Citrus Sinensis ID: 000366

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610--

MAAAESSLKRPTKRKLENTPYDRDEALPNKKFIRGQCRYKFKILFPNGATIDLLLIDPKHKMAVTDFICLVKDEYFKSWMRHDSMKRKRKINWNGGNLYVEDANLNKISDTINFEMFEPSKCHILKLYDGSGEIAKTFENMWDLTPDTDLLRELPEDYTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCSDAELTWRTNGGIRFPSKDEIADSPHGSFTKVEIWEPKLKSLDVKPLGCKLKDIYFPYIQCDEISSTGKTTRPIEFQVNGIDLAEVAGGEVAITNMHSCNGPDFILQLHFSLRQASATTNSPGSVCSFFLLLWLAMAYHLSSKCRLRIIPFPKNWNLSGSRPSKEANARLKFVYFPVTEEGESIDIIMNKLISEGCVAAANYDTRSRVSIRRLGRLLPDVHWAWLPLMDLRQRKGEKAHLLKKFCLRVKCFIDTDAGFNPTPSKTDLAHQNLYTIALKNFGAKTFKEEKDVTVEIRRDGKLLTPIQLEKDYQEWLLNMHDHYDAEKDCGVDQPILLVGHKNIKPLVISTDVARVHKVVKKKGAMWKSGQKVKLLKGAYAGIHNNDVYATIEYFVIEGLQGDAGGEARIICRPLAVPDEKGCVLAVNNGNASLHIGSSLSLPIGVIDSEKCVPVNKNVWDQQLEKYRQKSPSTIELLKETQCQELEIDGVLPSSAIAGQNPPREIVAVVRPASFISSSASKNLVQKYIVKNSSEMLMEVKFKCEDENLEDVVPLYTARVAPSSRKGYQGLYIFEVGCKFPKLFQNAGAYTFSFHLTETSCKSCEKKVLVKGSSEVGKWKLLDTKERPELRVRVGSFLPPLSVACYDIYDNRIPFESKPQFLVKIKPSKIIKVEDKLKWNLSPDKLTLNIQDILVASSKLDEIRPDYRATLVISSKDKPVSVSIPCRVTPGSLKNVAVHPQNLGILLPGSVIKMLKLEMFDAFYNNVKKGLEVELNVDGFCIEDQLGLRRKVDGYGCIDLSGLLKVKAGYGKNVSLSVLSDNGVIFKQDFQTEKRELRVISGVPECCTVGSQLEDITFEIVDSKGAVDVTIHDDDKSGQSHTLTIKSDVINTENSIRYAFRQGRCTVPAISLPQNEGCFCFVATHSQYTELNISIKVPIVRAPKLESDDIRTPCSDGKVFLLEGPSPIKHVGNHMVPIMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQSAASVICCSTKEFLCSKPRSNFMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIRHGAVSLDGGILKEDGIISLGCGNPTICFPIVRTRISTQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFMDLWQTSLK

cccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEccccccccHHHHHHHHHHHHHccccccccccccEEEEcccccEEEEcccccEEEccccccccccccEEEEEEEcccccHHccccccccccccHHHHHHccccccHHHHHHHHHccccHHccccccccEEEEEEEEcccEEEEEEccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHccccEEEEEEEEccccEEEEEEEEHHHHHHcccccccccccccccccccccccccccccEEEEEEccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEcccccccccEEEEEEccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHEEEccEEEEccccccccccccccccHHHHHHHHHHccccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHcccccEEccccccEEEEccccccccccccccEEEEEEEEEcccEEccccEEEEEcccccccccccEEEEEEEEEEEcccccccccEEEEEEEcccccccccEEEEccccccccccccEEcccccccccccccccHHHHHHHHHHHccccccEEEEccccccccccccccccccccccccccccEEEEEcccccccccccccccccEEEcccccEEEEEEEEcccccccccccccccEEcccccccccEEEEEEEcccccccccccccEEEEEEEEccccccccEEEEEEccccccccEEccccccccEEEEEccccccEEEEEEcccccccccccccccEEEEcccccEEEEEccEEEEcccccEEEEEEEEEccccccccccccEEEEEEEccccccEEEEEEEEEcccccEEEEcccccccccccccccEEEEEEEEcccccccccEEEEEEEccEEEEcccccEEEccccccccccccEEEEEEcccEEEEEEEccccEEEEEEccccccEEEccccccccccccccccccEEEEEcccccEEEEEcccccccccEEEEEEcccccccccHHHHHHcccccccccccccccccEEEEEEEEEccEEcccccccEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHcccccccccccccccccccEEEEEEEEEEEcccHHHHHHHHHccccEEEEEEccHHHHHHHHHHcccccccccccHHHHHHHHcccccccEEEEEEccccccccccccccccccccccccccccccccccccEEEEEEEEccccccEEEEccccccccEEEEEEcccEEEEEcHHHHHHHHccccccEEEEcccEEccccEEEEccccccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc

cccccccccccccEEEEEccccccHccccccEEcccEEEEEEEEcccccEEEEEEccccccccHHHHHHHHHHHHHHHccccccccccEEEEcccccEEEEEccccccEEEEEHHHccccccEEEEEEccccccccHccccccccccHHHHHHccccccHHHHHHHHHHHHHHHHHccccccEEEEEEEEcccEEEEEEccccccccccccHHHHccccccccccccccccccccccccccccccccccHHHHHHcccEEEEEEEccccEEEEEEEEcHHHHHcccccccccccccccccccHHHHHccccccEEEEEEEcccccHHcHHHHHHHHHHcccEEEEcccccccccEEccEEEEEccccHHHHccccEEEEccccccccccEEEEEEEEccccccccccccHHHHHHHccEEEEEEEEccccccccccccEcccccccccEEEcEEEEEEEEEcccccccHHHHHHHHHHccccccccccccccEEEEEccccccHHHHHccccHcHHHccccHHHHHHHHHcEEEEEEEccccccccccHcHHHHccHHHHHHHHcccccccccccEEEEEEEcccEccHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEccHHHHHccccccHEHHHHHEEcccccccccccEEEEcccccccccccEEEEEEEEEEEccccccccEEEEEEEccccccccccEEEEEccccEEEEccEEEEcEEEEccccEEEccHHHHHHHHHHHHcccccEEEEcccccHHHcccccccccccccccccccEEEEEEEcccccccccccccccEEEEEcccEEEEEEEEccccccccccEEEEEEEEccccccccEEEEEEccccccccHHccccEEEEEEEEcccccccccEEEEEEccccccEEEEcccccccccEEEEccccccEEEEEEEccccccccccccEEEEEEcccEEEEEEccEEEEEcccccEEEEEEEEEEcccHHHccccccEEEEEEccccccEEEEEEEEcccccHHEEEcccHHHHccccccHHHEEEEEEcccccccccccEEEEEEEEEEEEcccccEEEEccccEEEccHHHHHHcccccEEEEEEEccccEEEEEEEHHHHHHHHHHHccccccccccccEEEEEEEEEccccccccEccccccccEEEEEEEccccccHccEEEEEEccEEEEccccccccccEEEEEEEEcccccEEEEEEEEEEcccccccccccccccccccEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHccccEEEEEEccHHHHHHHHHHcccccEccccHHHHHHHHccccccccEEEEEEccccccccccccccHHHHccccccccccccccccccEEEEEEEEccHcHcEEEccccccHHHHHHHHHHHHcEEEccHHHHHHHcHHcccccEEEcccEEccccEEEEcccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc

maaaesslkrptkrklentpydrdealpnkkfirgqcrykfkilfpngatidlllidpkhkmavTDFICLVKDEYFKSWMRHDSMKRKRkinwnggnlyvedanlnkisdtinfemfepskchilklydgsgeiAKTFenmwdltpdtdllrelpedytFETALADLIDNSLQAVWTNAKNERRLISVniaedkisvfdtgpgmdstdensivkwgKMGASLHRASkaqgiggkppyltpffgmfgyggpiasmhLGRRALVSSKTKVSKEVYTLHLEKEALMRCSDAEltwrtnggirfpskdeiadsphgsftkveiwepklksldvkplgcklkdiyfpyiqcdeisstgkttrpiefqvngidlaevaggEVAItnmhscngpDFILQLHFSLrqasattnspgsvCSFFLLLWLAMAYHLSSkcrlriipfpknwnlsgsrpskeaNARLKFvyfpvteegesIDIIMNKLISEgcvaaanydtrsrvSIRRLGRLLPDVHWAWLPLMDLRQRKGEKAHLLKKFCLRVKCfidtdagfnptpsktdlahQNLYTIALKNfgaktfkeekDVTVEIRrdgklltpIQLEKDYQEWLLNMHDhydaekdcgvdqpillvghknikplvisTDVARVHKVVKKkgamwksgqKVKLLKGAYagihnndvYATIEYFVIEglqgdaggeariicrplavpdekgcvlAVNNgnaslhigsslslpigvidsekcvpvnknvWDQQLEKYRQKSPSTIELLKETQCqeleidgvlpssaiagqnppreivavvrpasfisssasKNLVQKYIVKNSSEMLMEVKFKcedenledvvplytarvapssrkgyqgLYIFEVGckfpklfqnagaytfsfhLTETSCKSCEKKVLVKgssevgkwklldtkerpelrvrvgsflpplsvacydiydnripfeskpqflvkikpskiikvedklkwnlspdkltlNIQDILVASSkldeirpdyrATLVisskdkpvsvsipcrvtpgslknvavhpqnlgillpGSVIKMLKLEMFDAFYNNVKKGLEVELnvdgfciedqlglrrkvdgygcidlsgllkvkagygknvslsvlsdngvifkqdfQTEKRELRVisgvpecctvgsqledITFEivdskgavdvtihdddksgqshtltiksdvintENSIRYAFRqgrctvpaislpqnegcfcfVATHSQYTELNISIkvpivrapklesddirtpcsdgkvfllegpspikhvgnhmVPIMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVsvepyslltKEEIIRRIKSIYQSAASVICcstkeflcskprsnfmedvvgPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKyeqdgtidrKCALHATAAALGKSIDGRYLVICLegirpysgkfgsndpqrklalpaptlpkgnipagfVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIrhgavsldggilkedgiislgcgnpticfpivrtRISTQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFMDLWQTSLK

maaaesslkrptkrklentpydrdealpnkkfirgQCRYKFKILFPNGATIDLLLIDPKHKMAVTDFICLVKDEYFKSwmrhdsmkrkrkinwnggnlyVEDANLNKISDTINFEMFEPSKCHILKLYDGSGEIAKTFENMWDLTPDTDLLRELPEDYTFETALADLIDNSLQAVWTNAknerrlisvniaedkisvfdtgpgmdstDENSIVKWGKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCSDAELTWrtnggirfpskdeiadsphgsftkveiwepklksldvkPLGCKLKDIYFPYIQCDEISSTGKTTRPIEFQVNGIDLAEVAGGEVAITNMHSCNGPDFILQLHFSLRQASATTNSPGSVCSFFLLLWLAMAYHLSSKCRLRIIPFpknwnlsgsrpskeanaRLKFVYFPVTEEGESIDIIMNKLISEGCVAAANYDTRSRVSIRRLGRLLPDVHWAWLPLMDLRQRKGEKAHLLKKFCLRVKCFIDTDAGFNPTPSKTDLAHQNLYTIALKnfgaktfkeekdvtveirrdgklltpiqLEKDYQEWLLNMHDHYDAEKDCGVDQPILLVGHKnikplvistdvaRVHKVVkkkgamwksgqkvKLLKGAYAGIHNNDVYATIEYFVIEGLQGDAGGEARIICRPLAVPDEKGCVLAVNNGNASLHIGSSLSLPIGVIDSEKCVPVNKNVWDQQLEKYRQKSPSTIELLKETQCQELEIDGVLpssaiagqnPPREIVAVVRPasfisssasknlvQKYIVKNSSEMLMEVKFKCEDENLEDVVPLYTarvapssrkgYQGLYIFEVGCKFPKLFQNAGAYTFSFHLTETSCKSCEKKVLvkgssevgkwklldtkerpelrvrvgsflpplsVACYDIYDNripfeskpqflvkikpskiikvedklkwnlspdkltlnIQDILVasskldeirpDYRATlvisskdkpvsvsIPCRVTPGSLKNVAVHPQNLGILLPGSVIKMLKLEMFDAFYNNVKKGLEVELNVDGFCIEDQLGLRRKVDGYGCIDLSGLLKVKAGYGKNVSlsvlsdngviFKQDFQTEKRELRVISGVPECCTVGSQLEDITFEIVDSKGAVDVTIhdddksgqshtltiksdvinteNSIRYAFRQGRCTVPAISLPQNEGCFCFVATHSQYTELNISIKVPIVRAPKLESDDIRTPCSDGKVFLLegpspikhvgnHMVPIMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSklqvsvepyslltKEEIIRRIKSIYQSAASVICCSTKEFLCSKPRSNFMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAalgksidgRYLVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIRHGAVSLDGGILKEDGIISLGCGNPTICFPIVRTRISTQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKlknsedkfnsfmdlwqtslk

*****************************KKFIRGQCRYKFKILFPNGATIDLLLIDPKHKMAVTDFICLVKDEYFKSWMRHDSMKRKRKINWNGGNLYVEDANLNKISDTINFEMFEPSKCHILKLYDGSGEIAKTFENMWDLTPDTDLLRELPEDYTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDT***********IVKWGKMGASL******QGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCSDAELTWRTNGGIRFPS********HGSFTKVEIWEPKLKSLDVKPLGCKLKDIYFPYIQCDEISSTGKTTRPIEFQVNGIDLAEVAGGEVAITNMHSCNGPDFILQLHFSLRQASATTNSPGSVCSFFLLLWLAMAYHLSSKCRLRIIPFPKNWNLS********NARLKFVYFPVTEEGESIDIIMNKLISEGCVAAANYDTRSRVSIRRLGRLLPDVHWAWLPLMDLRQRKGEKAHLLKKFCLRVKCFIDTDAGFNPTPSKTDLAHQNLYTIALKNFGAKTFKEEKDVTVEIRRDGKLLTPIQLEKDYQEWLLNMHDHYDAEKDCGVDQPILLVGHKNIKPLVISTDVARVHKVVKKKGAMWKSGQKVKLLKGAYAGIHNNDVYATIEYFVIEGLQGDAGGEARIICRPLAVPDEKGCVLAVNNGNASLHIGSSLSLPIGVIDSEKCVPVNKNVWDQQLEKY*******IELLKETQCQELEIDGVLP***********EIVAVVRPASFISSSASKNLVQKYIVKNSSEMLMEVKFKCEDENLEDVVPLYTARVAPSSRKGYQGLYIFEVGCKFPKLFQNAGAYTFSFHLTETSCKSCEKKVLVKGSSEVGKWKLLDTKERPELRVRVGSFLPPLSVACYDIYDNRIPFESKPQFLVKIKPSKIIKVEDKLKWNLSPDKLTLNIQDILVASSKLDEIRPDYRATLVISSKDKPVSVSIPCRVTPGSLKNVAVHPQNLGILLPGSVIKMLKLEMFDAFYNNVKKGLEVELNVDGFCIEDQLGLRRKVDGYGCIDLSGLLKVKAGYGKNVSLSVLSDNGVIFKQDFQTEKRELRVISGVPECCTVGSQLEDITFEIVDSKGAVDVTIHD*******HTLTIKSDVINTENSIRYAFRQGRCTVPAISLPQNEGCFCFVATHSQYTELNISIKVPIVRAPKLESDDIRTPCSDGKVFLLEGPSPIKHVGNHMVPIMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQSAASVICCSTKEFLCSKPRSNFMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICLEGIRPYSGKF**************TLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIRHGAVSLDGGILKEDGIISLGCGNPTICFPIVRTRISTQSIEALKQIEEKKLELDGIMQLI*********************************

*******************************FIRGQCRYKFKILFPNGATIDLLLIDPKHKMAVTDFICLVKDEYF***************NWNGGNLYVEDANLNKISDTINFEMFEPSKCHILKLYDGSGEIAKTFENMWDLTPDTDLLRELPEDYTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKW***********************TPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCSDAELTWRTNG****************SFTKVEIWEPKLKSLDVKPLGCKLKDIYFPYIQCD***************VNGIDLAEVAGGEV************FILQLHFSLRQASATTNSPGSVCSFFLLLWLAMAYHLSSKCRLRIIPFPKNWNL*********NARLKFVYFPVTEEGESIDIIMNKLI**GCVAAANYDTRSRVSIRRLGRLLPDVHWAWLPLMD*************KFCLRVKCFIDTDAGFNPTPSKTDLAHQNLYTIALKNF*************EI***G*LLTPIQLEKDYQEWLLNMHDHYDAEKDCGVDQPILLVGHKN****VISTDVARVHKVVKKKGAMWKSGQKVKLLKGAYAGIHNNDVYATIEYFVIEGLQGDAGGEARIICRPLAVPDEKGCVLAVNNGNASLHIGSSLSLPIGVIDSEKCVPVNKNVWDQQLEKYRQKSPSTIELLKETQCQELEIDGVLPSSAIAGQNPPREIVAVV*******************VKNSSEMLMEVKFKCED*N**DVVPLYTARVAPSSRKGYQGLYIFEVGCKFPKLFQNAGAYTFSFHLTETSCKSCEKKVLVKGSSEVGKWK*L*TKERPELRVRVGSFLPPLSVACYDIYDNRIPFESKPQFLVKIKPSKIIKVE*K*KWNLSPDKLTLNIQDILVASSKLDEIRPDYRATLVISSKDKPVSVSIPCRVTPGSLKNVAVHPQNLGILLPGSVIKMLKLEMFDAFYNNVKKGLEVELNVDGFCIEDQLGLRRKVDGYGCIDLSGLLKVKAGYGKNVSL*V****************************CTVGSQLEDITFEIVDSKGAVDVTIHD*****************NTENSIRYAFRQ**********PQNEGCFCFVATHSQYTELNISIKVPIVRA***********************************************************************************************************IC*****************DVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICLEGIRPYSG************LPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIRHGAVSLDGGILKEDGIISLGCGNPTICFPI********************************************************LWQT***

