Citrus Sinensis ID: 000305
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1696 | 2.2.26 [Sep-21-2011] | |||||||
| Q4KKX4 | 2494 | Nuclear receptor corepres | yes | no | 0.146 | 0.099 | 0.266 | 6e-17 | |
| O75376 | 2440 | Nuclear receptor corepres | no | no | 0.147 | 0.102 | 0.235 | 9e-16 | |
| Q60974 | 2453 | Nuclear receptor corepres | yes | no | 0.147 | 0.101 | 0.235 | 1e-15 | |
| Q8QG78 | 2498 | Nuclear receptor corepres | N/A | no | 0.146 | 0.099 | 0.262 | 5e-15 | |
| Q9Y618 | 2525 | Nuclear receptor corepres | no | no | 0.147 | 0.099 | 0.233 | 3e-14 | |
| Q9WU42 | 2472 | Nuclear receptor corepres | no | no | 0.147 | 0.101 | 0.237 | 4e-14 | |
| Q55DP9 | 1448 | Myb-like protein P OS=Dic | yes | no | 0.064 | 0.075 | 0.336 | 2e-11 | |
| Q6NRZ0 | 503 | REST corepressor 2 OS=Xen | N/A | no | 0.182 | 0.614 | 0.219 | 7e-06 | |
| Q10369 | 661 | Uncharacterized protein C | yes | no | 0.110 | 0.282 | 0.256 | 8e-06 | |
| Q8BXJ2 | 1205 | Transcriptional-regulatin | no | no | 0.030 | 0.043 | 0.436 | 3e-05 |
| >sp|Q4KKX4|NCOR1_XENTR Nuclear receptor corepressor 1 OS=Xenopus tropicalis GN=ncor1 PE=2 SV=1 | Back alignment and function desciption |
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Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 129/274 (47%), Gaps = 26/274 (9%)
Query: 531 LCDMILGANKELANEASEVLKKLLPRDHSNIDISGVANVFCCQNDSLVKEKFAKKKQLLR 590
+ +I N++ A EA ++L+ L P+ + + + ++++ + +KK +L
Sbjct: 227 IVQIIYDENRKKAEEAHKILEGLGPK--VELPLYNQPSDTKVYHENIKTNQVMRKKLILF 284
Query: 591 FKERVLTLKFKAFQHLWREDLRLLSIRKYRAR----SQKKCELSLRTTYTGYQKHRSSIR 646
FK R K + R D + + K R ++K + S Y Y+K IR
Sbjct: 285 FKRRNHARKLREQNICQRYDQLMEAWEKKVDRIENNPRRKAKESKTREY--YEKQFPEIR 342
Query: 647 ---------SRFSSPAGNLSLV------QTAEVINFTSKLLSDSQIKTYRNSLKMPALIL 691
R LS + +E+I+ S+ ++ K R +P ++
Sbjct: 343 KQREQQERFQRVGQRGAGLSATIARSEHEISEIIDGLSE--QENNEKQMRQLSVIPPMMF 400
Query: 692 DKKEKMSSRFISSNGLVEDPCAVEKERAMINPWTSEEREIFVDKLATFGKDFRKIASFLN 751
D E+ +FI+ NGL+EDP V K+R +N WT E+EIF +K K+F IAS+L
Sbjct: 401 DA-EQRRVKFINMNGLMEDPMKVYKDRQFMNVWTDHEKEIFKEKFVQHPKNFGLIASYLE 459
Query: 752 YKTTADCVEFYYKNHKSDCFEKLKKKHDFSKQGK 785
KT +DCV +YY K++ F+ L +++ ++G+
Sbjct: 460 RKTVSDCVLYYYLTKKNENFKALVRRNYPKRRGR 493
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Mediates transcriptional repression by certain nuclear receptors. Participates in complexes which promote histone deacetylation and the formation of repressive chromatin structures which may impede access by the basal transcription machinery. Xenopus tropicalis (taxid: 8364) |
| >sp|O75376|NCOR1_HUMAN Nuclear receptor corepressor 1 OS=Homo sapiens GN=NCOR1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q60974|NCOR1_MOUSE Nuclear receptor corepressor 1 OS=Mus musculus GN=Ncor1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8QG78|NCOR1_XENLA Nuclear receptor corepressor 1 OS=Xenopus laevis GN=ncor1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9Y618|NCOR2_HUMAN Nuclear receptor corepressor 2 OS=Homo sapiens GN=NCOR2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9WU42|NCOR2_MOUSE Nuclear receptor corepressor 2 OS=Mus musculus GN=Ncor2 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q55DP9|MYBP_DICDI Myb-like protein P OS=Dictyostelium discoideum GN=mybP PE=3 SV=1 | Back alignment and function description |
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| >sp|Q6NRZ0|RCOR2_XENLA REST corepressor 2 OS=Xenopus laevis GN=rcor2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q10369|YDBJ_SCHPO Uncharacterized protein C22E12.19 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC22E12.19 PE=4 SV=2 | Back alignment and function description |
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| >sp|Q8BXJ2|TREF1_MOUSE Transcriptional-regulating factor 1 OS=Mus musculus GN=Trerf1 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1696 | ||||||
| 359486527 | 1940 | PREDICTED: uncharacterized protein LOC10 | 0.951 | 0.831 | 0.579 | 0.0 | |
| 147771380 | 1971 | hypothetical protein VITISV_026902 [Viti | 0.955 | 0.821 | 0.573 | 0.0 | |
| 224112993 | 1659 | predicted protein [Populus trichocarpa] | 0.940 | 0.961 | 0.572 | 0.0 | |
| 224097993 | 1666 | predicted protein [Populus trichocarpa] | 0.883 | 0.899 | 0.553 | 0.0 | |
| 357443347 | 1682 | Nuclear receptor corepressor [Medicago t | 0.918 | 0.925 | 0.480 | 0.0 | |
| 358349062 | 1655 | Nuclear receptor corepressor [Medicago t | 0.902 | 0.925 | 0.473 | 0.0 | |
| 356533979 | 1372 | PREDICTED: uncharacterized protein LOC10 | 0.726 | 0.897 | 0.528 | 0.0 | |
| 449449471 | 1649 | PREDICTED: uncharacterized protein LOC10 | 0.899 | 0.925 | 0.433 | 0.0 | |
| 449487289 | 1620 | PREDICTED: uncharacterized LOC101222167 | 0.884 | 0.925 | 0.429 | 0.0 | |
| 255588075 | 1651 | conserved hypothetical protein [Ricinus | 0.574 | 0.589 | 0.529 | 0.0 |
| >gi|359486527|ref|XP_002274774.2| PREDICTED: uncharacterized protein LOC100240985 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1696 bits (4393), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1001/1726 (57%), Positives = 1222/1726 (70%), Gaps = 112/1726 (6%)
Query: 1 MPEDESTRISVSRGDG--KYGRNSRENRSSFCQSDCKGYAWDTSNGYATTPGRLHEVNCN 58
M EDE++R +RGDG KY RN+RE R SF Q D KG+ +T N GR +N +
Sbjct: 210 MVEDENSRPFTTRGDGNGKYSRNNREIRGSFSQKDWKGHPLETGNASPNMSGRSLAIN-D 268
Query: 59 QRSVDDMLTYPSHPQSDFVT-WDHLQLKDQHDNKIGSVNGLATGQRCESENSL---DWKK 114
QRSVDDML + SDFV WD LQLKDQHD K+GSVNGL TGQR E ENSL DWK
Sbjct: 269 QRSVDDMLIH-----SDFVNGWDQLQLKDQHD-KMGSVNGLGTGQRAERENSLSSIDWKP 322
Query: 115 IKWTRSGSLSSRGSGLSHSSSSKSMGGVDSSEGKTDFQVKNATSIQSPSGDAATYATSGV 174
+KWTRSGSLSSRGSG SHSSSSKSMG VDS+E + D Q +N T +QSPSGDA S
Sbjct: 323 LKWTRSGSLSSRGSGFSHSSSSKSMG-VDSNEARGDLQPRNVTPVQSPSGDAVACVASTA 381
Query: 175 LFEETTSRKKPRLGWGEGLAKYEKKKVEVPDVSGNKDGVFNFSSNAEPLQSLSSNLAEKS 234
EET+SRKKPRLGWGEGLAKYE+KKVE PD S NK+G+ +SN E SL+SNLA+KS
Sbjct: 382 PSEETSSRKKPRLGWGEGLAKYERKKVEGPDESVNKNGIVFCTSNGESTHSLNSNLADKS 441
Query: 235 PRVMGFSDCASPATPSSVACSSSPGVEEKAFGKAVSVDNDVSNLCGSPSIVSQNHREGFL 294
PRVMGFSDCASPATPSSVACSSSPG+EEK+F KA +VDND S L GSP VS NH +GF
Sbjct: 442 PRVMGFSDCASPATPSSVACSSSPGMEEKSFSKAGNVDNDTSTLSGSPGPVSLNHLDGFS 501
