Citrus Sinensis ID: 000332
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1651 | ||||||
| 255536725 | 1732 | homeobox protein, putative [Ricinus comm | 0.979 | 0.933 | 0.638 | 0.0 | |
| 359483496 | 1729 | PREDICTED: uncharacterized protein LOC10 | 0.985 | 0.941 | 0.602 | 0.0 | |
| 224125578 | 1423 | predicted protein [Populus trichocarpa] | 0.817 | 0.948 | 0.653 | 0.0 | |
| 224077058 | 1440 | predicted protein [Populus trichocarpa] | 0.824 | 0.945 | 0.666 | 0.0 | |
| 297740429 | 1682 | unnamed protein product [Vitis vinifera] | 0.965 | 0.947 | 0.593 | 0.0 | |
| 449479573 | 1750 | PREDICTED: uncharacterized protein LOC10 | 0.975 | 0.920 | 0.581 | 0.0 | |
| 449433800 | 1675 | PREDICTED: uncharacterized protein LOC10 | 0.975 | 0.961 | 0.581 | 0.0 | |
| 356546621 | 1755 | PREDICTED: uncharacterized protein LOC10 | 0.978 | 0.920 | 0.593 | 0.0 | |
| 357446737 | 1796 | Homeobox protein Hox-C4 [Medicago trunca | 0.956 | 0.879 | 0.571 | 0.0 | |
| 124360728 | 1795 | DDT; Homeodomain-related [Medicago trunc | 0.956 | 0.880 | 0.572 | 0.0 |
| >gi|255536725|ref|XP_002509429.1| homeobox protein, putative [Ricinus communis] gi|223549328|gb|EEF50816.1| homeobox protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1964 bits (5087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1081/1693 (63%), Positives = 1288/1693 (76%), Gaps = 76/1693 (4%)
Query: 1 MWFCHRRLKDKKEKE----NPPKKMRKNVAVVMPESPIDELRAG-AEPGSDYGSGSGSGS 55
MWFCHRRLKDK +KE P + RK AV + ESP++E+RA EPGSD GSGSGSGS
Sbjct: 74 MWFCHRRLKDKDKKEEKKETPSNRKRK--AVHLSESPVEEMRAIIPEPGSDDGSGSGSGS 131
Query: 56 SPYLMELRNAVGSSRGLMDDMPIVRRSYESQ-QSIMELRAIACVEAQLGEPLREDGPILG 114
SP+ M+ R V + D+P+ RR YES QS+MELRAIACVEAQLGEPLR+DGPILG
Sbjct: 132 SPF-MDPRKVVSA------DVPMNRRYYESSPQSVMELRAIACVEAQLGEPLRDDGPILG 184
Query: 115 MEFDSLPPDAFGAPIGSSEQQKRSGHPYESKIYDRYDTKSNKVIPRAHHEYQSLSDQ--- 171
MEFD LPPDAFG PI EQQKRS H Y+ K+Y+R++TKS+K R HEYQ L DQ
Sbjct: 185 MEFDPLPPDAFGEPISMVEQQKRSAHSYDGKVYERHNTKSSKAFARVFHEYQFLPDQSSI 244
Query: 172 -----------PYFHGSPIDGSRARTSFLHANEPSSRVHGVQGHVARVRVLSQQDKPAHI 220
PY H SP+D R R S + +EP SR HGVQG +RVR+ SQ +K H+
Sbjct: 245 RSDAYGQVAQSPY-HDSPVDNLRGRASLVLGDEPLSRGHGVQG--SRVRLFSQPEKKGHV 301
Query: 221 FSSPNGGEDSLLQRESTSNNRKNAQSTSHPIFGTEDPYLLSDGQTFNNDAEQRMEKKRKC 280
FSSP +D LLQ +S +NNR +AQ++SHPI G+E+P SD Q + + + MEKKRK
Sbjct: 302 FSSPRRDDDYLLQHDSYTNNRISAQTSSHPIMGSENPDGFSDAQILHTETDVWMEKKRKI 361
Query: 281 DEARIAREVEANEIRIQKELERQDNLRRKNEERMRKEMEKHERERRKEEERLMRERQREE 340
DEAR R+ EANE RI+KELE++D LRRKNEER++K+ME+ +RERRKEEERLMRERQREE
Sbjct: 362 DEARTVRDPEANEYRIRKELEKKDQLRRKNEERIKKDMERQDRERRKEEERLMRERQREE 421
Query: 341 ERSLREQKREMERREKFLQKEYLRAEKRRLKEELRMEKQAAKRKVAIEKATARKMAKESM 400
ERSLREQKRE+ERREKFLQKEYLRAEK R KEELR EK+A KR+ AIEKATAR++AKES+
Sbjct: 422 ERSLREQKRELERREKFLQKEYLRAEKMRQKEELRKEKEAVKRQAAIEKATARRIAKESL 481
Query: 401 DLIEDEQLELMDLAAASKGLSSIIHLDLETLQNLDSFRDSLSVFPPKTVRLKRPFSVQPW 460
DLIEDEQLELM++A ASKGL+SI+HL+ + LQ+L+SFRDSLS+FPP++V+L +PF++QPW
Sbjct: 482 DLIEDEQLELMEIAVASKGLASIVHLNYDALQSLESFRDSLSMFPPQSVQLTKPFAIQPW 541
Query: 461 SDSEENVGNLLMVWRFFITFADVLGLWPFTLDEFVQAFHDHESRLLGEIHLALLKSIIKD 520
DSEEN+GNLLMVWRFFITFADV+GLWPFTLDEFVQAFHD++SRLLGE+H++LL+ IIKD
Sbjct: 542 MDSEENIGNLLMVWRFFITFADVIGLWPFTLDEFVQAFHDYDSRLLGEVHVSLLRLIIKD 601
Query: 521 IEDVARTPSTGLGMNQYCAANPEGGHPRIIEGAYAWGFDIRNWQQLLNPLTWHEIFRQLA 580
IEDVARTPS GLG NQY ANPEGGHP+I+EGAY WGFDIRNWQ+ LNP+TW EIFRQLA
Sbjct: 602 IEDVARTPSIGLGTNQYSPANPEGGHPQIVEGAYMWGFDIRNWQRHLNPVTWPEIFRQLA 661
Query: 581 LSAGFGPKLKKRSSKWANVGDNHEGKGCEDIVSTIRNGSAAENAFAWMREKGLLLPRRSR 640
LSAGFGP+LKK+ + W +GDN E KGCED +ST+RNGSAAENAFA MRE+GLLLPRRSR
Sbjct: 662 LSAGFGPRLKKKGTAWTYLGDNDEVKGCEDTISTLRNGSAAENAFALMRERGLLLPRRSR 721
Query: 641 HKLTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISVALTRDTK 700
H+LTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISVALTRD K
Sbjct: 722 HRLTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISVALTRDQK 781
Query: 701 LFERIAPSTYCVRPAFRKDPADAEAILAAARKKIRIFENGFLGGEDADDVERDEDSECDV 760
LFERIAPSTYC+R A+RKDPADAEAIL+AARKKIRIFENGFLGG+DADDVERDE+SE DV
Sbjct: 782 LFERIAPSTYCLRAAYRKDPADAEAILSAARKKIRIFENGFLGGDDADDVERDEESEGDV 841
Query: 761 EEDPEVEDLATPSSANKNIDRYDEANTCLVSGKDNACNDVALSVQNEVDKGFSSFSLNDS 820
EEDPEV+DLATP +ANK+ +EANTC SGKDN C+ V LS++NE+ K SS N
Sbjct: 842 EEDPEVDDLATPLTANKSAVHSNEANTCSGSGKDNVCSGVPLSIKNELVKEPSSVPSNGL 901
