccC--CCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEE
Q 000270 323 LRGHTAAVTAIAFSPR--PGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 400 (1749)
Q Consensus 323 L~gHs~~VtsIaFSPd--g~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~Laf 400 (1749)
+. ...++.+|+++|+ -.....+++|+.-| +.++.-.=-...... ......+.|.++.|
T Consensus 109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v------------------~l~~~eG~I~~i~W 168 (846)
T KOG2066|consen 109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV------------------VLSEGEGPIHSIKW 168 (846)
T ss_pred Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce------------------eeecCccceEEEEe
Confidence 65 4578999999998 22234789999988 777642210000000 12345678999999
Q ss_pred cCCCCEEEEecCCCcEEEEeCCCC
Q 000270 401 NANGTVFVTGSSDTLARVWNACKP 424 (1749)
Q Consensus 401 SPDG~~LaSGs~DGtVrIWDl~t~ 424 (1749)
. |.++|-++.+| |+|||+.+.
T Consensus 169 ~--g~lIAWand~G-v~vyd~~~~ 189 (846)
T KOG2066|consen 169 R--GNLIAWANDDG-VKVYDTPTR 189 (846)
T ss_pred c--CcEEEEecCCC-cEEEecccc
Confidence 4 77888887655 899999653
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00017 Score=92.15 Aligned_cols=167 Identities=16% Similarity=0.238 Sum_probs=123.1
Q ss_pred cccceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeC-----
Q 000270 231 QKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN----- 305 (1749)
Q Consensus 231 ~~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~----- 305 (1749)
.+.+..+...--.+.|+-+. .++++|.+|...|+|.+-|..+.+.++++.+|++.|.++.. .|++|+++|.
T Consensus 165 ~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~ 240 (1118)
T KOG1275|consen 165 NTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRY 240 (1118)
T ss_pred ccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccc
Confidence 33444444444444455444 46889999999999999999999999999999999988776 5888888865
Q ss_pred ----CCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCc-ccceeecCCCCCcccCC
Q 000270 306 ----DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ-FSPRIYIPRPSDAVAGR 380 (1749)
Q Consensus 306 ----DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~-~l~~l~~~~~~~~~~g~ 380 (1749)
|..|+|||++..+.+.-+.-+-++ .-+.|+|.-. ..+++++..|.+.+-|..+-. ....+
T Consensus 241 ~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~--t~~~V~S~sGq~q~vd~~~lsNP~~~~------------ 305 (1118)
T KOG1275|consen 241 NLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLT--TRLAVTSQSGQFQFVDTATLSNPPAGV------------ 305 (1118)
T ss_pred cccccchhhhhhhhhhhccCCcccccCc-hhhhhccccc--ceEEEEecccceeeccccccCCCccce------------
Confidence 457899999888777666655444 5678888644 378889999999998843211 10111
Q ss_pred CCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeC
Q 000270 381 NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA 421 (1749)
Q Consensus 381 ~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl 421 (1749)
....+.+..+..+++|++|..+|.|..+|.|.+|.-
T Consensus 306 -----~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 306 -----KMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred -----eEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 011223445899999999999999999999999983
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0017 Score=77.32 Aligned_cols=94 Identities=18% Similarity=0.156 Sum_probs=80.5
Q ss_pred EEEEECCCCeEEEEEccCCCCeEEEEEcCCCc-EEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEE
Q 000270 267 VKIWSMETAYCLASCRGHEGDITDLAVSSNNA-LVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQL 345 (1749)
Q Consensus 267 VrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~-lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~L 345 (1749)
|++.+..+.+...-+.+|...|.+|+|||... +|..++.+.+|+|.|+.+..++..+..+ ..+++++|.-+.. +++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~--h~I 251 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDER--HVI 251 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCc--cee
Confidence 66666666666666778889999999999776 8889999999999999999888888877 8899999998874 589
Q ss_pred EeecCCCcEEEEEcCCCc
Q 000270 346 LSSSDDGTCRIWDARYSQ 363 (1749)
Q Consensus 346 aSgS~DGtIrIWDl~tg~ 363 (1749)
..|...|.|.|||++...
T Consensus 252 YaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred EEeccCceEEEEEccCCC
Confidence 999999999999998654
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=3.9e-05 Score=89.12 Aligned_cols=127 Identities=17% Similarity=0.293 Sum_probs=102.3
Q ss_pred CCCEEEEEECCCCCEEEEEeCCcEEEEEECCCC-----eEEEEEccCCCCeEEEEEcC-CCcEEEEEeCCCeEEEEECCC
Q 000270 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA-----YCLASCRGHEGDITDLAVSS-NNALVASASNDCIIRVWRLPD 316 (1749)
Q Consensus 243 ~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg-----~~l~tL~gHs~~VtsLafSP-Dg~lLASGS~DGtIrVWDl~t 316 (1749)
.+.|.++.|...+.+|+.|+..|.|.+.|+..+ .+...| -|.+.|++|.... ++++|++.+.+|+|++||++-
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~ 330 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA 330 (425)
T ss_pred chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence 456889999999999999999999999999754 344444 4899999998877 788999999999999999976
Q ss_pred Cce---EEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecC
Q 000270 317 GLP---ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIP 371 (1749)
Q Consensus 317 gk~---l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~ 371 (1749)
-++ +....||...-.-+-++-+.... .+++++.|...+||.++.+..+.++..+
T Consensus 331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred hhcccceeeeecccccccccccccccccc-eEEEccCeeEEEEEecccCceeeccCCC
Confidence 666 88888987665555554433222 7888999999999999999988777543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.001 Score=84.86 Aligned_cols=160 Identities=19% Similarity=0.198 Sum_probs=111.5
Q ss_pred EccCCCCEEEEEECC-------------CCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCC-----CcEE
Q 000270 239 VRGHRNAVYCAIFDR-------------SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSN-----NALV 300 (1749)
Q Consensus 239 L~GH~~~Vt~VaFSP-------------DG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPD-----g~lL 300 (1749)
|..|.+.|+-..+.- +|.+++|||.||+|.|-.+-+.+...++. ...++.+++++|+ .+.+
T Consensus 54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~f 132 (846)
T KOG2066|consen 54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQF 132 (846)
T ss_pred eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhhe
Confidence 445555555554444 49999999999999999999888777765 4578999999997 5689
Q ss_pred EEEeCCCeEEEEECC--CCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCccc
Q 000270 301 ASASNDCIIRVWRLP--DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA 378 (1749)
Q Consensus 301 ASGS~DGtIrVWDl~--tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~ 378 (1749)
++|+.-| +.++.-. ..+....+....|+|.++.|.-+ ++|-++.+| |+|||+.+++.+..+..+...
T Consensus 133 v~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~-----lIAWand~G-v~vyd~~~~~~l~~i~~p~~~---- 201 (846)
T KOG2066|consen 133 VSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN-----LIAWANDDG-VKVYDTPTRQRLTNIPPPSQS---- 201 (846)
T ss_pred eecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc-----EEEEecCCC-cEEEeccccceeeccCCCCCC----
Confidence 9999988 7776421 11212246667899999999864 778787777 899999988866655332210
Q ss_pred CCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCC
Q 000270 379 GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNAC 422 (1749)
Q Consensus 379 g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~ 422 (1749)
.........+.|.++.+ |+.| ...+|+|..++
T Consensus 202 ----------~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 202 ----------VRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIK 233 (846)
T ss_pred ----------CCcccCCCceEecCCCe-EEEe-cCCeEEEEEEe
Confidence 11122234578887654 4444 45678888886
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.014 Score=74.92 Aligned_cols=108 Identities=12% Similarity=0.114 Sum_probs=71.0
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEe-CCCeEEEEECCCCce------------EEEecCCCCCeEEEEEcCCCCcEEEEEeC
Q 000270 537 LPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAADGSL------------VHSLTGHTESTYVLDVHPFNPRIAMSAGY 603 (1749)
Q Consensus 537 ~~h~~~VtsVafSPDG~~LATGs-~DGtI~VWDl~tgkl------------v~tL~gH~~~VtsLafSPdd~rlLaSgs~ 603 (1749)
.........|++||||+++++++ .+.+|.|+|+.+.+. +.+..--.+ -...+|.+ ++....|---
T Consensus 317 IPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG-PLHTaFDg-~G~aytslf~ 394 (635)
T PRK02888 317 VPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG-PLHTAFDG-RGNAYTTLFL 394 (635)
T ss_pred EECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC-cceEEECC-CCCEEEeEee
Confidence 33455677899999999988776 488999999987542 333332222 34678888 4567778888
Q ss_pred CCcEEEEeCCC----------CceEEEEeeee-------------ccCCCEEEEEcCCCeEEEEEC
Q 000270 604 DGKTIVWDIWE----------GIPIRIYEISR-------------FRDGASIILSDDVGQLYILNT 646 (1749)
Q Consensus 604 DGtIrVWDl~t----------Gk~l~tl~~~~-------------~sDG~~LAsgd~DG~I~IWdl 646 (1749)
|..|..|++.+ ...+..+..+. .+||++|++...--.=+...+
T Consensus 395 dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~v 460 (635)
T PRK02888 395 DSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKFSKDRFLPV 460 (635)
T ss_pred cceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccccccccccCC
Confidence 99999999876 23444443321 128888888765333333333
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.01 Score=73.21 Aligned_cols=286 Identities=15% Similarity=0.150 Sum_probs=145.9
Q ss_pred CCCCCEEEEE---------eCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEE
Q 000270 252 DRSGRYVITG---------SDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISV 322 (1749)
Q Consensus 252 SPDG~~LATG---------S~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~t 322 (1749)
||||++++.. +..+.+.|||+.+++....... ...+....|||+|+.||... ++.|.++++.++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 6888888774 2356899999999765544333 67889999999999999886 56899999887754432
Q ss_pred ec-C-------C---------CCceEEEEeccCCCcceEEEee-cCCCcEEEEEcC---CCc----ccceeecCCCCCcc
Q 000270 323 LR-G-------H---------TAAVTAIAFSPRPGSVYQLLSS-SDDGTCRIWDAR---YSQ----FSPRIYIPRPSDAV 377 (1749)
Q Consensus 323 L~-g-------H---------s~~VtsIaFSPdg~~~~~LaSg-S~DGtIrIWDl~---tg~----~l~~l~~~~~~~~~ 377 (1749)
-. | - -+.-.++.||||++ +||.. ..+..|..+.+- ... ....+..+.+....
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~---~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~n 155 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSK---YLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPN 155 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSS---EEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS--
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCC---EEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcC
Confidence 21 2 0 11235688999987 45443 334444443321 111 11112212111110
Q ss_pred c----------CCCCCCCCC---CCCCCCceEEEEEcCCCCEEEEe--cCCC---cEEEEeCCCCCCCCCCCCCcceeee
Q 000270 378 A----------GRNMAPSSS---AGPQSHQIFCCAFNANGTVFVTG--SSDT---LARVWNACKPNTDDSDQPNHEIDVL 439 (1749)
Q Consensus 378 ~----------g~~~~~~~s---~~~h~~~Vt~LafSPDG~~LaSG--s~DG---tVrIWDl~t~~~~~s~~~~~~i~~l 439 (1749)
. +........ .......+..+.|.+++..|++. ..+. .+.++|+.++.. ..+. .
T Consensus 156 p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~-------~~~~-~ 227 (353)
T PF00930_consen 156 PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET-------RVVL-E 227 (353)
T ss_dssp -EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC-------EEEE-E
T ss_pred CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce-------eEEE-E
Confidence 0 000000000 12345668899999998844432 2222 355566644221 1111 1
Q ss_pred cCCCCCe---EEEEEc-CCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccc
Q 000270 440 SGHENDV---NYVQFS-GCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYH 515 (1749)
Q Consensus 440 ~gH~~~V---~sVafS-pdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~ 515 (1749)
....+.| ..+.|. +++ ..+|.....+|.-.||-+...
T Consensus 228 e~~~~Wv~~~~~~~~~~~~~-------------------------~~~l~~s~~~G~~hly~~~~~-------------- 268 (353)
T PF00930_consen 228 ETSDGWVDVYDPPHFLGPDG-------------------------NEFLWISERDGYRHLYLYDLD-------------- 268 (353)
T ss_dssp EESSSSSSSSSEEEE-TTTS-------------------------SEEEEEEETTSSEEEEEEETT--------------
T ss_pred ecCCcceeeecccccccCCC-------------------------CEEEEEEEcCCCcEEEEEccc--------------
Confidence 1111111 122222 222 245556667777666644421
Q ss_pred cCCCCCCCCCCCCCCCCcccccCCCCCee-EEEEcCCCCEEE-EEeC----CCeEEEEECCCCceEEEecCCCCCeEEEE
Q 000270 516 LKVPPPPMPPQPPRGGPRQRILPTPRGVN-MIVWSLDNRFVL-AAIM----DCRICVWNAADGSLVHSLTGHTESTYVLD 589 (1749)
Q Consensus 516 l~v~~~~~~~~~~~g~~i~~l~~h~~~Vt-sVafSPDG~~LA-TGs~----DGtI~VWDl~tgklv~tL~gH~~~VtsLa 589 (1749)
++....+....-.|+ -+.|+++++.|. +|.. ...|+.-++..+..+..|+...+.-..+.
T Consensus 269 --------------~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~ 334 (353)
T PF00930_consen 269 --------------GGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSAS 334 (353)
T ss_dssp --------------SSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEE
T ss_pred --------------ccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEE
Confidence 111222333334464 477888877665 4443 23566677773555566665544447999
Q ss_pred EcCCCCcEEEEEeC
Q 000270 590 VHPFNPRIAMSAGY 603 (1749)
Q Consensus 590 fSPdd~rlLaSgs~ 603 (1749)
|||++..++.+++.
T Consensus 335 ~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 335 FSPDGKYYVDTYSG 348 (353)
T ss_dssp E-TTSSEEEEEEES
T ss_pred ECCCCCEEEEEEcC
Confidence 99966666666654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0017 Score=77.45 Aligned_cols=93 Identities=20% Similarity=0.287 Sum_probs=74.8
Q ss_pred EEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCC
Q 000270 309 IRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 388 (1749)
Q Consensus 309 IrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~ 388 (1749)
|++.+-.+.+.+..+.+|...|..++|+|...+ ++..++.+..|.|.|+++..++.....
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~G--Ll~~asl~nkiki~dlet~~~vssy~a------------------ 234 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEG--LLGLASLGNKIKIMDLETSCVVSSYIA------------------ 234 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccc--eeeeeccCceEEEEecccceeeeheec------------------
Confidence 666665566666677889999999999998753 688899999999999998876665532
Q ss_pred CCCCCceEEEEEcCCC-CEEEEecCCCcEEEEeCCCC
Q 000270 389 GPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKP 424 (1749)
Q Consensus 389 ~~h~~~Vt~LafSPDG-~~LaSGs~DGtVrIWDl~t~ 424 (1749)
...+++++|.-|. .+|.+|...|.|.|||++..
T Consensus 235 ---~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 235 ---YNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred ---cCCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 2569999998765 57888999999999999764
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.11 Score=67.44 Aligned_cols=110 Identities=14% Similarity=0.101 Sum_probs=69.1
Q ss_pred CCEEEEEeCCcEEEEEECCCCeEEEEEccCC-CCeEE----------EEEcCCCcEEEEEeCCCeEEEEECCCCceEEEe
Q 000270 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHE-GDITD----------LAVSSNNALVASASNDCIIRVWRLPDGLPISVL 323 (1749)
Q Consensus 255 G~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs-~~Vts----------LafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL 323 (1749)
+..|+.++.++.|.-.|..+|+.+-.+.... ..+.. +++ .+..|+.++.|+.|.-.|..+|+.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4467777778889999999999887765311 11111 122 2345677888999999999999988765
Q ss_pred cCC--C--CceEEEEeccCCCcceEEEeec------CCCcEEEEEcCCCcccceeec
Q 000270 324 RGH--T--AAVTAIAFSPRPGSVYQLLSSS------DDGTCRIWDARYSQFSPRIYI 370 (1749)
Q Consensus 324 ~gH--s--~~VtsIaFSPdg~~~~~LaSgS------~DGtIrIWDl~tg~~l~~l~~ 370 (1749)
... . ..+++--..-++ .++++. .+|.|..+|+.+|+.+..+..
T Consensus 147 ~~~~~~~~~~~tssP~v~~g----~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG----KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred ccccccccccccCCcEEECC----EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 421 1 011111011122 344443 368999999999998877643
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00042 Score=87.54 Aligned_cols=70 Identities=13% Similarity=0.186 Sum_probs=63.3
Q ss_pred EEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECC
Q 000270 246 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP 315 (1749)
Q Consensus 246 Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~ 315 (1749)
+++++|+|..-.||.|-.-|.+.+|...+.+.-.....|..+|..+.||++|..|+++..-|.|.+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5569999999999999999999999998877666667899999999999999999999999999999864
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.055 Score=61.81 Aligned_cols=103 Identities=12% Similarity=0.045 Sum_probs=72.4
Q ss_pred CCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEE
Q 000270 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIA 334 (1749)
Q Consensus 255 G~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIa 334 (1749)
|++++.|+..|.+++.++.||.....+..-..--......+++.+|..|+.|++....|..+..++...+...+...+-+
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~ 142 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPV 142 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccce
Confidence 67899999999999999999987777654322222344567899999999999999999999998888765444444445
Q ss_pred eccCCCcceEEEeecCCCcEEEEEcC
Q 000270 335 FSPRPGSVYQLLSSSDDGTCRIWDAR 360 (1749)
Q Consensus 335 FSPdg~~~~~LaSgS~DGtIrIWDl~ 360 (1749)
..|-.. .|..+...|.|.--...
T Consensus 143 i~~g~~---sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 143 IAPGDG---SLYAAITAGAVLAVTKN 165 (354)
T ss_pred ecCCCc---eEEEEeccceEEEEccC
Confidence 555222 34445555555444433
|
|
| >KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] | Back alignment and domain information |
|---|
Probab=97.63 E-value=6.2e-05 Score=99.50 Aligned_cols=87 Identities=14% Similarity=0.285 Sum_probs=76.9
Q ss_pred HHHHhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHH
Q 000270 1646 KLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKI 1725 (1749)
Q Consensus 1646 ~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~~s~~~~~a 1725 (1749)
.+...+......++|+.|++...++|||.||..||||.|+++.+..+-|..-+.|..|+.+|++|..+||+|.+.+.+.+
T Consensus 1268 ~i~n~~~~~~~t~~f~~Pv~~k~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~~~~t~~~ 1347 (1563)
T KOG0008|consen 1268 TIINQARSSPNTYPFPTPVNAKEVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPLASLTRQQ 1347 (1563)
T ss_pred HHHHHHhcCCCCcCCCCccchhhccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCchHHHHHHH
Confidence 33334444578899999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHH
Q 000270 1726 KRLSDLV 1732 (1749)
Q Consensus 1726 ~~l~~~~ 1732 (1749)
..+-...
T Consensus 1348 q~mls~~ 1354 (1563)
T KOG0008|consen 1348 QSMLSLC 1354 (1563)
T ss_pred HHHHHHH
Confidence 8765443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0048 Score=79.48 Aligned_cols=223 Identities=10% Similarity=0.082 Sum_probs=133.5
Q ss_pred EEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCc-eEEEEeccCCCcceEEEeecCCC-----cEEEEEcCCCccc
Q 000270 292 AVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAA-VTAIAFSPRPGSVYQLLSSSDDG-----TCRIWDARYSQFS 365 (1749)
Q Consensus 292 afSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~-VtsIaFSPdg~~~~~LaSgS~DG-----tIrIWDl~tg~~l 365 (1749)
+|++.+..+|.|+.+|.|.+.+ .+-+.+..++.+... |..+....... +|++.+.|+ .|+||++......
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~---~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQN---FLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCce---EEEEEeecCCCCceEEEEecccccCCC
Confidence 3577888999999999887776 233444677777666 44443333322 777777665 4899998754211
Q ss_pred c--eeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCC
Q 000270 366 P--RIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE 443 (1749)
Q Consensus 366 ~--~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~ 443 (1749)
. ... +..............++.+++.+.+-..+|+|-.+|.|..+.-.-.. ..+........-.
T Consensus 106 ~sP~c~---------~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~R-----Drgsr~~~~~~~~ 171 (933)
T KOG2114|consen 106 NSPQCL---------YEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILR-----DRGSRQDYSHRGK 171 (933)
T ss_pred CCccee---------eeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchh-----ccccceeeeccCC
Confidence 1 000 00000000111235568899999999999999999999998642111 1111222233445
Q ss_pred CCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCC
Q 000270 444 NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPM 523 (1749)
Q Consensus 444 ~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~ 523 (1749)
.+|+.+++..++ ..++-...-..|.+|.+.. +
T Consensus 172 ~pITgL~~~~d~--------------------------~s~lFv~Tt~~V~~y~l~g-r--------------------- 203 (933)
T KOG2114|consen 172 EPITGLALRSDG--------------------------KSVLFVATTEQVMLYSLSG-R--------------------- 203 (933)
T ss_pred CCceeeEEecCC--------------------------ceeEEEEecceeEEEEecC-C---------------------
Confidence 689999998766 2212222334677777662 1
Q ss_pred CCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCCCeEE
Q 000270 524 PPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT-GHTESTYV 587 (1749)
Q Consensus 524 ~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~-gH~~~Vts 587 (1749)
+.....+..+...++|.+|++....+++|+. ..|.+|+....++-.+|. ||......
T Consensus 204 ------~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk~~~~ 261 (933)
T KOG2114|consen 204 ------TPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKKEMLV 261 (933)
T ss_pred ------CcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeEEEEE
Confidence 1112234556677888888876554555543 569999988666666776 66654333
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0073 Score=76.62 Aligned_cols=115 Identities=23% Similarity=0.265 Sum_probs=90.6
Q ss_pred CCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEE-EccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceE--
Q 000270 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS-CRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI-- 320 (1749)
Q Consensus 244 ~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~t-L~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l-- 320 (1749)
..|.--+++..+.+|+.|+.-|.|.+|+-.++..... ..+-.+.+..+.++++..++|.|+..|.|.|+-+..+.+.
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 3455556777899999999999999999887765433 3345566777888999999999999999999987654221
Q ss_pred ---EEe-cCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCC
Q 000270 321 ---SVL-RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY 361 (1749)
Q Consensus 321 ---~tL-~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~t 361 (1749)
..+ ..|...|++++|++++. .|++|...|.|.+-.+..
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~~---k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNGM---KLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eeeccccccCCceEEEEEeccccc---EEeecCCCceEEEEEech
Confidence 111 24788999999999987 899999999999988876
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.028 Score=72.50 Aligned_cols=97 Identities=11% Similarity=0.070 Sum_probs=66.9
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCcEEEE-----------------EeCCCcEEEEeCCCCc
Q 000270 554 FVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMS-----------------AGYDGKTIVWDIWEGI 616 (1749)
Q Consensus 554 ~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSPdd~rlLaS-----------------gs~DGtIrVWDl~tGk 616 (1749)
.+++++.+|.+...|..+|+.+...... ...++.+| +.+++. ...+|.|.-.|+.+|+
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~ 377 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK 377 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence 6788889999999999999998765421 01123333 222221 1246778888888888
Q ss_pred eEEEEeee-----------e--cc---CCCEEEEEcCCCeEEEEECCCCcccccc
Q 000270 617 PIRIYEIS-----------R--FR---DGASIILSDDVGQLYILNTGQGESQKDA 655 (1749)
Q Consensus 617 ~l~tl~~~-----------~--~s---DG~~LAsgd~DG~I~IWdl~tGe~~k~~ 655 (1749)
.+-..... . .+ .+..|++++.+|.|+.+|..+|+.+-..
T Consensus 378 ~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~ 432 (488)
T cd00216 378 VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKF 432 (488)
T ss_pred EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEE
Confidence 77665543 1 11 6788889999999999999999877443
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.021 Score=67.96 Aligned_cols=220 Identities=15% Similarity=0.178 Sum_probs=132.3
Q ss_pred eEEEEeccCCCcceEEEeecCCCc-EEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEE
Q 000270 330 VTAIAFSPRPGSVYQLLSSSDDGT-CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFV 408 (1749)
Q Consensus 330 VtsIaFSPdg~~~~~LaSgS~DGt-IrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~La 408 (1749)
...++.+|... ..++.+-.-|+ +.+||..+++....+..+. .....-.-+||+||++|+
T Consensus 7 gH~~a~~p~~~--~avafaRRPG~~~~v~D~~~g~~~~~~~a~~------------------gRHFyGHg~fs~dG~~Ly 66 (305)
T PF07433_consen 7 GHGVAAHPTRP--EAVAFARRPGTFALVFDCRTGQLLQRLWAPP------------------GRHFYGHGVFSPDGRLLY 66 (305)
T ss_pred ccceeeCCCCC--eEEEEEeCCCcEEEEEEcCCCceeeEEcCCC------------------CCEEecCEEEcCCCCEEE
Confidence 44677788543 25666666665 6679999998776653211 111122468999999999
Q ss_pred Eec-----CCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCE
Q 000270 409 TGS-----SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDN 483 (1749)
Q Consensus 409 SGs-----~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~ 483 (1749)
+.- ..|.|-|||... ....+..+..|.-.-..+.+.|++ ..
T Consensus 67 tTEnd~~~g~G~IgVyd~~~--------~~~ri~E~~s~GIGPHel~l~pDG--------------------------~t 112 (305)
T PF07433_consen 67 TTENDYETGRGVIGVYDAAR--------GYRRIGEFPSHGIGPHELLLMPDG--------------------------ET 112 (305)
T ss_pred EeccccCCCcEEEEEEECcC--------CcEEEeEecCCCcChhhEEEcCCC--------------------------CE
Confidence 863 358999999962 245566777777777778888887 23
Q ss_pred EEEEeC-------CCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCccc--c--cCCCCCeeEEEEcCCC
Q 000270 484 IVTCSR-------DGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR--I--LPTPRGVNMIVWSLDN 552 (1749)
Q Consensus 484 LaSgS~-------DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~--l--~~h~~~VtsVafSPDG 552 (1749)
|+.+-. .|..++ ++.+.+.. ........+..+.+ + .-|...|..+++.++|
T Consensus 113 LvVANGGI~Thpd~GR~kL-Nl~tM~ps-----------------L~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G 174 (305)
T PF07433_consen 113 LVVANGGIETHPDSGRAKL-NLDTMQPS-----------------LVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDG 174 (305)
T ss_pred EEEEcCCCccCcccCceec-ChhhcCCc-----------------eEEEecCCCceeeeeecCccccccceeeEEecCCC
Confidence 333210 111221 11111000 00000112222222 2 2256679999999999
Q ss_pred CEEEEEeCCC-------eEEEEECCCCceEEEec-------CCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceE
Q 000270 553 RFVLAAIMDC-------RICVWNAADGSLVHSLT-------GHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618 (1749)
Q Consensus 553 ~~LATGs~DG-------tI~VWDl~tgklv~tL~-------gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l 618 (1749)
..++..-..| .|.+++. ++.+..+. .-.+.|-+|+++.++..+++|+-.-+.+.+||..+|+.+
T Consensus 175 ~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 175 TVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLL 252 (305)
T ss_pred cEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEe
Confidence 8777654433 2444443 33232222 234678899999966667788888999999999999998
Q ss_pred EEEee
Q 000270 619 RIYEI 623 (1749)
Q Consensus 619 ~tl~~ 623 (1749)
.....
T Consensus 253 ~~~~l 257 (305)
T PF07433_consen 253 GSVPL 257 (305)
T ss_pred ecccc
Confidence 87653
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0024 Score=81.03 Aligned_cols=107 Identities=15% Similarity=0.182 Sum_probs=85.3
Q ss_pred EEECCCCCEEEEEe----CCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEec
Q 000270 249 AIFDRSGRYVITGS----DDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR 324 (1749)
Q Consensus 249 VaFSPDG~~LATGS----~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~ 324 (1749)
..|+|...++|+++ ..|.|.||- ++|++..-.. -.-.+++++|+|..-+|+.|-.-|.+.||...+.+.-....
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~ 98 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVE 98 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeeecc
Confidence 45788887877765 367888884 4455433221 12336779999999999999999999999988877777777
Q ss_pred CCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcC
Q 000270 325 GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360 (1749)
Q Consensus 325 gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~ 360 (1749)
.|..+|..+.|+++|. .|+++..-|.|.+|...
T Consensus 99 th~a~i~~l~wS~~G~---~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 99 THPAPIQGLDWSHDGT---VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCCCCceeEEecCCCC---eEEEcCCCceeEEEEee
Confidence 8999999999999998 89999999999999876
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.08 Score=66.74 Aligned_cols=107 Identities=13% Similarity=0.113 Sum_probs=65.1
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCC-CCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceE
Q 000270 540 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH-TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618 (1749)
Q Consensus 540 ~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH-~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l 618 (1749)
.+++..|++||+|++||.-..+|.+.|....-.+.+..+... ......+.|+- +..+++. ....|.+.........
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG-~dav~l~--~~~~l~lvg~~~~~~~ 292 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG-NDAVVLS--WEDELLLVGPDGDSIS 292 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC-CCcEEEE--eCCEEEEECCCCCceE
Confidence 357999999999999999999999999987666666666543 34566777866 2223322 2334555443222111
Q ss_pred EEEeeeeccCCCEEEEEcCCCeEEEEECCCCccccccc
Q 000270 619 RIYEISRFRDGASIILSDDVGQLYILNTGQGESQKDAK 656 (1749)
Q Consensus 619 ~tl~~~~~sDG~~LAsgd~DG~I~IWdl~tGe~~k~~~ 656 (1749)
..+ ++..++..--|| |+|+.....+.+...+
T Consensus 293 ~~~------~~~~~l~~E~DG-~riit~~~~~~l~~Vp 323 (410)
T PF04841_consen 293 FWY------DGPVILVSEIDG-VRIITSTSHEFLQRVP 323 (410)
T ss_pred Eec------cCceEEeccCCc-eEEEeCCceEEEEECC
Confidence 111 444555555555 7777665555544443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0068 Score=78.15 Aligned_cols=181 Identities=14% Similarity=0.213 Sum_probs=121.4
Q ss_pred CEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCC-eEEEEEcCCCcEEEEEeCCC-----eEEEEECCCC-
Q 000270 245 AVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD-ITDLAVSSNNALVASASNDC-----IIRVWRLPDG- 317 (1749)
Q Consensus 245 ~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~-VtsLafSPDg~lLASGS~DG-----tIrVWDl~tg- 317 (1749)
.|+| |++.+..+|.|+.+|.|.+.+-. .+.++.|+.+... |+.+-...+..+|++.+.|+ .|+||+++.-
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 5665 67888899999999998888743 3455778888777 55554444446888888774 5999998532
Q ss_pred -----ceEE--EecC-----CCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCC
Q 000270 318 -----LPIS--VLRG-----HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS 385 (1749)
Q Consensus 318 -----k~l~--tL~g-----Hs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~ 385 (1749)
.++. .+.+ ...++.+++.+.+-. .+|+|-.+|.|.++.-+ ..... | ...
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~---~Iv~Gf~nG~V~~~~GD---i~RDr----------g---sr~ 164 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK---TIVCGFTNGLVICYKGD---ILRDR----------G---SRQ 164 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc---EEEEEecCcEEEEEcCc---chhcc----------c---cce
Confidence 3331 1112 356788999998865 89999999999988422 11110 0 000
Q ss_pred CCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCC
Q 000270 386 SSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCA 455 (1749)
Q Consensus 386 ~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg 455 (1749)
........+|+.++|..++..++.+..-..|.+|.+.. ++ .....+..|...++|..+++..
T Consensus 165 ~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g-------r~-p~~~~ld~~G~~lnCss~~~~t 226 (933)
T KOG2114|consen 165 DYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG-------RT-PSLKVLDNNGISLNCSSFSDGT 226 (933)
T ss_pred eeeccCCCCceeeEEecCCceeEEEEecceeEEEEecC-------CC-cceeeeccCCccceeeecCCCC
Confidence 11133567899999999988633333456789999852 11 2345577888899999998754
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0016 Score=83.74 Aligned_cols=185 Identities=12% Similarity=0.151 Sum_probs=136.1
Q ss_pred CCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEE
Q 000270 254 SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAI 333 (1749)
Q Consensus 254 DG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsI 333 (1749)
++..++.|+-...+..+|+.+++..+...-..+.|+-|.. ++++|.+|...|+|.+-|..+.+.+.++..|++.|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 4556778888778889999988877776554555665554 68999999999999999999999999999999999877
Q ss_pred EeccCCCcceEEEeecC---------CCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCC-
Q 000270 334 AFSPRPGSVYQLLSSSD---------DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN- 403 (1749)
Q Consensus 334 aFSPdg~~~~~LaSgS~---------DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPD- 403 (1749)
...- + .|+++|. |.-|+|||++..+.+..+.++.. ..-+.|.|.
T Consensus 224 Dv~G--N---lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~---------------------P~flrf~Psl 277 (1118)
T KOG1275|consen 224 DVQG--N---LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG---------------------PQFLRFHPSL 277 (1118)
T ss_pred eccC--C---eEEEeecccccccccccchhhhhhhhhhhccCCcccccC---------------------chhhhhcccc
Confidence 6654 3 7777764 55689999998776665543221 133556664
Q ss_pred CCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCE
Q 000270 404 GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDN 483 (1749)
Q Consensus 404 G~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~ 483 (1749)
...+|+++..|...+.|..+- ..+...+.........+..+.+++.+ +.
T Consensus 278 ~t~~~V~S~sGq~q~vd~~~l-----sNP~~~~~~v~p~~s~i~~fDiSsn~--------------------------~a 326 (1118)
T KOG1275|consen 278 TTRLAVTSQSGQFQFVDTATL-----SNPPAGVKMVNPNGSGISAFDISSNG--------------------------DA 326 (1118)
T ss_pred cceEEEEecccceeecccccc-----CCCccceeEEccCCCcceeEEecCCC--------------------------ce
Confidence 346888888999999884321 12222233333444558888888877 89
Q ss_pred EEEEeCCCcEEEEe
Q 000270 484 IVTCSRDGSAIIWI 497 (1749)
Q Consensus 484 LaSgS~DGtIrIWD 497 (1749)
++.|..+|.|.+|.
T Consensus 327 lafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 327 LAFGDHEGHVNLWA 340 (1118)
T ss_pred EEEecccCcEeeec
Confidence 99999999999996
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.03 Score=69.79 Aligned_cols=90 Identities=17% Similarity=0.213 Sum_probs=63.7
Q ss_pred ccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEE-EEEcCCCC-----------------
Q 000270 534 QRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYV-LDVHPFNP----------------- 595 (1749)
Q Consensus 534 ~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~Vts-LafSPdd~----------------- 595 (1749)
..+......+.+++.+|++++.|+...-|+|.|+|+.++..++.++|-.+.=.. +.......
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l 380 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFAL 380 (415)
T ss_pred EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceE
Confidence 344455566999999999999999888899999999999999998886553111 11111011
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEEee
Q 000270 596 RIAMSAGYDGKTIVWDIWEGIPIRIYEI 623 (1749)
Q Consensus 596 rlLaSgs~DGtIrVWDl~tGk~l~tl~~ 623 (1749)
.+++=+-.-|.|.||.+.+|..+..+..
T Consensus 381 ~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 381 FLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 1334455678888888888887777664
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.042 Score=73.61 Aligned_cols=259 Identities=10% Similarity=0.071 Sum_probs=135.5
Q ss_pred CCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCE
Q 000270 327 TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV 406 (1749)
Q Consensus 327 s~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~ 406 (1749)
...|.++.|.-+.. .++.+...|.|.+-|..+...... +.-...|.+++||||+.+
T Consensus 68 d~~i~s~~fl~d~~---~i~v~~~~G~iilvd~et~~~eiv---------------------g~vd~GI~aaswS~Dee~ 123 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTN---SICVITALGDIILVDPETLELEIV---------------------GNVDNGISAASWSPDEEL 123 (1265)
T ss_pred CcceEEEEEecccc---eEEEEecCCcEEEEcccccceeee---------------------eeccCceEEEeecCCCcE
Confidence 36899999999886 788888889999988776543211 223556999999999999
Q ss_pred EEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCC-------------CCCCCc
Q 000270 407 FVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK-------------EDSTPK 473 (1749)
Q Consensus 407 LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~-------------~~~~~~ 473 (1749)
++..+..++|.+-.-.= ... ..+ .+..-....+....+-|-........+...... ....-+
T Consensus 124 l~liT~~~tll~mT~~f-~~i-~E~---~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~ 198 (1265)
T KOG1920|consen 124 LALITGRQTLLFMTKDF-EPI-AEK---PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHK 198 (1265)
T ss_pred EEEEeCCcEEEEEeccc-cch-hcc---ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCC
Confidence 99988888876543210 000 000 000000000011111111100000000000000 000001
Q ss_pred ccccccC-CCEEEEE----eCC-CcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEE
Q 000270 474 FKNSWFC-HDNIVTC----SRD-GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 547 (1749)
Q Consensus 474 ~~~s~~~-~~~LaSg----S~D-GtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVa 547 (1749)
..-.|.+ ++++++. ..+ ..|++||-. +.... .-....+--.+++
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns-----------------------------~se~~~~l~~~Ls 248 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNS-----------------------------TSEPVEGLQHSLS 248 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhc-----------------------------ccCccccccccee
Confidence 1112322 2566652 233 789999866 22100 0011122345799
Q ss_pred EcCCCCEEEEEe---CCCeEEEEECCCCceEE----EecCCCCCeEEEEEcCCCCcEEEE---EeCCCcEEEEeCCCCce
Q 000270 548 WSLDNRFVLAAI---MDCRICVWNAADGSLVH----SLTGHTESTYVLDVHPFNPRIAMS---AGYDGKTIVWDIWEGIP 617 (1749)
Q Consensus 548 fSPDG~~LATGs---~DGtI~VWDl~tgklv~----tL~gH~~~VtsLafSPdd~rlLaS---gs~DGtIrVWDl~tGk~ 617 (1749)
|-|.|..+|+-. .|+.|.+|.- +|-... .+......|..|+|+. ++.+|+. ......|++|-+.+-.-
T Consensus 249 WkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns-~sdiLAv~~~~~e~~~v~lwt~~NyhW 326 (1265)
T KOG1920|consen 249 WKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNS-NSDILAVVTSNLENSLVQLWTTGNYHW 326 (1265)
T ss_pred ecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecC-CCCceeeeecccccceEEEEEecCeEE
Confidence 999999999863 5667989885 333222 2333344589999998 6667765 45555699998765421
Q ss_pred ----EEEEe----eeecc-CCCEEEEEcCCCeEEEEEC
Q 000270 618 ----IRIYE----ISRFR-DGASIILSDDVGQLYILNT 646 (1749)
Q Consensus 618 ----l~tl~----~~~~s-DG~~LAsgd~DG~I~IWdl 646 (1749)
...+. ..|.+ ....|.+...+|.+.++++
T Consensus 327 YLKq~l~~~~~~~~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 327 YLKQELQFSQKALLMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred EEEEEEeccccccccccCCCceeEEEEecCCcEEEEEE
Confidence 11121 12333 3334444446777776665
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0027 Score=79.57 Aligned_cols=74 Identities=15% Similarity=0.161 Sum_probs=64.2
Q ss_pred cCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCC
Q 000270 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPD 316 (1749)
Q Consensus 241 GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~t 316 (1749)
.+...|.|++++|+...|+.|+.||.|.+||...+....+ .+.-..+.++|+|+|.+|++|+..|.|.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 5677899999999999999999999999999987644332 3456688999999999999999999999999853
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00038 Score=86.49 Aligned_cols=199 Identities=14% Similarity=0.186 Sum_probs=128.5
Q ss_pred CCEEEEEECCCC--CEEEEEeCCcEEEEEECCCCeE--EEEEccCCCCeEEEEEcC-CCcEEEEEe----CCCeEEEEEC
Q 000270 244 NAVYCAIFDRSG--RYVITGSDDRLVKIWSMETAYC--LASCRGHEGDITDLAVSS-NNALVASAS----NDCIIRVWRL 314 (1749)
Q Consensus 244 ~~Vt~VaFSPDG--~~LATGS~DGtVrIWDl~Tg~~--l~tL~gHs~~VtsLafSP-Dg~lLASGS----~DGtIrVWDl 314 (1749)
..+.|+++.-+. .+++.|..+|.|-+-.+....- .....+|....++++|++ |...||+|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 346677665433 4788999999999988754322 233457888999999998 667788773 3568999999
Q ss_pred CCC--ceE--EEecC-CCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCC
Q 000270 315 PDG--LPI--SVLRG-HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389 (1749)
Q Consensus 315 ~tg--k~l--~tL~g-Hs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~ 389 (1749)
.++ .+. ..+.+ ......+++|..+.+ ++++|.....|.++|++........
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~k---lvlaGm~sr~~~ifdlRqs~~~~~s--------------------- 192 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTK---LVLAGMTSRSVHIFDLRQSLDSVSS--------------------- 192 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcc---hhhcccccchhhhhhhhhhhhhhhh---------------------
Confidence 887 221 12222 333455788887665 7888888889999998732211100
Q ss_pred CCCCceEEEEEcC-CCCEEEEecCCCcEEEEeC-CCCCCCCCCCCCcceeeecCCC----CCeEEEEEcCCCcccccccc
Q 000270 390 PQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNA-CKPNTDDSDQPNHEIDVLSGHE----NDVNYVQFSGCAVASRFSLA 463 (1749)
Q Consensus 390 ~h~~~Vt~LafSP-DG~~LaSGs~DGtVrIWDl-~t~~~~~s~~~~~~i~~l~gH~----~~V~sVafSpdg~as~~s~~ 463 (1749)
-.+..+..+...| .+.++++-. ||.|-+||. ++- ...+..+.... ..+..++|+|..
T Consensus 193 vnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rni--------enpl~~i~~~~N~~~~~l~~~aycPtr-------- 255 (783)
T KOG1008|consen 193 VNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNI--------ENPLQIILRNENKKPKQLFALAYCPTR-------- 255 (783)
T ss_pred hhhhhcccceecCCCCCceeccc-cCceeeccchhhh--------ccHHHHHhhCCCCcccceeeEEeccCC--------
Confidence 0122356677788 677777655 999999994 221 11222222222 248899999864
Q ss_pred cCCCCCCCCcccccccCCCEEEEEeC-CCcEEEEecCC
Q 000270 464 DSSKEDSTPKFKNSWFCHDNIVTCSR-DGSAIIWIPRS 500 (1749)
Q Consensus 464 ~~~~~~~~~~~~~s~~~~~~LaSgS~-DGtIrIWDl~s 500 (1749)
...+++... .++|+++++..
T Consensus 256 -----------------tglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 256 -----------------TGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred -----------------cchhhhhccCcceEEEecccc
Confidence 135566555 47899998874
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00027 Score=87.73 Aligned_cols=206 Identities=15% Similarity=0.130 Sum_probs=126.6
Q ss_pred CceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcC-CCCE
Q 000270 328 AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTV 406 (1749)
Q Consensus 328 ~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSP-DG~~ 406 (1749)
..+.|+++.-+... ..+++|..+|.|.+-.++...... .....++....++++|++ |..+
T Consensus 57 qy~kcva~~y~~d~-cIlavG~atG~I~l~s~r~~hdSs------------------~E~tp~~ar~Ct~lAwneLDtn~ 117 (783)
T KOG1008|consen 57 QYVKCVASFYGNDR-CILAVGSATGNISLLSVRHPHDSS------------------AEVTPGYARPCTSLAWNELDTNH 117 (783)
T ss_pred CCceeehhhcCCch-hhhhhccccCceEEeecCCccccc------------------ceecccccccccccccccccHHH
Confidence 34566666655432 278899999999998776543221 111235667799999998 6678
Q ss_pred EEEecC----CCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCC
Q 000270 407 FVTGSS----DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHD 482 (1749)
Q Consensus 407 LaSGs~----DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~ 482 (1749)
||+|-. |..+.|||+.+.-.. |........+......+++|..+ +.
T Consensus 118 LAagldkhrnds~~~Iwdi~s~ltv----Pke~~~fs~~~l~gqns~cwlrd--------------------------~k 167 (783)
T KOG1008|consen 118 LAAGLDKHRNDSSLKIWDINSLLTV----PKESPLFSSSTLDGQNSVCWLRD--------------------------TK 167 (783)
T ss_pred HHhhhhhhcccCCccceecccccCC----CccccccccccccCccccccccC--------------------------cc
Confidence 887743 567999999764221 11111111112333445666533 26
Q ss_pred EEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcC-CCCEEEEEeCC
Q 000270 483 NIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL-DNRFVLAAIMD 561 (1749)
Q Consensus 483 ~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSP-DG~~LATGs~D 561 (1749)
.+++|.....+.++|++.... .........+..+..+| .+.|+++-. |
T Consensus 168 lvlaGm~sr~~~ifdlRqs~~------------------------------~~~svnTk~vqG~tVdp~~~nY~cs~~-d 216 (783)
T KOG1008|consen 168 LVLAGMTSRSVHIFDLRQSLD------------------------------SVSSVNTKYVQGITVDPFSPNYFCSNS-D 216 (783)
T ss_pred hhhcccccchhhhhhhhhhhh------------------------------hhhhhhhhhcccceecCCCCCceeccc-c
Confidence 788888889999999873110 00001122355567777 667777655 9
Q ss_pred CeEEEEEC-CCC-ceEEEecCCCC----CeEEEEEcCCCCcEEEEEeCC-CcEEEEeCC
Q 000270 562 CRICVWNA-ADG-SLVHSLTGHTE----STYVLDVHPFNPRIAMSAGYD-GKTIVWDIW 613 (1749)
Q Consensus 562 GtI~VWDl-~tg-klv~tL~gH~~----~VtsLafSPdd~rlLaSgs~D-GtIrVWDl~ 613 (1749)
|.|.+||. ..- .++..+..... .+..++|+|....++++...| ++|+++|+.
T Consensus 217 g~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 217 GDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 99999993 222 23333332222 489999999877777777655 678888873
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.015 Score=73.09 Aligned_cols=117 Identities=15% Similarity=0.098 Sum_probs=82.8
Q ss_pred EEEEEECC-CCCEEEEE----eCCcE----EEEEECCCCeEEE--EE-ccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEE
Q 000270 246 VYCAIFDR-SGRYVITG----SDDRL----VKIWSMETAYCLA--SC-RGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1749)
Q Consensus 246 Vt~VaFSP-DG~~LATG----S~DGt----VrIWDl~Tg~~l~--tL-~gHs~~VtsLafSPDg~lLASGS~DGtIrVWD 313 (1749)
..++.||- +...+.|. +.+|. -.+|++...+... .. -...+.|.+++++|+...|+.|+.||.|.+||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 35677876 34444443 33443 3456665443221 11 14678999999999999999999999999999
Q ss_pred CCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccce
Q 000270 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPR 367 (1749)
Q Consensus 314 l~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~ 367 (1749)
...+.. .+....-..+.++|+|+|. .+++|+..|.|.+||+.-......
T Consensus 288 ~~~~~t--~~~ka~~~P~~iaWHp~ga---i~~V~s~qGelQ~FD~ALspi~~q 336 (545)
T PF11768_consen 288 TTRGVT--LLAKAEFIPTLIAWHPDGA---IFVVGSEQGELQCFDMALSPIKMQ 336 (545)
T ss_pred cCCCee--eeeeecccceEEEEcCCCc---EEEEEcCCceEEEEEeecCcccee
Confidence 876633 2333455678999999997 899999999999999876544333
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.049 Score=68.97 Aligned_cols=147 Identities=14% Similarity=0.104 Sum_probs=83.9
Q ss_pred EEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCC
Q 000270 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPD 316 (1749)
Q Consensus 237 ~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~t 316 (1749)
+.+-........+.++|+|++++.+ .||...|+.....+.... +.-..++|.+.++ +|+-...++|.|+.--.
T Consensus 26 k~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNR-YAVLESSSTIKIYKNFK 98 (443)
T ss_dssp EEEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSE-EEEE-TTS-EEEEETTE
T ss_pred ccCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecCcc-EEEEECCCeEEEEEcCc
Confidence 3444444557789999999999984 578888888655555432 2335688998555 66666688899964223
Q ss_pred CceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceE
Q 000270 317 GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 396 (1749)
Q Consensus 317 gk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt 396 (1749)
......+.. ...+..|-. |. +|+..+. +.|.+||+.+++.+..+.+ ..|.
T Consensus 99 ~~~~k~i~~-~~~~~~If~---G~---LL~~~~~-~~i~~yDw~~~~~i~~i~v----------------------~~vk 148 (443)
T PF04053_consen 99 NEVVKSIKL-PFSVEKIFG---GN---LLGVKSS-DFICFYDWETGKLIRRIDV----------------------SAVK 148 (443)
T ss_dssp E-TT------SS-EEEEE----SS---SEEEEET-TEEEEE-TTT--EEEEESS-----------------------E-E
T ss_pred cccceEEcC-CcccceEEc---Cc---EEEEECC-CCEEEEEhhHcceeeEEec----------------------CCCc
Confidence 332223321 123444433 43 5555544 4899999999998888742 2378
Q ss_pred EEEEcCCCCEEEEecCCCcEEEEeC
Q 000270 397 CCAFNANGTVFVTGSSDTLARVWNA 421 (1749)
Q Consensus 397 ~LafSPDG~~LaSGs~DGtVrIWDl 421 (1749)
.+.|+++|.++|..+. ..+.|++.
T Consensus 149 ~V~Ws~~g~~val~t~-~~i~il~~ 172 (443)
T PF04053_consen 149 YVIWSDDGELVALVTK-DSIYILKY 172 (443)
T ss_dssp EEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred EEEEECCCCEEEEEeC-CeEEEEEe
Confidence 9999999999998875 46777765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.08 Score=67.66 Aligned_cols=123 Identities=11% Similarity=0.099 Sum_probs=90.4
Q ss_pred CCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEE-EecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCC
Q 000270 284 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS-VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 362 (1749)
Q Consensus 284 Hs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~-tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg 362 (1749)
|...|.--+++..+++|+.|+.-|.+.+++-..+.... ...+..+.+..+..+++.. ++|.|+..|.|.++-+..+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~---lvAagt~~g~V~v~ql~~~ 108 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEY---LVAAGTASGRVSVFQLNKE 108 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhH---hhhhhcCCceEEeehhhcc
Confidence 44556666677789999999999999999976664332 2223455666777788764 7888999999999988764
Q ss_pred cccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCC
Q 000270 363 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACK 423 (1749)
Q Consensus 363 ~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t 423 (1749)
.....+++. .....|...|+|++|++++..|.+|...|.|.+-.+.+
T Consensus 109 ~p~~~~~~t--------------~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 109 LPRDLDYVT--------------PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCCcceeec--------------cccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 433332221 11133788899999999999999999999999887754
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.21 Score=61.35 Aligned_cols=89 Identities=15% Similarity=0.062 Sum_probs=50.6
Q ss_pred EECCCCCEEEEEeC---CcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCC
Q 000270 250 IFDRSGRYVITGSD---DRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGH 326 (1749)
Q Consensus 250 aFSPDG~~LATGS~---DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gH 326 (1749)
+|.+||+.|+.++. ...+.+.|+.+++..+.-.+-........++++++.|+-......|+--|+.+.+....+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 47789977776655 446777889988766544432222335667888888877666678999999998776666656
Q ss_pred CCceEEEEeccC
Q 000270 327 TAAVTAIAFSPR 338 (1749)
Q Consensus 327 s~~VtsIaFSPd 338 (1749)
...+-...|..+
T Consensus 122 ~~~~g~gt~v~n 133 (386)
T PF14583_consen 122 DDWKGYGTWVAN 133 (386)
T ss_dssp TTEEEEEEEEE-
T ss_pred cccccccceeeC
Confidence 666655666543
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.23 Score=60.11 Aligned_cols=270 Identities=13% Similarity=0.128 Sum_probs=145.5
Q ss_pred CeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEee----------cCCCcEEEEEcCCCcccceeecCCCCCc
Q 000270 307 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS----------SDDGTCRIWDARYSQFSPRIYIPRPSDA 376 (1749)
Q Consensus 307 GtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSg----------S~DGtIrIWDl~tg~~l~~l~~~~~~~~ 376 (1749)
+.|.|.|..+++.+..+.. +..-.+..+|+++ .++++ -..-.|.+||..+-.....+.+|.....
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk---~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGK---TIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSS---EEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCC---EEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 4799999999988877753 3344577899987 34332 2334699999999888887776542111
Q ss_pred ccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEec--CCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCC
Q 000270 377 VAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS--SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454 (1749)
Q Consensus 377 ~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs--~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpd 454 (1749)
.. ......++++.||+++++.. --..|.|.|+... +.+..+.-. . |...-|.
T Consensus 92 ~~-------------~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~---------kvv~ei~~P--G--C~~iyP~ 145 (342)
T PF06433_consen 92 QV-------------VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAK---------KVVGEIDTP--G--CWLIYPS 145 (342)
T ss_dssp -B-------------S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT---------EEEEEEEGT--S--EEEEEEE
T ss_pred ee-------------cccccceEEccCCcEEEEEccCCCCeEEEEECCCC---------ceeeeecCC--C--EEEEEec
Confidence 10 11233467888888777643 3456777777432 122211110 0 1111222
Q ss_pred CcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcc
Q 000270 455 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ 534 (1749)
Q Consensus 455 g~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~ 534 (1749)
+ ++.|.+.|.||++.-..+...-... ......|.
T Consensus 146 ~-------------------------~~~F~~lC~DGsl~~v~Ld~~Gk~~--~~~t~~F~------------------- 179 (342)
T PF06433_consen 146 G-------------------------NRGFSMLCGDGSLLTVTLDADGKEA--QKSTKVFD------------------- 179 (342)
T ss_dssp E-------------------------TTEEEEEETTSCEEEEEETSTSSEE--EEEEEESS-------------------
T ss_pred C-------------------------CCceEEEecCCceEEEEECCCCCEe--EeeccccC-------------------
Confidence 2 2578899999999988887422111 00001110
Q ss_pred cccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceE--EEecCC----------CCCeEEEEEcCCCCcEEEEE-
Q 000270 535 RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLV--HSLTGH----------TESTYVLDVHPFNPRIAMSA- 601 (1749)
Q Consensus 535 ~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv--~tL~gH----------~~~VtsLafSPdd~rlLaSg- 601 (1749)
.....-+..-+++..+..++.-+..|.|+-.|+...... ..+.-- .+.-.-+++++..+++.+..
T Consensus 180 --~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh 257 (342)
T PF06433_consen 180 --PDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMH 257 (342)
T ss_dssp --TTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEE
T ss_pred --CCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEec
Confidence 001111233445555555555777888888887654422 122110 11234577777555544432
Q ss_pred -eCC-----C--cEEEEeCCCCceEEEEeeeec--c------CCCEEE-EEcCCCeEEEEECCCCcccccc
Q 000270 602 -GYD-----G--KTIVWDIWEGIPIRIYEISRF--R------DGASII-LSDDVGQLYILNTGQGESQKDA 655 (1749)
Q Consensus 602 -s~D-----G--tIrVWDl~tGk~l~tl~~~~~--s------DG~~LA-sgd~DG~I~IWdl~tGe~~k~~ 655 (1749)
+.+ + .|-++|+.+++.+..+..... + +--+|. ....+|.|.|||..+|+.+...
T Consensus 258 ~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 258 QGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp E--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred CCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 222 2 266669999999999885421 1 333554 4466899999999999876543
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.38 Score=60.53 Aligned_cols=254 Identities=15% Similarity=0.187 Sum_probs=125.3
Q ss_pred eEEEEEcCCCcEEEEE-eCC----CeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecC----------CC
Q 000270 288 ITDLAVSSNNALVASA-SND----CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD----------DG 352 (1749)
Q Consensus 288 VtsLafSPDg~lLASG-S~D----GtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~----------DG 352 (1749)
+..+++||||++||.+ +.. ..|+|.|+.+|+.+...-... ....+.|.+++.. ++.+... ..
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~--~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKG--FFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSE--EEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCE--EEEEEeCcccccccCCCCc
Confidence 3467899999988865 333 369999999997765321111 1234999999872 3333322 22
Q ss_pred cEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCC----CcEEEEeCCCCCCCC
Q 000270 353 TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD----TLARVWNACKPNTDD 428 (1749)
Q Consensus 353 tIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~D----GtVrIWDl~t~~~~~ 428 (1749)
.|.+|.+.+......+..... ........+..++|+++|+..... ..|.+.++....
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~----------------~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~--- 263 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEP----------------DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG--- 263 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-T----------------TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT---
T ss_pred EEEEEECCCChHhCeeEEeec----------------CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC---
Confidence 377788776654422221110 111125678899999987754332 346777775421
Q ss_pred CCCCCcceeeecCCCCCeE-EEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEe---CCCcEEEEecCCCCCC
Q 000270 429 SDQPNHEIDVLSGHENDVN-YVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCS---RDGSAIIWIPRSRRSH 504 (1749)
Q Consensus 429 s~~~~~~i~~l~gH~~~V~-sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS---~DGtIrIWDl~s~k~~ 504 (1749)
.+......+......+. .+.... + .+++... ..+.|...++.....
T Consensus 264 --~~~~~~~~l~~~~~~~~~~v~~~~-~--------------------------~~yi~Tn~~a~~~~l~~~~l~~~~~- 313 (414)
T PF02897_consen 264 --SPDAKPKLLSPREDGVEYYVDHHG-D--------------------------RLYILTNDDAPNGRLVAVDLADPSP- 313 (414)
T ss_dssp --TSS-SEEEEEESSSS-EEEEEEET-T--------------------------EEEEEE-TT-TT-EEEEEETTSTSG-
T ss_pred --CCcCCcEEEeCCCCceEEEEEccC-C--------------------------EEEEeeCCCCCCcEEEEeccccccc-
Confidence 11122233333333332 232221 1 1222221 223444444443110
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEE-eCCC--eEEEEECCCCceEEEec-C
Q 000270 505 PKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA-IMDC--RICVWNAADGSLVHSLT-G 580 (1749)
Q Consensus 505 ~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATG-s~DG--tI~VWDl~tgklv~tL~-g 580 (1749)
..| ...+..+...+.-..+...+.+|+.. ..++ .|++|++..+.....+. .
T Consensus 314 ---~~~----------------------~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p 368 (414)
T PF02897_consen 314 ---AEW----------------------WTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLP 368 (414)
T ss_dssp ---GGE----------------------EEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESS
T ss_pred ---ccc----------------------eeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCC
Confidence 000 11334444443333444445555544 3444 58899998444444333 2
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeC---CCcEEEEeCCCCceE
Q 000270 581 HTESTYVLDVHPFNPRIAMSAGY---DGKTIVWDIWEGIPI 618 (1749)
Q Consensus 581 H~~~VtsLafSPdd~rlLaSgs~---DGtIrVWDl~tGk~l 618 (1749)
-.+.|..+...+....+.++.+. -++|..||+.+++..
T Consensus 369 ~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 369 EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 33446666666655555555543 356888888888754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.92 Score=56.79 Aligned_cols=273 Identities=14% Similarity=0.081 Sum_probs=164.9
Q ss_pred EEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEE-EEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEE
Q 000270 267 VKIWSMETAYCLASCRGHEGDITDLAVSSNNALV-ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQL 345 (1749)
Q Consensus 267 VrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lL-ASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~L 345 (1749)
+.+++..+......+.-+. ....+++.+++..+ ++-.....+.+-+............-...-..+++++.+. ..+
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~--~vy 89 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGN--KVY 89 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCC--eEE
Confidence 6667766666555554333 56677888888433 3333333555555542222221221113445778888876 245
Q ss_pred EeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecC---CCcEEEEeCC
Q 000270 346 LSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS---DTLARVWNAC 422 (1749)
Q Consensus 346 aSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~---DGtVrIWDl~ 422 (1749)
++...+..|.+.|..+......+.. ......+++++++..+.++.. ++.+.+.|..
T Consensus 90 v~~~~~~~v~vid~~~~~~~~~~~v---------------------G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~ 148 (381)
T COG3391 90 VTTGDSNTVSVIDTATNTVLGSIPV---------------------GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAA 148 (381)
T ss_pred EecCCCCeEEEEcCcccceeeEeee---------------------ccCCceEEECCCCCEEEEEecccCCceEEEEeCC
Confidence 6666678899999776665544432 114668999999987777665 5778888775
Q ss_pred CCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCC-EEEEEeCCCcEEEEecCCC
Q 000270 423 KPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHD-NIVTCSRDGSAIIWIPRSR 501 (1749)
Q Consensus 423 t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~-~LaSgS~DGtIrIWDl~s~ 501 (1749)
+. ..+.....-..+ ..+++.|++ . .+++-..++.|.+.|..+.
T Consensus 149 t~---------~~~~~~~vG~~P-~~~a~~p~g--------------------------~~vyv~~~~~~~v~vi~~~~~ 192 (381)
T COG3391 149 TN---------KVTATIPVGNTP-TGVAVDPDG--------------------------NKVYVTNSDDNTVSVIDTSGN 192 (381)
T ss_pred CC---------eEEEEEecCCCc-ceEEECCCC--------------------------CeEEEEecCCCeEEEEeCCCc
Confidence 43 222222221223 788898887 4 4555568899999986642
Q ss_pred CCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCC---CeEEEEECCCCceEEE-
Q 000270 502 RSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAADGSLVHS- 577 (1749)
Q Consensus 502 k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~D---GtI~VWDl~tgklv~t- 577 (1749)
.... ...............++++++|.++.+.... +.+.+.|..++.....
T Consensus 193 ~v~~-------------------------~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~ 247 (381)
T COG3391 193 SVVR-------------------------GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATD 247 (381)
T ss_pred ceec-------------------------cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEec
Confidence 2110 0000011222345678999999977766544 5999999998887765
Q ss_pred ecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEeee
Q 000270 578 LTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS 624 (1749)
Q Consensus 578 L~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~ 624 (1749)
+..-......+.++|++..+.+.-+..+.+.+-|..+......+..+
T Consensus 248 ~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~ 294 (381)
T COG3391 248 LPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG 294 (381)
T ss_pred cccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence 22222145678999955444444355688888888887777766543
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.3 Score=57.75 Aligned_cols=143 Identities=17% Similarity=0.172 Sum_probs=84.6
Q ss_pred CCCCEEEEEeCCcEEEEEECCC-CeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEe--------
Q 000270 253 RSGRYVITGSDDRLVKIWSMET-AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL-------- 323 (1749)
Q Consensus 253 PDG~~LATGS~DGtVrIWDl~T-g~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL-------- 323 (1749)
..++.|+.|+.+| |.++++.. ......+ +...|..|...++-+.|++-+ |+.|.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4578999999999 89999833 3333332 233499999999877776665 499999998765433310
Q ss_pred ------cCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCC-----cccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000270 324 ------RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS-----QFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1749)
Q Consensus 324 ------~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg-----~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~ 392 (1749)
......+...+..........|+++. ...|.+|..... .....+.+ .
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~l---------------------p 138 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISL---------------------P 138 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEc---------------------C
Confidence 11222333333111111222444444 448888877653 12222221 3
Q ss_pred CceEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Q 000270 393 HQIFCCAFNANGTVFVTGSSDTLARVWNACKP 424 (1749)
Q Consensus 393 ~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~ 424 (1749)
..+.+++|. +..|++|..++ ..+.|+.++
T Consensus 139 ~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~ 167 (275)
T PF00780_consen 139 DPPSSIAFL--GNKICVGTSKG-FYLIDLNTG 167 (275)
T ss_pred CCcEEEEEe--CCEEEEEeCCc-eEEEecCCC
Confidence 557888988 55677776544 667888653
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.22 Score=62.35 Aligned_cols=153 Identities=16% Similarity=0.165 Sum_probs=85.3
Q ss_pred CEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCC--------
Q 000270 245 AVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPD-------- 316 (1749)
Q Consensus 245 ~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~t-------- 316 (1749)
.|+++.|+++..-||.|...|.|.||.+...+.-. ..-...-..+.|.+- ...++.-.|-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 58999999998899999999999999876533221 000111112222110 00111112223321
Q ss_pred C-ceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCce
Q 000270 317 G-LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395 (1749)
Q Consensus 317 g-k~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~V 395 (1749)
| .+...+....++|++++.|.-| ++|.|..+|.+.|.|++....+..-.+.. ..........|
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG----Fvaigy~~G~l~viD~RGPavI~~~~i~~------------~~~~~~~~~~v 138 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG----FVAIGYESGSLVVIDLRGPAVIYNENIRE------------SFLSKSSSSYV 138 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS----EEEEEETTSEEEEEETTTTEEEEEEEGGG--------------T-SS----E
T ss_pred ccCchhheeccCCcEeEEecCCCc----EEEEEecCCcEEEEECCCCeEEeeccccc------------cccccccccCe
Confidence 1 3445566678999999998665 89999999999999998877665543211 11112345568
Q ss_pred EEEEEcC-----CC---CEEEEecCCCcEEEEeC
Q 000270 396 FCCAFNA-----NG---TVFVTGSSDTLARVWNA 421 (1749)
Q Consensus 396 t~LafSP-----DG---~~LaSGs~DGtVrIWDl 421 (1749)
+++.|+- |+ -+|++|+..|.+.+|.+
T Consensus 139 t~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkI 172 (395)
T PF08596_consen 139 TSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKI 172 (395)
T ss_dssp EEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEE
T ss_pred eEEEEEEEecCCCcccceEEEEEeCCCCEEEEEE
Confidence 8888863 33 37888999999999987
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.07 Score=65.85 Aligned_cols=296 Identities=14% Similarity=0.119 Sum_probs=147.7
Q ss_pred cCCCcEEEEE---------eCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcc
Q 000270 294 SSNNALVASA---------SNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF 364 (1749)
Q Consensus 294 SPDg~lLASG---------S~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~ 364 (1749)
|||+++++.. +..+.+.|+|+.+++...... ....+....|+|+++ .++... ++.|.++++.++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g~---~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP-PPPKLQDAKWSPDGK---YIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--EETTBSEEEE-SSST---EEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC-CccccccceeecCCC---eeEEEe-cCceEEEECCCCCe
Confidence 5788877764 234679999999976544333 366788999999987 555443 56799999877743
Q ss_pred cceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecC-CCcEEEEeCCCCCCCCCCCCCcceeeecCCC
Q 000270 365 SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDVLSGHE 443 (1749)
Q Consensus 365 l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~-DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~ 443 (1749)
. .+..........|..--.... .--..-..+-|||||++||.... +..|..+.+.. .....
T Consensus 76 ~-~lT~dg~~~i~nG~~dwvyeE--Ev~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~---------------~~~~~ 137 (353)
T PF00930_consen 76 T-QLTTDGEPGIYNGVPDWVYEE--EVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPD---------------YSPPD 137 (353)
T ss_dssp E-ESES--TTTEEESB--HHHHH--HTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEE---------------ESSST
T ss_pred E-EeccccceeEEcCccceeccc--cccccccceEECCCCCEEEEEEECCcCCceEEeec---------------cCCcc
Confidence 2 232211111111111000000 00112346889999999987644 33344443311 01111
Q ss_pred ---CCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCC--cEEEEecCCCCCCccccccccccccCC
Q 000270 444 ---NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG--SAIIWIPRSRRSHPKAARWTQAYHLKV 518 (1749)
Q Consensus 444 ---~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG--tIrIWDl~s~k~~~~~~~~~~~~~l~v 518 (1749)
..+..+.+-.-| ...- .+.|+++.+++....
T Consensus 138 ~~yp~~~~~~YPk~G--------------------------------~~np~v~l~v~~~~~~~~~~~------------ 173 (353)
T PF00930_consen 138 SQYPEVESIRYPKAG--------------------------------DPNPRVSLFVVDLASGKTTEL------------ 173 (353)
T ss_dssp ESS-EEEEEE--BTT--------------------------------S---EEEEEEEESSSTCCCEE------------
T ss_pred ccCCcccccccCCCC--------------------------------CcCCceEEEEEECCCCcEEEe------------
Confidence 123333332111 1111 345677765442100
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceEEEecC-CCC---CeEEEE
Q 000270 519 PPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD-----CRICVWNAADGSLVHSLTG-HTE---STYVLD 589 (1749)
Q Consensus 519 ~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~D-----GtI~VWDl~tgklv~tL~g-H~~---~VtsLa 589 (1749)
.....+.....-+..+.|++++..|++.-.+ ..+.++|..++.+...+.. ..+ .-..+.
T Consensus 174 ------------~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~ 241 (353)
T PF00930_consen 174 ------------DPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPH 241 (353)
T ss_dssp ---------------HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEE
T ss_pred ------------eeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccc
Confidence 0000112234458899999999955444322 2577889888776543321 112 223455
Q ss_pred Ec-CCCCcEEEEEeCCCcEEEE--eCCCCceEEEEeeee---------ccCCCEEEE-EcCC----CeEEEEECC-CCcc
Q 000270 590 VH-PFNPRIAMSAGYDGKTIVW--DIWEGIPIRIYEISR---------FRDGASIIL-SDDV----GQLYILNTG-QGES 651 (1749)
Q Consensus 590 fS-Pdd~rlLaSgs~DGtIrVW--Dl~tGk~l~tl~~~~---------~sDG~~LAs-gd~D----G~I~IWdl~-tGe~ 651 (1749)
|. +++..+|.....||.-.|+ +...+... .+..+. ..++..|.+ +..+ -+|+..++. .|+.
T Consensus 242 ~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~ 320 (353)
T PF00930_consen 242 FLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP 320 (353)
T ss_dssp E-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE
T ss_pred cccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe
Confidence 54 6677777777788865554 55555433 333221 125555554 3332 267777777 5443
Q ss_pred cc----ccc-ceeeecCCCccee
Q 000270 652 QK----DAK-YDQFFLGDYRPLV 669 (1749)
Q Consensus 652 ~k----~~~-~~~fFs~D~r~Lv 669 (1749)
.. ... ....|++|+..++
T Consensus 321 ~~LT~~~~~~~~~~~Spdg~y~v 343 (353)
T PF00930_consen 321 KCLTCEDGDHYSASFSPDGKYYV 343 (353)
T ss_dssp EESSTTSSTTEEEEE-TTSSEEE
T ss_pred EeccCCCCCceEEEECCCCCEEE
Confidence 31 111 3567888887764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.81 Score=56.42 Aligned_cols=94 Identities=15% Similarity=0.083 Sum_probs=45.4
Q ss_pred ECCCCeEEEEEccCCCCeEEE-----EEcCCCcEEEEEeC-CC--eEEEEECCCCceEEEecCCCCceEEEEeccCCCcc
Q 000270 271 SMETAYCLASCRGHEGDITDL-----AVSSNNALVASASN-DC--IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSV 342 (1749)
Q Consensus 271 Dl~Tg~~l~tL~gHs~~VtsL-----afSPDg~lLASGS~-DG--tIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~ 342 (1749)
|..||..+..|..+...-..+ +|.+||+.|+.++. || .+.+-|+.+++..+.-.+-........+++++.
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~-- 93 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDR-- 93 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSS--
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCC--
Confidence 667888888877544333333 46778866555544 54 577778988876655443323333566778765
Q ss_pred eEEEeecCCCcEEEEEcCCCcccce
Q 000270 343 YQLLSSSDDGTCRIWDARYSQFSPR 367 (1749)
Q Consensus 343 ~~LaSgS~DGtIrIWDl~tg~~l~~ 367 (1749)
.++-......|+-.|+.+.+....
T Consensus 94 -~~~Yv~~~~~l~~vdL~T~e~~~v 117 (386)
T PF14583_consen 94 -ALYYVKNGRSLRRVDLDTLEERVV 117 (386)
T ss_dssp -EEEEEETTTEEEEEETTT--EEEE
T ss_pred -eEEEEECCCeEEEEECCcCcEEEE
Confidence 444444446788889888764433
|
|
| >KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0011 Score=78.66 Aligned_cols=79 Identities=10% Similarity=0.001 Sum_probs=67.0
Q ss_pred hcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHH
Q 000270 1651 ANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSD 1730 (1749)
Q Consensus 1651 ~~~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~~s~~~~~a~~l~~ 1730 (1749)
+++....-.+..++-...+|-|.-+|++|+|.+|++.+..+++|.+ -+|..|..+|+.||-|||+++..|+..|+++-.
T Consensus 220 l~~~~p~~~lnyg~tas~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yyelank~lh 298 (418)
T KOG1828|consen 220 LNRVDPVAYLNYGPTASFAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYYELANKQLH 298 (418)
T ss_pred hcccCchhhhcccchhhhcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHHHHHHhhhh
Confidence 3333334445555666678999999999999999999999999999 899999999999999999999999999987644
|
|
| >KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.00017 Score=85.31 Aligned_cols=72 Identities=18% Similarity=0.114 Sum_probs=65.8
Q ss_pred cccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH
Q 000270 1662 KLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVT 1733 (1749)
Q Consensus 1662 ~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~~s~~~~~a~~l~~~~~ 1733 (1749)
-|+.....|+|.+||..|||+.||+.+++-++|-++.++..|.++|..||..||..++.+...|++|.-+-.
T Consensus 42 fplt~~map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~Tv~~~aaKrL~~v~~ 113 (418)
T KOG1828|consen 42 FPLTDKMAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPTVPIVAAKRLCPVRL 113 (418)
T ss_pred cccchhhccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCccccccccccchhhc
Confidence 344556789999999999999999999999999999999999999999999999999999999999876543
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=96.71 E-value=1.2 Score=57.99 Aligned_cols=51 Identities=18% Similarity=0.179 Sum_probs=38.3
Q ss_pred CcEEEEeCCCCceEEEEeeeec--c-----CCCEEEEEcCCCeEEEEECCCCcccccc
Q 000270 605 GKTIVWDIWEGIPIRIYEISRF--R-----DGASIILSDDVGQLYILNTGQGESQKDA 655 (1749)
Q Consensus 605 GtIrVWDl~tGk~l~tl~~~~~--s-----DG~~LAsgd~DG~I~IWdl~tGe~~k~~ 655 (1749)
|.|.-||+.+|+.+-.+..... + .|.++++++.+|.|+.+|..+|+.+-..
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~ 498 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKF 498 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEE
Confidence 5688889999988766653211 1 6667778888999999999999887443
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.69 E-value=2.3 Score=56.92 Aligned_cols=102 Identities=16% Similarity=0.213 Sum_probs=70.7
Q ss_pred eeEEEEcCC-CCEEEEEe----------CCCeEEEEECCCCceEEEecCC--CCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 000270 543 VNMIVWSLD-NRFVLAAI----------MDCRICVWNAADGSLVHSLTGH--TESTYVLDVHPFNPRIAMSAGYDGKTIV 609 (1749)
Q Consensus 543 VtsVafSPD-G~~LATGs----------~DGtI~VWDl~tgklv~tL~gH--~~~VtsLafSPdd~rlLaSgs~DGtIrV 609 (1749)
|.++.|.-| +.++++|+ ..|+|.||.+..+..+.....+ .+.|.++.. .++++|| +-...|++
T Consensus 777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~--fngkllA--~In~~vrL 852 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE--FNGKLLA--GINQSVRL 852 (1096)
T ss_pred eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh--hCCeEEE--ecCcEEEE
Confidence 555668777 78888876 3588999988775544444333 345555543 4678874 45678999
Q ss_pred EeCCCCceEEEEeeeecc--------CCCEEEEEcCCCeEEEEECCC
Q 000270 610 WDIWEGIPIRIYEISRFR--------DGASIILSDDVGQLYILNTGQ 648 (1749)
Q Consensus 610 WDl~tGk~l~tl~~~~~s--------DG~~LAsgd~DG~I~IWdl~t 648 (1749)
+++.+++.++.-.....+ .|..+|+|+--+.|.+.....
T Consensus 853 ye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~ 899 (1096)
T KOG1897|consen 853 YEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKG 899 (1096)
T ss_pred EEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEec
Confidence 999998777655443333 899999999988887776543
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.005 Score=47.33 Aligned_cols=38 Identities=32% Similarity=0.731 Sum_probs=34.9
Q ss_pred ceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEE
Q 000270 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWS 271 (1749)
Q Consensus 234 ~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWD 271 (1749)
+.+..+.+|...|+++.|.+++.++++++.|+.|++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45677889999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.15 Score=64.41 Aligned_cols=131 Identities=21% Similarity=0.146 Sum_probs=81.6
Q ss_pred EEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeC---C-CeEEEEECCCCceEEEecCCCCceEEEEeccCCCcc
Q 000270 267 VKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN---D-CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSV 342 (1749)
Q Consensus 267 VrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~---D-GtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~ 342 (1749)
+.+=|.. |.....+..-...+..-+|+|++..++..+. . ..|.++++.+++....+. ..+.-...+|+||++
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~-- 250 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS-- 250 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC--
Confidence 3333433 5555666655677888899999987765532 2 469999999987655554 334455679999997
Q ss_pred eEEEeecCCCcEEEE--EcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecC-CCc--EE
Q 000270 343 YQLLSSSDDGTCRIW--DARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTL--AR 417 (1749)
Q Consensus 343 ~~LaSgS~DGtIrIW--Dl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~-DGt--Vr 417 (1749)
.++++...||...|| |+.++. ...+.- ..+.-..=.|+|||+.|+..+. .|. |.
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~--------------------~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~ 309 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKN-LPRLTN--------------------GFGINTSPSWSPDGSKIVFTSDRGGRPQIY 309 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCc-ceeccc--------------------CCccccCccCCCCCCEEEEEeCCCCCcceE
Confidence 366777777875555 666555 222210 1111124579999998887654 444 55
Q ss_pred EEeCC
Q 000270 418 VWNAC 422 (1749)
Q Consensus 418 IWDl~ 422 (1749)
++++.
T Consensus 310 ~~~~~ 314 (425)
T COG0823 310 LYDLE 314 (425)
T ss_pred EECCC
Confidence 55553
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.087 Score=70.17 Aligned_cols=135 Identities=12% Similarity=0.104 Sum_probs=93.3
Q ss_pred eCCcEEEEEECCCCeEEEEEccCCCC-eEEEEEcC-----CCcEEEEEeCCCeEEEEECCCC--ceEEE-e--cCCCCce
Q 000270 262 SDDRLVKIWSMETAYCLASCRGHEGD-ITDLAVSS-----NNALVASASNDCIIRVWRLPDG--LPISV-L--RGHTAAV 330 (1749)
Q Consensus 262 S~DGtVrIWDl~Tg~~l~tL~gHs~~-VtsLafSP-----Dg~lLASGS~DGtIrVWDl~tg--k~l~t-L--~gHs~~V 330 (1749)
.....|+-.|+..|+.+..+..|... |.+++=.. +..-.+.|-.+..|..||.+-. +++.. . -......
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 34578999999999999999987654 55554321 1233456777888999998753 22211 1 1234467
Q ss_pred EEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEe
Q 000270 331 TAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG 410 (1749)
Q Consensus 331 tsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSG 410 (1749)
.|++-+.+| +||+|+.+|.|++||- .|....+ .+.+-+.+|.+|..+.||+||++.
T Consensus 581 s~~aTt~~G----~iavgs~~G~IRLyd~-~g~~AKT-------------------~lp~lG~pI~~iDvt~DGkwilaT 636 (794)
T PF08553_consen 581 SCFATTEDG----YIAVGSNKGDIRLYDR-LGKRAKT-------------------ALPGLGDPIIGIDVTADGKWILAT 636 (794)
T ss_pred eEEEecCCc----eEEEEeCCCcEEeecc-cchhhhh-------------------cCCCCCCCeeEEEecCCCcEEEEe
Confidence 888888877 7999999999999983 2221111 123446789999999999998866
Q ss_pred cCCCcEEEEeC
Q 000270 411 SSDTLARVWNA 421 (1749)
Q Consensus 411 s~DGtVrIWDl 421 (1749)
+ +..|.|++.
T Consensus 637 c-~tyLlLi~t 646 (794)
T PF08553_consen 637 C-KTYLLLIDT 646 (794)
T ss_pred e-cceEEEEEE
Confidence 5 667778776
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.48 Score=55.62 Aligned_cols=170 Identities=11% Similarity=0.131 Sum_probs=98.3
Q ss_pred EEEEccCCCCEEEEEECCCCC-EEEEEeCCcEEEEEECCCCeEEEEEccC-CCCeEEEEEcCCCcEEEEEeCCCeEEEEE
Q 000270 236 IKRVRGHRNAVYCAIFDRSGR-YVITGSDDRLVKIWSMETAYCLASCRGH-EGDITDLAVSSNNALVASASNDCIIRVWR 313 (1749)
Q Consensus 236 i~tL~GH~~~Vt~VaFSPDG~-~LATGS~DGtVrIWDl~Tg~~l~tL~gH-s~~VtsLafSPDg~lLASGS~DGtIrVWD 313 (1749)
.+.|.|-...|..|+|+|+.. ++|+....+.|...+.. |+.++.+.-. .+..-.|++..++.++++--.++.+.+.+
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 456777777899999999755 55566678888888874 7888876533 46788999998888777766689999998
Q ss_pred CCCCc---e---EEEec-----CCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCC--C-cccceeecCCCCCcccC
Q 000270 314 LPDGL---P---ISVLR-----GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY--S-QFSPRIYIPRPSDAVAG 379 (1749)
Q Consensus 314 l~tgk---~---l~tL~-----gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~t--g-~~l~~l~~~~~~~~~~g 379 (1749)
+.... . ...+. .+...+-+|+|.+.++ .|+++-+.....||.+.. . ..+..... .... .