Query: 295 FNLEKLDTNSIGNLGSSLVELLQYDDPSSVDSSFVRSTAMNKLLVWKGDILKTLEMTETE 354
F LE L+ N I NLG S +ELLQ DDPSSVDS+F+RSTAM+KLL+WKGDI K+LEMTE+E
Sbjct: 502 FILESLEPNQIANLGFSPIELLQSDDPSSVDSNFMRSTAMSKLLIWKGDISKSLEMTESE 561
Query: 355 IDSLENELKSLKSVLGSTSPCPVTSISLSVEDNANPFNKQGTVSNSIIRPAPLQI-DCGD 413
ID+LENELKSLKS GS+ PCP S S VE A P +QG SN I+RPAPLQI GD
Sbjct: 562 IDTLENELKSLKSGSGSSCPCPAASSSFPVEGKAKPCEEQGAASNLILRPAPLQIVPPGD 621
Query: 414 LSVENMPDCSHGLEEVHGNSKDEDIDSPGTATSKFVEPSSFVKPVSPSNMLKNGESFGVL 473
+ + S +E+ H KDEDIDSPGTATSKFVEP VK SPS+M+ GE G L
Sbjct: 622 MMTDKTLLGSDAMEDAHAEVKDEDIDSPGTATSKFVEPPCLVKTASPSDMVIQGECSGNL 681
Query: 474 DTVHSSNTEVKCTMPGSSFGEVVAGASTCG-DGDMILESKNDALISSNFSAYADGENMLC 532
S+N EV+ + G + E G ST G D +++ESK A +S + D E+ +
Sbjct: 682 KITRSTNMEVELLVSGPNVEET--GISTSGGDSRLLVESKTGARVSGDMGVLDDEEDKIY 739
Query: 533 DMILGANKELANEASEVLKKLLPRDHSNIDISGVANVFCCQNDSLVKEKFAKKKQLLRFK 592
++IL +NK+ AN ASEV KLLP++ DI G AN C QNDSL+K+KFA +K+ LRFK
Sbjct: 740 NLILASNKDCANRASEVFNKLLPQNQCQNDILGAANFACRQNDSLIKQKFAMRKRFLRFK 799
Query: 593 ERVLTLKFKAFQHLWREDLRLLSIRKYRARSQKKCELSLRTTYTGYQKHRSSIRSRFSSP 652
E+V+TLKF+ QH+W+ED+RLLSIRKYRA+SQKK ELSLRT++ GYQKHRSSIRSRFSSP
Sbjct: 800 EKVITLKFRVSQHVWKEDMRLLSIRKYRAKSQKKFELSLRTSHCGYQKHRSSIRSRFSSP 859
Query: 653 AGNLSLVQTAEVINFTSKLLSDSQIKTYRNSLKMPALILDKKEKMSSRFISSNGLVEDPC 712
AGNLS V TAE+IN+TSK+LS+SQ+K RN LKMPALILDKKEK +SRFISSNGLVEDPC
Sbjct: 860 AGNLSPVPTAEMINYTSKMLSESQMKLCRNILKMPALILDKKEKTASRFISSNGLVEDPC 919
Query: 713 AVEKERAMINPWTSEEREIFVDKLATFGKDFRKIASFLNYKTTADCVEFYYKNHKSDCFE 772
AVE ER MINPWT+EE+EIF+DKLA FGK+F+KIASFL++KTTADCVEFYYKNHKSDCFE
Sbjct: 920 AVENERTMINPWTAEEKEIFMDKLAIFGKEFKKIASFLDHKTTADCVEFYYKNHKSDCFE 979
Query: 773 KLKKKHDFSKQGKT-STNTYLVTTGKR-NRKMNAASLDILGEASEIAAAAQVDGRQL-IS 829
K KKK + KQGK+ S TYLVT+GK+ NR+MNAASLD+LG AS +AA A L
Sbjct: 980 KTKKKLELRKQGKSLSATTYLVTSGKKWNREMNAASLDMLGAASVMAARAGDSMENLQTC 1039
Query: 830 SGRISSGGRGDSRTSLGDDGIIERSSSFDVIGGERETAAADVLAGICGSLSSEAMSSCIT 889
G+ G D RT GD+G++ERSSS+D+I ERET AADVLAGICGSLSSEAMSSCIT
Sbjct: 1040 PGKFLLGAHHDYRTPHGDNGVVERSSSYDIIRNERETVAADVLAGICGSLSSEAMSSCIT 1099
Query: 890 SSVDPAEGQRDWRRQKADSVMRLPSTSDVTQNVDDDTCSDESCGEMDPSDWTDEEKSIFI 949
SS+DP EG R+ RQK S ++ P T +VTQ++D++TCSDESCGEMDP+DWTDEEK IF+
Sbjct: 1100 SSLDPGEGYREL-RQKVGSGVKRPLTPEVTQSIDEETCSDESCGEMDPADWTDEEKCIFV 1158
Query: 950 QAVTSYGKDFSMIARCIRTRSRDQCKVFFSKARKCLGLDLIHTGRGNVGPSVNDDANGGG 1009
QAV+SYGKDF+ I+RC+RTRSRDQCKVFFSKARKCLGLDLIH G NVG +DDANGGG
Sbjct: 1159 QAVSSYGKDFAKISRCVRTRSRDQCKVFFSKARKCLGLDLIHPG-PNVGTPESDDANGGG 1217
Query: 1010 SDTEDACVLETSSVNCSDKLGSKTDEELPSHVIHSNQEESCSAGAKNLQTDLNKPEDDNG 1069
SDTEDACV+E SV CS+K GSK +E+ V++ N +ES +G KNLQTDLN+ ++NG
Sbjct: 1218 SDTEDACVVEAGSVICSNKSGSKMEEDSLLSVLNINPDESDFSGMKNLQTDLNRSYENNG 1277
Query: 1070 ITPLNDKDSEAVKPVNNDAFRTESRSFEL--ESNNMNGMDNQSESVLDQKNAVELFKTAV 1127
I ++ KD E V + +D ++ ++ +SN++NG+D++S ++ +KN
Sbjct: 1278 IGRVDHKDDETVTNLVSDKCHQLEKTEQVFGDSNSLNGIDSKSLTLHVEKNGP------- 1330
Query: 1128 RDKVAEQGAVSVSAGEESDPCPSSSNAVEETNDVVAEASTEGFGNGLERYQPMLLENSLN 1187
E SVSA E +DP SNAV + D+ TEG +L E SLN
Sbjct: 1331 -CTKMEMDHESVSAVEATDPS-DRSNAVSQAEDL-----TEG---------NLLPETSLN 1374
Query: 1188 DVRDKICNVDACGESEI---VQDS-----------NTTGSAFDLYVDASSHSVSSKLDSV 1233
R++ + D G+ + V+DS N+T ++ VS +LD+
Sbjct: 1375 VRREENNDADTSGQMSLKCTVKDSEVKENALHQVPNSTSCPRFIFNSGCQDQVSVELDN- 1433
Query: 1234 DKPPLISLPQWNSHPAAAST-QDSSVIQCEKAFIQDRMSSTLEFQRSKDKSGHKSVVSDD 1292
KP +ISL Q +S A S +DSSVIQ EK Q STL+ + +KDK +KS+ D+
Sbjct: 1434 QKPGVISLLQESSLMAEDSVPKDSSVIQYEKTLDQGMSPSTLDLKETKDK--NKSIGVDE 1491
Query: 1293 YRQHLSVHSIVN---HVESPQILNGYPLPISTKKEMNGDINCRQLSE-VQSISKSDRNID 1348
Y QHLS HS++N + E Q + G PL K++MN D++C+ S + +SK DR+I
Sbjct: 1492 YHQHLSGHSLLNNAVNAELSQKVGGCPLQTPPKEDMNRDLSCKNPSSAAERLSKLDRDIQ 1551
Query: 1349 EPY-LAQDCYLRKCNSSMPHSSVTELPFLAENIEQTSDRRRAHSCSFSDTEKPSKNGDVK 1407
+ LAQDCYL+KCN S HS TELPFL++++E+TS++ RAH S SDTEK S+NGD K
Sbjct: 1552 SSHSLAQDCYLQKCNGSKSHSLGTELPFLSQSLERTSNQTRAHGRSLSDTEKTSRNGDFK 1611
Query: 1408 LFGKILSHPSSSQKSAFSSHDNGENGHHH-KQSSKASNLKFTAHHPPDGGAALLKFDRNN 1466
LFG+ILSHP S Q S++N + G H+ K SSK+ NLKFT HH DG K DRNN
Sbjct: 1612 LFGQILSHPPSLQNPNSCSNENDDKGAHNPKLSSKSVNLKFTGHHCIDGNLGASKVDRNN 1671
Query: 1467 YVGLENGPARSYGFWDGSKIQTGFSSLPDSAILLAKYPAAFGGYPASSS-KMEQQSLQAA 1525
Y+GLEN P SYGFWDG++IQTGFSSLPDS +LLAKYPAAF YP SSS K+EQQSLQ
Sbjct: 1672 YLGLENLPM-SYGFWDGNRIQTGFSSLPDSTLLLAKYPAAFSNYPMSSSTKIEQQSLQ-T 1729
Query: 1526 VVKSNERHLNGVAVVPPREISSSNGVVDY-QVYRSREGNKVQPFSVDMKQRQEFLFAEMQ 1584
VVKSNER+LNG++V P R++SSSNGV DY QV+R R+ K+QPF+VDMKQRQ+ LF+EMQ
Sbjct: 1730 VVKSNERNLNGISVFPTRDMSSSNGVADYHQVFRGRDCTKLQPFTVDMKQRQD-LFSEMQ 1788
Query: 1585 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNGFEALSSIQQQGKGMVGVNVVGR 1644
RNGFEA+SS+Q G+GMVG+NVVGR
Sbjct: 1789 ----------------------------------RRNGFEAVSSLQAPGRGMVGMNVVGR 1814
Query: 1645 GGILVGGGSCTGVSDPVAAIRMHYAK-AEQYGGQGGSIIREEESWR 1689
GGILVGG VSDPVAAI+MHYAK +Q+GGQGGSIIR++ESWR
Sbjct: 1815 GGILVGGACTPSVSDPVAAIKMHYAKTTDQFGGQGGSIIRDDESWR 1860
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147771380|emb|CAN62996.1| hypothetical protein VITISV_026902 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224112993|ref|XP_002316354.1| predicted protein [Populus trichocarpa] gi|222865394|gb|EEF02525.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224097993|ref|XP_002311103.1| predicted protein [Populus trichocarpa] gi|222850923|gb|EEE88470.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|357443347|ref|XP_003591951.1| Nuclear receptor corepressor [Medicago truncatula] gi|355480999|gb|AES62202.1| Nuclear receptor corepressor [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|358349062|ref|XP_003638559.1| Nuclear receptor corepressor [Medicago truncatula] gi|355504494|gb|AES85697.1| Nuclear receptor corepressor [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356533979|ref|XP_003535535.1| PREDICTED: uncharacterized protein LOC100806246 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449449471|ref|XP_004142488.1| PREDICTED: uncharacterized protein LOC101222167 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449487289|ref|XP_004157553.1| PREDICTED: uncharacterized LOC101222167 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|255588075|ref|XP_002534495.1| conserved hypothetical protein [Ricinus communis] gi|223525187|gb|EEF27889.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1696 | ||||||