Query: 821 KDARCQGTADNYVAVEDFGASHLNQENIEIDESKPGESWIQGLAEGDYSHLSVEERLNAL 880
KDA+ +D A+++++ENIEIDESK GESWIQGLAE +Y+HLSVEERLNAL
Sbjct: 902 KDAKTPSI--EQCVAQDVVAANIDEENIEIDESKSGESWIQGLAEAEYAHLSVEERLNAL 959
Query: 881 VALIGIANEGNSIRAVLEDRLEAANALKKQMWAEAQLDKSRLKEENITKLDFTPAMGSKA 940
VAL+GIANEGN+IR+VLEDRLEAANALKKQMWAEAQLD+SRLKE+ ++KLDF+ ++G +A
Sbjct: 960 VALVGIANEGNTIRSVLEDRLEAANALKKQMWAEAQLDRSRLKEDIMSKLDFSSSIGVRA 1019
Query: 941 ETHLASSAAEGGQSPLPVFVDNKN-EASPSLAEDQKPMFGSQVFQNHLSEFPNERTVAVQ 999
E +ASSA EG QSPL + VD+K+ EASPS EDQK + S+ P E+ + VQ
Sbjct: 1020 ELQVASSAVEGSQSPL-LLVDSKSKEASPSTGEDQKSLLASE-------SVPTEKQLVVQ 1071
Query: 1000 DPSTGLDNLATQQHGYASKRSRSQLKAYIAHMAEEMYVYRSLPLGQDRRRNRYWQFATSA 1059
DPS+ DN ++QQHGY SKRSRSQLKAYI H+AEE YVYRSLPLGQDRRRNRYWQF SA
Sbjct: 1072 DPSSNPDNFSSQQHGYGSKRSRSQLKAYIGHIAEETYVYRSLPLGQDRRRNRYWQFVASA 1131
Query: 1060 SRNDPCSGRIFVELHDGTWRLIDTVEAFDALLSSLDARGTRESHLRIMLQKIETSFKDKV 1119
S+NDPCSG IFVELHDG WRLID+ EAFDALLSSLD RG RESHLRIMLQK+E SFKD +
Sbjct: 1132 SKNDPCSGWIFVELHDGNWRLIDSEEAFDALLSSLDTRGVRESHLRIMLQKVEKSFKDNI 1191
Query: 1120 RRNLQGIDTVGQSWTAIKNEAAEMDVDPDF-ASSDSPSSTVCGLNSDTLETSSSFRIELG 1178
RRNL T + EA E D A SP+S VCG N DT TSS FRIELG
Sbjct: 1192 RRNLHSRATA-------ETEACEADSSSICSAGYGSPTSMVCGSNLDTSNTSSLFRIELG 1244
Query: 1179 RNEIEKKAALERFQDFQWWMWRECFNSLSLCASKNEKTRCRQLLVICDVCLDSYLCEDAH 1238
RNE+EKK AL+R+QDFQ WMW+ECFNSL+LCA K K RC QLL C+ C DSYL ED H
Sbjct: 1245 RNEMEKKGALKRYQDFQKWMWKECFNSLTLCAMKYGKKRCIQLLATCEWCFDSYLAEDTH 1304
Query: 1239 CPSCHRTFGAVDKSSKFSEHSIQCEEKTKLGLRDIHVSDSSLPLGIRLLKPLSAVIEAYI 1298
C SCH+TF +KS EH +QC++KTKL D V DSSLP GIR LK L ++IE +
Sbjct: 1305 CLSCHQTFSTANKSFNIFEHEVQCKDKTKL---DHGVCDSSLPPGIRSLKALLSLIEVSV 1361
Query: 1299 PPEALEASWTDERRKTWGMKLNMSSSAEEVLQLLTILESGIKRSYLSSNFETTKELLGSS 1358
P EALE+ WT+ RKTW MKLN SSS EE+LQ+LT+LES IKR LS+NFE TKE G S
Sbjct: 1362 PAEALESFWTENHRKTWAMKLNKSSSTEELLQMLTVLESAIKRDCLSANFEMTKEFSGGS 1421
Query: 1359 FTC-------ADPWSVPILPWIPKTTAAVALRLLELDASIMYVKPEKPEQFEEDKEANER 1411
AD SVP+LPWIPKTTAAVALRL +LDASI Y++ EK E E+
Sbjct: 1422 ILSHSALHSRADLRSVPVLPWIPKTTAAVALRLFDLDASIAYIQREKAEPSEDKPIKLFM 1481
Query: 1412 VIPSRYLPLKNKEVVLKELDQDRLVKEENYSNLAGKRKNYRR-GKGNRDHGWSRKYHKKT 1470
+PSRY PLKNKEV LKEL Q+ VKE+ ++++ KR + +R G+G D G+ K K+
Sbjct: 1482 KLPSRYSPLKNKEVELKELKQEH-VKEDRFTDVRNKRNSCKRGGRGGSDQGYGTKSRKRV 1540
Query: 1471 PSITADVGRRTAREHEGLNLRLKQQGLRTNGR-----GRRTVRKRADRTSKNETFQGQMG 1525
P I ++ RR A E LN+ +QQG RT + R ++RA+ ET ++
Sbjct: 1541 PGIKSNANRRNAGEIGKLNMGPRQQGRRTTAQLSGRGRRTVRKRRAEVMVAEETLINRLS 1600
Query: 1526 HMVIPDSSSGLHRNLDEEEWGVGKERMINMEDAENSNSAEAVDSDDNVQAVEYEQGNWEV 1585
V+P S G R+L EE+WG K M +++DA+NSNS EA +SDDNV+A E+EQGNWE
Sbjct: 1601 DTVVPRSYGGSLRSLAEEDWGDEKIGM-DVDDADNSNSVEAAESDDNVEAEEFEQGNWEQ 1659
Query: 1586 GFNGATNGWNRDVMEVSDEDEDAFGDDAGIEEAVDEYSEGNIDMSEAS----DQNGI--D 1639
F+ NGWNR+ +E+SD+D DA GDD IE+A E SE +ID SE S + N + D
Sbjct: 1660 SFSRGFNGWNRNSIEMSDDDGDASGDDNVIEDAGVEDSEEDIDTSEGSGRVPNNNKMEND 1719
Query: 1640 DGVDSAAS-EYSD 1651
+G DS AS +YS+
Sbjct: 1720 EGTDSEASDDYSE 1732
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483496|ref|XP_002273559.2| PREDICTED: uncharacterized protein LOC100247033 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224125578|ref|XP_002329839.1| predicted protein [Populus trichocarpa] gi|222870901|gb|EEF08032.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224077058|ref|XP_002305113.1| predicted protein [Populus trichocarpa] gi|222848077|gb|EEE85624.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|297740429|emb|CBI30611.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449479573|ref|XP_004155639.1| PREDICTED: uncharacterized protein LOC101230914 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449433800|ref|XP_004134685.1| PREDICTED: uncharacterized protein LOC101220962 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356546621|ref|XP_003541723.1| PREDICTED: uncharacterized protein LOC100777465 [Glycine max] | Back alignment and taxonomy information |
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| >gi|357446737|ref|XP_003593644.1| Homeobox protein Hox-C4 [Medicago truncatula] gi|355482692|gb|AES63895.1| Homeobox protein Hox-C4 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|124360728|gb|ABN08705.1| DDT; Homeodomain-related [Medicago truncatula] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1651 | ||||||