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~---~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~---~~~~-~ 165 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN---RLFVAKERKPKRLYEVNGFPGGFDLFVSDD---QDLD-D 165 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTT---EEEEEEESSSEEEEEEESTT-SS--EEEE----HHHH--
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCC---EEEEEeCCCChhhEEEccccCccceeeccc---cccc-c
Confidence 84321 1 11121 2445689999999876 566667777777777654 1 11111000 0000 0
Q ss_pred CCCCCCCCCCCCCCceEEEEEcCC-CCEEEEecCCCcEEEEeC
Q 000270 380 RNMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNA 421 (1749)
Q Consensus 380 ~~~~~~~s~~~h~~~Vt~LafSPD-G~~LaSGs~DGtVrIWDl 421 (1749)
.......+.+++|+|. |.+++.......|.++|.
T Consensus 166 --------~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~ 200 (248)
T PF06977_consen 166 --------DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR 200 (248)
T ss_dssp --------HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T
T ss_pred --------ccceeccccceEEcCCCCeEEEEECCCCeEEEECC
Confidence 0112334788999985 567777777888888885
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.36 E-value=3.2 Score=52.57 Aligned_cols=65 Identities=18% Similarity=0.249 Sum_probs=45.6
Q ss_pred EEECCCCCEEEEEeCC----------c-EEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECC
Q 000270 249 AIFDRSGRYVITGSDD----------R-LVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP 315 (1749)
Q Consensus 249 VaFSPDG~~LATGS~D----------G-tVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~ 315 (1749)
++.+|.|-.||...++ . .|.||+.. |+++.++.--.+.|.++.|+.+.. |+....||.++++|+.
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCC
Confidence 3445555555554333 1 59999976 667777654448999999998654 5566789999999985
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.011 Score=45.44 Aligned_cols=39 Identities=36% Similarity=0.632 Sum_probs=35.1
Q ss_pred CeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEE
Q 000270 275 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1749)
Q Consensus 275 g~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWD 313 (1749)
+..+..+..|...|.++.|.+++.++++++.|+.|++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456777888999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.016 Score=72.81 Aligned_cols=93 Identities=12% Similarity=0.084 Sum_probs=77.9
Q ss_pred CCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeE-EEEEcCCCcEEEEEeCCCeEEEEECCCCceEEE
Q 000270 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT-DLAVSSNNALVASASNDCIIRVWRLPDGLPISV 322 (1749)
Q Consensus 244 ~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~Vt-sLafSPDg~lLASGS~DGtIrVWDl~tgk~l~t 322 (1749)
..|.-+.|+|.-.++|++..+|.|.+..+. .+.+.++.-|...++ +++|.|||++||.|-.||+|++.|+.+|..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 356778899999999999999999999988 778888887888888 999999999999999999999999999876655
Q ss_pred e-cCCCCceEEEEecc
Q 000270 323 L-RGHTAAVTAIAFSP 337 (1749)
Q Consensus 323 L-~gHs~~VtsIaFSP 337 (1749)
. ..-...|.++.|.+
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 2 22345667777764
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.22 E-value=2.3 Score=53.33 Aligned_cols=266 Identities=10% Similarity=0.056 Sum_probs=155.6
Q ss_pred CEEEEEECCCCCEEEEE-eCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCc-EEEEEeCCCeEEEEECCCCceEEE
Q 000270 245 AVYCAIFDRSGRYVITG-SDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA-LVASASNDCIIRVWRLPDGLPISV 322 (1749)
Q Consensus 245 ~Vt~VaFSPDG~~LATG-S~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~-lLASGS~DGtIrVWDl~tgk~l~t 322 (1749)
....+++.++|..+... .....+.+.+............-...-..+++++.+. ..++...+..|.+.|..+...+..
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 44567788888544333 2223566666552222221221113445778888877 555555568999999887777666
Q ss_pred ecCCCCceEEEEeccCCCcceEEEeec--CCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEE
Q 000270 323 LRGHTAAVTAIAFSPRPGSVYQLLSSS--DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 400 (1749)
Q Consensus 323 L~gHs~~VtsIaFSPdg~~~~~LaSgS--~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~Laf 400 (1749)
..-.. ....++|+++++. ..++-. .++++.+.|..++.....+... .. -..+++
T Consensus 112 ~~vG~-~P~~~~~~~~~~~--vYV~n~~~~~~~vsvid~~t~~~~~~~~vG--------------------~~-P~~~a~ 167 (381)
T COG3391 112 IPVGL-GPVGLAVDPDGKY--VYVANAGNGNNTVSVIDAATNKVTATIPVG--------------------NT-PTGVAV 167 (381)
T ss_pred eeecc-CCceEEECCCCCE--EEEEecccCCceEEEEeCCCCeEEEEEecC--------------------CC-cceEEE
Confidence 54222 6678999999872 333333 4788999998888766654320 11 278999
Q ss_pred cCCCCEEEEec-CCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCccccccc
Q 000270 401 NANGTVFVTGS-SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWF 479 (1749)
Q Consensus 401 SPDG~~LaSGs-~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~ 479 (1749)
+|+|..+++.. .++.|.+.|........ ..... ...-...-..+.+.+++.
T Consensus 168 ~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~----~~~~~~~P~~i~v~~~g~----------------------- 219 (381)
T COG3391 168 DPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGS----LVGVGTGPAGIAVDPDGN----------------------- 219 (381)
T ss_pred CCCCCeEEEEecCCCeEEEEeCCCcceec-ccccc----ccccCCCCceEEECCCCC-----------------------
Confidence 99999666554 68899999975432211 11000 111122334566777661
Q ss_pred CCCEEEEEeCC--CcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEE
Q 000270 480 CHDNIVTCSRD--GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 557 (1749)
Q Consensus 480 ~~~~LaSgS~D--GtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LAT 557 (1749)
...++...+ +.+...|..++...... ...+.. ....++++|+|.++.+
T Consensus 220 --~~yV~~~~~~~~~v~~id~~~~~v~~~~---------------------------~~~~~~-~~~~v~~~p~g~~~yv 269 (381)
T COG3391 220 --RVYVANDGSGSNNVLKIDTATGNVTATD---------------------------LPVGSG-APRGVAVDPAGKAAYV 269 (381)
T ss_pred --EEEEEeccCCCceEEEEeCCCceEEEec---------------------------cccccC-CCCceeECCCCCEEEE
Confidence 133333333 57777777653311000 001111 3456789999999988
Q ss_pred EeC-CCeEEEEECCCCceEEEecCCCC---CeEEEEEcC
Q 000270 558 AIM-DCRICVWNAADGSLVHSLTGHTE---STYVLDVHP 592 (1749)
Q Consensus 558 Gs~-DGtI~VWDl~tgklv~tL~gH~~---~VtsLafSP 592 (1749)
... .+.+.+.|..+......+..... .+..+++.+
T Consensus 270 ~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 270 ANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred EecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 854 48899999988887776554332 355566555
|
|
| >COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0015 Score=80.86 Aligned_cols=90 Identities=20% Similarity=0.320 Sum_probs=84.6
Q ss_pred cccccccccccccccccCCCccccCCCCCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHH
Q 000270 1652 NRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDL 1731 (1749)
Q Consensus 1652 ~~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~~s~~~~~a~~l~~~ 1731 (1749)
..+...|.+..+.+...+|+|++.|..+|++.|.+.+|.++||+..+++..|..++++||.-||++...+++++..+.++
T Consensus 276 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (371)
T COG5076 276 QAHVGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNANVLEDF 355 (371)
T ss_pred ccccccccccccCCcccccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhccchhhh
Confidence 55678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCC
Q 000270 1732 VTRTLSSLKA 1741 (1749)
Q Consensus 1732 ~~~~l~~~~~ 1741 (1749)
+...++..+.
T Consensus 356 ~~~~~~~~~~ 365 (371)
T COG5076 356 VIKKTRLIRE 365 (371)
T ss_pred Hhhhhhhhhc
Confidence 9888766544
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.83 Score=57.50 Aligned_cols=113 Identities=13% Similarity=0.104 Sum_probs=70.6
Q ss_pred EEEEEECCCCCEEEEE-----eCCcEEEEEECCCCeEEEEE-ccCCCCeEEEEEcCCCcEEEEEeCCC-----------e
Q 000270 246 VYCAIFDRSGRYVITG-----SDDRLVKIWSMETAYCLASC-RGHEGDITDLAVSSNNALVASASNDC-----------I 308 (1749)
Q Consensus 246 Vt~VaFSPDG~~LATG-----S~DGtVrIWDl~Tg~~l~tL-~gHs~~VtsLafSPDg~lLASGS~DG-----------t 308 (1749)
+..+++||||++||.+ ++...|+|+|+.+|+.+... ... ....+.|.++++.|+....+. .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 4467899999999855 22357999999999877642 221 123499999988776665432 3
Q ss_pred EEEEECCCCce--EEEecCCCCc--eEEEEeccCCCcceEEEeecC--C-CcEEEEEcCCC
Q 000270 309 IRVWRLPDGLP--ISVLRGHTAA--VTAIAFSPRPGSVYQLLSSSD--D-GTCRIWDARYS 362 (1749)
Q Consensus 309 IrVWDl~tgk~--l~tL~gHs~~--VtsIaFSPdg~~~~~LaSgS~--D-GtIrIWDl~tg 362 (1749)
|..|.+.++.. ...+...... ...+..+++++ ++++.... + ..|.+.++..+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~--~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGR--YLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSS--EEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCccc--EEEEEEEccccCCeEEEEecccc
Confidence 78888877643 2444433332 67888999887 23333332 2 34677777654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.26 Score=57.77 Aligned_cols=178 Identities=10% Similarity=0.027 Sum_probs=93.7
Q ss_pred EEccCCCCeEEEEEcCCCc-EEEEEeCCCeEEEEECCCCceEEEecCC-CCceEEEEeccCCCcceEEEeecCCCcEEEE
Q 000270 280 SCRGHEGDITDLAVSSNNA-LVASASNDCIIRVWRLPDGLPISVLRGH-TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW 357 (1749)
Q Consensus 280 tL~gHs~~VtsLafSPDg~-lLASGS~DGtIrVWDl~tgk~l~tL~gH-s~~VtsIaFSPdg~~~~~LaSgS~DGtIrIW 357 (1749)
.+.+-...+..|+|.|+.. ++|+....+.|...+. +|+.+..+.-. .+..-+|++..++. ++++.-.++.+.++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~---~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGR---YVLSEERDQRLYIF 91 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTE---EEEEETTTTEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCE---EEEEEcCCCcEEEE
Confidence 4556666799999999754 6666667788888886 58888776533 35688999987764 55555568999999
Q ss_pred EcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCccee
Q 000270 358 DARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID 437 (1749)
Q Consensus 358 Dl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~ 437 (1749)
++........... .... .......+...+-.++|++.+..|+++-...-..||.+.... ........
T Consensus 92 ~~~~~~~~~~~~~--------~~~~-~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~----~~~~~~~~ 158 (248)
T PF06977_consen 92 TIDDDTTSLDRAD--------VQKI-SLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP----GGFDLFVS 158 (248)
T ss_dssp EE----TT--EEE--------EEEE-E---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-----SS--EEE
T ss_pred EEeccccccchhh--------ceEE-ecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc----Cccceeec
Confidence 8844321111100 0000 000112345568999999988777777777667777764311 00000000
Q ss_pred e------ecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecC
Q 000270 438 V------LSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPR 499 (1749)
Q Consensus 438 ~------l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~ 499 (1749)
. .......+.+++++|.. +.+++....+..|.++|..
T Consensus 159 ~~~~~~~~~~~~~d~S~l~~~p~t-------------------------~~lliLS~es~~l~~~d~~ 201 (248)
T PF06977_consen 159 DDQDLDDDKLFVRDLSGLSYDPRT-------------------------GHLLILSDESRLLLELDRQ 201 (248)
T ss_dssp E-HHHH-HT--SS---EEEEETTT-------------------------TEEEEEETTTTEEEEE-TT
T ss_pred cccccccccceeccccceEEcCCC-------------------------CeEEEEECCCCeEEEECCC
Confidence 0 11233456777777754 3566667777777777743
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.12 E-value=2.6 Score=49.77 Aligned_cols=255 Identities=14% Similarity=0.152 Sum_probs=127.8
Q ss_pred CCCcEEEEEeCCCeEEEEECCC-CceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCC
Q 000270 295 SNNALVASASNDCIIRVWRLPD-GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP 373 (1749)
Q Consensus 295 PDg~lLASGS~DGtIrVWDl~t-gk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~ 373 (1749)
..++.|+.|+.+| |.++++.. ........ ...|..+...++-+ .|++-+ |+.|.++++..-..........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~---~llvLs-d~~l~~~~L~~l~~~~~~~~~~- 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELN---LLLVLS-DGQLYVYDLDSLEPVSTSAPLA- 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccC---EEEEEc-CCccEEEEchhhcccccccccc-
Confidence 3577899999888 89999833 33333332 33499999999765 444443 4999999987654333110000
Q ss_pred CCcccCCCCCCCCCCCCCCCceEEEE--EcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCC-cceeeecCCCCCeEEEE
Q 000270 374 SDAVAGRNMAPSSSAGPQSHQIFCCA--FNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN-HEIDVLSGHENDVNYVQ 450 (1749)
Q Consensus 374 ~~~~~g~~~~~~~s~~~h~~~Vt~La--fSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~-~~i~~l~gH~~~V~sVa 450 (1749)
..... ...........+..++ -...+...++......|.+|....... .. .....+ .-...+.+++
T Consensus 77 --~~~~~---~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~-----~f~~~~ke~-~lp~~~~~i~ 145 (275)
T PF00780_consen 77 --FPKSR---SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRN-----SFSKLLKEI-SLPDPPSSIA 145 (275)
T ss_pred --ccccc---cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcc-----cccceeEEE-EcCCCcEEEE
Confidence 00000 0000111222344444 112333333344456888888854210 01 122222 2236777888
Q ss_pred EcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCC
Q 000270 451 FSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRG 530 (1749)
Q Consensus 451 fSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g 530 (1749)
|.+ +.|+.|..++ ..+.|+.++.......... ..
T Consensus 146 ~~~----------------------------~~i~v~~~~~-f~~idl~~~~~~~l~~~~~-----------------~~ 179 (275)
T PF00780_consen 146 FLG----------------------------NKICVGTSKG-FYLIDLNTGSPSELLDPSD-----------------SS 179 (275)
T ss_pred EeC----------------------------CEEEEEeCCc-eEEEecCCCCceEEeCccC-----------------Cc
Confidence 874 4667666554 6677877544211110000 00
Q ss_pred CCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEE--EecCCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 000270 531 GPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVH--SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 608 (1749)
Q Consensus 531 ~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~--tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIr 608 (1749)
...........++..+... ++.+|++- +..-.+.| ..|+..+ .+.= .....++++.. + +|+..+ ++.|.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~-~~G~~~r~~~i~W-~~~p~~~~~~~--p-yli~~~-~~~iE 250 (275)
T PF00780_consen 180 SSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVN-KNGEPSRKSTIQW-SSAPQSVAYSS--P-YLIAFS-SNSIE 250 (275)
T ss_pred chhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEc-CCCCcCcccEEEc-CCchhEEEEEC--C-EEEEEC-CCEEE
Confidence 0001111122334444443 45666653 23333334 3555443 2222 22445666643 3 444444 45699
Q ss_pred EEeCCCCceEEEEee
Q 000270 609 VWDIWEGIPIRIYEI 623 (1749)
Q Consensus 609 VWDl~tGk~l~tl~~ 623 (1749)
||++.+|++++++..
T Consensus 251 V~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 251 VRSLETGELVQTIPL 265 (275)
T ss_pred EEECcCCcEEEEEEC
Confidence 999999999999874
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.29 Score=63.44 Aligned_cols=160 Identities=16% Similarity=0.129 Sum_probs=101.2
Q ss_pred ECCCCCEEEEE-eCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEe-------------------------
Q 000270 251 FDRSGRYVITG-SDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS------------------------- 304 (1749)
Q Consensus 251 FSPDG~~LATG-S~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS------------------------- 304 (1749)
+++||+.|... -..+.|.+.|.++.+...++.- .+.-..++++++|+++++.+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 56777766433 3357788888888777666553 22445667777877776664
Q ss_pred ---------------CCCeEEEEECCC----C-ceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcc
Q 000270 305 ---------------NDCIIRVWRLPD----G-LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF 364 (1749)
Q Consensus 305 ---------------~DGtIrVWDl~t----g-k~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~ 364 (1749)
.++.|.|.|..+ + ..+..+. -......++++||++ +.++++..+.+|.|.|+.+.+.
T Consensus 279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGk--ylyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGK--YFIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred HHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCC--EEEEeCCCCCcEEEEEChhhhh
Confidence 124577777766 3 3344443 455678899999998 4566777799999999987543
Q ss_pred cceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCC
Q 000270 365 SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACK 423 (1749)
Q Consensus 365 l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t 423 (1749)
...-.+ .+...+.+. -.-.......+|.++|..+.+-.-|..|..|++.+
T Consensus 356 ~~~~~~-~~~~~vvae--------vevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 356 LFDGKI-KPRDAVVAE--------PELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhccC-CccceEEEe--------eccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 110000 000000000 00122345678999998888888899999999864
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.04 E-value=1.1 Score=52.48 Aligned_cols=249 Identities=12% Similarity=0.134 Sum_probs=137.3
Q ss_pred eEEEEeccCCCcceEEEeecCCCc-EEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEE
Q 000270 330 VTAIAFSPRPGSVYQLLSSSDDGT-CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFV 408 (1749)
Q Consensus 330 VtsIaFSPdg~~~~~LaSgS~DGt-IrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~La 408 (1749)
...|+|+|... ..++.+-.-|+ ..++|..+.+....+.... ..+..-.-.|||||.+|.
T Consensus 70 ~Hgi~~~p~~~--ravafARrPGtf~~vfD~~~~~~pv~~~s~~------------------~RHfyGHGvfs~dG~~LY 129 (366)
T COG3490 70 GHGIAFHPALP--RAVAFARRPGTFAMVFDPNGAQEPVTLVSQE------------------GRHFYGHGVFSPDGRLLY 129 (366)
T ss_pred cCCeecCCCCc--ceEEEEecCCceEEEECCCCCcCcEEEeccc------------------CceeecccccCCCCcEEE
Confidence 34577777654 34555555555 4578888877665553211 111122346999999998
Q ss_pred EecC-----CCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCE
Q 000270 409 TGSS-----DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDN 483 (1749)
Q Consensus 409 SGs~-----DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~ 483 (1749)
+.-. .|.|-|||.+.. ...+..+..|.-....+.+.+++ ..
T Consensus 130 ATEndfd~~rGViGvYd~r~~--------fqrvgE~~t~GiGpHev~lm~DG--------------------------rt 175 (366)
T COG3490 130 ATENDFDPNRGVIGVYDAREG--------FQRVGEFSTHGIGPHEVTLMADG--------------------------RT 175 (366)
T ss_pred eecCCCCCCCceEEEEecccc--------cceecccccCCcCcceeEEecCC--------------------------cE
Confidence 7643 378999999642 33455677777777788888887 44
Q ss_pred EEEEeCCCcEEEE-ecCCCCCCccccccccccccCCCCCCCCC-CCCCCCCcc--ccc--CCCCCeeEEEEcCCCCEEEE
Q 000270 484 IVTCSRDGSAIIW-IPRSRRSHPKAARWTQAYHLKVPPPPMPP-QPPRGGPRQ--RIL--PTPRGVNMIVWSLDNRFVLA 557 (1749)
Q Consensus 484 LaSgS~DGtIrIW-Dl~s~k~~~~~~~~~~~~~l~v~~~~~~~-~~~~g~~i~--~l~--~h~~~VtsVafSPDG~~LAT 557 (1749)
++.+ +|-|..- |...-+ + .+..-.+.+.. ....+..+. ++. .+...|..++..+||+.++.
T Consensus 176 lvva--nGGIethpdfgR~~-l----------NldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfg 242 (366)
T COG3490 176 LVVA--NGGIETHPDFGRTE-L----------NLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFG 242 (366)
T ss_pred EEEe--CCceecccccCccc-c----------chhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEE
Confidence 4443 2333332 111000 0 00000000000 001122221 112 23456888999999887765
Q ss_pred EeCCCe-----EEEEECCCCceEEEec-------CCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEeee-
Q 000270 558 AIMDCR-----ICVWNAADGSLVHSLT-------GHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS- 624 (1749)
Q Consensus 558 Gs~DGt-----I~VWDl~tgklv~tL~-------gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~- 624 (1749)
+-..|- -.|=-...|+.+.-+. .-...|-+|+.+-.++.+.+|+-..+...+||..+|..+..-...
T Consensus 243 cQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d 322 (366)
T COG3490 243 CQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD 322 (366)
T ss_pred EEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc
Confidence 543221 1111112344433332 123457788888767777777777778899999999988655432
Q ss_pred ---eccCCCEEEEEcCCCeEEEEE
Q 000270 625 ---RFRDGASIILSDDVGQLYILN 645 (1749)
Q Consensus 625 ---~~sDG~~LAsgd~DG~I~IWd 645 (1749)
....+.-+++++.+|.+.++.
T Consensus 323 aaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 323 AAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred cccceeccCceEEecCCceEEecc
Confidence 222555566677778888774
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.23 Score=62.80 Aligned_cols=199 Identities=16% Similarity=0.100 Sum_probs=110.3
Q ss_pred eEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCC-CcEEEEEcCCCcccceeecCCCCCcccCCCCCCCC
Q 000270 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD-GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1749)
Q Consensus 308 tIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~D-GtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~ 386 (1749)
.+.+=|.. |.....+..-...+..-+|+|++....++..-... ..+.++++.++.....+..
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~---------------- 236 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF---------------- 236 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc----------------
Confidence 44444543 55555665566678888999998754333333333 4689999998875544421
Q ss_pred CCCCCCCceEEEEEcCCCCEEEEe-cCCCc--EEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccc
Q 000270 387 SAGPQSHQIFCCAFNANGTVFVTG-SSDTL--ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLA 463 (1749)
Q Consensus 387 s~~~h~~~Vt~LafSPDG~~LaSG-s~DGt--VrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~ 463 (1749)
.+.-..-+|+|||+.|+.. ..||. |.++|+.+.. +..+..-.+.-..=.|+|+|
T Consensus 237 -----~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~----------~~~Lt~~~gi~~~Ps~spdG-------- 293 (425)
T COG0823 237 -----NGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN----------LPRLTNGFGINTSPSWSPDG-------- 293 (425)
T ss_pred -----CCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc----------ceecccCCccccCccCCCCC--------
Confidence 2223456899999877654 44565 5666665422 11122222222244577877
Q ss_pred cCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCe
Q 000270 464 DSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGV 543 (1749)
Q Consensus 464 ~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~V 543 (1749)
...+++.+..|.-.||-+... +....++......-
T Consensus 294 -----------------~~ivf~Sdr~G~p~I~~~~~~----------------------------g~~~~riT~~~~~~ 328 (425)
T COG0823 294 -----------------SKIVFTSDRGGRPQIYLYDLE----------------------------GSQVTRLTFSGGGN 328 (425)
T ss_pred -----------------CEEEEEeCCCCCcceEEECCC----------------------------CCceeEeeccCCCC
Confidence 134555666776666644320 11112222222233
Q ss_pred eEEEEcCCCCEEEEEeCC-Ce--EEEEECCCCceEEEecCCCCCeEEEEEcC
Q 000270 544 NMIVWSLDNRFVLAAIMD-CR--ICVWNAADGSLVHSLTGHTESTYVLDVHP 592 (1749)
Q Consensus 544 tsVafSPDG~~LATGs~D-Gt--I~VWDl~tgklv~tL~gH~~~VtsLafSP 592 (1749)
..-.|||||++|+..+.. |. |.+.|+.++..++.+.. ......-.|.+
T Consensus 329 ~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~-~~~~e~ps~~~ 379 (425)
T COG0823 329 SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTS-TYLNESPSWAP 379 (425)
T ss_pred cCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccc-cccCCCCCcCC
Confidence 367899999999987743 43 77777766664444432 22233445666
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.27 Score=50.27 Aligned_cols=103 Identities=18% Similarity=0.252 Sum_probs=71.7
Q ss_pred EEEEEECC---CC-CEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEE
Q 000270 246 VYCAIFDR---SG-RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS 321 (1749)
Q Consensus 246 Vt~VaFSP---DG-~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~ 321 (1749)
|+++++.. || +.|++|+.|..|+||+-. ..+..+. -.+.|++|+-... ..++.+..+|+|-||+- ...+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 56666544 44 589999999999999965 5666665 3567888887766 56899999999999974 33344
Q ss_pred EecCCCCceEEEEe-ccCCCcceEEEeecCCCcEE
Q 000270 322 VLRGHTAAVTAIAF-SPRPGSVYQLLSSSDDGTCR 355 (1749)
Q Consensus 322 tL~gHs~~VtsIaF-SPdg~~~~~LaSgS~DGtIr 355 (1749)
.++.... ++++++ .-++.+..-|++|-.+|.|-
T Consensus 76 RiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 4443333 555554 44444455789998888764
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.53 Score=57.27 Aligned_cols=142 Identities=11% Similarity=0.132 Sum_probs=90.2
Q ss_pred CCEEEEEeC----------CcEEEEEECCCC----eEEEEE--ccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCc
Q 000270 255 GRYVITGSD----------DRLVKIWSMETA----YCLASC--RGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL 318 (1749)
Q Consensus 255 G~~LATGS~----------DGtVrIWDl~Tg----~~l~tL--~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk 318 (1749)
-.+|+.|.. .|.|.++++... ..+..+ ....++|++|+-. ++. |+++. .+.|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence 467777743 299999999884 122222 2357889999877 454 44443 4689999998777
Q ss_pred -eEEEec-CCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCC-CcccceeecCCCCCcccCCCCCCCCCCCCCCCce
Q 000270 319 -PISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY-SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395 (1749)
Q Consensus 319 -~l~tL~-gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~t-g~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~V 395 (1749)
.+.... .....++++....+ ++++|.....|.++.+.. ...+..+. .......+
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~~~-----~I~vgD~~~sv~~~~~~~~~~~l~~va------------------~d~~~~~v 175 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVFKN-----YILVGDAMKSVSLLRYDEENNKLILVA------------------RDYQPRWV 175 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEETT-----EEEEEESSSSEEEEEEETTTE-EEEEE------------------EESS-BEE
T ss_pred cchhhheecceEEEEEEecccc-----EEEEEEcccCEEEEEEEccCCEEEEEE------------------ecCCCccE
Confidence 443322 12336777776643 788888888888875543 21122221 01234568
Q ss_pred EEEEEcCCCCEEEEecCCCcEEEEeCC
Q 000270 396 FCCAFNANGTVFVTGSSDTLARVWNAC 422 (1749)
Q Consensus 396 t~LafSPDG~~LaSGs~DGtVrIWDl~ 422 (1749)
+++.|-+++..++++..+|.|.++...
T Consensus 176 ~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 176 TAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 899998777799999999999999885
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.83 E-value=1.9 Score=52.34 Aligned_cols=233 Identities=11% Similarity=0.064 Sum_probs=124.8
Q ss_pred EEcCCCc-EEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeec
Q 000270 292 AVSSNNA-LVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYI 370 (1749)
Q Consensus 292 afSPDg~-lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~ 370 (1749)
.|.++.. ++.+--..+.|.-|+..+++. ..+. +.+.+.++.....+. .|+++ ..| +.+++..++.....+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g---~Lv~~-~~g-~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGG---RLIAC-EHG-VRLLDPDTGGKITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCCC---eEEEE-ccc-cEEEeccCCceeEEecc
Confidence 4666655 444555567888888776643 2333 233344444444433 44443 333 66777765554322211
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecC---------CCcEEEEeCCCCCCCCCCCCCcceeeecC
Q 000270 371 PRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS---------DTLARVWNACKPNTDDSDQPNHEIDVLSG 441 (1749)
Q Consensus 371 ~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~---------DGtVrIWDl~t~~~~~s~~~~~~i~~l~g 441 (1749)
.. ........+.+...|+|.+.++... ...-.||.+.. ....+..+..
T Consensus 104 ~~---------------~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p--------~g~~~~l~~~ 160 (307)
T COG3386 104 PE---------------DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP--------DGGVVRLLDD 160 (307)
T ss_pred cc---------------CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC--------CCCEEEeecC
Confidence 10 0112244667888888875554332 00113333320 1233444455
Q ss_pred CCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCC
Q 000270 442 HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPP 521 (1749)
Q Consensus 442 H~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~ 521 (1749)
+-..-+.|+|+|++. .++++=+..+.|..|++.... +.
T Consensus 161 ~~~~~NGla~SpDg~-------------------------tly~aDT~~~~i~r~~~d~~~--g~--------------- 198 (307)
T COG3386 161 DLTIPNGLAFSPDGK-------------------------TLYVADTPANRIHRYDLDPAT--GP--------------- 198 (307)
T ss_pred cEEecCceEECCCCC-------------------------EEEEEeCCCCeEEEEecCccc--Cc---------------
Confidence 555667899999871 234444455777777665200 00
Q ss_pred CCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCC-eEEEEECCCCceEEEecCCCCCeEEEEEcCCC-CcEEE
Q 000270 522 PMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC-RICVWNAADGSLVHSLTGHTESTYVLDVHPFN-PRIAM 599 (1749)
Q Consensus 522 ~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DG-tI~VWDl~tgklv~tL~gH~~~VtsLafSPdd-~rlLa 599 (1749)
.........+....+..-.++...+|.+.+++..+| .|.+|+.. |+++..+.-....+++++|--.+ ..+++
T Consensus 199 -----~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~i 272 (307)
T COG3386 199 -----IGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYI 272 (307)
T ss_pred -----cCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEE
Confidence 000001111112334455677888998886665554 99999988 99999888776778888884322 34444
Q ss_pred EEe
Q 000270 600 SAG 602 (1749)
Q Consensus 600 Sgs 602 (1749)
|+.
T Consensus 273 Ts~ 275 (307)
T COG3386 273 TSA 275 (307)
T ss_pred Eec
Confidence 443
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=12 Score=50.78 Aligned_cols=113 Identities=6% Similarity=-0.000 Sum_probs=68.4
Q ss_pred CCEEEEEECCCCCEEEEEeC-----CcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCC------CeEEEE
Q 000270 244 NAVYCAIFDRSGRYVITGSD-----DRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND------CIIRVW 312 (1749)
Q Consensus 244 ~~Vt~VaFSPDG~~LATGS~-----DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~D------GtIrVW 312 (1749)
-.+..+.+||||++||.+.+ ...|+|-|+.+|..+....... -..++|++|++.|+....+ ..|.+|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 34667889999999986533 3479999999886443322121 1569999998866665442 368888
Q ss_pred ECCCC--ceEEEecCCCCceE-EEEeccCCCcceEEEe--ecCCCcEEEEEcC
Q 000270 313 RLPDG--LPISVLRGHTAAVT-AIAFSPRPGSVYQLLS--SSDDGTCRIWDAR 360 (1749)
Q Consensus 313 Dl~tg--k~l~tL~gHs~~Vt-sIaFSPdg~~~~~LaS--gS~DGtIrIWDl~ 360 (1749)
++.++ +-...+........ .+..+.++.. .++. ...++.+.+|+..
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~--l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHY--VVIHLASATTSEVLLLDAE 255 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCE--EEEEEECCccccEEEEECc
Confidence 88887 33444443333333 3333335552 2222 2334678888853
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.38 Score=63.27 Aligned_cols=152 Identities=15% Similarity=0.143 Sum_probs=85.3
Q ss_pred CCEEEEEECCCCCEEEEEe------CCc--EEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCC---------
Q 000270 244 NAVYCAIFDRSGRYVITGS------DDR--LVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND--------- 306 (1749)
Q Consensus 244 ~~Vt~VaFSPDG~~LATGS------~DG--tVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~D--------- 306 (1749)
..+...+++|+|+.+|... .|+ .|.+++.. +.....+.+. ..+.-.|+|||..|++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678899999999887654 244 45555542 2232223332 38889999999888777533
Q ss_pred ---CeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEE---EEcCCCcccceeecCCCCCcccCC
Q 000270 307 ---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI---WDARYSQFSPRIYIPRPSDAVAGR 380 (1749)
Q Consensus 307 ---GtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrI---WDl~tg~~l~~l~~~~~~~~~~g~ 380 (1749)
+.|.+.++..+.... ...+.|..+.|+|||. .++... +|.|.+ -....|. ..+..+.
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~---RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~~~-------- 489 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGV---RAAMII-GGKVYLAVVEQTEDGQ--YALTNPR-------- 489 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCC---EEEEEE-CCEEEEEEEEeCCCCc--eeecccE--------
Confidence 223333443333222 2356799999999998 444333 466666 3323332 1110000
Q ss_pred CCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeC
Q 000270 381 NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA 421 (1749)
Q Consensus 381 ~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl 421 (1749)
.....-...+..+.|..++.++ ++..++...+|.+
T Consensus 490 -----~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 490 -----EVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred -----EeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 0001122235778999999855 5555555555654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.47 E-value=2.8 Score=53.47 Aligned_cols=144 Identities=15% Similarity=0.101 Sum_probs=76.9
Q ss_pred cCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCC
Q 000270 283 GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 362 (1749)
Q Consensus 283 gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg 362 (1749)
........|.++|+|++++++ .||...|+.....+... .+.....+|.+.+ .+|+-...+.|.|+.--..
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n----~yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN----RYAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS----EEEEE-TTS-EEEEETTEE
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCc----cEEEEECCCeEEEEEcCcc
Confidence 344557899999999998884 57788888744333322 2334567888854 4677777888999632222
Q ss_pred cccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCC
Q 000270 363 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 442 (1749)
Q Consensus 363 ~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH 442 (1749)
.....+.. ...+..+-. |.+|++.+. +.|.+||+.+ ...+..+...
T Consensus 100 ~~~k~i~~---------------------~~~~~~If~---G~LL~~~~~-~~i~~yDw~~---------~~~i~~i~v~ 145 (443)
T PF04053_consen 100 EVVKSIKL---------------------PFSVEKIFG---GNLLGVKSS-DFICFYDWET---------GKLIRRIDVS 145 (443)
T ss_dssp -TT--------------------------SS-EEEEE----SSSEEEEET-TEEEEE-TTT-----------EEEEESS-
T ss_pred ccceEEcC---------------------CcccceEEc---CcEEEEECC-CCEEEEEhhH---------cceeeEEecC
Confidence 22222211 111333322 777777654 4899999965 3344444432
Q ss_pred CCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecC
Q 000270 443 ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPR 499 (1749)
Q Consensus 443 ~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~ 499 (1749)
.|..|.|++++ ++++..+.+ .+.|++..
T Consensus 146 --~vk~V~Ws~~g--------------------------~~val~t~~-~i~il~~~ 173 (443)
T PF04053_consen 146 --AVKYVIWSDDG--------------------------ELVALVTKD-SIYILKYN 173 (443)
T ss_dssp --E-EEEEE-TTS--------------------------SEEEEE-S--SEEEEEE-
T ss_pred --CCcEEEEECCC--------------------------CEEEEEeCC-eEEEEEec
Confidence 48999999987 677766644 67776654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.45 E-value=16 Score=49.71 Aligned_cols=112 Identities=9% Similarity=-0.015 Sum_probs=73.1
Q ss_pred CCEEEEEeCCcEEEEEECCCCeEEEEEccCCCC--------eEEEEEcC----------------CCcEEEEEeCCCeEE
Q 000270 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHEGD--------ITDLAVSS----------------NNALVASASNDCIIR 310 (1749)
Q Consensus 255 G~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~--------VtsLafSP----------------Dg~lLASGS~DGtIr 310 (1749)
+..|..++.++.|.-.|..||+.+-.+.-.... ...+++.. .+..|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 556777788899999999999988876532210 11222221 234788888999999
Q ss_pred EEECCCCceEEEecCCCCceE-------------EEEeccC--CCcceEEEeecC----------CCcEEEEEcCCCccc
Q 000270 311 VWRLPDGLPISVLRGHTAAVT-------------AIAFSPR--PGSVYQLLSSSD----------DGTCRIWDARYSQFS 365 (1749)
Q Consensus 311 VWDl~tgk~l~tL~gHs~~Vt-------------sIaFSPd--g~~~~~LaSgS~----------DGtIrIWDl~tg~~l 365 (1749)
-.|..+|+.+..+. ..+.|. .+.-.|- ++ .+++|+. +|.|+-+|+.+|+.+
T Consensus 274 ALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g---~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 274 ALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGT---TVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred EEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECC---EEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 99999999887663 222221 0111110 11 4555532 688999999999998
Q ss_pred ceeec
Q 000270 366 PRIYI 370 (1749)
Q Consensus 366 ~~l~~ 370 (1749)
..+..
T Consensus 350 W~~~~ 354 (764)
T TIGR03074 350 WAWDP 354 (764)
T ss_pred eEEec
Confidence 88764
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=95.29 E-value=2.8 Score=56.47 Aligned_cols=133 Identities=15% Similarity=0.188 Sum_probs=86.7
Q ss_pred CCcEEEEE-eCCCeEEEEECCCCceEEEecCCCCc-eEEEEeccCCC----cceEEEeecCCCcEEEEEcCCCcccceee
Q 000270 296 NNALVASA-SNDCIIRVWRLPDGLPISVLRGHTAA-VTAIAFSPRPG----SVYQLLSSSDDGTCRIWDARYSQFSPRIY 369 (1749)
Q Consensus 296 Dg~lLASG-S~DGtIrVWDl~tgk~l~tL~gHs~~-VtsIaFSPdg~----~~~~LaSgS~DGtIrIWDl~tg~~l~~l~ 369 (1749)
+.++|+.- .....|+-.|+..|+.+..+..|... |. .|.|+.+ .....+.|-.+..|..||.+-.. ..+.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~--~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~--~k~v 567 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVV--DIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG--NKLV 567 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCccee--EecccccccccCCCceEEEECCCceEEeccCCCC--Ccee
Confidence 33444443 34578999999999999999877643 44 4444422 01145667778889999988532 1110
Q ss_pred cCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEE
Q 000270 370 IPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYV 449 (1749)
Q Consensus 370 ~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sV 449 (1749)
... ...-.......|++-+.+| +||+|+.+|.||+||-.. ......+.+...+|.+|
T Consensus 568 ~~~-------------~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g---------~~AKT~lp~lG~pI~~i 624 (794)
T PF08553_consen 568 DSQ-------------SKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLG---------KRAKTALPGLGDPIIGI 624 (794)
T ss_pred ecc-------------ccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccc---------hhhhhcCCCCCCCeeEE
Confidence 000 0011234457888888777 689999999999999421 12334466778999999
Q ss_pred EEcCCC
Q 000270 450 QFSGCA 455 (1749)
Q Consensus 450 afSpdg 455 (1749)
..+.+|
T Consensus 625 Dvt~DG 630 (794)
T PF08553_consen 625 DVTADG 630 (794)
T ss_pred EecCCC
Confidence 999988
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.041 Score=72.80 Aligned_cols=105 Identities=22% Similarity=0.360 Sum_probs=78.4
Q ss_pred CCCEEEEEeCCcEEEEEECCCCeE-EEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEE
Q 000270 254 SGRYVITGSDDRLVKIWSMETAYC-LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTA 332 (1749)
Q Consensus 254 DG~~LATGS~DGtVrIWDl~Tg~~-l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~Vts 332 (1749)
-+.+++.|+..|.|-..|+.+.-. +..=..-.++|++++|+.+|.+++.|-.+|.|.+||+..++.++.+..|..++++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 355788888889898888765311 1111224689999999999999999999999999999999999999888877776
Q ss_pred EEeccCCCcceEEEeecCCCcEEEEEcC
Q 000270 333 IAFSPRPGSVYQLLSSSDDGTCRIWDAR 360 (1749)
Q Consensus 333 IaFSPdg~~~~~LaSgS~DGtIrIWDl~ 360 (1749)
+-+.--.+....++++...|. +|.+.
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 655433222226778777776 67654
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=1.1 Score=58.97 Aligned_cols=116 Identities=20% Similarity=0.188 Sum_probs=64.0
Q ss_pred CCCCeEEEEEcCCCcEEEEEe------CCC--eEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCC-CcE
Q 000270 284 HEGDITDLAVSSNNALVASAS------NDC--IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD-GTC 354 (1749)
Q Consensus 284 Hs~~VtsLafSPDg~lLASGS------~DG--tIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~D-GtI 354 (1749)
....+.+.+++|+|+.+|..- .|. .|.+++. .+.....+.+. ..+.-.|+|++. .|++.... ..+
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~---~lw~v~dg~~~~ 421 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDAD---AVWVVVDGNTVV 421 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCC---ceEEEecCcceE
Confidence 334688999999999887765 244 4555554 23332223332 378899999976 45554432 223
Q ss_pred EEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEE
Q 000270 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV 418 (1749)
Q Consensus 355 rIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrI 418 (1749)
++.+-.....+..+.+. +.... ....+.|..+.|||||..||... +|.|.+
T Consensus 422 ~v~~~~~~gql~~~~vd-------~ge~~-----~~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 422 RVIRDPATGQLARTPVD-------ASAVA-----SRVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred EEeccCCCceEEEEecc-------Cchhh-----hccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 33322111111111110 00000 01244699999999999888765 467766
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=95.02 E-value=2.5 Score=51.52 Aligned_cols=174 Identities=14% Similarity=0.189 Sum_probs=104.1
Q ss_pred cEEEEEECCCCeEEEEEccC-CCCeEEEE---EcCC----CcEEEEEeC----------CCeEEEEECCCC----ceEEE
Q 000270 265 RLVKIWSMETAYCLASCRGH-EGDITDLA---VSSN----NALVASASN----------DCIIRVWRLPDG----LPISV 322 (1749)
Q Consensus 265 GtVrIWDl~Tg~~l~tL~gH-s~~VtsLa---fSPD----g~lLASGS~----------DGtIrVWDl~tg----k~l~t 322 (1749)
..|+|.|..+.+.+.++.-. ...|++++ |..+ ..+||.|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 36889998888877765422 23344444 3332 468887753 288999999884 22222
Q ss_pred e--cCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCc-ccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEE
Q 000270 323 L--RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ-FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCA 399 (1749)
Q Consensus 323 L--~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~-~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~La 399 (1749)
+ ....++|++|+-.. + .|+++. .+.|.+|++...+ ....-.. .....+.++.
T Consensus 82 i~~~~~~g~V~ai~~~~--~---~lv~~~-g~~l~v~~l~~~~~l~~~~~~-------------------~~~~~i~sl~ 136 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSFN--G---RLVVAV-GNKLYVYDLDNSKTLLKKAFY-------------------DSPFYITSLS 136 (321)
T ss_dssp EEEEEESS-EEEEEEET--T---EEEEEE-TTEEEEEEEETTSSEEEEEEE--------------------BSSSEEEEE
T ss_pred EEEEeecCcceEhhhhC--C---EEEEee-cCEEEEEEccCcccchhhhee-------------------cceEEEEEEe
Confidence 2 23578899988773 2 444333 3789999998777 3322211 0112355555
Q ss_pred EcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeee--cCCCCCeEEEEEcCCCcccccccccCCCCCCCCccccc
Q 000270 400 FNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVL--SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNS 477 (1749)
Q Consensus 400 fSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l--~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s 477 (1749)
.. +.+|++|.....|.++..... ...+..+ ......+.++.|-.++
T Consensus 137 ~~--~~~I~vgD~~~sv~~~~~~~~--------~~~l~~va~d~~~~~v~~~~~l~d~---------------------- 184 (321)
T PF03178_consen 137 VF--KNYILVGDAMKSVSLLRYDEE--------NNKLILVARDYQPRWVTAAEFLVDE---------------------- 184 (321)
T ss_dssp EE--TTEEEEEESSSSEEEEEEETT--------TE-EEEEEEESS-BEEEEEEEE-SS----------------------
T ss_pred cc--ccEEEEEEcccCEEEEEEEcc--------CCEEEEEEecCCCccEEEEEEecCC----------------------
Confidence 44 569999998888888865320 1112222 2234457777776544
Q ss_pred ccCCCEEEEEeCCCcEEEEecC
Q 000270 478 WFCHDNIVTCSRDGSAIIWIPR 499 (1749)
Q Consensus 478 ~~~~~~LaSgS~DGtIrIWDl~ 499 (1749)
+.++.+..+|.+.++...
T Consensus 185 ----~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 185 ----DTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp ----SEEEEEETTSEEEEEEE-
T ss_pred ----cEEEEEcCCCeEEEEEEC
Confidence 589999999999998775
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.99 E-value=4.5 Score=49.21 Aligned_cols=145 Identities=10% Similarity=0.062 Sum_probs=78.4
Q ss_pred EECCCCC-EEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEec----
Q 000270 250 IFDRSGR-YVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR---- 324 (1749)
Q Consensus 250 aFSPDG~-~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~---- 324 (1749)
.|.++.. ++.+--..+.|.-|+..++.. ..+. +.+.+.++..-..+..|+++.. -+.+++..++..+..+.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence 3667666 445555678999999987643 3333 2334455554444545555433 36777776666533332
Q ss_pred C-CCCceEEEEeccCCCcceEEEeecCCC----------cEEEEEcC-CCcccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000270 325 G-HTAAVTAIAFSPRPGSVYQLLSSSDDG----------TCRIWDAR-YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1749)
Q Consensus 325 g-Hs~~VtsIaFSPdg~~~~~LaSgS~DG----------tIrIWDl~-tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~ 392 (1749)
+ -....+.+...|+|. +..+.... .-.||-+. .+.....+ ..+-
T Consensus 107 ~~~~~r~ND~~v~pdG~----~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~--------------------~~~~ 162 (307)
T COG3386 107 GLPLNRPNDGVVDPDGR----IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLL--------------------DDDL 162 (307)
T ss_pred CCCcCCCCceeEcCCCC----EEEeCCCccccCccccCCcceEEEEcCCCCEEEee--------------------cCcE
Confidence 1 113456777788775 33332221 11233333 22211111 1122
Q ss_pred CceEEEEEcCCCCEEEEecC-CCcEEEEeCC
Q 000270 393 HQIFCCAFNANGTVFVTGSS-DTLARVWNAC 422 (1749)
Q Consensus 393 ~~Vt~LafSPDG~~LaSGs~-DGtVrIWDl~ 422 (1749)
..-+.|+||||++.|..+.. .+.|.-|++.
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 33568999999987777655 4778888774
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.091 Score=66.47 Aligned_cols=79 Identities=18% Similarity=0.167 Sum_probs=69.7
Q ss_pred CCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceE-EEEeccCCCcceEEEeecCCCcEEEEEcCCCc
Q 000270 285 EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVT-AIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ 363 (1749)
Q Consensus 285 s~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~Vt-sIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~ 363 (1749)
...|.-+.|+|.-.+||.+..+|.|.+..+. .+.+.++.-|...++ +++|.|||+ .||+|-.||+|++.|+.++.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGk---llaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGK---LLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCC---EEEEEecCCeEEEEEccCCC
Confidence 3467889999999999999999999999987 777888887887787 999999998 99999999999999999887
Q ss_pred ccce
Q 000270 364 FSPR 367 (1749)
Q Consensus 364 ~l~~ 367 (1749)
.+..
T Consensus 96 ~l~~ 99 (665)
T KOG4640|consen 96 RLVS 99 (665)
T ss_pred ceec
Confidence 5543
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=94.80 E-value=1.4 Score=55.24 Aligned_cols=172 Identities=10% Similarity=0.157 Sum_probs=98.6
Q ss_pred ccccceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEE--cc------CCCCeEEEEEcC-----C
Q 000270 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASC--RG------HEGDITDLAVSS-----N 296 (1749)
Q Consensus 230 ~~~~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL--~g------Hs~~VtsLafSP-----D 296 (1749)
.+.+.+...+....+.|++++.|.=| ++|.|..+|.+.|.|+.....+..- .. ....|+++.|+- |
T Consensus 73 ~~gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D 151 (395)
T PF08596_consen 73 KEGFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGD 151 (395)
T ss_dssp SEEEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTS
T ss_pred ccccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCC
Confidence 34567777788889999999998555 9999999999999999887777652 22 345688898873 3
Q ss_pred C---cEEEEEeCCCeEEEEECC--C-Cce----EEEecCCCCceEEEE-eccCCC-----------------cceEEEee
Q 000270 297 N---ALVASASNDCIIRVWRLP--D-GLP----ISVLRGHTAAVTAIA-FSPRPG-----------------SVYQLLSS 348 (1749)
Q Consensus 297 g---~lLASGS~DGtIrVWDl~--t-gk~----l~tL~gHs~~VtsIa-FSPdg~-----------------~~~~LaSg 348 (1749)
+ -+|++|...|.+.+|.+. . +.. ......+.+.|..|. |..+.. ....++..
T Consensus 152 ~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv 231 (395)
T PF08596_consen 152 GYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV 231 (395)
T ss_dssp SSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE
T ss_pred cccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE
Confidence 3 478899999999999874 1 221 222224566766665 322211 01123333
Q ss_pred cCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEc-----CCCCEEEEecCCCcEEEEeCC
Q 000270 349 SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN-----ANGTVFVTGSSDTLARVWNAC 422 (1749)
Q Consensus 349 S~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafS-----PDG~~LaSGs~DGtVrIWDl~ 422 (1749)
..+..|+++...+.+...... ........+++- ..+..|++-..+|.|++|.+-
T Consensus 232 vSe~~irv~~~~~~k~~~K~~--------------------~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP 290 (395)
T PF08596_consen 232 VSESDIRVFKPPKSKGAHKSF--------------------DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP 290 (395)
T ss_dssp E-SSEEEEE-TT---EEEEE---------------------SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT
T ss_pred EcccceEEEeCCCCcccceee--------------------ccccccceEEEEeecccCCceEEEEEECCCcEEEEECC
Confidence 445668998887666444332 011122334442 356678888899999999984
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=2 Score=56.62 Aligned_cols=63 Identities=10% Similarity=0.147 Sum_probs=38.9
Q ss_pred CCCEEEEEeCC------CeEEEEECCC-C--ceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEeCCCCc
Q 000270 551 DNRFVLAAIMD------CRICVWNAAD-G--SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDG--KTIVWDIWEGI 616 (1749)
Q Consensus 551 DG~~LATGs~D------GtI~VWDl~t-g--klv~tL~gH~~~VtsLafSPdd~rlLaSgs~DG--tIrVWDl~tGk 616 (1749)
+|+..+.|+.+ ..|..||..+ . ..+..+.........+++ ++++.+.||.|| .+..||+.+.+
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~---~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH---DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE---CCEEEEEeeecceeehhhcCccccc
Confidence 56777777654 2467899876 3 333444433333333333 678888999888 66677776654
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=94.34 E-value=1.2 Score=45.75 Aligned_cols=100 Identities=21% Similarity=0.279 Sum_probs=67.5
Q ss_pred eEEEEEcC---CC-cEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCc
Q 000270 288 ITDLAVSS---NN-ALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ 363 (1749)
Q Consensus 288 VtsLafSP---Dg-~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~ 363 (1749)
|++|++.. || ..|++||.|..||||+ ....+..+. -+..|++++-...+ .|+.+..+|+|-+|+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~-e~~~v~~L~~~~~~----~F~Y~l~NGTVGvY~~~~R- 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEIT-ETDKVTSLCSLGGG----RFAYALANGTVGVYDRSQR- 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEe-cccceEEEEEcCCC----EEEEEecCCEEEEEeCcce-
Confidence 66777765 32 5899999999999998 346666666 45667777777664 6999999999999975321
Q ss_pred ccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcC---CC-CEEEEecCCCcEE
Q 000270 364 FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA---NG-TVFVTGSSDTLAR 417 (1749)
Q Consensus 364 ~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSP---DG-~~LaSGs~DGtVr 417 (1749)
+.++. ....++++++.. || .-|++|-.+|.|-
T Consensus 74 -lWRiK---------------------SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 -LWRIK---------------------SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -eeeec---------------------cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 22221 223366666543 33 3688888888764
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=94.30 E-value=2.8 Score=49.51 Aligned_cols=170 Identities=9% Similarity=-0.035 Sum_probs=99.0
Q ss_pred ccceEEEEccCCC-CEEEEEECCCCCEEEEEeCCc--EEEEEECCCCeEEEEEccC-CCCeEEEEEcCCCcEEEEEeCCC
Q 000270 232 KMQNIKRVRGHRN-AVYCAIFDRSGRYVITGSDDR--LVKIWSMETAYCLASCRGH-EGDITDLAVSSNNALVASASNDC 307 (1749)
Q Consensus 232 ~~~~i~tL~GH~~-~Vt~VaFSPDG~~LATGS~DG--tVrIWDl~Tg~~l~tL~gH-s~~VtsLafSPDg~lLASGS~DG 307 (1749)
.++.++++..... -...+.|..+|.++-+.+.-| .|+.+|+.+|+.+....-. .----.|+.. ++++..-.-.++
T Consensus 32 ~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~ 110 (264)
T PF05096_consen 32 SYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEG 110 (264)
T ss_dssp EEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSS
T ss_pred eeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCC
Confidence 3455666553333 345788878888877777655 7999999999887664321 1112233333 445555566789
Q ss_pred eEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCC
Q 000270 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSS 387 (1749)
Q Consensus 308 tIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s 387 (1749)
...+||..+.+.+..+. ..+.=+.++ .++. .|+.......|.++|..+.+....+.+....
T Consensus 111 ~~f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~---~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g------------- 171 (264)
T PF05096_consen 111 TGFVYDPNTLKKIGTFP-YPGEGWGLT--SDGK---RLIMSDGSSRLYFLDPETFKEVRTIQVTDNG------------- 171 (264)
T ss_dssp EEEEEETTTTEEEEEEE--SSS--EEE--ECSS---CEEEE-SSSEEEEE-TTT-SEEEEEE-EETT-------------
T ss_pred eEEEEccccceEEEEEe-cCCcceEEE--cCCC---EEEEECCccceEEECCcccceEEEEEEEECC-------------
Confidence 99999999998888876 345667777 4444 5666666678999999887776666542111
Q ss_pred CCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Q 000270 388 AGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKP 424 (1749)
Q Consensus 388 ~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~ 424 (1749)
..-..++-+.|- +|...|=.-....|...|..++
T Consensus 172 --~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG 205 (264)
T PF05096_consen 172 --RPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETG 205 (264)
T ss_dssp --EE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-
T ss_pred --EECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCC
Confidence 111235555554 5555554444555555666554
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.15 E-value=2.8 Score=55.27 Aligned_cols=64 Identities=13% Similarity=0.231 Sum_probs=38.7
Q ss_pred CCCCEEEEEeCCC-----eEEEEECCCCceEE--EecCCCCCeEEEEEcCCCCcEEEEEeCCCc-----EEEEeCCCCc
Q 000270 550 LDNRFVLAAIMDC-----RICVWNAADGSLVH--SLTGHTESTYVLDVHPFNPRIAMSAGYDGK-----TIVWDIWEGI 616 (1749)
Q Consensus 550 PDG~~LATGs~DG-----tI~VWDl~tgklv~--tL~gH~~~VtsLafSPdd~rlLaSgs~DGt-----IrVWDl~tGk 616 (1749)
-++...+.|+.|+ +|..||..+.+... .+......+..+.+ ++.+.+.||.||. |..||..+.+
T Consensus 474 ~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~---~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 474 LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL---GGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE---CCEEEEEecccCccccceeEEcCCCCCc
Confidence 3778888888776 37778887655433 23323332322332 6788888887764 5566665544
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.05 E-value=7.4 Score=44.74 Aligned_cols=47 Identities=6% Similarity=0.026 Sum_probs=41.4
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcC
Q 000270 546 IVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHP 592 (1749)
Q Consensus 546 VafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~gH~~~VtsLafSP 592 (1749)
+++..+|.+.++.-..++|...|..+|+.+.++.-.+..|++++|--
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 44566888888888899999999999999999998899999999954
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.91 E-value=2.7 Score=55.38 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=23.0
Q ss_pred CCCEEEEEeCCC--eEEEEECCCCceEEEecCCC
Q 000270 551 DNRFVLAAIMDC--RICVWNAADGSLVHSLTGHT 582 (1749)
Q Consensus 551 DG~~LATGs~DG--tI~VWDl~tgklv~tL~gH~ 582 (1749)
+|+..++|+.++ .+..||..+.+-...-..|.
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence 788889999888 77788887766554444443
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=93.84 E-value=2.1 Score=51.87 Aligned_cols=156 Identities=16% Similarity=0.180 Sum_probs=80.9
Q ss_pred ccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECC-CCc
Q 000270 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP-DGL 318 (1749)
Q Consensus 240 ~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~-tgk 318 (1749)
.+-.+.+..+..++||++|++++.-..+.-|+--...-...-+.-...|..|.|.|++.+.+.+ ..|.|++=+.. ...
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 3445789999999999999999887777788864322222223356889999999998876654 78888887722 221
Q ss_pred eEEE----ecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCc
Q 000270 319 PISV----LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1749)
Q Consensus 319 ~l~t----L~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~ 394 (1749)
.... +....-.+..++|.++.. ..+ ++..|.|. ...+.|+.=... .....-...
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~---~wa-~gg~G~l~-~S~DgGktW~~~-----------------~~~~~~~~n 277 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNE---IWA-VGGSGTLL-VSTDGGKTWQKD-----------------RVGENVPSN 277 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS----EEE-EESTT-EE-EESSTTSS-EE------------------GGGTTSSS-
T ss_pred ccccccCCcccCceeeEEEEecCCCC---EEE-EeCCccEE-EeCCCCccceEC-----------------ccccCCCCc
Confidence 1111 112233478999998864 444 44445443 344444322211 111223445
Q ss_pred eEEEEEcCCCCEEEEecCCCcEEEE
Q 000270 395 IFCCAFNANGTVFVTGSSDTLARVW 419 (1749)
Q Consensus 395 Vt~LafSPDG~~LaSGs~DGtVrIW 419 (1749)
++.+.|..+.+-||.| .+|.|.-|
T Consensus 278 ~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 278 LYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp --EEEEEETTEEEEE--STTEEEEE
T ss_pred eEEEEEcCCCceEEEC-CCcEEEEe
Confidence 7889998776667766 57776554
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=93.81 E-value=12 Score=44.35 Aligned_cols=146 Identities=17% Similarity=0.117 Sum_probs=82.4
Q ss_pred CeEEEEEcCCCcEEEEEe--C-CCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEE-cCCC
Q 000270 287 DITDLAVSSNNALVASAS--N-DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD-ARYS 362 (1749)
Q Consensus 287 ~VtsLafSPDg~lLASGS--~-DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWD-l~tg 362 (1749)
.+.+.+++++++.+|... . ...+.++.. +.....+. ....++.-.|.+++. ..+....+...+++. ...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~---~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGW---VWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCC---EEEEEcCCCceEEEEecCCC
Confidence 789999999999887766 2 334555543 33333322 223788889999964 444445555566663 2333
Q ss_pred cccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEec---CCCcEEEEeCCCCCCCCCCCCCcceeee
Q 000270 363 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS---SDTLARVWNACKPNTDDSDQPNHEIDVL 439 (1749)
Q Consensus 363 ~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs---~DGtVrIWDl~t~~~~~s~~~~~~i~~l 439 (1749)
...... +.. ......|..+.+||||..+|... .++.|.|--+..............+...
T Consensus 99 ~~~~~~-v~~----------------~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~ 161 (253)
T PF10647_consen 99 TGEPVE-VDW----------------PGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVA 161 (253)
T ss_pred cceeEE-ecc----------------cccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEec
Confidence 222111 100 00111799999999999877655 3567777655322111001111222233
Q ss_pred cCCCCCeEEEEEcCCC
Q 000270 440 SGHENDVNYVQFSGCA 455 (1749)
Q Consensus 440 ~gH~~~V~sVafSpdg 455 (1749)
......+..+.|.++.
T Consensus 162 ~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 162 PPLLSDVTDVAWSDDS 177 (253)
T ss_pred ccccCcceeeeecCCC
Confidence 3445688899999876
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=93.78 E-value=1.9 Score=50.83 Aligned_cols=155 Identities=18% Similarity=0.169 Sum_probs=92.0
Q ss_pred CEEEEEECCCCCEEEEEe---CCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEE-CCCCceE
Q 000270 245 AVYCAIFDRSGRYVITGS---DDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR-LPDGLPI 320 (1749)
Q Consensus 245 ~Vt~VaFSPDG~~LATGS---~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWD-l~tgk~l 320 (1749)
.+...+++++|+.+|... ....+.++... .....+. -...++...|++++.+.+....+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 578899999999877655 33455555543 3333321 223788899999988877777777777774 3334322
Q ss_pred E-Eec--CCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCccc-ceeecCCCCCcccCCCCCCCCCCCCCCCceE
Q 000270 321 S-VLR--GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS-PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 396 (1749)
Q Consensus 321 ~-tL~--gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l-~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt 396 (1749)
. .+. .-.+.|+.+.++|||....+++....++.|.+--+....-- .... ..+..........++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l------------~~~~~~~~~~~~~v~ 169 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRL------------TGPRRVAPPLLSDVT 169 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCccee------------ccceEecccccCcce
Confidence 1 121 11228999999999985433344445677777655422211 1110 000111122345789
Q ss_pred EEEEcCCCCEEEEecCCC
Q 000270 397 CCAFNANGTVFVTGSSDT 414 (1749)
Q Consensus 397 ~LafSPDG~~LaSGs~DG 414 (1749)
.++|.+++.+++.+...+
T Consensus 170 ~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 170 DVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred eeeecCCCEEEEEeCCCC
Confidence 999999998777765544
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=93.67 E-value=23 Score=43.57 Aligned_cols=102 Identities=18% Similarity=0.208 Sum_probs=56.2
Q ss_pred EEEEEECCCCCEEEEEeCCcEEEEEECCCCeE---EEEE----ccCCCCeEEEEEcCC----CcEEEEEeCC--------
Q 000270 246 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYC---LASC----RGHEGDITDLAVSSN----NALVASASND-------- 306 (1749)
Q Consensus 246 Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~---l~tL----~gHs~~VtsLafSPD----g~lLASGS~D-------- 306 (1749)
-+.|+|.|||+++++- ..|.|++++ ..+.. +..+ .........|+|+|+ +.+.++.+..
T Consensus 4 P~~~a~~pdG~l~v~e-~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAE-RSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEEE-TTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEEe-CCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 4789999999887764 599999999 44443 3333 234567899999994 4444444421
Q ss_pred CeEEEEECCCC-------ceE-EEecC---CCCceEEEEeccCCCcceEEEeecCCC
Q 000270 307 CIIRVWRLPDG-------LPI-SVLRG---HTAAVTAIAFSPRPGSVYQLLSSSDDG 352 (1749)
Q Consensus 307 GtIrVWDl~tg-------k~l-~tL~g---Hs~~VtsIaFSPdg~~~~~LaSgS~DG 352 (1749)
..|.-|.+..+ +.+ ..+.. .......|+|.||+. ++++.+..+
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~---LYvs~G~~~ 135 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK---LYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE---EEEEEB-TT
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc---EEEEeCCCC
Confidence 23444444333 111 11222 233456799999884 444444433
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.81 Score=57.25 Aligned_cols=137 Identities=10% Similarity=0.108 Sum_probs=95.1
Q ss_pred EEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCc--E-----EEEEeCCCeEEEEECCCC-c-eEEEecCCC--
Q 000270 259 ITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA--L-----VASASNDCIIRVWRLPDG-L-PISVLRGHT-- 327 (1749)
Q Consensus 259 ATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~--l-----LASGS~DGtIrVWDl~tg-k-~l~tL~gHs-- 327 (1749)
.++..-..|+-.|++.|+.+..+.-|.. |.-+.+.|+.+ . -+.|-.|..|.-||.+-. . .+....+|.
T Consensus 350 ~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~ 428 (644)
T KOG2395|consen 350 MDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS 428 (644)
T ss_pred eCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc
Confidence 3455556788889999999999987766 88888888654 1 234566788999997532 2 333334442
Q ss_pred --CceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCC
Q 000270 328 --AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT 405 (1749)
Q Consensus 328 --~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~ 405 (1749)
....|++-..+| ++|+|+.+|-|++||- .+....+. +.+-+.+|..|..+.+|+
T Consensus 429 ~k~nFsc~aTT~sG----~IvvgS~~GdIRLYdr-i~~~AKTA-------------------lPgLG~~I~hVdvtadGK 484 (644)
T KOG2395|consen 429 TKNNFSCFATTESG----YIVVGSLKGDIRLYDR-IGRRAKTA-------------------LPGLGDAIKHVDVTADGK 484 (644)
T ss_pred cccccceeeecCCc----eEEEeecCCcEEeehh-hhhhhhhc-------------------ccccCCceeeEEeeccCc
Confidence 345566666665 7999999999999996 33322221 234567799999999999
Q ss_pred EEEEecCCCcEEEEeC
Q 000270 406 VFVTGSSDTLARVWNA 421 (1749)
Q Consensus 406 ~LaSGs~DGtVrIWDl 421 (1749)
+|++.+ +..+.+.++
T Consensus 485 wil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 485 WILATC-KTYLLLIDT 499 (644)
T ss_pred EEEEec-ccEEEEEEE
Confidence 988665 666766665
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.61 E-value=1.3 Score=55.44 Aligned_cols=141 Identities=11% Similarity=0.127 Sum_probs=87.6
Q ss_pred EEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCC-------EEEEecCCCcE
Q 000270 344 QLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT-------VFVTGSSDTLA 416 (1749)
Q Consensus 344 ~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~-------~LaSGs~DGtV 416 (1749)
+|.++..-..|+-.|+..|+.+....+.. .|.-+.+.|+.+ .-++|-.+..|
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~---------------------di~mv~~t~d~K~~Ql~~e~TlvGLs~n~v 406 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFED---------------------DINMVDITPDFKFAQLTSEQTLVGLSDNSV 406 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccC---------------------CcceeeccCCcchhcccccccEEeecCCce
Confidence 55666666778888999998877664321 145555555432 12346678889
Q ss_pred EEEeCCCCCCCCCCCCCcceeeecCCC----CCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCc
Q 000270 417 RVWNACKPNTDDSDQPNHEIDVLSGHE----NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGS 492 (1749)
Q Consensus 417 rIWDl~t~~~~~s~~~~~~i~~l~gH~----~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGt 492 (1749)
.-||.+-. ....+....+|. ....|.+-..+ .+||+||.+|.
T Consensus 407 friDpRv~-------~~~kl~~~q~kqy~~k~nFsc~aTT~s---------------------------G~IvvgS~~Gd 452 (644)
T KOG2395|consen 407 FRIDPRVQ-------GKNKLAVVQSKQYSTKNNFSCFATTES---------------------------GYIVVGSLKGD 452 (644)
T ss_pred EEeccccc-------CcceeeeeeccccccccccceeeecCC---------------------------ceEEEeecCCc
Confidence 99998631 111222223331 23334433333 48999999999
Q ss_pred EEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 000270 493 AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 569 (1749)
Q Consensus 493 IrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~DGtI~VWDl 569 (1749)
|++||-.. . .....+.+...+|..|..+.||++|++.+. ..+.+.++
T Consensus 453 IRLYdri~-~----------------------------~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t 499 (644)
T KOG2395|consen 453 IRLYDRIG-R----------------------------RAKTALPGLGDAIKHVDVTADGKWILATCK-TYLLLIDT 499 (644)
T ss_pred EEeehhhh-h----------------------------hhhhcccccCCceeeEEeeccCcEEEEecc-cEEEEEEE
Confidence 99998532 1 011123455678999999999999987664 55666664
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.18 Score=67.02 Aligned_cols=100 Identities=16% Similarity=0.296 Sum_probs=73.2
Q ss_pred CEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccCCCCCeeEEEEcCCCCEEEEEeCC
Q 000270 482 DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD 561 (1749)
Q Consensus 482 ~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsVafSPDG~~LATGs~D 561 (1749)
..++.|+..|.+...|+...- .+...-....++|++++|+.+|++++.|-.+
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL----------------------------~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~ 151 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNL----------------------------GPLHQNERVQGPVTSVAFNQDGSLLLAGLGD 151 (1206)
T ss_pred eeEEEEcCchhhhhhhhhccc----------------------------chhhcCCccCCcceeeEecCCCceeccccCC
Confidence 468889999999888876411 0001112245689999999999999999999
Q ss_pred CeEEEEECCCCceEEEecCCCCCeEEEEE---cCCCCcEEEEEeCCCcEEEEeC
Q 000270 562 CRICVWNAADGSLVHSLTGHTESTYVLDV---HPFNPRIAMSAGYDGKTIVWDI 612 (1749)
Q Consensus 562 GtI~VWDl~tgklv~tL~gH~~~VtsLaf---SPdd~rlLaSgs~DGtIrVWDl 612 (1749)
|.|.+||+..++.++.+.-|..+++++-+ .. ++..++++..-|. +|.+
T Consensus 152 G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~-~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 152 GHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTS-QNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CcEEEEEccCCcceeeeeecCCccceEEEEEEeC-CCcEEEEccCCCc--eEEE
Confidence 99999999999999998877666555433 33 3446777766665 6765
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.50 E-value=6.1 Score=46.99 Aligned_cols=162 Identities=9% Similarity=0.075 Sum_probs=100.7
Q ss_pred EEEEEECCCCCEEEEEeCCcEEEEEECCCCeE--EEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEe
Q 000270 246 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYC--LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL 323 (1749)
Q Consensus 246 Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~--l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL 323 (1749)
..|+-|...+.+...++.. .-+|...-... .+.+.|-...|.+|.|+|+.+.|++......-.||=...|..+.++
T Consensus 46 f~~a~~k~~~~~~~~~~r~--~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti 123 (316)
T COG3204 46 FPCAWFKAGQTNGLDLSRY--IARYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI 123 (316)
T ss_pred eeeEEEeccccccccccch--hhhccCCceEEEeccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEe
Confidence 4444444433344444444 44554432111 1124455666999999999999999888888888877889988876
Q ss_pred cC-CCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcC
Q 000270 324 RG-HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA 402 (1749)
Q Consensus 324 ~g-Hs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSP 402 (1749)
.- .-...-+|.+..++. ++++--.++.+.++.+........+... ..+.......+...-.++|.|
T Consensus 124 PL~g~~DpE~Ieyig~n~---fvi~dER~~~l~~~~vd~~t~~~~~~~~----------~i~L~~~~k~N~GfEGlA~d~ 190 (316)
T COG3204 124 PLTGFSDPETIEYIGGNQ---FVIVDERDRALYLFTVDADTTVISAKVQ----------KIPLGTTNKKNKGFEGLAWDP 190 (316)
T ss_pred cccccCChhHeEEecCCE---EEEEehhcceEEEEEEcCCccEEeccce----------EEeccccCCCCcCceeeecCC
Confidence 52 123345677877764 6666667888888877655332222100 000111112255678899999
Q ss_pred CCCEEEEecCCCcEEEEeCC
Q 000270 403 NGTVFVTGSSDTLARVWNAC 422 (1749)
Q Consensus 403 DG~~LaSGs~DGtVrIWDl~ 422 (1749)
....|.++-.-.-+.||.+.
T Consensus 191 ~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 191 VDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred CCceEEEEEccCCcEEEEEe
Confidence 88888888777778888774
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.38 E-value=44 Score=45.84 Aligned_cols=73 Identities=19% Similarity=0.254 Sum_probs=49.6
Q ss_pred CCCeEEEEEcCCC------cEEEEEeCCCeEEEEECCCCceEEEe--cCCCCceEEEEeccCCCc------ceEEEeecC
Q 000270 285 EGDITDLAVSSNN------ALVASASNDCIIRVWRLPDGLPISVL--RGHTAAVTAIAFSPRPGS------VYQLLSSSD 350 (1749)
Q Consensus 285 s~~VtsLafSPDg------~lLASGS~DGtIrVWDl~tgk~l~tL--~gHs~~VtsIaFSPdg~~------~~~LaSgS~ 350 (1749)
...|.|+++.++. ++++.|+.|+++++..+.-..++..+ ++-...+.++.+-+.... ..+|.+|-.
T Consensus 582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~ 661 (1205)
T KOG1898|consen 582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLR 661 (1205)
T ss_pred ceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEeccc
Confidence 5678899998864 58999999999999998766666554 344455555555443221 246677777
Q ss_pred CCcEEEE
Q 000270 351 DGTCRIW 357 (1749)
Q Consensus 351 DGtIrIW 357 (1749)
+|.+.-+
T Consensus 662 NGvllR~ 668 (1205)
T KOG1898|consen 662 NGVLLRF 668 (1205)
T ss_pred ccEEEEE
Confidence 7765444
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=93.32 E-value=13 Score=45.05 Aligned_cols=161 Identities=16% Similarity=0.170 Sum_probs=80.8
Q ss_pred ccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCC
Q 000270 282 RGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY 361 (1749)
Q Consensus 282 ~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~t 361 (1749)
..-.+.+..+..++||++|++++....+.-|+-....-...-+.....|..+.|.|++. |......|.|++=+...
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~----lw~~~~Gg~~~~s~~~~ 216 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN----LWMLARGGQIQFSDDPD 216 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-----EEEEETTTEEEEEE-TT
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCC----EEEEeCCcEEEEccCCC
Confidence 34557899999999999998887776777888533222222334568899999999975 44455888888876211
Q ss_pred CcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecC
Q 000270 362 SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG 441 (1749)
Q Consensus 362 g~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~g 441 (1749)
. ...... ...........+..++|.+++...|+|+. |.+. .....+ +..........
T Consensus 217 ~--~~~w~~-------------~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~-~S~DgG------ktW~~~~~~~~ 273 (302)
T PF14870_consen 217 D--GETWSE-------------PIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLL-VSTDGG------KTWQKDRVGEN 273 (302)
T ss_dssp E--EEEE----------------B-TTSS--S-EEEEEESSSS-EEEEEST-T-EE-EESSTT------SS-EE-GGGTT
T ss_pred C--cccccc-------------ccCCcccCceeeEEEEecCCCCEEEEeCC-ccEE-EeCCCC------ccceECccccC
Confidence 1 011100 00001123345899999999888887764 4432 233222 22222222333
Q ss_pred CCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEE
Q 000270 442 HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 496 (1749)
Q Consensus 442 H~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIW 496 (1749)
-...++.|.|.+. +.-+..+.+|.|.-|
T Consensus 274 ~~~n~~~i~f~~~---------------------------~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 274 VPSNLYRIVFVNP---------------------------DKGFVLGQDGVLLRY 301 (302)
T ss_dssp SSS---EEEEEET---------------------------TEEEEE-STTEEEEE
T ss_pred CCCceEEEEEcCC---------------------------CceEEECCCcEEEEe
Confidence 4556777888653 355666788887765
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.21 E-value=4.3 Score=47.73 Aligned_cols=98 Identities=15% Similarity=0.179 Sum_probs=66.9
Q ss_pred EEEECCC-CCEEEEEeCCcE-EEEEECCCCeEEEEEccCCCC--eEEEEEcCCCcEEEEEeCC-----CeEEEEECCCC-
Q 000270 248 CAIFDRS-GRYVITGSDDRL-VKIWSMETAYCLASCRGHEGD--ITDLAVSSNNALVASASND-----CIIRVWRLPDG- 317 (1749)
Q Consensus 248 ~VaFSPD-G~~LATGS~DGt-VrIWDl~Tg~~l~tL~gHs~~--VtsLafSPDg~lLASGS~D-----GtIrVWDl~tg- 317 (1749)
.|+|+|. .+-++.+-.-|+ ..|+|..+.+.+.++...++. --.=.|||||.+|...-.| |.|-|||...+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 4678885 345666666565 467888887766654422211 1123599999998876444 78999998755
Q ss_pred ceEEEecCCCCceEEEEeccCCCcceEEEee
Q 000270 318 LPISVLRGHTAAVTAIAFSPRPGSVYQLLSS 348 (1749)
Q Consensus 318 k~l~tL~gHs~~VtsIaFSPdg~~~~~LaSg 348 (1749)
+.+..+..|.-.-..+.|.+||. .|+.+
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGr---tlvva 179 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGR---TLVVA 179 (366)
T ss_pred ceecccccCCcCcceeEEecCCc---EEEEe
Confidence 55677788888888999999997 55443
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.10 E-value=46 Score=45.35 Aligned_cols=123 Identities=16% Similarity=0.037 Sum_probs=73.6
Q ss_pred CCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEe-cCCCCceEEEEeccCCCcce---EEEeecCCCcEEEEEcC
Q 000270 285 EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL-RGHTAAVTAIAFSPRPGSVY---QLLSSSDDGTCRIWDAR 360 (1749)
Q Consensus 285 s~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL-~gHs~~VtsIaFSPdg~~~~---~LaSgS~DGtIrIWDl~ 360 (1749)
.+.++..+.+.+...++.++.++.+...++..+.....- ......|.|+.++|-+.... ++++|..+..+.+.-..
T Consensus 487 p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~ 566 (1096)
T KOG1897|consen 487 PGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFL 566 (1096)
T ss_pred CCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEEC
Confidence 445566666666677888887777877777666522111 12346899999998765444 78888777666554322
Q ss_pred CCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCC
Q 000270 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNAC 422 (1749)
Q Consensus 361 tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~ 422 (1749)
....+..... .....-...|.-.+|-.|..+|.++..||.+.-|-+.
T Consensus 567 pd~~~~~~~~---------------l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d 613 (1096)
T KOG1897|consen 567 PDLILITHEQ---------------LSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLD 613 (1096)
T ss_pred CCcceeeeec---------------cCCCccchheeeEEeeccceEEEEEcCCceEEEEEEE
Confidence 2111111100 0001112335556666678899999999998776654
|
|
| >cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.12 Score=54.25 Aligned_cols=61 Identities=18% Similarity=0.370 Sum_probs=45.0
Q ss_pred CCCHHHHHHHhhhCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcC
Q 000270 1679 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1739 (1749)
Q Consensus 1679 PmDl~tI~~RLen~~Yr~~~~~~~Dv~li~~N~~~fN~~~s~~~~~a~~l~~~~~~~l~~~ 1739 (1749)
|.||.-++++|++++|+++.+|.+||-+|+.=+..=-+-.-++-+.-.++.-+|+++|.+.
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~v 119 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESV 119 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHh
Confidence 8999999999999999999999999999987553332222233333445566777777654
|
ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.63 E-value=7.2 Score=51.54 Aligned_cols=105 Identities=15% Similarity=0.129 Sum_probs=57.6
Q ss_pred CCCCCEEEEEeCC------cEEEEEECCCCeEEE--EEccCCCCeEEEEEcCCCcEEEEEeCC------CeEEEEECCCC
Q 000270 252 DRSGRYVITGSDD------RLVKIWSMETAYCLA--SCRGHEGDITDLAVSSNNALVASASND------CIIRVWRLPDG 317 (1749)
Q Consensus 252 SPDG~~LATGS~D------GtVrIWDl~Tg~~l~--tL~gHs~~VtsLafSPDg~lLASGS~D------GtIrVWDl~tg 317 (1749)
+..+.+++.||.+ ..|..+|..++.-.. .+. +...-.++++. ++.+.++||.| .++..||..+.
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCC
Confidence 3345667777766 368888888763322 222 22223344444 56888999988 35667777665
Q ss_pred ceEE--EecCCCCceEEEEeccCCCcceEEEeecCCCc-----EEEEEcCCCc
Q 000270 318 LPIS--VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGT-----CRIWDARYSQ 363 (1749)
Q Consensus 318 k~l~--tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGt-----IrIWDl~tg~ 363 (1749)
+-.. .+....... +++.. ++. +.|+||.||. |-.||..+.+
T Consensus 360 ~W~~~a~M~~~R~~~-~v~~l-~g~---iYavGG~dg~~~l~svE~YDp~~~~ 407 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDF-GVAVL-DGK---LYAVGGFDGEKSLNSVECYDPVTNK 407 (571)
T ss_pred ceeccCCccCccccc-eeEEE-CCE---EEEEeccccccccccEEEecCCCCc
Confidence 4222 121111111 22222 222 7788888864 5667766554
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.37 Score=54.86 Aligned_cols=102 Identities=17% Similarity=0.114 Sum_probs=62.0
Q ss_pred CEEEEEeCCCcEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcccccC-CCCCeeEEEEcCCCCEEEEEeC
Q 000270 482 DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP-TPRGVNMIVWSLDNRFVLAAIM 560 (1749)
Q Consensus 482 ~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~-h~~~VtsVafSPDG~~LATGs~ 560 (1749)
..+++|+.+|.|.+|...-.- ........ .....+.|.--.++.+..+++.