| TAIR|locus:2100529 | 1656 | AT3G52250 [Arabidopsis thalian | 0.375 | 0.384 | 0.419 | 3.4e-205 | |
| ZFIN|ZDB-GENE-030616-81 | 2325 | ncor2 "nuclear receptor co-rep | 0.156 | 0.113 | 0.232 | 2.8e-19 | |
| UNIPROTKB|E9PGV6 | 914 | NCOR1 "Nuclear receptor corepr | 0.147 | 0.273 | 0.231 | 7.8e-19 | |
| UNIPROTKB|O75376 | 2440 | NCOR1 "Nuclear receptor corepr | 0.147 | 0.102 | 0.231 | 2.6e-18 | |
| UNIPROTKB|E2RKW5 | 2444 | NCOR1 "Uncharacterized protein | 0.147 | 0.102 | 0.231 | 3.7e-17 | |
| MGI|MGI:1349717 | 2453 | Ncor1 "nuclear receptor co-rep | 0.147 | 0.101 | 0.231 | 1e-16 | |
| UNIPROTKB|F1SDC8 | 1952 | NCOR1 "Uncharacterized protein | 0.147 | 0.128 | 0.231 | 8e-16 | |
| UNIPROTKB|F1MGM4 | 2436 | NCOR1 "Uncharacterized protein | 0.145 | 0.101 | 0.234 | 1.1e-15 | |
| UNIPROTKB|J9P1J2 | 1449 | NCOR1 "Uncharacterized protein | 0.147 | 0.172 | 0.231 | 1.2e-15 | |
| UNIPROTKB|E1BSW5 | 2480 | NCOR1 "Uncharacterized protein | 0.147 | 0.100 | 0.227 | 1.5e-15 |
| TAIR|locus:2100529 AT3G52250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1145 (408.1 bits), Expect = 3.4e-205, Sum P(6) = 3.4e-205
Identities = 285/680 (41%), Positives = 399/680 (58%)
Query: 517 ISSNFSAYADGENMLCDMILGANKELANEASEVLKKLLPRDHSNIDISGVANVFCCQNDS 576
+SS + A E++ +L ANK+ A E+S V +LLPRD ++ D S + Q DS
Sbjct: 660 VSSADDSMASKEDLFWAKLLSANKKYACESSGVFNQLLPRDFNSSDNSRFPGICQTQFDS 719
Query: 577 LVKEKFAKKKQLLRFKERVLTLKFKAFQHLWREDLRLLSIRKYRARSQKKCELSLRTTYT 636
V+EK A + LLR +E++L L+FKAFQ W++DL L++ KY+++S KK EL
Sbjct: 720 HVQEKIADRVGLLRAREKILLLQFKAFQLSWKKDLDQLALAKYQSKSSKKTELYPNAKNG 779
Query: 637 GYQKHRSSIRSRFSSPAGNL-SLVQTAEVINFTSKLLSDSQIKTYRNSLKMPALILDKKE 695
GY K S+R RFSS A S+V T E++++ KLL + +K +R+ LKMPA+ILD+KE
Sbjct: 780 GYLKLPQSVRLRFSSSAPRRDSVVPTTELVSYMEKLLPGTHLKPFRDILKMPAMILDEKE 839
Query: 696 KMSSRFISSNGLVEDPCAVEKERAMINPWTSEEREIFVDKLATFGKDFRKIASFLNYKTT 755
++ SRFISSNGL+EDPC VEKER MINPWTSEE+EIF++ LA GKDF+KIAS L KTT
Sbjct: 840 RVMSRFISSNGLIEDPCDVEKERTMINPWTSEEKEIFLNLLAMHGKDFKKIASSLTQKTT 899
Query: 756 ADCVEFYYKNHKSDCFEKLKKKHDFSKQGKTSTNTYLVTTGKR-NRKMNAASLDILGEAS 814
ADC+++YYKNHKSDCF K+KK+ + K+GK +TY++ K+ R+M AASLDILG+ S
Sbjct: 900 ADCIDYYYKNHKSDCFGKIKKQRAYGKEGK---HTYMLAPRKKWKREMGAASLDILGDVS 956
Query: 815 EIAA-AAQVDGRQXXXXXXXXXXXXXXXXXXXXXXXIIERSS-SFDVIGGERETAAADVL 872
IAA A +V + E S SFD + TA ADVL
Sbjct: 957 IIAANAGKVASTRPISSKKITLRGCSSANSLQHDGNNSEGCSYSFDF--PRKRTAGADVL 1014
Query: 873 AGICGSLSSEAMSSCITSSVDPAEGQRDWRRQKADSVMRLPSTSDV------------TQ 920
A G LS E ++SC+ +SV E D K + V++ P S
Sbjct: 1015 A--VGPLSPEQINSCLRTSVSSRERCMD--HLKFNHVVKKPRISHTLHNENSNTLHNENS 1070
Query: 921 NVDDDTCSDESCGEMDPSDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSK 980
N +DD+CS+ESCGE P WTD+E+S FIQ + +GK+F+ I+R + TRS DQCKVFFSK
Sbjct: 1071 NEEDDSCSEESCGETGPIHWTDDERSAFIQGFSLFGKNFASISRYVGTRSPDQCKVFFSK 1130
Query: 981 ARKCLGLDLIHTGRGNVGPSVN-DDAN-GGGSDTEDACVLETSSVNCSDKLGSKTDEELP 1038
RKCLGL+ I G GNV SV+ D+ N GGGSD ED C +E++S ++ + +K P
Sbjct: 1131 VRKCLGLESIKFGSGNVSTSVSVDNGNEGGGSDLEDPCPMESNSGIVNNGVCAKMGMNSP 1190
Query: 1039 SHVIHSNQEESCSAGAKNLQTDLNKPEDDNGITPLNDKDSEAVKPVNNDAFRTESRSFEL 1098
+ + NQ+ +G+ N++ DL++ E++NG L KD + VNN S
Sbjct: 1191 TSPFNMNQDGVNQSGSANVKADLSRSEEENGQKYLCLKDDNNL--VNNAYVNGGFPSLVS 1248
Query: 1099 ESN----NMNGMDNQSESVLDQKNAVELFKTAVRDKVAEQGAVSVSAGEESDPCPSS--S 1152
ES ++N +++QS++ K+ +L + + V SV+ E C S S
Sbjct: 1249 ESCRDLVDINTVESQSQAAGKSKSN-DLMSMEIDEGVL----TSVTISSEPLYCGLSVLS 1303
Query: 1153 NAVEETNDVVAEASTEGFGN 1172
N + ET E S +G G+
Sbjct: 1304 NVIVETP---TEISRKGSGD 1320
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| ZFIN|ZDB-GENE-030616-81 ncor2 "nuclear receptor co-repressor 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E9PGV6 NCOR1 "Nuclear receptor corepressor 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|O75376 NCOR1 "Nuclear receptor corepressor 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2RKW5 NCOR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1349717 Ncor1 "nuclear receptor co-repressor 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1SDC8 NCOR1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1MGM4 NCOR1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|J9P1J2 NCOR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BSW5 NCOR1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
 |
 |
 |
 |
 |
 |
 |
 |
 | eugene3.00102138 | hypothetical protein (1659 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1696 | |||
| cd11661 | 46 | cd11661, SANT_MTA3_like, Myb-Like Dna-Binding Doma | 9e-09 | |
| smart00717 | 49 | smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII | 8e-08 | |
| cd00167 | 45 | cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- | 1e-07 | |
| cd00167 | 45 | cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- | 1e-07 | |
| smart00717 | 49 | smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII | 4e-07 | |
| pfam00249 | 47 | pfam00249, Myb_DNA-binding, Myb-like DNA-binding d | 7e-07 | |
| pfam00249 | 47 | pfam00249, Myb_DNA-binding, Myb-like DNA-binding d | 7e-07 |
| >gnl|CDD|212559 cd11661, SANT_MTA3_like, Myb-Like Dna-Binding Domain of MTA3 and related proteins | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 9e-09
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 724 WTSEEREIFVDKLATFGKDFRKI-ASFLNYKTTADCVEFYY 763
W+ E ++F + L +GKDF I FL +K+ + VEFYY
Sbjct: 2 WSESEAKLFEEGLRKYGKDFHDIRQDFLPWKSVGELVEFYY 42
|
Members in this SANT/myb family include domains found in mouse metastasis-associated protein 3 (MTA3) proteins and arginine-glutamic dipeptide (RERE) repeats proteins. SANT (SWI3, ADA2, N-CoR and TFIIIB) DNA-binding domains are a diverse set of proteins that share a common 3 alpha-helix bundle. MTA3 has been shown to interact with nucleosome remodeling and deacetylase (NuRD) proteins CHD4 and HDAC1, and the core cohesin complex protein RAD21 in the ovary, and regulate G2/M progression in proliferating granulosa cells. RERE belongs to the atrophin family and has been identified as a nuclear receptor corepressor; altered expression levels of RERE are associated with cancer in humans while mutations of Rere in mice cause failure in closing the anterior neural tube and fusion of the telencephalic and optic vesicles during embryogenesis. Length = 46 |
| >gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains | Back alignment and domain information |
|---|
| >gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains | Back alignment and domain information |
|---|
| >gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains | Back alignment and domain information |
|---|
| >gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains | Back alignment and domain information |
|---|
| >gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1696 | |||
| KOG1878 | 1672 | consensus Nuclear receptor coregulator SMRT/SMRTER | 100.0 | |
| KOG1878 | 1672 | consensus Nuclear receptor coregulator SMRT/SMRTER | 100.0 | |
| KOG1194 | 534 | consensus Predicted DNA-binding protein, contains | 99.52 | |
| PF00249 | 48 | Myb_DNA-binding: Myb-like DNA-binding domain; Inte | 99.01 | |
| KOG4329 | 445 | consensus DNA-binding protein [General function pr | 98.92 | |
| KOG4167 | 907 | consensus Predicted DNA-binding protein, contains | 98.81 | |
| TIGR01557 | 57 | myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c | 98.8 | |
| smart00717 | 49 | SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi | 98.6 | |
| cd00167 | 45 | SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do | 98.57 | |
| KOG4167 | 907 | consensus Predicted DNA-binding protein, contains | 98.45 | |
| PF00249 | 48 | Myb_DNA-binding: Myb-like DNA-binding domain; Inte | 98.39 | |
| smart00717 | 49 | SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi | 98.21 | |
| PF13921 | 60 | Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: | 98.16 | |
| cd00167 | 45 | SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do | 97.98 | |
| KOG3554 | 693 | consensus Histone deacetylase complex, MTA1 compon | 97.57 | |
| COG5259 | 531 | RSC8 RSC chromatin remodeling complex subunit RSC8 | 97.43 | |
| KOG4329 | 445 | consensus DNA-binding protein [General function pr | 97.38 | |
| KOG1194 | 534 | consensus Predicted DNA-binding protein, contains | 97.37 | |
| KOG0457 | 438 | consensus Histone acetyltransferase complex SAGA/A | 97.28 | |
| PF13921 | 60 | Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: | 97.06 | |
| PLN03212 | 249 | Transcription repressor MYB5; Provisional | 97.01 | |
| KOG1279 | 506 | consensus Chromatin remodeling factor subunit and | 96.91 | |
| PLN03091 | 459 | hypothetical protein; Provisional | 96.57 | |
| PLN03212 | 249 | Transcription repressor MYB5; Provisional | 96.38 | |
| KOG4468 | 782 | consensus Polycomb-group transcriptional regulator | 96.1 | |
| PLN03091 | 459 | hypothetical protein; Provisional | 95.49 | |
| TIGR01557 | 57 | myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c | 95.46 | |
| COG5118 | 507 | BDP1 Transcription initiation factor TFIIIB, Bdp1 | 95.14 | |
| KOG3554 | 693 | consensus Histone deacetylase complex, MTA1 compon | 94.98 | |
| COG5114 | 432 | Histone acetyltransferase complex SAGA/ADA, subuni | 94.88 | |
| COG5259 | 531 | RSC8 RSC chromatin remodeling complex subunit RSC8 | 93.42 | |
| KOG0048 | 238 | consensus Transcription factor, Myb superfamily [T | 92.35 | |
| KOG0049 | 939 | consensus Transcription factor, Myb superfamily [T | 92.11 | |
| KOG1279 | 506 | consensus Chromatin remodeling factor subunit and | 90.6 | |
| KOG4468 | 782 | consensus Polycomb-group transcriptional regulator | 89.39 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 85.92 | |
| KOG0457 | 438 | consensus Histone acetyltransferase complex SAGA/A | 85.46 | |
| KOG0050 | 617 | consensus mRNA splicing protein CDC5 (Myb superfam | 83.51 |
| >KOG1878 consensus Nuclear receptor coregulator SMRT/SMRTER, contains Myb-like domains [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-85 Score=798.07 Aligned_cols=1337 Identities=20% Similarity=0.145 Sum_probs=1012.7
Q ss_pred CCCCcceecCCCccccCCCCcCCccccCCCCCCcccCCCCCCCCCCCccc--ccCCCccc-ccc----------------
Q 000305 5 ESTRISVSRGDGKYGRNSRENRSSFCQSDCKGYAWDTSNGYATTPGRLHE--VNCNQRSV-DDM---------------- 65 (1696)
Q Consensus 5 ~~~rp~~srgd~~y~r~~r~~rg~~~q~~~r~~~~e~~n~~~~~~~r~~~--~~~~~rsv-~~~---------------- 65 (1696)
.++|+..|+++|.|.++.+|+|-+..|..|.+..|++++++...+.++++ .++.+|++ +++
T Consensus 127 ~~rk~~ask~r~~yek~fpe~R~sReqqER~~~~~~ts~rse~~f~s~l~qe~~~k~~r~~a~iP~~~~D~~~~v~nkle 206 (1672)
T KOG1878|consen 127 SRRKAKASKTREYYEKQFPEIRKSREQQERWQRASETSARSEHEFSSILDQENAEKQMRQLAVIPRMLTDSARQVRNKLE 206 (1672)
T ss_pred CcccchhhhhhhhhhhhCchHHHHHHHHHHHhhhhhhcccccccchhhhccccchhhhhhhhccCcccccchhhhhhhhc
Confidence 47899999999999999999999999999999999999999988888888 55666666 333
Q ss_pred ----ccC-CCCCCCC-----------------------------------------------------------------
Q 000305 66 ----LTY-PSHPQSD----------------------------------------------------------------- 75 (1696)
Q Consensus 66 ----l~~-~s~p~s~----------------------------------------------------------------- 75 (1696)
|+| |--+|.|
T Consensus 207 ~~N~~~~d~nkv~k~~~~~n~Ws~~Ek~~fk~rf~~H~knf~~~as~~erkSv~d~vlfyy~nkkte~yk~~~~r~~~r~ 286 (1672)
T KOG1878|consen 207 NMNSLMKDPNKVHKDRQRMNEWSPEEKELFKSRFAQHVKNFGLIASFFERKSVSDCVLFYYLNKKTENYKKLVRRPKKRS 286 (1672)
T ss_pred cCCccccCcccccchHHHhhhccccccccccchhhhcCcchhhhhhhhcccchhhceeeeeecccchhHHhhhccccccc
Confidence 121 0011222
Q ss_pred --------------cc-ccccccccCccc-cccccccCCCCccccccccCC--CCccccccccCCCCCCCCCCccCCCCC
Q 000305 76 --------------FV-TWDHLQLKDQHD-NKIGSVNGLATGQRCESENSL--DWKKIKWTRSGSLSSRGSGLSHSSSSK 137 (1696)
Q Consensus 76 --------------~~-~w~q~~lkd~~d-nk~~~vn~~~tg~r~dre~~~--~wkp~~w~~sgs~ss~~sg~shsss~~ 137 (1696)
.. +|++..|+|..+ |+..+++..-..+.+.||... .-++++|.- +.+++.-++|||.++.+
T Consensus 287 ~s~~~~~~~~~~~Ele~~ee~~~ledpkes~~~~~~~d~~~~~~~~resv~~e~~~~Ple~~-ei~a~e~de~see~ev~ 365 (1672)
T KOG1878|consen 287 QSYKVGAFPSPEEELEKEEEKPELEDPKESFPKNKLIDYFGERTVERESVNGEEPFMPLEPY-EIFAIEPDELSEEMEVA 365 (1672)