*************RKLENTPYDRDEALPNKKFIRGQCRYKFKILFPNGATIDLLLIDPKHKMAVTDFICLVKDEYFKSWMRHDSMKRKRKINWNGGNLYVEDANLNKISDTINFEMFEPSKCHILKLYDGSGEIAKTFENMWDLTPDTDLLRELPEDYTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCSDAELTWRTNGGIRFPSKDEIADSPHGSFTKVEIWEPKLKSLDVKPLGCKLKDIYFPYIQCDEISSTGKTTRPIEFQVNGIDLAEVAGGEVAITNMHSCNGPDFILQLHFSLRQASATTNSPGSVCSFFLLLWLAMAYHLSSKCRLRIIPFPKNWNLSGSRPSKEANARLKFVYFPVTEEGESIDIIMNKLISEGCVAAANYDTRSRVSIRRLGRLLPDVHWAWLPLMDLRQRKGEKAHLLKKFCLRVKCFIDTDAGFNPTPSKTDLAHQNLYTIALKNFGAKTFKEEKDVTVEIRRDGKLLTPIQLEKDYQEWLLNMHDHYDAEKDCGVDQPILLVGHKNIKPLVISTDVARVHKVVKKKGAMWKSGQKVKLLKGAYAGIHNNDVYATIEYFVIEGLQGDAGGEARIICRPLAVPDEKGCVLAVNNGNASLHIGSSLSLPIGVIDSEKCVPVNKNVWDQQLEKYRQKSPSTIELLKETQCQELEIDGVLPSSAIAGQNPPREIVAVVRPASFISSSASKNLVQKYIVKNSSEMLMEVKFKCEDENLEDVVPLYTARVAPSSRKGYQGLYIFEVGCKFPKLFQNAGAYTFSFHLTETSCKSCEKKVLVKGSSEVGKWKLLDTKERPELRVRVGSFLPPLSVACYDIYDNRIPFESKPQFLVKIKPSKIIKVEDKLKWNLSPDKLTLNIQDILVASSKLDEIRPDYRATLVISSKDKPVSVSIPCRVTPGSLKNVAVHPQNLGILLPGSVIKMLKLEMFDAFYNNVKKGLEVELNVDGFCIEDQLGLRRKVDGYGCIDLSGLLKVKAGYGKNVSLSVLSDNGVIFKQDFQTEKRELRVISGVPECCTVGSQLEDITFEIVDSKGAVDVTIHDDDKSGQSHTLTIKSDVINTENSIRYAFRQGRCTVPAISLPQNEGCFCFVATHSQYTELNISIKVPIVRAPKLESDDIRTPCSDGKVFLLEGPSPIKHVGNHMVPIMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQSAASVICCSTKEFLCSKPRSNFMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIRHGAVSLDGGILKEDGIISLGCGNPTICFPIVRTRISTQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFMDLWQTSLK

************KRKLENTPYDRDEALPNKKFIRGQCRYKFKILFPNGATIDLLLIDPKHKMAVTDFICLVKDEYFKSWMRHDSMKRKRKINWNGGNLYVEDANLNKISDTINFEMFEPSKCHILKLYDGSGEIAKTFENMWDLTPDTDLLRELPEDYTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMD***ENSIVKWGKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCSDAELTWRTNGGIRFPSKDEIADSPHGSFTKVEIWEPKLKSLDVKPLGCKLKDIYFPYIQCDEISSTGKTTRPIEFQVNGIDLAEVAGGEVAITNMHSCNGPDFILQLHFSLRQASATTNSPGSVCSFFLLLWLAMAYHLSSKCRLRIIPFPKNWNLSGSRPSKEANARLKFVYFPVTEEGESIDIIMNKLISEGCVAAANYDTRSRVSIRRLGRLLPDVHWAWLPLMDLRQRKGEKAHLLKKFCLRVKCFIDTDAGFNPTPSKTDLAHQNLYTIALKNFGAKTFKEEKDVTVEIRRDGKLLTPIQLEKDYQEWLLNMHDHYDAEKDCGVDQPILLVGHKNIKPLVISTDVARVHKVVKKKGAMWKSGQKVKLLKGAYAGIHNNDVYATIEYFVIEGLQGDAGGEARIICRPLAVPDEKGCVLAVNNGNASLHIGSSLSLPIGVIDSEKCVPVNKNVWDQQLEKYRQKSPSTIELLKETQCQELEIDGVLPSSAIAGQNPPREIVAVVRPASFISSSASKNLVQKYIVKNSSEMLMEVKFKCEDENLEDVVPLYTARVAPSSRKGYQGLYIFEVGCKFPKLFQNAGAYTFSFHLTETSCKSCEKKVLVKGSSEVGKWKLLDTKERPELRVRVGSFLPPLSVACYDIYDNRIPFESKPQFLVKIKPSKIIKVEDKLKWNLSPDKLTLNIQDILVASSKLDEIRPDYRATLVISSKDKPVSVSIPCRVTPGSLKNVAVHPQNLGILLPGSVIKMLKLEMFDAFYNNVKKGLEVELNVDGFCIEDQLGLRRKVDGYGCIDLSGLLKVKAGYGKNVSLSVLSDNGVIFKQDFQTEKRELRVISGVPECCTVGSQLEDITFEIVDSKGAVDVTIHDDDKSGQSHTLTIKSDVINTENSIRYAFRQGRCTVPAISLPQNEGCFCFVATHSQYTELNISIKVPIVRAPKLESDDIRTPCSDGKVFLLEGPSPIKHVGNHMVPIMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQSAASVICCSTKEFLCSKPRSNFMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIRHGAVSLDGGILKEDGIISLGCGNPTICFPIVRTRISTQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFMDLWQTS**

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MAAAESSLKRPTKRKLENTPYDRDEALPNKKFIRGQCRYKFKILFPNGATIDLLLIDPKHKMAVTDFICLVKDEYFKSWMRHDSMKRKRKINWNGGNLYVEDANLNKISDTINFEMFEPSKCHILKLYDGSGEIAKTFENMWDLTPDTDLLRELPEDYTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCSDAELTWRTNGGIRFPSKDEIADSPHGSFTKVEIWEPKLKSLDVKPLGCKLKDIYFPYIQCDEISSTGKTTRPIEFQVNGIDLAEVAGGEVAITNMHSCNGPDFILQLHFSLRQASATTNSPGSVCSFFLLLWLAMAYHLSSKCRLRIIPFPKNWNLSGSRPSKEANARLKFVYFPVTEEGESIDIIMNKLISEGCVAAANYDTRSRVSIRRLGRLLPDVHWAWLPLMDLRQRKGEKAHLLKKFCLRVKCFIDTDAGFNPTPSKTDLAHQNLYTIALKNFGAKTFKEEKDVTVEIRRDGKLLTPIQLEKDYQEWLLNMHDHYDAEKDCGVDQPILLVGHKNIKPLVISTDVARVHKVVKKKGAMWKSGQKVKLLKGAYAGIHNNDVYATIEYFVIEGLQGDAGGEARIICRPLAVPDEKGCVLAVNNGNASLHIGSSLSLPIGVIDSEKCVPVNKNVWDQQLEKYRQKSPSTIELLKETQCQELEIDGVLPSSAIAGQNPPREIVAVVRPASFISSSASKNLVQKYIVKNSSEMLMEVKFKCEDENLEDVVPLYTARVAPSSRKGYQGLYIFEVGCKFPKLFQNAGAYTFSFHLTETSCKSCEKKVLVKGSSEVGKWKLLDTKERPELRVRVGSFLPPLSVACYDIYDNRIPFESKPQFLVKIKPSKIIKVEDKLKWNLSPDKLTLNIQDILVASSKLDEIRPDYRATLVISSKDKPVSVSIPCRVTPGSLKNVAVHPQNLGILLPGSVIKMLKLEMFDAFYNNVKKGLEVELNVDGFCIEDQLGLRRKVDGYGCIDLSGLLKVKAGYGKNVSLSVLSDNGVIFKQDFQTEKRELRVISGVPECCTVGSQLEDITFEIVDSKGAVDVTIHDDDKSGQSHTLTIKSDVINTENSIRYAFRQGRCTVPAISLPQNEGCFCFVATHSQYTELNISIKVPIVRAPKLESDDIRTPCSDGKVFLLEGPSPIKHVGNHMVPIMKIVNELESEVRNYGLCxxxxxxxxxxxxxxxxxxxxxxxxxxxxVEPYSLLTKEEIIRRIKSIYQSAASVICCSTKEFLCSKPRSNFMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIRHGAVSLDGGILKEDGIISLGCGNPTICFPIVRTRISTQSIEALKQIEEKKLELDGIxxxxxxxxxxxxxxxxxxxxxxxxFNSFMDLWQTSLK