| TAIR|locus:2032505 | 1705 | HB-1 "homeobox-1" [Arabidopsis | 0.353 | 0.341 | 0.626 | 1.9e-288 | |
| TAIR|locus:2167628 | 1694 | RLT2 "RINGLET 2" [Arabidopsis | 0.341 | 0.332 | 0.547 | 2e-247 | |
| TAIR|locus:2159537 | 723 | AT5G08630 "AT5G08630" [Arabido | 0.141 | 0.322 | 0.259 | 5.1e-12 | |
| DICTYBASE|DDB_G0282237 | 885 | DDB_G0282237 "DDT domain-conta | 0.049 | 0.092 | 0.349 | 1e-09 | |
| MGI|MGI:1353499 | 1479 | Baz1b "bromodomain adjacent to | 0.121 | 0.135 | 0.230 | 0.00071 | |
| UNIPROTKB|J9P3J2 | 1392 | BAZ1B "Uncharacterized protein | 0.121 | 0.143 | 0.230 | 0.00084 | |
| UNIPROTKB|E2RED7 | 1482 | BAZ1B "Uncharacterized protein | 0.121 | 0.134 | 0.230 | 0.00096 | |
| UNIPROTKB|J9PAU7 | 1485 | BAZ1B "Uncharacterized protein | 0.121 | 0.134 | 0.230 | 0.00096 |
| TAIR|locus:2032505 HB-1 "homeobox-1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1816 (644.3 bits), Expect = 1.9e-288, Sum P(4) = 1.9e-288
Identities = 375/599 (62%), Positives = 441/599 (73%)
Query: 380 AAKRKVAIEKATARKMAKESMDLIEDEQLELMDLAAASKGLSSIIHLDLETLQNLDSFRD 439
A +RK+AIEKATAR++AKESMDLIEDEQLELM+LAA SKGL S++ LD +TLQNL+ +RD
Sbjct: 465 AIRRKLAIEKATARRIAKESMDLIEDEQLELMELAAISKGLPSVLQLDHDTLQNLEVYRD 524
Query: 440 SLSVFPPKTVRLKRPFSVQPWSDSEENVGNLLMVWRFFITFADVLGLWPFTLDEFVQAFH 499
SLS FPPK+++LK PF++ PW DS+E VGNLLMVWRF I+F+DVL LWPFTLDEF+QAFH
Sbjct: 525 SLSTFPPKSLQLKMPFAISPWKDSDETVGNLLMVWRFLISFSDVLDLWPFTLDEFIQAFH 584
Query: 500 DHESRLLGEIHLALLKSIIKDIEDVARTPSTGLGMNQYCAANPEGGHPRIIEGAYAWGFD 559
D++SRLLGEIH+ LL+SII+D+EDVARTP +G+G NQY ANPEGGHP+I+EGAYAWGFD
Sbjct: 585 DYDSRLLGEIHVTLLRSIIRDVEDVARTPFSGIGNNQYTTANPEGGHPQIVEGAYAWGFD 644
Query: 560 IRNWQQLLNPLTWHEIFRQLALSAGFGPKLKKRSSKWANVGDNHEGKGCEDIVSTIRNGS 619
IR+W++ LNPLTW EI RQLALSAGFGPKLKK+ S+ N GD E KGCED++STIRNG+
Sbjct: 645 IRSWKKHLNPLTWPEILRQLALSAGFGPKLKKKHSRLTNTGDKDEAKGCEDVISTIRNGT 704
Query: 620 AAENAFAWMREKGLLLPRRSRHKLTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLR 679
AAE+AFA MREKGLL PR+SRH+LTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLR
Sbjct: 705 AAESAFASMREKGLLAPRKSRHRLTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLR 764
Query: 680 DLTTSKTPEASISVALTRDTKLFERIAPSTYCVRPAFRKDPXXXXXXXXXXRKKIRIFEN 739
DLTTSKTPEASISVALTRD KLFERIAPSTYCVR + KDP RKKIR FEN
Sbjct: 765 DLTTSKTPEASISVALTRDVKLFERIAPSTYCVRAPYVKDPKDGEAILADARKKIRAFEN 824
Query: 740 GFLGGEDAXXXXXXXXXXXXXXXXXXXXXLATPSSANKNIDRYDEANTCLVSGKDNACND 799
GF G ED LAT +SA+K+ EAN G D D
Sbjct: 825 GFTGPEDVNDLERDEDFEIDIDEDPEVDDLATLASASKSAV-LGEANVLSGKGVDTMFCD 883
Query: 800 VALSVQNEVDKGFSSFSLNDSKDARCQGTADNYVAVEDFGASHLNQENIEIDESKPGESW 859
V V++E++K FSS + K Q + + V G + IDES G+SW
Sbjct: 884 VKADVKSELEKEFSSPPPSTMKSIVPQHSERHKNTVVG-GVDAV------IDESNQGQSW 936
Query: 860 IQGLAEGDYSHLSVEERLNALVALIGIANEGNSIRAVLEDRLEAANALKKQMWAEAQLDK 919
IQGL EGDY HLSVEERLNALVAL+GIANEGNSIR LEDR+EAANALKKQMWAEAQLD
Sbjct: 937 IQGLTEGDYCHLSVEERLNALVALVGIANEGNSIRTGLEDRMEAANALKKQMWAEAQLDN 996
Query: 920 SRLKEENITKLDFTPAMGSKAETHLASSAAEGGQSPLPVFVDNKNEASPS-LAEDQKPM 977
S +++ + KLD SK E+ + + F + PS L ++ KP+
Sbjct: 997 SCMRD--VLKLDLQNLASSKTESTIGLPIIQSSTRERDSF-----DRDPSQLLDETKPL 1048
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| TAIR|locus:2167628 RLT2 "RINGLET 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2159537 AT5G08630 "AT5G08630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0282237 DDB_G0282237 "DDT domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| MGI|MGI:1353499 Baz1b "bromodomain adjacent to zinc finger domain, 1B" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|J9P3J2 BAZ1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2RED7 BAZ1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|J9PAU7 BAZ1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1651 | |||
| pfam02791 | 61 | pfam02791, DDT, DDT domain | 2e-23 | |