T ss_pred hhccccccCChHhhhhhhhhcccccCccccccccccccccccccccccccccCCCCCCCCCc-cccccCccccchhhhhh
Confidence 13 899999999987 889999999999999999999 888889998 99999999999999999
Q ss_pred CCCCCCCCCCCCcccccccccccCCCCCccceeccCccccccccccCCCCc-ccchhhhhhccccccCCCCCCCCCCccc
Q 000305 138 SMGGVDSSEGKTDFQVKNATSIQSPSGDAATYATSGVLFEETTSRKKPRLG-WGEGLAKYEKKKVEVPDVSGNKDGVFNF 216 (1696)
Q Consensus 138 s~~~~ds~e~~~~~~~k~~t~~~s~s~da~a~~~~~~~see~~~rkk~rlg-wgeglakyekkkv~~p~~~~n~dg~~~~ 216 (1696)
.+|.+|....++.+.|+.+|..++..++|.||.+..|..+|+..++|.+++ |+++++||++++|++ ..++++...+
T Consensus 366 k~Glveh~R~~aai~p~vvt~tes~c~na~a~~~~r~N~d~~ld~~k~k~~t~~e~~~k~k~~~vav---t~s~~~~e~m 442 (1672)
T KOG1878|consen 366 KSGLVEHGREWAAILPKVVTKTESQCKNAYAKYKNRHNLDEPLDQHKQKVRTRAEIRDKSKSTRVAV---TFSAKEDETM 442 (1672)
T ss_pred hccchhhhhhHHHhcCccceecccchhhHHHhhhhhhcchhhhhhhhcccccHHHHHhhhcCccccc---cccccccccc
Confidence 999999999999999999999999999999999999999999999999999 999999999999999 7778999999
Q ss_pred cCCCCccccccccccccCCCccccCCCCCCCCCCcccCCCCCcchhcccccccccccccccccC-CCCcccccccccccc
Q 000305 217 SSNAEPLQSLSSNLAEKSPRVMGFSDCASPATPSSVACSSSPGVEEKAFGKAVSVDNDVSNLCG-SPSIVSQNHREGFLF 295 (1696)
Q Consensus 217 ~~n~e~~~~~~~nl~dksp~~~~~~dc~spatpssvacssspg~~~k~~~k~~n~~~~~~n~~~-sp~~~~~~~~~~~~~ 295 (1696)
..+.|..+.+.+++++++|+....-+..||.|+++|+|+++|+++.++..+.+.+.-.++|+|. .+++...+|++.|.+
T Consensus 443 E~~neeE~~~d~e~l~~s~t~~vv~nd~s~t~~~sv~~~s~Pt~~~~ss~~~~~n~~r~p~e~~~q~s~~~~i~te~~~~ 522 (1672)
T KOG1878|consen 443 EISNEEEETEDAEALNYSGTKQVVWNDDSSTTNLSVAIESSPTPDTESSSWEGMNQPRRPNECEMQYSAMNGIKTEPMIE 522 (1672)
T ss_pred ccccchhcccchhhhccCcccccCCCCCCCCccccccccccCCccccccchhhhcCCCCCccccccccccccccccCCch
Confidence 9999999999999999999877777788889999999999999999999999999899999999 999999999999999
Q ss_pred cccccCCcccchhhhHHHHhhccCCCCCCCccccccccccceehccchhhhhhhhhhhhhhhhhhhhhhcccccCCcCCC
Q 000305 296 NLEKLDTNSIGNLGSSLVELLQYDDPSSVDSSFVRSTAMNKLLVWKGDILKTLEMTETEIDSLENELKSLKSVLGSTSPC 375 (1696)
Q Consensus 296 ~l~~ld~~~~~~lg~~l~ellq~dd~~s~ds~~~r~t~~~kll~~k~~isk~le~te~eid~le~elks~~~~~~~~~~~ 375 (1696)
+.+++|.+.....|+-|.|||..||..+.|+..+.+|+||.++-|| |.+||+|.||+. |++...+|.+.. -
T Consensus 523 ~~eE~d~i~~e~~gpp~~~ll~t~t~~~~e~~~~~~t~~~d~~~~k----k~~e~ae~eie~-e~ke~~~k~e~~----a 593 (1672)
T KOG1878|consen 523 EVEEEDAIGQEEGGPPLAELLNTDTTSSAEPRRSKGTAENDKKPLK----KDTERAEREIET-EGKERTGKAETR----A 593 (1672)
T ss_pred hhhhhccccccccCccHHHHhcCCcccccchhhhhhhhccccchhh----hhcccchhhccc-cccccchhhhhh----c
Confidence 9999999999999999999999999999999999999999999999 999999999998 888888888875 2
Q ss_pred CcccccccccC--CCCcccccccccccccCCCCccccc-CCCcccccCCCCCCcccccCCCCCccCCCCCcccccccccc
Q 000305 376 PVTSISLSVED--NANPFNKQGTVSNSIIRPAPLQIDC-GDLSVENMPDCSHGLEEVHGNSKDEDIDSPGTATSKFVEPS 452 (1696)
Q Consensus 376 p~~~~~~~~~~--~~~~~~eq~~~s~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ee~~dspg~a~~k~vep~ 452 (1696)
-+...++++++ ++....|++.+ +|.|+.... -..+..+.|+..++ ++++..+ |+|+- +.+.
T Consensus 594 q~~~~~~~~d~~~dE~~e~E~e~~-----~~dp~astgS~~kn~~~aPvD~a~---~p~~~~~---dsp~~-----~~~~ 657 (1672)
T KOG1878|consen 594 QRVPKPVDDDGSADEIDEMEIEDS-----LPDPLASTGSRRKNSVKAPVDLAG---SPADMEG---DSPEP-----PDQD 657 (1672)
T ss_pred ccCCCccccccchhcccccccccc-----cCCcccCccccccccccCcccccc---Ccchhhc---cCCCC-----cCcc
Confidence 33456677888 78888899885 444554443 23444488888777 4566666 67776 3443
Q ss_pred ccccCCCCcccccCCcccccccccccccccccccCCCCCccccccCCC-ccCCCccccccccccccccCcccccccchhH
Q 000305 453 SFVKPVSPSNMLKNGESFGVLDTVHSSNTEVKCTMPGSSFGEVVAGAS-TCGDGDMILESKNDALISSNFSAYADGENML 531 (1696)
Q Consensus 453 ~~~~~~~~~~~~~~~e~~g~~~~~~s~~m~~~~~~~~~~~~~~~~~~~-~c~d~~~~~e~~~~~~~s~d~~s~~~~~~SL 531 (1696)
+ .++.+....+ |+..+.. |+ +.|+ .....++++ +-++ .++. .+++=...+..+..+
T Consensus 658 a-----a~~~~~~~~~---~i~~~~~--~~--~dv~---~k~~~spa~rs~qe---~~D~-----~~ps~~p~~~ke~~~ 714 (1672)
T KOG1878|consen 658 A-----APTQPPDQDP---DIEEVIQ--RD--IDVP---VKTLLSPASRSGQE---KIDF-----ETPSHVPRIQKESEV 714 (1672)
T ss_pred c-----cccCCCCCCC---chhhhcc--hh--cccc---cccccChhhhccCC---cccc-----cCcCCCccccCcchh
Confidence 4 5555555554 3333333 44 2233 222333333 2222 1111 111112445577888
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccCc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000305 532 CDMILGANKELANEASEVLKKLLPRDHSNIDISGV-ANVFCCQNDSLVKEKFAKKKQLLRFKERVLTLKFKAFQHLWRED 610 (1696)
Q Consensus 532 vQ~IYaENRKkAeeAH~iL~gLgPqvelPLd~~~v-yNqdt~QyhEnIkeklAeRKqLLrfKEr~La~KY~aL~eaWeek 610 (1696)
|+...-+|.|.+....-++..+++.++.-....++ +-+.|.|.+-.+.++.+ +--.++.+..++-..|+....-|.++
T Consensus 715 i~p~p~ap~k~s~~~~Gv~n~~~~i~h~~~sek~a~~~g~~t~~~sh~qe~s~-sVG~~r~r~~r~~d~~k~ael~~vk~ 793 (1672)
T KOG1878|consen 715 IQPPPHAPTKISESPDGVRNDPLLIDHYYVSEKGAISPGPCTQLSSHLQESSA-SVGGRRKRLERSNDQFKAAELSGVKQ 793 (1672)
T ss_pred ccCCCCCCcccccCCCCCcCCccccccccccCCcccCCCccccccchhhhhcc-cccccccccccccchhhhccccccch
Confidence 89888889777776666665544444211111122 22355677666666665 33345555556666788888889988
Q ss_pred HHHHhhhhhhhhchhhhhhcccccCCccccCcccccccCCCCCCC---CCcccHHHHHHHHHhhhcchhhhhhhcccccC
Q 000305 611 LRLLSIRKYRARSQKKCELSLRTTYTGYQKHRSSIRSRFSSPAGN---LSLVQTAEVINFTSKLLSDSQIKTYRNSLKMP 687 (1696)
Q Consensus 611 ~Rlls~~KrRAKe~KkRE~~eR~~FPEl~KQRSSlReRFsRR~Gr---LS~vseAEI~evl~qlekDp~~K~mR~aAvIP 687 (1696)
+.-+....+.+++.+..+.......++.-.+-...|.++.....+ -..+-+-|++.+++...-....+..|.+.++|
T Consensus 794 ~qqesl~~~qaqea~s~~~~~~svt~g~L~~gt~vRl~~~~Sp~rs~~~~hVi~le~~~g~es~~p~~eiap~r~~lk~~ 873 (1672)
T KOG1878|consen 794 EQQESLQVPQAQEAKSENAYPGSVTPGVLVKGTIVRLVNEDSPSRSVAKGHVITLEYEGGMESSVPPHEIAPKRIYLKMP 873 (1672)
T ss_pred hhhhhhcchhhhhcccccCCccccccceeeeceeeecccCCCCCcccccCceeeeeccccccccCCcccccchhhhhccc
Confidence 766666666666665555544444454444444455555321111 01111223333344444444556778888999
Q ss_pred ccccChhhhccceeccCCCCCcchHHHHhhcccCCCCC-HHHHHHHHHHHHhcCCCHHHHHhhcCCCChhHHHHHhhhcc
Q 000305 688 ALILDKKEKMSSRFISSNGLVEDPCAVEKERAMINPWT-SEEREIFVDKLATFGKDFRKIASFLNYKTTADCVEFYYKNH 766 (1696)
Q Consensus 688 pMILDpeER~~~kFiDtNgLVeDP~av~Kerq~in~WT-EEEkeiF~EKylqhPKnFGkIAs~Lp~KTvsDCVlfYYltK 766 (1696)
.|+++..|+.+.+|+-+||.+.++.+....+.+..+|+ -|+.+.|+.....++|.|-.|+.++..++.++ +.+||+.