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g----------------------------~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~ 122 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEG----------------------------AHSDRVCSGEESIDLGIPNGRDSSLGCVGAQ 122 (238)
T ss_pred ceEEeecccceEEEecCCccc----------------------------hHHHhhhcccccceeccccccccceeEEecc
Confidence 579999999999999766200 00000111 1112333444456678899999
Q ss_pred CCeEEEEECCCCceEEEecCCC-CCeEEEEEcCCCCcEEEEE--eCCCcEEEEeC
Q 000270 561 DCRICVWNAADGSLVHSLTGHT-ESTYVLDVHPFNPRIAMSA--GYDGKTIVWDI 612 (1749)
Q Consensus 561 DGtI~VWDl~tgklv~tL~gH~-~~VtsLafSPdd~rlLaSg--s~DGtIrVWDl 612 (1749)
||.|+.|++.-++.+.....|+ .++..+..+. ..++++.+ |.|..++.|++
T Consensus 123 dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 123 DGRIRACNIKPNKVLGYVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred CCceeeeccccCceeeeeccccCCCcceeEEec-CCceEEeeccccchhhhhcch
Confidence 9999999999888888777777 3433333333 33444444 45555555554
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.51 Score=53.76 Aligned_cols=102 Identities=16% Similarity=0.138 Sum_probs=72.4
Q ss_pred CCEEEEEeCCCeEEEEECCC-CceEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeeeccCCC
Q 000270 552 NRFVLAAIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRDGA 630 (1749)
Q Consensus 552 G~~LATGs~DGtI~VWDl~t-gklv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tGk~l~tl~~~~~sDG~ 630 (1749)
+..|++|+.+|.|++|+..- |.....+..-...|-++.-.-.++.+.++++.||.|+.|++.-++.+.....+.+-++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 46789999999999999752 11111112222233333222234458889999999999999988888777666667899
Q ss_pred EEEEEcCCCeEEEEECCCCcccc
Q 000270 631 SIILSDDVGQLYILNTGQGESQK 653 (1749)
Q Consensus 631 ~LAsgd~DG~I~IWdl~tGe~~k 653 (1749)
.+++.+.++.|.+|++..+..++
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k 172 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLK 172 (238)
T ss_pred eeEEecCCceEEeeccccchhhh
Confidence 99999999999999887665543
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=91.77 E-value=27 Score=47.33 Aligned_cols=78 Identities=19% Similarity=0.328 Sum_probs=54.7
Q ss_pred CCeEEEEEcCCCcEEEEEeCCCeEEEEECC----------CCce--E-EEe--------cCCCCceEEEEeccCCCcceE
Q 000270 286 GDITDLAVSSNNALVASASNDCIIRVWRLP----------DGLP--I-SVL--------RGHTAAVTAIAFSPRPGSVYQ 344 (1749)
Q Consensus 286 ~~VtsLafSPDg~lLASGS~DGtIrVWDl~----------tgk~--l-~tL--------~gHs~~VtsIaFSPdg~~~~~ 344 (1749)
-.|..|.++++|++||..|..|. .|-.+. .|+. . +++ ..+...|..+.|+|.+.....
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 46889999999999999988764 343332 1211 1 111 134568899999998643347
Q ss_pred EEeecCCCcEEEEEcCCCcc
Q 000270 345 LLSSSDDGTCRIWDARYSQF 364 (1749)
Q Consensus 345 LaSgS~DGtIrIWDl~tg~~ 364 (1749)
|++-..|++|++||+.....
T Consensus 164 l~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred EEEEecCCEEEEEecCCCCC
Confidence 88889999999999975543
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.25 E-value=9.5 Score=47.00 Aligned_cols=153 Identities=13% Similarity=0.069 Sum_probs=87.5
Q ss_pred CCCEEEEEECCCCCEEEEEeCCcEEEE-EECCCCeEEEEE-ccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceE
Q 000270 243 RNAVYCAIFDRSGRYVITGSDDRLVKI-WSMETAYCLASC-RGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI 320 (1749)
Q Consensus 243 ~~~Vt~VaFSPDG~~LATGS~DGtVrI-WDl~Tg~~l~tL-~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l 320 (1749)
.+.++++.+.+++.++++|.. |.+.. ++- .++....+ ..-...++++++.++++++++| ..|.+++=....|..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSR-GNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeCC-ceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 456889999999988877654 54432 222 22222222 2345678999999999877765 4576654333444332
Q ss_pred EEecC----CCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceE
Q 000270 321 SVLRG----HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 396 (1749)
Q Consensus 321 ~tL~g----Hs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt 396 (1749)
..... ....+.+++|.+++. ++.++.+|.|. .....++.-..+ .....-....+
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~----~~~~G~~G~v~-~S~d~G~tW~~~-----------------~~~~~~~~~~~ 306 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGE----IWAGGGNGTLL-VSKDGGKTWEKD-----------------PVGEEVPSNFY 306 (334)
T ss_pred ccccCCccccccceeeEEEcCCCC----EEEEcCCCeEE-EeCCCCCCCeEC-----------------CcCCCCCcceE
Confidence 22211 123578899998764 55566677554 333433321111 00011123577
Q ss_pred EEEEcCCCCEEEEecCCCcEEEEeC
Q 000270 397 CCAFNANGTVFVTGSSDTLARVWNA 421 (1749)
Q Consensus 397 ~LafSPDG~~LaSGs~DGtVrIWDl 421 (1749)
.+.|..++..+++| ..|.|..|+-
T Consensus 307 ~~~~~~~~~~~~~G-~~G~il~~~~ 330 (334)
T PRK13684 307 KIVFLDPEKGFVLG-QRGVLLRYVG 330 (334)
T ss_pred EEEEeCCCceEEEC-CCceEEEecC
Confidence 88888777776655 5788877764
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=90.80 E-value=31 Score=46.73 Aligned_cols=89 Identities=7% Similarity=0.084 Sum_probs=55.6
Q ss_pred CCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCC---CCCcceee--------ecCCCCCeEEEEEcCCCcccc
Q 000270 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD---QPNHEIDV--------LSGHENDVNYVQFSGCAVASR 459 (1749)
Q Consensus 391 h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~---~~~~~i~~--------l~gH~~~V~sVafSpdg~as~ 459 (1749)
-...|..|.++|+|.+||..|..|.+.+.=.+........ .......+ ...+...|..+.|+|.+.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~--- 159 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSE--- 159 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCC---
Confidence 3456899999999999999988765544333211000000 00000011 123455788899998751
Q ss_pred cccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCC
Q 000270 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 502 (1749)
Q Consensus 460 ~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k 502 (1749)
.+..|+.-..|+++|+||+....
T Consensus 160 --------------------~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 160 --------------------SDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred --------------------CCCeEEEEecCCEEEEEecCCCC
Confidence 23688999999999999997544
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=90.56 E-value=82 Score=42.87 Aligned_cols=73 Identities=12% Similarity=0.078 Sum_probs=46.1
Q ss_pred CeEEEEEcCCCcEEEEEeCC-----CeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCC-----CcEEE
Q 000270 287 DITDLAVSSNNALVASASND-----CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD-----GTCRI 356 (1749)
Q Consensus 287 ~VtsLafSPDg~lLASGS~D-----GtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~D-----GtIrI 356 (1749)
.+..+.|+||+++||.+... ..|++-|+.+|..+...-.... ..++|++|++. ++++...+ ..|.+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~--~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWT--FYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCE--EEEEEecCCCCCCCEEEE
Confidence 46678899999988876432 4688999988864332211221 56999999862 33333222 35677
Q ss_pred EEcCCCc
Q 000270 357 WDARYSQ 363 (1749)
Q Consensus 357 WDl~tg~ 363 (1749)
+++.++.
T Consensus 204 h~lgt~~ 210 (686)
T PRK10115 204 HTIGTPA 210 (686)
T ss_pred EECCCCh
Confidence 7777763
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.19 E-value=31 Score=41.31 Aligned_cols=171 Identities=12% Similarity=0.139 Sum_probs=112.6
Q ss_pred EccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEcc-CCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCC
Q 000270 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRG-HEGDITDLAVSSNNALVASASNDCIIRVWRLPDG 317 (1749)
Q Consensus 239 L~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~g-Hs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tg 317 (1749)
+.|-...|.++.|+|+.+.|++......-.||=...|..+.++.- .-..--.|.+..+|+++++-=.++.+.++.+..+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 455566699999999999999888888888888888999988642 1234456788888888888777888988887655
Q ss_pred ceEEE-------ec--CC-CCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCC
Q 000270 318 LPISV-------LR--GH-TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSS 387 (1749)
Q Consensus 318 k~l~t-------L~--gH-s~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s 387 (1749)
..+.. |. .+ ....-+++|.|... .|+.+-+..-+.||.+..+........ ... +...
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~---~l~~aKEr~P~~I~~~~~~~~~l~~~~--~~~--------~~~~ 227 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH---RLFVAKERNPIGIFEVTQSPSSLSVHA--SLD--------PTAD 227 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCc---eEEEEEccCCcEEEEEecCCccccccc--ccC--------cccc
Confidence 32211 11 12 45678899999876 778888888888887763321111100 000 0000
Q ss_pred CCCCCCceEEEEEcC-CCCEEEEecCCCcEEEEeCC
Q 000270 388 AGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNAC 422 (1749)
Q Consensus 388 ~~~h~~~Vt~LafSP-DG~~LaSGs~DGtVrIWDl~ 422 (1749)
..-.-..|.++.|.+ .+.+|+-+..++.|.-.|..
T Consensus 228 ~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 228 RDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred cceEeeccccceecCCCCcEEEEecCCceEEEEecC
Confidence 001123466788886 45677777777777777764
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=89.97 E-value=6.1 Score=49.49 Aligned_cols=173 Identities=11% Similarity=0.088 Sum_probs=84.6
Q ss_pred ECCCCCEEEEEe------CCcEEEEEECCCCeEEEEEccC---CCCeEEEEEcCCCcEEEEEeC----------------
Q 000270 251 FDRSGRYVITGS------DDRLVKIWSMETAYCLASCRGH---EGDITDLAVSSNNALVASASN---------------- 305 (1749)
Q Consensus 251 FSPDG~~LATGS------~DGtVrIWDl~Tg~~l~tL~gH---s~~VtsLafSPDg~lLASGS~---------------- 305 (1749)
.-|+|++++++- .-|-+.+.|-++...+...... ..--+++-|.|..+.++|...
T Consensus 137 clp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~ 216 (461)
T PF05694_consen 137 CLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLE 216 (461)
T ss_dssp E-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHH
T ss_pred ecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhh
Confidence 347898888752 2356888898888877776542 233467777887788887632
Q ss_pred ----CCeEEEEECCCCceEEEecCCC--CceEEEEeccCCCcceEEEeecCCCcEEEEEc-CCCcccceeecCCCCCccc
Q 000270 306 ----DCIIRVWRLPDGLPISVLRGHT--AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA-RYSQFSPRIYIPRPSDAVA 378 (1749)
Q Consensus 306 ----DGtIrVWDl~tgk~l~tL~gHs--~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl-~tg~~l~~l~~~~~~~~~~ 378 (1749)
..++.+||+.+.+.++++.-.. .....|.|..+....+-++.+.-.++|..|-- ..+.......+..+.....
T Consensus 217 ~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~ 296 (461)
T PF05694_consen 217 AGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE 296 (461)
T ss_dssp HH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred cccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence 3589999999999999886332 35678899887665555555555556665543 3443222221111111111
Q ss_pred CCCCCC-CCCCCCCCCceEEEEEcCCCCEEEEec-CCCcEEEEeCCC
Q 000270 379 GRNMAP-SSSAGPQSHQIFCCAFNANGTVFVTGS-SDTLARVWNACK 423 (1749)
Q Consensus 379 g~~~~~-~~s~~~h~~~Vt~LafSPDG~~LaSGs-~DGtVrIWDl~t 423 (1749)
+..... ...+..-..-|+.|..|.|.++|.+.+ ..|.|+.||+..
T Consensus 297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 111000 001111234589999999999887765 489999999964
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.94 E-value=2.6 Score=56.98 Aligned_cols=141 Identities=11% Similarity=0.044 Sum_probs=86.4
Q ss_pred CCCeEEEEEcCCCcEEEEEe--CCCeEEEEECCCCc--------eEE---EecCCCCceEEEEeccCCCcceEEEeecCC
Q 000270 285 EGDITDLAVSSNNALVASAS--NDCIIRVWRLPDGL--------PIS---VLRGHTAAVTAIAFSPRPGSVYQLLSSSDD 351 (1749)
Q Consensus 285 s~~VtsLafSPDg~lLASGS--~DGtIrVWDl~tgk--------~l~---tL~gHs~~VtsIaFSPdg~~~~~LaSgS~D 351 (1749)
.-.|..+...+|++..++.. .+-.|.++|+.+-. +++ +.........++.|.|.-. ...++...|
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp--~n~av~l~d 177 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP--LNSAVDLSD 177 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc--chhhhhccc
Confidence 34566777778877655543 33478899986531 111 1112334567888988653 245777888
Q ss_pred CcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCC
Q 000270 352 GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQ 431 (1749)
Q Consensus 352 GtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~ 431 (1749)
+.|++..+........ ...-...++|++|+|.|+.+++|...|++.-|...-..
T Consensus 178 lsl~V~~~~~~~~~v~--------------------s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~lei------ 231 (1405)
T KOG3630|consen 178 LSLRVKSTKQLAQNVT--------------------SFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEI------ 231 (1405)
T ss_pred cchhhhhhhhhhhhhc--------------------ccCcccceeeEEeccccceeeEecCCCeEEEeecccce------
Confidence 8888876543221110 12234568999999999999999999999988763210
Q ss_pred CCcceeeecCC-CCCeEEEEEcCC
Q 000270 432 PNHEIDVLSGH-ENDVNYVQFSGC 454 (1749)
Q Consensus 432 ~~~~i~~l~gH-~~~V~sVafSpd 454 (1749)
...+...... ...|.+|+|-..
T Consensus 232 -k~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 232 -KSEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred -eecccCCCcCCCcceeEEEEecc
Confidence 0111111111 467889999764
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=89.87 E-value=53 Score=39.68 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=53.7
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEec--CCCCCeEEEEEcC-----CCCcEEEEEeCCCcEEEEeCCCCc
Q 000270 544 NMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT--GHTESTYVLDVHP-----FNPRIAMSAGYDGKTIVWDIWEGI 616 (1749)
Q Consensus 544 tsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~--gH~~~VtsLafSP-----dd~rlLaSgs~DGtIrVWDl~tGk 616 (1749)
+...-.++...=+.|..-|.|-+||+ .|.+++.+. +.-..-+.|+..| ..+.+|+---.||+|..+|..+|+
T Consensus 204 tYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 204 TYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred EEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence 33333444444445556688999997 688888774 3334456676655 345777766679999999999998
Q ss_pred eEEEEee
Q 000270 617 PIRIYEI 623 (1749)
Q Consensus 617 ~l~tl~~ 623 (1749)
.+..+..
T Consensus 283 ~~g~L~~ 289 (336)
T TIGR03118 283 QLGQLLD 289 (336)
T ss_pred eeeeecC
Confidence 8876653
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=89.08 E-value=64 Score=44.22 Aligned_cols=72 Identities=7% Similarity=0.085 Sum_probs=45.0
Q ss_pred CcEEEEEeCCCeEEEEECCCCceEEEecCCCC--------ceEEEEeccCC-------------CcceEEEeecCCCcEE
Q 000270 297 NALVASASNDCIIRVWRLPDGLPISVLRGHTA--------AVTAIAFSPRP-------------GSVYQLLSSSDDGTCR 355 (1749)
Q Consensus 297 g~lLASGS~DGtIrVWDl~tgk~l~tL~gHs~--------~VtsIaFSPdg-------------~~~~~LaSgS~DGtIr 355 (1749)
+..|..++.++.|.-.|..+|+.+..+..... .+..+++.... .....++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 44555666677888888888887766543211 11223332110 0012677888999999
Q ss_pred EEEcCCCccccee
Q 000270 356 IWDARYSQFSPRI 368 (1749)
Q Consensus 356 IWDl~tg~~l~~l 368 (1749)
-.|..+|+....+
T Consensus 274 ALDA~TGk~~W~f 286 (764)
T TIGR03074 274 ALDADTGKLCEDF 286 (764)
T ss_pred EEECCCCCEEEEe
Confidence 9999999877655
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=89.00 E-value=0.97 Score=39.35 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=29.3
Q ss_pred CCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeE
Q 000270 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC 277 (1749)
Q Consensus 244 ~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~ 277 (1749)
..|.+++|+|...+||.|+.+|.|.|+.+ +++.
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 46999999999999999999999999998 4543
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=88.86 E-value=23 Score=44.79 Aligned_cols=149 Identities=13% Similarity=0.137 Sum_probs=86.4
Q ss_pred EEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCc-----eE
Q 000270 246 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL-----PI 320 (1749)
Q Consensus 246 Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk-----~l 320 (1749)
...+..+++|.+++.|..-..++-||--.-.-...-......++.+.|.+++.+++++ ..|.| +|....+. ..
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~~f 318 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDFDF 318 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccccce
Confidence 4556778899888887654444445542210011112335678999999999888766 45554 44444553 22
Q ss_pred EEecC--CCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEE
Q 000270 321 SVLRG--HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCC 398 (1749)
Q Consensus 321 ~tL~g--Hs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~L 398 (1749)
..+.. ....++++.|.+++. ++.++..|.|.... ..|+.-... .....-...++.+
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~----~~a~G~~G~v~~s~-D~G~tW~~~-----------------~~~~~~~~~ly~v 376 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKE----AWAAGGSGILLRST-DGGKSWKRD-----------------KGADNIAANLYSV 376 (398)
T ss_pred eecccCCCCcceEEEEEcCCCc----EEEEECCCcEEEeC-CCCcceeEc-----------------cccCCCCcceeEE
Confidence 22221 223588999998864 66677778766653 333321111 0011223457899
Q ss_pred EEcCCCCEEEEecCCCcEEEE
Q 000270 399 AFNANGTVFVTGSSDTLARVW 419 (1749)
Q Consensus 399 afSPDG~~LaSGs~DGtVrIW 419 (1749)
.|.++++.+++| .+|.|.-|
T Consensus 377 ~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 377 KFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred EEcCCCceEEEe-CCcEEEEe
Confidence 998887777766 57776544
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=88.75 E-value=1.1 Score=39.05 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=30.3
Q ss_pred CCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCce
Q 000270 285 EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLP 319 (1749)
Q Consensus 285 s~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~ 319 (1749)
...|.+++|+|...+||.|+.+|.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 5554
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=88.22 E-value=69 Score=38.79 Aligned_cols=217 Identities=14% Similarity=0.200 Sum_probs=118.1
Q ss_pred EEEEEECCCCCEEEEEeCCcEEEEEECC------CC-eEEEEEcc-----CCCCeEEEEEcCCCc------------EEE
Q 000270 246 VYCAIFDRSGRYVITGSDDRLVKIWSME------TA-YCLASCRG-----HEGDITDLAVSSNNA------------LVA 301 (1749)
Q Consensus 246 Vt~VaFSPDG~~LATGS~DGtVrIWDl~------Tg-~~l~tL~g-----Hs~~VtsLafSPDg~------------lLA 301 (1749)
-+.|+|+|.+.+-++....+...+||.. .. .++-++.. ..+..+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4578999999888887788899999986 12 23334432 234677888875332 357
Q ss_pred EEeCCCeEEEEECCCCce-----EEEec-CCCCce-EEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCC
Q 000270 302 SASNDCIIRVWRLPDGLP-----ISVLR-GHTAAV-TAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS 374 (1749)
Q Consensus 302 SGS~DGtIrVWDl~tgk~-----l~tL~-gHs~~V-tsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~ 374 (1749)
.+++||+|.-|.-.-+.. ...+. +..+.| ..+++...+....+.++--..+.|.++|-.-.... ++
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~----~~--- 177 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP----LP--- 177 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc----CC---
Confidence 788999999998532221 12222 222333 45666654333334555567889999985432211 00
Q ss_pred CcccCCCCCCCCCCC---------CCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeee--cCCC
Q 000270 375 DAVAGRNMAPSSSAG---------PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVL--SGHE 443 (1749)
Q Consensus 375 ~~~~g~~~~~~~s~~---------~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l--~gH~ 443 (1749)
+....+..... +..-.|+-..-.+++..=+.|..-|.|-+||+. +..++.+ .+.-
T Consensus 178 ----g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~----------G~l~~r~as~g~L 243 (336)
T TIGR03118 178 ----GSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN----------GQLLRRVASSGRL 243 (336)
T ss_pred ----CCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC----------CcEEEEeccCCcc
Confidence 00000000000 000011111112233233334445788888874 3344433 2233
Q ss_pred CCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecCCCCC
Q 000270 444 NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRS 503 (1749)
Q Consensus 444 ~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~s~k~ 503 (1749)
+.-+.|+..|... -.+++.+|+---.||+|..||..+++.
T Consensus 244 NaPWG~a~APa~F--------------------G~~sg~lLVGNFGDG~InaFD~~sG~~ 283 (336)
T TIGR03118 244 NAPWGLAIAPESF--------------------GSLSGALLVGNFGDGTINAYDPQSGAQ 283 (336)
T ss_pred cCCceeeeChhhh--------------------CCCCCCeEEeecCCceeEEecCCCCce
Confidence 4555666655331 124457888877899999999987663
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=87.74 E-value=68 Score=38.22 Aligned_cols=120 Identities=10% Similarity=0.033 Sum_probs=73.1
Q ss_pred EEEEEcc-CCCCeEEEEEcCCCcEEEEEeCCC--eEEEEECCCCceEEEecC-CCCceEEEEeccCCCcceEEEeecCCC
Q 000270 277 CLASCRG-HEGDITDLAVSSNNALVASASNDC--IIRVWRLPDGLPISVLRG-HTAAVTAIAFSPRPGSVYQLLSSSDDG 352 (1749)
Q Consensus 277 ~l~tL~g-Hs~~VtsLafSPDg~lLASGS~DG--tIrVWDl~tgk~l~tL~g-Hs~~VtsIaFSPdg~~~~~LaSgS~DG 352 (1749)
.+.++.. ...-...+.|..+|.++-+.+.-| .|+.+|+.+|+.+....- ..-.--.|+...+. ...-.-.++
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~----l~qLTWk~~ 110 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDK----LYQLTWKEG 110 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTE----EEEEESSSS
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCE----EEEEEecCC
Confidence 4555442 123355788878898888888766 799999999987755432 22233445555431 445556778
Q ss_pred cEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCC
Q 000270 353 TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACK 423 (1749)
Q Consensus 353 tIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t 423 (1749)
...+||..+.+.+.++..+ +.=+.++ .+|..|+.......|+++|..+
T Consensus 111 ~~f~yd~~tl~~~~~~~y~---------------------~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~ 158 (264)
T PF05096_consen 111 TGFVYDPNTLKKIGTFPYP---------------------GEGWGLT--SDGKRLIMSDGSSRLYFLDPET 158 (264)
T ss_dssp EEEEEETTTTEEEEEEE-S---------------------SS--EEE--ECSSCEEEE-SSSEEEEE-TTT
T ss_pred eEEEEccccceEEEEEecC---------------------CcceEEE--cCCCEEEEECCccceEEECCcc
Confidence 8999999887776666431 1234455 4666677666667788888643
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=87.72 E-value=7.9 Score=51.10 Aligned_cols=118 Identities=11% Similarity=0.112 Sum_probs=79.4
Q ss_pred EEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEc-cCCCCeEEEEEc--CCCcEEEEEeCCCeEEEEE
Q 000270 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVS--SNNALVASASNDCIIRVWR 313 (1749)
Q Consensus 237 ~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~-gHs~~VtsLafS--PDg~lLASGS~DGtIrVWD 313 (1749)
.++........-+.-|.-++..++-+....+.|||...+.+...-. ...+.|.++.|. |+++.+++.|..+.|.++.
T Consensus 23 ~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 23 STFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred EEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 3344344455555566666655555556789999999887554422 457889999997 5899999999999999985
Q ss_pred CC---------CCceEEEe--cCCC-CceEEEEeccCCCcceEEEeecCCCcEEEEEc
Q 000270 314 LP---------DGLPISVL--RGHT-AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359 (1749)
Q Consensus 314 l~---------tgk~l~tL--~gHs-~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl 359 (1749)
-. +..++..+ ..|+ .+|.+..|.++| .|++|+. ..+.|+|-
T Consensus 103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G----~LvV~sG-Nqlfv~dk 155 (631)
T PF12234_consen 103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG----TLVVGSG-NQLFVFDK 155 (631)
T ss_pred ccchhhhcCCcccceeEEEEeecCCCCCccceeEecCC----eEEEEeC-CEEEEECC
Confidence 31 11233332 3444 689999999998 4555554 45788764
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.93 E-value=0.19 Score=65.51 Aligned_cols=153 Identities=14% Similarity=0.149 Sum_probs=87.4
Q ss_pred CCeEEEEECCCCc-eEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcC--CCcccceeecCCCCCcccCCCC
Q 000270 306 DCIIRVWRLPDGL-PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR--YSQFSPRIYIPRPSDAVAGRNM 382 (1749)
Q Consensus 306 DGtIrVWDl~tgk-~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~--tg~~l~~l~~~~~~~~~~g~~~ 382 (1749)
.+-|++-+..+.. .-..+++.++.|..++|..... . .++ -.-|.+.||++. .|+....+.+...
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~-p-k~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~--------- 176 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKC-P-KGR--RLVGELFVYDVDVLQGEIQPQLEVTPI--------- 176 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCC-h-HHH--HHhhhhheeehHhhccccccceEEeec---------
Confidence 4557777655432 1123567778888888865321 1 122 334678899876 3444444332110
Q ss_pred CCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCCccccccc
Q 000270 383 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSL 462 (1749)
Q Consensus 383 ~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~ 462 (1749)
...+.....|..+-|-++..++..+-.++.|++..+... ....+.+|...+..++|-..++.
T Consensus 177 ---~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra----------~~~l~rsHs~~~~d~a~~~~g~~----- 238 (1283)
T KOG1916|consen 177 ---TPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRA----------LRSLFRSHSQRVTDMAFFAEGVL----- 238 (1283)
T ss_pred ---CcCCCCcceeeecccccccceeeeccCCCceeEeeechH----------HHHHHHhcCCCcccHHHHhhchh-----
Confidence 001111123444445556778888888999998887532 22456679888888877655421
Q ss_pred ccCCCCCCCCcccccccCCCEEEEEeCCCcEEEEecC
Q 000270 463 ADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPR 499 (1749)
Q Consensus 463 ~~~~~~~~~~~~~~s~~~~~~LaSgS~DGtIrIWDl~ 499 (1749)
.+...-.++..|+..+.||.++.|.+.
T Consensus 239 ----------~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 239 ----------KLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred ----------hheeeCCCCcEEEEeecCCccceeeee
Confidence 111223345778888888888887543
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=86.72 E-value=14 Score=48.34 Aligned_cols=63 Identities=10% Similarity=0.018 Sum_probs=35.4
Q ss_pred CCCEEEEEeCCc------EEEEEECCCCeEEEE--EccCCCCeEEEEEcCCCcEEEEEeCC-----CeEEEEECCCCc
Q 000270 254 SGRYVITGSDDR------LVKIWSMETAYCLAS--CRGHEGDITDLAVSSNNALVASASND-----CIIRVWRLPDGL 318 (1749)
Q Consensus 254 DG~~LATGS~DG------tVrIWDl~Tg~~l~t--L~gHs~~VtsLafSPDg~lLASGS~D-----GtIrVWDl~tgk 318 (1749)
++.+++.||.++ .+..||..+.+-... +.........++ -++++++.||.+ ..+..||..+.+
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 456667776542 577888877654221 111111122222 367888888865 357778876654
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.25 E-value=48 Score=38.47 Aligned_cols=174 Identities=12% Similarity=0.141 Sum_probs=98.4
Q ss_pred EEEEeCCcEEEEEEC--CCCeEEEEEcc-----CCCCeEEEEEcCCCcEEEEEeCC---------CeEEEEECCCCceEE
Q 000270 258 VITGSDDRLVKIWSM--ETAYCLASCRG-----HEGDITDLAVSSNNALVASASND---------CIIRVWRLPDGLPIS 321 (1749)
Q Consensus 258 LATGS~DGtVrIWDl--~Tg~~l~tL~g-----Hs~~VtsLafSPDg~lLASGS~D---------GtIrVWDl~tgk~l~ 321 (1749)
.+.++.--.|.-||. +.....+++.. ......+-..+|+|++.+-.-.| |.++.|-. +..+.
T Consensus 74 ~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~--~h~v~ 151 (310)
T KOG4499|consen 74 AVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA--GHQVE 151 (310)
T ss_pred EEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEecc--CCCce
Confidence 333333334555773 33344444221 13455666778999985433222 44555543 22233
Q ss_pred EecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEE--cCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEE
Q 000270 322 VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD--ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCA 399 (1749)
Q Consensus 322 tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWD--l~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~La 399 (1749)
.+...-+--++++|..+.+ .+.++-+.+-+|.-|| ..+|.....-.+ ..-+...+.... ..-.++
T Consensus 152 ~i~~~v~IsNgl~Wd~d~K--~fY~iDsln~~V~a~dyd~~tG~~snr~~i------~dlrk~~~~e~~-----~PDGm~ 218 (310)
T KOG4499|consen 152 LIWNCVGISNGLAWDSDAK--KFYYIDSLNYEVDAYDYDCPTGDLSNRKVI------FDLRKSQPFESL-----EPDGMT 218 (310)
T ss_pred eeehhccCCccccccccCc--EEEEEccCceEEeeeecCCCcccccCccee------EEeccCCCcCCC-----CCCcce
Confidence 3333334457889997765 2456667778888888 566654432211 000111111111 122344
Q ss_pred EcCCCCEEEEecCCCcEEEEeCCCCCCCCCCCCCcceeeecCCCCCeEEEEEcCCC
Q 000270 400 FNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCA 455 (1749)
Q Consensus 400 fSPDG~~LaSGs~DGtVrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg 455 (1749)
...+|.++++.-..|+|..+|..+ ++.+..+.-....|++++|-...
T Consensus 219 ID~eG~L~Va~~ng~~V~~~dp~t---------GK~L~eiklPt~qitsccFgGkn 265 (310)
T KOG4499|consen 219 IDTEGNLYVATFNGGTVQKVDPTT---------GKILLEIKLPTPQITSCCFGGKN 265 (310)
T ss_pred EccCCcEEEEEecCcEEEEECCCC---------CcEEEEEEcCCCceEEEEecCCC
Confidence 466888888888899999999976 45666777778999999998653
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.12 E-value=0.97 Score=59.35 Aligned_cols=120 Identities=13% Similarity=0.168 Sum_probs=72.6
Q ss_pred CCEEEEEECC---CCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEEEE-----------EcCCCcEEEEEeCCCeE
Q 000270 244 NAVYCAIFDR---SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLA-----------VSSNNALVASASNDCII 309 (1749)
Q Consensus 244 ~~Vt~VaFSP---DG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLa-----------fSPDg~lLASGS~DGtI 309 (1749)
..+.-|.|.| ..-++..+-.++.|++.++.+... ..+++|..++++++ +||||+.||+++.||.+
T Consensus 181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v 259 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSV 259 (1283)
T ss_pred CCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcc
Confidence 3344444544 567788888889998877765332 45667888877766 48999999999999999
Q ss_pred EEEECC-CC----ceEEEecCCC-CceEEEEeccCCC------cceEEEe-ecCCCcEEEEEcCCCcc
Q 000270 310 RVWRLP-DG----LPISVLRGHT-AAVTAIAFSPRPG------SVYQLLS-SSDDGTCRIWDARYSQF 364 (1749)
Q Consensus 310 rVWDl~-tg----k~l~tL~gHs-~~VtsIaFSPdg~------~~~~LaS-gS~DGtIrIWDl~tg~~ 364 (1749)
+.|-+. +| .|+...+.|+ .+-.|..|+.... ...++++ +.....+++|.-..-+|
T Consensus 260 ~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~C 327 (1283)
T KOG1916|consen 260 GFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQC 327 (1283)
T ss_pred ceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhh
Confidence 988753 22 4445555666 3333333333211 0012233 33345577776554443
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=85.81 E-value=14 Score=46.00 Aligned_cols=94 Identities=17% Similarity=0.170 Sum_probs=54.0
Q ss_pred CEEEEEECCCCCEEEEEe-----------CCc-EEEEEECCC--Ce--EEEEEccCCCCeEEEEEcCCCcEEEEEeCCCe
Q 000270 245 AVYCAIFDRSGRYVITGS-----------DDR-LVKIWSMET--AY--CLASCRGHEGDITDLAVSSNNALVASASNDCI 308 (1749)
Q Consensus 245 ~Vt~VaFSPDG~~LATGS-----------~DG-tVrIWDl~T--g~--~l~tL~gHs~~VtsLafSPDg~lLASGS~DGt 308 (1749)
....|+|+++|+++++-. ..+ .|.+++-.+ |+ ....|...-.....|+|.+++ ++++ +....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCCeE
Confidence 456789999999877642 223 787776543 33 223443334456889999998 5554 34433
Q ss_pred EEEEECCC-----Cce--E-EEecC----CCCceEEEEeccCCC
Q 000270 309 IRVWRLPD-----GLP--I-SVLRG----HTAAVTAIAFSPRPG 340 (1749)
Q Consensus 309 IrVWDl~t-----gk~--l-~tL~g----Hs~~VtsIaFSPdg~ 340 (1749)
+++.+... ++. + ..+.. +......++|.||+.
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~ 136 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW 136 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC
Confidence 33445422 121 1 11222 234577899999985
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=84.66 E-value=16 Score=48.71 Aligned_cols=174 Identities=14% Similarity=0.106 Sum_probs=0.0
Q ss_pred EEEcCCCcEEEEEeCCCeEEEEECCCCce-----------------------EEEecCCCCceEEEEeccCCCcceEEEe
Q 000270 291 LAVSSNNALVASASNDCIIRVWRLPDGLP-----------------------ISVLRGHTAAVTAIAFSPRPGSVYQLLS 347 (1749)
Q Consensus 291 LafSPDg~lLASGS~DGtIrVWDl~tgk~-----------------------l~tL~gHs~~VtsIaFSPdg~~~~~LaS 347 (1749)
.+.+. ..+|+++. .+.|.||++..-.. ..... ....|+.|....-+... .|+.
T Consensus 44 talsq-~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p-~PHtIN~i~v~~lg~~E-VLl~ 119 (717)
T PF08728_consen 44 TALSQ-RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWP-FPHTINFIKVGDLGGEE-VLLL 119 (717)
T ss_pred eEEec-CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCC-CCceeeEEEecccCCee-EEEE
Q ss_pred ecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEc--CCCCEEEEecCCCcEEEEeCCCCC
Q 000270 348 SSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN--ANGTVFVTGSSDTLARVWNACKPN 425 (1749)
Q Consensus 348 gS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafS--PDG~~LaSGs~DGtVrIWDl~t~~ 425 (1749)
+.+||.|.+|.+.+-.....-........ .............-...++.++++ ...++||+++....|.||-+....
T Consensus 120 c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~-~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~ 198 (717)
T PF08728_consen 120 CTDDGDVLAYYTETIIEAIERFSEDNDSG-FSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVD 198 (717)
T ss_pred EecCCeEEEEEHHHHHHHHHhhccccccc-cccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccc
Q ss_pred CCCCCCCCcceeeecCCCCCeEEEEEcCCCcccccccccCCCCCCCCcccccccCCC---EEEEEeCCCcEEEEec
Q 000270 426 TDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHD---NIVTCSRDGSAIIWIP 498 (1749)
Q Consensus 426 ~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~---~LaSgS~DGtIrIWDl 498 (1749)
......+... |...|.+|+|.++. .++. .+++++-.|.+.+|++
T Consensus 199 ~r~~~~~s~~------~~hNIP~VSFl~~~-----------------------~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 199 ERFYHVPSHQ------HSHNIPNVSFLDDD-----------------------LDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccccccc------cccCCCeeEeecCC-----------------------CCCccceEEEEEeccCcEEEEEE
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=84.23 E-value=19 Score=46.48 Aligned_cols=68 Identities=10% Similarity=0.088 Sum_probs=45.6
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEECCCC-c-eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 000270 544 NMIVWSLDNRFVLAAIMDCRICVWNAADG-S-LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1749)
Q Consensus 544 tsVafSPDG~~LATGs~DGtI~VWDl~tg-k-lv~tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl 612 (1749)
..+.|+|....|++-.....-.++++... . ....+ .-.+.|.+.+|.++|.+++++.|..=.-+|||-
T Consensus 116 QGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 116 QGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred CcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 34779999988887776555556666432 2 22334 345669999999977788777766555667764
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=83.78 E-value=7.6 Score=49.02 Aligned_cols=92 Identities=14% Similarity=0.194 Sum_probs=66.8
Q ss_pred cceEEEEccCCCCEEEEEECCCCCEEEEEeCCcEEEEEECCCCeEEEEEccCCCCeEE-EEEc-C--C------------
Q 000270 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITD-LAVS-S--N------------ 296 (1749)
Q Consensus 233 ~~~i~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtVrIWDl~Tg~~l~tL~gHs~~Vts-LafS-P--D------------ 296 (1749)
......|......+.+|+.+|++++.|+...=|.|.|+|+.++..++.++|-...=.. +... . .
T Consensus 297 l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~ 376 (415)
T PF14655_consen 297 LPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSS 376 (415)
T ss_pred cceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCC
Confidence 3455667777788999999999999988877799999999999999888875433111 1110 0 0
Q ss_pred --Cc-EEEEEeCCCeEEEEECCCCceEEEec
Q 000270 297 --NA-LVASASNDCIIRVWRLPDGLPISVLR 324 (1749)
Q Consensus 297 --g~-lLASGS~DGtIrVWDl~tgk~l~tL~ 324 (1749)
.. +++-+-.-|.|.||.+++|..+..+.
T Consensus 377 ~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 377 RFALFLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred cceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 11 34445668999999999998877665
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.75 E-value=5.6 Score=54.07 Aligned_cols=154 Identities=14% Similarity=0.079 Sum_probs=92.9
Q ss_pred EEEccCC-CCEEEEEECCCCCEEEEE--eCCcEEEEEECCCCeEE-----EEEc------cCCCCeEEEEEcCCC-cEEE
Q 000270 237 KRVRGHR-NAVYCAIFDRSGRYVITG--SDDRLVKIWSMETAYCL-----ASCR------GHEGDITDLAVSSNN-ALVA 301 (1749)
Q Consensus 237 ~tL~GH~-~~Vt~VaFSPDG~~LATG--S~DGtVrIWDl~Tg~~l-----~tL~------gHs~~VtsLafSPDg-~lLA 301 (1749)
.+++-|. -.|..+...+|++..++. +.+-.|..||+.+-..- .-|. ....-+.++.|.|.= ...|
T Consensus 93 ~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~a 172 (1405)
T KOG3630|consen 93 LTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSA 172 (1405)
T ss_pred cceeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhh
Confidence 3344443 345556666777665543 33447888998643211 1111 123445678888843 2356
Q ss_pred EEeCCCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCC
Q 000270 302 SASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRN 381 (1749)
Q Consensus 302 SGS~DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~ 381 (1749)
.+..|+.|+|..+........--..+..+++++|+|.|+ +++.|-..|++.-|-..- +....+ +.+.
T Consensus 173 v~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGK---Ql~iG~nnGt~vQy~P~l-eik~~i--p~Pp------- 239 (1405)
T KOG3630|consen 173 VDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGK---QLFIGRNNGTEVQYEPSL-EIKSEI--PEPP------- 239 (1405)
T ss_pred hhccccchhhhhhhhhhhhhcccCcccceeeEEeccccc---eeeEecCCCeEEEeeccc-ceeecc--cCCC-------
Confidence 667788999887654322222123566789999999998 899999999998886432 211121 1111
Q ss_pred CCCCCCCCCCCCceEEEEEcCCCCEEEEe
Q 000270 382 MAPSSSAGPQSHQIFCCAFNANGTVFVTG 410 (1749)
Q Consensus 382 ~~~~~s~~~h~~~Vt~LafSPDG~~LaSG 410 (1749)
......|.||+|-....++++-
T Consensus 240 -------~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 240 -------VEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred -------cCCCcceeEEEEecceeEEEEe
Confidence 1125679999998877777653
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=82.75 E-value=1.3e+02 Score=37.08 Aligned_cols=57 Identities=18% Similarity=0.267 Sum_probs=34.1
Q ss_pred ceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCC
Q 000270 329 AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN 403 (1749)
Q Consensus 329 ~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPD 403 (1749)
..++|+|.|++. |+++...|.|++++ ..+.....+.. .+ .........+..++|+|+
T Consensus 3 ~P~~~a~~pdG~----l~v~e~~G~i~~~~-~~g~~~~~v~~-~~------------~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGR----LLVAERSGRIWVVD-KDGSLKTPVAD-LP------------EVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSC----EEEEETTTEEEEEE-TTTEECEEEEE--T------------TTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCc----EEEEeCCceEEEEe-CCCcCcceecc-cc------------cccccccCCcccceeccc
Confidence 357899999975 45556699999999 44443121110 00 011234556899999994
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.29 E-value=1.3e+02 Score=40.30 Aligned_cols=51 Identities=16% Similarity=0.314 Sum_probs=39.5
Q ss_pred CCeEEEEECCCCceEEEecCCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCC
Q 000270 306 DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY 361 (1749)
Q Consensus 306 DGtIrVWDl~tgk~l~tL~gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~t 361 (1749)
--.|+|+++ +|..+..+.-..+.+..+.|+.+. .|++...+|++.+|++-.
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e----eLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE----ELICVQKDGTVHVYGLLG 113 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCCc----eEEEEeccceEEEeecch
Confidence 346888886 677766655444588899999886 588899999999999853
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=81.89 E-value=34 Score=44.41 Aligned_cols=103 Identities=11% Similarity=-0.040 Sum_probs=51.1
Q ss_pred CCCEEEEEeCCc-----EEEEEECCCCeEEE--EEccCCCCeEEEEEcCCCcEEEEEeCC--CeEEEEECCCCceE--EE
Q 000270 254 SGRYVITGSDDR-----LVKIWSMETAYCLA--SCRGHEGDITDLAVSSNNALVASASND--CIIRVWRLPDGLPI--SV 322 (1749)
Q Consensus 254 DG~~LATGS~DG-----tVrIWDl~Tg~~l~--tL~gHs~~VtsLafSPDg~lLASGS~D--GtIrVWDl~tgk~l--~t 322 (1749)
++.++++||.++ .+..||..++.-.. .+....... +++ .-++.+.|.||.+ ..+..||..+++-. ..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 355667777543 57778887654322 221111111 222 2378888888864 35778886654322 12
Q ss_pred ecCCCCceEEEEeccCCCcceEEEeecCCC---cEEEEEcCCCc
Q 000270 323 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDG---TCRIWDARYSQ 363 (1749)
Q Consensus 323 L~gHs~~VtsIaFSPdg~~~~~LaSgS~DG---tIrIWDl~tg~ 363 (1749)
+....... +++.. ++. ..+.||.++ .+..||..+..
T Consensus 349 l~~~r~~~-~~~~~-~g~---IYviGG~~~~~~~ve~ydp~~~~ 387 (480)
T PHA02790 349 LLKPRCNP-AVASI-NNV---IYVIGGHSETDTTTEYLLPNHDQ 387 (480)
T ss_pred CCCCCccc-EEEEE-CCE---EEEecCcCCCCccEEEEeCCCCE
Confidence 21111111 22222 332 556666543 46677776553
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=81.84 E-value=1.4e+02 Score=36.85 Aligned_cols=67 Identities=7% Similarity=-0.018 Sum_probs=40.5
Q ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEec---CCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 000270 542 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT---GHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1749)
Q Consensus 542 ~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~tL~---gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl 612 (1749)
.+..+++.+++..+++| .+|.|. .....|+.-..+. +-....+.+.|.. ++..+ .+|..|.|..|+-
T Consensus 261 ~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~-~~~~~-~~G~~G~il~~~~ 330 (334)
T PRK13684 261 GYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLD-PEKGF-VLGQRGVLLRYVG 330 (334)
T ss_pred ceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeC-CCceE-EECCCceEEEecC
Confidence 57788999988766554 566554 3444454433332 2223577777765 34444 4677888877763
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=81.81 E-value=19 Score=46.47 Aligned_cols=149 Identities=12% Similarity=0.182 Sum_probs=81.3
Q ss_pred CCEEEEEECCCCCEEE-EEe--CCcEEEEEECCCCeEEEEEccCCCCeEEEEEcCC----CcEEEEEeCCCeEEEEECC-
Q 000270 244 NAVYCAIFDRSGRYVI-TGS--DDRLVKIWSMETAYCLASCRGHEGDITDLAVSSN----NALVASASNDCIIRVWRLP- 315 (1749)
Q Consensus 244 ~~Vt~VaFSPDG~~LA-TGS--~DGtVrIWDl~Tg~~l~tL~gHs~~VtsLafSPD----g~lLASGS~DGtIrVWDl~- 315 (1749)
.+|..++|. ||+.++ |.- .+|.+++=| ...+. .-..|..++|.|- -..|++......|.||-+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viG----qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIG----QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEee----ccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 356778886 565444 331 233333222 12333 3346899999984 3244455567789999874
Q ss_pred ----CCceEEEecCC-----CCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCcccCCCCCCCC
Q 000270 316 ----DGLPISVLRGH-----TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1749)
Q Consensus 316 ----tgk~l~tL~gH-----s~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~g~~~~~~~ 386 (1749)
..+.+..-..+ .---.++.|+|... .|++-.....-.++++......-...
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~---iL~VLT~~dvSV~~sV~~d~srVkaD----------------- 151 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA---ILTVLTARDVSVLPSVHCDSSRVKAD----------------- 151 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCc---eEEEEecCceeEeeeeeeCCceEEEe-----------------
Confidence 22322221111 11124578999865 55554444433455554332211111
Q ss_pred CCCCCCCceEEEEEcCCCCEEEEec-CCCcEEEEeCC
Q 000270 387 SAGPQSHQIFCCAFNANGTVFVTGS-SDTLARVWNAC 422 (1749)
Q Consensus 387 s~~~h~~~Vt~LafSPDG~~LaSGs-~DGtVrIWDl~ 422 (1749)
-...+.|.|.+|.+||+.|+++- ..=.-+|||-.
T Consensus 152 --i~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 152 --IKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred --ccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 12456799999999999877653 23346788863
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=81.14 E-value=2.4e+02 Score=39.02 Aligned_cols=72 Identities=13% Similarity=0.099 Sum_probs=46.4
Q ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEEECCCCceEE--EecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCCC
Q 000270 542 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVH--SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG 615 (1749)
Q Consensus 542 ~VtsVafSPDG~~LATGs~DGtI~VWDl~tgklv~--tL~gH~~~VtsLafSPdd~rlLaSgs~DGtIrVWDl~tG 615 (1749)
....+.|.++-..|++++. ..+.++|+.+..... ........|..+.-+|.+..+++.- ....|...++...
T Consensus 205 ~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~~ 278 (765)
T PF10214_consen 205 NWKRILWVSDSNRLLVCNR-SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKSS 278 (765)
T ss_pred cceeeEecCCCCEEEEEcC-CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccCC
Confidence 4556888888778877764 568899998776533 2223456788888888533322222 2356777787663
|
These proteins are found in fungi. |
| >PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions | Back alignment and domain information |
|---|
Probab=81.11 E-value=1.6 Score=33.47 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=23.3
Q ss_pred hhHHHHHHHHhccCCCchhHHHHHHH
Q 000270 50 REVYFLIMHFLSTGPCHRTYGQFWNE 75 (1749)
Q Consensus 50 ~El~FLI~hFL~~gp~~~ta~~L~~E 75 (1749)
.+|.+||..||...++.+||..|.+|
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~E 26 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKE 26 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhc
Confidence 37899999999999999999999987
|
The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=81.01 E-value=20 Score=47.58 Aligned_cols=125 Identities=13% Similarity=0.181 Sum_probs=70.9
Q ss_pred CCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEec-CCCCceEEEEeccCCCcceEEEeecCCCcEEEEEcCCCcc
Q 000270 286 GDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF 364 (1749)
Q Consensus 286 ~~VtsLafSPDg~lLASGS~DGtIrVWDl~tgk~l~tL~-gHs~~VtsIaFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~ 364 (1749)
..++-+.-|.-++.-++-+....+.|||...+.....-. ...+.|.++.|...+.+. .+++.|....|.++.-.....
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~q-siLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQ-SILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCC-EEEEEEcCcEEEEEEccchhh
Confidence 344555555555554444455689999998876433222 357889999998665443 566667777888875321110
Q ss_pred cceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEcCCCCEEEEecCCCcEEEEeC
Q 000270 365 SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA 421 (1749)
Q Consensus 365 l~~l~~~~~~~~~~g~~~~~~~s~~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl 421 (1749)
... .+... ............+.|.+.+|.++|.+++.+ ++.+.|++-
T Consensus 109 ~~~----~p~w~----~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 109 TNK----GPSWA----PIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred hcC----Ccccc----eeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 000 00000 000000111233678899999999766544 456888765
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=80.40 E-value=36 Score=43.23 Aligned_cols=164 Identities=16% Similarity=0.189 Sum_probs=68.3
Q ss_pred CCEEEEEECCCCCEEEEEeCCcEEEEEEC-------CCCeEEEEE-ccCCCCeEEEEEcCCCcEEEEEeCCCeEEEEECC
Q 000270 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSM-------ETAYCLASC-RGHEGDITDLAVSSNNALVASASNDCIIRVWRLP 315 (1749)
Q Consensus 244 ~~Vt~VaFSPDG~~LATGS~DGtVrIWDl-------~Tg~~l~tL-~gHs~~VtsLafSPDg~lLASGS~DGtIrVWDl~ 315 (1749)
....+..|...|.-+++. |..+.||+. .++.....+ .++...+.++ ++.....|.|+.|+--
T Consensus 27 ~~~~~gi~~e~g~Aw~~~--d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~v--------~lv~p~~G~v~f~~~I 96 (422)
T PF08801_consen 27 SPCSMGIFPEIGRAWIVV--DNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPGV--------GLVKPKTGRVVFWESI 96 (422)
T ss_dssp TS-EEEEE-TTSEEEEEE--TTEEEEEE--SS--GG--EEEEE-----------SE--------EEEE-TT-EEEEES-T
T ss_pred cceEEEEEcccCEEEEEE--CCEEEEEeccCCCCCcCcccccceecCCCCCCCceE--------EEEEcCCCCEEecccc
Confidence 445566676677655554 678999998 444444444 4444444443 4455667888888632
Q ss_pred C-CceEEEec------------CCCCceEEE-EeccCCCcceEEEeecCCCcEEEEEcCCCcccceeecCCCCCccc--C
Q 000270 316 D-GLPISVLR------------GHTAAVTAI-AFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA--G 379 (1749)
Q Consensus 316 t-gk~l~tL~------------gHs~~VtsI-aFSPdg~~~~~LaSgS~DGtIrIWDl~tg~~l~~l~~~~~~~~~~--g 379 (1749)
+ ...+.+.. .....+..+ ...+. .++.+...|.|.+...+....+..+.......... +
T Consensus 97 ~~~l~~~t~~~i~l~gv~~~~l~~~e~~~~~~~~~~~-----~~I~~ts~GRif~~~~~~~~g~~~l~y~~~~~~~~~i~ 171 (422)
T PF08801_consen 97 SHLLVLATPSQISLLGVSYSELLSGELSTSLTNVEPS-----GFIVSTSTGRIFFLGIRDSNGKYELSYQQLSGRCSKIN 171 (422)
T ss_dssp T-TT--EEEE------------------EEEEEEETT-----TEEEEETT--EEEEEE-TTS-EEEEE-TT---------
T ss_pred hhhhhcCccccccccccceeeecCCceEEECCCCceE-----EEEEECCCCeEEEEeCCCCCCcEEEEEEcCcCCccccc
Confidence 2 21111111 011112222 23332 24555666666666665533344443211111000 0
Q ss_pred CCCCCC-CCC----CCCCCceEEEEEcCCCCEEEEecCCCcEEEEeCC
Q 000270 380 RNMAPS-SSA----GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNAC 422 (1749)
Q Consensus 380 ~~~~~~-~s~----~~h~~~Vt~LafSPDG~~LaSGs~DGtVrIWDl~ 422 (1749)
...... ... ......|..++..+..+.|++.+.+|.|.+|++.
T Consensus 172 ~~~~~~~~~~~p~~~~~~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 172 HTSSSIFSSLLPSFSDPRPKIVQVAVDPSRRLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp --------------------EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred cccCceeccccCCcccchhceeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence 000000 010 1123449999999988999999999999999994
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1749 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 2e-12 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-11 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 7e-05 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-11 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 7e-05 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 3e-11 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 1e-04 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 3e-11 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 1e-04 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 3e-11 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 1e-04 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 3e-11 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 1e-04 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 3e-11 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 1e-04 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 3e-11 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 2e-04 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 4e-11 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 2e-04 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 4e-11 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 2e-04 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 4e-11 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 2e-04 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 4e-11 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 2e-04 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 4e-11 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-04 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 4e-11 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 2e-04 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 4e-11 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 2e-04 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 6e-11 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 2e-04 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 6e-11 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 2e-04 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 2e-10 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 6e-10 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 3e-09 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 8e-08 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 4e-04 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 8e-08 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 2e-07 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 5e-05 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 2e-07 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 2e-07 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 3e-07 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 4e-07 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 4e-07 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 4e-07 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 4e-07 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 5e-07 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 2e-04 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 1e-06 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 1e-06 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 2e-06 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 7e-05 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 2e-06 | ||
| 3jrp_A | 379 | Sec13 With Nup145c (Aa109-179) Insertion Blade Leng | 4e-06 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 4e-06 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 5e-06 | ||
| 2pm9_B | 297 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 5e-06 | ||
| 2pm6_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 7e-06 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 9e-06 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 9e-06 | ||
| 4gqb_B | 344 | Crystal Structure Of The Human Prmt5:mep50 Complex | 1e-05 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 1e-05 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 1e-05 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 2e-05 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 2e-05 | ||
| 2pm7_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 2e-05 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 3e-05 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 3e-05 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 3e-05 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 4e-05 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 1e-04 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 4e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297 | Back alignment and structure |
|
| >pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1749 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 9e-32 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-19 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-17 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-14 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-26 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-13 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 6e-08 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-24 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 7e-23 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 9e-21 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-10 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-08 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-23 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-20 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-17 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-14 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 9e-10 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-21 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 7e-16 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-19 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 7e-13 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 8e-13 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 5e-12 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 9e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 5e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-19 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-09 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-08 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 5e-19 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 9e-18 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-18 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 9e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 9e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-17 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 6e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 8e-17 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-15 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-16 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-10 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 6e-09 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-15 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-12 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.002 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-14 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-11 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 6e-14 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 6e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 7e-09 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-12 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-09 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-05 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-10 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-05 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 1e-09 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-09 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 5e-08 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 1e-07 | |
| d1wuma1 | 118 | a.29.2.1 (A:715-832) P300/CAF histone acetyltransf | 3e-06 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 3e-06 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 2e-05 | |
| d3d7ca1 | 102 | a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [T | 4e-05 | |
| d1eqfa1 | 139 | a.29.2.1 (A:1359-1497) TAFII250 double bromodomain | 4e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.001 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 125 bits (313), Expect = 9e-32
Identities = 69/372 (18%), Positives = 130/372 (34%), Gaps = 68/372 (18%)
Query: 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL 299
GHR+ V IF +++ S+D +K+W ET + +GH + D++ + L
Sbjct: 14 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 73
Query: 300 VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
+AS S D I++W I + GH V++++ P ++S+S D T ++W+
Sbjct: 74 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG---DHIVSASRDKTIKMWEV 130
Query: 360 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVW 419
+ + N +GT+ + S+D RVW
Sbjct: 131 QTGYCVKTFT--------------------GHREWVRMVRPNQDGTLIASCSNDQTVRVW 170
Query: 420 NACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWF 479
L H + V + ++ + S S A S+ K S
Sbjct: 171 VV---------ATKECKAELREHRHVVECISWAPESSYSSISEATGSE------TKKSGK 215
Query: 480 CHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 539
+++ SRD + +W + G ++
Sbjct: 216 PGPFLLSGSRDKTIKMWDVST-----------------------------GMCLMTLVGH 246
Query: 540 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAM 599
V +++ +F+L+ D + VW+ + + +L H LD H P +
Sbjct: 247 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV- 305
Query: 600 SAGYDGKTIVWD 611
+ D VW+
Sbjct: 306 TGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 89.4 bits (220), Expect = 2e-19
Identities = 48/313 (15%), Positives = 89/313 (28%), Gaps = 27/313 (8%)
Query: 310 RVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIY 369
+ W +P L GH + VT + F P ++S+S+D T ++WD F
Sbjct: 1 KEW-IPRPPEKYALSGHRSPVTRVIFHP---VFSVMVSASEDATIKVWDYETGDFERT-- 54
Query: 370 IPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDS 429
+ +D+V + S + + S
Sbjct: 55 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR------TMHGHDHNVSSVS 108
Query: 430 DQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR 489
PN + V + + + + F+ P + I +CS
Sbjct: 109 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL-----IASCSN 163
Query: 490 DGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWS 549
D + +W+ + L+ + + G
Sbjct: 164 DQTVRVWVVAT---------KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 214
Query: 550 LDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIV 609
F+L+ D I +W+ + G + +L GH + H I S D V
Sbjct: 215 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL-SCADDKTLRV 273
Query: 610 WDIWEGIPIRIYE 622
WD ++
Sbjct: 274 WDYKNKRCMKTLN 286
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 83.6 bits (205), Expect = 1e-17
Identities = 54/294 (18%), Positives = 102/294 (34%), Gaps = 72/294 (24%)
Query: 220 CYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLA 279
+ Q + I+ + GH + V +G ++++ S D+ +K+W ++T YC+
Sbjct: 78 SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK 137
Query: 280 SCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRP 339
+ GH + + + + L+AS SND +RVW + + LR H V I+++P
Sbjct: 138 TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPES 197
Query: 340 GSVY-----------------QLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 382
LLS S D T ++WD
Sbjct: 198 SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD--------------------VSTG 237
Query: 383 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 442
+ + + F++ G ++ + D RVW+ + + L+ H
Sbjct: 238 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY---------KNKRCMKTLNAH 288
Query: 443 ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 496
E+ V + F + +VT S D + +W
Sbjct: 289 EHFVTSLDFH----------KTAPY----------------VVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 74.8 bits (182), Expect = 1e-14
Identities = 56/338 (16%), Positives = 115/338 (34%), Gaps = 67/338 (19%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT 289
+ + ++GH ++V FD SG+ + + S D +K+W + C+ + GH+ +++
Sbjct: 46 YETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS 105
Query: 290 DLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS 349
+++ N + SAS D I++W + G + GH V + + + S S
Sbjct: 106 SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG---TLIASCS 162
Query: 350 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 409
+D T R+W + + R S S+ ++ G ++
Sbjct: 163 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 222
Query: 410 GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469
GS D ++W+ + L GH+N V V F
Sbjct: 223 GSRDKTIKMWD---------VSTGMCLMTLVGHDNWVRGVLFHS---------------- 257
Query: 470 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR 529
I++C+ D + +W +++R
Sbjct: 258 ----------GGKFILSCADDKTLRVWDYKNKR--------------------------- 280
Query: 530 GGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVW 567
+ + V + + +V+ +D + VW
Sbjct: 281 --CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 109 bits (273), Expect = 4e-26
Identities = 46/375 (12%), Positives = 110/375 (29%), Gaps = 33/375 (8%)
Query: 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL 299
RGH +V YVITG+DD++++++ L GH+G + L + L
Sbjct: 9 RGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL 67
Query: 300 VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
V+ +++ + ++ + ++ S D T +W
Sbjct: 68 VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYI--VTGSRDNTLHVWKL 125
Query: 360 RYSQFSPRIYIPRPSDAVAGRN-MAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV 418
P V P + H + +G + V+GS D V
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185
Query: 419 WNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478
W+ + + + + ++++ + D+T + +
Sbjct: 186 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM--------------DTTIRIWDLE 231
Query: 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 538
+ + AA +
Sbjct: 232 NGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH----------- 280
Query: 539 TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHS-LTGHTESTYVLDVHPFNPRI 597
++ I + +L + + + ++N G LVH+ + + + ++ +
Sbjct: 281 -HTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG--KTL 337
Query: 598 AMSAGYDGKTIVWDI 612
+ DG++ + +
Sbjct: 338 VAAVEKDGQSFLEIL 352
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 72.2 bits (175), Expect = 1e-13
Identities = 40/343 (11%), Positives = 93/343 (27%), Gaps = 33/343 (9%)
Query: 279 ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPR 338
+ RGH + + + V + ++D +IRV+ + + L GH V A+ ++
Sbjct: 6 TTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG 64
Query: 339 PGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCC 398
L+S S D T R+WD + + + +
Sbjct: 65 ----GILVSGSTDRTVRVWDIKKGCCTHVFEGH------------------NSTVRCLDI 102
Query: 399 AFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVAS 458
N VTGS D VW + + + + + + V
Sbjct: 103 VEYKNIKYIVTGSRDNTLHVWKL------PKESSVPDHGEEHDYPLVFHTPEENPYFVGV 156
Query: 459 RFSLADSSKEDSTPKFKNSWFCHDNIVT--CSRDGSAIIWIPRSRRSHPKAARWTQAYHL 516
S + S +DN + + + +
Sbjct: 157 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC 216
Query: 517 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVH 576
+ + + ++ + L + A+
Sbjct: 217 ISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRK 276
Query: 577 SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR 619
HT + + + + + +G + + ++++ G +
Sbjct: 277 FSYHHTNLSAITTFYVSDNILV--SGSENQFNIYNLRSGKLVH 317
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.8 bits (140), Expect = 3e-09
Identities = 7/94 (7%), Positives = 30/94 (31%), Gaps = 5/94 (5%)
Query: 270 WSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI-SVLRGHTA 328
+ H +++ + + + + ++ ++ L G + + +
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD 325
Query: 329 AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 362
+ ++ F + + + DG + +S
Sbjct: 326 QIWSVNFKGK----TLVAAVEKDGQSFLEILDFS 355
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.5 bits (129), Expect = 6e-08
Identities = 15/109 (13%), Positives = 33/109 (30%), Gaps = 3/109 (2%)
Query: 207 FTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRL 266
+ + A + K H N F S +++GS+++
Sbjct: 246 VGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ- 304
Query: 267 VKIWSMETAYCLAS-CRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314
I+++ + + + I + LVA+ D + L
Sbjct: 305 FNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKDGQSFLEIL 352
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 104 bits (260), Expect = 2e-24
Identities = 62/380 (16%), Positives = 117/380 (30%), Gaps = 83/380 (21%)
Query: 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDL 291
+M+ + +RGH +Y + R +++ S D + IW T + + +
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 292 AVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD 351
A + + VA D I ++ L + A T R Q+++SS D
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163
Query: 352 GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS 411
TC +WD Q + + + + + +FV+G+
Sbjct: 164 TTCALWDIETGQQTTTFT--------------------GHTGDVMSLSLAPDTRLFVSGA 203
Query: 412 SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDST 471
D A++W+ + +GHE+D+N + F
Sbjct: 204 CDASAKLWDV---------REGMCRQTFTGHESDINAICFFP------------------ 236
Query: 472 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGG 531
+ T S D + ++ R+ + +
Sbjct: 237 --------NGNAFATGSDDATCRLFDLRADQELMTYSHDNI------------------- 269
Query: 532 PRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH 591
G+ + +S R +LA D VW+A L GH L V
Sbjct: 270 --------ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321
Query: 592 PFNPRIAMSAGYDGKTIVWD 611
+A + +D +W+
Sbjct: 322 DDGMAVA-TGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 99.8 bits (247), Expect = 7e-23
Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 5/131 (3%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKI--WSMETAYCLASCRGHEGD 287
V++ + GH + + F +G TGSDD ++ + S
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG 272
Query: 288 ITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLS 347
IT ++ S + L+ + +D VW VL GH V+ + + + +
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG---MAVAT 329
Query: 348 SSDDGTCRIWD 358
S D +IW+
Sbjct: 330 GSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 93.6 bits (231), Expect = 9e-21
Identities = 42/194 (21%), Positives = 68/194 (35%), Gaps = 25/194 (12%)
Query: 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDI 288
++ Q GH V R ++G+ D K+W + C + GHE DI
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229
Query: 289 TDLAVSSNNALVASASNDCIIRV--WRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLL 346
+ N A+ S+D R+ R L +T+++FS S LL
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK---SGRLLL 286
Query: 347 SSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV 406
+ DD C +WDA + +++ C +G
Sbjct: 287 AGYDDFNCNVWDA--------------------LKADRAGVLAGHDNRVSCLGVTDDGMA 326
Query: 407 FVTGSSDTLARVWN 420
TGS D+ ++WN
Sbjct: 327 VATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 76.3 bits (186), Expect = 4e-15
Identities = 18/90 (20%), Positives = 33/90 (36%)
Query: 223 IAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR 282
+ + F +SGR ++ G DD +W A
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 283 GHEGDITDLAVSSNNALVASASNDCIIRVW 312
GH+ ++ L V+ + VA+ S D +++W
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 62.4 bits (150), Expect = 1e-10
Identities = 28/269 (10%), Positives = 72/269 (26%), Gaps = 30/269 (11%)
Query: 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF 451
+I+ + + + V+ S D +W++ +++ + + V +
Sbjct: 55 LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYT---------TNKVHAIPLRSSWVMTCAY 105
Query: 452 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 511
+ D+ K + + + + + T
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165
Query: 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD 571
A G V + + D R ++ D +W+ +
Sbjct: 166 CALWDIETGQQTTTFTGHTGD----------VMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 572 GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR----------IY 621
G + TGH + P A + D ++D+ + I
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFA-TGSDDATCRLFDLRADQELMTYSHDNIICGIT 274
Query: 622 EISRFRDGASIILSDDVGQLYILNTGQGE 650
+S + G ++ D + + + +
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 54.7 bits (130), Expect = 5e-08
Identities = 40/303 (13%), Positives = 77/303 (25%), Gaps = 45/303 (14%)
Query: 322 VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRN 381
LRGH A + A+ + L+S+S DG IWD+ + I +
Sbjct: 50 TLRGHLAKIYAMHWGTDSR---LLVSASQDGKLIIWDSYTTNKVHAIPL----------- 95
Query: 382 MAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG 441
+S + CA+ +G G D + ++N +
Sbjct: 96 ---------RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL 146
Query: 442 HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSR 501
S D+T + G +
Sbjct: 147 SCCRFLDDNQIVT-----------SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 502 RSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD 561
+ + L G RQ +N I + + D
Sbjct: 196 TRLFVSGACDASAKL--------WDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247
Query: 562 CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP--RIAMSAGYDGKTIVWDIWEGIPIR 619
+++ + + + + V F+ R+ ++ D VWD +
Sbjct: 248 ATCRLFDLRADQELMTYSHDNIICGITSVS-FSKSGRLLLAGYDDFNCNVWDALKADRAG 306
Query: 620 IYE 622
+
Sbjct: 307 VLA 309
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 102 bits (255), Expect = 1e-23
Identities = 59/398 (14%), Positives = 113/398 (28%), Gaps = 58/398 (14%)
Query: 221 YAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS 280
Y + P+ + + + H + V C F G Y+ TG + +++ + +A
Sbjct: 40 YILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKT-TQVYRVSDGSLVAR 98
Query: 281 CRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPG 340
D + N + +S+ I V PDG ++ + +
Sbjct: 99 LSDDSAANKD--PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV 156
Query: 341 SVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 400
+ Q R D G+ S +
Sbjct: 157 MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS---IEDGVTTVAVS 213
Query: 401 NANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 460
+G GS D RVW++ + +E +GH++ V V F+
Sbjct: 214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES--GTGHKDSVYSVVFTRD------ 265
Query: 461 SLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPP 520
++V+ S D S +W ++
Sbjct: 266 --------------------GQSVVSGSLDRSVKLWNLQNAN-----------------N 288
Query: 521 PPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTG 580
P G + V + + ++ ++L+ D + W+ G+ + L G
Sbjct: 289 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG 348
Query: 581 HTESTYVLDV------HPFNPRIAMSAGYDGKTIVWDI 612
H S + V P A + D K +W
Sbjct: 349 HRNSVISVAVANGSSLGPEYNVFA-TGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 92.9 bits (229), Expect = 3e-20
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 15/139 (10%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA------------YCLASCRGH 284
+ GH+++VY +F R G+ V++GS DR VK+W+++ A C + GH
Sbjct: 248 ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH 307
Query: 285 EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPG---S 341
+ + +A + N+ + S S D + W G P+ +L+GH +V ++A +
Sbjct: 308 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE 367
Query: 342 VYQLLSSSDDGTCRIWDAR 360
+ S D RIW +
Sbjct: 368 YNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 83.3 bits (204), Expect = 4e-17
Identities = 50/286 (17%), Positives = 93/286 (32%), Gaps = 47/286 (16%)
Query: 218 AACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC 277
++ + + ++GH +Y + SG +++GS DR V+IW + T C
Sbjct: 138 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC 197
Query: 278 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG-------LPISVLRGHTAAV 330
+ +G T + +A+ S D +RVW G GH +V
Sbjct: 198 SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV 257
Query: 331 TAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGP 390
++ F+ ++S S D + ++W+ + + P
Sbjct: 258 YSVVFTRDG---QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG-------- 306
Query: 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQ 450
+ A N ++GS D W+ + + + +L GH N V V
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDK---------KSGNPLLMLQGHRNSVISVA 357
Query: 451 FSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 496
+ + ++ T S D A IW
Sbjct: 358 VANGSSLGP--------------------EYNVFATGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 75.2 bits (183), Expect = 2e-14
Identities = 51/336 (15%), Positives = 103/336 (30%), Gaps = 30/336 (8%)
Query: 298 ALVASASNDCIIRVWRLPDGLPISVLR--GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355
AL ++ I+ LP + + + + HT+ V + FS + L++ + T +
Sbjct: 31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDG----EYLATGCNKTTQ 86
Query: 356 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTL 415
++ R+ S A +SS+ I F+ +G TG+ D L
Sbjct: 87 VYRVSDGSLVARLS--DDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRL 144
Query: 416 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475
R+W+ Q + + + + + R + + T +
Sbjct: 145 IRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE 204
Query: 476 NSWFCH-------DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPP 528
+ I S D + +W + +
Sbjct: 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER------------LDSENESGTG 252
Query: 529 RGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVL 588
++ T G +++ SLD L + + + S +T +VL
Sbjct: 253 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 312
Query: 589 DV--HPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE 622
V + I S D + WD G P+ + +
Sbjct: 313 SVATTQNDEYIL-SGSKDRGVLFWDKKSGNPLLMLQ 347
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.2 bits (144), Expect = 9e-10
Identities = 40/315 (12%), Positives = 83/315 (26%), Gaps = 37/315 (11%)
Query: 318 LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAV 377
+P + H+ + SV L + +++ +PR D
Sbjct: 4 VPYNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPA---------LPREIDVE 54
Query: 378 AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA---------CKPNTDD 428
+++ +S + C F+ +G TG + T +V+ + +
Sbjct: 55 LHKSLDHTSV-------VCCVKFSNDGEYLATGCNKTT-QVYRVSDGSLVARLSDDSAAN 106
Query: 429 SDQPNHEIDVLSGHENDVNYVQFS--GCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVT 486
D N + + V FS G +A+ +++ + I+
Sbjct: 107 KDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT------GAEDRLIRIWDIENRKIVMILQ 160
Query: 487 CSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMI 546
+ S + + + +P I
Sbjct: 161 GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYI 220
Query: 547 VWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGK 606
+R V + D S S TGH +S Y + + S D
Sbjct: 221 AAGSLDRAV--RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV-SGSLDRS 277
Query: 607 TIVWDIWEGIPIRIY 621
+W++
Sbjct: 278 VKLWNLQNANNKSDS 292
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 96.1 bits (237), Expect = 3e-21
Identities = 39/403 (9%), Positives = 97/403 (24%), Gaps = 83/403 (20%)
Query: 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR------GHEGDITDLAV 293
+ H ++ + ++ S D +K+W + H+ + + V
Sbjct: 11 KAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68
Query: 294 -------SSNNALVASASNDCIIRVWRLPDGLPISVLRGHT----------AAVTAIAFS 336
+ LVA+ S + +R+ + + A+ +
Sbjct: 69 LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 128
Query: 337 PRPGSVYQ--LLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394
+ L+++ GT IW S + + S S
Sbjct: 129 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT--PSQF 186
Query: 395 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454
+ G + TG ++ ++ + + H + S V +
Sbjct: 187 ATSVDISERGLI-ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF------ 239
Query: 455 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 514
+ S + +
Sbjct: 240 -----------------------SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT 276
Query: 515 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSL 574
H V + ++ + +A D ++ W+
Sbjct: 277 H-------------SSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER 323
Query: 575 VHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI----VWDIW 613
+ +L H + + +A+ G ++ V+D+
Sbjct: 324 ITTLNMHCDD-----IEIEEDILAVDE--HGDSLAEPGVFDVK 359
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 79.5 bits (194), Expect = 7e-16
Identities = 28/336 (8%), Positives = 77/336 (22%), Gaps = 47/336 (13%)
Query: 320 ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAG 379
+ + H A + +++ +S S DG ++WD +
Sbjct: 7 ANAGKAHDADIFSVSACNS-----FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61
Query: 380 RNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVL 439
+ T S + + ++D+L
Sbjct: 62 GLHHVDVLQA-------IERDAFELCLVATTSFSGDLLFYR-ITREDETKKVIFEKLDLL 113
Query: 440 S--GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWI 497
++ +++ ++ T D + + + S + +
Sbjct: 114 DSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL 173
Query: 498 PRSRRSHPKAARWTQA---------------YHLKVPPPPMPPQPPRGGPRQRILPTPRG 542
+ S +++ + +++ + ++
Sbjct: 174 QGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS 233
Query: 543 VNMIVWSLDNRFVLAAIMDCRICVWNAAD----------------GSLVHSLTGHTESTY 586
+ + +S + A + H+
Sbjct: 234 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 293
Query: 587 VLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE 622
L + + AG+DGK WD+ I
Sbjct: 294 SLSFNDSGETLCS-AGWDGKLRFWDVKTKERITTLN 328
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.8 bits (122), Expect = 4e-07
Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 7/121 (5%)
Query: 220 CYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLA 279
I S Q H + V F+ SG + + D ++ W ++T +
Sbjct: 266 GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERIT 325
Query: 280 SCRGHEGDI----TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAF 335
+ H DI LAV + +A + V L G + ++ +
Sbjct: 326 TLNMHCDDIEIEEDILAVDEHGDSLAEPG---VFDVKFLKKGWRSGMGADLNESLCCVCL 382
Query: 336 S 336
Sbjct: 383 D 383
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.6 bits (106), Expect = 4e-05
Identities = 15/146 (10%), Positives = 38/146 (26%), Gaps = 16/146 (10%)
Query: 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSM---------------- 272
+ ++ + + N++ F G + D ++
Sbjct: 217 PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT 276
Query: 273 ETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTA 332
++ H + L+ + + + SA D +R W + I+ L H +
Sbjct: 277 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEI 336
Query: 333 IAFSPRPGSVYQLLSSSDDGTCRIWD 358
L+ +
Sbjct: 337 EEDILAVDEHGDSLAEPGVFDVKFLK 362
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.9 bits (221), Expect = 1e-19
Identities = 39/343 (11%), Positives = 94/343 (27%), Gaps = 43/343 (12%)
Query: 291 LAVSSNNALVA-SASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS 349
V+++ + D +I I+ L H V A+ S + + +
Sbjct: 15 FHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNP----TRHVYTG 69
Query: 350 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 409
G ++WD + + + + + I C +G +
Sbjct: 70 GKGCVKVWDISHPGNKSPVSQLDCLN---------------RDNYIRSCKLLPDGCTLIV 114
Query: 410 GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469
G + +W+ P + + C ++ D +
Sbjct: 115 GGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT 174
Query: 470 STPKFKNSW---------FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPP 520
+F+ + T D + W R R + +Q + L P
Sbjct: 175 LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCP 234
Query: 521 P-----------PMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 569
+ + ++ V + ++ ++ ++ D + W
Sbjct: 235 TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 294
Query: 570 ADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612
G+ + + S D+ + I + D K V+++
Sbjct: 295 PYGASIFQS-KESSSVLSCDISVDDKYIV-TGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.8 bits (169), Expect = 7e-13
Identities = 22/182 (12%), Positives = 51/182 (28%), Gaps = 5/182 (2%)
Query: 180 HPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRV 239
W VR G + + + +
Sbjct: 161 SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ 220
Query: 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL 299
+ ++ + +G ++ G + V++ + HE + L +
Sbjct: 221 HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKW 279
Query: 300 VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
S D ++ WR P G I +++V + S +++ S D +++
Sbjct: 280 FVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDK---YIVTGSGDKKATVYEV 335
Query: 360 RY 361
Y
Sbjct: 336 IY 337
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.5 bits (168), Expect = 8e-13
Identities = 18/147 (12%), Positives = 42/147 (28%), Gaps = 11/147 (7%)
Query: 168 SYDRDKGQNEIDHPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPS 227
+ D D H + Q+ LG G + ++
Sbjct: 200 TGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV------ 253
Query: 228 TMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD 287
+ ++ H + V F G++ ++ D L+ W +
Sbjct: 254 ----NKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSS 308
Query: 288 ITDLAVSSNNALVASASNDCIIRVWRL 314
+ +S ++ + + S D V+ +
Sbjct: 309 VLSCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.1 bits (162), Expect = 5e-12
Identities = 38/338 (11%), Positives = 73/338 (21%), Gaps = 62/338 (18%)
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLA-----SCRGHEGDITDLAVSS 295
H V R+V TG VK+W + + C + I +
Sbjct: 49 NHGEVVCAVTISNPTRHVYTGGKGC-VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107
Query: 296 NNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355
+ + + +W + + L+SS
Sbjct: 108 DGCTLIVGGEASTLSIWD---------------------LAAPTPRIKAELTSSAPACYA 146
Query: 356 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTL 415
+ + S+ N + C + +GT TG D
Sbjct: 147 LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT 206
Query: 416 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475
R W+ + +I L + + K
Sbjct: 207 VRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHES 266
Query: 476 NSW---FCHDN--IVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRG 530
F + V+ +D W
Sbjct: 267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPY------------------------------ 296
Query: 531 GPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWN 568
G V S+D+++++ D + V+
Sbjct: 297 GASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (125), Expect = 2e-07
Identities = 30/241 (12%), Positives = 58/241 (24%), Gaps = 26/241 (10%)
Query: 180 HPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRV 239
+ + + C + +++
Sbjct: 120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF 179
Query: 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL 299
+GH + C G + TG D V+ W + I L
Sbjct: 180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ-LQQHDFTSQIFSLGYCPTGEW 238
Query: 300 VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
+A + V + + H + V ++ F+ +S+ D W
Sbjct: 239 LAVGMESSNVEVLHVNKPDKYQL-HLHESCVLSLKFAY---CGKWFVSTGKDNLLNAWRT 294
Query: 360 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVW 419
Y + +S + C + + VTGS D A V+
Sbjct: 295 PYGASIFQS---------------------KESSSVLSCDISVDDKYIVTGSGDKKATVY 333
Query: 420 N 420
Sbjct: 334 E 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (111), Expect = 9e-06
Identities = 36/276 (13%), Positives = 58/276 (21%), Gaps = 55/276 (19%)
Query: 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL 299
N + G +I G + + IW + A++ +
Sbjct: 94 LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS 153
Query: 300 VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD--------- 350
S + V + A D
Sbjct: 154 KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213
Query: 351 --------DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ--IFCCAF 400
D T +I+ Y + + S V ++ H+ + F
Sbjct: 214 EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKF 273
Query: 401 NANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 460
G FV+ D L W P S + V S
Sbjct: 274 AYCGKWFVSTGKDNLLNAWRT----------PYGASIFQSKESSSVLSCDIS-------- 315
Query: 461 SLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 496
D IVT S D A ++
Sbjct: 316 --VDDKY----------------IVTGSGDKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (105), Expect = 5e-05
Identities = 24/259 (9%), Positives = 50/259 (19%), Gaps = 39/259 (15%)
Query: 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF 451
+ + TG + +VW+ + + P ++D +N + +
Sbjct: 51 GEVVCAVTISNPTRHVYTGGKGCV-KVWDI---SHPGNKSPVSQLD-CLNRDNYIRSCKL 105
Query: 452 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 511
+ + S +T S + I +
Sbjct: 106 LPD--GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG 163
Query: 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD 571
+ + Q + + + V + + +
Sbjct: 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF 223
Query: 572 GSLVHSLT-------------------------------GHTESTYVLDVHPFNPRIAMS 600
S + SL H L S
Sbjct: 224 TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFV-S 282
Query: 601 AGYDGKTIVWDIWEGIPIR 619
G D W G I
Sbjct: 283 TGKDNLLNAWRTPYGASIF 301
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 88.4 bits (217), Expect = 3e-19
Identities = 42/333 (12%), Positives = 85/333 (25%), Gaps = 31/333 (9%)
Query: 286 GDITDLAVSSNNALVASASNDC-IIRVWRLPDG--LPISVLRGH-TAAVTAIAFSPRPGS 341