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1612
302143908		1718	unnamed protein product [Vitis vinifera]	0.814	0.764	0.516	0.0
297812599		1607	predicted protein [Arabidopsis lyrata su	0.926	0.929	0.459	0.0
334187894		1598	gamma-irradiation and mitomycin c induce	0.926	0.934	0.448	0.0
10177088		1634	unnamed protein product [Arabidopsis tha	0.926	0.913	0.440	0.0
359490805		1887	PREDICTED: uncharacterized protein LOC10	0.493	0.421	0.585	0.0
147767611		1459	hypothetical protein VITISV_043621 [Viti	0.491	0.542	0.527	0.0
357436479		1675	hypothetical protein MTR_1g008050 [Medic	0.433	0.416	0.527	0.0
147779006		1117	hypothetical protein VITISV_039356 [Viti	0.405	0.584	0.498	0.0
357436467		1009	hypothetical protein MTR_1g007990 [Medic	0.430	0.687	0.449	1e-159
357436465		521	hypothetical protein MTR_1g007950 [Medic	0.292	0.904	0.537	1e-153

>gi\|302143908\|emb\|CBI23013.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1396 bits (3613), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 735/1423 (51%), Positives = 947/1423 (66%), Gaps = 110/1423 (7%)

Query: 240  PFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCSDAELTWRTNGGIR 299
            PFFGMFGYGGPIASMHLGR ALVSSKTK SK+VYTLHLE+EAL+  S ++LTWRT+GGIR
Sbjct: 337  PFFGMFGYGGPIASMHLGRCALVSSKTKESKKVYTLHLEREALLSSSGSDLTWRTSGGIR 396

Query: 300  FPSKDEIADSPHGSFTKVEIWEPKLKSLDVKPLGCKLKDIYFPYI--------QCDEISS 351
             PS++E   SPHGSFTKVEI++PK++ L+V  L  KLKDIYFPYI        QCDE+  
Sbjct: 397  NPSEEETEKSPHGSFTKVEIFKPKIERLNVFQLQRKLKDIYFPYIQVAIGGVVQCDEVCD 456

Query: 352  TGKTTRPIEFQVNGIDLAEVAGGEVAITNMHSCNGPDFILQLHFSLRQASATTNSPGSVC 411
            TGKT  P+EFQVNG+DLAE+ GGEV  TN+HS NGP+F+LQL F   Q +  T SP    
Sbjct: 457  TGKTNTPVEFQVNGLDLAEIDGGEVGTTNLHSSNGPEFVLQLRFYGNQDNVATKSP---- 512

Query: 412  SFFLLLWLAMAYHLSSKCRLRIIPFPKNWNLSGSRPSKEANARLKFVYFPVTEEGESIDI 471
                                            G R S+EANARLK VYFP+ E  E+++ 
Sbjct: 513  --------------------------------GLRSSQEANARLKCVYFPIVEGKENLET 540

Query: 472  IMNKLISEGCVAAANYDTRSRVSIRRLGRLLPDVHWAWLPLMDLRQRKGEKAHLLKKFCL 531
            I+ KL +EGC    NYDT SRVSIRRLGRLLPD  W+ LP M+ + +KG+K  LLK+ C 
Sbjct: 541  ILEKLEAEGCGTNENYDTFSRVSIRRLGRLLPDARWSLLPFMEHKLKKGDKGQLLKRCCR 600

Query: 532  RVKCFIDTDAGFNPTPSKTDLAHQNLYTIALKNFGAKTFKEEK-DVTVEIRRDGKLLTPI 590
            RVKCFIDTDAGFNPTPSKTDLAH N +T ALK+FG K  ++ + ++ VEI RDGK LT +
Sbjct: 601  RVKCFIDTDAGFNPTPSKTDLAHHNPFTKALKDFGNKPPEKGRGNINVEILRDGKSLTLL 660

Query: 591  QLEKDYQEWLLNMHDHYDAEKDCGVDQPILLVGHKNIKPLVISTDVARVHKVVKKKGAMW 650
            QLEK+Y +W+  MHD YD E D G DQP+++VG  N K L IS+DV RVH+++++KG  W
Sbjct: 661  QLEKEYLDWISQMHDLYDEEIDSGEDQPVIVVGSLNKKQLGISSDVVRVHEIIRRKGKSW 720

Query: 651  KSGQKVKLLKGAYAGIHNNDVYATIEYFVIEGLQGDAGGEARIICRPLAVPDEKGCVLAV 710
            K GQK+K+LKGA  G H ++V+AT+EY ++EG QGDAGGEAR+ICRPL++PDE GC+LAV
Sbjct: 721  KRGQKIKVLKGACPGCHKSNVFATLEYILLEGFQGDAGGEARLICRPLSLPDEDGCILAV 780

Query: 711  NNGNASLHIGSSLSLPIGVIDSEKCVPVNKNVWDQQLEKYRQKSPSTIELLKETQCQELE 770
            ++G AS     SLSLPI VIDS KC+ V  + W  QLEK RQK+PSTI++L E  C ELE
Sbjct: 781  DDGAASFDCRGSLSLPISVIDSGKCLAVESSEWLFQLEKQRQKAPSTIDILSERHCLELE 840

Query: 771  IDGVLPSSAI--AGQNPPREIVAVVRPASFISSSASKNLVQKYIVKNSSEMLMEVKFKCE 828
            +DG LP  A   AGQ PP+EIVAVVRPASF+S                    MEVK    
Sbjct: 841  VDGALPVDAPVHAGQVPPKEIVAVVRPASFLS--------------------MEVKLM-- 878

Query: 829  DENLEDVVPLYTARVAPSSRKGYQGLYIFEVGCKFPKLFQNAGAYTFSFHLTETSCKSCE 888
             +  +D   +Y+  V PSSR G+ GLYIF +GCKFP+LFQ AG YTF+  L  +S KSCE
Sbjct: 879  -DGTKDTKHIYSKCVTPSSRNGFHGLYIFPLGCKFPQLFQKAGVYTFTVFLKGSSFKSCE 937

Query: 889  KKVLVKGSSEVGKWKLLDTKERPELRVRVGSFLPPLSVACYDIYDNRIPFESKPQFLVKI 948
            K+VLVK   +V  W+     +     VR GS LPP S+ACYD Y+N+IPF S P+F++K 
Sbjct: 938  KRVLVKALPKVSSWRFSSDIQNTVYSVRAGSCLPPFSIACYDSYENQIPFTSIPEFIIKS 997

Query: 949  K-PSKIIKVEDKLKWNLSPDKLTLNIQDILVASSKLDEIRPDYRATLVISSKDKPVSVSI 1007
                 ++   DK+K  LS D LTL ++D+L+ SS LD+IRP Y  TLV+  +D+  S+S+
Sbjct: 998  NWNGGVLADFDKMKLELSSDNLTLKVKDVLIESSDLDKIRPSYATTLVLCPRDELPSISV 1057

Query: 1008 PCRVTPGSL-KNVAVHPQNLGILLPGSVIKMLKLE------------------------- 1041
             C V PG L + +A  P +   LLPG VI+ L LE                         
Sbjct: 1058 ACEVNPGPLERAIAQPPVSDNQLLPGCVIEELVLEVSSHIVIILPHDDQFIHTIVLCMLF 1117

Query: 1042 ----MFDAFYNNVKKGLEVELNVDGFCIEDQLGLRRKVDGYGCIDLSGLLKVKAGYGKNV 1097
                MFDA+ N+ ++GLEV+ NVDGFC +D  GL+RKVD  GCIDLSGLL+V  GYGKNV
Sbjct: 1118 LPLFMFDAYGNHAREGLEVQFNVDGFCFQDHNGLKRKVDDRGCIDLSGLLRVTTGYGKNV 1177

Query: 1098 SLSVLSDNGVIFKQDFQTEKRELRVISGVPECCTVGSQLEDITFEIVDSKGAVDVTIHDD 1157
            SLSVLS N V+FKQ+ QTEKRELR  S VP+ C  GSQLE+I FEI++SKG VD T+H++
Sbjct: 1178 SLSVLSGNKVVFKQELQTEKRELRAASIVPQSCAAGSQLENIVFEIINSKGEVDETVHEE 1237