T Consensus 874 a~v~~~~E~~msr~i~tn~~~~~~~~~~~~~~g~~P~~t~E~~e~~Ln~lr~~~k~~P~i~~s~~a~kt~q-~~~~lkp- 951 (1672)
T KOG1878|consen 874 AVVSAGAEGLMSRAIPTNNHSPALLKEPIVQQGGIPRRTVETPEDILNPLRPTAKSTPPIRQSLGAFKTQQ-QQQQLKP- 951 (1672)
T ss_pred ccccccccccccccccCCCCCccccccchhhccCCCcccccchHHHhhhccccCCCCCchHHHHHhhhhhc-cchhhcc-
Confidence 99999999999999999999999999888889999999 99999999999999999999999999999999 4444444
Q ss_pred cCcChHHHHhhcccCCCCCCc--ccccccccccc-ccccccchhhhhchhHHHHHHhhhccccccccccccCCCCCCCCC
Q 000305 767 KSDCFEKLKKKHDFSKQGKTS--TNTYLVTTGKR-NRKMNAASLDILGEASEIAAAAQVDGRQLISSGRISSGGRGDSRT 843 (1696)
Q Consensus 767 Ks~nYKkLlrk~~lRKRGrss--~~nyL~~sgkk-Nre~naASlDilgaaS~~Aa~a~~a~~~~~sS~~i~~~g~~esk~ 843 (1696)
...+.-.++++ -+|++. ..+|+....++ ++++-++.+||++..+..+-...++...+.++..++++++.....
T Consensus 952 ~~s~~~~~Ik~----~~~rs~~~i~~y~~~~~r~~k~~~~aa~Tdik~Dg~st~~a~k~av~~~i~sP~~t~~~~~s~~v 1027 (1672)
T KOG1878|consen 952 QQSNLMQTIKN----ENGRSIHEIPPYQQQQQRPQKEGSIAAGTDIKRDGSSTSGAPKHAVQRLISSPDETLRGLFSLPV 1027 (1672)
T ss_pred hhhhHHHHHHh----hcccchhcccHhhhhcchhhhhhhccccCcccccCccccccchhheeccccCchhhcCCCCcccc
Confidence 44444455553 244432 24777666555 788889999999875332222223322112334444443322111
Q ss_pred CCCCCCcccc-CCCcccCCCcccchhccccccccccccccccccccccCCCCcc--------cchhhhhcc-----cccc
Q 000305 844 SLGDDGIIER-SSSFDVIGGERETAAADVLAGICGSLSSEAMSSCITSSVDPAE--------GQRDWRRQK-----ADSV 909 (1696)
Q Consensus 844 ~e~~dg~~er-ss~~D~~G~ERETvaAdvkAgItgSmSsEa~ssc~TtSvDP~~--------G~re~K~~K-----v~s~ 909 (1696)
-...-...++ ...++..| .-|+.+.+.+ .+.+.++-.++|-..+..+.. +.+..+... -++.
T Consensus 1028 ~~~~~~~~~g~~~~~~~~~--~~ta~~~i~s--v~~~~~~~~~~~hr~s~S~~s~~a~~lP~~~~~~~~~~sp~l~~~ss 1103 (1672)
T KOG1878|consen 1028 IPEQQRPAEGCKYEQPKHG--QNTASASISS--VDQGPPVLGPALHRDSLSQLSTSATHLPPPHLVSMQRPSPTLHNRSS 1103 (1672)
T ss_pred cccccchhhcccccccccC--Cccccccccc--ccCCCcccchhhcccccccccchhhcCCCcccccccCCccccccccc
Confidence 0000001111 01122222 1122222211 123333333333332222211 111111000 0011
Q ss_pred ccCCCCcccccccCCCCCCcccCCCCCCCCCCHH-HHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhCCC
Q 000305 910 MRLPSTSDVTQNVDDDTCSDESCGEMDPSDWTDE-EKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKARKCLGLD 988 (1696)
Q Consensus 910 ~~~P~t~dvtq~~deet~Sd~S~gEm~ssrWTdE-Ek~lFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~kyRKrLnLD 988 (1696)
..++ .++-+- +..|++++|.+.+...|+.. |+..|......+||.+.-|+..+++....||+.||..|++...|.
T Consensus 1104 ~t~~---~~tsn~-~~~~se~s~~~~~~i~~v~~~e~~~r~~~~~dlgR~~~~is~~~~~~~~~~~~~f~sa~r~~~qLe 1179 (1672)
T KOG1878|consen 1104 STEP---TGTSNP-DNRESEHSTTPEDAIHPVTNNENFSRIRNAIDLGRSHTPISNYPANIDRSMKSSFASAYRHERQLE 1179 (1672)
T ss_pred cccc---ccCCCc-cccccccccCcccCCccccccchhhhccchhhhccccccccccccccChhhhhhHHHHHHHHhccc
Confidence 1111 111111 23567788888888999987 999999999999999999999999999999999999999999998
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCcccccccCcccccCCCCCccccCCCcccccccccccchhhccccccccCCCCCCC
Q 000305 989 LIHTGRGNVGPSVNDDANGGGSDTEDACVLETSSVNCSDKLGSKTDEELPSHVIHSNQEESCSAGAKNLQTDLNKPEDDN 1068 (1696)
Q Consensus 989 ~il~e~~~~g~P~sDda~gggS~tsdac~~E~~s~~~sd~s~~~~~~d~p~~~~~~~~~~s~~~~~~~~~a~L~~~e~~~ 1068 (1696)
..-.-+..+ -+-.-.++.++|-.++|.++.+.++...+++.++..++|..-.+++.+..++.+.++++.++.....-|
T Consensus 1180 ~~p~~~~~v--av~n~~~~i~~D~~ts~~m~~N~~~~n~~v~~~~r~lsP~~~~i~~~y~a~p~g~~~~s~~~~~~~~~n 1257 (1672)
T KOG1878|consen 1180 PTPSYPNIV--AVQNIRQTITNDYITSQQMLVNPVNGNGQVNDDGRGLSPTEHAISQGYPAFPRGIIDLSQIPRAPPKFN 1257 (1672)
T ss_pred CCCCCCcce--ehhccccccccCcccchhhhcCccccccccCccccccCcccchhhccCCccCCCccccccCCCCCcccC
Confidence 743322111 011124567789999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCcccccccccchhhhccc-----chhcccccccCccccchhhhhhhhhhhhhhHHhhhhhhhcccceeecCC
Q 000305 1069 GITPLNDKDSEAVKPVNNDAFRTESR-----SFELESNNMNGMDNQSESVLDQKNAVELFKTAVRDKVAEQGAVSVSAGE 1143 (1696)
Q Consensus 1069 g~~~~~~~d~~~~~~~~~d~~~~~~~-----~~~~d~~~~~~~~~qs~~~~~~~~~~~s~~~~~~d~~~~~~~~s~~~~~ 1143 (1696)
+. .+...+.+ .|++.|+.++.| .++.|+..+++.+.|+.+.+ ..+++ ||| +.+...+++..
T Consensus 1258 ~~-~~~l~~~~---~la~~p~a~~~F~sr~~ns~~~~~~~~t~ea~~~~a~----~~r~~---E~d---~~~~t~~~i~~ 1323 (1672)
T KOG1878|consen 1258 PS-GLPLAAMD---RLAYAPYAMSSFPSRKENSARDSPGIPTHEAQSQAAG----RLRSR---ERD---EGRETEVTISS 1323 (1672)
T ss_pred CC-CCccchhh---hhhhCccccccCCCccccccccCCCCchhhhhhhhhh----HHhhh---hcc---ccccccceeec
Confidence 97 55555544 577788888885 66899999999998888877 34433 566 45678889999
Q ss_pred CCCCCCCCcchhhccccccccccccccCCCcccccccccccccccccccccccCccccccccccccccccccccc-----
Q 000305 1144 ESDPCPSSSNAVEETNDVVAEASTEGFGNGLERYQPMLLENSLNDVRDKICNVDACGESEIVQDSNTTGSAFDLY----- 1218 (1696)
Q Consensus 1144 ~~~~~~s~~~~~~~~~~~v~e~~~~~~~n~~~~~~~~~~~~sl~~~~~~~~~~d~~~~~~~~~~s~~~~n~~~~~----- 1218 (1696)
++++|. .+.+..+++| |++.++. ++..++.+++.. +.++||.+++|.|++.++
T Consensus 1324 s~~~~~-----~~~~~~~~~e----~s~~~sg-~gs~~~r~s~~~------------~qq~~q~~~rtq~~~lq~~s~p~ 1381 (1672)
T KOG1878|consen 1324 SPLYCG-----LSVLSNPGVE----GSRGGSG-QGSPSPRFSSKN------------QQQVMQAANRTQNSGLQPPSAPH 1381 (1672)
T ss_pred cccccc-----ccccccCCcc----ccccccC-CCCCCchhhhhh------------hhhhhhhhhhhcccccCCccccc
Confidence 999997 6677788888 5555555 777888888888 889999999999999776
Q ss_pred ---cCCCCcceeeccccCCCCCccccCCCCCCCccccc-cchhhHHHHHHhhhccccccccccccccccCCcccccCccc
Q 000305 1219 ---VDASSHSVSSKLDSVDKPPLISLPQWNSHPAAAST-QDSSVIQCEKAFIQDRMSSTLEFQRSKDKSGHKSVVSDDYR 1294 (1696)
Q Consensus 1219 ---~~sc~~~v~~~~~s~~~p~~~sl~~~n~~~~~~s~-~~s~~~q~ek~~~q~~~~st~~~~~~~d~~~~~s~~~d~~~ 1294 (1696)
+..|+|+|+.++|. +.|..++.+..|++|++.|. +.+.++|+.+||+.+|.+.+|++ |+..