T L+ +A +R D P+ GH ++ VT + FSP GS
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 342 VYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN 401
Y L S + G +W + + S + + S + I +++
Sbjct: 78 QY-LCSGDESGKVIVWGWTFDKESNSVE------------VNVKSEFQVLAGPISDISWD 124
Query: 402 ANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFS 461
G + + + + ++ + S
Sbjct: 125 FEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSV 184
Query: 462 LADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPP 521
+ + + V + S K + + +
Sbjct: 185 VFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI 244
Query: 522 PMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH 581
+P +G + LD++ D I VW+ V T
Sbjct: 245 EDDQEPVQG------------GIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD 292
Query: 582 TESTYV--LDVHPFNPRIAMSAGYDGKTIVWDI 612
+ + V +S DG +++
Sbjct: 293 KQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.2 bits (141), Expect = 2e-09
Identities = 18/151 (11%), Positives = 45/151 (29%), Gaps = 3/151 (1%)
Query: 167 LSYDRDKGQNEIDHPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKP 226
D G P +G +R++ ++ +
Sbjct: 175 SMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD 234
Query: 227 STMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEG 286
+ ++ I+ + A+ + T D +++W + T+ C+ +
Sbjct: 235 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 294
Query: 287 DITDLAVS---SNNALVASASNDCIIRVWRL 314
+ + V + N + S S D + + L
Sbjct: 295 QLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.3 bits (131), Expect = 3e-08
Identities = 17/179 (9%), Positives = 42/179 (23%), Gaps = 4/179 (2%)
Query: 184 HMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHR 243
+ + +R R+ ++ + + + +
Sbjct: 146 WDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQG 205
Query: 244 NAVYCA----IFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL 299
+ V V + S E + + ++
Sbjct: 206 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK 265
Query: 300 VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358
A+ D IRVW + + + +++S S DGT ++
Sbjct: 266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.2 bits (123), Expect = 2e-07
Identities = 30/326 (9%), Positives = 74/326 (22%), Gaps = 29/326 (8%)
Query: 321 SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 380
S R T +++ P ++ R D S+ P +
Sbjct: 14 STQRNF---TTHLSYDPTTNAI--AYPCGKSAFVRCLDDGDSKVPPVVQF---------- 58
Query: 381 NMAPSSSAGPQSHQIFCCAF--NANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDV 438
G S + F +G VW + + + +
Sbjct: 59 -------TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG-WTFDKESNSVEVNVKSE 110
Query: 439 LSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIP 498
++ + + R D+ F + + I
Sbjct: 111 FQVLAGPISDISWDFE---GRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS-QRINACH 166
Query: 499 RSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA 558
+ ++ + P + R V S + + +
Sbjct: 167 LKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS 226
Query: 559 IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618
+ + + + + + + G D VWD+ +
Sbjct: 227 DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV 286
Query: 619 RIYEISRFRDGASIILSDDVGQLYIL 644
+ + + + + G + G I+
Sbjct: 287 QKWTLDKQQLGNQQVGVVATGNGRII 312
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 1e-05
Identities = 30/306 (9%), Positives = 71/306 (23%), Gaps = 72/306 (23%)
Query: 231 QKMQNIKRVRGHR-NAVYCAIF--DRSGRYVITGSDDRLVKIWSMET--------AYCLA 279
K+ + + GH + V F + +Y+ +G + V +W +
Sbjct: 50 SKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKS 109
Query: 280 SCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRP 339
+ G I+D++ + + S+ + A +
Sbjct: 110 EFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQ 169
Query: 340 GSVYQLLSSSDDGTCRIWDA-----------------------------RYSQFSPRIYI 370
+ ++ DDG+ + +
Sbjct: 170 SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK 229
Query: 371 PRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD 430
D +G + + F T +D RVW+
Sbjct: 230 ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV--------- 280
Query: 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD 490
+ + + + + Q + I++ S D
Sbjct: 281 TTSKCVQKWTLDKQQLGNQQVGV-----------------------VATGNGRIISLSLD 317
Query: 491 GSAIIW 496
G+ +
Sbjct: 318 GTLNFY 323
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.3 bits (217), Expect = 5e-19
Identities = 42/368 (11%), Positives = 88/368 (23%), Gaps = 60/368 (16%)
Query: 270 WSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAA 329
W +GH+ + + + S S+D ++VW G + L GHT
Sbjct: 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59
Query: 330 VTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389
V + + + + V ++
Sbjct: 60 VWSSQMRDNIIISGS-------TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVS 112
Query: 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYV 449
G A S + + V +
Sbjct: 113 GSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHT 172
Query: 450 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR 509
+ T + + F ++V+ S D S +W
Sbjct: 173 L-----------------QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE---------- 205
Query: 510 WTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL--DNRFVLAAIMDCRICVW 567
+ T G + + + +++ D + +W
Sbjct: 206 -----------------------TGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIW 242
Query: 568 NAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR 627
+ G + +L G + + FN +++ DG +WD+ G IR
Sbjct: 243 DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG 302
Query: 628 DGASIILS 635
++
Sbjct: 303 GSGGVVWR 310
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.5 bits (207), Expect = 9e-18
Identities = 70/429 (16%), Positives = 131/429 (30%), Gaps = 141/429 (32%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT 289
++++ K ++GH + V G +++GSDD +K+WS T CL + GH G +
Sbjct: 3 RGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW 61
Query: 290 DLAVSSN--------------------------------------NALVASASNDCIIRV 311
+ N V S S D +RV
Sbjct: 62 SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRV 121
Query: 312 WRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIP 371
W + G + VL GH AAV + + R +++S + D ++WD +
Sbjct: 122 WDIETGQCLHVLMGHVAAVRCVQYDGR-----RVVSGAYDFMVKVWDPETETCLHTL--- 173
Query: 372 RPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQ 431
Q H + +G V+GS DT RVW+ +
Sbjct: 174 -------------------QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDV---------E 205
Query: 432 PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG 491
+ I L+GH++ + ++ + +V+ + D
Sbjct: 206 TGNCIHTLTGHQSLTSGMELKD----------------------------NILVSGNADS 237
Query: 492 SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD 551
+ IW ++ + + + +
Sbjct: 238 TVKIWDIKTGQCLQTLQGPNKHQS----------------------------AVTCLQFN 269
Query: 552 NRFVLAAIMDCRICVWNAADGSLVHSLT-----GHTESTYVLDVHPFNPRIAMSAGYDG- 605
FV+ + D + +W+ G + +L G + + A +G
Sbjct: 270 KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCA-VGSRNGT 328
Query: 606 ---KTIVWD 611
K +V D
Sbjct: 329 EETKLLVLD 337
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 85.3 bits (209), Expect = 4e-18
Identities = 34/328 (10%), Positives = 67/328 (20%), Gaps = 36/328 (10%)
Query: 286 GDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQL 345
G L + + + + + + H+ T SP S Y
Sbjct: 18 GTAVVLGNTPAGDKIQYCNGTSVY-TVPVGSLTDTEIYTEHSHQTTVAKTSP---SGYYC 73
Query: 346 LSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT 405
S G RIWD + + IP P S A
Sbjct: 74 ASGDVHGNVRIWDTTQTTHILKTTIPV--------FSGPVKDISWDSESKRIAAVGEGRE 125
Query: 406 VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 465
F + + + + + + +
Sbjct: 126 RFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF 185
Query: 466 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPP 525
+ + DG+ +++ +
Sbjct: 186 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT 245
Query: 526 QPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTEST 585
P D + +A D I +WN A + ++ T
Sbjct: 246 WSP----------------------DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIE 283
Query: 586 -YVLDVHPFNPRIAMSAGYDGKTIVWDI 612
L + + S +G +
Sbjct: 284 DQQLGIIWTKQALV-SISANGFINFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 55.7 bits (132), Expect = 2e-08
Identities = 17/134 (12%), Positives = 35/134 (26%), Gaps = 1/134 (0%)
Query: 180 HPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRV 239
P +R G Y + + +
Sbjct: 175 EGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN 234
Query: 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEG-DITDLAVSSNNA 298
H +V+ + G + + S D+ +KIW++ T + + L +
Sbjct: 235 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ 294
Query: 299 LVASASNDCIIRVW 312
+ S S + I
Sbjct: 295 ALVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 54.5 bits (129), Expect = 4e-08
Identities = 24/262 (9%), Positives = 55/262 (20%), Gaps = 9/262 (3%)
Query: 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVAS 302
R +G + + V + + H T S + AS
Sbjct: 17 RGTAVVLGNTPAGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCAS 75
Query: 303 ASNDCIIRVWRLPDG--LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
+R+W + + + + V I++ + + +
Sbjct: 76 GDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT 135
Query: 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ R ++V + P T T
Sbjct: 136 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSV 195
Query: 421 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFC 480
P+ + ++ + D +
Sbjct: 196 RYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV------AHSGSVFGLTWSPD 249
Query: 481 HDNIVTCSRDGSAIIWIPRSRR 502
I + S D + IW + +
Sbjct: 250 GTKIASASADKTIKIWNVATLK 271
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 51.4 bits (121), Expect = 4e-07
Identities = 23/180 (12%), Positives = 47/180 (26%), Gaps = 4/180 (2%)
Query: 180 HPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRV 239
+ + F + A + ++ K V
Sbjct: 133 FDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFV 192
Query: 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL 299
R ++F +G + + + H G + L S +
Sbjct: 193 HSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 252
Query: 300 VASASNDCIIRVWRLPDGLPISVLRGHT-AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358
+ASAS D I++W + + T + + L+S S +G +
Sbjct: 253 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA---LVSISANGFINFVN 309
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.7 bits (114), Expect = 3e-06
Identities = 41/298 (13%), Positives = 81/298 (27%), Gaps = 65/298 (21%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIW--SMETAYCLASCRGHEGD 287
V + + + H + A SG Y +G V+IW + T + G
Sbjct: 45 VGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGP 104
Query: 288 ITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLS 347
+ D++ S + +A+ S A + +P ++++S
Sbjct: 105 VKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIIS 164
Query: 348 SSDDGTCRIW-----------------------------DARYSQFSPRIYIPRPSDAVA 378
SDD T I+ A +
Sbjct: 165 GSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT 224
Query: 379 GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDV 438
G S S +F ++ +GT + S+D ++WN + + I V
Sbjct: 225 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV------ATLKVEKTIPV 278
Query: 439 LSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 496
+ E+ + ++ +V+ S +G
Sbjct: 279 GTRIEDQQLGIIWTK----------------------------QALVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.1 bits (102), Expect = 9e-05
Identities = 32/303 (10%), Positives = 64/303 (21%), Gaps = 38/303 (12%)
Query: 321 SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 380
RG + +P + + +
Sbjct: 14 RTARGT---AVVLGNTPAG----DKIQYCNGTSVYTVPVG-------------------- 46
Query: 381 NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS 440
++ + SHQ + +G +G R+W+ + +
Sbjct: 47 SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTT-------QTTHILKTTIP 99
Query: 441 GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 500
V + + + + F + S R
Sbjct: 100 VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRP 159
Query: 501 RRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM 560
R + T A P + P G D V +
Sbjct: 160 FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIV---LY 216
Query: 561 DCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRI 620
+ H+ S + L P +IA SA D +W++ +
Sbjct: 217 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA-SASADKTIKIWNVATLKVEKT 275
Query: 621 YEI 623
+
Sbjct: 276 IPV 278
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.1 bits (102), Expect = 9e-05
Identities = 15/91 (16%), Positives = 25/91 (27%), Gaps = 3/91 (3%)
Query: 539 TPRGVNMIV-WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRI 597
T RG +++ + + + + T H+ T V P
Sbjct: 15 TARGTAVVLGNTPAGD-KIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYC 73
Query: 598 AMSAGYDGKTIVWDIWEGIPIRIYEISRFRD 628
S G +WD + I I F
Sbjct: 74 -ASGDVHGNVRIWDTTQTTHILKTTIPVFSG 103
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 82.2 bits (201), Expect = 5e-17
Identities = 38/348 (10%), Positives = 85/348 (24%), Gaps = 27/348 (7%)
Query: 283 GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR---GHTAAVTAIAFSPRP 339
+ I+D+ + + +L+ S D + V++ L + + F
Sbjct: 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68
Query: 340 GSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCA 399
+ + S + ++ R +
Sbjct: 69 D---LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIE 125
Query: 400 FNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 459
+ N N + N ++ + + V + + C +
Sbjct: 126 VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNG 185
Query: 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVP 519
+S + + S DG + + +++ ++
Sbjct: 186 TI-EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN 244
Query: 520 PPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT 579
P N I +S ++F+ A D I WN + +
Sbjct: 245 LKDTNLAYPV--------------NSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA 290
Query: 580 GHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW----EGIPIRIYEI 623
E + V+ + + I A D E IY I
Sbjct: 291 KFNEDS-VVKIAC-SDNILCLATSDDTFKTNAAIDQTIELNASSIYII 336
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.9 bits (130), Expect = 4e-08
Identities = 19/147 (12%), Positives = 36/147 (24%), Gaps = 22/147 (14%)
Query: 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA---------------YCLASCRGHEG 286
A+ + S D V + +
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252
Query: 287 DITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLL 346
+ + S + + +A +D II W L I + + + L
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDN---ILC 308
Query: 347 SSSDDGTCRIWDARYSQF---SPRIYI 370
++ D T + A + IYI
Sbjct: 309 LATSDDTFKTNAAIDQTIELNASSIYI 335
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.0 bits (120), Expect = 6e-07
Identities = 11/111 (9%), Positives = 41/111 (36%), Gaps = 5/111 (4%)
Query: 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDI 288
+ + + V F +++ T D ++ W+++T + + +
Sbjct: 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NED 295
Query: 289 TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRP 339
+ + ++ ++ ++ A++D + D + + +++ I P
Sbjct: 296 SVVKIACSDNILCLATSDDTFKTNAAID----QTIELNASSIYIIFDYENP 342
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 82.2 bits (201), Expect = 8e-17
Identities = 40/390 (10%), Positives = 88/390 (22%), Gaps = 56/390 (14%)
Query: 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET--AYCLASCRGHEGDITDLAVSSNNAL 299
+ C +++ + ++ V I+ + + H G +T + + ++
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65
Query: 300 VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
+ + D VW L L A P S I
Sbjct: 66 IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKF-AVGSGSRVISICYF 124
Query: 360 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFV--TGSSDTLAR 417
+ + S + + A + + + + R
Sbjct: 125 EQENDWWVCKHIKK------PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEER 178
Query: 418 VWNACKPNTDDSDQPNHEIDVLSGHENDVN-------YVQFSGCAVASRFSLADSSKEDS 470
+ + E G + V S + +
Sbjct: 179 PAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT 238
Query: 471 TPKFKNSWFCH-----DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPP 525
++V D +++ S + + L V
Sbjct: 239 LASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAG-----KLSFGGRLDV------- 286
Query: 526 QPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTEST 585
P+ + + RF +D + +A + H S
Sbjct: 287 --------------PKQSSQRGLTARERFQN---LDKKASSEGSAAAG-AGLDSLHKNSV 328
Query: 586 YVLDVHP---FNPRIAMSAGYDGKTIVWDI 612
+ V + G DG +WD+
Sbjct: 329 SQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 77.6 bits (189), Expect = 2e-15
Identities = 37/330 (11%), Positives = 88/330 (26%), Gaps = 67/330 (20%)
Query: 288 ITDLAVSSNNALVASASNDCIIRVWRLPDG--LPISVLRGHTAAVTAIAFSPRPGSVYQL 345
I+ A + + +A N+ + ++ + + L+ H VT + ++P ++
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN---RI 66
Query: 346 LSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT 405
++ D +W + + P + I R + A AP+
Sbjct: 67 VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI------- 119
Query: 406 VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 465
+ + N + + + V + +
Sbjct: 120 -----------SICYFEQENDWWVCKHIKKP-----IRSTVLSLDW-------------- 149
Query: 466 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPP 525
+ S D I+ + + A +
Sbjct: 150 ------------HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES 197
Query: 526 QPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTEST 585
G V+ + +S + V D +C+ +A V +L T
Sbjct: 198 SSSCGW-----------VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPL 246
Query: 586 YVLDVHPFNPRIAMSAGYDGKTIVWDIWEG 615
+ + +A AG+D +++
Sbjct: 247 LAVTFITESSLVA--AGHDCFPVLFTYDSA 274
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 69.1 bits (167), Expect = 1e-12
Identities = 20/133 (15%), Positives = 36/133 (27%), Gaps = 3/133 (2%)
Query: 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDI 288
K + + + F V G D +++ ++A S G
Sbjct: 229 DADKKMAVATLASETLPLLAVTFITESSLVAAGHDCF-PVLFTYDSAAGKLSFGGRLDVP 287
Query: 289 TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP-RPGSVYQLLS 347
+ A + D + H +V+ I+ Q +
Sbjct: 288 KQSSQRGLTARERFQNLDKKASSEGSAAA-GAGLDSLHKNSVSQISVLSGGKAKCSQFCT 346
Query: 348 SSDDGTCRIWDAR 360
+ DG IWD R
Sbjct: 347 TGMDGGMSIWDVR 359
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 51.8 bits (122), Expect = 4e-07
Identities = 23/196 (11%), Positives = 52/196 (26%), Gaps = 29/196 (14%)
Query: 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDI 288
+ + + V+ F +G V S D V + + +A+ +
Sbjct: 187 KMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPL 246
Query: 289 TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS 348
+ + ++LVA+ DC ++ G +
Sbjct: 247 LAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQR----------GL 295
Query: 349 SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG---- 404
+ + D + S G A + + + + + G
Sbjct: 296 TARERFQNLDKKAS--------------SEGSAAAGAGLDSLHKNSVSQISVLSGGKAKC 341
Query: 405 TVFVTGSSDTLARVWN 420
+ F T D +W+
Sbjct: 342 SQFCTTGMDGGMSIWD 357
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 79.6 bits (194), Expect = 2e-16
Identities = 34/296 (11%), Positives = 71/296 (23%), Gaps = 16/296 (5%)
Query: 319 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA 378
+ + GH +TA+ +P L+S S DG W + I ++ A
Sbjct: 5 VLKTISGHNKGITALTVNP-------LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKA 57
Query: 379 GR-NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID 437
+ + + T + +
Sbjct: 58 QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV 117
Query: 438 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWI 497
L+ + V+ Q + K + + + +I
Sbjct: 118 RLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYI 177
Query: 498 PRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 557
Y L+ R I P ++ V
Sbjct: 178 AAGDVMG-----KILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVAT 232
Query: 558 AIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612
+D I +++ ++ +L H + L + S+G D W++
Sbjct: 233 GSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PSTLV-SSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.4 bits (144), Expect = 5e-10
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 5/90 (5%)
Query: 270 WSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL-PISVLRGHTA 328
+ + + LVA+ S D I ++ + + I L H
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 259
Query: 329 AVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358
V + + L+SS D + W+
Sbjct: 260 GVNNLLWETPS----TLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.9 bits (135), Expect = 6e-09
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Query: 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY-CLASCRGHEGD 287
+ I + + V TGS D + I+S++ + + H+
Sbjct: 201 WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDG 260
Query: 288 ITDLAVSSNNALVASASNDCIIRVWR 313
+ +L + + LV S+ D I+ W
Sbjct: 261 VNNLLWETPSTLV-SSGADACIKRWN 285
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 77.7 bits (189), Expect = 1e-15
Identities = 49/338 (14%), Positives = 87/338 (25%), Gaps = 46/338 (13%)
Query: 277 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR-GHTAAVTAIAF 335
GH IT L+ S++ + SA + I W + G+ V H +T I
Sbjct: 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63
Query: 336 SPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395
+ + L + S D ++ A S + S Q
Sbjct: 64 TSK----GDLFTVSWDDHLKVVPAGGSGVDSSKAVAN-----------------KLSSQP 102
Query: 396 FCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCA 455
A +A+G + V +A + S + V
Sbjct: 103 LGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHV 162
Query: 456 VASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYH 515
+ K P S +N + IP S ++ + A
Sbjct: 163 YKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTF 222
Query: 516 LKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLV 575
+ P N + +D + VWN S
Sbjct: 223 HTAKVACVSWSPD-----------------------NVRLATGSLDNSVIVWNMNKPSDH 259
Query: 576 HSLTGHTESTYVLDVHPFNP-RIAMSAGYDGKTIVWDI 612
+ + ++ + +SAG D W++
Sbjct: 260 PIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 68.5 bits (165), Expect = 1e-12
Identities = 35/334 (10%), Positives = 80/334 (23%), Gaps = 43/334 (12%)
Query: 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVS 294
+ GH A+ G+ + + + + W + T H IT + +
Sbjct: 5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64
Query: 295 SNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354
S L + +D + V G+ S + + + + +++
Sbjct: 65 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIA-VAACYKHIA 123
Query: 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDT 414
+ ++ + + + +A A + V + T
Sbjct: 124 IYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEIT 183
Query: 415 LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 474
N ++ + + ++ +
Sbjct: 184 SVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH--------------TAKVAC 229
Query: 475 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ 534
+ + + T S D S I+W HP
Sbjct: 230 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI---------------------------I 262
Query: 535 RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWN 568
V L+ +++A D I WN
Sbjct: 263 IKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 51.9 bits (122), Expect = 3e-07
Identities = 30/300 (10%), Positives = 55/300 (18%), Gaps = 44/300 (14%)
Query: 322 VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRN 381
V GH A+TA++ S G L S+ +G WD
Sbjct: 7 VRYGHNKAITALSSSA-DGKT--LFSADAEGHINSWDIS-------------------TG 44
Query: 382 MAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG 441
++ + I + G +F D L V N G
Sbjct: 45 ISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLG 104
Query: 442 HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSR 501
+ V S + S + +
Sbjct: 105 LAVSADGDIAVAA---------------CYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ 149
Query: 502 RSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD 561
+ + + P +
Sbjct: 150 FVAVGGQDSKVHVY-------KLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRK 202
Query: 562 CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIY 621
+ + + + D IVW++ + I
Sbjct: 203 VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPII 262
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 51.9 bits (122), Expect = 3e-07
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Query: 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA--YCLASCRGHEG 286
++ + H V C + + TGS D V +W+M + + H
Sbjct: 210 NNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAM 269
Query: 287 DITDLAVSSNNALVASASNDCIIRVWRLP 315
+ + N + SA D I+ W +P
Sbjct: 270 SSVNSVIWLNETTIVSAGQDSNIKFWNVP 298
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.6 bits (116), Expect = 2e-06
Identities = 19/177 (10%), Positives = 45/177 (25%), Gaps = 5/177 (2%)
Query: 184 HMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHR 243
+ + + + A + + + K S
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182
Query: 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASA 303
+V + + + S H + ++ S +N +A+
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG 242
Query: 304 SNDCIIRVWRLPDG--LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358
S D + VW + PI + H + ++S+ D + W+
Sbjct: 243 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET---TIVSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.1 bits (99), Expect = 2e-04
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 572 GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIY 621
GS+ GH ++ L + SA +G WDI GI R++
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLF-SADAEGHINSWDISTGISNRVF 50
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.0 bits (91), Expect = 0.002
Identities = 33/238 (13%), Positives = 62/238 (26%), Gaps = 19/238 (7%)
Query: 184 HMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHR 243
H++ V A S A +
Sbjct: 77 HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPIS 136
Query: 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASC-RGHEGDITDLAVSSNNALVAS 302
C ++V G D V ++ + A H +IT +A S+N A + +
Sbjct: 137 YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVA 196
Query: 303 ASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 362
+ + + + ++ T +A +L + S D + +W+
Sbjct: 197 TDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP 256
Query: 363 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
P I G + N T V+ D+ + WN
Sbjct: 257 SDHPIIIK------------------GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 73.2 bits (178), Expect = 5e-14
Identities = 28/364 (7%), Positives = 75/364 (20%), Gaps = 42/364 (11%)
Query: 251 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD-ITDLAVSSNNA-LVASASNDCI 308
Y+I + + + + + SC + ++ +N ++
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 309 IRVWRLPDGLPISVLR------GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 362
I L ++ + A SP VY ++ +
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVY---ATVNPTQRLNDHYVVK 120
Query: 363 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNAC 422
++ P Q++ +G+++V G V
Sbjct: 121 PPRLEVFSTADGLEAKPVRT------FPMPRQVYLMRAADDGSLYVAGPDIYKMDVKT-- 172
Query: 423 KPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHD 482
L N + + + +
Sbjct: 173 ----------GKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQ 221
Query: 483 NIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQ------------PPRG 530
+ T + ++ ++H + + P P +
Sbjct: 222 DPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQ 281
Query: 531 GPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDV 590
+ + + + + V+N V ++
Sbjct: 282 RKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTTP 341
Query: 591 HPFN 594
F
Sbjct: 342 QVFI 345
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 65.5 bits (158), Expect = 2e-11
Identities = 26/344 (7%), Positives = 73/344 (21%), Gaps = 33/344 (9%)
Query: 291 LAVSSNNALVASASNDCIIRVWRLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSS 349
A+ + + + + + V + +P + Y + ++
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAY--VLNN 59
Query: 350 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 409
G D + + + SS G ++ A + +G
Sbjct: 60 HYGDIYGIDLDTCKNT--------------FHANLSSVPGEVGRSMYSFAISPDGKEVYA 105
Query: 410 GSSDTLARVWNACKPNTDDS---DQPNHEIDVLSGHE--NDVNYVQFSGCAVASRFSLAD 464
+ T + E + V ++ +
Sbjct: 106 TVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDI 165
Query: 465 SSKEDSTPKFKNSWFCHDNI--VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPP 522
+ T K+ + + + D R + K P
Sbjct: 166 YKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT 225
Query: 523 MPPQ-------PPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLV 575
G + + + R+ ++ L+
Sbjct: 226 ADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLI 285
Query: 576 HSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR 619
+ + Y + ++ G V++ ++
Sbjct: 286 KAA-NLDHTYYCVAFDKKGDKLY-LGGTFNDLAVFNPDTLEKVK 327
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 44.7 bits (104), Expect = 6e-05
Identities = 33/311 (10%), Positives = 63/311 (20%), Gaps = 61/311 (19%)
Query: 160 GRGSFSLLSYDRDKGQNEIDHPPA-----HMRWPHMYADQVRGLGLREIGGGFTRHHRAP 214
+ D D +N + R + +A G + R +
Sbjct: 58 NNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY 117
Query: 215 SIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME- 273
++ + + R VY G + G D + + + +
Sbjct: 118 VVKPPRLEVFSTADG--LEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKY 175
Query: 274 ---------------TAYCLASCRGHEGDITDL------AVSSNNALVASASNDCIIRVW 312
L + A+A
Sbjct: 176 TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV 235
Query: 313 RLPDGLPISVLRG-HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIP 371
L G + T SP+ +D + +
Sbjct: 236 DLKTGKTHTQEFADLTELYFTGLRSPK----DPNQIYGVLNRLAKYDLKQRKLIKAA--- 288
Query: 372 RPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQ 431
H +C AF+ G G + V+N D+ +
Sbjct: 289 ------------------NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNP------DTLE 324
Query: 432 PNHEIDVLSGH 442
I + G
Sbjct: 325 KVKNIKLPGGD 335
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.2 bits (175), Expect = 6e-14
Identities = 61/381 (16%), Positives = 114/381 (29%), Gaps = 90/381 (23%)
Query: 231 QKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITD 290
+Q I VYC +D + +++G D +KIW T C GH G +
Sbjct: 3 HSLQRIHCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL- 59
Query: 291 LAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD 350
+ + ++ + S+D +RVW + G ++ L H AV + F+
Sbjct: 60 -CLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCS-----K 113
Query: 351 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG 410
D + +WD + H+ + + V+
Sbjct: 114 DRSIAVWDMASPTDITLRRVLVG-------------------HRAAVNVVDFDDKYIVSA 154
Query: 411 SSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDS 470
S D +VWN + L+GH+ + +Q+
Sbjct: 155 SGDRTIKVWNT---------STCEFVRTLNGHKRGIACLQYRDR---------------- 189
Query: 471 TPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRG 530
+V+ S D + +W L+V
Sbjct: 190 ------------LVVSGSSDNTIRLWDIECGA------------CLRVLEGHEELVRCIR 225
Query: 531 GPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDV 590
+RI+ + VW L + A + +L H+ + L
Sbjct: 226 FDNKRIVSGAYDGKIKVWDLVA----------ALDPRAPAGTLCLRTLVEHSGRVFRLQ- 274
Query: 591 HPFNPRIAMSAGYDGKTIVWD 611
F+ +S+ +D ++WD
Sbjct: 275 --FDEFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.8 bits (135), Expect = 6e-09
Identities = 38/231 (16%), Positives = 73/231 (31%), Gaps = 30/231 (12%)
Query: 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF 451
S ++C ++ V+G D ++W+ +L+GH V +Q+
Sbjct: 15 SKGVYCLQYD--DQKIVSGLRDNTIKIWDK---------NTLECKRILTGHTGSVLCLQY 63
Query: 452 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 511
+ + S DS+ + + + A W
Sbjct: 64 DERVIITGSS--DSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121
Query: 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD 571
A + + + V D++++++A D I VWN +
Sbjct: 122 MASPTDITLRRVLVGHRA--------------AVNVVDFDDKYIVSASGDRTIKVWNTST 167
Query: 572 GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE 622
V +L GH + R+ +S D +WDI G +R+ E
Sbjct: 168 CEFVRTLNGHKRGIAC---LQYRDRLVVSGSSDNTIRLWDIECGACLRVLE 215
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.8 bits (135), Expect = 7e-09
Identities = 47/306 (15%), Positives = 83/306 (27%), Gaps = 94/306 (30%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRS----------------------------------- 254
++ + + GH +V C +D
Sbjct: 42 KNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL 101
Query: 255 ---GRYVITGSDDRLVKIWSMETAYCL-ASCRGHEGDITDLAVSSNNALVASASNDCIIR 310
++T S DR + +W M + + V ++ + SAS D I+
Sbjct: 102 RFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIK 161
Query: 311 VWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYI 370
VW + L GH + + + R ++S S D T R+WD
Sbjct: 162 VWNTSTCEFVRTLNGHKRGIACLQYRDR-----LVVSGSSDNTIRLWDIECGAC------ 210
Query: 371 PRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD 430
+ H+ + V+G+ D +VW+ +
Sbjct: 211 ----------------LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAP 254
Query: 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD 490
+ L H V +QF IV+ S D
Sbjct: 255 AGTLCLRTLVEHSGRVFRLQFDE----------------------------FQIVSSSHD 286
Query: 491 GSAIIW 496
+ +IW
Sbjct: 287 DTILIW 292
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 67.5 bits (163), Expect = 3e-12
Identities = 24/332 (7%), Positives = 67/332 (20%), Gaps = 23/332 (6%)
Query: 256 RYVITGSDDRLVKIWSMETAYCLASCRGHE--GDITDLAVSSNNA-LVASASNDCIIRVW 312
Y++ + + + E + V+ A+ + +
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 313 RLPDGLPISVLRGHTA-----AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPR 367
L G + + T ++ A SP ++ S
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121
Query: 368 IYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTD 427
A + +++ + + G+ + +
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181
Query: 428 DSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC 487
D S + D + + + +
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTA--------RKDIDPADPTAYRTGLLTMDLETGEMAM 233
Query: 488 SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 547
++ + + K + L+ + +P P +
Sbjct: 234 REVRIMDVFYFSTAVNPAKTRAFGAYNVLES-------FDLEKNASIKRVPLPHSYYSVN 286
Query: 548 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLT 579
S D V + ++A +
Sbjct: 287 VSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 57.9 bits (138), Expect = 4e-09
Identities = 31/320 (9%), Positives = 74/320 (23%), Gaps = 20/320 (6%)
Query: 299 LVASASNDCIIRVWRLPDGLPISVLRGHTA--AVTAIAFSPRPGSVYQLLSSSDDGTCRI 356
+ + + + V V+ A +P Y + + +
Sbjct: 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAY--ATVNKSESLVK 60
Query: 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLA 416
D + RI + P + V A S P + + T
Sbjct: 61 IDLVTGETLGRIDLSTPEERVKSLFGAALS---PDGKTLAIYESPVRLELTHFEVQPTRV 117
Query: 417 RVWNACKPNTDDSDQPNHEIDVLSGHEND----VNYVQFSGCAVASRFSLADSSKEDSTP 472
+++A + + + +I +L+ + + + D +
Sbjct: 118 ALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEA 177
Query: 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGP 532
+ G +R+ A L G
Sbjct: 178 ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET-------GE 230
Query: 533 RQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHP 592
V +++ A + ++ + + + S Y ++V
Sbjct: 231 MAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVST 289
Query: 593 FNPRIAMSAGYDGKTIVWDI 612
+ G G +D
Sbjct: 290 DGSTVW-LGGALGDLAAYDA 308
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 47.5 bits (111), Expect = 1e-05
Identities = 13/138 (9%), Positives = 35/138 (25%), Gaps = 5/138 (3%)
Query: 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVA 301
A + + + +ET + + N A
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVF-YFSTAVNPAKTR 254
Query: 302 SASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY 361
+ ++ + L I + + ++ S +V+ G +DA
Sbjct: 255 AFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVW---LGGALGDLAAYDAET 310
Query: 362 SQFSPRIYIPRPSDAVAG 379
+ ++ +P +
Sbjct: 311 LEKKGQVDLPGNASMSLA 328
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 47.1 bits (110), Expect = 1e-05
Identities = 11/163 (6%), Positives = 35/163 (21%), Gaps = 5/163 (3%)
Query: 179 DHPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKR 238
P + A + + F + TM + +
Sbjct: 174 SWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM 233
Query: 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA 298
V+ + +++ + +E + + VS++ +
Sbjct: 234 REVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGS 292
Query: 299 LVASASNDCIIRVWRLPDGLPISVLR----GHTAAVTAIAFSP 337
V + + + + + F+
Sbjct: 293 TVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFTR 335
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 61.7 bits (148), Expect = 3e-10
Identities = 40/351 (11%), Positives = 83/351 (23%), Gaps = 29/351 (8%)
Query: 301 ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVY-------QLLSSSDDGT 353
A + V G I ++ G + + + ++
Sbjct: 22 AHFAAVTQQFVIDGEAGRVIGMIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDY 79
Query: 354 CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD 413
++D + I +P P G + +
Sbjct: 80 VEVFDPVTLLPTADIELPDA----------PRFLVGTYPWMTSLTPDGKTLLFYQFSPAP 129
Query: 414 TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS--GCAVASRFSLADSSKEDST 471
+ V K D P+ + G F + + T
Sbjct: 130 AVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT 186
Query: 472 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRG- 530
F N S+ ++W + + H A L + G
Sbjct: 187 EVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGW 246
Query: 531 --GPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVL 588
G Q++ + + + V +A G + E +
Sbjct: 247 RPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSIN 306
Query: 589 DVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRDGASIILSDDVG 639
P + + D + D G +R +++ G +I + D+G
Sbjct: 307 VSQDEKPLLYALSTGDKTLYIHDAESGEELR--SVNQLGHGPQVITTADMG 355
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 45.9 bits (107), Expect = 3e-05
Identities = 14/206 (6%), Positives = 42/206 (20%), Gaps = 31/206 (15%)
Query: 184 HMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVR--- 240
+ + + ++ + AP + + + +
Sbjct: 128 APAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE 187
Query: 241 ----GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET--AYCLASCRGHEGDITDLA-- 292
+ + + ++ + + + + A L +
Sbjct: 188 VFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR 247
Query: 293 ------------------VSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIA 334
+ + + V G ++ + +I
Sbjct: 248 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSIN 306
Query: 335 FSPRPGSVYQLLSSSDDGTCRIWDAR 360
S S+ D T I DA
Sbjct: 307 VSQD-EKPLLYALSTGDKTLYIHDAE 331
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 60.0 bits (144), Expect = 1e-09
Identities = 50/387 (12%), Positives = 99/387 (25%), Gaps = 55/387 (14%)
Query: 252 DRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRV 311
D + +T D + + ++ + + +S++ + D I +
Sbjct: 29 DLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDM 87
Query: 312 WRLPDGLPISVLR-----GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSP 366
L P V + ++ + I D P
Sbjct: 88 IDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTI--AGAYWPPQFAIMDG--ETLEP 143
Query: 367 RIYIPRPSDAVAGRNMAPSSS----AGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNAC 422
+ + V + P H F G V + D +
Sbjct: 144 KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD-----IDNL 198
Query: 423 KPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW---- 478
+ + + S H + S S K +
Sbjct: 199 TVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGAN 258
Query: 479 FCHDN----IVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ 534
F H T +I I ++HP+ A W + L+ GG
Sbjct: 259 FVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYA-WKKVAELQGQ----------GGGSL 307
Query: 535 RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLD----- 589
I P+ ++ V D F A + + V++ + + + E + +
Sbjct: 308 FIKTHPKSSHLYV---DTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRV 364
Query: 590 VHP-FNPRIAMSAGYDGKTIVWDIWEG 615
V P +N G + + +W G
Sbjct: 365 VQPEYNK--------RGDEVWFSVWNG 383
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 57.6 bits (137), Expect = 6e-09
Identities = 38/343 (11%), Positives = 80/343 (23%), Gaps = 35/343 (10%)
Query: 241 GHRNAVYCAIFDRSGRYVITGSDD--RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA 298
+ + + I+ T + G++ + V N
Sbjct: 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG-KAEKFEENLGNVFAMGVDRNGK 98
Query: 299 LVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358
A++ I L G P + R A +T S + T
Sbjct: 99 FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM 158
Query: 359 ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV 418
+ + ++ + AF+A+ S +L
Sbjct: 159 QAIHVYDMEGRKIFAAT--------------TENSHDYAPAFDADSKNLYYLSYRSLDPS 204
Query: 419 WNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478
+ + S + + V+ N + S S A + K +
Sbjct: 205 PDRV--VLNFSFEVVSKPFVIPLIPGSPNPTKLVP---RSMTSEAGEYDLNDMYKRSSPI 259
Query: 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQA---YHLKVPPPPMPPQPPRGGPRQR 535
+ I I AA + A L ++
Sbjct: 260 NVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK----------TRK 309
Query: 536 ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL 578
+ + + S D + V+ D +I + ++
Sbjct: 310 VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 54.5 bits (129), Expect = 5e-08
Identities = 15/256 (5%), Positives = 39/256 (15%), Gaps = 41/256 (16%)
Query: 180 HPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRV 239
+ + + Y + + + I
Sbjct: 115 ETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA 174
Query: 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC-------LASCRGHEGDITDLA 292
+ Y FD + + S L G
Sbjct: 175 TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK 234
Query: 293 VSSNNALVASAS-------NDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQL 345
+ + + D I L +
Sbjct: 235 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEF---AAYY 291
Query: 346 LSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT 405
+ + G +D + + + + +A+
Sbjct: 292 QGAPEKGVLLKYDVK------------------------TRKVTEVKNNLTDLRLSADRK 327
Query: 406 VFVTGSSDTLARVWNA 421
+ D +
Sbjct: 328 TVMVRKDDGKIYTFPL 343
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 54.0 bits (129), Expect = 1e-07
Identities = 44/392 (11%), Positives = 90/392 (22%), Gaps = 37/392 (9%)
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV 300
R +D + +T D + + T + +S++ +
Sbjct: 18 EDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYL 76
Query: 301 ASASNDCIIRVWRLPDG-----LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355
D + + L I + + T+ +
Sbjct: 77 FVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAI--AGAYWPPQYV 134
Query: 356 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH--QIFCCAFNANGTVFVTGSSD 413
I D + + + P +A SH F G + + +D
Sbjct: 135 IMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTD 194
Query: 414 T----LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF-SGCAVASRFSLADSSKE 468
+ + D + + N + + G VA + +
Sbjct: 195 LNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHP 254
Query: 469 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPP 528
F + F + D S + HP A W
Sbjct: 255 GRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG-HPDNA-WKILDSFPALGGGSLFIKT 312
Query: 529 RGGPRQRILPTP----RGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTES 584
+ + ++ V D + + D A+ + +T
Sbjct: 313 HPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWA---GITEGQPR 369
Query: 585 TYVLDVHP-FNPRIAMSAGYDGKTIVWDIWEG 615
V FN DG + + +W G
Sbjct: 370 V----VQGEFNK--------DGTEVWFSVWNG 389
|
| >d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 118 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: P300/CAF histone acetyltransferase bromodomain species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.8 bits (108), Expect = 3e-06
Identities = 17/113 (15%), Positives = 40/113 (35%), Gaps = 4/113 (3%)
Query: 1628 EQPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQS 1687
++PR + ++L S + Q Q + + + ++ + P+ L +
Sbjct: 6 KEPR----DPDQLYSTLKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSE 61
Query: 1688 RLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSLK 1740
RL+N YY + D+ + +N + Y ++ L +
Sbjct: 62 RLKNRYYVSKKLFMADLQRVFTNCKEYNPPESEYYKCANILEKFFFSKIKEAG 114
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 48.7 bits (114), Expect = 3e-06
Identities = 35/326 (10%), Positives = 70/326 (21%), Gaps = 27/326 (8%)
Query: 259 ITGSDDRLVKIWSMETAYCLASCR--GHEGDITDLAVSSN-NALVASASNDCIIRVWRLP 315
I + + + +W++ L + G + + VS + L + + +R+
Sbjct: 8 IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67
Query: 316 DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSD 375
A+T A S PGS+ + + + S
Sbjct: 68 PD---------DGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV 118
Query: 376 AVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHE 435
V H N + D
Sbjct: 119 GVVDVVE-----GLDGCHSANISPDNR-----TLWVPALKQDRICLFTVSDDGHLVAQDP 168
Query: 436 IDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAII 495
+V + ++ F + +S D +
Sbjct: 169 AEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSD 228
Query: 496 WIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI--LPTPRGVNMIVWSLDNR 553
+ R A + G + PT +
Sbjct: 229 TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGK 288
Query: 554 FVLAAIMDC-RICVW--NAADGSLVH 576
+++AA I V+ G L
Sbjct: 289 YLIAAGQKSHHISVYEIVGEQGLLHE 314
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 46.0 bits (107), Expect = 2e-05
Identities = 33/323 (10%), Positives = 67/323 (20%), Gaps = 49/323 (15%)
Query: 259 ITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL 318
I S+ + + + + A+
Sbjct: 6 IANSESDNISVIDVTSNKVTATIPVGSN-------------------------------- 33
Query: 319 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA 378
SP VY ++++ I D + + VA
Sbjct: 34 -----------PMGAVISPDGTKVY--VANAHSNDVSIIDTATNNVIATVPAGSSPQGVA 80
Query: 379 GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDV 438
+ + TV T + N + V
Sbjct: 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTV 140
Query: 439 LSGHENDVNYVQFSGC--AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 496
+ + + D +K S D + D +
Sbjct: 141 SVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA 200
Query: 497 IPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVL 556
P +P+ + K RI P I + D + V
Sbjct: 201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI-PVGPDPAGIAVTPDGKKVY 259
Query: 557 AAI-MDCRICVWNAADGSLVHSL 578
A+ + V + A ++ ++
Sbjct: 260 VALSFCNTVSVIDTATNTITATM 282
|
| >d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: GCN5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.3 bits (99), Expect = 4e-05
Identities = 13/94 (13%), Positives = 33/94 (35%)
Query: 1638 NKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGL 1697
++L + L + + + S+ ++ P+ L + RL + YY
Sbjct: 1 DQLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTR 60
Query: 1698 EAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDL 1731
+ D+ +++N Y +++ L
Sbjct: 61 KLFVADLQRVIANCREYNPPDSEYCRCASALEKF 94
|
| >d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 139 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (93), Expect = 4e-04
Identities = 11/70 (15%), Positives = 28/70 (40%)
Query: 1671 NFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSD 1730
++ P+ L ++ + Y E + + +++ N+ +Y G L+ + + D
Sbjct: 58 DYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLD 117
Query: 1731 LVTRTLSSLK 1740
L L +
Sbjct: 118 LCDEKLKEKE 127
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 41.1 bits (95), Expect = 0.001
Identities = 30/349 (8%), Positives = 68/349 (19%), Gaps = 56/349 (16%)
Query: 325 GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD-------------------------- 358
+ + L + GT W
Sbjct: 17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSG 76
Query: 359 ---ARYSQFSPRIYIPRPSDAVAGRNMA----------PSSSAGPQSHQIFCCAFNANG- 404
A S R + +D V + P + ++ A+
Sbjct: 77 SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA 136
Query: 405 TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG----HENDVNYVQFSGCAVASRF 460
+ + A + + S + S A +
Sbjct: 137 CLLFFLFGSSAAAGLSV------PGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAAS 190
Query: 461 SLADSSKEDSTPKFKNSWFCHDNI---VTCSRDGSAIIWIPRSRR-SHPKAARWTQAYHL 516
LA + + + + G + + S AA T +
Sbjct: 191 DLAAAP-AAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAI 249
Query: 517 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVH 576
R Q + + I+ A+ G
Sbjct: 250 DGNESGRKADNFRSAGFQMVAKLKNT-DGIMILTVEHSRSCLAAAENTSSVTASVGQTSG 308
Query: 577 SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISR 625
++ +S ++ ++ ++D E+ +
Sbjct: 309 PISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK 357
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1749 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.98 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.97 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.97 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.97 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.97 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.97 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.94 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.94 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.94 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.93 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.91 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.9 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.89 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.88 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.87 | |
| d1e6ia_ | 111 | GCN5 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.86 | |
| d3d7ca1 | 102 | GCN5 {Human (Homo sapiens) [TaxId: 9606]} | 99.85 | |
| d1eqfa2 | 128 | TAFII250 double bromodomain module {Human (Homo sa | 99.85 | |
| d1wuma1 | 118 | P300/CAF histone acetyltransferase bromodomain {Hu | 99.85 | |
| d1eqfa1 | 139 | TAFII250 double bromodomain module {Human (Homo sa | 99.85 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.84 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.82 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.81 | |
| d3dwya1 | 114 | CREB-binding protein, CBP {Human (Homo sapiens) [T | 99.8 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.78 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.74 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.71 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.61 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.48 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.43 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.41 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.33 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.3 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.29 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.26 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.18 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.13 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.11 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.08 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.06 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.06 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.02 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.92 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.91 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.89 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.49 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.27 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 98.12 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.04 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.94 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.9 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.79 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.7 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.07 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.0 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.9 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.65 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.3 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.19 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 95.88 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 95.65 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 95.51 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 94.84 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 94.22 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 93.36 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 92.46 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 90.12 | |
| d1mhna_ | 59 | Survival motor neuron protein 1, smn {Human (Homo | 88.38 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 87.07 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 86.86 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=7.7e-44 Score=307.74 Aligned_cols=310 Identities=21% Similarity=0.347 Sum_probs=270.1
Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 03799706898779999979999999970874899997789808999716789859999968996799983899099998
Q 000270 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1749)
Q Consensus 234 ~~i~tL~GH~~~VtsIaFSpDG~~LATGS~DGtIkIWDl~Tg~~i~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrIWD 313 (1749)
...++|+||.+.|+|++|+|++++||||+.||+|+|||+.+++++.++.+|...|.+++|++++.++++++.++.+.+|+
T Consensus 8 ~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (317)
T d1vyhc1 8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 87 (317)
T ss_dssp SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred CCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 84489858888768999938989999993899299998999979999957888677776301111011111111101110
Q ss_pred CCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89995289960778855999952699962489963289909999768895545251379997334877788888999997
Q 000270 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1749)
Q Consensus 314 l~tgk~i~tL~gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~ 393 (1749)
.........+.+|...+.++.|++++. .+++++.|+.+++|++.++.....+. .+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~--------------------~~~~ 144 (317)
T d1vyhc1 88 FQGFECIRTMHGHDHNVSSVSIMPNGD---HIVSASRDKTIKMWEVQTGYCVKTFT--------------------GHRE 144 (317)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSSS---EEEEEETTSEEEEEETTTCCEEEEEE--------------------CCSS
T ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCC---EEEEECCCCCEEEEECCCCEEEEEEC--------------------CCCC
T ss_conf 011111111000000000000169985---57765267523575114430346871--------------------6777
Q ss_pred CEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 42799984799899994189809999389999989999985124312789982799982787222233346877888875
Q 000270 394 QIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1749)
Q Consensus 394 ~V~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~ 473 (1749)
.+.+++|++++.+|++++.|+.|++|++.+ ......+.+|...+.++.|++........... ...
T Consensus 145 ~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~ 209 (317)
T d1vyhc1 145 WVRMVRPNQDGTLIASCSNDQTVRVWVVAT---------KECKAELREHRHVVECISWAPESSYSSISEAT------GSE 209 (317)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTT---------CCEEEEECCCSSCEEEEEECCSCGGGGGGGCC------SCC
T ss_pred CCEEEECCCCCCEEEEEECCCEEEEEEECC---------CEEEEEEECCCCCCEEEEEEECCCCCEEECCC------CCE
T ss_conf 630000166799999992798299975125---------40347882477873379986325641110345------630
Q ss_pred CCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 55655579989999489809999368888885322211112457999999999999999511269999801999857998
Q 000270 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 553 (1749)
Q Consensus 474 ~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIafSPDG~ 553 (1749)
.......+..+++++.||.|++|++.+++ ++..+.+|...|.+++|+|+++
T Consensus 210 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~-----------------------------~~~~~~~~~~~v~~~~~~~~~~ 260 (317)
T d1vyhc1 210 TKKSGKPGPFLLSGSRDKTIKMWDVSTGM-----------------------------CLMTLVGHDNWVRGVLFHSGGK 260 (317)
T ss_dssp -------CCEEEEEETTSEEEEEETTTTE-----------------------------EEEEEECCSSCEEEEEECSSSS
T ss_pred EEEECCCCCEEEECCCCCEEEEEECCCCC-----------------------------EEEEEECCCCCEEEEEECCCCC
T ss_conf 34302588614751699789998889996-----------------------------8899968899879999879999
Q ss_pred EEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEE
Q ss_conf 9999967982999989999558971289988399999489994899994799099995
Q 000270 554 FVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1749)
Q Consensus 554 ~LASgs~DGtI~IWDl~tgkli~tL~gHs~~VtsIafSP~d~rlLvSas~DGtIrIWD 611 (1749)
+|++++.||.|++||+.+++++.++.+|...|++++|+| ++.+|++++.||+|+|||
T Consensus 261 ~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~-~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 261 FILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECS-SSSCEEEEETTSEEEEEC
T ss_pred EEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECC-CCCEEEEEECCCEEEEEC
T ss_conf 999997989499999999919999928999889999949-999999992899499829
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-42 Score=299.48 Aligned_cols=288 Identities=15% Similarity=0.287 Sum_probs=247.5
Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCE-----EEEEECCCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 440379970689877999997999999997087489999778980-----899971678985999996899679998389
Q 000270 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY-----CLASCRGHEGDITDLAVSSNNALVASASND 306 (1749)
Q Consensus 232 t~~~i~tL~GH~~~VtsIaFSpDG~~LATGS~DGtIkIWDl~Tg~-----~i~tL~gHs~~VtsLafSPDg~lLASGS~D 306 (1749)
..+.++++ +|...|+|++|+|+|++||+|+ ||.|+|||+.++. ......+|.+.|.+++|+|++++|++++.|
T Consensus 41 ~~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~d 118 (337)
T d1gxra_ 41 HARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA 118 (337)
T ss_dssp EEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS
T ss_pred CCEEEEEC-CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECC
T ss_conf 75499987-9999289999989999999997-998899773677633116876404889968999986799889886123
Q ss_pred CEEEEEECCCC--CEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 90999988999--5289960778855999952699962489963289909999768895545251379997334877788
Q 000270 307 CIIRVWRLPDG--LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 384 (1749)
Q Consensus 307 GtIrIWDl~tg--k~i~tL~gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~ 384 (1749)
+.|++|++... .....+.+|...+.+++|+|++. ++++++.|+.|.+|++.++......
T Consensus 119 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~s~~~d~~i~~~~~~~~~~~~~~---------------- 179 (337)
T d1gxra_ 119 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK---VCFSCCSDGNIAVWDLHNQTLVRQF---------------- 179 (337)
T ss_dssp SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS---EEEEEETTSCEEEEETTTTEEEEEE----------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCC----------------
T ss_conf 321111111111111111111111111111111111---1111111111111111111111111----------------
Q ss_pred CCCCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 88899999742799984799899994189809999389999989999985124312789982799982787222233346
Q 000270 385 SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLAD 464 (1749)
Q Consensus 385 ~~s~~~h~~~V~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~ 464 (1749)
..+...+.+++|++++..+++++.|+.|++|++.+ ...+. ...|...|.+++|++++
T Consensus 180 ----~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~---------~~~~~-~~~~~~~i~~l~~~~~~--------- 236 (337)
T d1gxra_ 180 ----QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE---------GRQLQ-QHDFTSQIFSLGYCPTG--------- 236 (337)
T ss_dssp ----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT---------TEEEE-EEECSSCEEEEEECTTS---------
T ss_pred ----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------CEEEC-CCCCCCCEEEEEECCCC---------
T ss_conf ----11111111012344432112235665532111111---------00000-24666615799971530---------
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 87788887555655579989999489809999368888885322211112457999999999999999511269999801
Q 000270 465 SSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVN 544 (1749)
Q Consensus 465 ~~~~~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~Vt 544 (1749)
+.|++++.||.+++|++.+.. ......|...|+
T Consensus 237 -----------------~~l~~~~~d~~i~i~d~~~~~------------------------------~~~~~~~~~~i~ 269 (337)
T d1gxra_ 237 -----------------EWLAVGMESSNVEVLHVNKPD------------------------------KYQLHLHESCVL 269 (337)
T ss_dssp -----------------SEEEEEETTSCEEEEETTSSC------------------------------EEEECCCSSCEE
T ss_pred -----------------CCCCEECCCCCCCCCCCCCCC------------------------------CCCCCCCCCCCC
T ss_conf -----------------300000025642111111111------------------------------000012456541
Q ss_pred EEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEEC
Q ss_conf 99985799899999679829999899995589712899883999994899948999947990999958
Q 000270 545 MIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1749)
Q Consensus 545 sIafSPDG~~LASgs~DGtI~IWDl~tgkli~tL~gHs~~VtsIafSP~d~rlLvSas~DGtIrIWDi 612 (1749)
+++|+|++++|++++.|+.|++||+.+++++..+. |...|++++|+| ++++|++++.||.|+|||+
T Consensus 270 ~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~-d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISV-DDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECT-TSCEEEEEETTSCEEEEEE
T ss_pred EEEECCCCCEEEEEECCCEEEEEECCCCCEEEECC-CCCCEEEEEEEC-CCCEEEEEECCCEEEEEEE
T ss_conf 69998999999999489969999899997999926-999879999927-9999999908996999977
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.1e-43 Score=306.80 Aligned_cols=306 Identities=22% Similarity=0.402 Sum_probs=251.5
Q ss_pred EEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEC------------------CCCCCEEEEEECCCCC
Q ss_conf 9970689877999997999999997087489999778980899971------------------6789859999968996
Q 000270 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR------------------GHEGDITDLAVSSNNA 298 (1749)
Q Consensus 237 ~tL~GH~~~VtsIaFSpDG~~LATGS~DGtIkIWDl~Tg~~i~tL~------------------gHs~~VtsLafSPDg~ 298 (1749)
....+|.+.|+|++|+|+|++||+|+ |+.|+||++.++..+..+. +|...|++++|+|+++
T Consensus 56 ~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ 134 (388)
T d1erja_ 56 HKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK 134 (388)
T ss_dssp EEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred EEECCCCCCEEEEEECCCCCEEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
T ss_conf 76079999689999999999999994-99489998136405766316654432443211101467789889999889998
Q ss_pred EEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCC
Q ss_conf 79998389909999889995289960778855999952699962489963289909999768895545251379997334
Q 000270 299 LVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA 378 (1749)
Q Consensus 299 lLASGS~DGtIrIWDl~tgk~i~tL~gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~~~s 378 (1749)
+|++|+.||.|++|+...++.+..+.+|...|.++.|++++. .+++++.++.+++||..+........
T Consensus 135 ~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---~~~~~~~~~~i~~~d~~~~~~~~~~~--------- 202 (388)
T d1erja_ 135 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD---KLVSGSGDRTVRIWDLRTGQCSLTLS--------- 202 (388)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS---EEEEEETTSEEEEEETTTTEEEEEEE---------
T ss_pred CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCEEEEEEECCCCCCCCCCC---------
T ss_conf 012134441111211111111111111111111101111111---11122210156541011111100001---------
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECC-CCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCC
Q ss_conf 877788888999997427999847-9989999418980999938999998999998512431278998279998278722
Q 000270 379 GRNMAPSSSAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVA 457 (1749)
Q Consensus 379 g~~~~~~~s~~~h~~~V~sIafSP-DG~~LasGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~sIafSpdg~a 457 (1749)
+.....++.+.+ ++.+|++++.|+.|++|+..++...... ........+|...|.+++|++++
T Consensus 203 ------------~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~-- 266 (388)
T d1erja_ 203 ------------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL--DSENESGTGHKDSVYSVVFTRDG-- 266 (388)
T ss_dssp ------------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEE--C------CCCSSCEEEEEECTTS--
T ss_pred ------------CCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCEEE--CCCCCCCCCCCCCEEEEEECCCC--
T ss_conf ------------24544211236887875899738981999634557300010--24433345778987899997999--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22333468778888755565557998999948980999936888888532221111245799999999999999951126
Q 000270 458 SRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL 537 (1749)
Q Consensus 458 s~~s~~~~~~~~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~ 537 (1749)
..|++++.||.|++|++.+........ ............
T Consensus 267 ------------------------~~l~s~~~d~~i~iwd~~~~~~~~~~~-----------------~~~~~~~~~~~~ 305 (388)
T d1erja_ 267 ------------------------QSVVSGSLDRSVKLWNLQNANNKSDSK-----------------TPNSGTCEVTYI 305 (388)
T ss_dssp ------------------------SEEEEEETTSEEEEEEC--------------------------------CEEEEEE
T ss_pred ------------------------CEEEEEECCCCEEEEECCCCCCCCCCC-----------------CCCCCCEEEECC
T ss_conf ------------------------999999789928987515776432101-----------------344420011012
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEE------CCCCCCEEEEEECCCCEEEEE
Q ss_conf 99998019998579989999967982999989999558971289988399999------489994899994799099995
Q 000270 538 PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDV------HPFNPRIAMSAGYDGKTIVWD 611 (1749)
Q Consensus 538 ~h~~~VtsIafSPDG~~LASgs~DGtI~IWDl~tgkli~tL~gHs~~VtsIaf------SP~d~rlLvSas~DGtIrIWD 611 (1749)
.|...|++++|+|++++|++|+.||.|++||+.+++++.++.+|.+.|+++++ +| ++.+|+|++.||+|+||+
T Consensus 306 ~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~sp-d~~~l~s~s~Dg~I~iW~ 384 (388)
T d1erja_ 306 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP-EYNVFATGSGDCKARIWK 384 (388)
T ss_dssp CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCT-TCEEEEEEETTSEEEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCC-CCCEEEEEECCCEEEEEE
T ss_conf 4553278999889999999996989799999999969999968899789999846742589-999999991899799976
Q ss_pred CC
Q ss_conf 89
Q 000270 612 IW 613 (1749)
Q Consensus 612 i~ 613 (1749)
++
T Consensus 385 ~~ 386 (388)
T d1erja_ 385 YK 386 (388)
T ss_dssp EE
T ss_pred EE
T ss_conf 21
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.6e-41 Score=290.54 Aligned_cols=292 Identities=22% Similarity=0.363 Sum_probs=253.1
Q ss_pred CCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 40379970689877999997999999997087489999778980899971678985999996899679998389909999
Q 000270 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1749)
Q Consensus 233 ~~~i~tL~GH~~~VtsIaFSpDG~~LATGS~DGtIkIWDl~Tg~~i~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrIW 312 (1749)
++..++|+||.+.|+|++|+|++.+||||+.||+|+|||+.++..+..+.+|...|.+++|+|++.++++|+.|+.|++|
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~ 124 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred EEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCEEECC
T ss_conf 06527988878988899998999999999789955563102102579972465337756760121144310133201013
Q ss_pred ECCCC----CEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 88999----52899607788559999526999624899632899099997688955452513799973348777888889
Q 000270 313 RLPDG----LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 388 (1749)
Q Consensus 313 Dl~tg----k~i~tL~gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~ 388 (1749)
+.... .....+.+|...........+. .++....+.....|............
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 181 (340)
T d1tbga_ 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDN----QIVTSSGDTTCALWDIETGQQTTTFT------------------- 181 (340)
T ss_dssp ESSSSCSCCCEEEEECCCSSCEEEEEEEETT----EEEEEETTTEEEEEETTTTEEEEEEE-------------------
T ss_pred CCCCCCCCCCCCEECCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCC-------------------
T ss_conf 3222212221110013542110111111111----11111244543200123221111123-------------------
Q ss_pred CCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99997427999847998999941898099993899999899999851243127899827999827872222333468778
Q 000270 389 GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 468 (1749)
Q Consensus 389 ~~h~~~V~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~ 468 (1749)
.....+.+..+.+.+.++++|+.|+.|++||+.+ ...+..+.+|...|.+++|+|++
T Consensus 182 -~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~---------~~~~~~~~~h~~~i~~v~~~p~~------------- 238 (340)
T d1tbga_ 182 -GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE---------GMCRQTFTGHESDINAICFFPNG------------- 238 (340)
T ss_dssp -CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT---------TEEEEEECCCSSCEEEEEECTTS-------------
T ss_pred -CCCEEEEEECCCCCCCEEEEEECCCEEEEEECCC---------CCEEEEEECCCCCEEEEEECCCC-------------
T ss_conf -3101576300124421268760573699999999---------94889995788985899997998-------------
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 88875556555799899994898099993688888853222111124579999999999999995112699998019998
Q 000270 469 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 548 (1749)
Q Consensus 469 ~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIaf 548 (1749)
.+|++++.||.|++|++........ .....+...|++++|
T Consensus 239 -------------~~l~s~s~d~~i~~~~~~~~~~~~~---------------------------~~~~~~~~~i~~~~~ 278 (340)
T d1tbga_ 239 -------------NAFATGSDDATCRLFDLRADQELMT---------------------------YSHDNIICGITSVSF 278 (340)
T ss_dssp -------------SEEEEEETTSCEEEEETTTTEEEEE---------------------------ECCTTCCSCEEEEEE
T ss_pred -------------CEEEEEECCCEEEEEEECCCCCCCC---------------------------CCCCCCCCCEEEEEE
T ss_conf -------------9999996999699975212211111---------------------------112244574589999
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEE
Q ss_conf 579989999967982999989999558971289988399999489994899994799099995
Q 000270 549 SLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1749)
Q Consensus 549 SPDG~~LASgs~DGtI~IWDl~tgkli~tL~gHs~~VtsIafSP~d~rlLvSas~DGtIrIWD 611 (1749)
+|++++|++|+.||.|++||+.+++++.++.+|.+.|++++|+| ++.+|+|++.||.|+|||
T Consensus 279 s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~-d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEEC-CCCEEEEECCCCEEEEEC
T ss_conf 89999999997979899999999939899848999789999908-999999990699799859
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=9.3e-41 Score=286.84 Aligned_cols=289 Identities=12% Similarity=0.122 Sum_probs=241.3
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE
Q ss_conf 68987799999799999999708748999977898089997167898599999689967999838990999988999528
Q 000270 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI 320 (1749)
Q Consensus 241 GH~~~VtsIaFSpDG~~LATGS~DGtIkIWDl~Tg~~i~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrIWDl~tgk~i 320 (1749)
.+++.+.+++++|+|+.||.++ ++.|.+|++.++.....+.+|...|++++|+|++++||+|+.||.|+||++.++...
T Consensus 15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~ 93 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93 (311)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCCEEEEEEEECCCCC
T ss_conf 7788759999969989999996-999999999999661797478888899999489996722556736746631011110
Q ss_pred --EEECCCCCCEEEEEECCCCCCCEEEEEECC--CCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf --996077885599995269996248996328--9909999768895545251379997334877788888999997427
Q 000270 321 --SVLRGHTAAVTAIAFSPRPGSVYQLLSSSD--DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 396 (1749)
Q Consensus 321 --~tL~gHs~~VtsIaFSPdg~~~~~LvSgS~--DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V~ 396 (1749)
..+.+|.+.|.+++|+|++. +|++++. +..+++|++.+++....+ ..|...|.
T Consensus 94 ~~~~~~~~~~~v~~v~~s~d~~---~l~~~~~~~~~~~~v~~~~~~~~~~~l--------------------~~h~~~v~ 150 (311)
T d1nr0a1 94 LKTTIPVFSGPVKDISWDSESK---RIAAVGEGRERFGHVFLFDTGTSNGNL--------------------TGQARAMN 150 (311)
T ss_dssp EEEEEECSSSCEEEEEECTTSC---EEEEEECCSSCSEEEEETTTCCBCBCC--------------------CCCSSCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCC--------------------CCCCCCCC
T ss_conf 0001343357543323331110---001111221111111111111111111--------------------11111111
Q ss_pred EEEECCCCC-EEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999847998-9999418980999938999998999998512431278998279998278722223334687788887555
Q 000270 397 CCAFNANGT-VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475 (1749)
Q Consensus 397 sIafSPDG~-~LasGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~ 475 (1749)
+++|+|++. .|++|+.|+.|++||+.+ ......+.+|...|.++.|+|++
T Consensus 151 ~v~~~~~~~~~l~sgs~d~~i~i~d~~~---------~~~~~~~~~~~~~i~~v~~~p~~-------------------- 201 (311)
T d1nr0a1 151 SVDFKPSRPFRIISGSDDNTVAIFEGPP---------FKFKSTFGEHTKFVHSVRYNPDG-------------------- 201 (311)
T ss_dssp EEEECSSSSCEEEEEETTSCEEEEETTT---------BEEEEEECCCSSCEEEEEECTTS--------------------
T ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCC--------------------
T ss_conf 1111211101200011221111111111---------11111111111111112347642--------------------
Q ss_pred CCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEE
Q ss_conf 65557998999948980999936888888532221111245799999999999999951126999980199985799899
Q 000270 476 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFV 555 (1749)
Q Consensus 476 ~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIafSPDG~~L 555 (1749)
+++++++.||.+++|+...+....... .......+|...|++++|+|++++|
T Consensus 202 ------~~l~~~~~d~~v~~~d~~~~~~~~~~~----------------------~~~~~~~~h~~~V~~~~~s~~~~~l 253 (311)
T d1nr0a1 202 ------SLFASTGGDGTIVLYNGVDGTKTGVFE----------------------DDSLKNVAHSGSVFGLTWSPDGTKI 253 (311)
T ss_dssp ------SEEEEEETTSCEEEEETTTCCEEEECB----------------------CTTSSSCSSSSCEEEEEECTTSSEE
T ss_pred ------CCCCCCCCCCCCCCCCCCCCCCCCCCC----------------------CCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf ------212111111111000124464112221----------------------1111110024653210247889999
Q ss_pred EEEECCCEEEEEECCCCCEEEEECCCCC---CEEEEEECCCCCCEEEEEECCCCEEEEECC
Q ss_conf 9996798299998999955897128998---839999948999489999479909999589
Q 000270 556 LAAIMDCRICVWNAADGSLVHSLTGHTE---STYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1749)
Q Consensus 556 ASgs~DGtI~IWDl~tgkli~tL~gHs~---~VtsIafSP~d~rlLvSas~DGtIrIWDi~ 613 (1749)
++|+.|+.|+|||+.++++++++..|.. .+.++.|++ ..+++++.||.|++||++
T Consensus 254 ~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~---~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 254 ASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK---QALVSISANGFINFVNPE 311 (311)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECS---SCEEEEETTCCEEEEETT
T ss_pred EEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECC---CEEEEEECCCEEEEEECC
T ss_conf 9993799699999999969999979998633299999519---999999899979999588
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=9.8e-41 Score=286.68 Aligned_cols=253 Identities=13% Similarity=0.159 Sum_probs=201.7
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCE--EEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE
Q ss_conf 89877999997999999997087489999778980--8999716789859999968996799983899099998899952
Q 000270 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY--CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLP 319 (1749)
Q Consensus 242 H~~~VtsIaFSpDG~~LATGS~DGtIkIWDl~Tg~--~i~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrIWDl~tgk~ 319 (1749)
+..+|+|++|+|+|++||+|+.|+.|+||++.+++ .+..+.+|.+.|.+++|+|++++|++++.|++|+||++.++..
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 85 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCC
T ss_conf 99883899998999999999488989999888997899999558899888999979999999997999399986203321
Q ss_pred --EEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf --899607788559999526999624899632899099997688955452513799973348777888889999974279
Q 000270 320 --ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFC 397 (1749)
Q Consensus 320 --i~tL~gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V~s 397 (1749)
...+.+|...|++++|+|++. .|++++.|+.|++|++........... ....+...|.+
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~~~---~l~~~s~d~~i~i~~~~~~~~~~~~~~----------------~~~~~~~~v~~ 146 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPNEK---KFAVGSGSRVISICYFEQENDWWVCKH----------------IKKPIRSTVLS 146 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTTSS---EEEEEETTSSEEEEEEETTTTEEEEEE----------------ECTTCCSCEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCC---CCEEECCCCCCEEEEEECCCCCCCCCC----------------CCCCCCCCCCC
T ss_conf 10012232211000111111121---100000257630254420334331110----------------01011122211
Q ss_pred EEECCCCCEEEEECCCCCEEEEECCCCCCCCCC---------CCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 998479989999418980999938999998999---------99851243127899827999827872222333468778
Q 000270 398 CAFNANGTVFVTGSSDTLARVWNACKPNTDDSD---------QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 468 (1749)
Q Consensus 398 IafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~---------q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~ 468 (1749)
++|+|++.+|++|+.|+.|++|+.......... .....+....+|...|.+++|+|++
T Consensus 147 v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g------------- 213 (371)
T d1k8kc_ 147 LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG------------- 213 (371)
T ss_dssp EEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-------------
T ss_pred CCCCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCC-------------
T ss_conf 1111111110001347679998401576431001221111111101124404766747898751233-------------
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 88875556555799899994898099993688888853222111124579999999999999995112699998019998
Q 000270 469 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 548 (1749)
Q Consensus 469 ~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIaf 548 (1749)
+.|++++.||.|++||+.++. .+..+..|..+|.+++|
T Consensus 214 -------------~~l~s~~~d~~i~iwd~~~~~-----------------------------~~~~~~~~~~~v~s~~f 251 (371)
T d1k8kc_ 214 -------------SRVAWVSHDSTVCLADADKKM-----------------------------AVATLASETLPLLAVTF 251 (371)
T ss_dssp -------------SEEEEEETTTEEEEEEGGGTT-----------------------------EEEEEECSSCCEEEEEE
T ss_pred -------------CCCCCCCCCCCCEEEEEECCC-----------------------------CEEEEECCCCCCEEEEE
T ss_conf -------------210000147860588641012-----------------------------10000014665203654
Q ss_pred CCCCCEEEEEECCCEEEEEEC
Q ss_conf 579989999967982999989
Q 000270 549 SLDNRFVLAAIMDCRICVWNA 569 (1749)
Q Consensus 549 SPDG~~LASgs~DGtI~IWDl 569 (1749)
+|++.+|++|. |+.+++|..
T Consensus 252 s~d~~~la~g~-d~~~~~~~~ 271 (371)
T d1k8kc_ 252 ITESSLVAAGH-DCFPVLFTY 271 (371)
T ss_dssp EETTEEEEEET-TSSCEEEEE
T ss_pred CCCCCEEEEEC-CCCEEEEEE
T ss_conf 69997999981-992678776
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.6e-39 Score=273.52 Aligned_cols=304 Identities=17% Similarity=0.261 Sum_probs=240.3
Q ss_pred EECCCEEEEEECCCCEE----EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC------------
Q ss_conf 70874899997789808----99971678985999996899679998389909999889995289960------------
Q 000270 261 GSDDRLVKIWSMETAYC----LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR------------ 324 (1749)
Q Consensus 261 GS~DGtIkIWDl~Tg~~----i~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrIWDl~tgk~i~tL~------------ 324 (1749)
+..++.+.+|+...... +....+|.+.|++|+|+|||++||+|+ |+.|+||++.+++.+..+.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~ 112 (388)
T d1erja_ 34 KQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENL 112 (388)
T ss_dssp EECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------
T ss_pred CCCCCCEEEECCCCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCCCCCC
T ss_conf 688970898688777620541076079999689999999999999994-9948999813640576631665443244321
Q ss_pred ------CCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf ------77885599995269996248996328990999976889554525137999733487778888899999742799
Q 000270 325 ------GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCC 398 (1749)
Q Consensus 325 ------gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V~sI 398 (1749)
+|...|++++|+|++. +|++|+.||.|++|+...+...... ..|...|.++
T Consensus 113 ~~~~~~~~~~~V~~l~~s~~~~---~l~s~~~dg~v~i~~~~~~~~~~~~--------------------~~h~~~v~~~ 169 (388)
T d1erja_ 113 NTSSSPSSDLYIRSVCFSPDGK---FLATGAEDRLIRIWDIENRKIVMIL--------------------QGHEQDIYSL 169 (388)
T ss_dssp ------CCCCBEEEEEECTTSS---EEEEEETTSCEEEEETTTTEEEEEE--------------------CCCSSCEEEE
T ss_pred CCCCCCCCCCCEEEEEECCCCC---CCEECCCCCCCCCCCCCCCCCCCCC--------------------CCCCCCCCCC
T ss_conf 1101467789889999889998---0121344411112111111111111--------------------1111111110
Q ss_pred EECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98479989999418980999938999998999998512431278998279998278722223334687788887555655
Q 000270 399 AFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1749)
Q Consensus 399 afSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~s~ 478 (1749)
+|++++..+++++.++.+++|+..+ .........+ ....++.+.+..
T Consensus 170 ~~~~~~~~~~~~~~~~~i~~~d~~~---------~~~~~~~~~~-~~~~~~~~~~~~----------------------- 216 (388)
T d1erja_ 170 DYFPSGDKLVSGSGDRTVRIWDLRT---------GQCSLTLSIE-DGVTTVAVSPGD----------------------- 216 (388)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTT---------TEEEEEEECS-SCEEEEEECSTT-----------------------
T ss_pred CCCCCCCCCCCCCCCEEEEEEECCC---------CCCCCCCCCC-CCCCCCCCCCCC-----------------------
T ss_conf 1111111111222101565410111---------1110000124-544211236887-----------------------
Q ss_pred CCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEE
Q ss_conf 57998999948980999936888888532221111245799999999999999951126999980199985799899999
Q 000270 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA 558 (1749)
Q Consensus 479 ~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIafSPDG~~LASg 558 (1749)
+.+|++++.||.|++|+..++....... .......+|...|++++|+|++++|+++
T Consensus 217 --~~~l~~~~~d~~i~i~~~~~~~~~~~~~----------------------~~~~~~~~h~~~v~~l~~s~~~~~l~s~ 272 (388)
T d1erja_ 217 --GKYIAAGSLDRAVRVWDSETGFLVERLD----------------------SENESGTGHKDSVYSVVFTRDGQSVVSG 272 (388)
T ss_dssp --CCEEEEEETTSCEEEEETTTCCEEEEEC----------------------------CCCSSCEEEEEECTTSSEEEEE
T ss_pred --CCEEEEECCCCEEEEEECCCCCCCEEEC----------------------CCCCCCCCCCCCEEEEEECCCCCEEEEE
T ss_conf --8758997389819996345573000102----------------------4433345778987899997999999999
Q ss_pred ECCCEEEEEECCCCC------------EEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEE-
Q ss_conf 679829999899995------------5897128998839999948999489999479909999589992389986000-
Q 000270 559 IMDCRICVWNAADGS------------LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISR- 625 (1749)
Q Consensus 559 s~DGtI~IWDl~tgk------------li~tL~gHs~~VtsIafSP~d~rlLvSas~DGtIrIWDi~tG~~l~tl~~~~- 625 (1749)
+.|+.|++||+.++. +......|...|++++|+| ++.+|++++.||.|++||+.+++++.++.+|.
T Consensus 273 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~ 351 (388)
T d1erja_ 273 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN 351 (388)
T ss_dssp ETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred ECCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEEEECCCC
T ss_conf 7899289875157764321013444200110124553278999889-999999996989799999999969999968899
Q ss_pred -------------CCCCCEEEEECCCCEEEEEEC
Q ss_conf -------------269999999908981999988
Q 000270 626 -------------FRDGASIILSDDVGQLYILNT 646 (1749)
Q Consensus 626 -------------fsDG~~LAsgs~DG~I~Iwdl 646 (1749)
.+++.+||+++.||.|+||++
T Consensus 352 ~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~ 385 (388)
T d1erja_ 352 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385 (388)
T ss_dssp CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred CEEEEEEECCCCCCCCCCEEEEEECCCEEEEEEE
T ss_conf 7899998467425899999999918997999762
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-38 Score=271.39 Aligned_cols=281 Identities=14% Similarity=0.165 Sum_probs=235.7
Q ss_pred EEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE-----EEEECCCCCCEEEEEECCCCCCCEEEEEECC
Q ss_conf 08999716789859999968996799983899099998899952-----8996077885599995269996248996328
Q 000270 276 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLP-----ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD 350 (1749)
Q Consensus 276 ~~i~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrIWDl~tgk~-----i~tL~gHs~~VtsIaFSPdg~~~~~LvSgS~ 350 (1749)
+.+.++ .|...|++++|+|++++||+|+ ||.|+|||+.++.. .....+|.+.|.+++|+|++. +|++++.
T Consensus 43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~---~l~s~~~ 117 (337)
T d1gxra_ 43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC---TLIVGGE 117 (337)
T ss_dssp EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS---EEEEEES
T ss_pred EEEEEC-CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCC---EEEEEEC
T ss_conf 499987-9999289999989999999997-9988997736776331168764048899689999867998---8988612
Q ss_pred CCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCC
Q ss_conf 99099997688955452513799973348777888889999974279998479989999418980999938999998999
Q 000270 351 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD 430 (1749)
Q Consensus 351 DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~ 430 (1749)
||.|++||+........... ..+...+.+++|+|++.++++++.++.|++|++.+
T Consensus 118 dg~i~iwd~~~~~~~~~~~~------------------~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~------- 172 (337)
T d1gxra_ 118 ASTLSIWDLAAPTPRIKAEL------------------TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN------- 172 (337)
T ss_dssp SSEEEEEECCCC--EEEEEE------------------ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-------
T ss_pred CCCCCCCCCCCCCCCCCCCC------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------
T ss_conf 33211111111111111111------------------11111111111111111111111111111111111-------
Q ss_pred CCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCC
Q ss_conf 99851243127899827999827872222333468778888755565557998999948980999936888888532221
Q 000270 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1749)
Q Consensus 431 q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~ 510 (1749)
........+|...|.+++|++++ ..+++++.||.+++|++++++..