| smart00571 | 63 | smart00571, DDT, domain in different transcription | 1e-16 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-10 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 5e-09 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 7e-09 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 8e-08 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 9e-08 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 1e-07 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-07 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-07 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-07 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 4e-07 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 5e-07 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 2e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-06 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 3e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-06 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 4e-06 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 7e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 1e-05 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 1e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-05 | |
| pfam02841 | 297 | pfam02841, GBP_C, Guanylate-binding protein, C-ter | 2e-05 | |
| TIGR03319 | 514 | TIGR03319, RNase_Y, ribonuclease Y | 2e-05 | |
| pfam12474 | 142 | pfam12474, PKK, Polo kinase kinase | 3e-05 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 4e-05 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 4e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 5e-05 | |
| pfam12037 | 276 | pfam12037, DUF3523, Domain of unknown function (DU | 5e-05 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 6e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 7e-05 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 8e-05 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 9e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 1e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 2e-04 | |
| COG2433 | 652 | COG2433, COG2433, Uncharacterized conserved protei | 2e-04 | |
| TIGR00570 | 309 | TIGR00570, cdk7, CDK-activating kinase assembly fa | 2e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-04 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 3e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 3e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-04 | |
| pfam12072 | 201 | pfam12072, DUF3552, Domain of unknown function (DU | 4e-04 | |
| PRK00409 | 782 | PRK00409, PRK00409, recombination and DNA strand e | 4e-04 | |
| pfam09726 | 680 | pfam09726, Macoilin, Transmembrane protein | 4e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 5e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 5e-04 | |
| COG0711 | 161 | COG0711, AtpF, F0F1-type ATP synthase, subunit b [ | 5e-04 | |
| pfam09756 | 189 | pfam09756, DDRGK, DDRGK domain | 5e-04 | |
| pfam02841 | 297 | pfam02841, GBP_C, Guanylate-binding protein, C-ter | 6e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 7e-04 | |
| pfam07946 | 322 | pfam07946, DUF1682, Protein of unknown function (D | 7e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 8e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 8e-04 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 8e-04 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 8e-04 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 9e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 9e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.001 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 0.001 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.001 | |
| pfam02841 | 297 | pfam02841, GBP_C, Guanylate-binding protein, C-ter | 0.001 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 0.001 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 0.001 | |
| pfam12037 | 276 | pfam12037, DUF3523, Domain of unknown function (DU | 0.001 | |
| COG2433 | 652 | COG2433, COG2433, Uncharacterized conserved protei | 0.001 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 0.001 | |
| COG1842 | 225 | COG1842, PspA, Phage shock protein A (IM30), suppr | 0.001 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 0.001 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 0.001 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 0.001 | |
| COG2268 | 548 | COG2268, COG2268, Uncharacterized protein conserve | 0.001 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.002 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.002 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.002 | |
| pfam09756 | 189 | pfam09756, DDRGK, DDRGK domain | 0.002 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 0.002 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 0.002 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 0.002 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 0.002 | |