Query: 1158 DKSGQSHTLTIKSDVINTENSIRYAFRQGRCTVPAISLPQNEGCFCFVATHSQYTELNIS 1217
            +K GQ HTLTI SD    + S+R+AFR GRC +P I LP+ +G F F+A HS + EL+++
Sbjct: 1238 EKHGQFHTLTIMSDSFYLDGSVRFAFRNGRCIIPTIPLPRKQGDFTFLAAHSCHPELSLA 1297

Query: 1218 IKVPIVRAPKLESDDIRTPCSDGKVFLLEGPSPIKHVGNHMV-PIMKIVNELESEVRNYG 1276
            +KV +V   K++ +D++    +  + LL+     +HV N +V  +M    E+E ++   G
Sbjct: 1298 VKVSVVEVLKVKQEDVQLQYPNENMLLLQDSPAPRHVENSLVESLMNDEKEIEDDICKIG 1357

Query: 1277 LCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYS-------LLTKEEIIRRIKSIYQSA 1329
            L IG +E+ L+LL+ QK ++E+ + KLQ SVE  S       L  KE ++R I+   +SA
Sbjct: 1358 LFIGDNERKLELLHKQKGDIEQSIEKLQASVEYDSFNNHRGYLSKKESVMRCIEKKDKSA 1417

Query: 1330 ASVICCSTKEFLCSKPRSNFMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSF 1389
            A+  C  ++E     P S  M+D+VG VAL+ TV  N+L R LAEYLGE QMLA+VCRS+
Sbjct: 1418 AAFFCNLSREIPFQDPVSQLMKDIVGVVALLATVRINRLGRMLAEYLGEDQMLAVVCRSY 1477

Query: 1390 EAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICLEGIRPYSGKFGSNDPQRKL 1449
            EAA  LEKYE DG +DR+ AL+A A   GK I+ R+LVICLE IRPY G F  NDPQRKL
Sbjct: 1478 EAASKLEKYEWDGKVDREHALYAVAKTFGKPINDRFLVICLENIRPYIGGFQDNDPQRKL 1537

Query: 1450 ALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK 1509
             +P P LP G +P GF+GYAVNMV+L+ HH+  RT+AG+GLRETL Y LFG+LQVY+TR+
Sbjct: 1538 NIPNPILPTGEMPPGFLGYAVNMVDLESHHLLTRTTAGHGLRETLFYCLFGELQVYQTRE 1597

Query: 1510 DMIEAHTCIRHGAVSLDGGILKEDGIISLGCGNPTICFPIVRTRISTQSIEALKQIEEKK 1569
            DM +A    RHGAVSLDGGI+K +G+IS GC  P I FP+     S +++  L+ IEEK+
Sbjct: 1598 DMKKACFYARHGAVSLDGGIMKGNGVISFGCREPQIWFPVANLE-SPKNVRILEVIEEKR 1656

Query: 1570 LELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFMDLWQTSLK 1612
              L  +   I +  K + K  +KL+    +    MD  +  +K
Sbjct: 1657 TSLRLVHNEIGKLTKIINKAQKKLQKKISRCRKLMDRLEPCMK 1699

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297812599\|ref\|XP_002874183.1\| predicted protein [Arabidopsis lyrata subsp. lyrata] gi\|297320020\|gb\|EFH50442.1\| predicted protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|334187894\|ref\|NP_197816.3\| gamma-irradiation and mitomycin c induced 1 [Arabidopsis thaliana] gi\|332005896\|gb\|AED93279.1\| gamma-irradiation and mitomycin c induced 1 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|10177088\|dbj\|BAB10394.1\| unnamed protein product [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|359490805\|ref\|XP_002272676.2\| PREDICTED: uncharacterized protein LOC100252197 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147767611\|emb\|CAN64522.1\| hypothetical protein VITISV_043621 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357436479\|ref\|XP_003588515.1\| hypothetical protein MTR_1g008050 [Medicago truncatula] gi\|355477563\|gb\|AES58766.1\| hypothetical protein MTR_1g008050 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|147779006\|emb\|CAN73471.1\| hypothetical protein VITISV_039356 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357436467\|ref\|XP_003588509.1\| hypothetical protein MTR_1g007990 [Medicago truncatula] gi\|355477557\|gb\|AES58760.1\| hypothetical protein MTR_1g007990 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357436465\|ref\|XP_003588508.1\| hypothetical protein MTR_1g007950 [Medicago truncatula] gi\|355477556\|gb\|AES58759.1\| hypothetical protein MTR_1g007950 [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1612
TAIR\|locus:2082876		420	DMS3 "AT3G49250" [Arabidopsis	0.204	0.785	0.394	1.1e-49
DICTYBASE\|DDB_G0277185		2284	DDB_G0277185 [Dictyostelium di	0.068	0.048	0.298	6.2e-13

TAIR\|locus:2082876 DMS3 "AT3G49250" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 531 (192.0 bits), Expect = 1.1e-49, P = 1.1e-49
 Identities = 138/350 (39%), Positives = 191/350 (54%)

Query:  1268 LESEVRNYGLCIGRHEKALKLLNDQKMEVEEVL-------SKLQVSVEPYS-----LLTK 1315
             LES++   G  I +HE  LK L  QK +++E +       SKL  S  P S      L  
Sbjct:    56 LESDLEAMGNKIKQHEDNLKFLKSQKNKMDEAIVDLQVHMSKLNSSPTPRSENSDNSLQG 115

Query:  1316 EEIIRRIKSIYQSAASVICCSTKEFLCSKPRSNFM--EDVVGPVALIGTVCTNKLSRTLA 1373
             E+I  +I     SAA V+  S  E L     S  M  + VVG VA +G V    LS+ L+
Sbjct:   116 EDINAQILRHENSAAGVL--SLVETLHGAQASQLMLTKGVVGVVAKLGKVNDENLSQILS 173

Query:  1374 EYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICLEGI 1433
              YLG   MLA+VCR++E+  ALE Y+  G ID    LH   +++G+ I   +  ICLE +
Sbjct:   174 NYLGTRSMLAVVCRNYESVTALEAYDNHGNIDINAGLHCLGSSIGREIGDSFDAICLENL 233

Query:  1434 RPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRET 1493
             RPY G+  ++D QR+L L  P LP G  P GF+G+AVNM+ +D  ++   TS G GLRET
Sbjct:   234 RPYVGQHIADDLQRRLDLLKPKLPNGECPPGFLGFAVNMIQIDPAYLLCVTSYGYGLRET 293

Query:  1494 LLYRLFGKLQVYKTRKDMIEAHTCIRHGAVSLDGGILKEDGIISLGCG---NPTICFPIV 1550
             L Y LF +LQVYKTR DMI A  CI  GAVSLDGGI+++ GI +LG     N     P  
Sbjct:   294 LFYNLFSRLQVYKTRADMISALPCISDGAVSLDGGIIRKTGIFNLGNRDEVNVRFAKPTA 353

Query:  1551 RTRISTQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKF 1600
                +   S EA K+++E K + +  ++ I+      E  +      +++F
Sbjct:   354 SRTMDNYS-EAEKKMKELKWKKEKTLEDIKREQVLREHAVFNFGKKKEEF 402

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006306 "DNA methylation" evidence=RCA;IMP

GO:0031047 "gene silencing by RNA" evidence=RCA;IMP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA

GO:0006261 "DNA-dependent DNA replication" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009555 "pollen development" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016444 "somatic cell DNA recombination" evidence=RCA

GO:0016568 "chromatin modification" evidence=RCA

GO:0016569 "covalent chromatin modification" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0051726 "regulation of cell cycle" evidence=RCA

DICTYBASE\|DDB_G0277185 DDB_G0277185 [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1612
pfam13589		134	pfam13589, HATPase_c_3, Histidine kinase-, DNA gyr	9e-20

>gnl\|CDD\|222246 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Back alignment and domain information

 Score = 86.6 bits (215), Expect = 9e-20
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 26/157 (16%)

Query: 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNI--AEDKISVFDTGPGMDSTDENSIVKW 215
           YT E A+A+LIDNS+ A  TN K     IS++    ED IS+ D G GM       +   
Sbjct: 1   YTLEDAIAELIDNSIDADATNVK-----ISIDPDRGEDGISIEDNGGGM---SYEELRNA 52

Query: 216 GKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTL 275
            K+G S     +               G  G G  +AS+ LGR+  V+SK +   E  TL
Sbjct: 53  LKLGRSSKEGERDS----------TTLGRKGIGMKLASLSLGRKLTVTSKKE--GESSTL 100