T Consensus 173 --~~~~~~~~~~~~~v~~l~~s~~~--------------------------~~~~~~~~d~~v~i~d~~~~~~~------ 218 (337)
T d1gxra_ 173 --QTLVRQFQGHTDGASCIDISNDG--------------------------TKLWTGGLDNTVRSWDLREGRQL------ 218 (337)
T ss_dssp --TEEEEEECCCSSCEEEEEECTTS--------------------------SEEEEEETTSEEEEEETTTTEEE------
T ss_pred --CCCCCCCCCCCCCCCCCCCCCCC--------------------------CCCCCCCCCCCCCCCCCCCCEEE------
T ss_conf --11111111111111101234443--------------------------21122356655321111110000------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEE
Q ss_conf 11124579999999999999995112699998019998579989999967982999989999558971289988399999
Q 000270 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDV 590 (1749)
Q Consensus 511 ~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIafSPDG~~LASgs~DGtI~IWDl~tgkli~tL~gHs~~VtsIaf 590 (1749)
....+...|.+++|+|++.+|++++.|+.|++|++.++... ....|...|++++|
T Consensus 219 ------------------------~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~ 273 (337)
T d1gxra_ 219 ------------------------QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKF 273 (337)
T ss_dssp ------------------------EEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEE
T ss_pred ------------------------CCCCCCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCC-CCCCCCCCCCEEEE
T ss_conf ------------------------02466661579997153030000002564211111111100-00124565416999
Q ss_pred CCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEE-------ECCCCCEEEEECCCCEEEEEEC
Q ss_conf 4899948999947990999958999238998600-------0269999999908981999988
Q 000270 591 HPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS-------RFRDGASIILSDDVGQLYILNT 646 (1749)
Q Consensus 591 SP~d~rlLvSas~DGtIrIWDi~tG~~l~tl~~~-------~fsDG~~LAsgs~DG~I~Iwdl 646 (1749)
+| ++++|++++.||.|++||+.+++++..+... +.++|++|++++.||.|+||++
T Consensus 274 s~-~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 274 AY-CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CC-CCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEEE
T ss_conf 89-999999994899699998999979999269998799999279999999908996999977
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.5e-38 Score=271.87 Aligned_cols=288 Identities=21% Similarity=0.342 Sum_probs=246.7
Q ss_pred EEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEE
Q ss_conf 99778980899971678985999996899679998389909999889995289960778855999952699962489963
Q 000270 269 IWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS 348 (1749)
Q Consensus 269 IWDl~Tg~~i~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrIWDl~tgk~i~tL~gHs~~VtsIaFSPdg~~~~~LvSg 348 (1749)
.|... .....+|+||.+.|++|+|+|++++||+|+.||+|+|||+.+++++..+.+|...|.+++|++++. +++++
T Consensus 2 ~w~p~-~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~---~~~~~ 77 (317)
T d1vyhc1 2 EWIPR-PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK---LLASC 77 (317)
T ss_dssp CCCCC-SSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSS---EEEEE
T ss_pred CCCCC-CCCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCC---CCCCC
T ss_conf 36898-984489858888768999938989999993899299998999979999957888677776301111---01111
Q ss_pred CCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCC
Q ss_conf 28990999976889554525137999733487778888899999742799984799899994189809999389999989
Q 000270 349 SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDD 428 (1749)
Q Consensus 349 S~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~ 428 (1749)
..++.+.+|+.........+ ..+...+.++.|++++..+++++.|+.+++|++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----- 132 (317)
T d1vyhc1 78 SADMTIKLWDFQGFECIRTM--------------------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT----- 132 (317)
T ss_dssp ETTSCCCEEETTSSCEEECC--------------------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-----
T ss_pred CCCCCCCCCCCCCCCCCCCC--------------------CCCCCCCEEEECCCCCCEEEEECCCCCEEEEECCC-----
T ss_conf 11111011100111111110--------------------00000000000169985577652675235751144-----
Q ss_pred CCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCC
Q ss_conf 99998512431278998279998278722223334687788887555655579989999489809999368888885322
Q 000270 429 SDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAA 508 (1749)
Q Consensus 429 s~q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~ 508 (1749)
...+..+.+|...+.+++|++++ .+|++++.||.|++|++.+....
T Consensus 133 ----~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~l~~~~~d~~v~~~~~~~~~~~---- 178 (317)
T d1vyhc1 133 ----GYCVKTFTGHREWVRMVRPNQDG--------------------------TLIASCSNDQTVRVWVVATKECK---- 178 (317)
T ss_dssp ----CCEEEEEECCSSCEEEEEECTTS--------------------------SEEEEEETTSCEEEEETTTCCEE----
T ss_pred ----CEEEEEECCCCCCCEEEECCCCC--------------------------CEEEEEECCCEEEEEEECCCEEE----
T ss_conf ----30346871677763000016679--------------------------99999927982999751254034----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC--------------------CCCCEEEEEECCCEEEEEE
Q ss_conf 21111245799999999999999951126999980199985--------------------7998999996798299998
Q 000270 509 RWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWS--------------------LDNRFVLAAIMDCRICVWN 568 (1749)
Q Consensus 509 ~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIafS--------------------PDG~~LASgs~DGtI~IWD 568 (1749)
..+..+...+.+++|+ ..+.++++++.|+.|++|+
T Consensus 179 -------------------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 233 (317)
T d1vyhc1 179 -------------------------AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 233 (317)
T ss_dssp -------------------------EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEE
T ss_pred -------------------------EEEECCCCCCEEEEEEECCCCCEEECCCCCEEEEECCCCCEEEECCCCCEEEEEE
T ss_conf -------------------------7882477873379986325641110345630343025886147516997899988
Q ss_pred CCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEE--------ECCCCCEEEEECCCCE
Q ss_conf 99995589712899883999994899948999947990999958999238998600--------0269999999908981
Q 000270 569 AADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS--------RFRDGASIILSDDVGQ 640 (1749)
Q Consensus 569 l~tgkli~tL~gHs~~VtsIafSP~d~rlLvSas~DGtIrIWDi~tG~~l~tl~~~--------~fsDG~~LAsgs~DG~ 640 (1749)
..+++++.++.+|...|.+++|+| ++.+|++++.||.|++||+.+++++.++..+ +.+++.+|++++.||.
T Consensus 234 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~ 312 (317)
T d1vyhc1 234 VSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT 312 (317)
T ss_dssp TTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSE
T ss_pred CCCCCEEEEEECCCCCEEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCE
T ss_conf 899968899968899879999879-9999999979894999999999199999289998899999499999999928994
Q ss_pred EEEEE
Q ss_conf 99998
Q 000270 641 LYILN 645 (1749)
Q Consensus 641 I~Iwd 645 (1749)
|+||+
T Consensus 313 i~iWd 317 (317)
T d1vyhc1 313 VKVWE 317 (317)
T ss_dssp EEEEC
T ss_pred EEEEC
T ss_conf 99829
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.4e-38 Score=270.56 Aligned_cols=277 Identities=15% Similarity=0.169 Sum_probs=209.6
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCC
Q ss_conf 78985999996899679998389909999889995289960778855999952699962489963289909999768895
Q 000270 284 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ 363 (1749)
Q Consensus 284 Hs~~VtsLafSPDg~lLASGS~DGtIrIWDl~tgk~i~tL~gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~ 363 (1749)
+.+.+..++++|+++.|+.++ ++.|.+|++.++.....+.+|...|++++|+|++. +|++|+.||.|++|++....
T Consensus 16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~---~latg~~dg~i~iwd~~~~~ 91 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY---YCASGDVHGNVRIWDTTQTT 91 (311)
T ss_dssp CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSS---EEEEEETTSEEEEEESSSTT
T ss_pred CCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCC---EEECCCCCCEEEEEEEECCC
T ss_conf 788759999969989999996-99999999999966179747888889999948999---67225567367466310111
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECC--CCCEEEEECCCCCCCCCCCCCCCEEEECC
Q ss_conf 5452513799973348777888889999974279998479989999418--98099993899999899999851243127
Q 000270 364 FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS--DTLARVWNACKPNTDDSDQPNHEIDVLSG 441 (1749)
Q Consensus 364 ~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V~sIafSPDG~~LasGS~--DGtIrIWDl~t~~~~~s~q~~~~i~~l~g 441 (1749)
......+ ..|...|.+++|+|++.+|++++. +..+++|++.+ ......+.+
T Consensus 92 ~~~~~~~------------------~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~---------~~~~~~l~~ 144 (311)
T d1nr0a1 92 HILKTTI------------------PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT---------GTSNGNLTG 144 (311)
T ss_dssp CCEEEEE------------------ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT---------CCBCBCCCC
T ss_pred CCCCCCC------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------CCCCCCCCC
T ss_conf 1000013------------------4335754332333111000111122111111111111---------111111111
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89982799982787222233346877888875556555799899994898099993688888853222111124579999
Q 000270 442 HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPP 521 (1749)
Q Consensus 442 H~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~ 521 (1749)
|...|.+++|+|++ ...|++++.||.|++||+++.+
T Consensus 145 h~~~v~~v~~~~~~-------------------------~~~l~sgs~d~~i~i~d~~~~~------------------- 180 (311)
T d1nr0a1 145 QARAMNSVDFKPSR-------------------------PFRIISGSDDNTVAIFEGPPFK------------------- 180 (311)
T ss_dssp CSSCEEEEEECSSS-------------------------SCEEEEEETTSCEEEEETTTBE-------------------
T ss_pred CCCCCCCCCCCCCC-------------------------EEEECCCCCCCCCCCCCCCCCC-------------------
T ss_conf 11111111112111-------------------------0120001122111111111111-------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC-------CCCCCEEEEEECCCC
Q ss_conf 9999999999951126999980199985799899999679829999899995589712-------899883999994899
Q 000270 522 PMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT-------GHTESTYVLDVHPFN 594 (1749)
Q Consensus 522 ~~~~~~~~g~~i~~l~~h~~~VtsIafSPDG~~LASgs~DGtI~IWDl~tgkli~tL~-------gHs~~VtsIafSP~d 594 (1749)
.......|...|++++|+|++++|++++.|+.|++|+..++..+..+. +|.+.|++++|+| +
T Consensus 181 ----------~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~ 249 (311)
T d1nr0a1 181 ----------FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-D 249 (311)
T ss_dssp ----------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-T
T ss_pred ----------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-C
T ss_conf ----------11111111111111234764221211111111100012446411222111111100246532102478-8
Q ss_pred CCEEEEEECCCCEEEEECCCCCEEEEEEEEEC---------CCCCEEEEECCCCEEEEEEC
Q ss_conf 94899994799099995899923899860002---------69999999908981999988
Q 000270 595 PRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF---------RDGASIILSDDVGQLYILNT 646 (1749)
Q Consensus 595 ~rlLvSas~DGtIrIWDi~tG~~l~tl~~~~f---------sDG~~LAsgs~DG~I~Iwdl 646 (1749)
+.+|++++.||.|+|||+.++++++++..+.. .++..|++++.||.|.+|+.
T Consensus 250 ~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~ 310 (311)
T d1nr0a1 250 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310 (311)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEET
T ss_pred CCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCEEEEEECCCEEEEEEC
T ss_conf 9999999379969999999996999997999863329999951999999989997999958
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.1e-38 Score=272.70 Aligned_cols=290 Identities=16% Similarity=0.160 Sum_probs=228.6
Q ss_pred CCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEC-CCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 40379970689877999997999999997087489999778980899971-67898599999689967999838990999
Q 000270 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVSSNNALVASASNDCIIRV 311 (1749)
Q Consensus 233 ~~~i~tL~GH~~~VtsIaFSpDG~~LATGS~DGtIkIWDl~Tg~~i~tL~-gHs~~VtsLafSPDg~lLASGS~DGtIrI 311 (1749)
+...+.+.||...|+|++|+|+|++||||+.||+|++||+.+++.+..+. +|...|++++|+|++.++ +++.|+.+++
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~-~~~~d~~v~~ 80 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF-TVSWDDHLKV 80 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE-EEETTTEEEE
T ss_pred CCCCEECCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCEEE-CCCCEEEEEE
T ss_conf 861368488887828999979999999990899299999999968899837887748998840331121-0231026887
Q ss_pred EECCCCC---EEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 9889995---2899607788559999526999624899632899099997688955452513799973348777888889
Q 000270 312 WRLPDGL---PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 388 (1749)
Q Consensus 312 WDl~tgk---~i~tL~gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~ 388 (1749)
|++.... .......+...+.+++|++++. .+++ +.++.+.+|+..... ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~---~~~~-~~~~~i~~~~~~~~~---~~-------------------- 133 (299)
T d1nr0a2 81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGD---IAVA-ACYKHIAIYSHGKLT---EV-------------------- 133 (299)
T ss_dssp ECSSSSSSCTTSCCEEECSSCEEEEEECTTSS---CEEE-EESSEEEEEETTEEE---EE--------------------
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCC-CCCCCCCCCCCCCCC---CC--------------------
T ss_conf 31677620111000111134432100112211---1112-222222111111111---10--------------------
Q ss_pred CCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99997427999847998999941898099993899999899999851243127899827999827872222333468778
Q 000270 389 GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 468 (1749)
Q Consensus 389 ~~h~~~V~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~ 468 (1749)
.....+.+++|+|++.+|++|+.|+.|++|++.+.. ........|...|.+++|++++
T Consensus 134 -~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~--------~~~~~~~~~~~~i~~~~~~~~~------------- 191 (299)
T d1nr0a2 134 -PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS--------VSEVKTIVHPAEITSVAFSNNG------------- 191 (299)
T ss_dssp -ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE--------EEEEEEEECSSCEEEEEECTTS-------------
T ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCCCC-------------
T ss_conf -111123322111111111111111111111111111--------1111111111111111111111-------------
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 88875556555799899994898099993688888853222111124579999999999999995112699998019998
Q 000270 469 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 548 (1749)
Q Consensus 469 ~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIaf 548 (1749)
.+|++++.||.|++|++.++... .....+..|...|++++|
T Consensus 192 -------------~~l~~~~~d~~i~~~~~~~~~~~--------------------------~~~~~~~~h~~~v~~l~~ 232 (299)
T d1nr0a2 192 -------------AFLVATDQSRKVIPYSVANNFEL--------------------------AHTNSWTFHTAKVACVSW 232 (299)
T ss_dssp -------------SEEEEEETTSCEEEEEGGGTTEE--------------------------SCCCCCCCCSSCEEEEEE
T ss_pred -------------CCCCCCCCCCCCCCCCCCCCCCC--------------------------CCCCCCCCCCCCCCCCCC
T ss_conf -------------11111111111111111111111--------------------------111111111111111124
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEE--EECC-CCCCEEEEEECCCCCCEEEEEECCCCEEEEECC
Q ss_conf 5799899999679829999899995589--7128-998839999948999489999479909999589
Q 000270 549 SLDNRFVLAAIMDCRICVWNAADGSLVH--SLTG-HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1749)
Q Consensus 549 SPDG~~LASgs~DGtI~IWDl~tgkli~--tL~g-Hs~~VtsIafSP~d~rlLvSas~DGtIrIWDi~ 613 (1749)
+|++.+|++|+.|+.|++||+.++.... .... +...|.++.|.+ +.+|++++.|+.|++||+.
T Consensus 233 s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 233 SPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN--ETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp CTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEE--TTEEEEEETTSCEEEEECC
T ss_pred CCCCCCEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEECC--CCEEEEEECCCEEEEEECC
T ss_conf 66645138882899799998999973148983489889689999779--8999999289979999444
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.9e-38 Score=266.99 Aligned_cols=317 Identities=24% Similarity=0.427 Sum_probs=255.2
Q ss_pred CCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEE
Q ss_conf 34403799706898779999979999999970874899997789808999716789859999968996799983899099
Q 000270 231 QKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIR 310 (1749)
Q Consensus 231 ~t~~~i~tL~GH~~~VtsIaFSpDG~~LATGS~DGtIkIWDl~Tg~~i~tL~gHs~~VtsLafSPDg~lLASGS~DGtIr 310 (1749)
.+++..+.|+||.+.|.+ +++++|++||||+.||+|+|||+.++++++++.+|...|.+++|+++ +|++++.|+.++
T Consensus 4 ~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~ 80 (342)
T d2ovrb2 4 GELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLK 80 (342)
T ss_dssp SCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEE
T ss_pred CCCCCCEEECCCCCCEEE-EEEECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC--CCCCCEECCCCC
T ss_conf 988758898886875099-99978999999918990999989999799999488999899994798--632100000111
Q ss_pred EEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99889995289960778855999952699962489963289909999768895545251379997334877788888999
Q 000270 311 VWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGP 390 (1749)
Q Consensus 311 IWDl~tgk~i~tL~gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~ 390 (1749)
+|+............+...+....+.+. .++.+..|+.+.+|+..++.....+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~d~~i~~~~~~~~~~~~~~~~-------------------- 135 (342)
T d2ovrb2 81 VWNAETGECIHTLYGHTSTVRCMHLHEK-----RVVSGSRDATLRVWDIETGQCLHVLMG-------------------- 135 (342)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEETT-----EEEEEETTSEEEEEESSSCCEEEEEEC--------------------
T ss_pred CCCCCCCCCEECCCCCCEEEEEEECCCC-----CCCCCCCCEEEEEEECCCCCCEEEEEC--------------------
T ss_conf 1111100000001233304765202465-----221234440378740355630011100--------------------
Q ss_pred CCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 99742799984799899994189809999389999989999985124312789982799982787222233346877888
Q 000270 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDS 470 (1749)
Q Consensus 391 h~~~V~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~ 470 (1749)
.......+......+++++.++.|++|+... ...+..+.+|...+..+.+.+
T Consensus 136 --~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~---------~~~~~~~~~~~~~~~~~~~~~----------------- 187 (342)
T d2ovrb2 136 --HVAAVRCVQYDGRRVVSGAYDFMVKVWDPET---------ETCLHTLQGHTNRVYSLQFDG----------------- 187 (342)
T ss_dssp --CSSCEEEEEECSSCEEEEETTSCEEEEEGGG---------TEEEEEECCCSSCEEEEEECS-----------------
T ss_pred --CCCCCEEECCCCCEEEEECCCCEEEEEECCC---------CEEEEEECCCCCCCCCCCCCC-----------------
T ss_conf --1111000001333024335898699952523---------436678727544421006899-----------------
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 87555655579989999489809999368888885322211112457999999999999999511269999801999857
Q 000270 471 TPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL 550 (1749)
Q Consensus 471 ~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIafSP 550 (1749)
..+++++.||.|++|++...+ .+..+..|...+.+++++
T Consensus 188 -----------~~l~s~~~dg~i~~~d~~~~~-----------------------------~~~~~~~~~~~v~~~~~~- 226 (342)
T d2ovrb2 188 -----------IHVVSGSLDTSIRVWDVETGN-----------------------------CIHTLTGHQSLTSGMELK- 226 (342)
T ss_dssp -----------SEEEEEETTSCEEEEETTTCC-----------------------------EEEEECCCCSCEEEEEEE-
T ss_pred -----------CEEEEEECCCEEEEEECCCCE-----------------------------EEEEECCCCCCEEEEECC-
T ss_conf -----------999999589939995255653-----------------------------656741665320577068-
Q ss_pred CCCEEEEEECCCEEEEEECCCCCEEEEECC---CCCCEEEEEECCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEE---
Q ss_conf 998999996798299998999955897128---99883999994899948999947990999958999238998600---
Q 000270 551 DNRFVLAAIMDCRICVWNAADGSLVHSLTG---HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS--- 624 (1749)
Q Consensus 551 DG~~LASgs~DGtI~IWDl~tgkli~tL~g---Hs~~VtsIafSP~d~rlLvSas~DGtIrIWDi~tG~~l~tl~~~--- 624 (1749)
+++|++++.|+.|++|+....+....+.+ |...+.++.+++ .++++++.||.|++||+.+|++++.+...
T Consensus 227 -~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~ 302 (342)
T d2ovrb2 227 -DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESG 302 (342)
T ss_dssp -TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTG
T ss_pred -CCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEECEEECCCCC---CEEEEECCCCEEEEEECCCCCEEEEEECCCCC
T ss_conf -99999974898899986554422111221000110100001379---84499908998999999999798998623478
Q ss_pred ----------ECCCCCEEEEECCCC----EEEEEECCC
Q ss_conf ----------026999999990898----199998899
Q 000270 625 ----------RFRDGASIILSDDVG----QLYILNTGQ 648 (1749)
Q Consensus 625 ----------~fsDG~~LAsgs~DG----~I~Iwdl~s 648 (1749)
+.+++.+||+|+.|| .|++||+..
T Consensus 303 ~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 303 GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp GGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEECCC
T ss_conf 98897899998799989999968999704899993899
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1e-38 Score=273.07 Aligned_cols=334 Identities=20% Similarity=0.316 Sum_probs=245.2
Q ss_pred EEEEECCCCCCE-EEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 379970689877-9999979999999970874899997789808999716789859999968996799983899099998
Q 000270 235 NIKRVRGHRNAV-YCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1749)
Q Consensus 235 ~i~tL~GH~~~V-tsIaFSpDG~~LATGS~DGtIkIWDl~Tg~~i~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrIWD 313 (1749)
...+|+||...| +|++| ++++||||+.||+|+|||+.+++++.++.+|.+.|++++|+++ .+|++|+.|+.|++|+
T Consensus 4 ~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~ 80 (355)
T d1nexb2 4 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80 (355)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred CCEEECCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC-CEEEEEECCCCCCCCC
T ss_conf 758889837886999998--8999999918990999989999399999789998899998699-9999996452443211
Q ss_pred CCCCCEEEEECCCCC--CEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCCCCC---CCCCCCC
Q ss_conf 899952899607788--55999952699962489963289909999768895545251379997334877---7888889
Q 000270 314 LPDGLPISVLRGHTA--AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRN---MAPSSSA 388 (1749)
Q Consensus 314 l~tgk~i~tL~gHs~--~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~---~~~~~s~ 388 (1749)
+.............. ......+.+++. .+++++.|+.|++|++...................... .......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (355)
T d1nexb2 81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIK---YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 157 (355)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEEEETTEE---EEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC---EEEEECCCCCEEEEECCCCCEECCCCCCCEECCCEECCCCCCCEEEEE
T ss_conf 11111111110011111111111112322---045543888689998567730012465200010000011234012101
Q ss_pred CCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99997427999847998999941898099993899999899999851243127899827999827872222333468778
Q 000270 389 GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 468 (1749)
Q Consensus 389 ~~h~~~V~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~ 468 (1749)
..+... ...+.+++..++++..|+.|++|++.+ ...+....++...+.++.|++.+
T Consensus 158 ~~~~~~--v~~~~~~~~~~~~~~~d~~i~~~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~------------- 213 (355)
T d1nexb2 158 RGHMAS--VRTVSGHGNIVVSGSYDNTLIVWDVAQ---------MKCLYILSGHTDRIYSTIYDHER------------- 213 (355)
T ss_dssp ECCSSC--EEEEEEETTEEEEEETTSCEEEEETTT---------TEEEEEECCCSSCEEEEEEETTT-------------
T ss_pred EECCCC--CCCCCCCCCEEEEECCCCEEEEEECCC---------CCCEEEEECCCCCCCCCCCCCCC-------------
T ss_conf 100222--100002563344211442044430131---------10001100012332111111210-------------
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 88875556555799899994898099993688888853222111124579999999999999995112699998019998
Q 000270 469 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 548 (1749)
Q Consensus 469 ~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIaf 548 (1749)
..+++++.||.|++|++.++. ....+.+|...|++++|
T Consensus 214 -------------~~~~~~~~d~~i~i~d~~~~~-----------------------------~~~~~~~h~~~v~~~~~ 251 (355)
T d1nexb2 214 -------------KRCISASMDTTIRIWDLENGE-----------------------------LMYTLQGHTALVGLLRL 251 (355)
T ss_dssp -------------TEEEEEETTSCEEEEETTTCC-----------------------------EEEEECCCSSCCCEEEE
T ss_pred -------------EEEECCCCCCEEEEEECCCCC-----------------------------CCCCCCCCCCCCCCCCC
T ss_conf -------------021012456368763012211-----------------------------11111111111111123
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCCCCEEEEEE-EE---
Q ss_conf 57998999996798299998999955897128998839999948999489999479909999589992389986-00---
Q 000270 549 SLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE-IS--- 624 (1749)
Q Consensus 549 SPDG~~LASgs~DGtI~IWDl~tgkli~tL~gHs~~VtsIafSP~d~rlLvSas~DGtIrIWDi~tG~~l~tl~-~~--- 624 (1749)
+ +++|++++.||.|++||+.++... +..|...+..+.+.+.++.+++++ .|+.|++||+.+|+++.... .+
T Consensus 252 ~--~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~ 326 (355)
T d1nexb2 252 S--DKFLVSAAADGSIRGWDANDYSRK--FSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQ 326 (355)
T ss_dssp C--SSEEEEECTTSEEEEEETTTCCEE--EEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSE
T ss_pred C--CCEEEEEECCCCCCCCCCCCCCEE--CCCCCCCCEEEEEECCCCCEEEEE-ECCEEEEEECCCCCEEEEEECCCCCC
T ss_conf 2--100333201111111111111100--012468822999984999899998-09979999999997988884589998
Q ss_pred ----ECCCCCEEEEECCCCEEEEEE
Q ss_conf ----026999999990898199998
Q 000270 625 ----RFRDGASIILSDDVGQLYILN 645 (1749)
Q Consensus 625 ----~fsDG~~LAsgs~DG~I~Iwd 645 (1749)
.++...++++++.||.++||-
T Consensus 327 V~~v~~~~~~~~~~~s~dg~~~l~~ 351 (355)
T d1nexb2 327 IWSVNFKGKTLVAAVEKDGQSFLEI 351 (355)
T ss_dssp EEEEEEETTEEEEEEESSSCEEEEE
T ss_pred EEEEEECCCEEEEEEECCCCEEEEE
T ss_conf 9999983991999998989099999
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2e-37 Score=264.19 Aligned_cols=266 Identities=14% Similarity=0.179 Sum_probs=181.8
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC--EEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCC
Q ss_conf 78985999996899679998389909999889995--2899607788559999526999624899632899099997688
Q 000270 284 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL--PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY 361 (1749)
Q Consensus 284 Hs~~VtsLafSPDg~lLASGS~DGtIrIWDl~tgk--~i~tL~gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~t 361 (1749)
...+|+|++|+|++++||+|+.|+.|+||++.+++ ++..+.+|.+.|++++|+|+++ +|++++.|+.|++|++..
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~---~l~s~s~D~~i~vWd~~~ 82 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN---RIVTCGTDRNAYVWTLKG 82 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTT---EEEEEETTSCEEEEEEET
T ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCC---EEEEEECCCEEEEEEECC
T ss_conf 99883899998999999999488989999888997899999558899888999979999---999997999399986203
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEECC
Q ss_conf 95545251379997334877788888999997427999847998999941898099993899999899999851243127
Q 000270 362 SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG 441 (1749)
Q Consensus 362 g~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l~g 441 (1749)
+.....+.. ..+...|.+++|+|++..|++++.|+.|++|++..... ..........
T Consensus 83 ~~~~~~~~~------------------~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~-----~~~~~~~~~~ 139 (371)
T d1k8kc_ 83 RTWKPTLVI------------------LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND-----WWVCKHIKKP 139 (371)
T ss_dssp TEEEEEEEC------------------CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT-----EEEEEEECTT
T ss_pred CCCCCCCCC------------------CCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCC-----CCCCCCCCCC
T ss_conf 321100122------------------32211000111111121100000257630254420334-----3311100101
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89982799982787222233346877888875556555799899994898099993688888853222111124579999
Q 000270 442 HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPP 521 (1749)
Q Consensus 442 H~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~ 521 (1749)
|...|.+++|+|++ .+|++++.||.+++|+............ .
T Consensus 140 ~~~~v~~v~~~p~~--------------------------~~l~s~s~D~~v~v~~~~~~~~~~~~~~-----------~ 182 (371)
T d1k8kc_ 140 IRSTVLSLDWHPNS--------------------------VLLAAGSCDFKCRIFSAYIKEVEERPAP-----------T 182 (371)
T ss_dssp CCSCEEEEEECTTS--------------------------SEEEEEETTSCEEEEECCCTTTSCCCCC-----------B
T ss_pred CCCCCCCCCCCCCC--------------------------CCEECCCCCCEEEEEEECCCCCCCCCCC-----------C
T ss_conf 11222111111111--------------------------1100013476799984015764310012-----------2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEE
Q ss_conf 99999999999511269999801999857998999996798299998999955897128998839999948999489999
Q 000270 522 PMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 601 (1749)
Q Consensus 522 ~~~~~~~~g~~i~~l~~h~~~VtsIafSPDG~~LASgs~DGtI~IWDl~tgkli~tL~gHs~~VtsIafSP~d~rlLvSa 601 (1749)
........+........|...|.+++|+|++++|++++.|+.|++||+.++..+..+.+|..+|.+++|+| ++.+|++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~-d~~~la~- 260 (371)
T d1k8kc_ 183 PWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT-ESSLVAA- 260 (371)
T ss_dssp TTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEE-TTEEEEE-
T ss_pred CCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCEEEEECC-CCCEEEE-
T ss_conf 11111111011244047667478987512332100001478605886410121000001466520365469-9979999-
Q ss_pred ECCCCEEEEECCC
Q ss_conf 4799099995899
Q 000270 602 GYDGKTIVWDIWE 614 (1749)
Q Consensus 602 s~DGtIrIWDi~t 614 (1749)
+.|+.+++|....
T Consensus 261 g~d~~~~~~~~~~ 273 (371)
T d1k8kc_ 261 GHDCFPVLFTYDS 273 (371)
T ss_dssp ETTSSCEEEEEET
T ss_pred ECCCCEEEEEEEC
T ss_conf 8199267877608
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.3e-35 Score=251.93 Aligned_cols=286 Identities=18% Similarity=0.240 Sum_probs=237.0
Q ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCE
Q ss_conf 80899971678985999996899679998389909999889995289960778855999952699962489963289909
Q 000270 275 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354 (1749)
Q Consensus 275 g~~i~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrIWDl~tgk~i~tL~gHs~~VtsIaFSPdg~~~~~LvSgS~DGtI 354 (1749)
.+..++|+||.+.|++++|+|++.+||+|+.||+|+|||+.+++.+..+.+|...|.+++|+|++. ++++++.|+.+
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~---~l~~~~~d~~i 121 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN---YVACGGLDNIC 121 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSS---EEEEEETTCCE
T ss_pred EEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCE---EEEEECCCCEE
T ss_conf 065279888789888999989999999997899555631021025799724653377567601211---44310133201
Q ss_pred EEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 99976889554525137999733487778888899999742799984799899994189809999389999989999985
Q 000270 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNH 434 (1749)
Q Consensus 355 rIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q~~~ 434 (1749)
.+|+............ ....+.....+.... .+..++....+.....+.... ..
T Consensus 122 ~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------~~ 175 (340)
T d1tbga_ 122 SIYNLKTREGNVRVSR----------------ELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIET---------GQ 175 (340)
T ss_dssp EEEESSSSCSCCCEEE----------------EECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTT---------TE
T ss_pred ECCCCCCCCCCCCCCE----------------ECCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCC---------CC
T ss_conf 0133222212221110----------------013542110111111-111111112445432001232---------21
Q ss_pred CEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 12431278998279998278722223334687788887555655579989999489809999368888885322211112
Q 000270 435 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 514 (1749)
Q Consensus 435 ~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~ 514 (1749)
.......+...+....+.+.. ..+++++.|+.|++||+.+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~d~~v~i~d~~~~~------------ 217 (340)
T d1tbga_ 176 QTTTFTGHTGDVMSLSLAPDT--------------------------RLFVSGACDASAKLWDVREGM------------ 217 (340)
T ss_dssp EEEEEECCSSCEEEEEECTTS--------------------------SEEEEEETTTEEEEEETTTTE------------
T ss_pred CCCCCCCCCEEEEEECCCCCC--------------------------CEEEEEECCCEEEEEECCCCC------------
T ss_conf 111123310157630012442--------------------------126876057369999999994------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC--CCCCCEEEEEECC
Q ss_conf 45799999999999999951126999980199985799899999679829999899995589712--8998839999948
Q 000270 515 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT--GHTESTYVLDVHP 592 (1749)
Q Consensus 515 ~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIafSPDG~~LASgs~DGtI~IWDl~tgkli~tL~--gHs~~VtsIafSP 592 (1749)
+...+.+|...|++++|+|++.+|++|+.|+.|++|++.....+..+. .+...|.+++|+|
T Consensus 218 -----------------~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 280 (340)
T d1tbga_ 218 -----------------CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK 280 (340)
T ss_dssp -----------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECS
T ss_pred -----------------EEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf -----------------889995788985899997998999999699969997521221111111224457458999989
Q ss_pred CCCCEEEEEECCCCEEEEECCCCCEEEEEEEE--------ECCCCCEEEEECCCCEEEEEE
Q ss_conf 99948999947990999958999238998600--------026999999990898199998
Q 000270 593 FNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS--------RFRDGASIILSDDVGQLYILN 645 (1749)
Q Consensus 593 ~d~rlLvSas~DGtIrIWDi~tG~~l~tl~~~--------~fsDG~~LAsgs~DG~I~Iwd 645 (1749)
++.+|++++.||.|++||+.+++++.++.+| +.+||.+||+++.||.|+||+
T Consensus 281 -~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 281 -SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp -SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -CCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEECCCCEEEEEC
T ss_conf -999999997979899999999939899848999789999908999999990699799859
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.5e-36 Score=258.25 Aligned_cols=282 Identities=17% Similarity=0.208 Sum_probs=226.4
Q ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC-CCCCCEEEEEECCCCCCCEEEEEECCCCC
Q ss_conf 80899971678985999996899679998389909999889995289960-77885599995269996248996328990
Q 000270 275 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGT 353 (1749)
Q Consensus 275 g~~i~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrIWDl~tgk~i~tL~-gHs~~VtsIaFSPdg~~~~~LvSgS~DGt 353 (1749)
|...+.+.||...|++++|+|++++|++|+.||.|++||+.+++++..+. +|...|++++|+|++. +++++.|+.
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~----~~~~~~d~~ 77 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD----LFTVSWDDH 77 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC----EEEEETTTE
T ss_pred CCCCEECCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCE----EECCCCEEE
T ss_conf 8613684888878289999799999999908992999999999688998378877489988403311----210231026
Q ss_pred EEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 99997688955452513799973348777888889999974279998479989999418980999938999998999998
Q 000270 354 CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN 433 (1749)
Q Consensus 354 IrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q~~ 433 (1749)
+++|+.......... .....+...+.+++|++++.++++++ ++.+.+|+..
T Consensus 78 v~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~----------- 128 (299)
T d1nr0a2 78 LKVVPAGGSGVDSSK-----------------AVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHG----------- 128 (299)
T ss_dssp EEEECSSSSSSCTTS-----------------CCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETT-----------
T ss_pred EEEECCCCCCCCCCC-----------------CCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC-----------
T ss_conf 887316776201110-----------------00111134432100112211111222-2222111111-----------
Q ss_pred CCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 51243127899827999827872222333468778888755565557998999948980999936888888532221111
Q 000270 434 HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQA 513 (1749)
Q Consensus 434 ~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~ 513 (1749)
..... .....+.+++|++++ .+|++++.||.|++|++.+....
T Consensus 129 ~~~~~--~~~~~~~~~~~s~~~--------------------------~~l~~g~~dg~i~~~d~~~~~~~--------- 171 (299)
T d1nr0a2 129 KLTEV--PISYNSSCVALSNDK--------------------------QFVAVGGQDSKVHVYKLSGASVS--------- 171 (299)
T ss_dssp EEEEE--ECSSCEEEEEECTTS--------------------------CEEEEEETTSEEEEEEEETTEEE---------
T ss_pred CCCCC--CCCCCCCCCCCCCCC--------------------------CCCCCCCCCCCCCCCCCCCCCCC---------
T ss_conf 11110--111123322111111--------------------------11111111111111111111111---------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE---EECCCCCCEEEEEE
Q ss_conf 245799999999999999951126999980199985799899999679829999899995589---71289988399999
Q 000270 514 YHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVH---SLTGHTESTYVLDV 590 (1749)
Q Consensus 514 ~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIafSPDG~~LASgs~DGtI~IWDl~tgkli~---tL~gHs~~VtsIaf 590 (1749)
......|...|++++|+|++.+|++++.|+.|++||+.++.... .+.+|...|++++|
T Consensus 172 -------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 232 (299)
T d1nr0a2 172 -------------------EVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSW 232 (299)
T ss_dssp -------------------EEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEE
T ss_pred -------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf -------------------1111111111111111111111111111111111111111111111111111111111124
Q ss_pred CCCCCCEEEEEECCCCEEEEECCCCCEEEEEEE----------EECCCCCEEEEECCCCEEEEEEC
Q ss_conf 489994899994799099995899923899860----------00269999999908981999988
Q 000270 591 HPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEI----------SRFRDGASIILSDDVGQLYILNT 646 (1749)
Q Consensus 591 SP~d~rlLvSas~DGtIrIWDi~tG~~l~tl~~----------~~fsDG~~LAsgs~DG~I~Iwdl 646 (1749)
+| ++.+|++++.||.|++||+.++.....+.. -.++++.+|++++.||.|++|++
T Consensus 233 s~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl 297 (299)
T d1nr0a2 233 SP-DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297 (299)
T ss_dssp CT-TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred CC-CCCCEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEECCCCEEEEEECCCEEEEEEC
T ss_conf 66-645138882899799998999973148983489889689999779899999928997999944
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.9e-34 Score=241.93 Aligned_cols=313 Identities=22% Similarity=0.289 Sum_probs=223.3
Q ss_pred EEEECCCCCCE-EEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCEEE
Q ss_conf 99971678985-99999689967999838990999988999528996077885599995269996248996328990999
Q 000270 278 LASCRGHEGDI-TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356 (1749)
Q Consensus 278 i~tL~gHs~~V-tsLafSPDg~lLASGS~DGtIrIWDl~tgk~i~tL~gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIrI 356 (1749)
..+|+||...| +|++| ++++||+|+.||+|+|||+.+++++..+.+|.+.|++++|++++ +|++++.|+.|++
T Consensus 5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~----~l~s~s~D~~i~i 78 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG----ILVSGSTDRTVRV 78 (355)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT----EEEEEETTCCEEE
T ss_pred CEEECCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCC----EEEEEECCCCCCC
T ss_conf 58889837886999998--89999999189909999899993999997899988999986999----9999964524432
Q ss_pred EECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCC-----
Q ss_conf 976889554525137999733487778888899999742799984799899994189809999389999989999-----
Q 000270 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQ----- 431 (1749)
Q Consensus 357 WDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q----- 431 (1749)
|++........... .........+.+.+++..+++++.|+.|++|++.+........
T Consensus 79 w~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~ 140 (355)
T d1nexb2 79 WDIKKGCCTHVFEG------------------HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 140 (355)
T ss_dssp EETTTTEEEEEECC------------------CSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CC
T ss_pred CCCCCCCCCCCCCC------------------CCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECCCCCCCEE
T ss_conf 11111111111100------------------111111111111123220455438886899985677300124652000
Q ss_pred ---------CCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCC
Q ss_conf ---------98512431278998279998278722223334687788887555655579989999489809999368888
Q 000270 432 ---------PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 502 (1749)
Q Consensus 432 ---------~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k 502 (1749)
..........|...+..... .++.++++..|+.+++|++.+.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----------------------------~~~~~~~~~~d~~i~~~d~~~~~ 192 (355)
T d1nexb2 141 PLVFHTPEENPYFVGVLRGHMASVRTVSG----------------------------HGNIVVSGSYDNTLIVWDVAQMK 192 (355)
T ss_dssp CEEESCTTTCTTEEEEEECCSSCEEEEEE----------------------------ETTEEEEEETTSCEEEEETTTTE
T ss_pred CCCEECCCCCCCEEEEEEECCCCCCCCCC----------------------------CCCEEEEECCCCEEEEEECCCCC
T ss_conf 10000011234012101100222100002----------------------------56334421144204443013110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCC
Q ss_conf 88532221111245799999999999999951126999980199985799899999679829999899995589712899
Q 000270 503 SHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHT 582 (1749)
Q Consensus 503 ~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIafSPDG~~LASgs~DGtI~IWDl~tgkli~tL~gHs 582 (1749)
......++...+.++.|++++.++++++.|+.|++|+..++.++..+.+|.
T Consensus 193 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~ 243 (355)
T d1nexb2 193 -----------------------------CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHT 243 (355)
T ss_dssp -----------------------------EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred -----------------------------CEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf -----------------------------001100012332111111210021012456368763012211111111111
Q ss_pred CCEEEEEECCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEE------ECC-CCCEEEEECCCCEEEEEECCCCCCCCCC
Q ss_conf 883999994899948999947990999958999238998600------026-9999999908981999988998422354
Q 000270 583 ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS------RFR-DGASIILSDDVGQLYILNTGQGESQKDA 655 (1749)
Q Consensus 583 ~~VtsIafSP~d~rlLvSas~DGtIrIWDi~tG~~l~tl~~~------~fs-DG~~LAsgs~DG~I~Iwdl~sGe~~k~~ 655 (1749)
..|.+++|++ .+|++++.||.|++||+.++.....+... .++ ++.+|+++ .||.|+||++.+|+.+...
T Consensus 244 ~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~ 319 (355)
T d1nexb2 244 ALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHAN 319 (355)
T ss_dssp SCCCEEEECS---SEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSC
T ss_pred CCCCCCCCCC---CEEEEEECCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCEEEEE-ECCEEEEEECCCCCEEEEE
T ss_conf 1111112321---00333201111111111111100012468822999984999899998-0997999999999798888
Q ss_pred -------CCEEEECCCCCCEEECCCCC
Q ss_conf -------21023318975446827995
Q 000270 656 -------KYDQFFLGDYRPLVQDTYGN 675 (1749)
Q Consensus 656 -------~~~~fFs~D~~~Lv~d~~G~ 675 (1749)
...+.|+++...+....+|.
T Consensus 320 ~~~~~~~V~~v~~~~~~~~~~~s~dg~ 346 (355)
T d1nexb2 320 ILKDADQIWSVNFKGKTLVAAVEKDGQ 346 (355)
T ss_dssp TTTTCSEEEEEEEETTEEEEEEESSSC
T ss_pred ECCCCCCEEEEEECCCEEEEEEECCCC
T ss_conf 458999899999839919999989890
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.5e-34 Score=244.78 Aligned_cols=285 Identities=14% Similarity=0.119 Sum_probs=200.0
Q ss_pred CEEEEEECCCCCEEEEEECCC-EEEEEECCCC--EEEEEECCCC-CCEEEEEECC--CCCEEEEEECCCEEEEEECCCCC
Q ss_conf 779999979999999970874-8999977898--0899971678-9859999968--99679998389909999889995
Q 000270 245 AVYCAIFDRSGRYVITGSDDR-LVKIWSMETA--YCLASCRGHE-GDITDLAVSS--NNALVASASNDCIIRVWRLPDGL 318 (1749)
Q Consensus 245 ~VtsIaFSpDG~~LATGS~DG-tIkIWDl~Tg--~~i~tL~gHs-~~VtsLafSP--Dg~lLASGS~DGtIrIWDl~tgk 318 (1749)
.+++++|+|+|..|+.++.+. .|+.|+.... ..+..+.+|. ..|++++|+| ++.+||+|+.||+|+||++..+.
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~ 98 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK 98 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred CEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECCCC
T ss_conf 84799998997999999699879999768888765028990789998899998117999799999489977985405886
Q ss_pred EE--------EEECCCCCCEEEEEECCCCCCCEEEEEE--CCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 28--------9960778855999952699962489963--2899099997688955452513799973348777888889
Q 000270 319 PI--------SVLRGHTAAVTAIAFSPRPGSVYQLLSS--SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 388 (1749)
Q Consensus 319 ~i--------~tL~gHs~~VtsIaFSPdg~~~~~LvSg--S~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~ 388 (1749)
.. ..+..|.+.|.+++|++++. +++++ +.++.+.+|+..++..+..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 155 (325)
T d1pgua1 99 ESNSVEVNVKSEFQVLAGPISDISWDFEGR---RLCVVGEGRDNFGVFISWDSGNSLGEV-------------------- 155 (325)
T ss_dssp GGTEEEEEEEEEEECCSSCEEEEEECTTSS---EEEEEECCSSCSEEEEETTTCCEEEEC--------------------
T ss_pred CEEEEECCCCCCCCCCCCCEEEEEECCCCC---CCCEEECCCCCEEEEEEECCCCCCEEE--------------------
T ss_conf 215651002541136567377999899988---220100124404788850233110012--------------------
Q ss_pred CCCCCCEEEEEECCCCCE-EEEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 999974279998479989-9994189809999389999989999985124312789982799982787222233346877
Q 000270 389 GPQSHQIFCCAFNANGTV-FVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK 467 (1749)
Q Consensus 389 ~~h~~~V~sIafSPDG~~-LasGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~ 467 (1749)
..|...|.+++|+|++.. +++++.|+.|++|+....+ .........+|...|.+++|+|+.
T Consensus 156 ~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~------~~~~~~~~~~~~~~v~~v~~~pd~------------ 217 (325)
T d1pgua1 156 SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK------FSASDRTHHKQGSFVRDVEFSPDS------------ 217 (325)
T ss_dssp CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE------EEEEECSSSCTTCCEEEEEECSTT------------
T ss_pred EECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCC------CCEECCCCCCCCCCCEEEEECCCC------------
T ss_conf 00123432111123432068886211122111122110------000000015777752776303453------------
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 88887555655579989999489809999368888885322211112457999999999999999511269999801999
Q 000270 468 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 547 (1749)
Q Consensus 468 ~~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIa 547 (1749)
+.+|++++.||.|++||+.+++. +..+.+|...+..+.
T Consensus 218 -------------~~~l~s~~~d~~i~iwd~~~~~~-----------------------------~~~l~~~~~~v~~~~ 255 (325)
T d1pgua1 218 -------------GEFVITVGSDRKISCFDGKSGEF-----------------------------LKYIEDDQEPVQGGI 255 (325)
T ss_dssp -------------CCEEEEEETTCCEEEEETTTCCE-----------------------------EEECCBTTBCCCSCE
T ss_pred -------------CEECCCCCCCCCEEEEEECCCCC-----------------------------CCCCCCCCCCCCCCE
T ss_conf -------------10000112332101343001222-----------------------------111111111111100
Q ss_pred EC---CCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCC--EEEEEECCCCCCEEEEEECCCCEEEEEC
Q ss_conf 85---79989999967982999989999558971289988--3999994899948999947990999958
Q 000270 548 WS---LDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTES--TYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1749)
Q Consensus 548 fS---PDG~~LASgs~DGtI~IWDl~tgkli~tL~gHs~~--VtsIafSP~d~rlLvSas~DGtIrIWDi 612 (1749)
|+ ++|++|++++.|+.|+|||+.+++++..+..|... +..+++.+.+..+|++++.||.|++||+
T Consensus 256 ~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 256 FALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred EEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEC
T ss_conf 0000368999999958993999999999788999954874067699999889999999979999999979
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.8e-34 Score=242.94 Aligned_cols=318 Identities=13% Similarity=0.057 Sum_probs=231.9
Q ss_pred CCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEE---EEEECCCCCCEEEEEECCC-CCEEEEEECCCE
Q ss_conf 403799706898779999979999999970874899997789808---9997167898599999689-967999838990
Q 000270 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC---LASCRGHEGDITDLAVSSN-NALVASASNDCI 308 (1749)
Q Consensus 233 ~~~i~tL~GH~~~VtsIaFSpDG~~LATGS~DGtIkIWDl~Tg~~---i~tL~gHs~~VtsLafSPD-g~lLASGS~DGt 308 (1749)
|+.++.+++|.+.|++|+|+|++++||+|+.||+|+|||+.++.. +....+|.++|++++|+++ +.+|++|+.|+.
T Consensus 1 ~~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~ 80 (342)
T d1yfqa_ 1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE 80 (342)
T ss_dssp CEEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred CCEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEECCCCCC
T ss_conf 97597688998978889995899999999799929999756998636898855899988999995899978998126531
Q ss_pred EEEEECCCCCEEEEECCCCCCE-EEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 9999889995289960778855-999952699962489963289909999768895545251379997334877788888
Q 000270 309 IRVWRLPDGLPISVLRGHTAAV-TAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSS 387 (1749)
Q Consensus 309 IrIWDl~tgk~i~tL~gHs~~V-tsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s 387 (1749)
|++|++..+........+...+ ....+.++.. .+++++.++.+++||++..............
T Consensus 81 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~------------- 144 (342)
T d1yfqa_ 81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDD---KLIAASWDGLIEVIDPRNYGDGVIAVKNLNS------------- 144 (342)
T ss_dssp EEEECSSSSSSEEECBSCCCCSCEEEEEEETTT---EEEEEETTSEEEEECHHHHTTBCEEEEESCS-------------
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCEEECCCCCCCEEEECCCCC-------------
T ss_conf 145420443200000111111111111111111---1111012221110202344433023000243-------------
Q ss_pred CCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 99999742799984799899994189809999389999989999985124312789982799982787222233346877
Q 000270 388 AGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK 467 (1749)
Q Consensus 388 ~~~h~~~V~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~ 467 (1749)
........++.+.+.+..+++++.|+.|++|++..... .........+...+.++.+.+..
T Consensus 145 -~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~------------ 205 (342)
T d1yfqa_ 145 -NNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED------DNGTIEESGLKYQIRDVALLPKE------------ 205 (342)
T ss_dssp -SSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTT------CCCEEEECSCSSCEEEEEECSGG------------
T ss_pred -CCCCCEEEEEEEECCCCCEEEECCCCCEEEEECCCCCC------CCEEEEECCCCCCEEEEEEECCC------------
T ss_conf -00120000010001687024651798478876056763------41112102542210146763699------------
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 88887555655579989999489809999368888885322211112457999999999999999511269999801999
Q 000270 468 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 547 (1749)
Q Consensus 468 ~~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIa 547 (1749)
+..+++++.||.+.+|+................. ..........|...+++++
T Consensus 206 -------------~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~v~~l~ 258 (342)
T d1yfqa_ 206 -------------QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR--------------CHRLNLKDTNLAYPVNSIE 258 (342)
T ss_dssp -------------GCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE--------------CCCCCTTCCSSCCCEEEEE
T ss_pred -------------CCEEEEECCCCEEEEEEECCCCCEEECCCCCEEE--------------EEEECCCCCCCCCCCEEEE
T ss_conf -------------9878865489959999805986401112351256--------------5553147776235431599
Q ss_pred ECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCC
Q ss_conf 8579989999967982999989999558971289988399999489994899994799099995899
Q 000270 548 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1749)
Q Consensus 548 fSPDG~~LASgs~DGtI~IWDl~tgkli~tL~gHs~~VtsIafSP~d~rlLvSas~DGtIrIWDi~t 614 (1749)
|+|++.+|++|+.||.|++||+.+++.+..+..+. .+..++|+| ++.++++++.|+.+++|....
T Consensus 259 ~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~-~~~~~~~s~-~~~~l~~a~sdd~~~~~~~~~ 323 (342)
T d1yfqa_ 259 FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIAC-SDNILCLATSDDTFKTNAAID 323 (342)
T ss_dssp ECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS-SSEEEEEEE-CSSEEEEEEECTHHHHCSSSC
T ss_pred ECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCC-CCEEEEEEE-CCCEEEEEECCCCEEEEEEEC
T ss_conf 66984479998799989999999894988705899-987999994-799999999199278830127
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-32 Score=230.88 Aligned_cols=280 Identities=21% Similarity=0.398 Sum_probs=223.6
Q ss_pred CCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 40379970689877999997999999997087489999778980899971678985999996899679998389909999
Q 000270 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1749)
Q Consensus 233 ~~~i~tL~GH~~~VtsIaFSpDG~~LATGS~DGtIkIWDl~Tg~~i~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrIW 312 (1749)
.+.++...+|...|+|++| +|++||||+.||+|+|||+.+++++.++.+|.+.|++++| ++++|++|+.|+.|++|
T Consensus 5 ~~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~ 80 (293)
T d1p22a2 5 LQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW 80 (293)
T ss_dssp CCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred EEEEECCCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEC--CCCEEECCCCCCCCCCC
T ss_conf 7898432899998899987--6999999928993999999999199999267787763423--63002100111011000
Q ss_pred ECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88999528996077885599995269996248996328990999976889554525137999733487778888899999
Q 000270 313 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1749)
Q Consensus 313 Dl~tgk~i~tL~gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~ 392 (1749)
++..+........+........ +... .++++..++.+.+|+............ ...+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 138 (293)
T d1p22a2 81 DVNTGEMLNTLIHHCEAVLHLR--FNNG---MMVTCSKDRSIAVWDMASPTDITLRRV-----------------LVGHR 138 (293)
T ss_dssp ESSSCCEEEEECCCCSCEEEEE--CCTT---EEEEEETTSCEEEEECSSSSCCEEEEE-----------------ECCCS
T ss_pred CCCCCCCCCCCCCCCCCCCCCC--CCCC---CEEECCCCCCEEEEECCCCCCCCCCCC-----------------CCCCC
T ss_conf 0024641001111110000111--1110---000013566306861344544421210-----------------00113
Q ss_pred CCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 74279998479989999418980999938999998999998512431278998279998278722223334687788887
Q 000270 393 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472 (1749)
Q Consensus 393 ~~V~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~ 472 (1749)
..+.++.+.+ ..+++++.|+.|++|++.+ ...+..+.++...+..+.+.+
T Consensus 139 ~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~---------~~~~~~~~~~~~~v~~~~~~~------------------- 188 (293)
T d1p22a2 139 AAVNVVDFDD--KYIVSASGDRTIKVWNTST---------CEFVRTLNGHKRGIACLQYRD------------------- 188 (293)
T ss_dssp SCEEEEEEET--TEEEEEETTSEEEEEETTT---------CCEEEEEECCSSCEEEEEEET-------------------
T ss_pred CCCCCCEECC--CCCCCCCCCCCEEEECCCC---------CCEEEEECCCCCCCCCCCCCC-------------------
T ss_conf 5431100000--2201106998604100788---------838899715544532216898-------------------
Q ss_pred CCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 55565557998999948980999936888888532221111245799999999999999951126999980199985799
Q 000270 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN 552 (1749)
Q Consensus 473 ~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIafSPDG 552 (1749)
..+++++.||.|++|++.+.. .+....++...+.. +++++
T Consensus 189 ---------~~l~~~~~dg~i~i~d~~~~~-----------------------------~~~~~~~~~~~v~~--~~~~~ 228 (293)
T d1p22a2 189 ---------RLVVSGSSDNTIRLWDIECGA-----------------------------CLRVLEGHEELVRC--IRFDN 228 (293)
T ss_dssp ---------TEEEEEETTSCEEEEETTTCC-----------------------------EEEEECCCSSCEEE--EECCS
T ss_pred ---------CEEEEECCCCEEEEEECCCCE-----------------------------EEEEECCCCEEEEE--CCCCC
T ss_conf ---------758876589989998665561-----------------------------46652143100000--14541
Q ss_pred CEEEEEECCCEEEEEECCC---------CCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEE
Q ss_conf 8999996798299998999---------9558971289988399999489994899994799099995
Q 000270 553 RFVLAAIMDCRICVWNAAD---------GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1749)
Q Consensus 553 ~~LASgs~DGtI~IWDl~t---------gkli~tL~gHs~~VtsIafSP~d~rlLvSas~DGtIrIWD 611 (1749)
.+|++++.||.|++||+.. ..++..+.+|.+.|++++|++ .+|+|++.||+|++||
T Consensus 229 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~---~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 229 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE---FQIVSSSHDDTILIWD 293 (293)
T ss_dssp SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECS---SCEEECCSSSEEEEEC
T ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEECC---CEEEEEECCCEEEEEC
T ss_conf 0799986799799998888864445677545578458899889999719---9999992299899959
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-32 Score=230.84 Aligned_cols=284 Identities=24% Similarity=0.400 Sum_probs=162.5
Q ss_pred EECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEEC
Q ss_conf 97789808999716789859999968996799983899099998899952899607788559999526999624899632
Q 000270 270 WSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS 349 (1749)
Q Consensus 270 WDl~Tg~~i~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrIWDl~tgk~i~tL~gHs~~VtsIaFSPdg~~~~~LvSgS 349 (1749)
|+..+.++.+.|+||.+.|.+ ++++++++||||+.||+|+|||+.+++++.++.+|.+.|.+++|+++ +|++++
T Consensus 1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~-----~l~s~s 74 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN-----IIISGS 74 (342)
T ss_dssp HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT-----EEEEEE
T ss_pred CCCCCCCCCEEECCCCCCEEE-EEEECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC-----CCCCCE
T ss_conf 989988758898886875099-99978999999918990999989999799999488999899994798-----632100
Q ss_pred CCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCC
Q ss_conf 89909999768895545251379997334877788888999997427999847998999941898099993899999899
Q 000270 350 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDS 429 (1749)
Q Consensus 350 ~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s 429 (1749)
.|+.+++|+........... .....+....+ ....++.+..|+.+.+|+..++
T Consensus 75 ~D~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~----- 127 (342)
T d2ovrb2 75 TDRTLKVWNAETGECIHTLY--------------------GHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETG----- 127 (342)
T ss_dssp TTSCEEEEETTTTEEEEEEC--------------------CCSSCEEEEEE--ETTEEEEEETTSEEEEEESSSC-----
T ss_pred ECCCCCCCCCCCCCCEECCC--------------------CCCEEEEEEEC--CCCCCCCCCCCEEEEEEECCCC-----
T ss_conf 00011111111000000012--------------------33304765202--4652212344403787403556-----
Q ss_pred CCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCC
Q ss_conf 99985124312789982799982787222233346877888875556555799899994898099993688888853222
Q 000270 430 DQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR 509 (1749)
Q Consensus 430 ~q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~ 509 (1749)
.....+............ . ...+++++.|+.+++|+.....
T Consensus 128 ----~~~~~~~~~~~~~~~~~~--~--------------------------~~~~~~~~~d~~i~~~d~~~~~------- 168 (342)
T d2ovrb2 128 ----QCLHVLMGHVAAVRCVQY--D--------------------------GRRVVSGAYDFMVKVWDPETET------- 168 (342)
T ss_dssp ----CEEEEEECCSSCEEEEEE--C--------------------------SSCEEEEETTSCEEEEEGGGTE-------
T ss_pred ----CCEEEEECCCCCCEEECC--C--------------------------CCEEEEECCCCEEEEEECCCCE-------
T ss_conf ----300111001111000001--3--------------------------3302433589869995252343-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEE
Q ss_conf 11112457999999999999999511269999801999857998999996798299998999955897128998839999
Q 000270 510 WTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLD 589 (1749)
Q Consensus 510 ~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIafSPDG~~LASgs~DGtI~IWDl~tgkli~tL~gHs~~VtsIa 589 (1749)
....+.+|...+ ..+++++.+|++++.|+.|++||+..++++..+.+|...+.++.
T Consensus 169 ----------------------~~~~~~~~~~~~--~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~ 224 (342)
T d2ovrb2 169 ----------------------CLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME 224 (342)
T ss_dssp ----------------------EEEEECCCSSCE--EEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEE
T ss_pred ----------------------EEEEECCCCCCC--CCCCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEE
T ss_conf ----------------------667872754442--10068999999995899399952556536567416653205770
Q ss_pred ECCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEC---------CCCCEEEEECCCCEEEEEECCCCCCC
Q ss_conf 9489994899994799099995899923899860002---------69999999908981999988998422
Q 000270 590 VHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF---------RDGASIILSDDVGQLYILNTGQGESQ 652 (1749)
Q Consensus 590 fSP~d~rlLvSas~DGtIrIWDi~tG~~l~tl~~~~f---------sDG~~LAsgs~DG~I~Iwdl~sGe~~ 652 (1749)
+++ .+|++++.||.|++|++...+....+..... .++.++++++.||.|++|++.+|+.+
T Consensus 225 ~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i 293 (342)
T d2ovrb2 225 LKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFI 293 (342)
T ss_dssp EET---TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEE
T ss_pred CCC---CEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEECEEECCCCCCEEEEECCCCEEEEEECCCCCEE
T ss_conf 689---999997489889998655442211122100011010000137984499908998999999999798
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.8e-33 Score=237.50 Aligned_cols=285 Identities=18% Similarity=0.241 Sum_probs=120.6
Q ss_pred EEEEEECCCCCEEEEEECCC-EEEEEECCCC--CEEEEECCCC-CCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCC
Q ss_conf 59999968996799983899-0999988999--5289960778-855999952699962489963289909999768895
Q 000270 288 ITDLAVSSNNALVASASNDC-IIRVWRLPDG--LPISVLRGHT-AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ 363 (1749)
Q Consensus 288 VtsLafSPDg~lLASGS~DG-tIrIWDl~tg--k~i~tL~gHs-~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~ 363 (1749)
+++++|+|++..|+.++.+. .|+.|+.... ..+..+.+|. ..|++++|+|..++ .+|++|+.||+|++||+..+.
T Consensus 20 ~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g-~~lasgs~Dg~i~iWd~~~~~ 98 (325)
T d1pgua1 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS-QYLCSGDESGKVIVWGWTFDK 98 (325)
T ss_dssp CCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTC-CEEEEEETTSEEEEEEEEEEG
T ss_pred EEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEEECCCC-CEEEEEECCCCEEEEEECCCC
T ss_conf 4799998997999999699879999768888765028990789998899998117999-799999489977985405886
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECC--CCCEEEEECCCCCCCCCCCCCCCEEEECC
Q ss_conf 5452513799973348777888889999974279998479989999418--98099993899999899999851243127
Q 000270 364 FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS--DTLARVWNACKPNTDDSDQPNHEIDVLSG 441 (1749)
Q Consensus 364 ~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V~sIafSPDG~~LasGS~--DGtIrIWDl~t~~~~~s~q~~~~i~~l~g 441 (1749)
....+..... .....+.+.|.+++|++++..|++++. ++.+.+|+..+ ...+..+.+
T Consensus 99 ~~~~~~~~~~------------~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 157 (325)
T d1pgua1 99 ESNSVEVNVK------------SEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS---------GNSLGEVSG 157 (325)
T ss_dssp GGTEEEEEEE------------EEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT---------CCEEEECCS
T ss_pred CEEEEECCCC------------CCCCCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEEECC---------CCCCEEEEE
T ss_conf 2156510025------------4113656737799989998822010012440478885023---------311001200
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89982799982787222233346877888875556555799899994898099993688888853222111124579999
Q 000270 442 HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPP 521 (1749)
Q Consensus 442 H~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~ 521 (1749)
|...|.+++|++++ +..+++++.||.+++|+....+...
T Consensus 158 h~~~v~~~~~~~~~-------------------------~~~~~~~~~d~~v~~~d~~~~~~~~---------------- 196 (325)
T d1pgua1 158 HSQRINACHLKQSR-------------------------PMRSMTVGDDGSVVFYQGPPFKFSA---------------- 196 (325)
T ss_dssp CSSCEEEEEECSSS-------------------------SCEEEEEETTTEEEEEETTTBEEEE----------------
T ss_pred CCCCCCCCCCCCCC-------------------------CCEEEEEECCCCCCCCCCCCCCCCE----------------
T ss_conf 12343211112343-------------------------2068886211122111122110000----------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCC-CCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEC---CCCCCE
Q ss_conf 999999999995112699998019998579-9899999679829999899995589712899883999994---899948
Q 000270 522 PMPPQPPRGGPRQRILPTPRGVNMIVWSLD-NRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH---PFNPRI 597 (1749)
Q Consensus 522 ~~~~~~~~g~~i~~l~~h~~~VtsIafSPD-G~~LASgs~DGtI~IWDl~tgkli~tL~gHs~~VtsIafS---P~d~rl 597 (1749)
.......+...|++++|+|+ +.+|++++.|+.|++||+.+++++.++.+|...+..+.|+ + ++.+
T Consensus 197 ----------~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~-dg~~ 265 (325)
T d1pgua1 197 ----------SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQK 265 (325)
T ss_dssp ----------EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSE
T ss_pred ----------ECCCCCCCCCCCEEEEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECC-CCCE
T ss_conf ----------00001577775277630345310000112332101343001222111111111111100000036-8999
Q ss_pred EEEEECCCCEEEEECCCCCEEEEEEEEEC-----------CCCCEEEEECCCCEEEEEEC
Q ss_conf 99994799099995899923899860002-----------69999999908981999988
Q 000270 598 AMSAGYDGKTIVWDIWEGIPIRIYEISRF-----------RDGASIILSDDVGQLYILNT 646 (1749)
Q Consensus 598 LvSas~DGtIrIWDi~tG~~l~tl~~~~f-----------sDG~~LAsgs~DG~I~Iwdl 646 (1749)
|++++.|+.|+|||+.++++++.+..+.. ..+.+|++++.||.|+||++
T Consensus 266 l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred EEEEECCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEC
T ss_conf 999958993999999999788999954874067699999889999999979999999979
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.6e-34 Score=243.19 Aligned_cols=354 Identities=12% Similarity=0.075 Sum_probs=234.7
Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCE------EEEEECCCCCCEEEEEEC------C-CCCEEE
Q ss_conf 379970689877999997999999997087489999778980------899971678985999996------8-996799
Q 000270 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY------CLASCRGHEGDITDLAVS------S-NNALVA 301 (1749)
Q Consensus 235 ~i~tL~GH~~~VtsIaFSpDG~~LATGS~DGtIkIWDl~Tg~------~i~tL~gHs~~VtsLafS------P-Dg~lLA 301 (1749)
.....+||.+.|+++++++ ++|+|++.|++|+||+..+.. .......|...+..+.+. . +..+++
T Consensus 6 ~~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (393)
T d1sq9a_ 6 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 83 (393)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred EEECCCCCCCCCEEEEEEC--CEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCEEE
T ss_conf 4520876367127999969--99999979996998789878877654046765420477167666750015799876899
Q ss_pred EEECCCEEEEEECCCCCEEE-----EE-----CCCCCCEEEEEECCCCC--CCEEEEEECCCCCEEEEECCCCCCCCEEE
Q ss_conf 98389909999889995289-----96-----07788559999526999--62489963289909999768895545251
Q 000270 302 SASNDCIIRVWRLPDGLPIS-----VL-----RGHTAAVTAIAFSPRPG--SVYQLLSSSDDGTCRIWDARYSQFSPRIY 369 (1749)
Q Consensus 302 SGS~DGtIrIWDl~tgk~i~-----tL-----~gHs~~VtsIaFSPdg~--~~~~LvSgS~DGtIrIWDl~tg~~i~~i~ 369 (1749)
+++.||.|++|++....... .+ ..+...+..++|.++.. ...++++++.||.+.+|++..........
T Consensus 84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~ 163 (393)
T d1sq9a_ 84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 163 (393)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EEECCCCEEEEECCCCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCEE
T ss_conf 99489919999822898205651245632431157896689998447886542179998389819998740477534102
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEE
Q ss_conf 37999733487778888899999742799984799899994189809999389999989999985124312789982799
Q 000270 370 IPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYV 449 (1749)
Q Consensus 370 i~~~~~~~sg~~~~~~~s~~~h~~~V~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~sI 449 (1749)
........ ...........+...+.+++|+|++ +|++|+.|+.|++||+.+++.... ......+.+|...|.++
T Consensus 164 ~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~---~~~~~~l~~h~~~V~~l 237 (393)
T d1sq9a_ 164 TLNWSPTL--ELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYN---FESQHSMINNSNSIRSV 237 (393)
T ss_dssp TTCCCCEE--EEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEE---EECCC---CCCCCEEEE
T ss_pred EEEECCCE--ECCCCEECCCCCCCCEEEEEECCCC-EEEEEECCCCEEEEEECCCCCCCC---CCCCCCCCCCCCEEEEC
T ss_conf 33103200--0145100025789867899978999-899993898299986023321100---00111112425638770
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC---EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9827872222333468778888755565557998999948980---9999368888885322211112457999999999
Q 000270 450 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGS---AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQ 526 (1749)
Q Consensus 450 afSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LvSgS~DGt---IrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~ 526 (1749)
+|+|++ .+|++++.|++ |++||+.++.........
T Consensus 238 ~~spdg--------------------------~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~---------------- 275 (393)
T d1sq9a_ 238 KFSPQG--------------------------SLLAIAHDSNSFGCITLYETEFGERIGSLSVP---------------- 275 (393)
T ss_dssp EECSST--------------------------TEEEEEEEETTEEEEEEEETTTCCEEEEECBC----------------
T ss_pred CCCCCC--------------------------CEEEEECCCCCCCEEEECCCCCCEEEEEECCC----------------
T ss_conf 046653--------------------------20112428988421001035321344431156----------------
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEE----EEEECCCCCCEEEEEE
Q ss_conf 999999511269999801999857998999996798299998999955897128998839----9999489994899994
Q 000270 527 PPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTY----VLDVHPFNPRIAMSAG 602 (1749)
Q Consensus 527 ~~~g~~i~~l~~h~~~VtsIafSPDG~~LASgs~DGtI~IWDl~tgkli~tL~gHs~~Vt----sIafSP~d~rlLvSas 602 (1749)
.........+.+|...|++++|+|++++|++++.|++|+|||+.+++++.++.+|...|. .++|++ ++..+++++
T Consensus 276 ~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~-~~~~~~~~~ 354 (393)
T d1sq9a_ 276 THSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDE-HGDSLAEPG 354 (393)
T ss_dssp --------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCT-TSCBCSSCC
T ss_pred CCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCEEEECC-CCCEEEECC
T ss_conf 6664310232023586660013898880698779998999999999799999886876137734899999-999999831
Q ss_pred CCCCEEEEECCCCCEEEEEEEEECCCCCEEEEECCCCEEEEEEC
Q ss_conf 79909999589992389986000269999999908981999988
Q 000270 603 YDGKTIVWDIWEGIPIRIYEISRFRDGASIILSDDVGQLYILNT 646 (1749)
Q Consensus 603 ~DGtIrIWDi~tG~~l~tl~~~~fsDG~~LAsgs~DG~I~Iwdl 646 (1749)
...+|.+..+... .........|++.+.|+.|++|..
T Consensus 355 ---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~ir~~~~ 391 (393)
T d1sq9a_ 355 ---VFDVKFLKKGWRS----GMGADLNESLCCVCLDRSIRWFRE 391 (393)
T ss_dssp ---EEEEEEECTTTSB----STTCTTSCEEEEEETTTEEEEEEE
T ss_pred ---CCEEEECCCCCEE----CCCCCCCCEEEEEECCCEEEEEEC
T ss_conf ---2469988667663----123688997999991990899908
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.3e-33 Score=236.71 Aligned_cols=272 Identities=16% Similarity=0.207 Sum_probs=213.8
Q ss_pred CCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 40379970689877999997999999997087489999778980899971678985999996899679998389909999
Q 000270 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1749)
Q Consensus 233 ~~~i~tL~GH~~~VtsIaFSpDG~~LATGS~DGtIkIWDl~Tg~~i~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrIW 312 (1749)
.+++++|+||..+|+|++|+| |+||+.||+|++|++.++ ..+|...|.+++|+++. .+++++.|++|++|
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w 72 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVN 72 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEET
T ss_pred CCEEEEECCCCCCEEEEEECC----EEEEECCCEEEEEECCCC-----CCCCCCCEEEEEECCCC-EEEEEEECCCCCCC
T ss_conf 603499988798649999895----789848991999989998-----88877878999965997-28988610122211
Q ss_pred ECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88999528996077885599995269996248996328990999976889554525137999733487778888899999
Q 000270 313 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1749)
Q Consensus 313 Dl~tgk~i~tL~gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~ 392 (1749)
++...+ ....+..+.+.+++. ++..+.++.+.+|+...+.....+.. .
T Consensus 73 ~~~~~~-------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~ 120 (287)
T d1pgua2 73 GITKHE-------FGSQPKVASANNDGF----TAVLTNDDDLLILQSFTGDIIKSVRL---------------------N 120 (287)
T ss_dssp TEEEEE-------CSSCEEEEEECSSSE----EEEEETTSEEEEEETTTCCEEEEEEC---------------------S
T ss_pred CCCCCC-------CCCCEEEEEECCCCC----EEEEEECCCCEEEECCCEEEEEECCC---------------------C
T ss_conf 111111-------122101466416785----69996033210000110035431012---------------------2
Q ss_pred CCEEEEEECCCCCEEEEECCCC-CEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 7427999847998999941898-099993899999899999851243127899827999827872222333468778888
Q 000270 393 HQIFCCAFNANGTVFVTGSSDT-LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDST 471 (1749)
Q Consensus 393 ~~V~sIafSPDG~~LasGS~DG-tIrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~ 471 (1749)
..+.++++++..+++++.++ .|++|++... .........|...+.+++|+|++
T Consensus 121 --~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~--------~~~~~~~~~~~~~v~~~~~s~~~---------------- 174 (287)
T d1pgua2 121 --SPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL--------EVSFDLKTPLRAKPSYISISPSE---------------- 174 (287)
T ss_dssp --SCEEEEEECSSEEEEEETTTSCEEEEETTEE--------EEEEECSSCCSSCEEEEEECTTS----------------
T ss_pred --CEEEEEECCCCCEEEECCCCCEEEEEECCCC--------CEEEEEEECCCCCEEEEEECCCC----------------
T ss_conf --2035652147511100022100021000122--------10001210247853699951676----------------
Q ss_pred CCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 75556555799899994898099993688888853222111124579999999999999995112699998019998579
Q 000270 472 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD 551 (1749)
Q Consensus 472 ~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIafSPD 551 (1749)
.+|++++.||.|++|++.++... ...+.+|...|++++|+|.
T Consensus 175 ----------~~l~~g~~dg~i~i~d~~~~~~~----------------------------~~~~~~h~~~v~~~~~~p~ 216 (287)
T d1pgua2 175 ----------TYIAAGDVMGKILLYDLQSREVK----------------------------TSRWAFRTSKINAISWKPA 216 (287)
T ss_dssp ----------SEEEEEETTSCEEEEETTTTEEE----------------------------ECCSCCCSSCEEEEEECCC
T ss_pred ----------CCCCCCCCCCCCCCEEECCCCCC----------------------------CCCCCCCCCCCCEEEECCC
T ss_conf ----------52110111111000000233211----------------------------0001111111100000136
Q ss_pred ----------CCEEEEEECCCEEEEEECCC-CCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEEC
Q ss_conf ----------98999996798299998999-95589712899883999994899948999947990999958
Q 000270 552 ----------NRFVLAAIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1749)
Q Consensus 552 ----------G~~LASgs~DGtI~IWDl~t-gkli~tL~gHs~~VtsIafSP~d~rlLvSas~DGtIrIWDi 612 (1749)
+.+|++|+.|+.|+||++.. ++++..+.+|...|++++|+| ++ .+++++.|+.|++|++
T Consensus 217 ~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~-~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 217 EKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp C------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE-TT-EEEEEETTSCEEEEEE
T ss_pred CCCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECC-CC-EEEEEECCCEEEEEEE
T ss_conf 5410012678870276649995999888999758999278789858999989-99-8999979992999997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.2e-31 Score=225.18 Aligned_cols=284 Identities=14% Similarity=0.179 Sum_probs=201.0
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC------EEEEECCCCCCEEEEEE---CC-CCCCCEEEEE
Q ss_conf 99971678985999996899679998389909999889995------28996077885599995---26-9996248996
Q 000270 278 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL------PISVLRGHTAAVTAIAF---SP-RPGSVYQLLS 347 (1749)
Q Consensus 278 i~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrIWDl~tgk------~i~tL~gHs~~VtsIaF---SP-dg~~~~~LvS 347 (1749)
....++|.+.|.++++++ ++|++++.|++|+||+..+.. .......|...+..+.+ .+ ++....++++
T Consensus 7 ~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 84 (393)
T d1sq9a_ 7 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 84 (393)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred EECCCCCCCCCEEEEEEC--CEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCEEEE
T ss_conf 520876367127999969--999999799969987898788776540467654204771676667500157998768999
Q ss_pred ECCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC-----CCEEEEECCCCCEEEEECC
Q ss_conf 32899099997688955452513799973348777888889999974279998479-----9899994189809999389
Q 000270 348 SSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN-----GTVFVTGSSDTLARVWNAC 422 (1749)
Q Consensus 348 gS~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V~sIafSPD-----G~~LasGS~DGtIrIWDl~ 422 (1749)
++.||.|++|++........+..... .......+...+..++|.++ +.++++++.||.+++|++.
T Consensus 85 ~~~dg~v~~w~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~ 154 (393)
T d1sq9a_ 85 TSFSGDLLFYRITREDETKKVIFEKL----------DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFH 154 (393)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEE----------CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEE
T ss_pred EECCCCEEEEECCCCCCEEEEECCCC----------CEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEE
T ss_conf 94899199998228982056512456----------32431157896689998447886542179998389819998740
Q ss_pred CCCCCC-----CCCC----CCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCE
Q ss_conf 999989-----9999----8512431278998279998278722223334687788887555655579989999489809
Q 000270 423 KPNTDD-----SDQP----NHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSA 493 (1749)
Q Consensus 423 t~~~~~-----s~q~----~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LvSgS~DGtI 493 (1749)
...... .... .........+...+.+++|+|++ +|++|+.||+|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg---------------------------~lasgs~Dg~i 207 (393)
T d1sq9a_ 155 PFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG---------------------------LIATGFNNGTV 207 (393)
T ss_dssp SSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS---------------------------EEEEECTTSEE
T ss_pred CCCCCCCEEEEEECCCEECCCCEECCCCCCCCEEEEEECCCC---------------------------EEEEEECCCCE
T ss_conf 477534102331032000145100025789867899978999---------------------------89999389829
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCC---EEEEEECC
Q ss_conf 999368888885322211112457999999999999999511269999801999857998999996798---29999899
Q 000270 494 IIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC---RICVWNAA 570 (1749)
Q Consensus 494 rIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIafSPDG~~LASgs~DG---tI~IWDl~ 570 (1749)
++||+.+++..... .....+.+|...|++++|+|+|++|++|+.|+ .|++||+.
T Consensus 208 ~iwd~~~~~~~~~~-----------------------~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~ 264 (393)
T d1sq9a_ 208 QISELSTLRPLYNF-----------------------ESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE 264 (393)
T ss_dssp EEEETTTTEEEEEE-----------------------ECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETT
T ss_pred EEEEECCCCCCCCC-----------------------CCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCEEEECCCC
T ss_conf 99860233211000-----------------------0111112425638770046653201124289884210010353
Q ss_pred CCCEEEEEC-------------CCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEE
Q ss_conf 995589712-------------899883999994899948999947990999958999238998600
Q 000270 571 DGSLVHSLT-------------GHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS 624 (1749)
Q Consensus 571 tgkli~tL~-------------gHs~~VtsIafSP~d~rlLvSas~DGtIrIWDi~tG~~l~tl~~~ 624 (1749)
+++++..+. +|...|++++|+| ++++|+|++.|++|++||+.+|+++.++.+|
T Consensus 265 ~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp-d~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH 330 (393)
T d1sq9a_ 265 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKERITTLNMH 330 (393)
T ss_dssp TCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCC-CCCEEEEECCCCEEEEEECCCCCEEEEECCC
T ss_conf 21344431156666431023202358666001389-8880698779998999999999799999886
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-29 Score=212.02 Aligned_cols=273 Identities=23% Similarity=0.374 Sum_probs=216.0
Q ss_pred EEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCEE
Q ss_conf 08999716789859999968996799983899099998899952899607788559999526999624899632899099
Q 000270 276 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355 (1749)
Q Consensus 276 ~~i~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrIWDl~tgk~i~tL~gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIr 355 (1749)
+.+..+..|...|+|++| ++++||+|+.||+|+|||+.+++++.++.+|.+.|++++|.+ + +|++++.|+.|+
T Consensus 6 ~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~--~---~l~s~s~D~~i~ 78 (293)
T d1p22a2 6 QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE--R---VIITGSSDSTVR 78 (293)
T ss_dssp CCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCS--S---EEEEEETTSCEE
T ss_pred EEEECCCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEECCC--C---EEECCCCCCCCC
T ss_conf 898432899998899987--699999992899399999999919999926778776342363--0---021001110110
Q ss_pred EEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 99768895545251379997334877788888999997427999847998999941898099993899999899999851
Q 000270 356 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHE 435 (1749)
Q Consensus 356 IWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q~~~~ 435 (1749)
+|++..+........ .......+.+....++++..++.+.+|+..... ....
T Consensus 79 ~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 130 (293)
T d1p22a2 79 VWDVNTGEMLNTLIH----------------------HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPT------DITL 130 (293)
T ss_dssp EEESSSCCEEEEECC----------------------CCSCEEEEECCTTEEEEEETTSCEEEEECSSSS------CCEE
T ss_pred CCCCCCCCCCCCCCC----------------------CCCCCCCCCCCCCCEEECCCCCCEEEEECCCCC------CCCC
T ss_conf 000024641001111----------------------110000111111000001356630686134454------4421
Q ss_pred EEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 24312789982799982787222233346877888875556555799899994898099993688888853222111124
Q 000270 436 IDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYH 515 (1749)
Q Consensus 436 i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~ 515 (1749)
...+..|...+..+.+.+ ..+++++.|+.+++|++.+.+
T Consensus 131 ~~~~~~~~~~v~~~~~~~----------------------------~~~~~~s~d~~i~~~d~~~~~------------- 169 (293)
T d1p22a2 131 RRVLVGHRAAVNVVDFDD----------------------------KYIVSASGDRTIKVWNTSTCE------------- 169 (293)
T ss_dssp EEEECCCSSCEEEEEEET----------------------------TEEEEEETTSEEEEEETTTCC-------------
T ss_pred CCCCCCCCCCCCCCEECC----------------------------CCCCCCCCCCCEEEECCCCCC-------------
T ss_conf 210001135431100000----------------------------220110699860410078883-------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCC
Q ss_conf 57999999999999999511269999801999857998999996798299998999955897128998839999948999
Q 000270 516 LKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP 595 (1749)
Q Consensus 516 l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIafSPDG~~LASgs~DGtI~IWDl~tgkli~tL~gHs~~VtsIafSP~d~ 595 (1749)
....+.++...+..+.+ ++.++++++.|+.|++||+.+...+..+.+|...+..+. + +.