T Consensus 1382 g~~~~~~l~~v~~~~~t-~~p~g~~~~~~~p~~~~~s~~~s~l~~~vd~t~~~~~~~~~le~--------------~~r~ 1446 (1672)
T KOG1878|consen 1382 GTRYPECLHAVPPSVST-ELPIGVSAPRGNPAAHAESASGSSLGGQVDETHDLGWEPNNLEL--------------DGRL 1446 (1672)
T ss_pred ccCCcccccCCCccccc-cccccCcCCCCCccccCcccccCCCcccccccccccCCcccccc--------------cchh
Confidence 35699999999999 99999999999999999999 99999999999999999999999 8888
Q ss_pred cccCccccccccccccccCCccccccccccccCcccccchh--hhhhc-----ccccCCCCCccccccccccccCCCCCC
Q 000305 1295 QHLSVHSIVNHVESPQILNGYPLPISTKKEMNGDINCRQLS--EVQSI-----SKSDRNIDEPYLAQDCYLRKCNSSMPH 1367 (1696)
Q Consensus 1295 q~l~~~~l~~~~~~~~i~~gyp~qip~kkemn~d~~c~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1367 (1696)
|.+ | |+ .|.||..++-.|. ..|.++. +++++ ++++..+.++.+++ +.+.||......
T Consensus 1447 ~a~-~-----~~--------~~~q~g~~~~~~~-~~~~~~~~~~s~~~s~~~r~~s~~v~~~a~~~~-~p~k~~~~~~~~ 1510 (1672)
T KOG1878|consen 1447 QAL-G-----HV--------NPEQIGHLKLTNT-ESCQNPQRSSSQDPSRIPRPKSDLVVKTARTGE-FPLKKCTPSAPK 1510 (1672)
T ss_pred hhc-c-----cC--------CHHhhcchhhcCc-hhhcccccccccCCCCCCccCCcchhcccccCC-CCccccCcccCC
Confidence 877 6 77 8999999999999 8999887 66655 89999999999999 999999999988
Q ss_pred CCcccccccccccccccCccccccccCCCCCcccCCCCeeeeeecccCCCCCCCCCCcccCCCCCCCCC--CCCccc---
Q 000305 1368 SSVTELPFLAENIEQTSDRRRAHSCSFSDTEKPSKNGDVKLFGKILSHPSSSQKSAFSSHDNGENGHHH--KQSSKA--- 1442 (1696)
Q Consensus 1368 ~~~~elp~~~~~~~~~~~~~r~~~~s~s~~ek~~rngdvklfg~ils~~~~~q~~~~~~~~~~~~~~~~--k~~~~s--- 1442 (1696)
|.-.-+.+..+++-|+|+.+.++++.-.+||++||||-|||-+ +++.+.+|. .+...+
T Consensus 1511 ------p~~~~~~~~~s~~~r~~s~s~~~s~~~~~~~sl~~~gs~ls~d-----------~~e~~s~~s~p~~~~e~~~~ 1573 (1672)
T KOG1878|consen 1511 ------PLAVSHKEGASGPSRSKSFSLSDSERLHKNGSLKLHGSVLSTD-----------ANEIKSPHSSPGIVREKSTL 1573 (1672)
T ss_pred ------CCCCccccccCCCCCchhhccccccccccccccccccccccCc-----------cccccCCCCCCCCccccccc
Confidence 7777777888999999999999999999999999999999999 777777754 443333
Q ss_pred cccccccCCCCCCCcccccCCCCCCCCccCcccccccccCCCccccCCCCCCchHHHHhhcccccCCCC
Q 000305 1443 SNLKFTAHHPPDGGAALLKFDRNNYVGLENGPARSYGFWDGSKIQTGFSSLPDSAILLAKYPAAFGGYP 1511 (1696)
Q Consensus 1443 ~~~~~tgh~~~d~~~~~~k~~~~~~~glen~p~~syg~wdg~~iqtg~sslp~~~~~lak~paafsny~ 1511 (1696)
+.+-.|.||.+ ++-.|.|+|.-+|||||| ||++||+++.+++-||+||+..+
T Consensus 1574 ~~~~~~~~~~~------------e~~~~~~~p~~~~~~~~~-----~l~slpesa~~~ss~~e~~~~~~ 1625 (1672)
T KOG1878|consen 1574 SRLEDTRHHYA------------EQQHLQNVPGPSYGFWDG-----GLTSLPESAKLLSSCPEAFSTVL 1625 (1672)
T ss_pred ccHHHHHHHHh------------hccccccCCCcccccccc-----ccccChhhccccCcchhhhcccc
Confidence 34557888887 567899999999999999 99999999999999999999765
|
|
| >KOG1878 consensus Nuclear receptor coregulator SMRT/SMRTER, contains Myb-like domains [Transcription] | Back alignment and domain information |
|---|
| >KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription] | Back alignment and domain information |
|---|
| >PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins | Back alignment and domain information |
|---|
| >KOG4329 consensus DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription] | Back alignment and domain information |
|---|
| >TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class | Back alignment and domain information |
|---|
| >smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains | Back alignment and domain information |
|---|
| >cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains | Back alignment and domain information |
|---|
| >KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription] | Back alignment and domain information |
|---|
| >PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins | Back alignment and domain information |
|---|
| >smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains | Back alignment and domain information |
|---|
| >PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A | Back alignment and domain information |
|---|
| >cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains | Back alignment and domain information |
|---|
| >KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] | Back alignment and domain information |
|---|
| >KOG4329 consensus DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription] | Back alignment and domain information |
|---|
| >KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A | Back alignment and domain information |
|---|
| >PLN03212 Transcription repressor MYB5; Provisional | Back alignment and domain information |
|---|
| >KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PLN03091 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PLN03212 Transcription repressor MYB5; Provisional | Back alignment and domain information |
|---|
| >KOG4468 consensus Polycomb-group transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
| >PLN03091 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class | Back alignment and domain information |
|---|
| >COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription] | Back alignment and domain information |
|---|
| >KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] | Back alignment and domain information |
|---|
| >KOG0048 consensus Transcription factor, Myb superfamily [Transcription] | Back alignment and domain information |
|---|
| >KOG0049 consensus Transcription factor, Myb superfamily [Transcription] | Back alignment and domain information |
|---|
| >KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG4468 consensus Polycomb-group transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
| >KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1696 | ||||
| 4a69_C | 94 | Structure Of Hdac3 Bound To Corepressor And Inosito | 4e-12 | ||
| 1xc5_A | 71 | Solution Structure Of The Smrt Deacetylase Activati | 4e-10 | ||
| 2eqr_A | 61 | Solution Structure Of The First Sant Domain From Hu | 7e-06 | ||
| 2xaf_B | 482 | Crystal Structure Of Lsd1-Corest In Complex With Pa | 3e-04 | ||
| 2iw5_B | 235 | Structural Basis For Corest-dependent Demethylation | 4e-04 | ||
| 2v1d_B | 178 | Structural Basis Of Lsd1-Corest Selectivity In Hist | 5e-04 |
| >pdb|4A69|C Chain C, Structure Of Hdac3 Bound To Corepressor And Inositol Tetraphosphate Length = 94 | Back alignment and structure |
|
| >pdb|1XC5|A Chain A, Solution Structure Of The Smrt Deacetylase Activation Domain Length = 71 | Back alignment and structure |
| >pdb|2EQR|A Chain A, Solution Structure Of The First Sant Domain From Human Nuclear Receptor Corepressor 1 Length = 61 | Back alignment and structure |
| >pdb|2XAF|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine Length = 482 | Back alignment and structure |
| >pdb|2IW5|B Chain B, Structural Basis For Corest-dependent Demethylation Of Nucleosomes By The Human Lsd1 Histone Demethylase Length = 235 | Back alignment and structure |
| >pdb|2V1D|B Chain B, Structural Basis Of Lsd1-Corest Selectivity In Histone H3 Recognition Length = 178 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 4e-32
Identities = 34/92 (36%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 681 RNSLKMPALILDKKEKMSSRFISSNGLVEDPCAVEKERAMINPWTSEEREIFVDKLATFG 740
R +P ++ D ++ +FI+ NGL+ DP V K+R ++N W+ +E+E F +K
Sbjct: 4 RQLAVIPPMLYDADQQRI-KFINMNGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHP 62
Query: 741 KDFRKIASFLNYKTTADCVEFYYKNHKSDCFE 772
K+F IASFL KT A+CV +YY K++ ++
Sbjct: 63 KNFGLIASFLERKTVAECVLYYYLTKKNENYK 94
|
| >4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94 | Back alignment and structure |
|---|
| >2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61 | Back alignment and structure |
|---|
| >2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61 | Back alignment and structure |
|---|
| >2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Length = 482 | Back alignment and structure |
|---|
| >2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Length = 482 | Back alignment and structure |
|---|
| >2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89 | Back alignment and structure |
|---|
| >2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89 | Back alignment and structure |
|---|
| >2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Length = 70 | Back alignment and structure |
|---|
| >2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Length = 70 | Back alignment and structure |
|---|
| >2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63 | Back alignment and structure |
|---|
| >2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63 | Back alignment and structure |
|---|
| >2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Length = 235 | Back alignment and structure |
|---|
| >2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Length = 235 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72 | Back alignment and structure |
|---|
| >2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72 | Back alignment and structure |
|---|
| >2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79 | Back alignment and structure |
|---|