Query: 276 HLEKEALMRCSDAELTWRTNGGIRFPSKDEIADSPHG 312
            L+ + + +  + +L   T+       ++ +  + HG
Sbjct: 101 TLDLDDIDKEGEWDLPELTS----AEIEESLDKNSHG 133

This family represents, additionally, the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90. Length = 134

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1612
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	99.78
PF13589		137	HATPase_c_3: Histidine kinase-, DNA gyrase B-, and	99.71
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	99.71
COG0326		623	HtpG Molecular chaperone, HSP90 family [Posttransl	99.71
KOG0996		1293	consensus Structural maintenance of chromosome pro	99.7
PTZ00130		814	heat shock protein 90; Provisional	99.65
PRK05218		613	heat shock protein 90; Provisional	99.63
PRK14083		601	HSP90 family protein; Provisional	99.6
KOG0933		1174	consensus Structural maintenance of chromosome pro	99.59
PTZ00272		701	heat shock protein 83 kDa (Hsp83); Provisional	99.54
KOG0018		1141	consensus Structural maintenance of chromosome pro	99.53
KOG0964		1200	consensus Structural maintenance of chromosome pro	99.47
COG0323		638	MutL DNA mismatch repair enzyme (predicted ATPase)	99.35
PF06470		120	SMC_hinge: SMC proteins Flexible Hinge Domain; Int	99.33
TIGR00585		312	mutl DNA mismatch repair protein MutL. All protein	99.22
PRK00095		617	mutL DNA mismatch repair protein; Reviewed	99.13
KOG0019		656	consensus Molecular chaperone (HSP90 family) [Post	98.98
KOG1979		694	consensus DNA mismatch repair protein - MLH1 famil	98.94
KOG0020		785	consensus Endoplasmic reticulum glucose-regulated	98.78
COG1389		538	DNA topoisomerase VI, subunit B [DNA replication,	98.78
KOG1978		672	consensus DNA mismatch repair protein - MLH2/PMS1/	98.68
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	98.54
KOG1977		1142	consensus DNA mismatch repair protein - MLH3 famil	98.48
PRK14868		795	DNA topoisomerase VI subunit B; Provisional	98.43
PRK04184		535	DNA topoisomerase VI subunit B; Validated	98.35
TIGR01052		488	top6b DNA topoisomerase VI, B subunit. This model	98.27
PRK05559		631	DNA topoisomerase IV subunit B; Reviewed	98.22
TIGR01055		625	parE_Gneg DNA topoisomerase IV, B subunit, proteob	98.15
TIGR01059		654	gyrB DNA gyrase, B subunit. This model describes t	98.15
PRK05644		638	gyrB DNA gyrase subunit B; Validated	98.14
PRK14867		659	DNA topoisomerase VI subunit B; Provisional	98.08
smart00433		594	TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras	98.01
PRK14939		756	gyrB DNA gyrase subunit B; Provisional	97.91
PF02518		111	HATPase_c: Histidine kinase-, DNA gyrase B-, and H	97.73
TIGR01058		637	parE_Gpos DNA topoisomerase IV, B subunit, Gram-po	97.39
PLN03128		1135	DNA topoisomerase 2; Provisional	97.05
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	96.88
PLN03237		1465	DNA topoisomerase 2; Provisional	96.85
COG0187		635	GyrB Type IIA topoisomerase (DNA gyrase/topo II, t	96.63
PTZ00108		1388	DNA topoisomerase 2-like protein; Provisional	96.46
PHA02569		602	39 DNA topoisomerase II large subunit; Provisional	96.41
COG3290		537	CitA Signal transduction histidine kinase regulati	96.38
smart00387		111	HATPase_c Histidine kinase-like ATPases. Histidine	96.37
cd00075		103	HATPase_c Histidine kinase-like ATPases; This fami	96.27
PRK10604		433	sensor protein RstB; Provisional	96.11
PTZ00109		903	DNA gyrase subunit b; Provisional	95.94
PRK10755		356	sensor protein BasS/PmrB; Provisional	95.91
PRK09470		461	cpxA two-component sensor protein; Provisional	95.68
PRK09467		435	envZ osmolarity sensor protein; Provisional	95.67
PRK11006		430	phoR phosphate regulon sensor protein; Provisional	95.65
PRK10364		457	sensor protein ZraS; Provisional	95.54
PRK09303		380	adaptive-response sensory kinase; Validated	95.43
PRK15053		545	dpiB sensor histidine kinase DpiB; Provisional	95.35
TIGR01386		457	cztS_silS_copS heavy metal sensor kinase. Members	95.3
PRK11100		475	sensory histidine kinase CreC; Provisional	95.07
TIGR02916		679	PEP_his_kin putative PEP-CTERM system histidine ki	95.06
PRK10549		466	signal transduction histidine-protein kinase BaeS;	95.0
TIGR02966		333	phoR_proteo phosphate regulon sensor kinase PhoR.	94.8
PRK15347		921	two component system sensor kinase SsrA; Provision	94.65
COG0642		336	BaeS Signal transduction histidine kinase [Signal	94.65
PRK10337		449	sensor protein QseC; Provisional	94.64
TIGR01925		137	spIIAB anti-sigma F factor. This model describes t	94.56
TIGR03785		703	marine_sort_HK proteobacterial dedicated sortase s	94.51
TIGR02938		494	nifL_nitrog nitrogen fixation negative regulator N	94.42
PRK11360		607	sensory histidine kinase AtoS; Provisional	94.29
PRK10815		485	sensor protein PhoQ; Provisional	94.24
PRK11073		348	glnL nitrogen regulation protein NR(II); Provision	94.23
PRK09835		482	sensor kinase CusS; Provisional	94.19
PRK11086		542	sensory histidine kinase DcuS; Provisional	94.15
PF13581		125	HATPase_c_2: Histidine kinase-like ATPase domain	94.04
PRK04069		161	serine-protein kinase RsbW; Provisional	94.03
TIGR02956		968	TMAO_torS TMAO reductase sytem sensor TorS. This p	94.0
PRK11644		495	sensory histidine kinase UhpB; Provisional	93.94
COG4585		365	Signal transduction histidine kinase [Signal trans	93.81
PRK03660		146	anti-sigma F factor; Provisional	93.72
PRK11466		914	hybrid sensory histidine kinase TorS; Provisional	93.67
COG4191		603	Signal transduction histidine kinase regulating C4	93.52
PRK13837		828	two-component VirA-like sensor kinase; Provisional	93.44
PRK10490		895	sensor protein KdpD; Provisional	93.32
PRK10618		894	phosphotransfer intermediate protein in two-compon	93.31
PRK11107		919	hybrid sensory histidine kinase BarA; Provisional	92.7
KOG1845		775	consensus MORC family ATPases [Cell cycle control,	92.3
TIGR01924		159	rsbW_low_gc serine-protein kinase RsbW. This model	92.3
PRK11091		779	aerobic respiration control sensor protein ArcB; P	92.04
PRK10841		924	hybrid sensory kinase in two-component regulatory	91.96
PRK10600		569	nitrate/nitrite sensor protein NarX; Provisional	91.26
PRK10547		670	chemotaxis protein CheA; Provisional	90.9
PRK13560		807	hypothetical protein; Provisional	90.85
smart00634		92	BID_1 Bacterial Ig-like domain (group 1).	90.28
PRK09959		1197	hybrid sensory histidine kinase in two-component r	90.27
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	89.93
COG2205		890	KdpD Osmosensitive K+ channel histidine kinase [Si	89.39
PRK13557		540	histidine kinase; Provisional	89.36
COG2972		456	Predicted signal transduction protein with a C-ter	88.41
COG0643		716	CheA Chemotaxis protein histidine kinase and relat	87.92
KOG0787		414	consensus Dehydrogenase kinase [Signal transductio	86.96
COG2172		146	RsbW Anti-sigma regulatory factor (Ser/Thr protein	86.9
PRK13559		361	hypothetical protein; Provisional	84.15
KOG1845		775	consensus MORC family ATPases [Cell cycle control,	83.22
COG3920		221	Signal transduction histidine kinase [Signal trans	83.12
PRK04863		1486	mukB cell division protein MukB; Provisional	82.76

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

Probab=99.78  E-value=6.3e-19  Score=233.90  Aligned_cols=140  Identities=26%  Similarity=0.403  Sum_probs=119.6