T Consensus 170 ----------------~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~--~-~~ 228 (293)
T d1p22a2 170 ----------------FVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR--F-DN 228 (293)
T ss_dssp ----------------EEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE--C-CS
T ss_pred ----------------EEEEECCCCCCCCCCCC--CCCEEEEECCCCEEEEEECCCCEEEEEECCCCEEEEECC--C-CC
T ss_conf ----------------88997155445322168--987588765899899986655614665214310000014--5-41
Q ss_pred CEEEEEECCCCEEEEECCC---------CCEEEEEEEEECC------CCCEEEEECCCCEEEEEE
Q ss_conf 4899994799099995899---------9238998600026------999999990898199998
Q 000270 596 RIAMSAGYDGKTIVWDIWE---------GIPIRIYEISRFR------DGASIILSDDVGQLYILN 645 (1749)
Q Consensus 596 rlLvSas~DGtIrIWDi~t---------G~~l~tl~~~~fs------DG~~LAsgs~DG~I~Iwd 645 (1749)
.+|++++.||.|++||+.. ..++.++..|... |+.+|++++.||.|+|||
T Consensus 229 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 229 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC
T ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCEEEEEC
T ss_conf 07999867997999988888644456775455784588998899997199999992299899959
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=100.00 E-value=2.6e-31 Score=222.87 Aligned_cols=331 Identities=13% Similarity=0.055 Sum_probs=206.6
Q ss_pred EEEEECC-CCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCC--EEEEEECCCCCEEEEE
Q ss_conf 9999979-999999970874899997789808999716789859999968996799983899--0999988999528996
Q 000270 247 YCAIFDR-SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDC--IIRVWRLPDGLPISVL 323 (1749)
Q Consensus 247 tsIaFSp-DG~~LATGS~DGtIkIWDl~Tg~~i~tL~gHs~~VtsLafSPDg~lLASGS~DG--tIrIWDl~tgk~i~tL 323 (1749)
+.-.||| ||+++|+++. |.|++|++.++..++. +|...|.+++|+||+++|++++.+. .|++|++.+++. ..+
T Consensus 6 ~~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~ 81 (360)
T d1k32a3 6 FAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKF 81 (360)
T ss_dssp GEEEEEECGGGCEEEEET-TEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EEC
T ss_pred HCCCCCCCCCCEEEEEEC-CEEEEEECCCCCEEEC--CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCE-EEE
T ss_conf 005146889999999989-9699998999948991--699988889998999999999928998999998999948-875
Q ss_pred CCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 07788559999526999624899632899099997688955452513799973348777888889999974279998479
Q 000270 324 RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN 403 (1749)
Q Consensus 324 ~gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V~sIafSPD 403 (1749)
..|...|.+++|+|+++ +|++++.++.+.+|++.++.....+. .+...+.+++|+|+
T Consensus 82 ~~~~~~v~~~~~spdg~---~l~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~spd 138 (360)
T d1k32a3 82 EENLGNVFAMGVDRNGK---FAVVANDRFEIMTVDLETGKPTVIER--------------------SREAMITDFTISDN 138 (360)
T ss_dssp CCCCCSEEEEEECTTSS---EEEEEETTSEEEEEETTTCCEEEEEE--------------------CSSSCCCCEEECTT
T ss_pred ECCCCEEEEEEECCCCC---CCCEECCCCCCCCCCCCCCCEEEEEE--------------------CCCCCCCCHHHCCC
T ss_conf 08971277412114543---21000111110000012221000000--------------------13552023012132
Q ss_pred CCEEEEEC----------CCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98999941----------89809999389999989999985124312789982799982787222233346877888875
Q 000270 404 GTVFVTGS----------SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1749)
Q Consensus 404 G~~LasGS----------~DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~ 473 (1749)
|++|+.+. .++.+++|++.++ ....+..+...+..+.|+|++
T Consensus 139 g~~la~~~~~~~~~~~~~~~~~~~v~d~~~~----------~~~~~~~~~~~~~~~~~spdg------------------ 190 (360)
T d1k32a3 139 SRFIAYGFPLKHGETDGYVMQAIHVYDMEGR----------KIFAATTENSHDYAPAFDADS------------------ 190 (360)
T ss_dssp SCEEEEEEEECSSTTCSCCEEEEEEEETTTT----------EEEECSCSSSBEEEEEECTTS------------------
T ss_pred EEEEEEECCCCCCCEEECCCCCEEEECCCCC----------CEEEECCCCCCCCCCCCCCCC------------------
T ss_conf 2566521233121100025654266304557----------135303543221100125779------------------
Q ss_pred CCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 55655579989999489809999368888885322211112457999999999999999511269999801999857998
Q 000270 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 553 (1749)
Q Consensus 474 ~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIafSPDG~ 553 (1749)
+.|++++.++.+.+|+......... .......+..+...+..+.|++++.
T Consensus 191 --------~~l~~~s~~~~~~~~d~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~s~~~~ 240 (360)
T d1k32a3 191 --------KNLYYLSYRSLDPSPDRVVLNFSFE----------------------VVSKPFVIPLIPGSPNPTKLVPRSM 240 (360)
T ss_dssp --------CEEEEEESCCCCCEECSSSSCEECC----------------------SCBEEEEEESSTTCCCGGGCCCGGG
T ss_pred --------CEEEEEECCCCEECCCCCCCCEEEC----------------------CCCCEEEEECCCCCCCCCEECCCCC
T ss_conf --------9999995998557533354402320----------------------3641179852469601206877767
Q ss_pred EEEEEECCC-----EEEEEECCCCCEEEEECCCCCCEEEEEECCCCC--CEEEEEECCCCEEEEECCCCCEEEEEE----
Q ss_conf 999996798-----299998999955897128998839999948999--489999479909999589992389986----
Q 000270 554 FVLAAIMDC-----RICVWNAADGSLVHSLTGHTESTYVLDVHPFNP--RIAMSAGYDGKTIVWDIWEGIPIRIYE---- 622 (1749)
Q Consensus 554 ~LASgs~DG-----tI~IWDl~tgkli~tL~gHs~~VtsIafSP~d~--rlLvSas~DGtIrIWDi~tG~~l~tl~---- 622 (1749)
.++++..+. .+..+++..+.. ..+..+.+.+..+.+...+. .++++++.++.|++||+.+++......
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~v~~ 319 (360)
T d1k32a3 241 TSEAGEYDLNDMYKRSSPINVDPGDY-RMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTD 319 (360)
T ss_dssp SCCCCCCCCTTGGGGCEECSCCCBCE-EEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEEEE
T ss_pred CCCCCCEEECCCCCCEEECCCCCCCE-EEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE
T ss_conf 15531136526654001012476752-67541389856999973599706999648998799997999749886488687
Q ss_pred EEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCEEEECCCCCCEE
Q ss_conf 00026999999990898199998899842235421023318975446
Q 000270 623 ISRFRDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLV 669 (1749)
Q Consensus 623 ~~~fsDG~~LAsgs~DG~I~Iwdl~sGe~~k~~~~~~fFs~D~~~Lv 669 (1749)
..+.+||++|++++.||.|++|++..++... ....|++||+
T Consensus 320 ~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~------~~~~d~~~~~ 360 (360)
T d1k32a3 320 LRLSADRKTVMVRKDDGKIYTFPLEKPEDER------TVETDKRPLV 360 (360)
T ss_dssp EEECTTSCEEEEEETTSCEEEEESSCTTSCE------ECCCCSSCEE
T ss_pred EEECCCCCEEEEEECCCEEEEEECCCCCCCE------EEEECCCCCC
T ss_conf 9999989899999789949999999998545------9984162259
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=7.6e-30 Score=212.91 Aligned_cols=292 Identities=10% Similarity=0.049 Sum_probs=209.6
Q ss_pred EEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE---EECCCCCCEEEEEECCCCCCCEEEEEECCCC
Q ss_conf 0899971678985999996899679998389909999889995289---9607788559999526999624899632899
Q 000270 276 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS---VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG 352 (1749)
Q Consensus 276 ~~i~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrIWDl~tgk~i~---tL~gHs~~VtsIaFSPdg~~~~~LvSgS~DG 352 (1749)
+++...++|...|++|+|+|++.+||+|+.||+|+|||+.++.... ...+|.+.|++++|+|++. .+|++|+.||
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~--~~l~sg~~d~ 79 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD--LQIYVGTVQG 79 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSS--EEEEEEETTS
T ss_pred CEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCC--CEEEECCCCC
T ss_conf 75976889989788899958999999997999299997569986368988558999889999958999--7899812653
Q ss_pred CEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCC
Q ss_conf 09999768895545251379997334877788888999997427999847998999941898099993899999899999
Q 000270 353 TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQP 432 (1749)
Q Consensus 353 tIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q~ 432 (1749)
.|++|++........... .+........+.++...+++++.++.+++||++.....
T Consensus 80 ~v~~w~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~----- 135 (342)
T d1yfqa_ 80 EILKVDLIGSPSFQALTN-------------------NEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG----- 135 (342)
T ss_dssp CEEEECSSSSSSEEECBS-------------------CCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTB-----
T ss_pred CEEEEECCCCCCCCCCCC-------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-----
T ss_conf 114542044320000011-------------------11111111111111111111012221110202344433-----
Q ss_pred CCCEEEECCC--CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCC
Q ss_conf 8512431278--99827999827872222333468778888755565557998999948980999936888888532221
Q 000270 433 NHEIDVLSGH--ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1749)
Q Consensus 433 ~~~i~~l~gH--~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~ 510 (1749)
.........+ ........+.+.. ..+++++.||.|++|++.........
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~d~~i~~~~~~~~~~~~~~--- 186 (342)
T d1yfqa_ 136 VIAVKNLNSNNTKVKNKIFTMDTNS--------------------------SRLIVGMNNSQVQWFRLPLCEDDNGT--- 186 (342)
T ss_dssp CEEEEESCSSSSSSCCCEEEEEECS--------------------------SEEEEEESTTEEEEEESSCCTTCCCE---
T ss_pred EEEECCCCCCCCCCEEEEEEEECCC--------------------------CCEEEECCCCCEEEEECCCCCCCCEE---
T ss_conf 0230002430012000001000168--------------------------70246517984788760567634111---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE-ECCCCCEEEEEECCCEEEEEECCCCCEE---------E----
Q ss_conf 1112457999999999999999511269999801999-8579989999967982999989999558---------9----
Q 000270 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV-WSLDNRFVLAAIMDCRICVWNAADGSLV---------H---- 576 (1749)
Q Consensus 511 ~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIa-fSPDG~~LASgs~DGtI~IWDl~tgkli---------~---- 576 (1749)
.........+.+.. ++.++..+++++.||.+.+|+....... .
T Consensus 187 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~ 243 (342)
T d1yfqa_ 187 -----------------------IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243 (342)
T ss_dssp -----------------------EEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCC
T ss_pred -----------------------EEECCCCCCEEEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEECCCCCEEEEEEE
T ss_conf -----------------------210254221014676369998788654899599998059864011123512565553
Q ss_pred --EECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEE-------ECCCCCEEEEECCCCEEEEEEC
Q ss_conf --712899883999994899948999947990999958999238998600-------0269999999908981999988
Q 000270 577 --SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS-------RFRDGASIILSDDVGQLYILNT 646 (1749)
Q Consensus 577 --tL~gHs~~VtsIafSP~d~rlLvSas~DGtIrIWDi~tG~~l~tl~~~-------~fsDG~~LAsgs~DG~I~Iwdl 646 (1749)
...+|...|++++|+| ++.+|+||+.||.|++||+.+++.+..+..+ ..++|.+||++..|+.+.+|..
T Consensus 244 ~~~~~~~~~~v~~l~~sp-~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 244 NLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred CCCCCCCCCCCEEEEECC-CCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCEEEEEECCCCEEEEEE
T ss_conf 147776235431599669-844799987999899999998949887058999879999947999999991992788301
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=8.6e-30 Score=212.52 Aligned_cols=265 Identities=14% Similarity=0.123 Sum_probs=200.8
Q ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCE
Q ss_conf 80899971678985999996899679998389909999889995289960778855999952699962489963289909
Q 000270 275 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354 (1749)
Q Consensus 275 g~~i~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrIWDl~tgk~i~tL~gHs~~VtsIaFSPdg~~~~~LvSgS~DGtI 354 (1749)
.+++++|.||..+|++++|+| |++|+.||+|++|++.++ ..+|...|.+++|+++. .+++++.|++|
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~----~~~s~s~D~~v 69 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ----EYSSISWDDTL 69 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT----CCEEEETTTEE
T ss_pred CCEEEEECCCCCCEEEEEECC----EEEEECCCEEEEEECCCC-----CCCCCCCEEEEEECCCC----EEEEEEECCCC
T ss_conf 603499988798649999895----789848991999989998-----88877878999965997----28988610122
Q ss_pred EEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 99976889554525137999733487778888899999742799984799899994189809999389999989999985
Q 000270 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNH 434 (1749)
Q Consensus 355 rIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q~~~ 434 (1749)
++|++.... ....+.++++++++..++++. ++.+.+|+..+ ..
T Consensus 70 ~~w~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------~~ 112 (287)
T d1pgua2 70 KVNGITKHE---------------------------FGSQPKVASANNDGFTAVLTN-DDDLLILQSFT---------GD 112 (287)
T ss_dssp EETTEEEEE---------------------------CSSCEEEEEECSSSEEEEEET-TSEEEEEETTT---------CC
T ss_pred CCCCCCCCC---------------------------CCCCEEEEEECCCCCEEEEEE-CCCCEEEECCC---------EE
T ss_conf 211111111---------------------------122101466416785699960-33210000110---------03
Q ss_pred CEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC-CEEEEECCCCCCCCCCCCCCCC
Q ss_conf 124312789982799982787222233346877888875556555799899994898-0999936888888532221111
Q 000270 435 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG-SAIIWIPRSRRSHPKAARWTQA 513 (1749)
Q Consensus 435 ~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LvSgS~DG-tIrIWDl~s~k~~~~~~~~~~~ 513 (1749)
.+..+.. ...+.+ +++++ ..+++++.++ .+++|++......
T Consensus 113 ~~~~~~~-~~~~~~--~~~~~--------------------------~~~~v~~~~~~~v~~~~~~~~~~~--------- 154 (287)
T d1pgua2 113 IIKSVRL-NSPGSA--VSLSQ--------------------------NYVAVGLEEGNTIQVFKLSDLEVS--------- 154 (287)
T ss_dssp EEEEEEC-SSCEEE--EEECS--------------------------SEEEEEETTTSCEEEEETTEEEEE---------
T ss_pred EEEECCC-CCEEEE--EECCC--------------------------CCEEEECCCCCEEEEEECCCCCEE---------
T ss_conf 5431012-220356--52147--------------------------511100022100021000122100---------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE-EECCCCCCEEEEEECC
Q ss_conf 245799999999999999951126999980199985799899999679829999899995589-7128998839999948
Q 000270 514 YHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVH-SLTGHTESTYVLDVHP 592 (1749)
Q Consensus 514 ~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIafSPDG~~LASgs~DGtI~IWDl~tgkli~-tL~gHs~~VtsIafSP 592 (1749)
......+...+++++|+|++.+|++|+.|+.|++||+.++.... .+.+|...|.+++|+|
T Consensus 155 -------------------~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p 215 (287)
T d1pgua2 155 -------------------FDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKP 215 (287)
T ss_dssp -------------------EECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECC
T ss_pred -------------------EEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEECC
T ss_conf -------------------0121024785369995167652110111111000000233211000111111110000013
Q ss_pred C---------CCCEEEEEECCCCEEEEECCC-CCEEEEEEEE-------ECCCCCEEEEECCCCEEEEEEC
Q ss_conf 9---------994899994799099995899-9238998600-------0269999999908981999988
Q 000270 593 F---------NPRIAMSAGYDGKTIVWDIWE-GIPIRIYEIS-------RFRDGASIILSDDVGQLYILNT 646 (1749)
Q Consensus 593 ~---------d~rlLvSas~DGtIrIWDi~t-G~~l~tl~~~-------~fsDG~~LAsgs~DG~I~Iwdl 646 (1749)
. +..++++++.|+.|++|++.+ ++.+..+.+| .+.++..|++++.||.|++|++
T Consensus 216 ~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 216 AEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286 (287)
T ss_dssp CC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred CCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCCEEEEEECCCEEEEEEE
T ss_conf 65410012678870276649995999888999758999278789858999989998999979992999997
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=1.3e-28 Score=204.52 Aligned_cols=334 Identities=9% Similarity=-0.019 Sum_probs=173.4
Q ss_pred CCCCCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEE--E---CCCCCCEEEEEECCCCCEE
Q ss_conf 8722234403799706898779999979999999970874899997789808999--7---1678985999996899679
Q 000270 226 PSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS--C---RGHEGDITDLAVSSNNALV 300 (1749)
Q Consensus 226 ~s~~~~t~~~i~tL~GH~~~VtsIaFSpDG~~LATGS~DGtIkIWDl~Tg~~i~t--L---~gHs~~VtsLafSPDg~lL 300 (1749)
-.|...+++.+.+|.+|. .+..++|||||++|++++.|++|++||+.+++.... + .+|.+.+.+++|+|||++|
T Consensus 45 ~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l 123 (426)
T d1hzua2 45 ALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYT 123 (426)
T ss_dssp EEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEE
T ss_pred EEEECCCCCEEEEEECCC-CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCEEEEEEECCCCCEE
T ss_conf 999999995999996899-8038999899999999958998899975688604899986788876458850026889879
Q ss_pred EE-EECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCCC
Q ss_conf 99-83899099998899952899607788559999526999624899632899099997688955452513799973348
Q 000270 301 AS-ASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAG 379 (1749)
Q Consensus 301 AS-GS~DGtIrIWDl~tgk~i~tL~gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg 379 (1749)
++ +..++.+++||..++.++..+.++...+..+.+.+++. ...++.+.|+...+|.......+..+......
T Consensus 124 ~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~----- 196 (426)
T d1hzua2 124 IAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR--VAAIIASHEHPEFIVNVKETGKVLLVNYKDID----- 196 (426)
T ss_dssp EEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC--EEEEEECSSSSEEEEEETTTTEEEEEECSSSS-----
T ss_pred EEEECCCCEEEEECCCCCCEEEEEECCCCCCCCEEECCCCC--EEEEEECCCCCEEEEECCCCCEEEEEEECCCC-----
T ss_conf 99635897699985776412578622677736436427885--03899878787888852789769999924665-----
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCEEEEEC-CCCCEEEEECCCCCCCCCCCCCCCEEEEC--CCCCCEEEEEECCCCC
Q ss_conf 77788888999997427999847998999941-89809999389999989999985124312--7899827999827872
Q 000270 380 RNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS-SDTLARVWNACKPNTDDSDQPNHEIDVLS--GHENDVNYVQFSGCAV 456 (1749)
Q Consensus 380 ~~~~~~~s~~~h~~~V~sIafSPDG~~LasGS-~DGtIrIWDl~t~~~~~s~q~~~~i~~l~--gH~~~V~sIafSpdg~ 456 (1749)
........+...+..++|+|++++++++. .+..+.+++..+. ..+.... .+......+.+.....
T Consensus 197 ---~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (426)
T d1hzua2 197 ---NLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDR---------RLSALVDVGKTPHPGRGANFVHPKY 264 (426)
T ss_dssp ---SCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTT---------EEEEEEECSSCCCCSCCEEEEETTT
T ss_pred ---CEEEEEECCCCCCEEEEECCCCCEEEEEEECCCCEEEEECCCC---------CEEEEECCCCCCCCCCEEEEECCCC
T ss_conf ---2045775667753761377888678864201100000002556---------2788750587444342011006987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22233346877888875556555799899994898099993688888853222111124579999999999999995112
Q 000270 457 ASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI 536 (1749)
Q Consensus 457 as~~s~~~~~~~~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l 536 (1749)
. .-..++.+.|+.+.+|+....... .........+
T Consensus 265 ~-----------------------~~~~~~~~~d~~v~~~~~~~~~~~----------------------~~~~~~~~~l 299 (426)
T d1hzua2 265 G-----------------------PVWSTSHLGDGSISLIGTDPKNHP----------------------QYAWKKVAEL 299 (426)
T ss_dssp E-----------------------EEEEEECTTTCEEEEEECCTTTCT----------------------TTBTSEEEEE
T ss_pred C-----------------------CEEEECCCCCCEEEEEECCCCCCC----------------------CCCCEEEEEE
T ss_conf 7-----------------------457741578965988522566520----------------------3302586898
Q ss_pred CCCCCCEEEEEECCCCCEEEE-------EECCCEEEEEECCCCCEEEEE---------CCCCCCEEEEEECCCCCCEEEE
Q ss_conf 699998019998579989999-------967982999989999558971---------2899883999994899948999
Q 000270 537 LPTPRGVNMIVWSLDNRFVLA-------AIMDCRICVWNAADGSLVHSL---------TGHTESTYVLDVHPFNPRIAMS 600 (1749)
Q Consensus 537 ~~h~~~VtsIafSPDG~~LAS-------gs~DGtI~IWDl~tgkli~tL---------~gHs~~VtsIafSP~d~rlLvS 600 (1749)
.+|...+..++|+||+++|++ +..+++|+|||+.++++..++ ..|...|..++|+|++.+++++
T Consensus 300 ~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs 379 (426)
T d1hzua2 300 QGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFS 379 (426)
T ss_dssp ECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEE
T ss_pred ECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCHHCCCCCCCCCEEEEEECCCCCEEEEE
T ss_conf 66887636787489986188850679880228879999898787670895021102567788518987999999999999
Q ss_pred E----ECCCCEEEEECCCCCEEEEEEEE
Q ss_conf 9----47990999958999238998600
Q 000270 601 A----GYDGKTIVWDIWEGIPIRIYEIS 624 (1749)
Q Consensus 601 a----s~DGtIrIWDi~tG~~l~tl~~~ 624 (1749)
+ +.+|.|+|||..+++....+...
T Consensus 380 ~~~~~~~~~~i~v~D~~T~k~~~~i~~~ 407 (426)
T d1hzua2 380 VWNGKNDSSALVVVDDKTLKLKAVVKDP 407 (426)
T ss_dssp ECCCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred EECCCCCCCEEEEEECCCCEEEEEECCC
T ss_conf 7248888982999999987389998789
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.97 E-value=7.5e-30 Score=212.93 Aligned_cols=306 Identities=12% Similarity=0.071 Sum_probs=211.3
Q ss_pred CCCCEEEEECCCCCCEEEEEECCCCCEEEEEECC--CEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCE
Q ss_conf 3440379970689877999997999999997087--48999977898089997167898599999689967999838990
Q 000270 231 QKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDD--RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCI 308 (1749)
Q Consensus 231 ~t~~~i~tL~GH~~~VtsIaFSpDG~~LATGS~D--GtIkIWDl~Tg~~i~tL~gHs~~VtsLafSPDg~lLASGS~DGt 308 (1749)
.....++ + +|...|++++|+|||++|++++.+ ..|++|++.++.. ..+..|...|.+++|+|++++|++++.++.
T Consensus 32 ~~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~~~~v~~~~~spdg~~l~~~~~~~~ 108 (360)
T d1k32a3 32 SGTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFE 108 (360)
T ss_dssp TSSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEEEECTTSSEEEEEETTSE
T ss_pred CCCCEEE-C-CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCE-EEEECCCCEEEEEEECCCCCCCCEECCCCC
T ss_conf 9994899-1-699988889998999999999928998999998999948-875089712774121145432100011111
Q ss_pred EEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEE----------ECCCCCEEEEECCCCCCCCEEECCCCCCCCC
Q ss_conf 999988999528996077885599995269996248996----------3289909999768895545251379997334
Q 000270 309 IRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLS----------SSDDGTCRIWDARYSQFSPRIYIPRPSDAVA 378 (1749)
Q Consensus 309 IrIWDl~tgk~i~tL~gHs~~VtsIaFSPdg~~~~~LvS----------gS~DGtIrIWDl~tg~~i~~i~i~~~~~~~s 378 (1749)
+++|++.++.....+..+...+.+++|+|+++ +|+. +..++.+++|++.++......
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~---~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~---------- 175 (360)
T d1k32a3 109 IMTVDLETGKPTVIERSREAMITDFTISDNSR---FIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT---------- 175 (360)
T ss_dssp EEEEETTTCCEEEEEECSSSCCCCEEECTTSC---EEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS----------
T ss_pred CCCCCCCCCCEEEEEECCCCCCCCHHHCCCEE---EEEEECCCCCCCEEECCCCCEEEECCCCCCEEEEC----------
T ss_conf 00000122210000001355202301213225---66521233121100025654266304557135303----------
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCC
Q ss_conf 87778888899999742799984799899994189809999389999989999985124312789982799982787222
Q 000270 379 GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVAS 458 (1749)
Q Consensus 379 g~~~~~~~s~~~h~~~V~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~sIafSpdg~as 458 (1749)
.+...+.+++|+|+|+.|++++.++.+.+|+........ ........+..+...+..+.|++++.
T Consensus 176 -----------~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~-- 240 (360)
T d1k32a3 176 -----------TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSF--EVVSKPFVIPLIPGSPNPTKLVPRSM-- 240 (360)
T ss_dssp -----------CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEEC--CSCBEEEEEESSTTCCCGGGCCCGGG--
T ss_pred -----------CCCCCCCCCCCCCCCCEEEEEECCCCEECCCCCCCCEEE--CCCCCEEEEECCCCCCCCCEECCCCC--
T ss_conf -----------543221100125779999999599855753335440232--03641179852469601206877767--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC---CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 23334687788887555655579989999489---809999368888885322211112457999999999999999511
Q 000270 459 RFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD---GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR 535 (1749)
Q Consensus 459 ~~s~~~~~~~~~~~~~~~s~~~~~~LvSgS~D---GtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~ 535 (1749)
.++++..+ ...++|.+.. .......
T Consensus 241 ------------------------~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~ 268 (360)
T d1k32a3 241 ------------------------TSEAGEYDLNDMYKRSSPINV----------------------------DPGDYRM 268 (360)
T ss_dssp ------------------------SCCCCCCCCTTGGGGCEECSC----------------------------CCBCEEE
T ss_pred ------------------------CCCCCCEEECCCCCCEEECCC----------------------------CCCCEEE
T ss_conf ------------------------155311365266540010124----------------------------7675267
Q ss_pred CCCCCCCEEEEEECCCC---CEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEEC
Q ss_conf 26999980199985799---899999679829999899995589712899883999994899948999947990999958
Q 000270 536 ILPTPRGVNMIVWSLDN---RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1749)
Q Consensus 536 l~~h~~~VtsIafSPDG---~~LASgs~DGtI~IWDl~tgkli~tL~gHs~~VtsIafSP~d~rlLvSas~DGtIrIWDi 612 (1749)
+..+...+..+.+...+ .++++++.++.|++||+.+++.. . |.+.|.+++|+| |++.|++++.||.|++|++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~---~~~~v~~~~~Sp-DG~~l~~~~~Dg~i~v~d~ 343 (360)
T d1k32a3 269 IIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-E---VKNNLTDLRLSA-DRKTVMVRKDDGKIYTFPL 343 (360)
T ss_dssp EEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE-E---EEEEEEEEEECT-TSCEEEEEETTSCEEEEES
T ss_pred EEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEE-E---ECCCCCEEEECC-CCCEEEEEECCCEEEEEEC
T ss_conf 5413898569999735997069996489987999979997498-8---648868799999-8989999978994999999
Q ss_pred CCCCEEEEEEEE
Q ss_conf 999238998600
Q 000270 613 WEGIPIRIYEIS 624 (1749)
Q Consensus 613 ~tG~~l~tl~~~ 624 (1749)
.++....++...
T Consensus 344 ~~~~~~~~~~~d 355 (360)
T d1k32a3 344 EKPEDERTVETD 355 (360)
T ss_dssp SCTTSCEECCCC
T ss_pred CCCCCCEEEEEC
T ss_conf 999854599841
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=1.1e-28 Score=204.98 Aligned_cols=342 Identities=10% Similarity=0.027 Sum_probs=225.4
Q ss_pred CCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE-----CCCCC
Q ss_conf 9999999708748999977898089997167898599999689967999838990999988999528996-----07788
Q 000270 254 SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL-----RGHTA 328 (1749)
Q Consensus 254 DG~~LATGS~DGtIkIWDl~Tg~~i~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrIWDl~tgk~i~tL-----~gHs~ 328 (1749)
.+-++++.+.||+|+|||+.+++++.++..|. .+..++|+|||++|++++.|++|++||+.+++..... .+|.+
T Consensus 31 ~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~ 109 (426)
T d1hzua2 31 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARS 109 (426)
T ss_dssp GGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEE
T ss_pred CEEEEEEECCCCEEEEEECCCCCEEEEEECCC-CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCC
T ss_conf 70899997599979999999995999996899-80389998999999999589988999756886048999867888764
Q ss_pred CEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEE
Q ss_conf 55999952699962489963289909999768895545251379997334877788888999997427999847998999
Q 000270 329 AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFV 408 (1749)
Q Consensus 329 ~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V~sIafSPDG~~La 408 (1749)
.+.+++|+|||+ ++++++..++.+.+||..++.....+..... ...............+++++++..++
T Consensus 110 ~~~s~~~spDG~--~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~i~~s~d~~~~~ 178 (426)
T d1hzua2 110 VESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGM---------TVDTQTYHPEPRVAAIIASHEHPEFI 178 (426)
T ss_dssp EEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEE---------CSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred EEEEEEECCCCC--EEEEEECCCCEEEEECCCCCCEEEEEECCCC---------CCCCEEECCCCCEEEEEECCCCCEEE
T ss_conf 588500268898--7999635897699985776412578622677---------73643642788503899878787888
Q ss_pred EECC-CCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE-E
Q ss_conf 9418-9809999389999989999985124312789982799982787222233346877888875556555799899-9
Q 000270 409 TGSS-DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIV-T 486 (1749)
Q Consensus 409 sGS~-DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~Lv-S 486 (1749)
.... .+.+.+++.... .........+...+..+.|++++ ++++ +
T Consensus 179 ~~~~~~~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~g--------------------------~~~~~a 224 (426)
T d1hzua2 179 VNVKETGKVLLVNYKDI--------DNLTVTSIGAAPFLADGGWDSSH--------------------------RYFMTA 224 (426)
T ss_dssp EEETTTTEEEEEECSSS--------SSCEEEEEECCSSEEEEEECTTS--------------------------CEEEEE
T ss_pred EECCCCCEEEEEEECCC--------CCEEEEEECCCCCCEEEEECCCC--------------------------CEEEEE
T ss_conf 85278976999992466--------52045775667753761377888--------------------------678864
Q ss_pred EECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 94898099993688888853222111124579999999999999995112699998019998579989999967982999
Q 000270 487 CSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICV 566 (1749)
Q Consensus 487 gS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIafSPDG~~LASgs~DGtI~I 566 (1749)
...+..+.+|+..+++......... .............+...+....+ ..|+.+.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~----------~~d~~v~~ 280 (426)
T d1hzua2 225 ANNSNKVAVIDSKDRRLSALVDVGK--------------TPHPGRGANFVHPKYGPVWSTSH----------LGDGSISL 280 (426)
T ss_dssp ETTCSEEEEEETTTTEEEEEEECSS--------------CCCCSCCEEEEETTTEEEEEEEC----------TTTCEEEE
T ss_pred EECCCCEEEEECCCCCEEEEECCCC--------------CCCCCCEEEEECCCCCCEEEECC----------CCCCEEEE
T ss_conf 2011000000025562788750587--------------44434201100698774577415----------78965988
Q ss_pred EECC-------CCCEEEEECCCCCCEEEEEECCCCCCEEE-------EEECCCCEEEEECCCCCEEEEEE----------
Q ss_conf 9899-------99558971289988399999489994899-------99479909999589992389986----------
Q 000270 567 WNAA-------DGSLVHSLTGHTESTYVLDVHPFNPRIAM-------SAGYDGKTIVWDIWEGIPIRIYE---------- 622 (1749)
Q Consensus 567 WDl~-------tgkli~tL~gHs~~VtsIafSP~d~rlLv-------Sas~DGtIrIWDi~tG~~l~tl~---------- 622 (1749)
|+.. .++...++.+|...+..++|+| ++++|+ +++.|++|+|||+.++++..++.
T Consensus 281 ~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sP-dg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~ 359 (426)
T d1hzua2 281 IGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGE 359 (426)
T ss_dssp EECCTTTCTTTBTSEEEEEECSSSCCCCEECCT-TCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCS
T ss_pred EECCCCCCCCCCCEEEEEEECCCCCEEEEECCC-CCCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCHHCCCCC
T ss_conf 522566520330258689866887636787489-9861888506798802288799998987876708950211025677
Q ss_pred -------EEECCCCCEEEEE-----CCCCEEEEEECCCCCCCCCCCCEEEECCCCC
Q ss_conf -------0002699999999-----0898199998899842235421023318975
Q 000270 623 -------ISRFRDGASIILS-----DDVGQLYILNTGQGESQKDAKYDQFFLGDYR 666 (1749)
Q Consensus 623 -------~~~fsDG~~LAsg-----s~DG~I~Iwdl~sGe~~k~~~~~~fFs~D~~ 666 (1749)
..+.+||++++++ +.+|.|.|||..+++..........++|++.
T Consensus 360 ~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~~~tp~Gk 415 (426)
T d1hzua2 360 GAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPRLITPTGK 415 (426)
T ss_dssp SCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTTCCSEEEE
T ss_pred CCCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCE
T ss_conf 88518987999999999999724888898299999998738999878984199955
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.97 E-value=5.8e-28 Score=200.14 Aligned_cols=342 Identities=13% Similarity=0.004 Sum_probs=228.6
Q ss_pred CCCCCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEE--EEEE---CCCCCCEEEEEECCCCCEE
Q ss_conf 8722234403799706898779999979999999970874899997789808--9997---1678985999996899679
Q 000270 226 PSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC--LASC---RGHEGDITDLAVSSNNALV 300 (1749)
Q Consensus 226 ~s~~~~t~~~i~tL~GH~~~VtsIaFSpDG~~LATGS~DGtIkIWDl~Tg~~--i~tL---~gHs~~VtsLafSPDg~lL 300 (1749)
..|...+++.++++..|. .+..++|||||++|++++.|+.|++||+.++.. +..+ .+|.+.+.+.+|+|||++|
T Consensus 45 ~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l 123 (432)
T d1qksa2 45 ALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYA 123 (432)
T ss_dssp EEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEE
T ss_pred EEEECCCCCEEEEEECCC-CEEEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCEEEECCCCCCCCEE
T ss_conf 999899983999973799-7137998899999999828999789981089812889984488987769843218888889
Q ss_pred -EEEECCCEEEEEECCCCCEEEEECCC-----------CCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEE
Q ss_conf -99838990999988999528996077-----------885599995269996248996328990999976889554525
Q 000270 301 -ASASNDCIIRVWRLPDGLPISVLRGH-----------TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRI 368 (1749)
Q Consensus 301 -ASGS~DGtIrIWDl~tgk~i~tL~gH-----------s~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i 368 (1749)
++++.++.|++||..+++++..+..+ ......+.+++++. .++++...++.|.+|+..+.+.....
T Consensus 124 ~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~--~~~vs~~~~~~i~~~d~~~~~~~~~~ 201 (432)
T d1qksa2 124 IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP--EFIVNVKETGKILLVDYTDLNNLKTT 201 (432)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS--EEEEEETTTTEEEEEETTCSSEEEEE
T ss_pred EEECCCCCEEEEEECCCCCCEEEECCCCCCCCCEECCCCCCEEEEEECCCCC--EEEEEECCCCEEEEEECCCCCCCEEE
T ss_conf 9981789827999076554225402477643522016888505899878999--89999816882999984378752279
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECC-CCCEEEEECCCCCCCCCCCCCCCEEEEC-----CC
Q ss_conf 13799973348777888889999974279998479989999418-9809999389999989999985124312-----78
Q 000270 369 YIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDVLS-----GH 442 (1749)
Q Consensus 369 ~i~~~~~~~sg~~~~~~~s~~~h~~~V~sIafSPDG~~LasGS~-DGtIrIWDl~t~~~~~s~q~~~~i~~l~-----gH 442 (1749)
.+ .....+.+++|+|+|+++++++. +..+.+++..+. ..+.... .|
T Consensus 202 ~i-------------------~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~---------~~~~~~~~g~~~~~ 253 (432)
T d1qksa2 202 EI-------------------SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG---------KLVAIEDTGGQTPH 253 (432)
T ss_dssp EE-------------------ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT---------EEEEEEECSSSSBC
T ss_pred EE-------------------CCCCCCCCCEECCCCCEEEEECCCCCEEEEEECCCC---------EEEEEECCCCCCCC
T ss_conf 98-------------------336754265388988799995166636777614452---------68887214862245
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE-ECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 998279998278722223334687788887555655579989999-4898099993688888853222111124579999
Q 000270 443 ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC-SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPP 521 (1749)
Q Consensus 443 ~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LvSg-S~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~ 521 (1749)
........+...+ ....+. ..++.+.+|......
T Consensus 254 ~~~~~~~~~~~~g--------------------------~~~~~~~lg~~~v~~~~~~~~~------------------- 288 (432)
T d1qksa2 254 PGRGANFVHPTFG--------------------------PVWATSHMGDDSVALIGTDPEG------------------- 288 (432)
T ss_dssp CTTCEEEEETTTE--------------------------EEEEEEBSSSSEEEEEECCTTT-------------------
T ss_pred CCCCCCEECCCCC--------------------------CEECCCCCCCCEEEECCCCCCC-------------------
T ss_conf 6766410148988--------------------------3102135688358762456655-------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEE
Q ss_conf 99999999999511269999801999857998999996798299998999955897128998839999948999489999
Q 000270 522 PMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 601 (1749)
Q Consensus 522 ~~~~~~~~g~~i~~l~~h~~~VtsIafSPDG~~LASgs~DGtI~IWDl~tgkli~tL~gHs~~VtsIafSP~d~rlLvSa 601 (1749)
...+...+....+++++..+++++.+..+++|...+.. .|.....++++ | +++.++++
T Consensus 289 --------------~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~------~~~~~~~sv~v-p-Dg~~la~~ 346 (432)
T d1qksa2 289 --------------HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN------PEAEISGSVAV-F-DIKAMTGD 346 (432)
T ss_dssp --------------CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC------SSHHHHTCEEE-E-EGGGCCCS
T ss_pred --------------CCCCCCEEEEEEECCCCCEEEEEECCCCCCEEECCCCC------CCCCEEEEEEE-E-ECHHHCCC
T ss_conf --------------54656577799886899768887268864102112678------88770359999-9-62461045
Q ss_pred ECCCCEEEEECCCCCE-----EEEEEEEECCCCCEEEEE-----CCCCEEEEEECCCCCCCCCCCCEEEECCCC
Q ss_conf 4799099995899923-----899860002699999999-----089819999889984223542102331897
Q 000270 602 GYDGKTIVWDIWEGIP-----IRIYEISRFRDGASIILS-----DDVGQLYILNTGQGESQKDAKYDQFFLGDY 665 (1749)
Q Consensus 602 s~DGtIrIWDi~tG~~-----l~tl~~~~fsDG~~LAsg-----s~DG~I~Iwdl~sGe~~k~~~~~~fFs~D~ 665 (1749)
+.|+.+++|++.++.. -+.+...+.+||++|+++ +.+|.|.|||..+++.++.......++|++
T Consensus 347 s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~~~~tp~G 420 (432)
T d1qksa2 347 GSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDERLVTPTG 420 (432)
T ss_dssp SSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTTCCSEEE
T ss_pred CCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCEEEEEECCCCCCCCCE
T ss_conf 56784486334344445789986897679899999999970488888868999999955886846888408970
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.97 E-value=1.3e-24 Score=177.45 Aligned_cols=285 Identities=10% Similarity=0.078 Sum_probs=216.2
Q ss_pred EEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEE-EEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEC
Q ss_conf 9997087489999778980899971678985999996899679-998389909999889995289960778855999952
Q 000270 258 VITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV-ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFS 336 (1749)
Q Consensus 258 LATGS~DGtIkIWDl~Tg~~i~tL~gHs~~VtsLafSPDg~lL-ASGS~DGtIrIWDl~tgk~i~tL~gHs~~VtsIaFS 336 (1749)
.++++.|++|.|||+.+++.++++... ..+..++|+|||++| ++++.++.|++||+.+++.+..+..+. .+..++|+
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~ 82 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVS 82 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEEC
T ss_pred EEEECCCCEEEEEECCCCEEEEEEECC-CCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECCC-CCCCCCCC
T ss_conf 999789998999999999599999889-9836999928989999997899989999999894103200024-64311000
Q ss_pred CCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEE-EECCCCC
Q ss_conf 699962489963289909999768895545251379997334877788888999997427999847998999-9418980
Q 000270 337 PRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFV-TGSSDTL 415 (1749)
Q Consensus 337 Pdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V~sIafSPDG~~La-sGS~DGt 415 (1749)
+++. ..++++..++.+.+|+..++.....+. ....+.+++|+|++..++ ++..++.
T Consensus 83 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~dg~~~~~~~~~~~~ 139 (301)
T d1l0qa2 83 PDGK--QVYVTNMASSTLSVIDTTSNTVAGTVK---------------------TGKSPLGLALSPDGKKLYVTNNGDKT 139 (301)
T ss_dssp TTSS--EEEEEETTTTEEEEEETTTTEEEEEEE---------------------CSSSEEEEEECTTSSEEEEEETTTTE
T ss_pred CCCC--CCCCCCCCCCEEEECCCCCCEEEEECC---------------------CCCCCEEEEEECCCCEEEEEECCCCC
T ss_conf 1111--111111111001100124302432024---------------------44442378760589715542011110
Q ss_pred EEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC-CCEE
Q ss_conf 999938999998999998512431278998279998278722223334687788887555655579989999489-8099
Q 000270 416 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD-GSAI 494 (1749)
Q Consensus 416 IrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LvSgS~D-GtIr 494 (1749)
+.+|+..+ ...+..+. +...+..+.+++++ ..+++++.+ +.+.
T Consensus 140 ~~~~~~~~---------~~~~~~~~-~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~ 183 (301)
T d1l0qa2 140 VSVINTVT---------KAVINTVS-VGRSPKGIAVTPDG--------------------------TKVYVANFDSMSIS 183 (301)
T ss_dssp EEEEETTT---------TEEEEEEE-CCSSEEEEEECTTS--------------------------SEEEEEETTTTEEE
T ss_pred EEEEECCC---------CCEEEECC-CCCCCEEEEEECCC--------------------------CCEEEECCCCCCCC
T ss_conf 01100014---------63035315-67884288860465--------------------------40131012111111
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEC---CCEEEEEECCC
Q ss_conf 993688888853222111124579999999999999995112699998019998579989999967---98299998999
Q 000270 495 IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM---DCRICVWNAAD 571 (1749)
Q Consensus 495 IWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIafSPDG~~LASgs~---DGtI~IWDl~t 571 (1749)
+|...... ..........+..++|++++..++++.. ++.|++||..+
T Consensus 184 ~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t 233 (301)
T d1l0qa2 184 VIDTVTNS------------------------------VIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT 233 (301)
T ss_dssp EEETTTTE------------------------------EEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred CCCCCCEE------------------------------EEECCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEEEEECCC
T ss_conf 11111000------------------------------111013357750311011110111100210000232365699
Q ss_pred CCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEECC--CCCEEEE
Q ss_conf 95589712899883999994899948999947990999958999238998600026--9999999
Q 000270 572 GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR--DGASIIL 634 (1749)
Q Consensus 572 gkli~tL~gHs~~VtsIafSP~d~rlLvSas~DGtIrIWDi~tG~~l~tl~~~~fs--DG~~LAs 634 (1749)
++++..+..+ ..+..++|+|++..++++++.|+.|.+||+.+++++.++..+..| -|.++++
T Consensus 234 ~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~vg~~P~~~g~f~~~ 297 (301)
T d1l0qa2 234 NKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKNPYASGQFIGS 297 (301)
T ss_dssp TEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEE
T ss_pred CEEEEEECCC-CCEEEEEEECCCCEEEEEECCCCEEEEEECCCCEEEEEEECCCCCCEEEEECCC
T ss_conf 8199998489-987799991898999999899996999999999599999689997493798145
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.95 E-value=8.3e-26 Score=185.55 Aligned_cols=340 Identities=7% Similarity=-0.079 Sum_probs=233.5
Q ss_pred CCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE--EEEE---CCCC
Q ss_conf 9999999970874899997789808999716789859999968996799983899099998899952--8996---0778
Q 000270 253 RSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLP--ISVL---RGHT 327 (1749)
Q Consensus 253 pDG~~LATGS~DGtIkIWDl~Tg~~i~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrIWDl~tgk~--i~tL---~gHs 327 (1749)
++.-++++.+.+|.|.|||..+++++..+..+ ..+..++|||||++|++++.|+.|++||+.+++. +..+ .+|.
T Consensus 30 ~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~ 108 (432)
T d1qksa2 30 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR 108 (432)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred CCCEEEEEECCCCEEEEEECCCCCEEEEEECC-CCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCC
T ss_conf 78289999769997999989998399997379-97137998899999999828999789981089812889984488987
Q ss_pred CCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEE
Q ss_conf 85599995269996248996328990999976889554525137999733487778888899999742799984799899
Q 000270 328 AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVF 407 (1749)
Q Consensus 328 ~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V~sIafSPDG~~L 407 (1749)
+.+.+..|+|||+ +++++++.++.|++||..+++....+...... ..............+.++++|..+
T Consensus 109 ~~~~s~~~SpDG~--~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~---------~~~~~~~~~~~~~~v~~s~dg~~~ 177 (432)
T d1qksa2 109 SIETSKMEGWEDK--YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT---------YDEQEYHPEPRVAAILASHYRPEF 177 (432)
T ss_dssp EEEECCSTTCTTT--EEEEEEEETTEEEEEETTTCCEEEEEECCEEC---------TTTCCEESCCCEEEEEECSSSSEE
T ss_pred CEEEECCCCCCCC--EEEEECCCCCEEEEEECCCCCCEEEECCCCCC---------CCCEECCCCCCEEEEEECCCCCEE
T ss_conf 7698432188888--89998178982799907655422540247764---------352201688850589987899989
Q ss_pred -EEECCCCCEEEEECCCCCCCCCCCCCCCEEEE-CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf -99418980999938999998999998512431-2789982799982787222233346877888875556555799899
Q 000270 408 -VTGSSDTLARVWNACKPNTDDSDQPNHEIDVL-SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIV 485 (1749)
Q Consensus 408 -asGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l-~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~Lv 485 (1749)
++...++.|.+|+.... ...... ..+...+..+.|+|++ .+++
T Consensus 178 ~vs~~~~~~i~~~d~~~~---------~~~~~~~i~~g~~~~~~~~spdg--------------------------~~~~ 222 (432)
T d1qksa2 178 IVNVKETGKILLVDYTDL---------NNLKTTEISAERFLHDGGLDGSH--------------------------RYFI 222 (432)
T ss_dssp EEEETTTTEEEEEETTCS---------SEEEEEEEECCSSEEEEEECTTS--------------------------CEEE
T ss_pred EEEECCCCEEEEEECCCC---------CCCEEEEECCCCCCCCCEECCCC--------------------------CEEE
T ss_conf 999816882999984378---------75227998336754265388988--------------------------7999
Q ss_pred EEE-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEE-CCCE
Q ss_conf 994-89809999368888885322211112457999999999999999511269999801999857998999996-7982
Q 000270 486 TCS-RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI-MDCR 563 (1749)
Q Consensus 486 SgS-~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIafSPDG~~LASgs-~DGt 563 (1749)
+++ .++.+.+++..+.+....... .....+........+...+...++.. .++.
T Consensus 223 va~~~~~~v~v~d~~~~~~~~~~~~------------------------g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~ 278 (432)
T d1qksa2 223 TAANARNKLVVIDTKEGKLVAIEDT------------------------GGQTPHPGRGANFVHPTFGPVWATSHMGDDS 278 (432)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEEC------------------------SSSSBCCTTCEEEEETTTEEEEEEEBSSSSE
T ss_pred EECCCCCEEEEEECCCCEEEEEECC------------------------CCCCCCCCCCCCEECCCCCCEECCCCCCCCE
T ss_conf 9516663677761445268887214------------------------8622456766410148988310213568835
Q ss_pred EEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCCCCEEEEEE-EEECCCCCEEEEECCCCEEE
Q ss_conf 99998999955897128998839999948999489999479909999589992389986-00026999999990898199
Q 000270 564 ICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE-ISRFRDGASIILSDDVGQLY 642 (1749)
Q Consensus 564 I~IWDl~tgkli~tL~gHs~~VtsIafSP~d~rlLvSas~DGtIrIWDi~tG~~l~tl~-~~~fsDG~~LAsgs~DG~I~ 642 (1749)
|.+|+..... +..|...+....++| ++..+++++.+...++|...+........ .-.++|+..|++++.|+.+.
T Consensus 279 v~~~~~~~~~----~~~~~~~v~~~~~~~-~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k 353 (432)
T d1qksa2 279 VALIGTDPEG----HPDNAWKILDSFPAL-GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFK 353 (432)
T ss_dssp EEEEECCTTT----CTTTBTSEEEEEECS-CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEE
T ss_pred EEECCCCCCC----CCCCCCEEEEEEECC-CCCEEEEEECCCCCCEEECCCCCCCCCEEEEEEEEECHHHCCCCCCCCEE
T ss_conf 8762456655----546565777998868-99768887268864102112678887703599999624610455678448
Q ss_pred EEECCCCCCCCCC---CCEEEECCCCCCE
Q ss_conf 9988998422354---2102331897544
Q 000270 643 ILNTGQGESQKDA---KYDQFFLGDYRPL 668 (1749)
Q Consensus 643 Iwdl~sGe~~k~~---~~~~fFs~D~~~L 668 (1749)
+|++.++..+... .....|++|++.+
T Consensus 354 ~w~~~~~~~l~~~~~~v~~~~fS~DG~~v 382 (432)
T d1qksa2 354 TLPIAEWAGITEGQPRVVQGEFNKDGTEV 382 (432)
T ss_dssp EECHHHHHTCCSSCCEEEEEEECTTSSEE
T ss_pred ECCCCCCCCCCCCCCCEEEEEECCCCCEE
T ss_conf 63343444457899868976798999999
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.94 E-value=2.2e-24 Score=175.83 Aligned_cols=311 Identities=8% Similarity=-0.014 Sum_probs=200.2
Q ss_pred EEECCCCCEEEEEECCCEEEEEECCCCEEEEEEC-CCCCCEEEEEECCCCCEE-EEEECCCEEEEEECCCCCEEEEECCC
Q ss_conf 9997999999997087489999778980899971-678985999996899679-99838990999988999528996077
Q 000270 249 AIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVSSNNALV-ASASNDCIIRVWRLPDGLPISVLRGH 326 (1749)
Q Consensus 249 IaFSpDG~~LATGS~DGtIkIWDl~Tg~~i~tL~-gHs~~VtsLafSPDg~lL-ASGS~DGtIrIWDl~tgk~i~tL~gH 326 (1749)
++|++++++|++++.++.|.|||+.+++++.++. .+...+.+++|+||++++ ++++.++.|.+||+.+++.+..+...
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred CCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCC
T ss_conf 55889996999986999799999999989999994899970459997898999999789993999967567131231036
Q ss_pred C------CCEEEEEECCCCCCCEEEEEEC------------CCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 8------8559999526999624899632------------899099997688955452513799973348777888889
Q 000270 327 T------AAVTAIAFSPRPGSVYQLLSSS------------DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 388 (1749)
Q Consensus 327 s------~~VtsIaFSPdg~~~~~LvSgS------------~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~ 388 (1749)
. ..+..++|+||++ +++++. .++.+.+|+..++.....+...
T Consensus 82 ~~~~~~~~~~~~v~~s~DG~---~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------------- 141 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPDGK---EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF----------------- 141 (346)
T ss_dssp CSTTEEEECSSCEEECTTSS---EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-----------------
T ss_pred CCCCCCCCCEEEEEEECCCC---EEEEEECCCCCEEEEECCCCCEEEEEECCCCEEEEEEEEE-----------------
T ss_conf 54345477417999905888---8999705775215651467624899852563265688731-----------------
Q ss_pred CCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99997427999847998999941898099993899999899999851243127899827999827872222333468778
Q 000270 389 GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 468 (1749)
Q Consensus 389 ~~h~~~V~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~ 468 (1749)
.....+..+.+++++.+++.+ +.+.+|++.++ ..+..+..+ .....+.+++++.............
T Consensus 142 -~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (346)
T d1jmxb_ 142 -PMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTG---------KYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEF 207 (346)
T ss_dssp -ECCSSCCCEEECTTSCEEEES---SSEEEECTTTC---------CEEEEECST-TCCCTTBCCCBCCCCCCCCCTTCEE
T ss_pred -ECCCCEEEEEECCCCEEEEEC---CCCEEEECCCC---------CEEEEEECC-CCCCCEEEECCCCEEEEEECCCCCE
T ss_conf -024743999952787899847---96269980699---------789999648-9866237712552899986499816
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 88875556555799899994898099993688888853222111124579999999999999995112699998019998
Q 000270 469 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 548 (1749)
Q Consensus 469 ~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIaf 548 (1749)
...............++++..++.+.+|+..++.. ......++...+..+.+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~ 259 (346)
T d1jmxb_ 208 SMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKT----------------------------HTQEFADLTELYFTGLR 259 (346)
T ss_dssp EEEEEEEEC-------CCCEEEEEEEEEETTTCCE----------------------------EEEEEEECSSCEEEEEE
T ss_pred EEEEEEEEECCCCEEEEECCCCCEEEEEECCCCCE----------------------------EEEEEECCCCEEEEEEE
T ss_conf 76512311126732575404783499997778836----------------------------87876315660688897
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEE
Q ss_conf 5799899999679829999899995589712899883999994899948999947990999958999238998600
Q 000270 549 SLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS 624 (1749)
Q Consensus 549 SPDG~~LASgs~DGtI~IWDl~tgkli~tL~gHs~~VtsIafSP~d~rlLvSas~DGtIrIWDi~tG~~l~tl~~~ 624 (1749)
++++.+++.+.. +.|.+||..+++.+..+. +...+.+++|+| +++.|++++.|+.|++||+.+++.+.++...
T Consensus 260 ~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~-DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p 332 (346)
T d1jmxb_ 260 SPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN-LDHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 332 (346)
T ss_dssp CSSCTTEEEEEE-SEEEEEETTTTEEEEEEE-CSSCCCEEEECS-SSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred ECCCCEEEEECC-CEEEEEECCCCCEEEEEC-CCCCEEEEEECC-CCCEEEEEECCCCEEEEECCCCCEEEEEECC
T ss_conf 179978999429-838999899993999974-999778999968-9999999948992999999658797999889
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.94 E-value=4.9e-23 Score=166.77 Aligned_cols=298 Identities=10% Similarity=-0.006 Sum_probs=197.6
Q ss_pred CEEEEEECCCEEEEEECCCCEEEEEECC--CCCCEEEEEECCCCCEE-EEEECCCEEEEEECCCCCEEEEECCCCC----
Q ss_conf 9999970874899997789808999716--78985999996899679-9983899099998899952899607788----
Q 000270 256 RYVITGSDDRLVKIWSMETAYCLASCRG--HEGDITDLAVSSNNALV-ASASNDCIIRVWRLPDGLPISVLRGHTA---- 328 (1749)
Q Consensus 256 ~~LATGS~DGtIkIWDl~Tg~~i~tL~g--Hs~~VtsLafSPDg~lL-ASGS~DGtIrIWDl~tgk~i~tL~gHs~---- 328 (1749)
.|+++++.|++|.|||+.+++++.++.. +...+.+++|+|||++| ++++.++.|.+||+.+++.+..+..+..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred EEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCC
T ss_conf 69999767998999999999499999877889982379999998999999789994999999999298887247773125
Q ss_pred -CEEEEEECCCCCCCEEEEEEC------------CCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf -559999526999624899632------------8990999976889554525137999733487778888899999742
Q 000270 329 -AVTAIAFSPRPGSVYQLLSSS------------DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395 (1749)
Q Consensus 329 -~VtsIaFSPdg~~~~~LvSgS------------~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V 395 (1749)
.+..++|+|+++ .++++. .+..+.+||..++.....+. ....+
T Consensus 82 ~~~~~v~~s~dg~---~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---------------------~~~~~ 137 (337)
T d1pbyb_ 82 KSLFGAALSPDGK---TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE---------------------APRQI 137 (337)
T ss_dssp ECTTCEEECTTSS---EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE---------------------CCSSC
T ss_pred CCEEEEEECCCCC---EEEEEECCCCCEEEECCCCCCCEEECCCCCCEEEEECC---------------------CCCCC
T ss_conf 4025489868775---79995047762034203455521203566775988414---------------------56872
Q ss_pred EEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79998479989999418980999938999998999998512431278998279998278722223334687788887555
Q 000270 396 FCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475 (1749)
Q Consensus 396 ~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~ 475 (1749)
.+++|+++|.++++++. .+.+|+..++ .....+..+... ....+.+++............ .......
T Consensus 138 ~~~~~s~dg~~l~~~~~--~~~~~d~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 204 (337)
T d1pbyb_ 138 TMLAWARDGSKLYGLGR--DLHVMDPEAG---------TLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGV-MATPFYT 204 (337)
T ss_dssp CCEEECTTSSCEEEESS--SEEEEETTTT---------EEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTE-EEEEEEE
T ss_pred EEEEECCCCCEEEEECC--CCCEEEEECC---------CEEEEEECCCCC-CCCEECCCCCEEECCCCCCCE-EEEEEEE
T ss_conf 18998688888999717--7505663037---------278886147754-331135776314014665312-4663244
Q ss_pred CCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEE
Q ss_conf 65557998999948980999936888888532221111245799999999999999951126999980199985799899
Q 000270 476 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFV 555 (1749)
Q Consensus 476 ~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIafSPDG~~L 555 (1749)
.. .....+.....++.+.+|+..++... ...+..+...+..+++++++.++
T Consensus 205 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 255 (337)
T d1pbyb_ 205 AR-KDIDPADPTAYRTGLLTMDLETGEMA----------------------------MREVRIMDVFYFSTAVNPAKTRA 255 (337)
T ss_dssp EB-TTSCTTSGGGEEEEEEEEETTTCCEE----------------------------EEEEEECSSCEEEEEECTTSSEE
T ss_pred EE-ECCCEEEECCCCCCEEEEECCCCCEE----------------------------EEEECCCCCCEEEEEECCCCEEE
T ss_conf 41-03660454036761799986888588----------------------------89832887505888742661399
Q ss_pred EEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCCCCEEEEEEE
Q ss_conf 99967982999989999558971289988399999489994899994799099995899923899860
Q 000270 556 LAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEI 623 (1749)
Q Consensus 556 ASgs~DGtI~IWDl~tgkli~tL~gHs~~VtsIafSP~d~rlLvSas~DGtIrIWDi~tG~~l~tl~~ 623 (1749)
+.+ ++.|++||+.+++.+..+. +...+.+++|+| ++++|++++.|+.|++||+.+++.+.++..
T Consensus 256 ~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 256 FGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp EEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred EEC--CCCEEEEECCCCCEEEEEC-CCCCEEEEEECC-CCCEEEEEECCCCEEEEECCCCCEEEEEEC
T ss_conf 973--5528999898896999974-899889999978-999999994999299999998769899988
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.94 E-value=9.8e-22 Score=157.93 Aligned_cols=304 Identities=11% Similarity=-0.031 Sum_probs=204.5
Q ss_pred ECCCCCCEEEEEECCCCCEEEEE-----ECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEE---------
Q ss_conf 70689877999997999999997-----0874899997789808999716789859999968996799983---------
Q 000270 239 VRGHRNAVYCAIFDRSGRYVITG-----SDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS--------- 304 (1749)
Q Consensus 239 L~GH~~~VtsIaFSpDG~~LATG-----S~DGtIkIWDl~Tg~~i~tL~gHs~~VtsLafSPDg~lLASGS--------- 304 (1749)
..++..++.+++++|||+.++.. +..+.|.+||..+++.+.++..+... .++|+|||++|++++
T Consensus 16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~ 93 (373)
T d2madh_ 16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKG 93 (373)
T ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCCEEEEEEECCCCCCCC
T ss_conf 456789865630189997899973422578765999989999799999579886--079868999899996057753212
Q ss_pred -CCCEEEEEECCCCCEEEEECCCCCCE-------EEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCCCC
Q ss_conf -89909999889995289960778855-------9999526999624899632899099997688955452513799973
Q 000270 305 -NDCIIRVWRLPDGLPISVLRGHTAAV-------TAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDA 376 (1749)
Q Consensus 305 -~DGtIrIWDl~tgk~i~tL~gHs~~V-------tsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~~ 376 (1749)
.++.|.+||+.+++.+..+..+.... ..+.|+++++.. +++....++.+.+|+....+.....
T Consensus 94 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~-~v~~~~~~~~~~~~~~~~~~~~~~~-------- 164 (373)
T d2madh_ 94 KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADL-LFFQFAAGPAVGLVVQGGSSDDQLL-------- 164 (373)
T ss_pred CCCEEEEEEECCCCCEEEEEECCCCCEEEECCCCCCEEEEECCCCE-EEEEECCCCCEEEEECCCCEEEEEE--------
T ss_conf 4531899997778938889726885136851689708998589937-9999869874677623687289982--------
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCCCE-EEEECCCCCEEEEECCCCCCCCCCCCCCCEEEECC------CCCCEEEE
Q ss_conf 348777888889999974279998479989-99941898099993899999899999851243127------89982799
Q 000270 377 VAGRNMAPSSSAGPQSHQIFCCAFNANGTV-FVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG------HENDVNYV 449 (1749)
Q Consensus 377 ~sg~~~~~~~s~~~h~~~V~sIafSPDG~~-LasGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l~g------H~~~V~sI 449 (1749)
....++.|+++|.. +++.+.|+.+.+|+...... ...... .......+
T Consensus 165 ----------------~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 219 (373)
T d2madh_ 165 ----------------SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAA---------GAGLVGAMLTAAQNLLTQPA 219 (373)
T ss_pred ----------------CCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEE---------EEEEEEECCCCCCCCEEEEE
T ss_conf ----------------45206999628991999994799399997477426---------67886300366753043458
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98278722223334687788887555655579989999489809999368888885322211112457999999999999
Q 000270 450 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR 529 (1749)
Q Consensus 450 afSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~ 529 (1749)
.+.++ ..++..+.++.+.+|+...............
T Consensus 220 ~~~~~---------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----------------- 255 (373)
T d2madh_ 220 QANKS---------------------------GRIVWPVYSGKILQADISAAGATNKAPIDAL----------------- 255 (373)
T ss_pred EECCC---------------------------CEEEEECCCCEEEEEECCCCEEEEEEEECCC-----------------
T ss_conf 87899---------------------------4299925896599997689907897763056-----------------
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCC----------EEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCC-EE
Q ss_conf 999511269999801999857998----------9999967982999989999558971289988399999489994-89
Q 000270 530 GGPRQRILPTPRGVNMIVWSLDNR----------FVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR-IA 598 (1749)
Q Consensus 530 g~~i~~l~~h~~~VtsIafSPDG~----------~LASgs~DGtI~IWDl~tgkli~tL~gHs~~VtsIafSP~d~r-lL 598 (1749)
................+++++++. .+++...++.|.+||..+++.+..+. +...+..++|+|++.. ++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~ 334 (373)
T d2madh_ 256 SGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLY 334 (373)
T ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEEC-CCCCEEEEEECCCCCEEEE
T ss_conf 475786641367413357714997599954888247862589869999899996989866-8998258999989998999
Q ss_pred EEEECCCCEEEEECCCCCEEEEEEE
Q ss_conf 9994799099995899923899860
Q 000270 599 MSAGYDGKTIVWDIWEGIPIRIYEI 623 (1749)
Q Consensus 599 vSas~DGtIrIWDi~tG~~l~tl~~ 623 (1749)
++++.|+.|++||+.+|+.++++..
T Consensus 335 vt~~~d~~v~v~D~~tg~~~~~~~~ 359 (373)
T d2madh_ 335 ALSAGTEVLHIYDAGAGDQDQSTVE 359 (373)
T ss_pred EEECCCCEEEEEECCCCCEEEEECC
T ss_conf 9967999299999999989999888
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.93 E-value=5.7e-21 Score=152.77 Aligned_cols=262 Identities=13% Similarity=0.097 Sum_probs=181.0
Q ss_pred CCCCCCCCEEEEECCCCCCEEEEEECCCCCEEE-EEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEE-EEE
Q ss_conf 722234403799706898779999979999999-970874899997789808999716789859999968996799-983
Q 000270 227 STMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVI-TGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVA-SAS 304 (1749)
Q Consensus 227 s~~~~t~~~i~tL~GH~~~VtsIaFSpDG~~LA-TGS~DGtIkIWDl~Tg~~i~tL~gHs~~VtsLafSPDg~lLA-SGS 304 (1749)
.+...+++.++++... ..+..++|+|||++|+ +++.++.|++||+.+++.+.++..+. .+..++|++++..++ ++.
T Consensus 16 v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 93 (301)
T d1l0qa2 16 VIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNM 93 (301)
T ss_dssp EEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEET
T ss_pred EEECCCCEEEEEEECC-CCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECCC-CCCCCCCCCCCCCCCCCCC
T ss_conf 9999999599999889-9836999928989999997899989999999894103200024-6431100011111111111
Q ss_pred CCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 89909999889995289960778855999952699962489963289909999768895545251379997334877788
Q 000270 305 NDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 384 (1749)
Q Consensus 305 ~DGtIrIWDl~tgk~i~tL~gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~ 384 (1749)
.++.+.+|+..+++.+..+.. .....++.|+|++. ..++++..++.+.+|+..+......+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 155 (301)
T d1l0qa2 94 ASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGK--KLYVTNNGDKTVSVINTVTKAVINTVS--------------- 155 (301)
T ss_dssp TTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSS--EEEEEETTTTEEEEEETTTTEEEEEEE---------------
T ss_pred CCCEEEECCCCCCEEEEECCC-CCCCEEEEEECCCC--EEEEEECCCCCEEEEECCCCCEEEECC---------------
T ss_conf 110011001243024320244-44423787605897--155420111100110001463035315---------------
Q ss_pred CCCCCCCCCCEEEEEECCCCCEEEEECCC-CCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 88899999742799984799899994189-80999938999998999998512431278998279998278722223334
Q 000270 385 SSSAGPQSHQIFCCAFNANGTVFVTGSSD-TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLA 463 (1749)
Q Consensus 385 ~~s~~~h~~~V~sIafSPDG~~LasGS~D-GtIrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~ 463 (1749)
....+.++++++++..++++..+ +.+.+|.... ...... ......+..+.|++++
T Consensus 156 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~~~~~~~~~~g-------- 211 (301)
T d1l0qa2 156 ------VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT---------NSVIDT-VKVEAAPSGIAVNPEG-------- 211 (301)
T ss_dssp ------CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT---------TEEEEE-EECSSEEEEEEECTTS--------
T ss_pred ------CCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCC---------EEEEEC-CCCCCCCCEEECCCCC--------
T ss_conf ------6788428886046540131012111111111110---------001110-1335775031101111--------
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEE---CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6877888875556555799899994---8980999936888888532221111245799999999999999951126999
Q 000270 464 DSSKEDSTPKFKNSWFCHDNIVTCS---RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP 540 (1749)
Q Consensus 464 ~~~~~~~~~~~~~s~~~~~~LvSgS---~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~ 540 (1749)
..++.++ .++.|.+||+.+++... . ....
T Consensus 212 ------------------~~~~v~~~~~~~~~v~v~D~~t~~~~~-----------------------------~-~~~~ 243 (301)
T d1l0qa2 212 ------------------TKAYVTNVDKYFNTVSMIDTGTNKITA-----------------------------R-IPVG 243 (301)
T ss_dssp ------------------SEEEEEEECSSCCEEEEEETTTTEEEE-----------------------------E-EECC
T ss_pred ------------------CCCCCCCCCCEEEEEEEEECCCCEEEE-----------------------------E-ECCC
T ss_conf ------------------011110021000023236569981999-----------------------------9-8489
Q ss_pred CCEEEEEECCCCCEE-EEEECCCEEEEEECCCCCEEEEECC
Q ss_conf 980199985799899-9996798299998999955897128
Q 000270 541 RGVNMIVWSLDNRFV-LAAIMDCRICVWNAADGSLVHSLTG 580 (1749)
Q Consensus 541 ~~VtsIafSPDG~~L-ASgs~DGtI~IWDl~tgkli~tL~g 580 (1749)
..+..++|+|||++| ++++.++.|.+||+.+++++.++..
T Consensus 244 ~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 244 PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV 284 (301)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEEECCCCEEEEEECCCCEEEEEECCCCEEEEEEEC
T ss_conf 98779999189899999989999699999999959999968
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.91 E-value=1.9e-20 Score=149.15 Aligned_cols=290 Identities=11% Similarity=0.065 Sum_probs=140.8
Q ss_pred CEEEEEECCCEEEEEECCCCCEEEEECC--CCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCCC
Q ss_conf 6799983899099998899952899607--78855999952699962489963289909999768895545251379997
Q 000270 298 ALVASASNDCIIRVWRLPDGLPISVLRG--HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSD 375 (1749)
Q Consensus 298 ~lLASGS~DGtIrIWDl~tgk~i~tL~g--Hs~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~ 375 (1749)
.+|++++.|+.|.|||+.+++.+..+.. +...+.+++|+||++ +++++++.++.|.+||+.+++.+..+......
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~--~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~- 78 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGR--IAYATVNKSESLVKIDLVTGETLGRIDLSTPE- 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSS--EEEEEETTTTEEEEEETTTCCEEEEEECCBTT-
T ss_pred EEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCC--EEEEEECCCCEEEEEECCCCCEEEEEECCCCC-
T ss_conf 699997679989999999994999998778899823799999989--99999789994999999999298887247773-
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECC------------CCCEEEEECCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 3348777888889999974279998479989999418------------9809999389999989999985124312789
Q 000270 376 AVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS------------DTLARVWNACKPNTDDSDQPNHEIDVLSGHE 443 (1749)
Q Consensus 376 ~~sg~~~~~~~s~~~h~~~V~sIafSPDG~~LasGS~------------DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH~ 443 (1749)
.+...+..++|+|++..++++.. +..+.+|+..+ ......+. +.
T Consensus 79 --------------~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~---------~~~~~~~~-~~ 134 (337)
T d1pbyb_ 79 --------------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET---------LSRRKAFE-AP 134 (337)
T ss_dssp --------------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT---------TEEEEEEE-CC
T ss_pred --------------CCCCCEEEEEECCCCCEEEEEECCCCCEEEECCCCCCCEEECCCCC---------CEEEEECC-CC
T ss_conf --------------1254025489868775799950477620342034555212035667---------75988414-56
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98279998278722223334687788887555655579989999489809999368888885322211112457999999
Q 000270 444 NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPM 523 (1749)
Q Consensus 444 ~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~ 523 (1749)
..+..+.|++++ .++++++. .+.+|+..+++.................
T Consensus 135 ~~~~~~~~s~dg--------------------------~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~---- 182 (337)
T d1pbyb_ 135 RQITMLAWARDG--------------------------SKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQ---- 182 (337)
T ss_dssp SSCCCEEECTTS--------------------------SCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCC----
T ss_pred CCCEEEEECCCC--------------------------CEEEEECC--CCCEEEEECCCEEEEEECCCCCCCCEEC----
T ss_conf 872189986888--------------------------88999717--7505663037278886147754331135----
Q ss_pred CCCCCCCCCCCCCCCCCCC---EEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE-EECCCCCCEEEEEECCCCCCEEE
Q ss_conf 9999999995112699998---0199985799899999679829999899995589-71289988399999489994899
Q 000270 524 PPQPPRGGPRQRILPTPRG---VNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVH-SLTGHTESTYVLDVHPFNPRIAM 599 (1749)
Q Consensus 524 ~~~~~~g~~i~~l~~h~~~---VtsIafSPDG~~LASgs~DGtI~IWDl~tgkli~-tL~gHs~~VtsIafSP~d~rlLv 599 (1749)
..+... ........ +.......+...+..+..++.+.+|+..++.... .+..+...+..+.+++ ++.+++
T Consensus 183 ----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 256 (337)
T d1pbyb_ 183 ----PDVLAV-WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP-AKTRAF 256 (337)
T ss_dssp ----CBCCCC-CCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT-TSSEEE
T ss_pred ----CCCCEE-ECCCCCCCEEEEEEEEEEECCCEEEECCCCCCEEEEECCCCCEEEEEECCCCCCEEEEEECC-CCEEEE
T ss_conf ----776314-01466531246632444103660454036761799986888588898328875058887426-613999
Q ss_pred EEECCCCEEEEECCCCCEEEEEEEE-------ECCCCCEEEEECCCCEEEEEECCCCCCCCC
Q ss_conf 9947990999958999238998600-------026999999990898199998899842235
Q 000270 600 SAGYDGKTIVWDIWEGIPIRIYEIS-------RFRDGASIILSDDVGQLYILNTGQGESQKD 654 (1749)
Q Consensus 600 Sas~DGtIrIWDi~tG~~l~tl~~~-------~fsDG~~LAsgs~DG~I~Iwdl~sGe~~k~ 654 (1749)
.+ ++.|++||+.+++.+..+..+ ..+||++|++++.+|.|.|||+.+++..+.
T Consensus 257 ~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~ 316 (337)
T d1pbyb_ 257 GA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ 316 (337)
T ss_dssp EE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEE
T ss_pred EC--CCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEE
T ss_conf 73--5528999898896999974899889999978999999994999299999998769899
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.90 E-value=2.1e-20 Score=148.91 Aligned_cols=301 Identities=9% Similarity=0.016 Sum_probs=195.6
Q ss_pred EEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC-CCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEE
Q ss_conf 9996899679998389909999889995289960-778855999952699962489963289909999768895545251
Q 000270 291 LAVSSNNALVASASNDCIIRVWRLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIY 369 (1749)
Q Consensus 291 LafSPDg~lLASGS~DGtIrIWDl~tgk~i~tL~-gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~ 369 (1749)
++|++++++|++++.++.|.+||+.+++.+.++. .+...+.+++|+||++ +.++++..++.|.+||+.+++....+.
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~--~l~v~~~~~~~v~~~d~~t~~~~~~~~ 79 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNR--TAYVLNNHYGDIYGIDLDTCKNTFHAN 79 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSS--EEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred CCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCEEEECCCCC--EEEEEECCCCCEEEEECCCCEEEEEEC
T ss_conf 558899969999869997999999999899999948999704599978989--999997899939999675671312310
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEC------------CCCCEEEEECCCCCCCCCCCCCCCEE
Q ss_conf 379997334877788888999997427999847998999941------------89809999389999989999985124
Q 000270 370 IPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS------------SDTLARVWNACKPNTDDSDQPNHEID 437 (1749)
Q Consensus 370 i~~~~~~~sg~~~~~~~s~~~h~~~V~sIafSPDG~~LasGS------------~DGtIrIWDl~t~~~~~s~q~~~~i~ 437 (1749)
..... ......+..++|+|||.++++++ .++.+.+|+..++. ...
T Consensus 80 ~~~~~--------------~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~~ 136 (346)
T d1jmxb_ 80 LSSVP--------------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL---------EAK 136 (346)
T ss_dssp SCCST--------------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG---------GBC
T ss_pred CCCCC--------------CCCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCE---------EEE
T ss_conf 36543--------------4547741799990588889997057752156514676248998525632---------656
Q ss_pred EEC--CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 312--789982799982787222233346877888875556555799899994898099993688888853222111124
Q 000270 438 VLS--GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYH 515 (1749)
Q Consensus 438 ~l~--gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~ 515 (1749)
.+. .....+..+.+++++ .++.. ++.+.+|++.+++.............
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (346)
T d1jmxb_ 137 PVRTFPMPRQVYLMRAADDG---------------------------SLYVA--GPDIYKMDVKTGKYTVALPLRNWNRK 187 (346)
T ss_dssp CSEEEECCSSCCCEEECTTS---------------------------CEEEE--SSSEEEECTTTCCEEEEECSTTCCCT
T ss_pred EEEEEECCCCEEEEEECCCC---------------------------EEEEE--CCCCEEEECCCCCEEEEEECCCCCCC
T ss_conf 88731024743999952787---------------------------89984--79626998069978999964898662
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCE----EEEEECCCCCEEEEEECCCEEEEEECCCCCEEE-EECCCCCCEEEEEE
Q ss_conf 5799999999999999951126999980----199985799899999679829999899995589-71289988399999
Q 000270 516 LKVPPPPMPPQPPRGGPRQRILPTPRGV----NMIVWSLDNRFVLAAIMDCRICVWNAADGSLVH-SLTGHTESTYVLDV 590 (1749)
Q Consensus 516 l~v~~~~~~~~~~~g~~i~~l~~h~~~V----tsIafSPDG~~LASgs~DGtI~IWDl~tgkli~-tL~gHs~~VtsIaf 590 (1749)
....+ .+............+ ....+......++++..+..+.+|+..++.... .+..+...+..+.+
T Consensus 188 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (346)
T d1jmxb_ 188 GYSAP--------DVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLR 259 (346)
T ss_dssp TBCCC--------BCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEE
T ss_pred EEEEC--------CCCEEEEEECCCCCEEEEEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEE
T ss_conf 37712--------5528999864998167651231112673257540478349999777883687876315660688897
Q ss_pred CCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEE-------ECCCCCEEEEECCCCEEEEEECCCCCCCCCC
Q ss_conf 4899948999947990999958999238998600-------0269999999908981999988998422354
Q 000270 591 HPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS-------RFRDGASIILSDDVGQLYILNTGQGESQKDA 655 (1749)
Q Consensus 591 SP~d~rlLvSas~DGtIrIWDi~tG~~l~tl~~~-------~fsDG~~LAsgs~DG~I~Iwdl~sGe~~k~~ 655 (1749)
++.+..+ +... ++.|.+||+.+++.+..+..+ ..+||++|++++.+|.|.|||..+++.+...
T Consensus 260 ~~~~~~~-~~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i 329 (346)
T d1jmxb_ 260 SPKDPNQ-IYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNI 329 (346)
T ss_dssp CSSCTTE-EEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred ECCCCEE-EEEC-CCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEE
T ss_conf 1799789-9942-98389998999939999749997789999689999999948992999999658797999
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.89 E-value=1e-20 Score=151.09 Aligned_cols=302 Identities=12% Similarity=0.017 Sum_probs=198.0
Q ss_pred EEEEEECCCCCEEEEEE-----CCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEE----------CCCEEE
Q ss_conf 79999979999999970-----874899997789808999716789859999968996799983----------899099
Q 000270 246 VYCAIFDRSGRYVITGS-----DDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS----------NDCIIR 310 (1749)
Q Consensus 246 VtsIaFSpDG~~LATGS-----~DGtIkIWDl~Tg~~i~tL~gHs~~VtsLafSPDg~lLASGS----------~DGtIr 310 (1749)
+.-.+.+|||++++... .+..|.+||..+++.+.++..+... .++|+||+++|++.+ .++.|+
T Consensus 4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~ 81 (355)
T d2bbkh_ 4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVE 81 (355)
T ss_dssp CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred CEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCCEEEEEECCCCCCCCCCCCCEEE
T ss_conf 17476589999999982664777671999999999499999899998--5699489999999967776420158999899
Q ss_pred EEECCCCCEEEEECCCCC-------CEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 998899952899607788-------5599995269996248996328990999976889554525137999733487778
Q 000270 311 VWRLPDGLPISVLRGHTA-------AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMA 383 (1749)
Q Consensus 311 IWDl~tgk~i~tL~gHs~-------~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~ 383 (1749)
+||+.+++.+..+..+.. ....++|+++++.. +++..+.+..+.+|+..++.....+..+......
T Consensus 82 v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 154 (355)
T d2bbkh_ 82 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTL-LFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIF------ 154 (355)
T ss_dssp EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEE-EEEECSSSCEEEEEETTTTEEEEEEECCSEEEEE------
T ss_pred EEECCCCCEEEEEECCCCCEEECCCCCCEEEEECCCCEE-EEECCCCCCEEEEEECCCCCEEEEEECCCCCEEE------
T ss_conf 999999979889805886403117987349993388715-7732798820454305788376677058740473------
Q ss_pred CCCCCCCCCCCEEEEEECCCCCEEEEEC-CCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 8888999997427999847998999941-898099993899999899999851243127899827999827872222333
Q 000270 384 PSSSAGPQSHQIFCCAFNANGTVFVTGS-SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSL 462 (1749)
Q Consensus 384 ~~~s~~~h~~~V~sIafSPDG~~LasGS-~DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~ 462 (1749)
.......+.+++++..+++.. .++.+.+++..... ..+...+....+.+.+
T Consensus 155 -------~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~------- 206 (355)
T d2bbkh_ 155 -------PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH--------------PEDEFLINHPAYSQKA------- 206 (355)
T ss_dssp -------EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS--------------CTTSCBCSCCEEETTT-------
T ss_pred -------ECCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCC--------------CEECCEEEECCCCCCC-------
T ss_conf -------069963699938999899983478737999624333--------------0001106102153899-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCC
Q ss_conf 46877888875556555799899994898099993688888853222111124579999999999999995--1126999
Q 000270 463 ADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR--QRILPTP 540 (1749)
Q Consensus 463 ~~~~~~~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i--~~l~~h~ 540 (1749)
..++.++.++.+.+|++..+......... .... .......