| pfam00769 | 244 | pfam00769, ERM, Ezrin/radixin/moesin family | 0.002 | |
| pfam06658 | 142 | pfam06658, DUF1168, Protein of unknown function (D | 0.002 | |
| pfam05262 | 489 | pfam05262, Borrelia_P83, Borrelia P83/100 protein | 0.002 | |
| pfam13904 | 261 | pfam13904, DUF4207, Domain of unknown function (DU | 0.002 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.003 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.003 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 0.003 | |
| TIGR03319 | 514 | TIGR03319, RNase_Y, ribonuclease Y | 0.003 | |
| pfam12474 | 142 | pfam12474, PKK, Polo kinase kinase | 0.003 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 0.003 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.003 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 0.003 | |
| PRK05035 | 695 | PRK05035, PRK05035, electron transport complex pro | 0.003 | |
| COG4487 | 438 | COG4487, COG4487, Uncharacterized protein conserve | 0.003 | |
| pfam13863 | 126 | pfam13863, DUF4200, Domain of unknown function (DU | 0.003 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.004 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 0.004 | |
| pfam12037 | 276 | pfam12037, DUF3523, Domain of unknown function (DU | 0.004 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.004 | |
| pfam13863 | 126 | pfam13863, DUF4200, Domain of unknown function (DU | 0.004 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 0.004 |
| >gnl|CDD|202398 pfam02791, DDT, DDT domain | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 2e-23
Identities = 34/61 (55%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 464 EENVGNLLMVWRFFITFADVLGLWPFTLDEFVQAFHDHESR-LLGEIHLALLKSIIKDIE 522
E G+LLMVW F TF +VLGL PFTLD+F +A +S LLGE+H+ALLK ++ D E
Sbjct: 1 GEAFGDLLMVWEFLNTFGEVLGLSPFTLDDFEEALLCTDSEELLGEVHIALLKLLVADEE 60
Query: 523 D 523
D
Sbjct: 61 D 61
|
This domain is approximately 60 residues in length, and is predicted to be a DNA binding domain. The DDT domain is named after (DNA binding homeobox and Different Transcription factors). It is exclusively associated with nuclear domains, and is thought to be arranged into three alpha helices. Length = 61 |
| >gnl|CDD|214726 smart00571, DDT, domain in different transcription and chromosome remodeling factors | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y | Back alignment and domain information |
|---|
| >gnl|CDD|204935 pfam12474, PKK, Polo kinase kinase | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523) | Back alignment and domain information |
|---|
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1 | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552) | Back alignment and domain information |
|---|
| >gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain | Back alignment and domain information |
|---|
| >gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682) | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523) | Back alignment and domain information |
|---|
| >gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
| >gnl|CDD|224755 COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family | Back alignment and domain information |
|---|
| >gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168) | Back alignment and domain information |
|---|
| >gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein | Back alignment and domain information |
|---|
| >gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207) | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y | Back alignment and domain information |
|---|
| >gnl|CDD|204935 pfam12474, PKK, Polo kinase kinase | Back alignment and domain information |
|---|
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200) | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523) | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200) | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1651 | |||
| KOG1473 | 1414 | consensus Nucleosome remodeling factor, subunit NU | 100.0 | |
| PF02791 | 61 | DDT: DDT domain; InterPro: IPR004022 This domain i | 99.34 | |
| smart00571 | 63 | DDT domain in different transcription and chromoso | 99.3 | |
| KOG1245 | 1404 | consensus Chromatin remodeling complex WSTF-ISWI, | 99.01 | |
| PF15613 | 38 | WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2 | 98.96 | |
| PF11600 | 216 | CAF-1_p150: Chromatin assembly factor 1 complex p1 | 98.72 | |
| PF15614 | 46 | WHIM3: WSTF, HB1, Itc1p, MBD9 motif 3 | 98.68 | |
| PF05066 | 72 | HARE-HTH: HB1, ASXL, restriction endonuclease HTH | 98.35 | |
| PTZ00121 | 2084 | MAEBL; Provisional | 98.28 | |
| PTZ00121 | 2084 | MAEBL; Provisional | 98.24 | |
| KOG4364 | 811 | consensus Chromatin assembly factor-I [Chromatin s | 98.2 | |
| PF15612 | 50 | WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B | 98.19 | |
| PTZ00266 | 1021 | NIMA-related protein kinase; Provisional | 98.14 | |
| PF11600 | 216 | CAF-1_p150: Chromatin assembly factor 1 complex p1 | 98.06 | |
| KOG4364 | 811 | consensus Chromatin assembly factor-I [Chromatin s | 97.97 | |
| PTZ00266 | 1021 | NIMA-related protein kinase; Provisional | 97.95 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 97.93 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 97.82 | |
| KOG2891 | 445 | consensus Surface glycoprotein [General function p | 97.73 | |
| PF05672 | 171 | MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 | 97.43 | |
| KOG2891 | 445 | consensus Surface glycoprotein [General function p | 97.04 | |
| PRK09510 | 387 | tolA cell envelope integrity inner membrane protei | 96.78 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 96.43 | |
| PF05262 | 489 | Borrelia_P83: Borrelia P83/100 protein; InterPro: | 96.38 | |
| KOG0163 | 1259 | consensus Myosin class VI heavy chain [Cytoskeleto | 95.78 | |
| PF15236 | 157 | CCDC66: Coiled-coil domain-containing protein 66 | 95.54 | |
| KOG2072 | 988 | consensus Translation initiation factor 3, subunit | 95.51 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 95.47 | |
| COG3064 | 387 | TolA Membrane protein involved in colicin uptake [ | 95.37 | |
| KOG0163 | 1259 | consensus Myosin class VI heavy chain [Cytoskeleto | 95.22 | |
| PF05672 | 171 | MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 | 95.07 | |
| KOG3054 | 299 | consensus Uncharacterized conserved protein [Funct | 95.05 | |
| KOG2412 | 591 | consensus Nuclear-export-signal (NES)-containing p | 95.05 | |
| COG3064 | 387 | TolA Membrane protein involved in colicin uptake [ | 95.0 | |
| PF13904 | 264 | DUF4207: Domain of unknown function (DUF4207) | 94.7 | |
| KOG2412 | 591 | consensus Nuclear-export-signal (NES)-containing p | 94.65 | |
| PF13904 | 264 | DUF4207: Domain of unknown function (DUF4207) | 93.9 | |
| PRK12704 | 520 | phosphodiesterase; Provisional | 91.16 | |
| KOG0579 | 1187 | consensus Ste20-like serine/threonine protein kina | 90.67 | |
| KOG0742 | 630 | consensus AAA+-type ATPase [Posttranslational modi | 90.24 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 89.24 | |
| PRK00106 | 535 | hypothetical protein; Provisional | 88.91 | |
| TIGR03319 | 514 | YmdA_YtgF conserved hypothetical protein YmdA/YtgF | 88.64 | |
| PRK12704 | 520 | phosphodiesterase; Provisional | 88.57 | |
| KOG4848 | 225 | consensus Extracellular matrix-associated peroxida | 88.3 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 88.29 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 88.04 | |
| KOG3654 | 708 | consensus Uncharacterized CH domain protein [Cytos | 87.78 | |
| PRK00106 | 535 | hypothetical protein; Provisional | 86.71 | |
| PF07946 | 321 | DUF1682: Protein of unknown function (DUF1682); In | 86.44 | |
| KOG0742 | 630 | consensus AAA+-type ATPase [Posttranslational modi | 86.31 | |
| PF10147 | 217 | CR6_interact: Growth arrest and DNA-damage-inducib | 85.12 | |
| PF00769 | 246 | ERM: Ezrin/radixin/moesin family; InterPro: IPR011 | 83.45 | |
| PF09756 | 188 | DDRGK: DDRGK domain; InterPro: IPR019153 This is a | 82.07 | |
| KOG3654 | 708 | consensus Uncharacterized CH domain protein [Cytos | 81.37 | |
| KOG0579 | 1187 | consensus Ste20-like serine/threonine protein kina | 81.19 |
| >KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-33 Score=338.94 Aligned_cols=276 Identities=13% Similarity=0.086 Sum_probs=199.3
Q ss_pred cccccCCCccCCCCceeeeccCCCCCCCCCceeEEEecCc--cEEEeCCHHHHHHHHHhcCcCchhHHHHHHHHHHHHHH
Q 000332 1037 VYRSLPLGQDRRRNRYWQFATSASRNDPCSGRIFVELHDG--TWRLIDTVEAFDALLSSLDARGTRESHLRIMLQKIETS 1114 (1651)
Q Consensus 1037 ~~R~~pLG~DR~~NRYW~F~~~~s~~d~g~grlfVE~~dg--~W~~ydt~eeLd~Ll~~Ld~rG~RE~~L~~~L~k~~~~ 1114 (1651)
.+|+.|+|.||+.+.|||+ ..||+||+.|+ .| ||+|.-+|..||..||. -+=|+.|...|....+.