| >2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79 | Back alignment and structure |
|---|
| >1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60 | Back alignment and structure |
|---|
| >2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
| >2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
| >2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 | Back alignment and structure |
|---|
| >2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60 | Back alignment and structure |
|---|
| >1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52 | Back alignment and structure |
|---|
| >2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73 | Back alignment and structure |
|---|
| >2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1696 | ||||
| d1xc5a1 | 68 | a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 | 5e-22 | |
| d1xc5a1 | 68 | a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 | 2e-11 | |
| d2crga1 | 57 | a.4.1.3 (A:8-64) Metastasis associated protein MTA | 2e-17 | |
| d2crga1 | 57 | a.4.1.3 (A:8-64) Metastasis associated protein MTA | 2e-09 | |
| d2iw5b1 | 65 | a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu | 1e-11 | |
| d2iw5b1 | 65 | a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu | 2e-11 | |
| d2cu7a1 | 65 | a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap | 3e-07 | |
| d2cu7a1 | 65 | a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap | 7e-07 | |
| d2cjja1 | 63 | a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti | 3e-05 | |
| d2cjja1 | 63 | a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti | 8e-04 | |
| d1gv2a2 | 47 | a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou | 6e-05 | |
| d1gv2a2 | 47 | a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou | 0.002 | |
| d1x41a1 | 47 | a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T | 7e-05 | |
| d2cqra1 | 60 | a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 | 3e-04 | |
| d2cqra1 | 60 | a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 | 6e-04 | |
| d1guua_ | 50 | a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus | 4e-04 | |
| d1gvda_ | 52 | a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus | 0.001 | |
| d1w0ta_ | 52 | a.4.1.4 (A:) DNA-binding domain of human telomeric | 0.002 |
| >d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: Homeodomain-like family: Myb/SANT domain domain: Nuclear receptor corepressor 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.2 bits (221), Expect = 5e-22
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 705 NGLVEDPCAVEKERAMINPWTSEEREIFVDKLATFGKDFRKIASFLNYKTTADCVEFYYK 764
NGL+ DP V K+R ++N W+ +E+E F +K K+F IASFL KT A+CV +YY
Sbjct: 1 NGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 60
Query: 765 NHKSDCFE 772
K++ ++
Sbjct: 61 TKKNENYK 68
|
| >d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 | Back information, alignment and structure |
|---|
| >d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57 | Back information, alignment and structure |
|---|
| >d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57 | Back information, alignment and structure |
|---|
| >d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 | Back information, alignment and structure |
|---|
| >d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 | Back information, alignment and structure |
|---|
| >d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 | Back information, alignment and structure |
|---|
| >d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 | Back information, alignment and structure |
|---|
| >d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63 | Back information, alignment and structure |
|---|
| >d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63 | Back information, alignment and structure |
|---|
| >d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47 | Back information, alignment and structure |
|---|
| >d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47 | Back information, alignment and structure |
|---|
| >d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47 | Back information, alignment and structure |
|---|
| >d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 | Back information, alignment and structure |
|---|
| >d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 | Back information, alignment and structure |
|---|
| >d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 | Back information, alignment and structure |
|---|
| >d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 | Back information, alignment and structure |
|---|
| >d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1696 | |||
| d1xc5a1 | 68 | Nuclear receptor corepressor 2 {Human (Homo sapien | 99.43 | |
| d2crga1 | 57 | Metastasis associated protein MTA3 {Mouse (Mus mus | 99.29 | |
| d2iw5b1 | 65 | REST corepressor 1, CoREST {Human (Homo sapiens) [ | 99.15 | |
| d2crga1 | 57 | Metastasis associated protein MTA3 {Mouse (Mus mus | 99.01 | |
| d1xc5a1 | 68 | Nuclear receptor corepressor 2 {Human (Homo sapien | 98.92 | |
| d2cu7a1 | 65 | MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 | 98.9 | |
| d2iw5b1 | 65 | REST corepressor 1, CoREST {Human (Homo sapiens) [ | 98.77 | |
| d1x41a1 | 47 | Transcriptional adaptor 2-like, TADA2L, isoform b | 98.54 | |
| d2cu7a1 | 65 | MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 | 98.22 | |
| d1irza_ | 64 | Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId | 98.09 | |
| d1gv2a2 | 47 | c-Myb, DNA-binding domain {Mouse (Mus musculus) [T | 98.08 | |
| d2cjja1 | 63 | Radialis {Garden snapdragon (Antirrhinum majus) [T | 98.08 | |
| d1guua_ | 50 | c-Myb, DNA-binding domain {Mouse (Mus musculus) [T | 98.07 | |
| d1gvda_ | 52 | c-Myb, DNA-binding domain {Mouse (Mus musculus) [T | 97.94 | |
| d2cqra1 | 60 | DnaJ homolog subfamily C member 1 {Human (Homo sap | 97.83 | |
| d2cjja1 | 63 | Radialis {Garden snapdragon (Antirrhinum majus) [T | 97.49 | |
| d1w0ua_ | 55 | Telomeric repeat binding factor 2, TRF2 {Human (Ho | 97.44 | |
| d2cqra1 | 60 | DnaJ homolog subfamily C member 1 {Human (Homo sap | 97.41 | |
| d1x41a1 | 47 | Transcriptional adaptor 2-like, TADA2L, isoform b | 97.38 | |
| d1w0ta_ | 52 | DNA-binding domain of human telomeric protein, hTR | 97.36 | |
| d1gv2a2 | 47 | c-Myb, DNA-binding domain {Mouse (Mus musculus) [T | 97.32 | |
| d1igna1 | 86 | DNA-binding domain of rap1 {Baker's yeast (Sacchar | 97.28 | |
| d2cqqa1 | 59 | DnaJ homolog subfamily C member 1 {Human (Homo sap | 97.14 | |
| d2cqqa1 | 59 | DnaJ homolog subfamily C member 1 {Human (Homo sap | 96.72 | |
| d2ckxa1 | 83 | Telomere binding protein TBP1 {Tobacco (Nicotiana | 96.56 | |
| d1guua_ | 50 | c-Myb, DNA-binding domain {Mouse (Mus musculus) [T | 96.47 | |
| d1gvda_ | 52 | c-Myb, DNA-binding domain {Mouse (Mus musculus) [T | 96.32 | |
| d1ug2a_ | 95 | 2610100b20rik gene product {Mouse (Mus musculus) [ | 96.29 | |
| d1ofcx1 | 52 | SANT domain of the nucleosome remodeling ATPase IS | 95.86 | |
| d1igna1 | 86 | DNA-binding domain of rap1 {Baker's yeast (Sacchar | 95.67 | |
| d1w0ta_ | 52 | DNA-binding domain of human telomeric protein, hTR | 94.7 | |
| d1w0ua_ | 55 | Telomeric repeat binding factor 2, TRF2 {Human (Ho | 94.05 | |
| d1ug2a_ | 95 | 2610100b20rik gene product {Mouse (Mus musculus) [ | 92.66 | |
| d2ckxa1 | 83 | Telomere binding protein TBP1 {Tobacco (Nicotiana | 88.55 | |
| d1ofcx1 | 52 | SANT domain of the nucleosome remodeling ATPase IS | 86.42 | |
| d1irza_ | 64 | Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId | 86.33 |
| >d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: Homeodomain-like family: Myb/SANT domain domain: Nuclear receptor corepressor 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=1.8e-14 Score=117.54 Aligned_cols=68 Identities=43% Similarity=0.798 Sum_probs=66.3
Q ss_pred CCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCHH
Q ss_conf 99876457898530369999999999999999744988778973308899667888854115675738
Q 000305 705 NGLVEDPCAVEKERAMINPWTSEEREIFVDKLATFGKDFRKIASFLNYKTTADCVEFYYKNHKSDCFE 772 (1696)
Q Consensus 705 NgLVeDP~avyKerq~in~WTEEEkeiF~EKylqhPKnFGkIAs~Lp~KTvsDCVlfYYltKKs~nYK 772 (1696)
||+|+||+.+++.+...+.||++|.++|.+++.+|||+|.+||.+|++||..+|+.|||++||..+||
T Consensus 1 ng~v~dp~~~~~~~~~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~kk~~~~K 68 (68)
T d1xc5a1 1 NGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKNENYK 68 (68)
T ss_dssp CCSSCCCCTTTTSTTTTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 97541528887364579899999999999999998876999998769979999999999987745789
|
| >d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} | Back information, alignment and structure |
|---|
| >d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} | Back information, alignment and structure |
|---|
| >d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
| >d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
| >d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|