T Consensus 207 -------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~p 248 (355)
T d2bbkh_ 207 -------------------GRLVWPTYTGKIHQIDLSSGDAKFLPAVE-------------------ALTEAERADGWRP 248 (355)
T ss_dssp -------------------TEEEEEBTTSEEEEEECTTSSCEECCCEE-------------------SSCHHHHHTTEEE
T ss_pred -------------------CEEEEECCCCEEEEEECCCCCEEEEECCC-------------------CCCCCEEEEEEEC
T ss_conf -------------------73887469982999965899079984457-------------------8441268543303
Q ss_pred CCEEEEEECCCCCEEEEEECC----------CEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCC-EEEEEECCCCEEE
Q ss_conf 980199985799899999679----------82999989999558971289988399999489994-8999947990999
Q 000270 541 RGVNMIVWSLDNRFVLAAIMD----------CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR-IAMSAGYDGKTIV 609 (1749)
Q Consensus 541 ~~VtsIafSPDG~~LASgs~D----------GtI~IWDl~tgkli~tL~gHs~~VtsIafSP~d~r-lLvSas~DGtIrI 609 (1749)
.+...+++++++..++....+ ..|.+||..+++.+..+..+ ..+.+++|+|++.. ++++++.|+.|.+
T Consensus 249 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~-~~~~~~a~spDG~~~l~v~~~~d~~i~v 327 (355)
T d2bbkh_ 249 GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYI 327 (355)
T ss_dssp CSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEE
T ss_pred CCEEEEEEECCCCEEEEEECCCCCEEECCCCCEEEEEECCCCCEEEEECCC-CCEEEEEECCCCCEEEEEEECCCCEEEE
T ss_conf 510899980799767887406871265179975999867888498996689-9877999928999699999789998999
Q ss_pred EECCCCCEEEEEEE
Q ss_conf 95899923899860
Q 000270 610 WDIWEGIPIRIYEI 623 (1749)
Q Consensus 610 WDi~tG~~l~tl~~ 623 (1749)
||+.+|+.++++..
T Consensus 328 ~D~~tg~~~~~i~~ 341 (355)
T d2bbkh_ 328 HDAESGEELRSVNQ 341 (355)
T ss_dssp EETTTCCEEEEECC
T ss_pred EECCCCCEEEEEEC
T ss_conf 99999989999928
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=1.1e-18 Score=137.40 Aligned_cols=294 Identities=10% Similarity=0.098 Sum_probs=184.0
Q ss_pred EEEEEECCCEEEEEECCCCEEEEE--ECCCCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCCEEEEE---CCCCCCE
Q ss_conf 999970874899997789808999--716789859999968996799983-8990999988999528996---0778855
Q 000270 257 YVITGSDDRLVKIWSMETAYCLAS--CRGHEGDITDLAVSSNNALVASAS-NDCIIRVWRLPDGLPISVL---RGHTAAV 330 (1749)
Q Consensus 257 ~LATGS~DGtIkIWDl~Tg~~i~t--L~gHs~~VtsLafSPDg~lLASGS-~DGtIrIWDl~tgk~i~tL---~gHs~~V 330 (1749)
.+++++.|++|+||++.+...+.. ...|.+.+..|+|+|||++|++++ .|+.|++|++........+ ..+...+
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p 85 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 85 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCC
T ss_conf 99987899938999983999769999975799886899958979999997789969999996898707985301369985
Q ss_pred EEEEECCCCCCCEEEEEEC-CCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEE
Q ss_conf 9999526999624899632-899099997688955452513799973348777888889999974279998479989999
Q 000270 331 TAIAFSPRPGSVYQLLSSS-DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 409 (1749)
Q Consensus 331 tsIaFSPdg~~~~~LvSgS-~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V~sIafSPDG~~Las 409 (1749)
..++|+|+++ +|++++ .++.|.+|+............ ..+...+.++.|+|+++.+++
T Consensus 86 ~~l~~spDg~---~l~v~~~~~~~v~~~~~~~~~~~~~~~~------------------~~~~~~~~~v~~s~d~~~~~~ 144 (333)
T d1ri6a_ 86 THISTDHQGQ---FVFVGSYNAGNVSVTRLEDGLPVGVVDV------------------VEGLDGCHSANISPDNRTLWV 144 (333)
T ss_dssp SEEEECTTSS---EEEEEETTTTEEEEEEEETTEEEEEEEE------------------ECCCTTBCCCEECTTSSEEEE
T ss_pred EEEEECCCCC---EEEECCCCCCCEEEECCCCCCCEECCCC------------------CCCCCCCEEEEEEECCEEEEC
T ss_conf 4999959998---8742056888302200111000000100------------------377853149886301013102
Q ss_pred ECC-CCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE-EEEE
Q ss_conf 418-98099993899999899999851243127899827999827872222333468778888755565557998-9999
Q 000270 410 GSS-DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDN-IVTC 487 (1749)
Q Consensus 410 GS~-DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~-LvSg 487 (1749)
++. +..|.+|+........ .................+.|++++ .. +++.
T Consensus 145 ~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~g~~p~~i~~~~~~--------------------------~~~~~~~ 195 (333)
T d1ri6a_ 145 PALKQDRICLFTVSDDGHLV---AQDPAEVTTVEGAGPRHMVFHPNE--------------------------QYAYCVN 195 (333)
T ss_dssp EEGGGTEEEEEEECTTSCEE---EEEEEEEECSTTCCEEEEEECTTS--------------------------SEEEEEE
T ss_pred CCCCCCEEEEEEECCCCCCE---EEECEEEEEECCCCCCEEEEECCC--------------------------EEEEEEC
T ss_conf 56554205689732687410---010001334038875279996020--------------------------1478620
Q ss_pred ECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEE-CCCEEEE
Q ss_conf 489809999368888885322211112457999999999999999511269999801999857998999996-7982999
Q 000270 488 SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI-MDCRICV 566 (1749)
Q Consensus 488 S~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIafSPDG~~LASgs-~DGtI~I 566 (1749)
...+...+|+............ .... .............+++++++++++++. .++.+.+
T Consensus 196 ~~~~~~~v~~~~~~~~~~~~~~-----~~~~--------------~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~ 256 (333)
T d1ri6a_ 196 ELNSSVDVWELKDPHGNIECVQ-----TLDM--------------MPENFSDTRWAADIHITPDGRHLYACDRTASLITV 256 (333)
T ss_dssp TTTTEEEEEESSCTTSCCEEEE-----EEEC--------------SCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCCCEEEEEECCCCCCEEEEE-----EEEE--------------EECCCCCCCCCEEEEEECCCCCEEEECCCCCEEEE
T ss_conf 4667217885103555202100-----2234--------------30687765531268995156720550456882787
Q ss_pred EECCCCCEEEEE---CCCCCCEEEEEECCCCCCEEEEE-ECCCCEEEE--ECCCCCEEEE
Q ss_conf 989999558971---28998839999948999489999-479909999--5899923899
Q 000270 567 WNAADGSLVHSL---TGHTESTYVLDVHPFNPRIAMSA-GYDGKTIVW--DIWEGIPIRI 620 (1749)
Q Consensus 567 WDl~tgkli~tL---~gHs~~VtsIafSP~d~rlLvSa-s~DGtIrIW--Di~tG~~l~t 620 (1749)
|++........+ ......+..++|+| ++++|+++ ..++.|.+| |..+|.+..+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~p~~~a~sp-DGk~l~va~~~~~~v~v~~id~~tG~l~~~ 315 (333)
T d1ri6a_ 257 FSVSEDGSVLSKEGFQPTETQPRGFNVDH-SGKYLIAAGQKSHHISVYEIVGEQGLLHEK 315 (333)
T ss_dssp EEECTTSCCEEEEEEEECSSSCCCEEECT-TSSEEEEECTTTCEEEEEEEETTTTEEEEE
T ss_pred EEECCCCCEEEEEEEECCCCCEEEEEEEC-CCCEEEEEECCCCEEEEEEEECCCCCEEEE
T ss_conf 88739997899999967899762899907-989999998899939999997999968999
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.87 E-value=1.8e-17 Score=129.10 Aligned_cols=289 Identities=11% Similarity=-0.046 Sum_probs=193.8
Q ss_pred CCCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE----------CCCEEEEEECCCCEEEEEECCCCCCE-------EE
Q ss_conf 22234403799706898779999979999999970----------87489999778980899971678985-------99
Q 000270 228 TMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGS----------DDRLVKIWSMETAYCLASCRGHEGDI-------TD 290 (1749)
Q Consensus 228 ~~~~t~~~i~tL~GH~~~VtsIaFSpDG~~LATGS----------~DGtIkIWDl~Tg~~i~tL~gHs~~V-------ts 290 (1749)
+...+.+.+.++.++... .++|+|||++|++++ .++.|.|||..+++.+..+..+.... ..
T Consensus 52 ~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~ 129 (373)
T d2madh_ 52 LDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWM 129 (373)
T ss_pred EECCCCCEEEEEECCCCC--CEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEECCCCCC
T ss_conf 989999799999579886--079868999899996057753212453189999777893888972688513685168970
Q ss_pred EEECCCCCEEEEEE--CCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEE
Q ss_conf 99968996799983--8990999988999528996077885599995269996248996328990999976889554525
Q 000270 291 LAVSSNNALVASAS--NDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRI 368 (1749)
Q Consensus 291 LafSPDg~lLASGS--~DGtIrIWDl~tgk~i~tL~gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i 368 (1749)
+.|+++++.++... .++.+.+|+....+..... ....++.|+|++. ..+++.+.|+.+.+|+...+......
T Consensus 130 ~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~g~--~~~v~~~~dg~~~~~~~~~~~~~~~~ 203 (373)
T d2madh_ 130 NANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL----SSPTCYHIHPGAP--STFYLLCAQGGLAKTDHAGGAAGAGL 203 (373)
T ss_pred EEEEECCCCEEEEEECCCCCEEEEECCCCEEEEEE----CCCEEEEEECCCC--CEEEEECCCCEEEEEECCCCEEEEEE
T ss_conf 89985899379999869874677623687289982----4520699962899--19999947993999974774266788
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEE
Q ss_conf 13799973348777888889999974279998479989999418980999938999998999998512431278998279
Q 000270 369 YIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNY 448 (1749)
Q Consensus 369 ~i~~~~~~~sg~~~~~~~s~~~h~~~V~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~s 448 (1749)
..... ..........+.+.+++.+ +..+.++.+.+|+..... ...+.....+......
T Consensus 204 ~~~~~--------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~-------~~~~~~~~~~~~~~~~ 261 (373)
T d2madh_ 204 VGAML--------------TAAQNLLTQPAQANKSGRI-VWPVYSGKILQADISAAG-------ATNKAPIDALSGGRKA 261 (373)
T ss_pred EEECC--------------CCCCCCEEEEEEECCCCEE-EEECCCCEEEEEECCCCE-------EEEEEEECCCCCCEEE
T ss_conf 63003--------------6675304345887899429-992589659999768990-------7897763056475786
Q ss_pred ----------EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf ----------9982787222233346877888875556555799899994898099993688888853222111124579
Q 000270 449 ----------VQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKV 518 (1749)
Q Consensus 449 ----------IafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v 518 (1749)
+.+++++... .........+++...++.+.+||..+++..
T Consensus 262 ~~~~~~~~~~~~~~~d~~~~----------------~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~-------------- 311 (373)
T d2madh_ 262 DTWRPGGWQQVAYLKSSDGI----------------YLLTSEQSAWKLHAAAKEVTSVTGLVGQTS-------------- 311 (373)
T ss_pred EEECCCCCEEEEEECCCCEE----------------EEECCCCCEEEEECCCCEEEEEECCCCCEE--------------
T ss_conf 64136741335771499759----------------995488824786258986999989999698--------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCE--EEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECC
Q ss_conf 999999999999995112699998019998579989--99996798299998999955897128998839999948
Q 000270 519 PPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRF--VLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHP 592 (1749)
Q Consensus 519 ~~~~~~~~~~~g~~i~~l~~h~~~VtsIafSPDG~~--LASgs~DGtI~IWDl~tgkli~tL~gHs~~VtsIafSP 592 (1749)
....+...+..++|+|||+. +++++.|+.|+|||+.+++.+.++.++....+.|++..
T Consensus 312 ----------------~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~ 371 (373)
T d2madh_ 312 ----------------SQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMN 371 (373)
T ss_pred ----------------EEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCEEEEEC
T ss_conf ----------------986689982589999899989999967999299999999989999888898981899846
|
| >d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: GCN5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.86 E-value=9.6e-22 Score=158.02 Aligned_cols=103 Identities=16% Similarity=0.266 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 89999999997311121123655443342588863448988897899987440877897999999999998430106999
Q 000270 1639 KLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRN 1718 (1749)
Q Consensus 1639 kl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RL~n~~Yr~~~~~~~Dv~li~~N~~~fN~~~ 1718 (1749)
+.++.+..+++.+.++..+|+|..|+.....|+|+++|+.||||+||++||++++|.++++|..||+|||.||++||+++
T Consensus 3 p~~~~l~~il~~l~~~~~a~pF~~pvd~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~ 82 (111)
T d1e6ia_ 3 PHDAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGEN 82 (111)
T ss_dssp TTHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHCCCCHHHCCCCCCHHCCCHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 57999999999998698871314899902170889885880419899999873612429999999999999999987999
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 78999999999999999826999
Q 000270 1719 TDLSTKIKRLSDLVTRTLSSLKA 1741 (1749)
Q Consensus 1719 s~~~~~a~~l~~~~~~~l~~~~~ 1741 (1749)
+.++++|..|+++|.++++++++
T Consensus 83 s~i~~~A~~l~~~f~~~~~~ipe 105 (111)
T d1e6ia_ 83 TSYYKYANRLEKFFNNKVKEIPE 105 (111)
T ss_dssp SHHHHHHHHHHHHHHHHHHTSGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999997310
|
| >d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: GCN5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=2.3e-21 Score=155.44 Aligned_cols=101 Identities=14% Similarity=0.267 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 68999999999731112112365544334258886344898889789998744087789799999999999843010699
Q 000270 1638 NKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGR 1717 (1749)
Q Consensus 1638 ~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RL~n~~Yr~~~~~~~Dv~li~~N~~~fN~~ 1717 (1749)
+.|+..+..+++.+..+..+++|..|++....|+|+++|+.||||+||++||+++.|.++++|..|+++||.||.+||++
T Consensus 1 d~L~~~l~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 80 (102)
T d3d7ca1 1 DQLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPP 80 (102)
T ss_dssp HHHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCT
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 95999999999999809997722788996667678988089468999998760676377999999999999999998799
Q ss_pred CCHHHHHHHHHHHHHHHHHHC
Q ss_conf 978999999999999999826
Q 000270 1718 NTDLSTKIKRLSDLVTRTLSS 1738 (1749)
Q Consensus 1718 ~s~~~~~a~~l~~~~~~~l~~ 1738 (1749)
+|.++++|..|+++|.++|++
T Consensus 81 ~s~~~~~A~~l~~~f~~~~ke 101 (102)
T d3d7ca1 81 DSEYCRCASALEKFFYFKLKE 101 (102)
T ss_dssp TSHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999999736
|
| >d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=2.5e-21 Score=155.17 Aligned_cols=110 Identities=16% Similarity=0.332 Sum_probs=98.8
Q ss_pred CCCHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 79035668999999999-73111211236554433425888634489888978999874408778979999999999984
Q 000270 1632 IDDDNRNKLLSAFAKLE-QSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSN 1710 (1749)
Q Consensus 1632 idpe~r~kl~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RL~n~~Yr~~~~~~~Dv~li~~N 1710 (1749)
++++....+..++..++ +.+..++.+|||..||+....|+||.+|+.||||+||++||++++|+++++|..||++||+|
T Consensus 2 ~~~~~~~~~~~il~~l~~~~~~~~p~a~pF~~pVd~~~~PdY~~vIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~N 81 (128)
T d1eqfa2 2 LDDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILAN 81 (128)
T ss_dssp GGCHHHHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 88427899999999999999871998770147999000768898848810399999999863246389999999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 3010699978999999999999999826999
Q 000270 1711 AESYFGRNTDLSTKIKRLSDLVTRTLSSLKA 1741 (1749)
Q Consensus 1711 ~~~fN~~~s~~~~~a~~l~~~~~~~l~~~~~ 1741 (1749)
|.+||++++.+++.|..|++.|.+.++++.+
T Consensus 82 a~~yN~~~s~i~~~A~~L~~~~~~~l~~~~~ 112 (128)
T d1eqfa2 82 SVKYNGPESQYTKTAQEIVNVCYQTLTEYDE 112 (128)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998799999999999999999999999698
|
| >d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: P300/CAF histone acetyltransferase bromodomain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.9e-21 Score=155.94 Aligned_cols=105 Identities=14% Similarity=0.263 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 66899999999973111211236554433425888634489888978999874408778979999999999984301069
Q 000270 1637 RNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFG 1716 (1749)
Q Consensus 1637 r~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RL~n~~Yr~~~~~~~Dv~li~~N~~~fN~ 1716 (1749)
.+++...+..+++.+..+..+++|..|+.....|+||++|+.||||+||++||+++.|+++++|..||++||.||.+||+
T Consensus 11 ~~~l~~~l~~il~~l~~~~~a~~F~~pv~~~~~pdY~~iI~~PmdL~~I~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yn~ 90 (118)
T d1wuma1 11 PDQLYSTLKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADLQRVFTNCKEYNP 90 (118)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCHHHHSCCCSSSSSSCTTTCSSCCCHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 89999999999999995899681568899645768898838742099999976046657668999999999999999879
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9978999999999999999826999
Q 000270 1717 RNTDLSTKIKRLSDLVTRTLSSLKA 1741 (1749)
Q Consensus 1717 ~~s~~~~~a~~l~~~~~~~l~~~~~ 1741 (1749)
+++.+++.|..|+++|.++++++.+
T Consensus 91 ~~s~~~~~A~~l~~~f~~~~~e~~l 115 (118)
T d1wuma1 91 PESEYYKCANILEKFFFSKIKEAGL 115 (118)
T ss_dssp TTSSHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999999999998656
|
| >d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=7.2e-21 Score=152.07 Aligned_cols=105 Identities=13% Similarity=0.285 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 66899999999973111211236554433425888634489888978999874408778979999999999984301069
Q 000270 1637 RNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFG 1716 (1749)
Q Consensus 1637 r~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~PmDl~tI~~RL~n~~Yr~~~~~~~Dv~li~~N~~~fN~ 1716 (1749)
...+...+..+++.+..+..+|+|..|++....||||.+|+.||||+||++||++++|+++++|..||+|||.||.+||+
T Consensus 24 ~~~l~~~l~~il~~l~~~~~s~pF~~Pvd~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~ 103 (139)
T d1eqfa1 24 MVTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNG 103 (139)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHCCCHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999982997655517999344667898807735499999999748908999999999999999999879
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9978999999999999999826999
Q 000270 1717 RNTDLSTKIKRLSDLVTRTLSSLKA 1741 (1749)
Q Consensus 1717 ~~s~~~~~a~~l~~~~~~~l~~~~~ 1741 (1749)
+++.++++|..|+++|.+.++++..
T Consensus 104 ~~s~i~~~A~~L~~~~~~~~~~~~~ 128 (139)
T d1eqfa1 104 PKHSLTQISQSMLDLCDEKLKEKED 128 (139)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.84 E-value=2e-18 Score=135.51 Aligned_cols=280 Identities=9% Similarity=0.024 Sum_probs=161.2
Q ss_pred CCCCCCCEEEEECCCCCCEEEEEECCCCCEEEEE----------ECCCEEEEEECCCCEEEEEECCCCC-------CEEE
Q ss_conf 2223440379970689877999997999999997----------0874899997789808999716789-------8599
Q 000270 228 TMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITG----------SDDRLVKIWSMETAYCLASCRGHEG-------DITD 290 (1749)
Q Consensus 228 ~~~~t~~~i~tL~GH~~~VtsIaFSpDG~~LATG----------S~DGtIkIWDl~Tg~~i~tL~gHs~-------~Vts 290 (1749)
+...+.+.+.++..+... .++|+|||++|++. ..|+.|++||+.+++.+..+..+.. ....
T Consensus 33 ~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~ 110 (355)
T d2bbkh_ 33 IDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWM 110 (355)
T ss_dssp EETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGG
T ss_pred EECCCCCEEEEEECCCCC--CEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEECCCCCCE
T ss_conf 999999499999899998--569948999999996777642015899989999999997988980588640311798734
Q ss_pred EEECCCCCEEEEEE--CCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEE
Q ss_conf 99968996799983--8990999988999528996077885599995269996248996328990999976889554525
Q 000270 291 LAVSSNNALVASAS--NDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRI 368 (1749)
Q Consensus 291 LafSPDg~lLASGS--~DGtIrIWDl~tgk~i~tL~gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i 368 (1749)
++|++++++++.+. .+..+.+|+..+++.+..+..+..... ... ... ..+..+.||...++..........+
T Consensus 111 ~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~---~~~~~~~dg~~~~v~~~~~~~~~~~ 184 (355)
T d2bbkh_ 111 TSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHI-FPT--APD---TFFMHCRDGSLAKVAFGTEGTPEIT 184 (355)
T ss_dssp EEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEE-EEE--ETT---EEEEEETTSCEEEEECCSSSCCEEE
T ss_pred EEEECCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEE-EEC--CCC---CEEEECCCCCEEEEEECCCCEEEEE
T ss_conf 9993388715773279882045430578837667705874047-306--996---3699938999899983478737999
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCC-----
Q ss_conf 137999733487778888899999742799984799899994189809999389999989999985124312789-----
Q 000270 369 YIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE----- 443 (1749)
Q Consensus 369 ~i~~~~~~~sg~~~~~~~s~~~h~~~V~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH~----- 443 (1749)
..... ...+...+....+.+++..++.++.++.+++|++..+.. ..+.....+.
T Consensus 185 ~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~~~~~~~~~~~~~ 243 (355)
T d2bbkh_ 185 HTEVF--------------HPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-------KFLPAVEALTEAERA 243 (355)
T ss_dssp ECCCC--------------SCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-------EECCCEESSCHHHHH
T ss_pred ECCCC--------------CCEECCEEEECCCCCCCCEEEEECCCCEEEEEECCCCCE-------EEEECCCCCCCCEEE
T ss_conf 62433--------------300011061021538997388746998299996589907-------998445784412685
Q ss_pred -----CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC----------CCEEEEECCCCCCCCCCC
Q ss_conf -----98279998278722223334687788887555655579989999489----------809999368888885322
Q 000270 444 -----NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD----------GSAIIWIPRSRRSHPKAA 508 (1749)
Q Consensus 444 -----~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LvSgS~D----------GtIrIWDl~s~k~~~~~~ 508 (1749)
.....+.+++++ ..++....+ ..|.+||..+++...
T Consensus 244 ~~~~p~~~~~~~~~~d~--------------------------~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~--- 294 (355)
T d2bbkh_ 244 DGWRPGGWQQVAYHRAL--------------------------DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA--- 294 (355)
T ss_dssp TTEEECSSSCEEEETTT--------------------------TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE---
T ss_pred EEEECCCEEEEEEECCC--------------------------CEEEEEECCCCCEEECCCCCEEEEEECCCCCEEE---
T ss_conf 43303510899980799--------------------------7678874068712651799759998678884989---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC--EEEEEECCCEEEEEECCCCCEEEEECCCCCCEE
Q ss_conf 211112457999999999999999511269999801999857998--999996798299998999955897128998839
Q 000270 509 RWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR--FVLAAIMDCRICVWNAADGSLVHSLTGHTESTY 586 (1749)
Q Consensus 509 ~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIafSPDG~--~LASgs~DGtI~IWDl~tgkli~tL~gHs~~Vt 586 (1749)
. ..+...+.+++|+|||+ +++++..|+.|.|||+.+++.++++.++.....
T Consensus 295 --------------------------~-~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~ 347 (355)
T d2bbkh_ 295 --------------------------K-FEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQ 347 (355)
T ss_dssp --------------------------E-EEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCC
T ss_pred --------------------------E-ECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCC
T ss_conf --------------------------9-6689987799992899969999978999899999999989999928697965
Q ss_pred EEEECC
Q ss_conf 999948
Q 000270 587 VLDVHP 592 (1749)
Q Consensus 587 sIafSP 592 (1749)
.+.+..
T Consensus 348 ~i~~~d 353 (355)
T d2bbkh_ 348 VITTAD 353 (355)
T ss_dssp EEECCC
T ss_pred EEEECC
T ss_conf 899699
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.82 E-value=1.3e-17 Score=129.91 Aligned_cols=301 Identities=10% Similarity=-0.069 Sum_probs=154.4
Q ss_pred EEEECCCCCEE--EE-EEC--CCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEE----------CCCEEEEE
Q ss_conf 99997999999--99-708--74899997789808999716789859999968996799983----------89909999
Q 000270 248 CAIFDRSGRYV--IT-GSD--DRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS----------NDCIIRVW 312 (1749)
Q Consensus 248 sIaFSpDG~~L--AT-GS~--DGtIkIWDl~Tg~~i~tL~gHs~~VtsLafSPDg~lLASGS----------~DGtIrIW 312 (1749)
.++..++++.. +. ... +..|.+||..+++.+.++.++... .++|+||++.|++.+ .|+.|.+|
T Consensus 24 ~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~ 101 (368)
T d1mdah_ 24 DHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVF 101 (368)
T ss_dssp CCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEE
T ss_pred CCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCC--CCEECCCCCEEEEECCCCCCCCCCCCCCEEEEE
T ss_conf 645589876126972045788621799708998377888578777--513989998899975567640103567869999
Q ss_pred ECCCCCEEEEECCCCC-------CEEEEEECCCCCCCEEEEEE-CCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 8899952899607788-------55999952699962489963-289909999768895545251379997334877788
Q 000270 313 RLPDGLPISVLRGHTA-------AVTAIAFSPRPGSVYQLLSS-SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 384 (1749)
Q Consensus 313 Dl~tgk~i~tL~gHs~-------~VtsIaFSPdg~~~~~LvSg-S~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~ 384 (1749)
|..+++++..+..+.. ....++|+||++ +|+++ ..++.+.+||+.+++....+..+....
T Consensus 102 D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk---~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~--------- 169 (368)
T d1mdah_ 102 DPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA---CLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH--------- 169 (368)
T ss_dssp CTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS---CEEEEECSSSCEEEEEETTTEEEEEEECSSCCC---------
T ss_pred ECCCCCEEEEECCCCCCEECCCCCCCCEEECCCCC---EEEEEECCCCEEEEEECCCCCEEEEEECCCCCE---------
T ss_conf 89999383064378542102468864058878998---999996899859999899893867860467523---------
Q ss_pred CCCCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 88899999742799984799899994189809999389999989999985124312789982799982787222233346
Q 000270 385 SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLAD 464 (1749)
Q Consensus 385 ~~s~~~h~~~V~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~ 464 (1749)
+ +......++..+.||.+.+|+......... ......+..+...+..+.+.+++
T Consensus 170 ----------~----~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g--------- 223 (368)
T d1mdah_ 170 ----------I----HPGAAATHYLGSCPASLAASDLAAAPAAAG---IVGAQCTGAQNCSSQAAQANYPG--------- 223 (368)
T ss_dssp ----------C----EEEETTEEECCCCTTSCEEEECCSSCCCCE---ECCCCSCTTSCBCSCCEEETTTT---------
T ss_pred ----------E----CCCCCCEEEEECCCCCEEEEEECCCCEEEE---EEECCCCCCCCCCEEECCCCCCC---------
T ss_conf ----------7----469982399994899889998268962666---53031113566646601015586---------
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCC
Q ss_conf 8778888755565557998999948980999936888888532221111245799999999999999951--12699998
Q 000270 465 SSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ--RILPTPRG 542 (1749)
Q Consensus 465 ~~~~~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~--~l~~h~~~ 542 (1749)
.+.....+.+.+++........... + ...... .......+
T Consensus 224 -------------------~~~~~~~~~v~~~~~~~~~~~~~~~-~------------------~~~~~~~~~~~~~~~g 265 (368)
T d1mdah_ 224 -------------------MLVWAVASSILQGDIPAAGATMKAA-I------------------DGNESGRKADNFRSAG 265 (368)
T ss_dssp -------------------EEEECBSSCCEEEECCSSCCEEECC-C------------------CSSCTHHHHTTEEECS
T ss_pred -------------------EEEEECCCCEEEEEECCCCEEEEEE-C------------------CCCCCEEEEEEECCCC
T ss_conf -------------------8999348977999606993699760-2------------------4654304554012788
Q ss_pred EEEEEECCCCCEEEEEECC---------CEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCC-EEEEEECCCCEEEEEC
Q ss_conf 0199985799899999679---------82999989999558971289988399999489994-8999947990999958
Q 000270 543 VNMIVWSLDNRFVLAAIMD---------CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR-IAMSAGYDGKTIVWDI 612 (1749)
Q Consensus 543 VtsIafSPDG~~LASgs~D---------GtI~IWDl~tgkli~tL~gHs~~VtsIafSP~d~r-lLvSas~DGtIrIWDi 612 (1749)
...+++++++..++....+ ..|.+||..+++.+..+... ..+..++|+|++.. +++++..|+.|.+||.
T Consensus 266 ~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~ 344 (368)
T d1mdah_ 266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDA 344 (368)
T ss_dssp SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred CEEEEECCCCCEEEEEECCCCCEEECCCCEEEEEECCCCCEEEEECCC-CCEEEEEECCCCCEEEEEEECCCCEEEEEEC
T ss_conf 356887179987999835897334058864999989999486895589-9651799998999899999489996999989
Q ss_pred CCCCEEEEEEEEECC
Q ss_conf 999238998600026
Q 000270 613 WEGIPIRIYEISRFR 627 (1749)
Q Consensus 613 ~tG~~l~tl~~~~fs 627 (1749)
.+|+.++++..+..+
T Consensus 345 ~tgk~~~~i~~g~~P 359 (368)
T d1mdah_ 345 ASDQDQSSVELDKGP 359 (368)
T ss_dssp SSCEEEEECCCCSCC
T ss_pred CCCCEEEEEECCCCC
T ss_conf 999799998799998
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=3.2e-16 Score=120.63 Aligned_cols=265 Identities=13% Similarity=0.110 Sum_probs=156.6
Q ss_pred CCCCCCEEEEEECCCCCEEEEE-ECCCEEEEEECCCCEEEEEE---CCCCCCEEEEEECCCCCEEEEEEC-CCEEEEEEC
Q ss_conf 0689877999997999999997-08748999977898089997---167898599999689967999838-990999988
Q 000270 240 RGHRNAVYCAIFDRSGRYVITG-SDDRLVKIWSMETAYCLASC---RGHEGDITDLAVSSNNALVASASN-DCIIRVWRL 314 (1749)
Q Consensus 240 ~GH~~~VtsIaFSpDG~~LATG-S~DGtIkIWDl~Tg~~i~tL---~gHs~~VtsLafSPDg~lLASGS~-DGtIrIWDl 314 (1749)
..|.+.|.+++|+|||++|+++ ..|+.|++|++........+ ..+...+..++|+|||++|++++. ++.|.+|+.
T Consensus 33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~ 112 (333)
T d1ri6a_ 33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRL 112 (333)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEEEEECCCCCEEEECCCCCCCEEEECC
T ss_conf 75799886899958979999997789969999996898707985301369985499995999887420568883022001
Q ss_pred CCCCEEEE--ECCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99952899--6077885599995269996248996328990999976889554525137999733487778888899999
Q 000270 315 PDGLPISV--LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1749)
Q Consensus 315 ~tgk~i~t--L~gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~ 392 (1749)
........ ...+...+.++.|+|+++ ..++....+..|.+|+.............. ......
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~v~~s~d~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--------------~~~~~g 176 (333)
T d1ri6a_ 113 EDGLPVGVVDVVEGLDGCHSANISPDNR--TLWVPALKQDRICLFTVSDDGHLVAQDPAE--------------VTTVEG 176 (333)
T ss_dssp ETTEEEEEEEEECCCTTBCCCEECTTSS--EEEEEEGGGTEEEEEEECTTSCEEEEEEEE--------------EECSTT
T ss_pred CCCCCEECCCCCCCCCCCEEEEEEECCE--EEECCCCCCCEEEEEEECCCCCCEEEECEE--------------EEEECC
T ss_conf 1100000010037785314988630101--310256554205689732687410010001--------------334038
Q ss_pred CCEEEEEECCCCCEEEEEC-CCCCEEEEECCCCCCCCCCCCCCCEEEE------CCCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 7427999847998999941-8980999938999998999998512431------27899827999827872222333468
Q 000270 393 HQIFCCAFNANGTVFVTGS-SDTLARVWNACKPNTDDSDQPNHEIDVL------SGHENDVNYVQFSGCAVASRFSLADS 465 (1749)
Q Consensus 393 ~~V~sIafSPDG~~LasGS-~DGtIrIWDl~t~~~~~s~q~~~~i~~l------~gH~~~V~sIafSpdg~as~~s~~~~ 465 (1749)
.....++|++++..++... ..+...+|+...... ........ .........+.+++++
T Consensus 177 ~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~---------- 241 (333)
T d1ri6a_ 177 AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG-----NIECVQTLDMMPENFSDTRWAADIHITPDG---------- 241 (333)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS-----CCEEEEEEECSCTTCCSCCCEEEEEECTTS----------
T ss_pred CCCCEEEEECCCEEEEEECCCCCCEEEEEECCCCC-----CEEEEEEEEEEECCCCCCCCCEEEEEECCC----------
T ss_conf 87527999602014786204667217885103555-----202100223430687765531268995156----------
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 77888875556555799899994898099993688888853222111124579999999999999995112699998019
Q 000270 466 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNM 545 (1749)
Q Consensus 466 ~~~~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~Vts 545 (1749)
...++.+..++.+.+|++......... .........+..
T Consensus 242 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~p~~ 280 (333)
T d1ri6a_ 242 ---------------RHLYACDRTASLITVFSVSEDGSVLSK--------------------------EGFQPTETQPRG 280 (333)
T ss_dssp ---------------SEEEEEETTTTEEEEEEECTTSCCEEE--------------------------EEEEECSSSCCC
T ss_pred ---------------CCEEEECCCCCEEEEEEECCCCCEEEE--------------------------EEEECCCCCEEE
T ss_conf ---------------720550456882787887399978999--------------------------999678997628
Q ss_pred EEECCCCCEEEEEE-CCCEEEEE--ECCCCCEEE
Q ss_conf 99857998999996-79829999--899995589
Q 000270 546 IVWSLDNRFVLAAI-MDCRICVW--NAADGSLVH 576 (1749)
Q Consensus 546 IafSPDG~~LASgs-~DGtI~IW--Dl~tgkli~ 576 (1749)
++|+|||++|++++ .++.|.+| |..+|++..
T Consensus 281 ~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~~ 314 (333)
T d1ri6a_ 281 FNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHE 314 (333)
T ss_dssp EEECTTSSEEEEECTTTCEEEEEEEETTTTEEEE
T ss_pred EEEECCCCEEEEEECCCCEEEEEEEECCCCCEEE
T ss_conf 9990798999999889993999999799996899
|
| >d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: CREB-binding protein, CBP species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=8.2e-20 Score=144.93 Aligned_cols=102 Identities=14% Similarity=0.259 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 356689999999997311121123655443342--588863448988897899987440877897999999999998430
Q 000270 1635 DNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAE 1712 (1749)
Q Consensus 1635 e~r~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~y~~~i~~PmDl~tI~~RL~n~~Yr~~~~~~~Dv~li~~N~~ 1712 (1749)
+.+..|+..+.++.. ....+++|..|+... ..|||+++|+.||||+||++||+++.|+++++|..||++||.||+
T Consensus 6 el~~~l~~~l~~l~~---~~p~a~pF~~pvd~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~ 82 (114)
T d3dwya1 6 ELRQALMPTLEALYR---QDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAW 82 (114)
T ss_dssp HHHHHHHHHHHHHHT---CTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---CCCCCCCCCCCCCHHHCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 999999999999985---39677766799983213599778883787779999999884756629999999999999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 106999789999999999999998269
Q 000270 1713 SYFGRNTDLSTKIKRLSDLVTRTLSSL 1739 (1749)
Q Consensus 1713 ~fN~~~s~~~~~a~~l~~~~~~~l~~~ 1739 (1749)
+||++++.+++.|..|++.|.+.+.++
T Consensus 83 ~yN~~~s~~~~~A~~L~~~f~~~~~~i 109 (114)
T d3dwya1 83 LYNRKTSRVYKFCSKLAEVFEQEIDPV 109 (114)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 987999999999999999999999999
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.78 E-value=1.2e-15 Score=116.79 Aligned_cols=165 Identities=8% Similarity=0.021 Sum_probs=92.2
Q ss_pred EEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEC-----CCCCCEEEEEECCCCCEEEEEEC---------CCEEEEEE
Q ss_conf 99997999999997087489999778980899971-----67898599999689967999838---------99099998
Q 000270 248 CAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-----GHEGDITDLAVSSNNALVASASN---------DCIIRVWR 313 (1749)
Q Consensus 248 sIaFSpDG~~LATGS~DGtIkIWDl~Tg~~i~tL~-----gHs~~VtsLafSPDg~lLASGS~---------DGtIrIWD 313 (1749)
.+.|.+++.++.. .++.|.+||+.+++....+. .|...|.++.||||+++|+.++. ++.+.|||
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d 98 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCEECCCCEEEEE--CCCCEEEEECCCCCEEEEECHHHHHHCCCCCCEEEECCCCCEEEEEECCCCEEEECCCCEEEEEE
T ss_conf 7896899979997--59949999889997899970156443167654059989889799997771000104673499998
Q ss_pred CCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89995289960778855999952699962489963289909999768895545251379997334877788888999997
Q 000270 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1749)
Q Consensus 314 l~tgk~i~tL~gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~ 393 (1749)
+.+++ +..+..+...+..+.|+|||+ .++.. .++.+.+|+..++................+..... ......+
T Consensus 99 ~~~~~-~~~l~~~~~~~~~~~~SPDG~---~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~--~~~~~~~ 171 (470)
T d2bgra1 99 LNKRQ-LITEERIPNNTQWVTWSPVGH---KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWV--YEEEVFS 171 (470)
T ss_dssp TTTTE-ECCSSCCCTTEEEEEECSSTT---CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHH--HHHHTSS
T ss_pred CCCCC-CCCCCCCCCCCCCCCCCCCCC---EEEEE-ECCCCEEEECCCCCEEEEEECCCCCCCCCCCCCEE--EEEEECC
T ss_conf 98885-131246874231010146764---13575-14641379889994653210147774053543201--1210047
Q ss_pred CEEEEEECCCCCEEEEECCCCC-EEEEEC
Q ss_conf 4279998479989999418980-999938
Q 000270 394 QIFCCAFNANGTVFVTGSSDTL-ARVWNA 421 (1749)
Q Consensus 394 ~V~sIafSPDG~~LasGS~DGt-IrIWDl 421 (1749)
....+.|||||+.|+....|.. +..|.+
T Consensus 172 ~~~~~~wSPDGk~ia~~~~d~~~v~~~~~ 200 (470)
T d2bgra1 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEY 200 (470)
T ss_dssp SSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred CCCCCEECCCCCCCCEEEECCCCCCEEEE
T ss_conf 76530799998722026863776706998
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.74 E-value=8e-15 Score=111.11 Aligned_cols=274 Identities=11% Similarity=0.015 Sum_probs=172.2
Q ss_pred CCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE----------CCCEEEEEECCCCEEEEEECCCCC-------CEEEE
Q ss_conf 2234403799706898779999979999999970----------874899997789808999716789-------85999
Q 000270 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGS----------DDRLVKIWSMETAYCLASCRGHEG-------DITDL 291 (1749)
Q Consensus 229 ~~~t~~~i~tL~GH~~~VtsIaFSpDG~~LATGS----------~DGtIkIWDl~Tg~~i~tL~gHs~-------~VtsL 291 (1749)
...+.+.+.++.++... .++|+|||++|++.+ .|+.|.+||..+++.+..+..+.. ....+
T Consensus 52 d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~ 129 (368)
T d1mdah_ 52 CAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHII 129 (368)
T ss_dssp ETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSE
T ss_pred ECCCCCEEEEEECCCCC--CCEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEECCCCCCCCE
T ss_conf 08998377888578777--5139899988999755676401035678699998999938306437854210246886405
Q ss_pred EECCCCCEEEEEE-CCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEEC
Q ss_conf 9968996799983-899099998899952899607788559999526999624899632899099997688955452513
Q 000270 292 AVSSNNALVASAS-NDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYI 370 (1749)
Q Consensus 292 afSPDg~lLASGS-~DGtIrIWDl~tgk~i~tL~gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~i 370 (1749)
+|+|||++|+++. .++.|.+||+.+++.+..+..+.... +.+.+. ..++..+.||.+.+|++...........
T Consensus 130 a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~----~~~~~~--~~~v~~~~Dg~~~~~~~~~~~~~~~~~~ 203 (368)
T d1mdah_ 130 GNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH----IHPGAA--ATHYLGSCPASLAASDLAAAPAAAGIVG 203 (368)
T ss_dssp EECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC----CEEEET--TEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred EECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCE----ECCCCC--CEEEEECCCCCEEEEEECCCCEEEEEEE
T ss_conf 8878998999996899859999899893867860467523----746998--2399994899889998268962666530
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCC--------
Q ss_conf 799973348777888889999974279998479989999418980999938999998999998512431278--------
Q 000270 371 PRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH-------- 442 (1749)
Q Consensus 371 ~~~~~~~sg~~~~~~~s~~~h~~~V~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH-------- 442 (1749)
. .....+...+....+.+++..+.+. .+.+.+++....... .+.....+
T Consensus 204 ~--------------~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 260 (368)
T d1mdah_ 204 A--------------QCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGAT-------MKAAIDGNESGRKADN 260 (368)
T ss_dssp C--------------CSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCE-------EECCCCSSCTHHHHTT
T ss_pred C--------------CCCCCCCCCEEECCCCCCCEEEEEC--CCCEEEEEECCCCEE-------EEEECCCCCCEEEEEE
T ss_conf 3--------------1113566646601015586899934--897799960699369-------9760246543045540
Q ss_pred --CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE-CC--------CCEEEEECCCCCCCCCCCCCC
Q ss_conf --9982799982787222233346877888875556555799899994-89--------809999368888885322211
Q 000270 443 --ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCS-RD--------GSAIIWIPRSRRSHPKAARWT 511 (1749)
Q Consensus 443 --~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LvSgS-~D--------GtIrIWDl~s~k~~~~~~~~~ 511 (1749)
......+++++++ ..++... .+ ..|.+||..+++....
T Consensus 261 ~~~~g~~~~a~~~~~--------------------------~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~----- 309 (368)
T d1mdah_ 261 FRSAGFQMVAKLKNT--------------------------DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP----- 309 (368)
T ss_dssp EEECSSSCEEEETTT--------------------------TEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC-----
T ss_pred ECCCCCEEEEECCCC--------------------------CEEEEEECCCCCEEECCCCEEEEEECCCCCEEEE-----
T ss_conf 127883568871799--------------------------8799983589733405886499998999948689-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCE--EEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEE
Q ss_conf 1124579999999999999995112699998019998579989--99996798299998999955897128998839999
Q 000270 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRF--VLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLD 589 (1749)
Q Consensus 512 ~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIafSPDG~~--LASgs~DGtI~IWDl~tgkli~tL~gHs~~VtsIa 589 (1749)
......+..++|+|||+. ++++..++.|++||..+++.+.++..... -..|.
T Consensus 310 -------------------------~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~-P~~l~ 363 (368)
T d1mdah_ 310 -------------------------ISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLS 363 (368)
T ss_dssp -------------------------CEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEE
T ss_pred -------------------------ECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCC-CCEEE
T ss_conf -------------------------5589965179999899989999948999699998999979999879999-87899
Q ss_pred E
Q ss_conf 9
Q 000270 590 V 590 (1749)
Q Consensus 590 f 590 (1749)
+
T Consensus 364 ~ 364 (368)
T d1mdah_ 364 V 364 (368)
T ss_dssp C
T ss_pred E
T ss_conf 7
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.71 E-value=1.7e-14 Score=108.89 Aligned_cols=116 Identities=12% Similarity=0.061 Sum_probs=88.6
Q ss_pred ECCCCCCEEEEEECCCCCEEEEEEC---------CCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEE
Q ss_conf 7068987799999799999999708---------7489999778980899971678985999996899679998389909
Q 000270 239 VRGHRNAVYCAIFDRSGRYVITGSD---------DRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCII 309 (1749)
Q Consensus 239 L~GH~~~VtsIaFSpDG~~LATGS~---------DGtIkIWDl~Tg~~i~tL~gHs~~VtsLafSPDg~lLASGS~DGtI 309 (1749)
|.+|...|.++.|||||++|+.++. ++.+.|||+.++. +..+..+...+..+.|||||+.||... ++.+
T Consensus 57 ~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l 134 (470)
T d2bgra1 57 FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDI 134 (470)
T ss_dssp TTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEE
T ss_pred HHHCCCCCCEEEECCCCCEEEEEECCCCEEEECCCCEEEEEECCCCC-CCCCCCCCCCCCCCCCCCCCCEEEEEE-CCCC
T ss_conf 44316765405998988979999777100010467349999898885-131246874231010146764135751-4641
Q ss_pred EEEECCCCCEEEEECCC------------------CCCEEEEEECCCCCCCEEEEEECCCCC-EEEEEC
Q ss_conf 99988999528996077------------------885599995269996248996328990-999976
Q 000270 310 RVWRLPDGLPISVLRGH------------------TAAVTAIAFSPRPGSVYQLLSSSDDGT-CRIWDA 359 (1749)
Q Consensus 310 rIWDl~tgk~i~tL~gH------------------s~~VtsIaFSPdg~~~~~LvSgS~DGt-IrIWDl 359 (1749)
.+|+..++........+ .+....+.|+|||+ .|+....|.+ +..|.+
T Consensus 135 ~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk---~ia~~~~d~~~v~~~~~ 200 (470)
T d2bgra1 135 YVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGT---FLAYAQFNDTEVPLIEY 200 (470)
T ss_dssp EEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSS---EEEEEEEECTTCCEEEE
T ss_pred EEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEECCCCC---CCCEEEECCCCCCEEEE
T ss_conf 3798899946532101477740535432011210047765307999987---22026863776706998
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.61 E-value=3.6e-14 Score=106.68 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=16.2
Q ss_pred EEEEECCCEEEEEECCCCEEEEEEC
Q ss_conf 9997087489999778980899971
Q 000270 258 VITGSDDRLVKIWSMETAYCLASCR 282 (1749)
Q Consensus 258 LATGS~DGtIkIWDl~Tg~~i~tL~ 282 (1749)
+++|+.+|.|.||++.+++.++++.
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~Ip 38 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIP 38 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEEC
T ss_pred EEECCCCCCEEEEECCCCCEEEEEE
T ss_conf 9968877748999678980799997
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.48 E-value=1.3e-13 Score=102.80 Aligned_cols=67 Identities=10% Similarity=0.037 Sum_probs=47.9
Q ss_pred CCCCCCEEEEEECCCCCEEEEE-ECCCEEEEEECCCCEEEEEEC-CCCCCEEEEEECCCCC--EEEEEECC
Q ss_conf 0689877999997999999997-087489999778980899971-6789859999968996--79998389
Q 000270 240 RGHRNAVYCAIFDRSGRYVITG-SDDRLVKIWSMETAYCLASCR-GHEGDITDLAVSSNNA--LVASASND 306 (1749)
Q Consensus 240 ~GH~~~VtsIaFSpDG~~LATG-S~DGtIkIWDl~Tg~~i~tL~-gHs~~VtsLafSPDg~--lLASGS~D 306 (1749)
..|.-.+.+..++|||++|+.. ..+..|.+||+.++++...+. .+...+..++|+|+++ +++..+.+
T Consensus 68 d~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~ 138 (441)
T d1qnia2 68 DCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEF 138 (441)
T ss_dssp CBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECS
T ss_pred CCCCCCCCEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCEEEEEECCCC
T ss_conf 55677722103268888899973899979999887784755795678878643487056998999956677
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.43 E-value=2.1e-09 Score=74.33 Aligned_cols=182 Identities=7% Similarity=0.092 Sum_probs=99.7
Q ss_pred CEEEEEECCCCCEEEEECC-CCCEEEEECCCCCCCCCCCCCCCEEE--ECCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 4279998479989999418-98099993899999899999851243--12789982799982787222233346877888
Q 000270 394 QIFCCAFNANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDV--LSGHENDVNYVQFSGCAVASRFSLADSSKEDS 470 (1749)
Q Consensus 394 ~V~sIafSPDG~~LasGS~-DGtIrIWDl~t~~~~~s~q~~~~i~~--l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~ 470 (1749)
.+.++.|+|+|++++++.. ...|.+|+...... ...... ..........+.|+|++
T Consensus 146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~------~~~~~~~~~~~~g~gPr~i~f~pdg--------------- 204 (365)
T d1jofa_ 146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGE------VELVGSVDAPDPGDHPRWVAMHPTG--------------- 204 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC------EEEEEEEECSSTTCCEEEEEECTTS---------------
T ss_pred CCEEEEECCCCCEEEEEECCCCEEEEEECCCCCC------EEECCCEEECCCCCCEEEEEECCCC---------------
T ss_conf 1159788899998998207998799997068871------6652511112788740899988998---------------
Q ss_pred CCCCCCCCCCCCE-EEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 8755565557998-999948980999936888888532221111245799999999999999951126999980199985
Q 000270 471 TPKFKNSWFCHDN-IVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWS 549 (1749)
Q Consensus 471 ~~~~~~s~~~~~~-LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIafS 549 (1749)
++ +++...+++|.+|++...........-. .. +.... .................+.++
T Consensus 205 -----------~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~--~~--~~~~~------~~~~~~~~~~~~~~~~~i~~s 263 (365)
T d1jofa_ 205 -----------NYLYALMEAGNRICEYVIDPATHMPVYTHHS--FP--LIPPG------IPDRDPETGKGLYRADVCALT 263 (365)
T ss_dssp -----------SEEEEEETTTTEEEEEEECTTTCCEEEEEEE--EE--SSCTT------CCCBCTTTSSBSEEEEEEEEC
T ss_pred -----------CEEEEECCCCCEEEEEEECCCCCEEEEEEEE--EC--CCCCC------CCCCCCCCCCCCCCCCCEEEC
T ss_conf -----------6699951589989999955987537787312--40--24556------556665444435776316998
Q ss_pred CCCCEEEEEEC------CCEEEEEECCCCCEEE-EE-----CCCCCCEEEEEECCCCCCEE-EEEECCCCEEEEECCCCC
Q ss_conf 79989999967------9829999899995589-71-----28998839999948999489-999479909999589992
Q 000270 550 LDNRFVLAAIM------DCRICVWNAADGSLVH-SL-----TGHTESTYVLDVHPFNPRIA-MSAGYDGKTIVWDIWEGI 616 (1749)
Q Consensus 550 PDG~~LASgs~------DGtI~IWDl~tgkli~-tL-----~gHs~~VtsIafSP~d~rlL-vSas~DGtIrIWDi~tG~ 616 (1749)
|||++|+++.. ...|..|++.....+. .. .........++++|.++++| ++...++.|.+|++....
T Consensus 264 pdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 264 FSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp TTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred CCCCEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEECCCCCCEEEEEECCCCEEEEEEEECCC
T ss_conf 99997899713578754227999985688714467676677767998647896489999999996799949999982886
Q ss_pred E
Q ss_conf 3
Q 000270 617 P 617 (1749)
Q Consensus 617 ~ 617 (1749)
.
T Consensus 344 l 344 (365)
T d1jofa_ 344 L 344 (365)
T ss_dssp E
T ss_pred C
T ss_conf 7
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.41 E-value=7.6e-09 Score=70.59 Aligned_cols=125 Identities=18% Similarity=0.093 Sum_probs=87.9
Q ss_pred CCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 40379970689877999997999999997087489999778980899971678985999996899679998389909999
Q 000270 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1749)
Q Consensus 233 ~~~i~tL~GH~~~VtsIaFSpDG~~LATGS~DGtIkIWDl~Tg~~i~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrIW 312 (1749)
.+.+.++-... .+..++++|||+++++...+++|..|+.... ...+......+.+++|+++++++++...++.+.+|
T Consensus 18 ~~v~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~ 94 (302)
T d2p4oa1 18 AKIITSFPVNT-FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVV 94 (302)
T ss_dssp EEEEEEECTTC-CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCEEEECCCCC-CCCCEEECCCCCEEEEECCCCEEEEEECCCC--EEEEECCCCCCCEEEECCCCCEEEEECCCCEEEEE
T ss_conf 20788888998-8478779999889999688998999908998--89997179985368986778869983289537888
Q ss_pred ECCCC--CEEEEE-CCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCC
Q ss_conf 88999--528996-0778855999952699962489963289909999768895
Q 000270 313 RLPDG--LPISVL-RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ 363 (1749)
Q Consensus 313 Dl~tg--k~i~tL-~gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~ 363 (1749)
+.... ...... .........+++.+++. ++++.+.++.+..++...+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~---~~v~~~~~~~i~~~~~~~~~ 145 (302)
T d2p4oa1 95 SLVKSDGTVETLLTLPDAIFLNGITPLSDTQ---YLTADSYRGAIWLIDVVQPS 145 (302)
T ss_dssp EEECTTSCEEEEEECTTCSCEEEEEESSSSE---EEEEETTTTEEEEEETTTTE
T ss_pred EECCCCCCEEECCCCCCCCCCCEEEECCCCC---EEEECCCCCCCEEEECCCCC
T ss_conf 7101111012102357863221667715797---87503565541024216873
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.33 E-value=1.6e-08 Score=68.47 Aligned_cols=252 Identities=8% Similarity=-0.020 Sum_probs=150.1
Q ss_pred CCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCC
Q ss_conf 89808999716789859999968996799983899099998899952899607788559999526999624899632899
Q 000270 273 ETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG 352 (1749)
Q Consensus 273 ~Tg~~i~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrIWDl~tgk~i~tL~gHs~~VtsIaFSPdg~~~~~LvSgS~DG 352 (1749)
...+.+..+.. ...+..++++|||+++++...++.|..|+.. +. ...+......+.+++|.++++ ++++...++
T Consensus 16 ~~~~v~~~~p~-~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~---l~v~~~~~~ 89 (302)
T d2p4oa1 16 APAKIITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGD---LVATGWNAD 89 (302)
T ss_dssp CCEEEEEEECT-TCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSC---EEEEEECTT
T ss_pred CCCCEEEECCC-CCCCCCEEECCCCCEEEEECCCCEEEEEECC-CC-EEEEECCCCCCCEEEECCCCC---EEEEECCCC
T ss_conf 86207888889-9884787799998899996889989999089-98-899971799853689867788---699832895
Q ss_pred CEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCC-
Q ss_conf 0999976889554525137999733487778888899999742799984799899994189809999389999989999-
Q 000270 353 TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQ- 431 (1749)
Q Consensus 353 tIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q- 431 (1749)
.+..|+............. .........+++.+++.++++.+.++.+..++...+.......
T Consensus 90 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~ 152 (302)
T d2p4oa1 90 SIPVVSLVKSDGTVETLLT-----------------LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEH 152 (302)
T ss_dssp SCEEEEEECTTSCEEEEEE-----------------CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred EEEEEEECCCCCCEEECCC-----------------CCCCCCCCEEEECCCCCEEEECCCCCCCEEEECCCCCCEEEECC
T ss_conf 3788871011110121023-----------------57863221667715797875035655410242168730367518
Q ss_pred CCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 98512431278998279998278722223334687788887555655579989999489809999368888885322211
Q 000270 432 PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 511 (1749)
Q Consensus 432 ~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~ 511 (1749)
.................+.+... .++++.+..+.|..+++.........
T Consensus 153 ~~~~~~~~~~~~~~~ngi~~~~~---------------------------~l~~~~~~~~~i~~~~~~~~~~~~~~---- 201 (302)
T d2p4oa1 153 PMLARSNSESVFPAANGLKRFGN---------------------------FLYVSNTEKMLLLRIPVDSTDKPGEP---- 201 (302)
T ss_dssp GGGSCSSTTCCSCSEEEEEEETT---------------------------EEEEEETTTTEEEEEEBCTTSCBCCC----
T ss_pred CCCCEEECCCCCCCCCCCCCCCC---------------------------CEEEECCCCCEEEECCCCCCCCCCCC----
T ss_conf 86401431576322432011698---------------------------30440378876986344333323453----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE--EECCCCCCEEEEE
Q ss_conf 11245799999999999999951126999980199985799899999679829999899995589--7128998839999
Q 000270 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVH--SLTGHTESTYVLD 589 (1749)
Q Consensus 512 ~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIafSPDG~~LASgs~DGtI~IWDl~tgkli~--tL~gHs~~VtsIa 589 (1749)
...........+++.++|+++++...++.|..++.. ++... .....-...++++
T Consensus 202 -----------------------~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~va 257 (302)
T d2p4oa1 202 -----------------------EIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVA 257 (302)
T ss_dssp -----------------------EEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEE
T ss_pred -----------------------CCCCCCCCCCCEEECCCCCEEEEECCCCCEEEECCC-CCEEEEEECCCCCCCCEEEE
T ss_conf -----------------------101589987523787999999997489918998789-97899996378988824899
Q ss_pred E---CCCCCCEEEEEEC
Q ss_conf 9---4899948999947
Q 000270 590 V---HPFNPRIAMSAGY 603 (1749)
Q Consensus 590 f---SP~d~rlLvSas~ 603 (1749)
| .+ +++.|+.++.
T Consensus 258 fg~~~~-D~~~Lyvtt~ 273 (302)
T d2p4oa1 258 FGQTEG-DCTAIYVVTN 273 (302)
T ss_dssp ECCSTT-TTTEEEEEEC
T ss_pred ECCCCC-CCCEEEEECC
T ss_conf 708788-7898999988
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.30 E-value=2e-08 Score=67.79 Aligned_cols=236 Identities=10% Similarity=0.002 Sum_probs=122.2
Q ss_pred CEEEEEECCCCCEEEEE-ECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE
Q ss_conf 77999997999999997-08748999977898089997167898599999689967999838990999988999528996
Q 000270 245 AVYCAIFDRSGRYVITG-SDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL 323 (1749)
Q Consensus 245 ~VtsIaFSpDG~~LATG-S~DGtIkIWDl~Tg~~i~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrIWDl~tgk~i~tL 323 (1749)
.-..++++++|++.++. +..+.|..++............-......+++++++.++++....+.|++++-.+...+...
T Consensus 15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~ 94 (260)
T d1rwia_ 15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF 94 (260)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC
T ss_pred CCCEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCEEEEECCCCCEEEEEEEECEEEEEEECCCEEEEEE
T ss_conf 87889996999999997189988999938996689743698668408999389988986310000355421120000001
Q ss_pred CCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 07788559999526999624899632899099997688955452513799973348777888889999974279998479
Q 000270 324 RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN 403 (1749)
Q Consensus 324 ~gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V~sIafSPD 403 (1749)
. ......++++.+++. ++++-.....+..++...... .... ........+++++++
T Consensus 95 ~-~~~~p~~iavd~~g~---i~v~d~~~~~~~~~~~~~~~~--~~~~------------------~~~~~~p~~i~~~~~ 150 (260)
T d1rwia_ 95 D-GLNYPEGLAVDTQGA---VYVADRGNNRVVKLAAGSKTQ--TVLP------------------FTGLNDPDGVAVDNS 150 (260)
T ss_dssp C-SCCSEEEEEECTTCC---EEEEEGGGTEEEEECTTCSSC--EECC------------------CCSCCSCCEEEECTT
T ss_pred E-EEEECCCCCCCCCCE---EEEECCCCCCCCCCCCCCCEE--EEEE------------------ECCCCCCCEEEECCC
T ss_conf 0-000000002455320---575033555321123222201--2232------------------036677520545489
Q ss_pred CCEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 98999941898099993899999899999851243127899827999827872222333468778888755565557998
Q 000270 404 GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDN 483 (1749)
Q Consensus 404 G~~LasGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~ 483 (1749)
+.++++...++.|..++.... .........-.....|++.+++ ++
T Consensus 151 g~~~v~~~~~~~i~~~d~~~~---------~~~~~~~~~~~~p~gi~~d~~g--------------------------~l 195 (260)
T d1rwia_ 151 GNVYVTDTDNNRVVKLEAESN---------NQVVLPFTDITAPWGIAVDEAG--------------------------TV 195 (260)
T ss_dssp CCEEEEEGGGTEEEEECTTTC---------CEEECCCSSCCSEEEEEECTTC--------------------------CE
T ss_pred CCEEEECCCCCCCCCCCCCCC---------EEEEEECCCCCCCCCCEEEEEE--------------------------EE
T ss_conf 988641025643322234310---------0122210114787631231000--------------------------13
Q ss_pred EEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 99994898099993688888853222111124579999999999999995112-69999801999857998999996798
Q 000270 484 IVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI-LPTPRGVNMIVWSLDNRFVLAAIMDC 562 (1749)
Q Consensus 484 LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l-~~h~~~VtsIafSPDG~~LASgs~DG 562 (1749)
+++....+.|..++...... ..+ ...-.....|+++++|.++++-..++
T Consensus 196 ~vsd~~~~~i~~~~~~~~~~------------------------------~~~~~~~~~~P~~i~~d~~g~l~vad~~~~ 245 (260)
T d1rwia_ 196 YVTEHNTNQVVKLLAGSTTS------------------------------TVLPFTGLNTPLAVAVDSDRTVYVADRGND 245 (260)
T ss_dssp EEEETTTTEEEEECTTCSCC------------------------------EECCCCSCCCEEEEEECTTCCEEEEEGGGT
T ss_pred EEEECCCCEEEEEECCCCEE------------------------------EEECCCCCCCEEEEEEECCCCEEEEECCCC
T ss_conf 43214899899996999769------------------------------997069989817999908999999979999
Q ss_pred EEEEEEC
Q ss_conf 2999989
Q 000270 563 RICVWNA 569 (1749)
Q Consensus 563 tI~IWDl 569 (1749)
+|+.++.
T Consensus 246 rI~~i~~ 252 (260)
T d1rwia_ 246 RVVKLTS 252 (260)
T ss_dssp EEEEECC
T ss_pred EEEEEEC
T ss_conf 8999959
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=3.7e-08 Score=65.94 Aligned_cols=238 Identities=11% Similarity=0.037 Sum_probs=136.1
Q ss_pred EEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCC---EEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCC
Q ss_conf 899997789808999716789859999968996799983899---09999889995289960778855999952699962
Q 000270 266 LVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDC---IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSV 342 (1749)
Q Consensus 266 tIkIWDl~Tg~~i~tL~gHs~~VtsLafSPDg~lLASGS~DG---tIrIWDl~tgk~i~tL~gHs~~VtsIaFSPdg~~~ 342 (1749)
.|.|-|.. |.....+..+...+...+|||||+.||...... .+.+.+...+.. ..+..+.+......|+|++..
T Consensus 20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~- 96 (269)
T d2hqsa1 20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSK- 96 (269)
T ss_dssp EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSE-
T ss_pred EEEEECCC-CCCCEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCE-EEEEEEECCCCCCEECCCCCE-
T ss_conf 99999289-997679865898426038878999899998152675134431136750-677642024543024488986-
Q ss_pred EEEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEE-EECCCCC--EEEE
Q ss_conf 489963289909999768895545251379997334877788888999997427999847998999-9418980--9999
Q 000270 343 YQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFV-TGSSDTL--ARVW 419 (1749)
Q Consensus 343 ~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V~sIafSPDG~~La-sGS~DGt--IrIW 419 (1749)
+++....++...++............ ...........+++++..++ +...++. |.+.
T Consensus 97 -i~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~ 156 (269)
T d2hqsa1 97 -LAFALSKTGSLNLYVMDLASGQIRQV-------------------TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKV 156 (269)
T ss_dssp -EEEEECTTSSCEEEEEETTTCCEEEC-------------------CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred -EEEEEECCCCCCEEECCCCCCCCEEE-------------------EECCCCCCCCCCCCCCCCCEECCCCCCCCEEEEE
T ss_conf -46764027864100002221220000-------------------1014421145434554433000012687438654
Q ss_pred ECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE-EEECCCCEEEEEC
Q ss_conf 389999989999985124312789982799982787222233346877888875556555799899-9948980999936
Q 000270 420 NACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIV-TCSRDGSAIIWIP 498 (1749)
Q Consensus 420 Dl~t~~~~~s~q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~Lv-SgS~DGtIrIWDl 498 (1749)
++... ....+...........|+|++ ..++ .....+...+|..
T Consensus 157 ~~~~~----------~~~~~~~~~~~~~~~~~spdg--------------------------~~~~~~~~~~~~~~i~~~ 200 (269)
T d2hqsa1 157 NINGG----------APQRITWEGSQNQDADVSSDG--------------------------KFMVMVSSNGGQQHIAKQ 200 (269)
T ss_dssp ETTSS----------CCEECCCSSSEEEEEEECTTS--------------------------SEEEEEEECSSCEEEEEE
T ss_pred ECCCC----------CCEEEECCCCCCCCCCCCCCC--------------------------CEEEEEEECCCCEEEEEE
T ss_conf 21331----------000100012222343223454--------------------------305778605880125676
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEC---CCEEEEEECCCCCEE
Q ss_conf 88888853222111124579999999999999995112699998019998579989999967---982999989999558
Q 000270 499 RSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM---DCRICVWNAADGSLV 575 (1749)
Q Consensus 499 ~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIafSPDG~~LASgs~---DGtI~IWDl~tgkli 575 (1749)
.... . ...............|||||+.|+..+. ...|+++++..+..
T Consensus 201 ~~~~----------------------------~-~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~- 250 (269)
T d2hqsa1 201 DLAT----------------------------G-GVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK- 250 (269)
T ss_dssp ETTT----------------------------C-CEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-
T ss_pred ECCC----------------------------C-CCEEEECCCCCCCEEECCCCCEEEEEECCCCCCEEEEEECCCCCE-
T ss_conf 0356----------------------------4-405850686544558989999999998179984799999999977-
Q ss_pred EEECCCCCCEEEEEECC
Q ss_conf 97128998839999948
Q 000270 576 HSLTGHTESTYVLDVHP 592 (1749)
Q Consensus 576 ~tL~gHs~~VtsIafSP 592 (1749)
..+....+.+...+|+|
T Consensus 251 ~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 251 ARLPATDGQVKFPAWSP 267 (269)
T ss_dssp EECCCSSSEEEEEEECC
T ss_pred EEEECCCCCEEEEEECC
T ss_conf 99857998588378289
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.26 E-value=4.9e-08 Score=65.15 Aligned_cols=238 Identities=8% Similarity=-0.040 Sum_probs=135.8
Q ss_pred CCEEEEEECCCCCEEEEE-ECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCC
Q ss_conf 985999996899679998-3899099998899952899607788559999526999624899632899099997688955
Q 000270 286 GDITDLAVSSNNALVASA-SNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF 364 (1749)
Q Consensus 286 ~~VtsLafSPDg~lLASG-S~DGtIrIWDl~tgk~i~tL~gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~ 364 (1749)
..-.++++.++|.+.++. +..+.|..++...................+++.+++. ++++....+.+++++......
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~---i~v~d~~~~~i~~~~~~~~~~ 90 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT---VYVTDFNNRVVTLAAGSNNQT 90 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCC---EEEEETTTEEEEECTTCSCCE
T ss_pred CCCCEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCEEEEECCCCC---EEEEEEEECEEEEEEECCCEE
T ss_conf 98788999699999999718998899993899668974369866840899938998---898631000035542112000
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCC
Q ss_conf 45251379997334877788888999997427999847998999941898099993899999899999851243127899
Q 000270 365 SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN 444 (1749)
Q Consensus 365 i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH~~ 444 (1749)
.... .....+.++++.+++.++++-.....+..++..... ..........
T Consensus 91 ~~~~---------------------~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~---------~~~~~~~~~~ 140 (260)
T d1rwia_ 91 VLPF---------------------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT---------QTVLPFTGLN 140 (260)
T ss_dssp ECCC---------------------CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSS---------CEECCCCSCC
T ss_pred EEEE---------------------EEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCE---------EEEEEECCCC
T ss_conf 0001---------------------000000000245532057503355532112322220---------1223203667
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 82799982787222233346877888875556555799899994898099993688888853222111124579999999
Q 000270 445 DVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMP 524 (1749)
Q Consensus 445 ~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~ 524 (1749)
....+++.+++ +.+++...++.|..++.......
T Consensus 141 ~p~~i~~~~~g--------------------------~~~v~~~~~~~i~~~d~~~~~~~-------------------- 174 (260)
T d1rwia_ 141 DPDGVAVDNSG--------------------------NVYVTDTDNNRVVKLEAESNNQV-------------------- 174 (260)
T ss_dssp SCCEEEECTTC--------------------------CEEEEEGGGTEEEEECTTTCCEE--------------------
T ss_pred CCCEEEECCCC--------------------------CEEEECCCCCCCCCCCCCCCEEE--------------------
T ss_conf 75205454899--------------------------88641025643322234310012--------------------
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECC
Q ss_conf 99999999511269999801999857998999996798299998999955897128998839999948999489999479
Q 000270 525 PQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYD 604 (1749)
Q Consensus 525 ~~~~~g~~i~~l~~h~~~VtsIafSPDG~~LASgs~DGtI~IWDl~tgkli~tL~gHs~~VtsIafSP~d~rlLvSas~D 604 (1749)
............+++.++|.++++....+.|..++.............-.....|++++ ++.++++-..+
T Consensus 175 ---------~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~-~g~l~vad~~~ 244 (260)
T d1rwia_ 175 ---------VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDS-DRTVYVADRGN 244 (260)
T ss_dssp ---------ECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECT-TCCEEEEEGGG
T ss_pred ---------EEECCCCCCCCCCEEEEEEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCEEEEEEEC-CCCEEEEECCC
T ss_conf ---------22101147876312310001343214899899996999769997069989817999908-99999997999
Q ss_pred CCEEEEEC
Q ss_conf 90999958
Q 000270 605 GKTIVWDI 612 (1749)
Q Consensus 605 GtIrIWDi 612 (1749)
++|+..+.
T Consensus 245 ~rI~~i~~ 252 (260)
T d1rwia_ 245 DRVVKLTS 252 (260)
T ss_dssp TEEEEECC
T ss_pred CEEEEEEC
T ss_conf 98999959
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.18 E-value=1.2e-07 Score=62.43 Aligned_cols=266 Identities=12% Similarity=0.094 Sum_probs=138.1
Q ss_pred CCCEEEEEECCCCCEEEEEEC-------CCEEEEEECCCCEEEEEECC----CCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 987799999799999999708-------74899997789808999716----7898599999689967999838990999
Q 000270 243 RNAVYCAIFDRSGRYVITGSD-------DRLVKIWSMETAYCLASCRG----HEGDITDLAVSSNNALVASASNDCIIRV 311 (1749)
Q Consensus 243 ~~~VtsIaFSpDG~~LATGS~-------DGtIkIWDl~Tg~~i~tL~g----Hs~~VtsLafSPDg~lLASGS~DGtIrI 311 (1749)
-...-.++|+++|+++++... ++.|..|+..++........ ..+.-..++|.+++.+|+++.....|..
T Consensus 17 ~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~ 96 (314)
T d1pjxa_ 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV 96 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred CCCCEEEEEECCCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEE
T ss_conf 98971739969999999987540234529999999899995999977765567885306999079998999977983999
Q ss_pred EECCCCCEEEEECC-CCC----CEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 98899952899607-788----5599995269996248996328990999976889554525137999733487778888
Q 000270 312 WRLPDGLPISVLRG-HTA----AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1749)
Q Consensus 312 WDl~tgk~i~tL~g-Hs~----~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~ 386 (1749)
.+..... ...+.. ..+ ..+.+++.++|. +.++.. .+.+..|+....
T Consensus 97 ~~~~g~~-~~~~~~~~~g~~~~~pndl~~d~~G~---lyvtd~-~~~~~~~~~~~~------------------------ 147 (314)
T d1pjxa_ 97 VQTDGTF-EEIAKKDSEGRRMQGCNDCAFDYEGN---LWITAP-AGEVAPADYTRS------------------------ 147 (314)
T ss_dssp EETTSCE-EECCSBCTTSCBCBCCCEEEECTTSC---EEEEEC-BCBCTTSCCCBT------------------------
T ss_pred EECCCCE-EEEEECCCCCCCCCCCCEEEECCCCC---EEEECC-CCCCCCCCCCCE------------------------
T ss_conf 9477747-99973343245457872789888998---999148-667543201100------------------------
Q ss_pred CCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 89999974279998479989999418980999938999998999998512431278998279998278722223334687
Q 000270 387 SAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSS 466 (1749)
Q Consensus 387 s~~~h~~~V~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~ 466 (1749)
.....+.| ..+.++|.... +. ..-...+.++|++++....
T Consensus 148 -~~~~~G~v--~~~~~dg~~~~----------~~--------------------~~~~~pNGi~~~~d~d~~~------- 187 (314)
T d1pjxa_ 148 -MQEKFGSI--YCFTTDGQMIQ----------VD--------------------TAFQFPNGIAVRHMNDGRP------- 187 (314)
T ss_dssp -TSSSCEEE--EEECTTSCEEE----------EE--------------------EEESSEEEEEEEECTTSCE-------
T ss_pred -ECCCCCEE--EEEEECCCEEE----------EE--------------------CCCCEEEEEEECCCCCCCE-------
T ss_conf -02688438--99952574037----------50--------------------7853221369978877630-------
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCEEE
Q ss_conf 788887555655579989999489809999368888885322211112457999999999999999511269-9998019
Q 000270 467 KEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP-TPRGVNM 545 (1749)
Q Consensus 467 ~~~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~-h~~~Vts 545 (1749)
..++++-+..+.|..|++......... ..+ ..+.. .......
T Consensus 188 --------------~~lyv~d~~~~~i~~~d~~~~g~~~~~----~~~-------------------~~~~~~~~~~pdG 230 (314)
T d1pjxa_ 188 --------------YQLIVAETPTKKLWSYDIKGPAKIENK----KVW-------------------GHIPGTHEGGADG 230 (314)
T ss_dssp --------------EEEEEEETTTTEEEEEEEEETTEEEEE----EEE-------------------EECCCCSSCEEEE
T ss_pred --------------EEEEEEEECCCCEEEEECCCCCCCCEE----EEE-------------------EECCCCCCCCCEE
T ss_conf --------------379998602431177611676543015----689-------------------9713356664102
Q ss_pred EEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCC
Q ss_conf 998579989999967982999989999558971289988399999489994899994799099995899
Q 000270 546 IVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1749)
Q Consensus 546 IafSPDG~~LASgs~DGtI~IWDl~tgkli~tL~gHs~~VtsIafSP~d~rlLvSas~DGtIrIWDi~t 614 (1749)
+++..+|++.++....+.|.+|+...+..+..+.......++++|.|+...++++.+..|.|...++..
T Consensus 231 iavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 231 MDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEECCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCC
T ss_conf 578347857999827999999969999799999799998789999289899999987899199997899
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=2.2e-07 Score=60.76 Aligned_cols=273 Identities=10% Similarity=0.050 Sum_probs=120.6
Q ss_pred ECCCCCEEEEEECCCEEEEEECCCCEEEEEECC---CCCCEEEEEECCCCCEEEEEE---------CCCEEEEEECCCCC
Q ss_conf 979999999970874899997789808999716---789859999968996799983---------89909999889995
Q 000270 251 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRG---HEGDITDLAVSSNNALVASAS---------NDCIIRVWRLPDGL 318 (1749)
Q Consensus 251 FSpDG~~LATGS~DGtIkIWDl~Tg~~i~tL~g---Hs~~VtsLafSPDg~lLASGS---------~DGtIrIWDl~tgk 318 (1749)
|.+++.++.. ..+|.|.+|++.++.....+.. ..-.+....||||+++|+... ..+.+.++|+.++.
T Consensus 24 W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~ 102 (465)
T d1xfda1 24 WISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD 102 (465)
T ss_dssp BSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred EECCCCEEEE-ECCCCEEEEECCCCCEEEEECCCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCCEEEEECCCCC
T ss_conf 9179848999-289969999878998899872764444553213898988869999845100476033528999856884
Q ss_pred EEEEEC--CCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 289960--778855999952699962489963289909999768895545251379997334877788888999997427
Q 000270 319 PISVLR--GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 396 (1749)
Q Consensus 319 ~i~tL~--gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V~ 396 (1749)
...... .....+....|+|+|+ .++-.. ++.|.+.+...+.......-........|...... .......-.
T Consensus 103 ~~~l~~~~~~~~~l~~~~wSPDG~---~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vy--eee~~~~~~ 176 (465)
T d1xfda1 103 PQSLDPPEVSNAKLQYAGWGPKGQ---QLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLY--EEEILKTHI 176 (465)
T ss_dssp CEECCCTTCCSCCCSBCCBCSSTT---CEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHH--HHTTSSSSE
T ss_pred EEECCCCCCCCCCCCEEEECCCCC---EEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEECCCCCHHH--HHHHCCCCC
T ss_conf 564157667764311002426785---699996-13299995489965897112676604436643100--123036643
Q ss_pred EEEECCCCCEEEEECC-CCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9998479989999418-980999938999998999998512431278998279998278722223334687788887555
Q 000270 397 CCAFNANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475 (1749)
Q Consensus 397 sIafSPDG~~LasGS~-DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~ 475 (1749)
.+-|||||+.||.... +..|..+.+.... ......+..+.+...|.
T Consensus 177 a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~--------------~~~~p~~~~~~Yp~~G~------------------- 223 (465)
T d1xfda1 177 AHWWSPDGTRLAYAAINDSRVPIMELPTYT--------------GSIYPTVKPYHYPKAGS------------------- 223 (465)
T ss_dssp EEEECTTSSEEEEEEEECTTSCEEEECCCS--------------SSSSCCCEEEECCBTTS-------------------
T ss_pred EEEECCCCCEEEEEEECCCCCCEEECCCCC--------------CCCCCEEEEEECCCCCC-------------------
T ss_conf 489779898689999536666146412344--------------54443133453025688-------------------
Q ss_pred CCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEE
Q ss_conf 65557998999948980999936888888532221111245799999999999999951126999980199985799899
Q 000270 476 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFV 555 (1749)
Q Consensus 476 ~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIafSPDG~~L 555 (1749)
.+ ....+.++++.++...... .+.........-+..+.|+++++++
T Consensus 224 -----~n------p~~~l~v~d~~~~~~~~~~-----------------------~~~~~~~~~~~y~~~~~W~~d~~~~ 269 (465)
T d1xfda1 224 -----EN------PSISLHVIGLNGPTHDLEM-----------------------MPPDDPRMREYYITMVKWATSTKVA 269 (465)
T ss_dssp -----CC------CEEEEEEEESSSSCCCEEC-----------------------CCCCCGGGSSEEEEEEEESSSSEEE
T ss_pred -----CC------CCEEEEEEECCCCCEEEEE-----------------------ECCCCCCCCCCEEEEEEECCCCEEE
T ss_conf -----89------7213799836898178999-----------------------5257676666304566875799389
Q ss_pred EEEEC----CCEEEEEECCCCCEEEEECCC-CCCE----EEEEECCCCCCE
Q ss_conf 99967----982999989999558971289-9883----999994899948
Q 000270 556 LAAIM----DCRICVWNAADGSLVHSLTGH-TEST----YVLDVHPFNPRI 597 (1749)
Q Consensus 556 ASgs~----DGtI~IWDl~tgkli~tL~gH-s~~V----tsIafSP~d~rl 597 (1749)
+.... ...|.++|..+|++...+... ...| ....|++++..+
T Consensus 270 ~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~ 320 (465)
T d1xfda1 270 VTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKF 320 (465)
T ss_dssp EEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSE
T ss_pred EEEECCCCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCEEECCCCCEE
T ss_conf 999741003013799707999278778972785173567860574689805
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.11 E-value=2.7e-07 Score=60.10 Aligned_cols=249 Identities=12% Similarity=0.064 Sum_probs=128.3
Q ss_pred CCCEEEEEECCCCCEEEEEEC-------CCEEEEEECCCCCEEEEECC----CCCCEEEEEECCCCCCCEEEEEECCCCC
Q ss_conf 898599999689967999838-------99099998899952899607----7885599995269996248996328990
Q 000270 285 EGDITDLAVSSNNALVASASN-------DCIIRVWRLPDGLPISVLRG----HTAAVTAIAFSPRPGSVYQLLSSSDDGT 353 (1749)
Q Consensus 285 s~~VtsLafSPDg~lLASGS~-------DGtIrIWDl~tgk~i~tL~g----Hs~~VtsIaFSPdg~~~~~LvSgS~DGt 353 (1749)
-.....++|.++|+++++... ++.|..|+..++........ ..+....++|.++++ .++++.....