T Consensus 409 ~iR~~~iG~dr~gr~ywfi----------~rrl~Ie~~det~l~-yysT~pqly~ll~cLd~-~~~e~~L~d~i~~~~ee 476 (1414)
T KOG1473|consen 409 SIRHTPIGRDRYGRKYWFI----------SRRLRIEGMDETLLW-YYSTCPQLYHLLRCLDR-TYVEMYLCDGIWERREE 476 (1414)
T ss_pred ceeccCCCcCccccchhce----------eeeeEEecCCCcEEE-EecCcHHHHHHHHHhch-HHHHHhhccchhhhHHH
Confidence 3699999999999999999 67999999888 77 99999999999999984 34688888888875555
Q ss_pred HHHHHHhhhccccccccchh--h--hhhhcccccCCCCC-----------CCCCCCCCCccCCCCCcccCccchhhhccc
Q 000332 1115 FKDKVRRNLQGIDTVGQSWT--A--IKNEAAEMDVDPDF-----------ASSDSPSSTVCGLNSDTLETSSSFRIELGR 1179 (1651)
Q Consensus 1115 i~~~m~kr~~~~~~~~~~~~--~--~~n~~~e~~~~~~~-----------~~~~sp~s~~~~~~~d~~~~s~s~~iElgr 1179 (1651)
|.. +|..|.....+.+ . -+.-.....+.-+| .+..=|-+.|.++. +...++-+-+++- =
T Consensus 477 ~~r----qM~lT~~ltne~R~~~~f~~~~h~r~~l~~~c~~~lv~~iq~~~da~l~e~~l~~i~-k~v~~~~S~s~~~-e 550 (1414)
T KOG1473|consen 477 IIR----QMGLTEELTNELRGAVDFGEDPHGRLFLGRDCAVLLVLCIQVVEDAILKEENLGDID-KVVLVLISASAHQ-E 550 (1414)
T ss_pred HHH----hccchhhhhhhhhcccccccCCCcceeeecchhhHHhhhhhhhhhhhhhHhhhcchH-hhhhhhhhcccch-H
Confidence 544 4444332221211 0 00000000000000 00000111111111 1111111111111 1
Q ss_pred chHHHHHHHHhHHHHHHHHHhhhcccccchhhccchhhhccccccchhhhcccccccCCCCccccccCCCCCCccccchh
Q 000332 1180 NEIEKKAALERFQDFQWWMWRECFNSLSLCASKNEKTRCRQLLVICDVCLDSYLCEDAHCPSCHRTFGAVDKSSKFSEHS 1259 (1651)
Q Consensus 1180 ~~~E~~~~~~R~q~f~kWmw~~~~~~~~l~a~k~GkKr~~~~l~~C~~c~~~y~~~e~hc~~CH~tf~~~dl~~~fs~h~ 1259 (1651)
.-.|...+.++|++.+ --|..+.+. .++.++++.| .+.+++.......+.+..++.-| +.++|++|+
T Consensus 551 E~~e~ck~is~~~d~p--~~n~~~~~e--~~~dqtf~~y--~ys~n~vse~~~~d~e~~dkk~~-------~~tkf~l~~ 617 (1414)
T KOG1473|consen 551 EYVEICKAISQYWDLP--EGNLWRLRE--EGNDQTFMKY--YYSGNEVSEIFLTDSENADKKSH-------MQTKFALIT 617 (1414)
T ss_pred HHHHHHHHHhhccccc--ccchhhhhh--cccccchhhh--cccCCchhhccCCchhhhccccc-------ccceecccc
Confidence 2345588899999998 777777777 8999999999 89999999999999999999999 789999999
Q ss_pred hhhhhhhhcCccccccCCCcchhHHHHHHHHHHHHHhcCChhhhhhhhhhhhhHHHHHhhcccCCHHHHHHHHHHHHhhh
Q 000332 1260 IQCEEKTKLGLRDIHVSDSSLPLGIRLLKPLSAVIEAYIPPEALEASWTDERRKTWGMKLNMSSSAEEVLQLLTILESGI 1339 (1651)
Q Consensus 1260 a~ce~K~~~~~~~~~~~~~~lp~~lr~LK~~L~~iEasiP~eAL~~~W~~~~RK~W~~~l~~ass~~EllqvL~~le~aI 1339 (1651)
+ ..++|.++--+++.. ...+.++..+|...++.||.++++..|... -|.|...|+.|.++.+|.-+|..+..++
T Consensus 618 n-sd~~~~g~~~t~gt~----~~~~~~~~~t~~~~lSniP~s~~n~~w~~~-tkg~~lavs~A~~~~el~s~t~~~d~s~ 691 (1414)
T KOG1473|consen 618 N-SDGVTAGNVTTYGTG----SQHKKLIARTLQQGLSNIPISYNNRKWPVY-TKGFELAVSAAADLAELSSETLEPDLSK 691 (1414)
T ss_pred c-ccceeccccccccch----hhcchHHHhhhhhhhccCchHhhhccchhh-ccchhhhhhccchHHHHHHhhcccchhh
Confidence 9 889888763355554 678889999999999999999999999887 9999999999999999999999999999
Q ss_pred cccccccccc
Q 000332 1340 KRSYLSSNFE 1349 (1651)
Q Consensus 1340 k~d~L~~~~~ 1349 (1651)
+..-..+.|+
T Consensus 692 ~~~~~~~~ss 701 (1414)
T KOG1473|consen 692 RSNAFKAASS 701 (1414)
T ss_pred hhhhhccchh
Confidence 9887777666
|
|
| >PF02791 DDT: DDT domain; InterPro: IPR004022 This domain is predicted to be a DNA binding domain | Back alignment and domain information |
|---|
| >smart00571 DDT domain in different transcription and chromosome remodeling factors | Back alignment and domain information |
|---|
| >KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PF15613 WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2 | Back alignment and domain information |
|---|
| >PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [] | Back alignment and domain information |
|---|
| >PF15614 WHIM3: WSTF, HB1, Itc1p, MBD9 motif 3 | Back alignment and domain information |
|---|
| >PF05066 HARE-HTH: HB1, ASXL, restriction endonuclease HTH domain; InterPro: IPR007759 DNA-directed RNA polymerases 2 | Back alignment and domain information |
|---|
| >PTZ00121 MAEBL; Provisional | Back alignment and domain information |
|---|
| >PTZ00121 MAEBL; Provisional | Back alignment and domain information |
|---|
| >KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PF15612 WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B 2Y9Y_B | Back alignment and domain information |
|---|
| >PTZ00266 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
| >PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [] | Back alignment and domain information |
|---|
| >KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PTZ00266 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2891 consensus Surface glycoprotein [General function prediction only] | Back alignment and domain information |
|---|
| >PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs) | Back alignment and domain information |
|---|
| >KOG2891 consensus Surface glycoprotein [General function prediction only] | Back alignment and domain information |
|---|
| >PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins | Back alignment and domain information |
|---|
| >KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF15236 CCDC66: Coiled-coil domain-containing protein 66 | Back alignment and domain information |
|---|
| >KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs) | Back alignment and domain information |
|---|
| >KOG3054 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >PF13904 DUF4207: Domain of unknown function (DUF4207) | Back alignment and domain information |
|---|