Q ss_pred             CCCceeeecccccccCchHHHHHHHHhccccccEEEEecHHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCceEEEe
Q 000366         1350 MEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVIC 1429 (1612)
Q Consensus      1350 ~~gV~GvVa~L~~V~d~~ls~als~~lg~~~m~~VV~~t~~~ak~le~Yl~e~~i~~~~~~~~~~~s~~~~~~GR~tfLp 1429 (1612)
                      ++||+|.|++|++|+ ++|..||+.++|++ ++.||+.|...|+.+..|+++                  ...||+||||
T Consensus       514 ~~Gv~G~v~~li~v~-~~y~~Aie~alG~~-l~~vVV~~~~~a~~~i~~lk~------------------~~~gr~tflp  573 (1163)
T COG1196         514 LPGVYGPVAELIKVK-EKYETALEAALGNR-LQAVVVENEEVAKKAIEFLKE------------------NKAGRATFLP  573 (1163)
T ss_pred             CCCccchHHHhcCcC-hHHHHHHHHHcccc-cCCeeeCChHHHHHHHHHHhh------------------cCCCccccCc
Confidence            899999999999997 49999999999984 999999999999999999944                  4599999999


Q ss_pred             cCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEEeeecccccccccccccccCCCchhhHHHHhhccceeeccHH
Q 000366         1430 LEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK 1509 (1612)
Q Consensus      1430 Ld~Irp~~~~~~~~dpq~~L~l~~p~l~~g~~p~GfigyAvNLI~~d~~~~~~~t~~g~gLRetlf~~lFg~t~Vy~T~~ 1509 (1612)
                      |+.|+++...              +..  .  .+||+|||+|+|+||++|.            .+|+++||+|.|++   
T Consensus       574 l~~i~~~~~~--------------~~~--~--~~g~~~~a~dli~~d~~~~------------~~~~~~l~~t~Iv~---  620 (1163)
T COG1196         574 LDRIKPLRSL--------------KSD--A--APGFLGLASDLIDFDPKYE------------PAVRFVLGDTLVVD---  620 (1163)
T ss_pred             hhhhcccccc--------------ccc--c--ccchhHHHHHHhcCCHHHH------------HHHHHHhCCeEEec---
Confidence            9999985432              111  1  5899999999999999996            79999999999975   


Q ss_pred             hHHHHHhhccC-----ceEEecCCeeeccceEEeccCC
Q 000366         1510 DMIEAHTCIRH-----GAVSLDGGILKEDGIISLGCGN 1542 (1612)
Q Consensus      1510 ~m~~A~~~i~~-----~~VTLDG~lie~sG~~tgG~~~ 1542 (1612)
                      +++.|+.++..     .+|||||++++++|+||||++.
T Consensus       621 ~l~~A~~l~~~~~~~~riVTl~G~~~~~~G~~tGG~~~  658 (1163)
T COG1196         621 DLEQARRLARKLRIKYRIVTLDGDLVEPSGSITGGSRN  658 (1163)
T ss_pred             CHHHHHHHHHhcCCCceEEecCCcEEeCCeeeecCCcc
Confidence            56667766433     3999999999999999999554

>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PTZ00130 heat shock protein 90; Provisional	Back alignment and domain information

>PRK05218 heat shock protein 90; Provisional	Back alignment and domain information

>PRK14083 HSP90 family protein; Provisional	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional	Back alignment and domain information

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]	Back alignment and domain information

>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins	Back alignment and domain information

>TIGR00585 mutl DNA mismatch repair protein MutL	Back alignment and domain information

>PRK00095 mutL DNA mismatch repair protein; Reviewed	Back alignment and domain information

>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]	Back alignment and domain information

>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]	Back alignment and domain information

>PRK14868 DNA topoisomerase VI subunit B; Provisional	Back alignment and domain information

>PRK04184 DNA topoisomerase VI subunit B; Validated	Back alignment and domain information

>TIGR01052 top6b DNA topoisomerase VI, B subunit	Back alignment and domain information

>PRK05559 DNA topoisomerase IV subunit B; Reviewed	Back alignment and domain information

>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial	Back alignment and domain information

>TIGR01059 gyrB DNA gyrase, B subunit	Back alignment and domain information

>PRK05644 gyrB DNA gyrase subunit B; Validated	Back alignment and domain information

>PRK14867 DNA topoisomerase VI subunit B; Provisional	Back alignment and domain information

>smart00433 TOP2c TopoisomeraseII	Back alignment and domain information

>PRK14939 gyrB DNA gyrase subunit B; Provisional	Back alignment and domain information

>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins	Back alignment and domain information

>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive	Back alignment and domain information

>PLN03128 DNA topoisomerase 2; Provisional	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>PLN03237 DNA topoisomerase 2; Provisional	Back alignment and domain information

>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]	Back alignment and domain information

>PTZ00108 DNA topoisomerase 2-like protein; Provisional	Back alignment and domain information

>PHA02569 39 DNA topoisomerase II large subunit; Provisional	Back alignment and domain information

>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]	Back alignment and domain information

>smart00387 HATPase_c Histidine kinase-like ATPases	Back alignment and domain information

>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins	Back alignment and domain information

>PRK10604 sensor protein RstB; Provisional	Back alignment and domain information

>PTZ00109 DNA gyrase subunit b; Provisional	Back alignment and domain information

>PRK10755 sensor protein BasS/PmrB; Provisional	Back alignment and domain information

>PRK09470 cpxA two-component sensor protein; Provisional	Back alignment and domain information

>PRK09467 envZ osmolarity sensor protein; Provisional	Back alignment and domain information

>PRK11006 phoR phosphate regulon sensor protein; Provisional	Back alignment and domain information

>PRK10364 sensor protein ZraS; Provisional	Back alignment and domain information

>PRK09303 adaptive-response sensory kinase; Validated	Back alignment and domain information

>PRK15053 dpiB sensor histidine kinase DpiB; Provisional	Back alignment and domain information

>TIGR01386 cztS_silS_copS heavy metal sensor kinase	Back alignment and domain information

>PRK11100 sensory histidine kinase CreC; Provisional	Back alignment and domain information

>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase	Back alignment and domain information

>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional	Back alignment and domain information

>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR	Back alignment and domain information

>PRK15347 two component system sensor kinase SsrA; Provisional	Back alignment and domain information

>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK10337 sensor protein QseC; Provisional	Back alignment and domain information

>TIGR01925 spIIAB anti-sigma F factor	Back alignment and domain information

>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase	Back alignment and domain information

>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL	Back alignment and domain information

>PRK11360 sensory histidine kinase AtoS; Provisional	Back alignment and domain information

>PRK10815 sensor protein PhoQ; Provisional	Back alignment and domain information

>PRK11073 glnL nitrogen regulation protein NR(II); Provisional	Back alignment and domain information

>PRK09835 sensor kinase CusS; Provisional	Back alignment and domain information

>PRK11086 sensory histidine kinase DcuS; Provisional	Back alignment and domain information

>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain	Back alignment and domain information

>PRK04069 serine-protein kinase RsbW; Provisional	Back alignment and domain information

>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS	Back alignment and domain information

>PRK11644 sensory histidine kinase UhpB; Provisional	Back alignment and domain information

>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK03660 anti-sigma F factor; Provisional	Back alignment and domain information

>PRK11466 hybrid sensory histidine kinase TorS; Provisional	Back alignment and domain information

>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	Back alignment and domain information

>PRK13837 two-component VirA-like sensor kinase; Provisional	Back alignment and domain information

>PRK10490 sensor protein KdpD; Provisional	Back alignment and domain information

>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional	Back alignment and domain information

>PRK11107 hybrid sensory histidine kinase BarA; Provisional	Back alignment and domain information

>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>TIGR01924 rsbW_low_gc serine-protein kinase RsbW	Back alignment and domain information

>PRK11091 aerobic respiration control sensor protein ArcB; Provisional	Back alignment and domain information

>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional	Back alignment and domain information

>PRK10600 nitrate/nitrite sensor protein NarX; Provisional	Back alignment and domain information

>PRK10547 chemotaxis protein CheA; Provisional	Back alignment and domain information

>PRK13560 hypothetical protein; Provisional	Back alignment and domain information

>smart00634 BID_1 Bacterial Ig-like domain (group 1)	Back alignment and domain information

>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK13557 histidine kinase; Provisional	Back alignment and domain information

>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	Back alignment and domain information

>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]	Back alignment and domain information

>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]	Back alignment and domain information

>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]	Back alignment and domain information

>PRK13559 hypothetical protein; Provisional	Back alignment and domain information

>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1612
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 68.7 bits (167), Expect = 1e-11
 Identities = 79/604 (13%), Positives = 184/604 (30%), Gaps = 182/604 (30%)

Query: 99  YVEDANLNKISDTINFEMFEPSKC-HILKLYDGSGEIAKTFENMWDLTPDTDLLRELPED 157
           +V++ +   + D     +    +  HI+   D    ++ T    W        L    E+
Sbjct: 29  FVDNFDCKDVQDMPK-SILSKEEIDHIIMSKD---AVSGTLRLFW-------TLLSKQEE 77