T Consensus 17 ~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~---~l~vad~~~~ 93 (314)
T d1pjxa_ 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN---QLFVADMRLG 93 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS---EEEEEETTTE
T ss_pred CCCCEEEEEECCCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEECCCC---EEEEEECCCE
T ss_conf 9897173996999999998754023452999999989999599997776556788530699907999---8999977983
Q ss_pred EEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 99997688955452513799973348777888889999974279998479989999418980999938999998999998
Q 000270 354 CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN 433 (1749)
Q Consensus 354 IrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q~~ 433 (1749)
|..++............ . ....-...+.+++.++|.+.++... +....|+..
T Consensus 94 i~~~~~~g~~~~~~~~~-~---------------~g~~~~~pndl~~d~~G~lyvtd~~-~~~~~~~~~----------- 145 (314)
T d1pjxa_ 94 LLVVQTDGTFEEIAKKD-S---------------EGRRMQGCNDCAFDYEGNLWITAPA-GEVAPADYT----------- 145 (314)
T ss_dssp EEEEETTSCEEECCSBC-T---------------TSCBCBCCCEEEECTTSCEEEEECB-CBCTTSCCC-----------
T ss_pred EEEEECCCCEEEEEECC-C---------------CCCCCCCCCEEEECCCCCEEEECCC-CCCCCCCCC-----------
T ss_conf 99994777479997334-3---------------2454578727898889989991486-675432011-----------
Q ss_pred CCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 51243127899827999827872222333468778888755565557998999948980999936888888532221111
Q 000270 434 HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQA 513 (1749)
Q Consensus 434 ~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~ 513 (1749)
....... ..+.....||.+..+..
T Consensus 146 ---~~~~~~~--------------------------------------G~v~~~~~dg~~~~~~~--------------- 169 (314)
T d1pjxa_ 146 ---RSMQEKF--------------------------------------GSIYCFTTDGQMIQVDT--------------- 169 (314)
T ss_dssp ---BTTSSSC--------------------------------------EEEEEECTTSCEEEEEE---------------
T ss_pred ---CEECCCC--------------------------------------CEEEEEEECCCEEEEEC---------------
T ss_conf ---0002688--------------------------------------43899952574037507---------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC-----EEEEEECCCEEEEEECCCCCEEE------EECC-C
Q ss_conf 2457999999999999999511269999801999857998-----99999679829999899995589------7128-9
Q 000270 514 YHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR-----FVLAAIMDCRICVWNAADGSLVH------SLTG-H 581 (1749)
Q Consensus 514 ~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIafSPDG~-----~LASgs~DGtI~IWDl~tgkli~------tL~g-H 581 (1749)
.....+.++|++++. ++++-+..+.|+.|++.....+. .+.+ .
T Consensus 170 -------------------------~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~ 224 (314)
T d1pjxa_ 170 -------------------------AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH 224 (314)
T ss_dssp -------------------------EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred -------------------------CCCEEEEEEECCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCC
T ss_conf -------------------------8532213699788776303799986024311776116765430156899713356
Q ss_pred CCCEEEEEECCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEE-------C-CCCCEE-EEECCCCEEEEEEC
Q ss_conf 98839999948999489999479909999589992389986000-------2-699999-99908981999988
Q 000270 582 TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISR-------F-RDGASI-ILSDDVGQLYILNT 646 (1749)
Q Consensus 582 s~~VtsIafSP~d~rlLvSas~DGtIrIWDi~tG~~l~tl~~~~-------f-sDG~~L-Asgs~DG~I~Iwdl 646 (1749)
....-.+++.. ++++.++....+.|.+|+...+..+..+.... | +|++.| ++....|.|+.+++
T Consensus 225 ~~~pdGiavD~-~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~ 297 (314)
T d1pjxa_ 225 EGGADGMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp SCEEEEEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred CCCCEEEEEEC-CCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEC
T ss_conf 66410257834-78579998279999999699997999997999987899992898999999878991999978
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.08 E-value=3.6e-07 Score=59.26 Aligned_cols=241 Identities=9% Similarity=0.114 Sum_probs=118.7
Q ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCC------CCCEEEEEECCC-CCEEEEE-ECCCEEEEEECCC
Q ss_conf 7799999799999999708748999977898089997167------898599999689-9679998-3899099998899
Q 000270 245 AVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGH------EGDITDLAVSSN-NALVASA-SNDCIIRVWRLPD 316 (1749)
Q Consensus 245 ~VtsIaFSpDG~~LATGS~DGtIkIWDl~Tg~~i~tL~gH------s~~VtsLafSPD-g~lLASG-S~DGtIrIWDl~t 316 (1749)
.-..++++++|+++++-.....|++|+.. |..+..+... ...-..+++..+ +..+++. +.++.|.+++. .
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~ 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred CCCEEEECCCCCEEEEECCCCEEEEEECC-CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC-C
T ss_conf 90079994999899997998989999699-999998166578866422663000123445520000477531000002-5
Q ss_pred CCEEEEEC-CCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 95289960-77885599995269996248996328990999976889554525137999733487778888899999742
Q 000270 317 GLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395 (1749)
Q Consensus 317 gk~i~tL~-gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V 395 (1749)
+.....+. ........+++.+++. ++++....+.+.+++.. +..+..+.. ..+....
T Consensus 102 g~~~~~~~~~~~~~p~~~avd~~G~---i~v~~~~~~~~~~~~~~-g~~~~~~g~------------------~~~~~~~ 159 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPRGVTVDNKGR---IIVVECKVMRVIIFDQN-GNVLHKFGC------------------SKHLEFP 159 (279)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSC---EEEEETTTTEEEEECTT-SCEEEEEEC------------------TTTCSSE
T ss_pred CCCEEECCCCCCCCCCEECCCCCCC---EEEEEECCCEEEEECCC-CCEEECCCC------------------CCCCCCC
T ss_conf 6302403888642542000014784---79996326325676268-750100220------------------0102566
Q ss_pred EEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79998479989999418980999938999998999998512431278998279998278722223334687788887555
Q 000270 396 FCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475 (1749)
Q Consensus 396 ~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~ 475 (1749)
..+++.+++..+++....+.|.+|+... ..+..+
T Consensus 160 ~~i~~d~~g~i~v~d~~~~~V~~~d~~G----------~~~~~~------------------------------------ 193 (279)
T d1q7fa_ 160 NGVVVNDKQEIFISDNRAHCVKVFNYEG----------QYLRQI------------------------------------ 193 (279)
T ss_dssp EEEEECSSSEEEEEEGGGTEEEEEETTC----------CEEEEE------------------------------------
T ss_pred CEEEECCCEEEEEEECCCCCEEEEECCC----------CEEEEE------------------------------------
T ss_conf 2432012001786201355100230479----------444530------------------------------------
Q ss_pred CCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEE
Q ss_conf 65557998999948980999936888888532221111245799999999999999951126999980199985799899
Q 000270 476 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFV 555 (1749)
Q Consensus 476 ~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIafSPDG~~L 555 (1749)
+. .+.......+++.++|+.+
T Consensus 194 ------------g~-----------------------------------------------~g~~~~P~giavD~~G~i~ 214 (279)
T d1q7fa_ 194 ------------GG-----------------------------------------------EGITNYPIGVGINSNGEIL 214 (279)
T ss_dssp ------------SC-----------------------------------------------TTTSCSEEEEEECTTCCEE
T ss_pred ------------CC-----------------------------------------------CCCCCCCCCCCCCCCCEEE
T ss_conf ------------11-----------------------------------------------3211487623231478699
Q ss_pred EEEEC-CCEEEEEECCCCCEEEEECC--CCCCEEEEEECCCCCCEEEEEECCCCEEEEECCCCCE
Q ss_conf 99967-98299998999955897128--9988399999489994899994799099995899923
Q 000270 556 LAAIM-DCRICVWNAADGSLVHSLTG--HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIP 617 (1749)
Q Consensus 556 ASgs~-DGtI~IWDl~tgkli~tL~g--Hs~~VtsIafSP~d~rlLvSas~DGtIrIWDi~tG~~ 617 (1749)
++-.. +..|.+|+. +|+.+.++.. .......|++.+ ++.+++ +..+..|++|......+
T Consensus 215 Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~-dG~l~V-~~~n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 215 IADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMD-DGSVVL-ASKDYRLYIYRYVQLAP 276 (279)
T ss_dssp EEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEET-TTEEEE-EETTTEEEEEECSCCCC
T ss_pred EEECCCCCEEEEECC-CCCEEEEEECCCCCCCEEEEEEEC-CCCEEE-EECCCEEEEEEEEEECC
T ss_conf 997899808999999-999999996888889883799908-991999-91899699987220357
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.06 E-value=4.2e-07 Score=58.81 Aligned_cols=33 Identities=12% Similarity=0.252 Sum_probs=17.4
Q ss_pred CCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCC
Q ss_conf 9801999857998999996-79829999899995
Q 000270 541 RGVNMIVWSLDNRFVLAAI-MDCRICVWNAADGS 573 (1749)
Q Consensus 541 ~~VtsIafSPDG~~LASgs-~DGtI~IWDl~tgk 573 (1749)
.+...++|+|+++++++.. .++.|.+|+...+.
T Consensus 193 ~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~ 226 (365)
T d1jofa_ 193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT 226 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred CCEEEEEECCCCCEEEEECCCCCEEEEEEECCCC
T ss_conf 7408999889986699951589989999955987
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=4.3e-07 Score=58.75 Aligned_cols=69 Identities=12% Similarity=0.024 Sum_probs=31.4
Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEEC---CCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEE
Q ss_conf 37997068987799999799999999708---74899997789808999716789859999968996799983
Q 000270 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSD---DRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS 304 (1749)
Q Consensus 235 ~i~tL~GH~~~VtsIaFSpDG~~LATGS~---DGtIkIWDl~Tg~~i~tL~gHs~~VtsLafSPDg~lLASGS 304 (1749)
..+.+..+...+...+|||||+.||.... ...+.+.+..++.. ..+..+.+.+....|+|+++.++...
T Consensus 30 ~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~ 101 (269)
T d2hqsa1 30 NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFAL 101 (269)
T ss_dssp SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred CCEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCE-EEEEEEECCCCCCEECCCCCEEEEEE
T ss_conf 7679865898426038878999899998152675134431136750-67764202454302448898646764
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=6.3e-07 Score=57.62 Aligned_cols=112 Identities=9% Similarity=-0.027 Sum_probs=74.3
Q ss_pred CCEEEEEECCCCCEEEEEE---------CCCEEEEEECCCCEEEEEE--CCCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 8779999979999999970---------8748999977898089997--1678985999996899679998389909999
Q 000270 244 NAVYCAIFDRSGRYVITGS---------DDRLVKIWSMETAYCLASC--RGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1749)
Q Consensus 244 ~~VtsIaFSpDG~~LATGS---------~DGtIkIWDl~Tg~~i~tL--~gHs~~VtsLafSPDg~lLASGS~DGtIrIW 312 (1749)
-.+....|||||++|+... ..+.+.|+|+.++...... ......+....|||||+.||... ++.|.+.
T Consensus 61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~ 139 (465)
T d1xfda1 61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYC 139 (465)
T ss_dssp TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEE
T ss_pred CCCCEEEECCCCCEEEEEECCCCEEEEECCCCEEEEECCCCCEEECCCCCCCCCCCCEEEECCCCCEEEEEE-CCEEEEE
T ss_conf 553213898988869999845100476033528999856884564157667764311002426785699996-1329999
Q ss_pred ECCCCCEEEEECC-CCCC-----------------EEEEEECCCCCCCEEEEEEC-CCCCEEEEEC
Q ss_conf 8899952899607-7885-----------------59999526999624899632-8990999976
Q 000270 313 RLPDGLPISVLRG-HTAA-----------------VTAIAFSPRPGSVYQLLSSS-DDGTCRIWDA 359 (1749)
Q Consensus 313 Dl~tgk~i~tL~g-Hs~~-----------------VtsIaFSPdg~~~~~LvSgS-~DGtIrIWDl 359 (1749)
+..++..++.... ..+. -.++.|+|||+ .|+... .+..|..+.+
T Consensus 140 ~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk---~iaf~~~D~s~V~~~~~ 202 (465)
T d1xfda1 140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT---RLAYAAINDSRVPIMEL 202 (465)
T ss_dssp SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS---EEEEEEEECTTSCEEEE
T ss_pred ECCCCCEEEEECCCCCCEEECCCCCHHHHHHHCCCCCEEEECCCCC---EEEEEEECCCCCCEEEC
T ss_conf 5489965897112676604436643100123036643489779898---68999953666614641
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.92 E-value=1.4e-06 Score=55.17 Aligned_cols=103 Identities=12% Similarity=0.097 Sum_probs=69.4
Q ss_pred EECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC----CEEEEEE
Q ss_conf 970689877999997999999997087489999778980899971678985999996899679998389----9099998
Q 000270 238 RVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND----CIIRVWR 313 (1749)
Q Consensus 238 tL~GH~~~VtsIaFSpDG~~LATGS~DGtIkIWDl~Tg~~i~tL~gHs~~VtsLafSPDg~lLASGS~D----GtIrIWD 313 (1749)
.+......+-.++|+++|++.++-...+.|..|+..++.....+.........|+|+++|.++++...+ +.|...+
T Consensus 34 ~~~~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~ 113 (319)
T d2dg1a1 34 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT 113 (319)
T ss_dssp EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred EECCCCCCCEECEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEC
T ss_conf 81468867470789999999999779999999989999599999489987038999999999999568973110499873
Q ss_pred CCCCCEEEEECC--CCCCEEEEEECCCCC
Q ss_conf 899952899607--788559999526999
Q 000270 314 LPDGLPISVLRG--HTAAVTAIAFSPRPG 340 (1749)
Q Consensus 314 l~tgk~i~tL~g--Hs~~VtsIaFSPdg~ 340 (1749)
...+........ .......+++.++|.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~nd~~~d~~G~ 142 (319)
T d2dg1a1 114 ENGDNLQDIIEDLSTAYCIDDMVFDSKGG 142 (319)
T ss_dssp TTSCSCEEEECSSSSCCCEEEEEECTTSC
T ss_pred CCCCEEEEECCCCCCCCCCCCEEEEECCC
T ss_conf 89963644426777555875226773065
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.91 E-value=1.5e-06 Score=55.01 Aligned_cols=105 Identities=18% Similarity=0.208 Sum_probs=71.0
Q ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC--CCCCCEEEEEECCCCCCEEEEEEC-CCCEEEEECCCCCE
Q ss_conf 980199985799899999679829999899995589712--899883999994899948999947-99099995899923
Q 000270 541 RGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT--GHTESTYVLDVHPFNPRIAMSAGY-DGKTIVWDIWEGIP 617 (1749)
Q Consensus 541 ~~VtsIafSPDG~~LASgs~DGtI~IWDl~tgkli~tL~--gHs~~VtsIafSP~d~rlLvSas~-DGtIrIWDi~tG~~ 617 (1749)
.....+++.+++..+++....+.|++|+. +|+.+.++. +.......|++.+ +++++++-.. ++.|.+++. +|+.
T Consensus 157 ~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~~-~G~~ 233 (279)
T d1q7fa_ 157 EFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQ-DGQL 233 (279)
T ss_dssp SSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECT-TSCE
T ss_pred CCCCEEEECCCEEEEEEECCCCCEEEEEC-CCCEEEEECCCCCCCCCCCCCCCC-CCEEEEEECCCCCEEEEECC-CCCE
T ss_conf 56624320120017862013551002304-794445301132114876232314-78699997899808999999-9999
Q ss_pred EEEEEEEE----------CCCCCEEEEECCCCEEEEEECCCC
Q ss_conf 89986000----------269999999908981999988998
Q 000270 618 IRIYEISR----------FRDGASIILSDDVGQLYILNTGQG 649 (1749)
Q Consensus 618 l~tl~~~~----------fsDG~~LAsgs~DG~I~Iwdl~sG 649 (1749)
+.++.... -+||.+ ++++.+..|.+|...+.
T Consensus 234 ~~~~~~~~~~~~p~~vav~~dG~l-~V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 234 ISALESKVKHAQCFDVALMDDGSV-VLASKDYRLYIYRYVQL 274 (279)
T ss_dssp EEEEEESSCCSCEEEEEEETTTEE-EEEETTTEEEEEECSCC
T ss_pred EEEEECCCCCCCEEEEEEECCCCE-EEEECCCEEEEEEEEEE
T ss_conf 999968888898837999089919-99918996999872203
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.89 E-value=1.7e-06 Score=54.61 Aligned_cols=237 Identities=11% Similarity=-0.011 Sum_probs=133.5
Q ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEECC----CCCEEEEECCC
Q ss_conf 98599999689967999838990999988999528996077885599995269996248996328----99099997688
Q 000270 286 GDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD----DGTCRIWDARY 361 (1749)
Q Consensus 286 ~~VtsLafSPDg~lLASGS~DGtIrIWDl~tgk~i~tL~gHs~~VtsIaFSPdg~~~~~LvSgS~----DGtIrIWDl~t 361 (1749)
..+..++|.++++++++-...+.|..|+..++.....+.........++|.+++. ++++... .+.+...+...
T Consensus 40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~---l~va~~~~~~~~~~i~~~~~~~ 116 (319)
T d2dg1a1 40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGR---LFVCYLGDFKSTGGIFAATENG 116 (319)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSC---EEEEECTTSSSCCEEEEECTTS
T ss_pred CCCEECEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCC---EEEEECCCCCCCEEEEEECCCC
T ss_conf 6747078999999999977999999998999959999948998703899999999---9999568973110499873899
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECC------CCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 955452513799973348777888889999974279998479989999418------98099993899999899999851
Q 000270 362 SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS------DTLARVWNACKPNTDDSDQPNHE 435 (1749)
Q Consensus 362 g~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V~sIafSPDG~~LasGS~------DGtIrIWDl~t~~~~~s~q~~~~ 435 (1749)
......... ......+..+++.++|.+.++... .+.+..++.. ...
T Consensus 117 ~~~~~~~~~------------------~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d----------g~~ 168 (319)
T d2dg1a1 117 DNLQDIIED------------------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD----------FRT 168 (319)
T ss_dssp CSCEEEECS------------------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT----------SCC
T ss_pred CEEEEECCC------------------CCCCCCCCCEEEEECCCEEECCCCCCCCCCCCEEEEEECC----------CCE
T ss_conf 636444267------------------7755587522677306532001354002574215788416----------633
Q ss_pred EEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEEECCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 24312789982799982787222233346877888875556555799-89999489809999368888885322211112
Q 000270 436 IDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHD-NIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 514 (1749)
Q Consensus 436 i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~-~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~ 514 (1749)
+..+...-...+.++|++++ + ++++-+..+.|..|++............
T Consensus 169 ~~~~~~~~~~pnGia~s~dg--------------------------~~lyvad~~~~~I~~~d~~~~g~~~~~~~~---- 218 (319)
T d2dg1a1 169 VTPIIQNISVANGIALSTDE--------------------------KVLWVTETTANRLHRIALEDDGVTIQPFGA---- 218 (319)
T ss_dssp EEEEEEEESSEEEEEECTTS--------------------------SEEEEEEGGGTEEEEEEECTTSSSEEEEEE----
T ss_pred EEEEEECCCEEEEEEECCCC--------------------------CEEEEECCCCCCEEEEEECCCCCEECCCCC----
T ss_conf 57886123301000101222--------------------------127874046891479997699836202463----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC------CCCCCEEEE
Q ss_conf 45799999999999999951126999980199985799899999679829999899995589712------899883999
Q 000270 515 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT------GHTESTYVL 588 (1749)
Q Consensus 515 ~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIafSPDG~~LASgs~DGtI~IWDl~tgkli~tL~------gHs~~VtsI 588 (1749)
..............+++..+|++.++....+.|.+|+. .|+.+..+. ++...++++
T Consensus 219 -----------------~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~ 280 (319)
T d2dg1a1 219 -----------------TIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHP 280 (319)
T ss_dssp -----------------EEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEE
T ss_pred -----------------EEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEECC-CCCEEEEEECCCCCCCCCCEEEEE
T ss_conf -----------------33312577641036417389999999848998999979-995988996887577867504667
Q ss_pred EECCCCCCEEEEE
Q ss_conf 9948999489999
Q 000270 589 DVHPFNPRIAMSA 601 (1749)
Q Consensus 589 afSP~d~rlLvSa 601 (1749)
+|.+....++++.
T Consensus 281 ~~~~~~~~~~~t~ 293 (319)
T d2dg1a1 281 QFIPGTNQLIICS 293 (319)
T ss_dssp EECTTSCEEEEEE
T ss_pred EEECCCCEEEEEC
T ss_conf 7807998899985
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.49 E-value=2.6e-05 Score=46.65 Aligned_cols=93 Identities=11% Similarity=0.101 Sum_probs=58.9
Q ss_pred EECCC--CCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEEC-C-----CEEEEEECCCCCEEE
Q ss_conf 99799--999999708748999977898089997167898599999689967999838-9-----909999889995289
Q 000270 250 IFDRS--GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN-D-----CIIRVWRLPDGLPIS 321 (1749)
Q Consensus 250 aFSpD--G~~LATGS~DGtIkIWDl~Tg~~i~tL~gHs~~VtsLafSPDg~lLASGS~-D-----GtIrIWDl~tgk~i~ 321 (1749)
..+|| |+.+|-.+. +.|.+.++.++.. ..|..+.+.+...+|||||+.||.... + ..|.+++..++....
T Consensus 5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCC-DDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp CEEEEEETTEEEEEET-TEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred CCCCCCCCCEEEEEEC-CCEEEEECCCCCE-EEEECCCCCCCCEEECCCCCEEEEEEEECCCCCCEEEEEEEECCCCEEE
T ss_conf 2588879999999909-9689998999987-9976699852677987899989999862898772289999825995288
Q ss_pred EEC------CCCCCEEEEEECCCCCCCEEEEE
Q ss_conf 960------77885599995269996248996
Q 000270 322 VLR------GHTAAVTAIAFSPRPGSVYQLLS 347 (1749)
Q Consensus 322 tL~------gHs~~VtsIaFSPdg~~~~~LvS 347 (1749)
... ..........|+|+++ .|+.
T Consensus 83 lt~~~~~~~~~~~~~~~~~~spdg~---~l~~ 111 (281)
T d1k32a2 83 ITYFSGKSTGRRMFTDVAGFDPDGN---LIIS 111 (281)
T ss_dssp CCCCCEEEETTEECSEEEEECTTCC---EEEE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCC---EEEE
T ss_conf 6416887547644434310279887---7999
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.27 E-value=8.4e-05 Score=43.22 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=40.6
Q ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEC-CCCCCEEEEEEC
Q ss_conf 80199985799899999679829999899995589712899883999994-899948999947
Q 000270 542 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH-PFNPRIAMSAGY 603 (1749)
Q Consensus 542 ~VtsIafSPDG~~LASgs~DGtI~IWDl~tgkli~tL~gHs~~VtsIafS-P~d~rlLvSas~ 603 (1749)
....+++..+|.+.++.-..+.|..|+. +|+.+..+.-....+++++|- ++...+++|...
T Consensus 200 ~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 200 GMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp EEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred CCCCEEECCCCCEEEEEECCCCEEEECC-CCCEEEEECCCCCCEEEEEEECCCCCEEEEEECC
T ss_conf 6632678699998953207884688569-9928668638998527989828999999999787
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=98.12 E-value=0.00017 Score=41.13 Aligned_cols=369 Identities=12% Similarity=0.028 Sum_probs=160.7
Q ss_pred CCCEEEEEECCCEEEEEEC-CCCEEEEEECCCC-----------CCEEEEEECCC----CCEEEEEECCCEEEEEECCCC
Q ss_conf 9999999708748999977-8980899971678-----------98599999689----967999838990999988999
Q 000270 254 SGRYVITGSDDRLVKIWSM-ETAYCLASCRGHE-----------GDITDLAVSSN----NALVASASNDCIIRVWRLPDG 317 (1749)
Q Consensus 254 DG~~LATGS~DGtIkIWDl-~Tg~~i~tL~gHs-----------~~VtsLafSPD----g~lLASGS~DGtIrIWDl~tg 317 (1749)
+|.+.++.+.++.|...+. .+|+.+-.+.... ..-..+++.++ ..+|+.++.|+.|.-.|..+|
T Consensus 62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG 141 (596)
T d1w6sa_ 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (596)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEECCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCEEEECCCCC
T ss_conf 99999951789968999579988778870387886434321356666516983279988629999807987685436568
Q ss_pred CEEEEECCCC----CCEEE-EEECCCCCCCEEEEEEC------CCCCEEEEECCCCCCCCEEECCCCCCCC---------
Q ss_conf 5289960778----85599-99526999624899632------8990999976889554525137999733---------
Q 000270 318 LPISVLRGHT----AAVTA-IAFSPRPGSVYQLLSSS------DDGTCRIWDARYSQFSPRIYIPRPSDAV--------- 377 (1749)
Q Consensus 318 k~i~tL~gHs----~~Vts-IaFSPdg~~~~~LvSgS------~DGtIrIWDl~tg~~i~~i~i~~~~~~~--------- 377 (1749)
+.+..+.... ..++. ..+. ++ .++++. ..|.|.-+|+.+++.+.++....+....
T Consensus 142 ~~~w~~~~~d~~~~~~~t~~P~v~-~~----~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~ 216 (596)
T d1w6sa_ 142 ETVWKVENSDIKVGSTLTIAPYVV-KD----KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIK 216 (596)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-TT----EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred CEECCCCCCCCCCCCCCCCCCCEE-CC----EEEEEECCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 410231014655564224588177-77----5899302344433573289887888577886535886554555445433
Q ss_pred ---CCC------CCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCC----------------CEEEEECCCCCCCCCCCC
Q ss_conf ---487------7788888999997427999847998999941898----------------099993899999899999
Q 000270 378 ---AGR------NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDT----------------LARVWNACKPNTDDSDQP 432 (1749)
Q Consensus 378 ---sg~------~~~~~~s~~~h~~~V~sIafSPDG~~LasGS~DG----------------tIrIWDl~t~~~~~s~q~ 432 (1749)
.+. ..............-..+++.+...++..+..+. .|.-.|+.+++
T Consensus 217 ~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~------- 289 (596)
T d1w6sa_ 217 NPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGE------- 289 (596)
T ss_dssp CGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCC-------
T ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------
T ss_conf 3334545546666788733347874225622156777254056455565202356533344430102635500-------
Q ss_pred CCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCC----
Q ss_conf 8512431278998279998278722223334687788887555655579989999489809999368888885322----
Q 000270 433 NHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAA---- 508 (1749)
Q Consensus 433 ~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~---- 508 (1749)
.+-.+......+... +.... ..+.+.. ...-.....++....+|.+.++|..+++.+....
T Consensus 290 --~~W~~Q~~~~D~Wd~----d~~~~-~~l~d~~--------~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~ 354 (596)
T d1w6sa_ 290 --AKFGYQKTPHDEWDY----AGVNV-MMLSEQK--------DKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDT 354 (596)
T ss_dssp --EEEEEESSTTCSSCC----CCCCC-CEEEEEE--------CTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred --CCCCCCCEECCCCCC----CCCCC-EEEEECC--------CCCCCCCCCEECCCCCCCEEEECCCCCCEEEECCCCCC
T ss_conf --100124030256577----65421-0653103--------33355532100146543225406778825540144665
Q ss_pred -CCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCC-C--CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCC-
Q ss_conf -211112457999999999--9999995112699-9--98019998579989999967982999989999558971289-
Q 000270 509 -RWTQAYHLKVPPPPMPPQ--PPRGGPRQRILPT-P--RGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH- 581 (1749)
Q Consensus 509 -~~~~~~~l~v~~~~~~~~--~~~g~~i~~l~~h-~--~~VtsIafSPDG~~LASgs~DGtI~IWDl~tgkli~tL~gH- 581 (1749)
.|..........+..... .........+.+. . ..-..++++|+..+++....+........ .... ..+.
T Consensus 355 ~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~-~~~~---~~g~~ 430 (596)
T d1w6sa_ 355 VNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPF-MLPY---KAGQF 430 (596)
T ss_dssp CCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEEC-CCCC---CTTSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC-CCCC---CCCCC
T ss_conf 6544542112453212741023577655357415444344676554777755972353343213543-4555---45653
Q ss_pred -CCCEEEEEECCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEE------CC-CCCEEEEECCCCEEEEEECCCCCCCC
Q ss_conf -98839999948999489999479909999589992389986000------26-99999999089819999889984223
Q 000270 582 -TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISR------FR-DGASIILSDDVGQLYILNTGQGESQK 653 (1749)
Q Consensus 582 -s~~VtsIafSP~d~rlLvSas~DGtIrIWDi~tG~~l~tl~~~~------fs-DG~~LAsgs~DG~I~Iwdl~sGe~~k 653 (1749)
.+........|.+... ..-.-|.|.-||+.+|+.+-...... .. .|.++..++.||.++.+|..+|+.+-
T Consensus 431 ~~g~~~~~~~~~~g~~~--~~~~~G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW 508 (596)
T d1w6sa_ 431 FVGATLNMYPGPKGDRQ--NYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLW 508 (596)
T ss_dssp CCCEEEEEEECTTSBTT--TTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCCCCCCCCCCCCCCCC--CCCCCCEEEEEECCCCCEECCCCCCCCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEE
T ss_conf 11442320247566745--5788553899807888562332788887441468669979997899959999999984836
Q ss_pred CC
Q ss_conf 54
Q 000270 654 DA 655 (1749)
Q Consensus 654 ~~ 655 (1749)
..
T Consensus 509 ~~ 510 (596)
T d1w6sa_ 509 KF 510 (596)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.04 E-value=0.00025 Score=40.02 Aligned_cols=88 Identities=14% Similarity=-0.010 Sum_probs=37.5
Q ss_pred EEECC-CCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECC--
Q ss_conf 99979-999999970874899997789808999716789859999968996799983899099998899952899607--
Q 000270 249 AIFDR-SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRG-- 325 (1749)
Q Consensus 249 IaFSp-DG~~LATGS~DGtIkIWDl~Tg~~i~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrIWDl~tgk~i~tL~g-- 325 (1749)
..|++ ++.+..+--..+.|..|+..++... .+. ....+.++++.+++.++++ +.+ .|.++|..+++.......
T Consensus 23 p~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~ 98 (295)
T d2ghsa1 23 PTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELES 98 (295)
T ss_dssp EEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSST
T ss_pred CEEECCCCEEEEEECCCCEEEEEECCCCEEE-EEE-CCCCCEEEEEECCCCEEEE-EEC-CCEEEECCCCEEEEEEEEEC
T ss_conf 7598999999999878999999989989599-998-9998179899659988999-737-63895046451357866404
Q ss_pred --CCCCEEEEEECCCCC
Q ss_conf --788559999526999
Q 000270 326 --HTAAVTAIAFSPRPG 340 (1749)
Q Consensus 326 --Hs~~VtsIaFSPdg~ 340 (1749)
....++.+.+.|+|.
T Consensus 99 ~~~~~~~nd~~vd~~G~ 115 (295)
T d2ghsa1 99 DLPGNRSNDGRMHPSGA 115 (295)
T ss_dssp TCTTEEEEEEEECTTSC
T ss_pred CCCCCCCEEEEECCCCC
T ss_conf 78766101357979999
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.94 E-value=0.00037 Score=38.85 Aligned_cols=101 Identities=7% Similarity=0.119 Sum_probs=60.9
Q ss_pred EECCC--CCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEE-CCCC-----CEEEEECCCCC
Q ss_conf 99689--9679998389909999889995289960778855999952699962489963-2899-----09999768895
Q 000270 292 AVSSN--NALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS-SDDG-----TCRIWDARYSQ 363 (1749)
Q Consensus 292 afSPD--g~lLASGS~DGtIrIWDl~tgk~i~tL~gHs~~VtsIaFSPdg~~~~~LvSg-S~DG-----tIrIWDl~tg~ 363 (1749)
..+|| |+.+|..+ ++.|.+.++.+++.. .|..+.+.+...+|+|||+ .|+.. ..++ .|.+++..++.
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~---~iaf~~~~~~~~~~~~i~~~~~~~g~ 79 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGR---KIAIRVMRGSSLNTADLYFYNGENGE 79 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSS---EEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred CCCCCCCCCEEEEEE-CCCEEEEECCCCCEE-EEECCCCCCCCEEECCCCC---EEEEEEEECCCCCCEEEEEEEECCCC
T ss_conf 258887999999990-996899989999879-9766998526779878999---89999862898772289999825995
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEC
Q ss_conf 545251379997334877788888999997427999847998999941
Q 000270 364 FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS 411 (1749)
Q Consensus 364 ~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V~sIafSPDG~~LasGS 411 (1749)
........ .. ...........+|+|+|+.|+...
T Consensus 80 ~~~lt~~~---~~-----------~~~~~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 80 IKRITYFS---GK-----------STGRRMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp EEECCCCC---EE-----------EETTEECSEEEEECTTCCEEEEEC
T ss_pred EEEEEECC---CC-----------CCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 28864168---87-----------547644434310279887799997
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.90 E-value=0.00043 Score=38.39 Aligned_cols=111 Identities=14% Similarity=0.074 Sum_probs=67.8
Q ss_pred CCCEEEEEECCCEEEEEECCCCEEEEEECCCCC----------C-EEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEE
Q ss_conf 999999970874899997789808999716789----------8-59999968996799983899099998899952899
Q 000270 254 SGRYVITGSDDRLVKIWSMETAYCLASCRGHEG----------D-ITDLAVSSNNALVASASNDCIIRVWRLPDGLPISV 322 (1749)
Q Consensus 254 DG~~LATGS~DGtIkIWDl~Tg~~i~tL~gHs~----------~-VtsLafSPDg~lLASGS~DGtIrIWDl~tgk~i~t 322 (1749)
+| .|..++.++.|.-.|..+|+.+-++..... . -..++. .+..++.+..++.|.-.|..+|+.+..
T Consensus 66 ~g-~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~ 142 (560)
T d1kv9a2 66 DG-VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWS 142 (560)
T ss_dssp TT-EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CC-EEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCE--ECCEEEEEECCCEEEEEECCCCCEEEC
T ss_conf 99-999978999599996899987988779877644544322465357504--688499973898799997778957730
Q ss_pred ECCCCC-CEEEEEECC---CCCCCEEEEEEC------CCCCEEEEECCCCCCCCEEECC
Q ss_conf 607788-559999526---999624899632------8990999976889554525137
Q 000270 323 LRGHTA-AVTAIAFSP---RPGSVYQLLSSS------DDGTCRIWDARYSQFSPRIYIP 371 (1749)
Q Consensus 323 L~gHs~-~VtsIaFSP---dg~~~~~LvSgS------~DGtIrIWDl~tg~~i~~i~i~ 371 (1749)
...... ....+.-.| ++ .++.+. ..|.|.-+|+.+++.+.++...
T Consensus 143 ~~~~~~~~~~~~~~~p~v~~~----~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~ 197 (560)
T d1kv9a2 143 QQTTDPAKPYSITGAPRVVKG----KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTV 197 (560)
T ss_dssp EECSCTTSSCBCCSCCEEETT----EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred CCCCCCCCCEEEEEEEEEECC----CCCCCCCCEECCCCCEEEEEECCCCEEEEEEEEC
T ss_conf 576675540454320045068----5103653110013553899977886277664100
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.79 E-value=0.00064 Score=37.24 Aligned_cols=364 Identities=10% Similarity=-0.030 Sum_probs=162.4
Q ss_pred CCCEEEEEECCCEEEEEEC-CCCEEEEEECCCCC-----------CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE
Q ss_conf 9999999708748999977-89808999716789-----------85999996899679998389909999889995289
Q 000270 254 SGRYVITGSDDRLVKIWSM-ETAYCLASCRGHEG-----------DITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS 321 (1749)
Q Consensus 254 DG~~LATGS~DGtIkIWDl-~Tg~~i~tL~gHs~-----------~VtsLafSPDg~lLASGS~DGtIrIWDl~tgk~i~ 321 (1749)
+|...++.+.++.|...|. ++|+.+-++..... .-..+++. +..|+.++.|+.+.-.|..+|+.+.
T Consensus 62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w 139 (571)
T d2ad6a1 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEECCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE--CCEEEEEECCCCEEEEEHHHHHHHC
T ss_conf 99999942879959999489998668883588886544200247688862650--8869999179757821002112202
Q ss_pred EECCCC----CCEEEEEECCCCCCCEEEEEEC------CCCCEEEEECCCCCCCCEEECCCCCCCCCCC-----------
Q ss_conf 960778----8559999526999624899632------8990999976889554525137999733487-----------
Q 000270 322 VLRGHT----AAVTAIAFSPRPGSVYQLLSSS------DDGTCRIWDARYSQFSPRIYIPRPSDAVAGR----------- 380 (1749)
Q Consensus 322 tL~gHs----~~VtsIaFSPdg~~~~~LvSgS------~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~----------- 380 (1749)
...... ..++.--...++ .++.+. ..|.|.-+|+.+++.+.+.............
T Consensus 140 ~~~~~~~~~~~~~t~~p~v~~~----~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~ 215 (571)
T d2ad6a1 140 EVEVCDPKVGSTLTQAPFVAKD----TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYG 215 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEETT----EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred CCCCCCCCCCCCEEECCEEECC----EEEEEECCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 3444554432414536757588----588850234423467479998889858899704688644455554454433467
Q ss_pred ------CCCCCCCCCCCCCCE-EEEEECCCCCEEEEECCCC----------------CEEEEECCCCCCCCCCCCCCCEE
Q ss_conf ------778888899999742-7999847998999941898----------------09999389999989999985124
Q 000270 381 ------NMAPSSSAGPQSHQI-FCCAFNANGTVFVTGSSDT----------------LARVWNACKPNTDDSDQPNHEID 437 (1749)
Q Consensus 381 ------~~~~~~s~~~h~~~V-~sIafSPDG~~LasGS~DG----------------tIrIWDl~t~~~~~s~q~~~~i~ 437 (1749)
............+.+ ...++.+....+..+.... .+...|+.++ +.+-
T Consensus 216 ~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG---------~~~W 286 (571)
T d2ad6a1 216 QFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTG---------MAKW 286 (571)
T ss_dssp CSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTC---------CEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCH---------HHEE
T ss_conf 5555664567763143797520463305200834564034567522345663355653254412550---------1100
Q ss_pred EECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCEEEEEECCCCEEEEECCCCCCCCCCCC-----
Q ss_conf 3127899827999827872222333468778888755565557---99899994898099993688888853222-----
Q 000270 438 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFC---HDNIVTCSRDGSAIIWIPRSRRSHPKAAR----- 509 (1749)
Q Consensus 438 ~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~s~~~---~~~LvSgS~DGtIrIWDl~s~k~~~~~~~----- 509 (1749)
.+......+....... .+.+...... ...++..+.+|.+.+.|..+++.+.....
T Consensus 287 ~~q~~~~D~Wd~D~~~-----------------~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~ 349 (571)
T d2ad6a1 287 GYQKTPHDEWDFAGVN-----------------QMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVN 349 (571)
T ss_dssp EEESSTTCSSCCCCCC-----------------CCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred CCCCCCCCCCCCCCCC-----------------CCCEEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCCC
T ss_conf 1245676331465655-----------------64114551157665404632656449998568983765554677532
Q ss_pred CCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCC--EEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCC
Q ss_conf 1111245799999---99999999995112699998--019998579989999967982999989999558971289988
Q 000270 510 WTQAYHLKVPPPP---MPPQPPRGGPRQRILPTPRG--VNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTES 584 (1749)
Q Consensus 510 ~~~~~~l~v~~~~---~~~~~~~g~~i~~l~~h~~~--VtsIafSPDG~~LASgs~DGtI~IWDl~tgkli~tL~gHs~~ 584 (1749)
+..........+. ..................+. -...+++|+...+++...+....+....... ..+....
T Consensus 350 ~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~----~~~~~~~ 425 (571)
T d2ad6a1 350 VFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPY----RAGQFFV 425 (571)
T ss_dssp SEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCC----CTTSCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCC----CCCCCCC
T ss_conf 234556444632237643334566725777402224346652077888628976553443343002456----6775321
Q ss_pred EEEEEECCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEECC-------CCCEEEEECCCCEEEEEECCCCCCCCCC
Q ss_conf 3999994899948999947990999958999238998600026-------9999999908981999988998422354
Q 000270 585 TYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR-------DGASIILSDDVGQLYILNTGQGESQKDA 655 (1749)
Q Consensus 585 VtsIafSP~d~rlLvSas~DGtIrIWDi~tG~~l~tl~~~~fs-------DG~~LAsgs~DG~I~Iwdl~sGe~~k~~ 655 (1749)
...+...+ .+.. ......|.|.-+|+.+|+.+-........ .|.++++++.||.++.+|..+|+.+-..
T Consensus 426 ~~~~~~~~-~~~~-~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~ 501 (571)
T d2ad6a1 426 GATLAMYP-GPNG-PTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNF 501 (571)
T ss_dssp CEEEEEEE-CTTS-TTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCCEEECC-CCCC-CCCCCCCCEEEECCCCCCEEEECCCCCCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEE
T ss_conf 56303314-6677-6667756178853677846427678999875605966997999778996999999998687899
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.70 E-value=0.0009 Score=36.24 Aligned_cols=360 Identities=10% Similarity=0.047 Sum_probs=159.5
Q ss_pred CCCEEEEEECCCEEEEEECCCCEEEEEECCCC----------CCE-EEEEECCCCCEEEEEECCCEEEEEECCCCCEEEE
Q ss_conf 99999997087489999778980899971678----------985-9999968996799983899099998899952899
Q 000270 254 SGRYVITGSDDRLVKIWSMETAYCLASCRGHE----------GDI-TDLAVSSNNALVASASNDCIIRVWRLPDGLPISV 322 (1749)
Q Consensus 254 DG~~LATGS~DGtIkIWDl~Tg~~i~tL~gHs----------~~V-tsLafSPDg~lLASGS~DGtIrIWDl~tgk~i~t 322 (1749)
+| .|..++.++.|.-+|..+|+.+-++.... ..+ ..+++. ...++.++.|+.+.-.|..+|+.+..
T Consensus 77 ~g-~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~ 153 (573)
T d1kb0a2 77 DG-IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWH 153 (573)
T ss_dssp TT-EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CC-EEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE--CCCEEEEECCCCEEEECCCCCCCEEC
T ss_conf 99-9999789996999958999858786798876533334566566652387--88189973365406661624300101
Q ss_pred ECCCCCCE--EEEEEC---CCCCCCEEEEEEC------CCCCEEEEECCCCCCCCEEECCCCCCCCCCC---------CC
Q ss_conf 60778855--999952---6999624899632------8990999976889554525137999733487---------77
Q 000270 323 LRGHTAAV--TAIAFS---PRPGSVYQLLSSS------DDGTCRIWDARYSQFSPRIYIPRPSDAVAGR---------NM 382 (1749)
Q Consensus 323 L~gHs~~V--tsIaFS---Pdg~~~~~LvSgS------~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~---------~~ 382 (1749)
........ ..+.-. -.+ .+++++ ..|.|..+|..+++.+..+............ ..
T Consensus 154 ~~~~~~~~~~~~~~~~p~v~~~----~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~ 229 (573)
T d1kb0a2 154 QNTFEGQKGSLTITGAPRVFKG----KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (573)
T ss_dssp EETTTTCCSSCBCCSCCEEETT----EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred CCCCCCCCCEEEEECCEEEEEC----CEEEEECCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 4675687650786010279706----279921344554322189985688651025531045677777754322343235
Q ss_pred CCCC--CCCCCCCCE-EEEEECCCCCEEEEECCCC-------------------CEEEEECCCCCCCCCCCCCCCEEEEC
Q ss_conf 8888--899999742-7999847998999941898-------------------09999389999989999985124312
Q 000270 383 APSS--SAGPQSHQI-FCCAFNANGTVFVTGSSDT-------------------LARVWNACKPNTDDSDQPNHEIDVLS 440 (1749)
Q Consensus 383 ~~~~--s~~~h~~~V-~sIafSPDG~~LasGS~DG-------------------tIrIWDl~t~~~~~s~q~~~~i~~l~ 440 (1749)
.... ........+ ...++.+....+..+.... .|.-.|+.+++ ..-...
T Consensus 230 ~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~---------~~W~~q 300 (573)
T d1kb0a2 230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGK---------YKWHYQ 300 (573)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC---------EEEEEE
T ss_pred CCCCCEEECCCCCCCCCCCEECHHHCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHH---------EEECCC
T ss_conf 88775466379876235611854338155114777544410003456666664207996155000---------120244
Q ss_pred CCCCCE---------EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCC-
Q ss_conf 789982---------7999827872222333468778888755565557998999948980999936888888532221-
Q 000270 441 GHENDV---------NYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW- 510 (1749)
Q Consensus 441 gH~~~V---------~sIafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~- 510 (1749)
.....+ .......++ .....++.++.+|.+.++|..+++........
T Consensus 301 ~~~~d~wd~d~~~~~~l~~~~~~g-----------------------~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~ 357 (573)
T d1kb0a2 301 ETPGDNWDYTSTQPMILADIKIAG-----------------------KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVP 357 (573)
T ss_dssp SSTTCCSCCCCCSCCEEEEEEETT-----------------------EEEEEEEECCTTSEEEEEETTTCCEEEEEESSC
T ss_pred CCCCCCCCCCCCCEEEECCEECCC-----------------------CCEEEEEECCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf 367511200122014420200179-----------------------723620212555316886124344223112256
Q ss_pred ---CCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCC--C
Q ss_conf ---11124579999999999999995112699--9980199985799899999679829999899995589712899--8
Q 000270 511 ---TQAYHLKVPPPPMPPQPPRGGPRQRILPT--PRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHT--E 583 (1749)
Q Consensus 511 ---~~~~~l~v~~~~~~~~~~~g~~i~~l~~h--~~~VtsIafSPDG~~LASgs~DGtI~IWDl~tgkli~tL~gHs--~ 583 (1749)
...+.....................+.+. ...-..++++|+..+++....+....++.....+......+.. +
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g 437 (573)
T d1kb0a2 358 VNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSG 437 (573)
T ss_dssp CSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGG
T ss_pred CCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCC
T ss_conf 64344421122000000023466633786315677666554208876169854111542531155532355778753103
Q ss_pred -CEEEEEECCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEC------C-CCCEEEEECCCCEEEEEECCCCCCCCCC
Q ss_conf -8399999489994899994799099995899923899860002------6-9999999908981999988998422354
Q 000270 584 -STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF------R-DGASIILSDDVGQLYILNTGQGESQKDA 655 (1749)
Q Consensus 584 -~VtsIafSP~d~rlLvSas~DGtIrIWDi~tG~~l~tl~~~~f------s-DG~~LAsgs~DG~I~Iwdl~sGe~~k~~ 655 (1749)
......+ + ... ......-|.|.-||+.+|+.+-.+..... . .|.+|.+++.||.++.||..+|+.+-..
T Consensus 438 ~~~~~~~~-~-~~~-p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~ 514 (573)
T d1kb0a2 438 TGWNTAKF-F-NAE-PPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEA 514 (573)
T ss_dssp GTCCCCEE-E-CSS-CCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCCCCCCC-C-CCC-CCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEE
T ss_conf 55322233-4-568-87778736178757877866705168898877607986998999779991999999988685799
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.07 E-value=0.0048 Score=31.31 Aligned_cols=115 Identities=14% Similarity=0.100 Sum_probs=62.8
Q ss_pred EEEEECCCCCEEEEEECC-----------CEEEEEECCCCEEE--EE-ECCCCCCEEEEEECCCCCEEEEEECC-CEEEE
Q ss_conf 999997999999997087-----------48999977898089--99-71678985999996899679998389-90999
Q 000270 247 YCAIFDRSGRYVITGSDD-----------RLVKIWSMETAYCL--AS-CRGHEGDITDLAVSSNNALVASASND-CIIRV 311 (1749)
Q Consensus 247 tsIaFSpDG~~LATGS~D-----------GtIkIWDl~Tg~~i--~t-L~gHs~~VtsLafSPDg~lLASGS~D-GtIrI 311 (1749)
...+...+|+.++.|+.+ ..+.+||..++.-. .. ...+.......++.+++.+++.|+.+ ..+.+
T Consensus 23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~ 102 (387)
T d1k3ia3 23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 102 (387)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred EEEEEEECCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCEEE
T ss_conf 78999259999999840576667887760689999888896866677898744525689994688689863688862167
Q ss_pred EECCCCCEEEEECC-CCCCEEEEEECCCCCCCEEEEEECCC------CCEEEEECCCCCC
Q ss_conf 98899952899607-78855999952699962489963289------9099997688955
Q 000270 312 WRLPDGLPISVLRG-HTAAVTAIAFSPRPGSVYQLLSSSDD------GTCRIWDARYSQF 364 (1749)
Q Consensus 312 WDl~tgk~i~tL~g-Hs~~VtsIaFSPdg~~~~~LvSgS~D------GtIrIWDl~tg~~ 364 (1749)
||..+..-...-.. ....-.+.+..+++. .++.++.+ ..+.+||..+...
T Consensus 103 yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~---v~v~GG~~~~~~~~~~v~~yd~~~~~W 159 (387)
T d1k3ia3 103 YDSSSDSWIPGPDMQVARGYQSSATMSDGR---VFTIGGSWSGGVFEKNGEVYSPSSKTW 159 (387)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSC---EEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred ECCCCCCCCCCCCCCCCCCCCCEEEECCCC---EEEECCCCCCCCCCCEEEEECCCCCCE
T ss_conf 567557442156566421013035531782---665213663335432056634888955
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.00 E-value=0.0055 Score=30.91 Aligned_cols=73 Identities=11% Similarity=0.041 Sum_probs=44.9
Q ss_pred CCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCC------------CEEEEECCCCCCEEEEEECCCCCCEEEEEECCC
Q ss_conf 999801999857998999996-7982999989999------------558971289988399999489994899994799
Q 000270 539 TPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAADG------------SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDG 605 (1749)
Q Consensus 539 h~~~VtsIafSPDG~~LASgs-~DGtI~IWDl~tg------------kli~tL~gHs~~VtsIafSP~d~rlLvSas~DG 605 (1749)
.......+.++|||+++++++ .+.++.|+|+..- ..+.... ..-.-...+|.. .+....|.--|.
T Consensus 273 VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e-lglgPLht~fd~-~g~aytslfids 350 (459)
T d1fwxa2 273 IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDS 350 (459)
T ss_dssp EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTT
T ss_pred CCCCCCCEEECCCCCEEEEECCCCCCEEEEEEHHHHHHHCCCCCCCCCEEEECC-CCCCCCCCCCCC-CCEEEEEEECCC
T ss_conf 589877338899997899938858957999822535665046884521796113-576766203389-842999861231
Q ss_pred CEEEEECC
Q ss_conf 09999589
Q 000270 606 KTIVWDIW 613 (1749)
Q Consensus 606 tIrIWDi~ 613 (1749)
.|.-|++.
T Consensus 351 ~v~kw~~~ 358 (459)
T d1fwxa2 351 QVVKWNIE 358 (459)
T ss_dssp EEEEEEHH
T ss_pred EEEEEECC
T ss_conf 69997344
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.90 E-value=0.0067 Score=30.33 Aligned_cols=114 Identities=14% Similarity=0.224 Sum_probs=50.4
Q ss_pred EEEEEECCCCCEEEEEECCC-----------EEEEEECCCCCEE--EEE-CCCCCCEEEEEECCCCCCCEEEEEECCC-C
Q ss_conf 59999968996799983899-----------0999988999528--996-0778855999952699962489963289-9
Q 000270 288 ITDLAVSSNNALVASASNDC-----------IIRVWRLPDGLPI--SVL-RGHTAAVTAIAFSPRPGSVYQLLSSSDD-G 352 (1749)
Q Consensus 288 VtsLafSPDg~lLASGS~DG-----------tIrIWDl~tgk~i--~tL-~gHs~~VtsIaFSPdg~~~~~LvSgS~D-G 352 (1749)
+...+...++++++.|+.+. .+.+||..++.-. ..+ ..+.....+.++.+++. +++.|+.+ .
T Consensus 22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~---i~v~Gg~~~~ 98 (387)
T d1k3ia3 22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ---IVVTGGNDAK 98 (387)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC---EEEECSSSTT
T ss_pred CEEEEEEECCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCCEEEEEEECCCC---EEEEECCCCC
T ss_conf 1789992599999998405766678877606899998888968666778987445256899946886---8986368886
Q ss_pred CEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCC------CCEEEEECCC
Q ss_conf 0999976889554525137999733487778888899999742799984799899994189------8099993899
Q 000270 353 TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD------TLARVWNACK 423 (1749)
Q Consensus 353 tIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V~sIafSPDG~~LasGS~D------GtIrIWDl~t 423 (1749)
.+.+||..+......-.. .....-.+++..++|.+++.|+.. ..+.+||..+
T Consensus 99 ~~~~yd~~~~~w~~~~~~-------------------~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~ 156 (387)
T d1k3ia3 99 KTSLYDSSSDSWIPGPDM-------------------QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 156 (387)
T ss_dssp CEEEEEGGGTEEEECCCC-------------------SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred CEEEECCCCCCCCCCCCC-------------------CCCCCCCCEEEECCCCEEEECCCCCCCCCCCEEEEECCCC
T ss_conf 216756755744215656-------------------6421013035531782665213663335432056634888
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.65 E-value=0.01 Score=29.12 Aligned_cols=271 Identities=12% Similarity=0.090 Sum_probs=158.8
Q ss_pred CCCEEEEEECCCCEE-EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCC
Q ss_conf 874899997789808-9997167898599999689967999838990999988999528996077885599995269996
Q 000270 263 DDRLVKIWSMETAYC-LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS 341 (1749)
Q Consensus 263 ~DGtIkIWDl~Tg~~-i~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrIWDl~tgk~i~tL~gHs~~VtsIaFSPdg~~ 341 (1749)
....|.|.|+..... .+.-..- -+.-.+|..+.||.-+ ..++.++|+++.+.+..+. ....|.--.|..+.
T Consensus 43 ~~~~VvIidl~n~~~~~Rrpi~A----dsAIMhP~~~IiALra-g~~LQiFnletK~klks~~-~~e~VvfWkWis~~-- 114 (327)
T d1utca2 43 EQAQVVIIDMNDPSNPIRRPISA----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWISLN-- 114 (327)
T ss_dssp TEEEEEEEETTSTTSCEEEECCC----SEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE-CSSCCCEEEESSSS--
T ss_pred CCCEEEEEECCCCCCCEECCCCH----HHHHCCCCCCEEEEEC-CCEEEEEEHHHHHHHCEEE-CCCCCEEEEECCCC--
T ss_conf 98439999889987633144361----6653088875799962-8868998446822111587-68885799944798--
Q ss_pred CEEEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEC-------CCC
Q ss_conf 2489963289909999768895545251379997334877788888999997427999847998999941-------898
Q 000270 342 VYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS-------SDT 414 (1749)
Q Consensus 342 ~~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V~sIafSPDG~~LasGS-------~DG 414 (1749)
.|+..+. ..|.-|+++.... +.....+.. .-...+|..-..+++.+|++..+ -.|
T Consensus 115 --~L~lVT~-taVYHW~~~g~s~-P~k~fdR~~--------------~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G 176 (327)
T d1utca2 115 --TVALVTD-NAVYHWSMEGESQ-PVKMFDRHS--------------SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVG 176 (327)
T ss_dssp --EEEEECS-SEEEEEESSSSCC-CEEEEECCG--------------GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEE
T ss_pred --EEEEECC-CCEEEECCCCCCC-CHHHHHHCC--------------CCCCCEEEEEEECCCCCEEEEEEEECCCCCEEE
T ss_conf --8999918-8169973569998-526623210--------------124863899898999988999957137883058
Q ss_pred CEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE---ECCC
Q ss_conf 0999938999998999998512431278998279998278722223334687788887555655579989999---4898
Q 000270 415 LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC---SRDG 491 (1749)
Q Consensus 415 tIrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LvSg---S~DG 491 (1749)
.+.+|... .+..+.+.||......+........ ...|+.+ ...+
T Consensus 177 ~mQLYS~e----------r~~sQ~ieGhaa~F~~~~~~g~~~~-----------------------~~lf~fa~r~~~~~ 223 (327)
T d1utca2 177 AMQLYSVD----------RKVSQPIEGHAASFAQFKMEGNAEE-----------------------STLFCFAVRGQAGG 223 (327)
T ss_dssp EEEEEETT----------TTEEEEECCSEEEEEEECCTTCSSC-----------------------EEEEEEEEEETTEE
T ss_pred EEEEEEEC----------CCCCCCCCCEEEEEEEEECCCCCCC-----------------------CEEEEEEECCCCCC
T ss_conf 88899802----------2867523203465688870799887-----------------------30999998789874
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC
Q ss_conf 09999368888885322211112457999999999999999511269999801999857998999996798299998999
Q 000270 492 SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD 571 (1749)
Q Consensus 492 tIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIafSPDG~~LASgs~DGtI~IWDl~t 571 (1749)
++.+.++........ ........+-+++ .....-..++..|+.-..+..-+.-|.|++||+.+
T Consensus 224 kLhIiEig~~~~g~~-~f~kk~vdi~fpp----------------ea~~DFPvamqvs~kygiiyviTK~G~i~lyDleT 286 (327)
T d1utca2 224 KLHIIEVGTPPTGNQ-PFPKKAVDVFFPP----------------EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET 286 (327)
T ss_dssp EEEEEECSCCCTTCC-CCCCEEEECCCCT----------------TCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT
T ss_pred EEEEEECCCCCCCCC-CCCCEEEEEECCC----------------CCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCC
T ss_conf 799998688755788-8753268877796----------------34688477999643379999996675899997566
Q ss_pred CCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEE
Q ss_conf 955897128998839999948999489999479909999
Q 000270 572 GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVW 610 (1749)
Q Consensus 572 gkli~tL~gHs~~VtsIafSP~d~rlLvSas~DGtIrIW 610 (1749)
+.++..-+-....|...+-+...+.++ ....+|.|..-
T Consensus 287 gt~i~~nRIs~~~iF~~a~~~~~~Gi~-~VNr~GqVl~v 324 (327)
T d1utca2 287 GTCIYMNRISGETIFVTAPHEATAGII-GVNRKGQVLSV 324 (327)
T ss_dssp CCEEEEEECCSSCEEEEEEETTTTEEE-EEETTSEEEEE
T ss_pred CCEEEEEECCCCCEEEECCCCCCCEEE-EECCCCEEEEE
T ss_conf 628999404788448962678886089-98789769999
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.30 E-value=0.016 Score=27.72 Aligned_cols=112 Identities=9% Similarity=-0.084 Sum_probs=63.2
Q ss_pred CCEEEEEECCCEEEEEECCCCEEEEEECCCC--------CCE-EEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECC
Q ss_conf 9999997087489999778980899971678--------985-9999968996799983899099998899952899607
Q 000270 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHE--------GDI-TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRG 325 (1749)
Q Consensus 255 G~~LATGS~DGtIkIWDl~Tg~~i~tL~gHs--------~~V-tsLafSPDg~lLASGS~DGtIrIWDl~tgk~i~tL~g 325 (1749)
+..|.+++.++.|.-.|..+|+.+-++.... ..+ ..+++. +..++.++.++.+.-.|..+|+.+.....
T Consensus 68 ~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~t~~~~l~alda~tG~~~W~~~~ 145 (582)
T d1flga_ 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY--GDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE--TTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEE--CCCEEEECCCCEEEEECCCCCCEEEEECC
T ss_conf 9999996899959999689998688876889876553334446774586--78158864887499811666630211102
Q ss_pred --CC-C---CEEEEEECC--CCCCCEEEEEE------CCCCCEEEEECCCCCCCCEEEC
Q ss_conf --78-8---559999526--99962489963------2899099997688955452513
Q 000270 326 --HT-A---AVTAIAFSP--RPGSVYQLLSS------SDDGTCRIWDARYSQFSPRIYI 370 (1749)
Q Consensus 326 --Hs-~---~VtsIaFSP--dg~~~~~LvSg------S~DGtIrIWDl~tg~~i~~i~i 370 (1749)
+. . .-.-+.+.+ ... ..++.+ +..+.|.-+|..+++.+.++..
T Consensus 146 ~~~~~~~~~~~~p~~~~~~~~~~--~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~ 202 (582)
T d1flga_ 146 ADHGAGYTMTGAPTIVKDGKTGK--VLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPF 202 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCC--EEEEECCBCGGGCCBCEEEEECTTTCCEEEEEES
T ss_pred CCCCCCCEEECCCEEECCCCEEE--EEEEECCCCCCCCCCCCEEEECCCCCCEEEEEEC
T ss_conf 47776612403866704884757--9999076654346546348723888867898712
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.19 E-value=0.018 Score=27.35 Aligned_cols=97 Identities=14% Similarity=0.029 Sum_probs=51.8
Q ss_pred CCCCEEEEEECCCCCEEEEE-----ECCCEEEEEECCCCEEEEE-ECCCCCCEEEEEECCCCCEEEEEECC---------
Q ss_conf 89877999997999999997-----0874899997789808999-71678985999996899679998389---------
Q 000270 242 HRNAVYCAIFDRSGRYVITG-----SDDRLVKIWSMETAYCLAS-CRGHEGDITDLAVSSNNALVASASND--------- 306 (1749)
Q Consensus 242 H~~~VtsIaFSpDG~~LATG-----S~DGtIkIWDl~Tg~~i~t-L~gHs~~VtsLafSPDg~lLASGS~D--------- 306 (1749)
+.-.+..+++||+++++|.+ ++-..|+++|+.+++.+.. +.. .....++|++|++.|+....+
T Consensus 123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~ 200 (430)
T d1qfma1 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (430)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEECCEEECCCCCEEEEEECCCCCCHHEEEEECCCCCEECCCCCCC--CCCCCEEECCCCCEEEEEEECCCCCCCCCC
T ss_conf 441334258537898799995566672104677416764031442224--323641785799899999762666765443
Q ss_pred -------CEEEEEECCCCC--EEEEECCC--CCCEEEEEECCCCC
Q ss_conf -------909999889995--28996077--88559999526999
Q 000270 307 -------CIIRVWRLPDGL--PISVLRGH--TAAVTAIAFSPRPG 340 (1749)
Q Consensus 307 -------GtIrIWDl~tgk--~i~tL~gH--s~~VtsIaFSPdg~ 340 (1749)
..|..|.+.+.. .+..+... ...+..+..+.+++
T Consensus 201 ~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~ 245 (430)
T d1qfma1 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR 245 (430)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC
T ss_pred CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
T ss_conf 334578633899988988653100223235772577530268762
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=95.88 E-value=0.025 Score=26.41 Aligned_cols=64 Identities=13% Similarity=0.033 Sum_probs=44.6
Q ss_pred CCEEEEEECCCCCEEEEECCCCCCEE-EEEECCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEECC
Q ss_conf 98299998999955897128998839-99994899948999947990999958999238998600026
Q 000270 561 DCRICVWNAADGSLVHSLTGHTESTY-VLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR 627 (1749)
Q Consensus 561 DGtI~IWDl~tgkli~tL~gHs~~Vt-sIafSP~d~rlLvSas~DGtIrIWDi~tG~~l~tl~~~~fs 627 (1749)
.|.|.-+|+.+|+.+.....-..... .|.. .+.+++.++.||.++.+|..+|+.+-.+..+...
T Consensus 443 ~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~T---agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~ 507 (571)
T d2ad6a1 443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYT---KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGG 507 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCCSBCEEE---TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred CCCEEEECCCCCCEEEECCCCCCCCCCEEEE---CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCC
T ss_conf 5617885367784642767899987560596---6997999778996999999998687899899996
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=95.65 E-value=0.031 Score=25.78 Aligned_cols=156 Identities=9% Similarity=0.022 Sum_probs=84.7
Q ss_pred CCEEEEEECCCEEEEEECCCCEEEEEECCCC----CCEEEEEECCCCCEEEEEEC------CCEEEEEECCCCCEEEEEC
Q ss_conf 9999997087489999778980899971678----98599999689967999838------9909999889995289960
Q 000270 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHE----GDITDLAVSSNNALVASASN------DCIIRVWRLPDGLPISVLR 324 (1749)
Q Consensus 255 G~~LATGS~DGtIkIWDl~Tg~~i~tL~gHs----~~VtsLafSPDg~lLASGS~------DGtIrIWDl~tgk~i~tL~ 324 (1749)
+.+|+.++.|+.|.-.|..+|+.+..+.... ..++.--.--++ .++.+.. .|.|+-+|+.+|+.+..+.
T Consensus 121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~-~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~ 199 (596)
T d1w6sa_ 121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (596)
T ss_dssp CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEEECCCCEEEECCCCCCEECCCCCCCCCCCCCCCCCCCEECC-EEEEEECCCCCCCCCCEEEEECCCCCEEEEEE
T ss_conf 62999980798768543656841023101465556422458817777-58993023444335732898878885778865
Q ss_pred CCC-------------------------------------CCE-EEEEECCCCCCCEEEEEECC----------------
Q ss_conf 778-------------------------------------855-99995269996248996328----------------
Q 000270 325 GHT-------------------------------------AAV-TAIAFSPRPGSVYQLLSSSD---------------- 350 (1749)
Q Consensus 325 gHs-------------------------------------~~V-tsIaFSPdg~~~~~LvSgS~---------------- 350 (1749)
... ..+ ..+++.+... ++..+..
T Consensus 200 t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~---lvy~~tg~~~p~~~~~r~g~n~y 276 (596)
T d1w6sa_ 200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTN---LIYFGTGNPAPWNETMRPGDNKW 276 (596)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTT---EEEEECCCCSCSCGGGSCSCCTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCC---EEECCCCCCCCCCCCCCCCCCCC
T ss_conf 358865545554454333334545546666788733347874225622156777---25405645556520235653334
Q ss_pred CCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEE-ECCCC---CEEEEECCCCCEEEEECCCCC
Q ss_conf 9909999768895545251379997334877788888999997427999-84799---899994189809999389999
Q 000270 351 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCA-FNANG---TVFVTGSSDTLARVWNACKPN 425 (1749)
Q Consensus 351 DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V~sIa-fSPDG---~~LasGS~DGtIrIWDl~t~~ 425 (1749)
...|...|+.+++....+........- .. ....+..+. ...+| ..++....+|.+.++|..+++
T Consensus 277 s~sivAlD~~TG~~~W~~Q~~~~D~Wd----------~d-~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~ 344 (596)
T d1w6sa_ 277 TMTIFGRDADTGEAKFGYQKTPHDEWD----------YA-GVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA 344 (596)
T ss_dssp SSEEEEEETTTCCEEEEEESSTTCSSC----------CC-CCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCC----------CC-CCCCEEEEECCCCCCCCCCCEECCCCCCCEEEECCCCCC
T ss_conf 443010263550010012403025657----------76-542106531033335553210014654322540677882
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.51 E-value=0.035 Score=25.46 Aligned_cols=28 Identities=11% Similarity=0.129 Sum_probs=13.4
Q ss_pred EEEEECCCCCCEEEEEECCCCEEEEECC
Q ss_conf 9999948999489999479909999589
Q 000270 586 YVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1749)
Q Consensus 586 tsIafSP~d~rlLvSas~DGtIrIWDi~ 613 (1749)
..+.++|++..+++++..+.++.|.|+.
T Consensus 278 HGV~vSPDGKyi~VaGKLs~tVSViD~~ 305 (459)
T d1fwxa2 278 HGCNMAPDKKHLCVAGKLSPTVTVLDVT 305 (459)
T ss_dssp CCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred CCEEECCCCCEEEEECCCCCCEEEEEEH
T ss_conf 7338899997899938858957999822
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.84 E-value=0.055 Score=24.15 Aligned_cols=104 Identities=7% Similarity=0.043 Sum_probs=60.7
Q ss_pred CEEEEEECCCCCEEEEEE-CC----CEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEECC-----------
Q ss_conf 859999968996799983-89----90999988999528996077885599995269996248996328-----------
Q 000270 287 DITDLAVSSNNALVASAS-ND----CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD----------- 350 (1749)
Q Consensus 287 ~VtsLafSPDg~lLASGS-~D----GtIrIWDl~tgk~i~tL~gHs~~VtsIaFSPdg~~~~~LvSgS~----------- 350 (1749)
.+..+++||+++++|.+- .+ ..|++.|+.+++.+...- .......++|++++. .|+....
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~---~~~Y~~~~~~~~~~~~~~ 201 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGK---GMFYNAYPQQDGKSDGTE 201 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSS---EEEEEECCCCSSCCSSSC
T ss_pred EECCEEECCCCCEEEEEECCCCCCHHEEEEECCCCCEECCCCC-CCCCCCCEEECCCCC---EEEEEEECCCCCCCCCCC
T ss_conf 3342585378987999955666721046774167640314422-243236417857998---999997626667654433
Q ss_pred -----CCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEE
Q ss_conf -----990999976889554525137999733487778888899999742799984799899994
Q 000270 351 -----DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG 410 (1749)
Q Consensus 351 -----DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V~sIafSPDG~~LasG 410 (1749)
...|..|.+.+......+.... ......+..+..+.++++++..
T Consensus 202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e----------------~d~~~~~~~~~~s~d~~~l~i~ 250 (430)
T d1qfma1 202 TSTNLHQKLYYHVLGTDQSEDILCAEF----------------PDEPKWMGGAELSDDGRYVLLS 250 (430)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECC----------------TTCTTCEEEEEECTTSCEEEEE
T ss_pred CCCCCCCEEEEEECCCCCCCCCCCCCC----------------CCCCCEEEEEECCCCCCEEEEE
T ss_conf 345786338999889886531002232----------------3577257753026876245687
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.22 E-value=0.075 Score=23.22 Aligned_cols=19 Identities=5% Similarity=0.011 Sum_probs=7.9
Q ss_pred CCCEEEEEECCCCCEEEEE
Q ss_conf 7982999989999558971
Q 000270 560 MDCRICVWNAADGSLVHSL 578 (1749)
Q Consensus 560 ~DGtI~IWDl~tgkli~tL 578 (1749)
..+.|...|..+++.+.++
T Consensus 227 ~~~~I~~~~~~~g~~~~~~ 245 (263)
T d1npea_ 227 KTNSVIAMDLAISKEMDTF 245 (263)
T ss_dssp TTTEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEECCCCCCCEEE
T ss_conf 9997999989899510698
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.36 E-value=0.11 Score=22.21 Aligned_cols=78 Identities=10% Similarity=0.009 Sum_probs=40.4
Q ss_pred CEEEEEECCCCCEEEEE-ECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCCCCEEEE
Q ss_conf 80199985799899999-67982999989999558971289988399999489994899994799099995899923899
Q 000270 542 GVNMIVWSLDNRFVLAA-IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRI 620 (1749)
Q Consensus 542 ~VtsIafSPDG~~LASg-s~DGtI~IWDl~tgkli~tL~gHs~~VtsIafSP~d~rlLvSas~DGtIrIWDi~tG~~l~t 620 (1749)
..+.+++.+.++.|..+ ...+.|...++........+.+-.. ..+|++. ++.+..+-...+.|...+..+|+.+.+
T Consensus 168 ~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~-P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~ 244 (263)
T d1npea_ 168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQY-PFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDT 244 (263)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCS-EEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCEEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEECCCCC-CEEEEEE--CCEEEEEECCCCEEEEEECCCCCCCEE
T ss_conf 5530799504758999928999999999999976999889998-6899999--999999999999799998989951069
Q ss_pred EE
Q ss_conf 86
Q 000270 621 YE 622 (1749)
Q Consensus 621 l~ 622 (1749)
+.
T Consensus 245 ~~ 246 (263)
T d1npea_ 245 FH 246 (263)
T ss_dssp EC
T ss_pred EC
T ss_conf 89
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=92.46 E-value=0.14 Score=21.37 Aligned_cols=61 Identities=11% Similarity=0.175 Sum_probs=44.4
Q ss_pred CEEEEEECCCCCEEEEECCCCCCE-EEEEECCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEE
Q ss_conf 829999899995589712899883-9999948999489999479909999589992389986000
Q 000270 562 CRICVWNAADGSLVHSLTGHTEST-YVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISR 625 (1749)
Q Consensus 562 GtI~IWDl~tgkli~tL~gHs~~V-tsIafSP~d~rlLvSas~DGtIrIWDi~tG~~l~tl~~~~ 625 (1749)
|.|.-||+.+|+.+.......... -.++. .+.+++.++.||.++.+|..+|+.+-.+....
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lst---agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~ 518 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTT---AGNVVFQGTADGRLVAYHAATGEKLWEAPTGT 518 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEE---TTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CCEEEECCCCCCEEEEECCCCCCCCCEEEE---CCCEEEEECCCCEEEEEECCCCCEEEEEECCC
T ss_conf 617875787786670516889887760798---69989997799919999999886857998989
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.12 E-value=0.24 Score=19.82 Aligned_cols=27 Identities=15% Similarity=-0.093 Sum_probs=10.1
Q ss_pred EEEEEECCCCCEEEEE-ECCCEEEEEEC
Q ss_conf 0199985799899999-67982999989
Q 000270 543 VNMIVWSLDNRFVLAA-IMDCRICVWNA 569 (1749)
Q Consensus 543 VtsIafSPDG~~LASg-s~DGtI~IWDl 569 (1749)
.+.+++.+.+..|..+ ...+.|...++
T Consensus 166 p~gl~iD~~~~~lYw~d~~~~~I~~~~~ 193 (266)
T d1ijqa1 166 PNGITLDLLSGRLYWVDSKLHSISSIDV 193 (266)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEEEEEECCCCEEEEECCCCCEEEEEEC
T ss_conf 1699861335699995289679999989
|
| >d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: Tudor/PWWP/MBT family: Tudor domain domain: Survival motor neuron protein 1, smn species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.38 E-value=0.31 Score=18.99 Aligned_cols=56 Identities=23% Similarity=0.460 Sum_probs=40.4
Q ss_pred CCCCCCCCEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 796779715985137889999659999988158999999999744599987999954335767101598
Q 000270 1556 RNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFDSD 1624 (1749)
Q Consensus 1556 ~~w~~G~rf~m~fe~e~~~~~~~~~G~I~~~~~~~p~~P~S~W~~l~V~Wd~~~~~~~rvSPWEie~~~ 1624 (1749)
+.|++|+.|...|.. ++.||.++|.++.+.. ..+.|.+..- +..+.|+.=+|.|+.
T Consensus 2 ~~wkvG~~C~A~~s~----Dg~wYRA~I~~v~~~~--------~~~~V~fvDY-Gn~e~V~~~~l~~~~ 57 (59)
T d1mhna_ 2 QQWKVGDKCSAIWSE----DGCIYPATIASIDFKR--------ETCVVVYTGY-GNREEQNLSDLLSPI 57 (59)
T ss_dssp CCCCTTCEEEEECTT----TSCEEEEEEEEEETTT--------TEEEEEETTT-TEEEEEEGGGCBCTT
T ss_pred CCCCCCCEEEEEECC----CCCEEEEEEEEECCCC--------CEEEEEEEEC-CCEEEEEHHHCCCCC
T ss_conf 768869999999887----8989899999974889--------9999999808-998998899976988
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.07 E-value=0.38 Score=18.48 Aligned_cols=207 Identities=14% Similarity=0.206 Sum_probs=113.2
Q ss_pred EEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC-CEEEEECCC
Q ss_conf 9999799999999708748999977898089997167898599999689967999838990999988999-528996077
Q 000270 248 CAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG-LPISVLRGH 326 (1749)
Q Consensus 248 sIaFSpDG~~LATGS~DGtIkIWDl~Tg~~i~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrIWDl~tg-k~i~tL~gH 326 (1749)
+...+|..+.||.-+ ..++.|+|+++...++.+.- ...|.--.|-.+. .|+..+. ..|+-|++... .+...+.-|
T Consensus 67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~L~lVT~-taVYHW~~~g~s~P~k~fdR~ 142 (327)
T d1utca2 67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVTD-NAVYHWSMEGESQPVKMFDRH 142 (327)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSSS-EEEEECS-SEEEEEESSSSCCCEEEEECC
T ss_pred HHHCCCCCCEEEEEC-CCEEEEEEHHHHHHHCEEEC-CCCCEEEEECCCC-EEEEECC-CCEEEECCCCCCCCHHHHHHC
T ss_conf 653088875799962-88689984468221115876-8885799944798-8999918-816997356999852662321
Q ss_pred C----CCEEEEEECCCCCCCEEEEE-E------CCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 8----85599995269996248996-3------28990999976889554525137999733487778888899999742
Q 000270 327 T----AAVTAIAFSPRPGSVYQLLS-S------SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395 (1749)
Q Consensus 327 s----~~VtsIaFSPdg~~~~~LvS-g------S~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V 395 (1749)
. ..|..-..+++.+ +++. | .-.|.+.+|..+.... +.+. ... +...........+...+
T Consensus 143 ~~L~~~QIInY~~d~~~k---W~~l~GI~~~~~~i~G~mQLYS~er~~s-Q~ie--Gha----a~F~~~~~~g~~~~~~l 212 (327)
T d1utca2 143 SSLAGCQIINYRTDAKQK---WLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIE--GHA----ASFAQFKMEGNAEESTL 212 (327)
T ss_dssp GGGTTCEEEEEEECTTSC---EEEEEEEEEETTEEEEEEEEEETTTTEE-EEEC--CSE----EEEEEECCTTCSSCEEE
T ss_pred CCCCCCEEEEEEECCCCC---EEEEEEEECCCCCEEEEEEEEEECCCCC-CCCC--CEE----EEEEEEECCCCCCCCEE
T ss_conf 012486389989899998---8999957137883058888998022867-5232--034----65688870799887309
Q ss_pred EEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEECC---CCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7999847998999941898099993899999899999851243127---8998279998278722223334687788887
Q 000270 396 FCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG---HENDVNYVQFSGCAVASRFSLADSSKEDSTP 472 (1749)
Q Consensus 396 ~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l~g---H~~~V~sIafSpdg~as~~s~~~~~~~~~~~ 472 (1749)
.|++.- +...+.+++.++..+......-+.+....+.. ..+-..++..+..-
T Consensus 213 f~fa~r--------~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~ky----------------- 267 (327)
T d1utca2 213 FCFAVR--------GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH----------------- 267 (327)
T ss_dssp EEEEEE--------ETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTT-----------------
T ss_pred EEEEEC--------CCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCC-----------------
T ss_conf 999987--------8987479999868875578887532688777963468847799964337-----------------
Q ss_pred CCCCCCCCCCEEEEEECCCCEEEEECCCCC
Q ss_conf 555655579989999489809999368888
Q 000270 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 502 (1749)
Q Consensus 473 ~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k 502 (1749)
..+...+.-|.+.+||+.++.
T Consensus 268 ---------giiyviTK~G~i~lyDleTgt 288 (327)
T d1utca2 268 ---------DVVFLITKYGYIHLYDLETGT 288 (327)
T ss_dssp ---------TEEEEEETTSEEEEEETTTCC
T ss_pred ---------CEEEEEECCCEEEEEECCCCC
T ss_conf ---------999999667589999756662
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=86.86 E-value=0.38 Score=18.40 Aligned_cols=69 Identities=12% Similarity=0.065 Sum_probs=44.5
Q ss_pred CCEEEEEECCCEEEEEECCCCEEEEEECCCCC-CEEEEEECC---CCCEEEEEEC------CCEEEEEECCCCCEEEEEC
Q ss_conf 99999970874899997789808999716789-859999968---9967999838------9909999889995289960
Q 000270 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHEG-DITDLAVSS---NNALVASASN------DCIIRVWRLPDGLPISVLR 324 (1749)
Q Consensus 255 G~~LATGS~DGtIkIWDl~Tg~~i~tL~gHs~-~VtsLafSP---Dg~lLASGS~------DGtIrIWDl~tgk~i~tL~ 324 (1749)
+..++.+..++.|.-.|..+|+.+..+..... .-..+.-.| ++ .++.+.. .|.|.-+|..+|+.+..+.
T Consensus 117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 195 (560)
T d1kv9a2 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (560)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEECCCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEEEECC-CCCCCCCCEECCCCCEEEEEECCCCEEEEEEE
T ss_conf 88499973898799997778957730576675540454320045068-51036531100135538999778862776641
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