| >KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF13904 DUF4207: Domain of unknown function (DUF4207) | Back alignment and domain information |
|---|
| >PRK12704 phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK00106 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF | Back alignment and domain information |
|---|
| >PRK12704 phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms] | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >PRK00106 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases | Back alignment and domain information |
|---|
| >PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] | Back alignment and domain information |
|---|
| >PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues | Back alignment and domain information |
|---|
| >KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 94.1 bits (233), Expect = 3e-19
Identities = 103/651 (15%), Positives = 193/651 (29%), Gaps = 189/651 (29%)
Query: 956 LPVFVDN--KNEASPSLAEDQKPMFGSQVFQNHLSEFPN--ERTVAVQDPSTGLDNLATQ 1011
L VF D N + + K + + +H+ + T+ + L ++
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEI-DHIIMSKDAVSGTLRL------FWTLLSK 74
Query: 1012 QHGYASKRSRSQLKAYIAHMAEEMYVYRSLPLGQDRRRNRYWQFATSASRNDPC-SGRIF 1070
Q ++ ++ + Y + P+ + P R++
Sbjct: 75 Q--------EEMVQKFVEEVLRINYKFLMSPI-----KTEQ---------RQPSMMTRMY 112
Query: 1071 VELHDGTWRLIDTVEAFDALLSSLDARGTRESHLRIMLQKIETSFKDKVRRN--LQGIDT 1128
+E D RL + + F S R LR L ++ + +N + G+
Sbjct: 113 IEQRD---RLYNDNQVFAKYNVS---RLQPYLKLRQALLEL------RPAKNVLIDGVLG 160
Query: 1129 VGQSWTAI---KNEAAEMDVDP-----DFASSDSPSSTVCGLNS--------DTLETSSS 1172
G++W A+ + + +D + + +SP + + L T + S
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 1173 FRIELGRNEIEKKAALERFQDFQWWMWRECFNSLSLCASKNEKTRCRQLLVICDVCLDSY 1232
I+L + I +A L R + + C LLV+ +V
Sbjct: 221 SNIKLRIHSI--QAELRRL--LKSKPYENC------------------LLVLLNVQ---- 254
Query: 1233 LCEDAHCPSCHRTFGAVDKSSKFSEHSIQCEEKTKLGLRDIHVSDSSLPLGIRLLKPLSA 1292
+A + + A + + C K L R V+D L L
Sbjct: 255 ---NA------KAWNAFN---------LSC--KILLTTRFKQVTDF-LSAATTTHISLDH 293
Query: 1293 VIEAYIPPEALE--ASWTDERRKTWGMKLNMSSSA--EEVLQ----LLTI----LESGIK 1340
P E + L+ EVL L+I + G+
Sbjct: 294 HSMTLTPDEVKSLLLKY-----------LDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 1341 RS--YLSSNFETTKELLGSSFTCADP-------WSVPILP---WIPKTTAAVALRLLELD 1388
+ N + ++ SS +P + + P IP L L+ D
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL----LSLIWFD 398
Query: 1389 ASIMYVKPEKPEQFEE--------DKEANERV--IPSRYLPLKNKEVVLKELDQDRLVKE 1438
V +K+ E IPS YL LK K L + +V
Sbjct: 399 -----VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR-SIV-- 450
Query: 1439 ENYSNLAGKRKNYRRGKGNRD-----H-GWSRKYHKKTPSITADVGRRTAR-EHEGLNLR 1491
++Y N+ + D H G +H K + R L+ R
Sbjct: 451 DHY-NIPKTFDSDDLIPPYLDQYFYSHIG----HHLK----NIEHPERMTLFRMVFLDFR 501
Query: 1492 LKQQGLRTNGRGRRTVRKRADRTSKNETFQGQMGHMVIPDSSSGLHRNLDE 1542
+Q +R + + + + ++ I D+ R ++
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPY-----ICDNDPKYERLVNA 547
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 418 | Back alignment and structure |
|---|
| >4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene} Length = 240 | Back alignment and structure |
|---|
| >4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene} Length = 240 | Back alignment and structure |
|---|
| >4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene} Length = 240 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A* Length = 239 | Back alignment and structure |
|---|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427 | Back alignment and structure |
|---|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 | Back alignment and structure |
|---|
| >3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} PDB: 3ryf_E* 3ryh_E* 3ryi_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E* Length = 143 | Back alignment and structure |
|---|
| >3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus} Length = 526 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1651 | ||||
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 7e-09 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 4e-08 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 2e-07 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 3e-05 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 1e-07 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 6e-05 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 4e-04 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 3e-07 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 5e-07 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 6e-07 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 5e-05 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 0.002 |
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.7 bits (136), Expect = 7e-09
Identities = 19/111 (17%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 264 QTFNNDAEQRMEKKRKCDEARIAREVEANEIRIQKELERQDNLRRKNEERMRKEMEKHER 323
QT ++ ++ K + A+ + +K + + R +E +++ EK E
Sbjct: 197 QTLTEKEKEIEVERVKAESAQ--ASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMEN 254
Query: 324 ERRKEEERLMRERQREEERSLREQKREMERREKFLQKEYLRAEKRRLKEEL 374
+R +L++E++R L+EQ++ ++ + + ++ E + L+ ++
Sbjct: 255 DR----VQLLKEQERTLALKLQEQEQLLKEGFQ-KESRIMKNEIQDLQTKM 300
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00