Query: 158 YTFETALADLIDNSLQAVWTNAKNERR---LISVNIAEDKISVFDTGPGMDSTDENSIVK 214
              +  + +++  + + + +  K E+R   +++    E +  +++        + + +  
Sbjct: 78  -MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136

Query: 215 WGKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSS-------KTK 267
           + K+  +L     A+ +           G+ G          G+  +          + K
Sbjct: 137 YLKLRQALLELRPAKNVL--------IDGVLGS---------GKTWVALDVCLSYKVQCK 179

Query: 268 VSKEVYTLHL----EKEALMR-----CS--DAELTWRTNGGIRFPSKDE---------IA 307
           +  +++ L+L      E ++          D   T R++       +           + 
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 308 DSPHGSFTKV--EIWEPK-LKSLDVKPLGCKL------KDIYFPYIQCDEISSTGKTTRP 358
             P+ +   V   +   K   + +   L CK+      K +       D +S+   T   
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFN---LSCKILLTTRFKQVT------DFLSAATTTHIS 290

Query: 359 IEFQVNGIDLAEVAGGEVAITNMHSCNGPDFILQLHFSLRQASATTNSP------GSVCS 412
           ++     +   EV    +   +    + P          R+   T  +P           
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLP----------REVLTT--NPRRLSIIAESIR 338

Query: 413 FFLLLW----------LAMAYHLSSKC-----------RLRIIPFPKNWNLSGSRPSKEA 451
             L  W          L      S              RL +  FP + ++    P+   
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--FPPSAHI----PTI-- 390

Query: 452 NARLKFVYFPVTEEGESIDIIMNKLISEGCVAAANYDTRSRVSIRRLGRLLPDVHWAWLP 511
              L  ++F V +    + +++NKL     V     ++            +P ++     
Sbjct: 391 --LLSLIWFDVIK--SDVMVVVNKLHKYSLVEKQPKESTIS---------IPSIY----- 432

Query: 512 LMDLRQRKGEKAHLLKKF--CLRVKCFIDTDAGFNPTPSKTD------LAH--------- 554
            ++L+ +   +  L +       +    D+D   +  P   D      + H         
Sbjct: 433 -LELKVKLENEYALHRSIVDHYNIPKTFDSD---DLIPPYLDQYFYSHIGHHLKNIEHPE 488

Query: 555 -QNLYTIALKNFGAKTFKEEKDVTVEIRRDGKLL--------TPIQLEKDYQEWLLNMHD 605
              L+ +   +F    F E+K     IR D            T  QL+  Y+ ++ +   
Sbjct: 489 RMTLFRMVFLDFR---FLEQK-----IRHDSTAWNASGSILNTLQQLKF-YKPYICDNDP 539

Query: 606 HYDA 609
            Y+ 
Sbjct: 540 KYER 543

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1612
d1gxja_		161	Smc hinge domain {Thermotoga maritima [TaxId: 2336	99.81
d2iwxa1		213	HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T	99.71
d2gqpa1		227	HSP90 {Dog (Canis familiaris) [TaxId: 9615]}	99.69
d1uyla_		208	HSP90 {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1b63a2		218	DNA mismatch repair protein MutL {Escherichia coli	99.62
d1h7sa2		203	DNA mismatch repair protein PMS2 {Human (Homo sapi	99.6
d2hkja3		219	Topoisomerase VI-B subunit {Archaeon Sulfolobus sh	99.19
d1pvga2		239	DNA topoisomerase II {Baker's yeast (Saccharomyces	98.15
d1ei1a2		219	DNA gyrase B {Escherichia coli [TaxId: 562]}	97.89
d1kija2		212	DNA gyrase B {Thermus thermophilus [TaxId: 274]}	97.71
d1gkza2		193	Branched-chain alpha-ketoacid dehydrogenase kinase	97.58
d2c2aa2		161	Sensor histidine kinase TM0853 {Thermotoga maritim	97.55
d1bxda_		161	Histidine kinase domain of the osmosensor EnvZ {Es	97.51
d1jm6a2		190	Pyruvate dehydrogenase kinase {Rat (Rattus norvegi	97.45
d1id0a_		146	Histidine kinase PhoQ domain {Escherichia coli [Ta	97.4
d1ysra1		148	Sensor-type histidine kinase PrrB {Mycobacterium t	97.24
d1th8a_		139	Anti-sigma factor spoIIab {Bacillus stearothermoph	97.1
d1s14a_		168	Topoisomerase IV subunit B {Escherichia coli [TaxI	96.72
d1y8oa2		125	Pyruvate dehydrogenase kinase {Human (Homo sapiens	96.52
d1ixma_		179	Sporulation response regulatory protein Spo0B {Bac	96.3
d1r62a_		156	Nitrogen regulation protein NtrB, C-terminal domai	95.55

>d1gxja_ d.215.1.1 (A:) Smc hinge domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Smc hinge domain
superfamily: Smc hinge domain
family: Smc hinge domain
domain: Smc hinge domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.81  E-value=1.4e-19  Score=154.19  Aligned_cols=142  Identities=27%  Similarity=0.347  Sum_probs=117.9

Q ss_pred             CCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCEEEE
Q ss_conf             88870240021212267448899999833255237998028889999986411885200101355520275447704898
Q 000366         1349 FMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVI 1428 (1612)
Q Consensus      1349 ~~~gV~GvVa~L~~V~d~~ls~aLs~~lg~~~m~~VV~~t~~~ak~le~Yl~~~~i~~~~~~~~~~~s~~~~~~GR~tfL 1428 (1612)
                      ..+||+|.|++|+.| ++.|..|++++||. .+++||++|.+.|+.+..|+++.+                  .||++|+
T Consensus        15 ~~~gv~G~v~dli~v-~~~y~~Ave~aLG~-~l~~vVV~~~~~A~~~i~~lk~~~------------------~Gr~tfi   74 (161)
T d1gxja_          15 RFPGLVDVVSNLIEV-DEKYSLAVSVLLGG-TAQNIVVRNVDTAKAIVEFLKQNE------------------AGRVTIL   74 (161)
T ss_dssp             GCTTEEEEHHHHCBC-CGGGHHHHHHHHGG-GGGCEEESSHHHHHHHHHHHHHHT------------------CCCEEEE
T ss_pred             CCCCCEEEHHHHCCC-CHHHHHHHHHHHHH-HHCEEEECCHHHHHHHHHHHHHCC------------------CCEEEEE
T ss_conf             279955878882760-88799999999636-540599787999999999974325------------------8618999


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEECCH
Q ss_conf             52797888999999992111369999999999898850776321113643321112358871034899760252300118
Q 000366         1429 CLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTR 1508 (1612)
Q Consensus      1429 pLd~Irp~~~~~~~~dpq~~L~l~~p~l~~g~~p~GfigyAvNLI~~d~~~~~~~t~~g~gLRetlf~~lFg~t~Vy~Tr 1508 (1612)
                      |||.+.+....             .+.+   ...+|++++|.|+|+|++++.            .++.++|+++.|+++.
T Consensus        75 pl~~i~~~~~~-------------~~~~---~~~~~~v~~~~dlV~~~~~~~------------~~~~~llg~~~iv~~l  126 (161)
T d1gxja_          75 PLDLIDGSFNR-------------ISGL---ENERGFVGYAVDLVKFPSDLE------------VLGGFLFGNSVVVETL  126 (161)
T ss_dssp             ETTTCCCCCCC-------------CTTG---GGSTTEEEEHHHHCBCCGGGH------------HHHHHHHTTCEEESCH
T ss_pred             ECCCCCCCCCC-------------CCCC---CCCCCCCHHHHHHCCCCHHHH------------HHHHHHCCCEEEECCH
T ss_conf             65543465321-------------1100---037773332887433888899------------9999985998999999


Q ss_pred             HHHHHHHHH-----CCCCEEEECCCEEECCCEEEECCC
Q ss_conf             869999740-----258469920880202650871469
Q 000366         1509 KDMIEAHTC-----IRHGAVSLDGGILKEDGIISLGCG 1541 (1612)
Q Consensus      1509 ~~m~~A~~~-----i~~~~VTLDG~lie~sG~~tgG~~ 1541 (1612)
                      ++   |+.+     ++-.+||+|||+++++|.|+||..
T Consensus       127 ~~---A~~l~~~~~~~~~~VT~dGd~~~~~G~i~GG~~  161 (161)
T d1gxja_         127 DD---AIRMKKKYRLNTRIATLDGELISGRGAITGGRE  161 (161)
T ss_dssp             HH---HHHHHHHHTCCSCEEETTSCEECTTSCEEEEEC
T ss_pred             HH---HHHHHHHCCCCCEEEECCCCEECCCEEEECCCC
T ss_conf             99---999998649997599699838989866837999

PyMOL of d1gxja_

>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]}	Back information, alignment and structure

>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]}	Back information, alignment and structure

>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]}	Back information, alignment and structure

>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure