Citrus Sinensis ID: 000395

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------
MATDISAKPEASNPCCRVWEDKYKKSQGNRTALRQALKLFEQQLDKIQAENLSLKKACQEEKACAEVEKKGREEVSAAKVSLENEISALKSEISILQRKKGGSNAQSIEEVKLLDIRVTENEREIKRLKGEVEKEKIRAESEKKNAEVEKKRAAEAWKCVEAEKGKAEEERRRANIEGKKAEEYKLQLEALRKEAVDAKSKLVLESSKLGDMTKKLESEKQKVSKEKKRANNEGKKAEEYIIQLEALRKEAGDAKLMLVSEASKSEAVSKKLEAEKQMVCKERQRANIEGKKAEEYRLQLEALRREADDAKSMLGSEASKSEALRKKLEAEKQMLSKEREHAHLEMAKAEDQRKLAEASRKQAEEEKCHAERLSQQLEEAGQRIVELQKETNDLVSGHSVETHGCKPDTDAGFLKMKNGSKVNTLQKVGEEPNLSLEIMKFEEASRRCGVDKEKSVGGKELSDLEMIKPQEHRKVVQGKCLAADHLSQQLEEARGRIDELQKQIHDLHSSRKSFDASAIQVDKYVDSGKAKLLKKQLKFEKMQVKHAKQVAKLEKDRNIILHQELGRLKVDFAQFLHRLDTVDQCFSSNTEGTDNLGNVKVRDTTNMQILKLKESLPVRMYLQSENELQKHCCTGVAASSPLRQTIQQIAPSLALSGGICSESMSGIDSKDPKLESLLGGSSRKMFQSSAINSSSASFSDRQLMGSQERGAFSFTTSSKLMNAQATNSSMSDEINRVRFDGKPAVDAEISVRSPLKIGAAGKVNGPSRKRKRLLHTVESIELLHSEDRKLHLQIEEKLSDLHNILNKQLDKTLEEANYTVANNQDAFKHDQFPKKRRVSQEENLGIQHSCDSGEMNKTANLDAKVHEKTLGPANDLIGTAQACTEGITDTVISRHETMMNFEEFADGDYMKLLDLDNPADEECYRAAMEFPLSPTLPEIEFQALETFDINKFEPLAEETFYGGLSKEKENSVPSCSYDVIDVEINSNKLNYNVSRNSHNSLPCESEGPLDSFGVEVNSGNISLSAKQAGKACDNQALEKLLISDKCRSGDQGGEFPLASELGPAHDNIPRYFVVLSNIKDESSISRIYCATKSCMAQCSLVSQTEWILQKIMLALKMEEHLLSKERACVFLSLLLLNFSTIAEEKSRKSWNSDIILCLDSFASHFNAVMSDAEARRVFDELCLDELLSLIEDFLMEGKVMTCTDLSSETLSESNSKINILLDGVDTTWSSEAASASQLMAGSIILASIATATDCIGFICGASYNIFRKHTSDPSLVLMILHIFAYLGGEKIFTSGKYDLTMTVLKSIVMSLERGCSSVAANSSISLADEIQSKFHPCAECPFSKDAVSVEIVMSLLLEKLQSCAEARTVNVLFHNDQAEQTCQKPYCPLDINCGTSGSLNECKMSALQSKSVVNTTLCHVTDVLSLVELLSCIMSWDWTLSTVVPGLLRMLELPIAESFTFAIVILLGQIGRLGVAACGCEDKNVENLSNTLSAFLWHETTTRAGLPLQIAIVTALLGLISVDLGQVIEINSMCPSIASQSAVAGAIRKWFSSLSKEHQALSFSLFQSSALGPNVR
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcHHHHHccccccccccccccccHHHHHHHccccHHHcccHHHHHccccccHHHHHHHHHHccccccccHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHcccHHHHHcccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccccHHHHHHHHHHHHHccccccccHHHHHcHHHHHHHHHcccccccccHHHccccccHHHHHcHHHccccHHHHHHcccHHcccccccccHHHHHHHHcccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHcHHHHHHHHHHHHcHHHHHHHHHHHcHHHHHHHHHHHHHccEEEEEccccccccccccccccccccccccEEEccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccccccccHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccHHHHHHHccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHcccccccc
cccHccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccHcHHHHHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcccccccccHHHHHHHcHHHHHHHHHHHccccHHHcccccccccccccccccccHHHHHHHHHHHccccccccccccccccHHHHcccccEEEEcccccHHHHHHHHHHHccccccccEEcccccEcccccccccccHHHHccccccccccccccccccEEEEEEcccHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccEEEccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHcccccHHHHccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEcccHHHHHHHHHHcHHHHHHHHHHccHHHHHHHHHHHHHcccEEEEcccccccccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHccEEEEEcHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHcccccccccccEEEccccccccccccccccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHHccHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccHHHHHHccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHccccccccc
matdisakpeasnpccrvwedkykksqGNRTALRQALKLFEQQLDKIQAENLSLKKACQEEKACAEVEKKGREEVSAAKVSLENEISALKSEISILQrkkggsnaqsiEEVKLLDIRVTENEREIKRLKGEVEKEKIRAESEKKNAEVEKKRAAEAWKCVEAEKGKAEEERRRANIEGKKAEEYKLQLEALRKEAVDAKSKLVLESSKLGDMTKKLESEKQKVSKEKKRANNEGKKAEEYIIQLEALRKEAGDAKLMLVSEASKSEAVSKKLEAEKQMVCKERQRANIEGKKAEEYRLQLEALRREADDAKsmlgseasKSEALRKKLEAEKQMLSKEREHAHLEMAKAEDQRKLAEASRKQAEEEKCHAERLSQQLEEAGQRIVELQKETndlvsghsvethgckpdtdagflkmkngskvntlqkvgeepnlsleIMKFEeasrrcgvdkeksvggkelsdlemikpqehrkvvqgkclaADHLSQQLEEARGRIDELQKQIHDLHssrksfdasAIQVDKYVDSGKAKLLKKQLKFEKMQVKHAKQVAKLEKDRNIILHQELGRLKVDFAQFLHRldtvdqcfssntegtdnlgnvkvrdttNMQILKLKESLPVRMYLQSENELqkhcctgvaassplrQTIQQIAPslalsggicsesmsgidskdpklesllggssrkmfqssainsssasfsdrqlmgsqergafsfttssklmnaqatnssmsdeinrvrfdgkpavdaeisvrsplkigaagkvngpsrkrkRLLHTVESIELLHSEDRKLHLQIEEKLSDLHNILNKQLDKTLEEANYTvannqdafkhdqfpkkrrvsqeenlgiqhscdsgemnktanLDAKVHEktlgpandligtaqactEGITDTVISRHETmmnfeefadgdymklldldnpadeECYRAamefplsptlpeiefqaletfdinkfeplaeetfygglskekensvpscsydvidveinsnklnynvsrnshnslpcesegpldsfgvevnsgnislSAKQAGKACDNQALEKLLIsdkcrsgdqggefplaselgpahdnipRYFVVLSnikdessiSRIYCATKSCMAQCSLVSQTEWILQKIMLALKMEEHLLSKERACVFLSLLLLNFSTIAEEKSRKSWNSDIILCLDSFASHFNAVMSDAEARRVFDELCLDELLSLIEDFLMegkvmtctdlssetlsesnsKINILLDGVDTTWSSEAASASQLMAGSIILASIATATDCIGFICGASynifrkhtsdpsLVLMILHIFAYLggekiftsgkydLTMTVLKSIVMSLERGCssvaanssisladeiqskfhpcaecpfskdaVSVEIVMSLLLEKLQSCAEArtvnvlfhndqaeqtcqkpycpldincgtsgslneckmsALQSKSVVNTTLCHVTDVLSLVELLSCIMSWDWTLSTVVPGLLRmlelpiaesFTFAIVILLGQIGrlgvaacgcedknvenLSNTLSAFLWHetttraglPLQIAIVTALLGLISVDLGQVIeinsmcpsiasQSAVAGAIRKWFSSLSKEHQALSFslfqssalgpnvr
matdisakpeasnpccrvwedkykksqGNRTALRQALKLFEQQLDKIQAENLSLKKACQEEKACAEVEKKGREEVSAAKVSLENEISALKSEISilqrkkggsnaqsieevklldirvtenereikrlkgevekekiraesekknaevekkraaeawkcveaekgkaeeerrraniegkkaeeYKLQLEALRKEAVDAKSKlvlessklgdmtkklesekqkvskekkrannegkkaeeYIIQLEALRKEAGDAKLMLVSEASKSEAVSKKLEAEKQMVCkerqraniegkkaeEYRLQLEALRREADdaksmlgseasksealRKKLEAEKQMLSKEREHAhlemakaedQRKLAEASRKQAEEEKCHAERLSQQLEEAGQRIVELQKETNDLVSGHSVETHGCKPDTDAGFLKMKNGSKVntlqkvgeepnlsleimkfeeasrrcgvdkeksvggkelsdlemikpqEHRKVVQGKCLAADHLSQQLEEARGRIDELQKQIHDLhssrksfdasaiQVDKYVDSGKAKLLKKQLKFEKMQVKHAkqvaklekdRNIILHQELGRLKVDFAQFLHRLDTVdqcfssntegtdnlgnvkvrdtTNMQILKLKESLPVRMYLQSENELQKHCCTGVAASSPLRQTIQQIAPSLALSGGICSESMSGIDSKDPKLESLLGGSSRKMFQSSAINSSSASFSDRQLMGSQERGAFSFTTSSKLMNAQatnssmsdeiNRVRFDGKPAVdaeisvrsplkigaagkvngpsrkrkRLLHTVESIELLHSEDRKLHLQIEEKLSDLHNILNKQLDKTLEEANYTVANnqdafkhdqfpkKRRVSQEENLgiqhscdsgemNKTANLDAKVHEKTLGPANDLIGTAQACTEGITDTVISRHETMMNFEEFADGDYMKLLDLDNPADEECYRAAMEFPLSPTLPEIEFQALETFDINKFEPLAEETFYGglskekensvPSCSYDVIDVEINSNKLNYNVSRNSHNSLPCESEGPLDSFGVEVNSGNISLSAKQAGKACDNQALEKLLISDKCRSGDQGGEFplaselgpahDNIPRYFVVLSNIKDESSISRIYCATKSCMAQCSLVSQTEWILQKIMLALKMEEHLLSKERACVFLSLLLLNFSTIAEEKSRKSWNSDIILCLDSFASHFNAVMSDAEARRVFDELCLDELLSLIEDFLMEGKVMTCTDLSSETLSESNSKINILLDGVDTTWSSEAASASQLMAGSIILASIATATDCIGFICGASYNIFRKHTSDPSLVLMILHIFAYLGGEKIFTSGKYDLTMTVLKSIVMSLERGCSSVAANSSISLADEIQSKFHPCAECPFSKDAVSVEIVMSLLLEKLQSCAEARTVNVLFHNDQAEQTCQKPYCPLDINCGTSGSLNECKMSALQSKSVVNTTLCHVTDVLSLVELLSCIMSWDWTLSTVVPGLLRMLELPIAESFTFAIVILLGQIGRLGVAACGCEDKNVENLSNTLSAFLWHETTTRAGLPLQIAIVTALLGLISVDLGQVIEINSMCPSIASQSAVAGAIRKWFSSLSKEHQALsfslfqssalgpnvr
MATDISAKPEASNPCCRVWEDKYKKSQGNRTALRQALKLFEQQLDKIQAENLSLKKACQEEKACAEVEKKGREEVSAAKVSLENEISALKSEISILQRKKGGSNAQSIEEVKLLDIRVTENEREIKRLKGEVEKEKIRAESEKKNAEVEKKRAAEAWKCVeaekgkaeeerrraNIEGKKAEEYKLQLEALRKEAVDAKSKLVLESSKLGDMTkklesekqkvskekkRANNEGKKAEEYIIQLEALRKEAGDAKLMlvseaskseavskkleaekQMVCKERQRANIEGKKAEEYRLQLEALRREADDAKSMLGSEASKSEALRKKLEAEKQMLSKEREHAHLEMAKAEDQRKLAEASRKQAEEEKCHAERLSQQLEEAGQRIVELQKETNDLVSGHSVETHGCKPDTDAGFLKMKNGSKVNTLQKVGEEPNLSLEIMKFEEASRRCGVDKEKSVGGKELSDLEMIKPQEHRKVVQGKCLAADHLSQQLEEARGRIDELQKQIHDLHSSRKSFDASAIQVDKYVDSGKAKLLKKQLKFEKMQVKHAKQVAKLEKDRNIILHQELGRLKVDFAQFLHRLDTVDQCFSSNTEGTDNLGNVKVRDTTNMQILKLKESLPVRMYLQSENELQKHCCTGVAASSPLRQTIQQIAPSLALSGGICSESMSGIDSKDPKLESLLGGSSRKMFQssainsssasfsDRQLMGSQERGAFSFTTSSKLMNAQATNSSMSDEINRVRFDGKPAVDAEISVRSPLKIGAAGKVNGPSRKRKRLLHTVESIELLHSEDRKLHLQIEEKLSDLHNILNKQLDKTLEEANYTVANNQDAFKHDQFPKKRRVSQEENLGIQHSCDSGEMNKTANLDAKVHEKTLGPANDLIGTAQACTEGITDTVISRHETMMNFEEFADGDYMKLLDLDNPADEECYRAAMEFPLSPTLPEIEFQALETFDINKFEPLAEETFYGGLSKEKENSVPSCSYDVIDVEINSNKLNYNVSRNSHNSLPCESEGPLDSFGVEVNSGNISLSAKQAGKACDNQALEKLLISDKCRSGDQGGEFPLASELGPAHDNIPRYFVVLSNIKDESSISRIYCATKSCMAQCSLVSQTEWILQKIMLALKMEEHLLSKERACVFLSLLLLNFSTIAEEKSRKSWNSDIILCLDSFASHFNAVMSDAEARRVFDELCLDELLSLIEDFLMEGKVMTCTDLSSETLSESNSKINILLDGVDTTWSSEAASASQLMAGSIILASIATATDCIGFICGASYNIFRKHTSDPSLVLMILHIFAYLGGEKIFTSGKYDLTMTVLKSIVMSLERGCSSVAANSSISLADEIQSKFHPCAECPFSKDAVSVEIVMSLLLEKLQSCAEARTVNVLFHNDQAEQTCQKPYCPLDINCGTSGSLNECKMSALQSKSVVNTTLCHVTDVLSLVELLSCIMSWDWTLSTVVPGLLRMLELPIAESFTFAIVILLGQIGRLGVAACGCEDKNVENLSNTLSAFLWHETTTRAGLPLQIAIVTALLGLISVDLGQVIEINSMCPSIASQSAVAGAIRKWFSSLSKEHqalsfslfqssalGPNVR
**************CCRVWEDK************QALKLFE******************************************************************************************************************************************************************************************************YIIQL*******************************************************************************************************************************************************************************************************************************************C**************************************IQVDKYVDSGKAKLLKKQLKFEKMQVKHAKQVAKLEKDRNIILHQELGRLKVDFAQFLHRLDTVDQCFSSNTEGTDNLGNVKVRDTTNMQILKLKESLPVRMYLQSENELQKHCCTGVAASSPLRQTIQQIAPSLAL**********************************************************************************************************************LHTVESIELLHS**RKLHLQIEEKLSDLHNILNKQLDKTL**ANYT***************************************************GPANDLIGTAQACTEGITDTVISRHETMMNFEEFADGDYMKLLDLDNPADEECYRAAMEFPLSPTLPEIEFQALETFDINKFEPLAEETFYGGLS******VPSCSYDVIDVEINSNKLNY***********************************************KLLI******************LGPAHDNIPRYFVVLSNIKDESSISRIYCATKSCMAQCSLVSQTEWILQKIMLALKMEEHLLSKERACVFLSLLLLNFSTIAEEKSRKSWNSDIILCLDSFASHFNAVMSDAEARRVFDELCLDELLSLIEDFLMEGKVMTCTDLS*********KINILLDGVDTTWSSEAASASQLMAGSIILASIATATDCIGFICGASYNIFRKHTSDPSLVLMILHIFAYLGGEKIFTSGKYDLTMTVLKSIVMSLERGCSSVAANSSISLADEIQSKFHPCAECPFSKDAVSVEIVMSLLLEKLQSCAEARTVNVLFHNDQAEQTCQKPYCPLDINCGTSGSLNECKMSALQSKSVVNTTLCHVTDVLSLVELLSCIMSWDWTLSTVVPGLLRMLELPIAESFTFAIVILLGQIGRLGVAACGCEDKNVENLSNTLSAFLWHETTTRAGLPLQIAIVTALLGLISVDLGQVIEINSMCPSIASQSAVAGAIRKWFSSLS*********************
******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************GDYMKLLDLDNPADEECY***********************************************VPSCSYDVIDVEINSNKL***********************GVEVNSGNISLSA****************************************DNIPRYFVVLSNIKDESSISRIYCATKSCMAQCSLVSQTEWILQKIMLALKMEEHLLSKERACVFLSLLLLNFSTIAEEKSRKSWNSDIILCLDSFASHFNAVMSDAEARRVFDELCLDELLSLIEDFLMEGKVMTCTDLSSE*****NSKINILLDGVDTTWSSEAASASQLMAGSIILASIATATDCIGFICGASYNIFRKHTSDPSLVLMILHIFAYLGGEKIFTSGKYDLTMTVLKSIVMSLERGCSS**************SKFHPCAECPFSKDAVSVEIVMSLLLEKLQSCAEARTVNVL********************CGTSGSLNECKMSALQSKSVVNTTLCHVTDVLSLVELLSCIMSWDWTLSTVVPGLLRMLELPIAESFTFAIVILLGQIGRLGVAACGCEDKNVENLSNTLSAFLWHETTTRAGLPLQIAIVTALLGLISVDLGQVIEINSMCPSIASQSAVAGAIRKWFSSLSKEHQALSFSLFQSSALGP***
************NPCCRVWEDKYKKSQGNRTALRQALKLFEQQLDKIQAENLSLKKAC********************KVSLENEISALKSEISIL*********QSIEEVKLLDIRVTENEREIKRLKGEV**********************EAWKCVEA***********ANIEGKKAEEYKLQLEALRKEAVDAKSKLVLESSKLGDMTK********************KKAEEYIIQLEALRKEAGDAKLMLVS***********LEAEKQMVCKERQRANIEGKKAEEYRLQLEALRREA****************LRKKLEAEKQMLSKEREHAHLE***************************LSQQLEEAGQRIVELQKETNDLVSGHSVETHGCKPDTDAGFLKMKNGSKVNTLQKVGEEPNLSLEIMKFEEASRRCGVDKEKSVGGKELSDLEMIKPQEHRKVVQGKCLAADHLSQQLEEARGRIDELQKQIHDLHSSRKSFDASAIQVDKYVDSGKAKLLKKQLKFEKMQVKHAKQVAKLEKDRNIILHQELGRLKVDFAQFLHRLDTVDQCFSSNTEGTDNLGNVKVRDTTNMQILKLKESLPVRMYLQSENELQKHCCTGVAASSPLRQTIQQIAPSLALSGGICSESMSGIDSKDPKLESLLGGSSRKM*******************GSQERGAFSFTTSSKLMNAQATNSSMSDEINRVRFDGKPAVDAEISVRSPLKIGAAGKVNGPSRKRKRLLHTVESIELLHSEDRKLHLQIEEKLSDLHNILNKQLDKTLEEANYTVANNQDAFKHDQFPKKRRVSQEENLGIQHSCDSGEMNKTANLDAKVHEKTLGPANDLIGTAQACTEGITDTVISRHETMMNFEEFADGDYMKLLDLDNPADEECYRAAMEFPLSPTLPEIEFQALETFDINKFEPLAEETFYGGLSKEKENSVPSCSYDVIDVEINSNKLNYNVSRNSHNSLPCESEGPLDSFGVEVNSGNISLSAKQAGKACDNQALEKLLISDKCRSGDQGGEFPLASELGPAHDNIPRYFVVLSNIKDESSISRIYCATKSCMAQCSLVSQTEWILQKIMLALKMEEHLLSKERACVFLSLLLLNFSTIAEEKSRKSWNSDIILCLDSFASHFNAVMSDAEARRVFDELCLDELLSLIEDFLMEGKVMTCTDLSSETLSESNSKINILLDGVDTTWSSEAASASQLMAGSIILASIATATDCIGFICGASYNIFRKHTSDPSLVLMILHIFAYLGGEKIFTSGKYDLTMTVLKSIVMSLERGCSSVAANSSISLADEIQSKFHPCAECPFSKDAVSVEIVMSLLLEKLQSCAEARTVNVLFHNDQAEQTCQKPYCPLDINCGTSGSLNECKMSALQSKSVVNTTLCHVTDVLSLVELLSCIMSWDWTLSTVVPGLLRMLELPIAESFTFAIVILLGQIGRLGVAACGCEDKNVENLSNTLSAFLWHETTTRAGLPLQIAIVTALLGLISVDLGQVIEINSMCPSIASQSAVAGAIRKWFSSLSKEHQALSFSLFQS********
***********SNPCCRVWEDKYKKSQGNRTALRQALKLFEQQLDKIQAENLSLKKACQEEKACAEVEKKGREEVSAAKVSLENEISALKSEISILQRKKGGSNAQSIEEVKLLDIRVTENEREIKRLKGEVEKEKIRAESEKKNAEVEKKRAAE*WKCVE*EKGKAEEERRRANIEGKKAEEYKLQLEALRKEAVDAKSKLVLESSKLGDMTKKLESEKQKVSKEKKRANNEGKKAEEYIIQLEALRKEAGDAKLMLVSEASKSEAVSKKLEAEKQMVCKERQRANIEGKKAEEYRLQLEALRREADDAKSMLGSEASKSEALRKKLEAEKQMLSKEREHAHLEMAKAEDQRKLAEASRKQAEEEKCHAERLSQQLEEAGQRIVELQKETNDLVSGHSVETHGCKPDTDAGFLKMKNGSKVNTLQKVGEEPNLSLEIMKFEEASRRCGVDKEKSVGGKELSDLEMIKPQEHRKVVQGKCLAADHLSQQLEEARGRIDELQKQIHDLHSSRKSFDASAIQVDKYVDSGKAKLLKKQLKFEKMQVKHAKQVAKLEKDRNIILHQELGRLKVDFAQFLHRLDTVDQCFSSNTEGTDNLGNVKVRDTTNMQILKLKESLPVRMYLQSENELQKHCCTGVAASSPLRQTIQQIAPSLALSGGICSESMSGIDSKDPKLESLLGGSSRKMFQSSAINSS*ASFSDRQLMGSQERGAFSFTTSSKLMNAQATNSSMSDEINRVRFDGKPAVDAEISVRSPLKIGAAGKVNGPSRKRKRLLHTVESIELLHSEDRKLHLQIEEKLSDLHNILNKQLDKTLEEANYTVAN****F********R***QEENLGIQHSCD**********************NDLIGTAQACTEGITDTVISRHETMMNFEEFADGDYMKLLDLDNPADEECYRAAMEFPLSPTLPEIEFQALETFDINKFEPLAEETFYGGLSKEKENSVPSCSYDVIDVEINSNKLNYNVSRNSHNSLPCESEGPLDSF*********SLS*KQAGKACDNQALEKLLISDKCRSGDQGGEFPLASELGPAHDNIPRYFVVLSNIKDESSISRIYCATKSCMAQCSLVSQTEWILQKIMLALKMEEHLLSKERACVFLSLLLLNFSTIAEEKSRKSWNSDIILCLDSFASHFNAVMSDAEARRVFDELCLDELLSLIEDFLMEGKVMTCTDLSSETLSESNSKINILLDGVDTTWSSEAASASQLMAGSIILASIATATDCIGFICGASYNIFRKHTSDPSLVLMILHIFAYLGGEKIFTSGKYDLTMTVLKSIVMSLERGCSSVAANSSISLADEIQSKFHPCAECPFSKDAVSVEIVMSLLLEKLQSCAEARTVNVLFHNDQAEQTCQKPYCPLDINCGTSGSLNECKMSALQSKSVVNTTLCHVTDVLSLVELLSCIMSWDWTLSTVVPGLLRMLELPIAESFTFAIVILLGQIGRLGVAACGCEDKNVENLSNTLSAFLWHETTTRAGLPLQIAIVTALLGLISVDLGQVIEINSMCPSIASQSAVAGAIRKWFSSLSKEHQALSFSLFQSSAL*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATDISAKPEASNPCCRVWEDKYKKSQGNxxxxxxxxxxxxxxxxxxxxxxxxxxxxCQEEKACAEVEKKGxxxxxxxxxxxxxxxxxxxxxxxxxxxxKGGSNAQSIEExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxWKCVEAEKGKAEEERRRxxxxxxxxxxxxxxxxxxxxxxxxxxxxLVLESSKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGDAKLMLVSEASKSEAVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLGSExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTNDLVSGHSVETHGCKPDTDAGFLKMKNGSKVNTLQKVGEEPNLSLEIMKFEEASRRCGVDKEKSVGGKELSDLEMIKPQEHRKVVQGKCLAxxxxxxxxxxxxxxxxxxxxxxxxxxxxRKSFDASAIQVDKYVDSGKAKLLKKQLKFEKMQVKHAKQVAKLEKDRNIILHQELGRLKVDFAQFLHRLDTVDQCFSSNTEGTDNLGNVKVRDTTNMQILKLKESLPVRMYLQSENELQKHCCTGVAASSPLRQTIQQIAPSLALSGGICSESMSGIDSKDPKLESLLGGSSRKMFQSSAINSSSASFSDRQLMGSQERGAFSFTTSSKLMNAQATNSSMSDEINRVRFDGKPAVDAEISVRSPLKIGAAGKVNGPSRKRKRLLHTVESIELLHSEDRKLHLQIEEKLSDLHNILNKQLDKTLEEANYTVANNQDAFKHDQFPKKRRVSQEENLGIQHSCDSGEMNKTANLDAKVHEKTLGPANDLIGTAQACTEGITDTVISRHETMMNFEEFADGDYMKLLDLDNPADEECYRAAMEFPLSPTLPEIEFQALETFDINKFEPLAEETFYGGLSKEKENSVPSCSYDVIDVEINSNKLNYNVSRNSHNSLPCESEGPLDSFGVEVNSGNISLSAKQAGKACDNQALEKLLISDKCRSGDQGGEFPLASELGPAHDNIPRYFVVLSNIKDESSISRIYCATKSCMAQCSLVSQTEWILQKIMLALKMEEHLLSKERACVFLSLLLLNFSTIAEEKSRKSWNSDIILCLDSFASHFNAVMSDAEARRVFDELCLDELLSLIEDFLMEGKVMTCTDLSSETLSESNSKINILLDGVDTTWSSEAASASQLMAGSIILASIATATDCIGFICGASYNIFRKHTSDPSLVLMILHIFAYLGGEKIFTSGKYDLTMTVLKSIVMSLERGCSSVAANSSISLADEIQSKFHPCAECPFSKDAVSVEIVMSLLLEKLQSCAEARTVNVLFHNDQAEQTCQKPYCPLDINCGTSGSLNECKMSALQSKSVVNTTLCHVTDVLSLVELLSCIMSWDWTLSTVVPGLLRMLELPIAESFTFAIVILLGQIGRLGVAACGCEDKNVENLSNTLSAFLWHETTTRAGLPLQIAIVTALLGLISVDLGQVIEINSMCPSIASQSAVAGAIRKWFSSLSKEHQALSFSLFQSSALGPNVR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1576
224061597 1716 predicted protein [Populus trichocarpa] 0.923 0.848 0.469 0.0
224122178 1681 predicted protein [Populus trichocarpa] 0.921 0.863 0.437 0.0
3594760201460 PREDICTED: uncharacterized protein LOC10 0.812 0.876 0.451 0.0
3565536271431 PREDICTED: uncharacterized protein LOC10 0.866 0.954 0.342 0.0
296081818884 unnamed protein product [Vitis vinifera] 0.527 0.940 0.445 0.0
1478411341100 hypothetical protein VITISV_030975 [Viti 0.585 0.838 0.434 1e-180
449435888 1858 PREDICTED: uncharacterized protein LOC10 0.826 0.700 0.333 1e-168
4494885821589 PREDICTED: uncharacterized protein LOC10 0.824 0.817 0.331 1e-167
3574486511284 hypothetical protein MTR_2g031380 [Medic 0.649 0.796 0.349 1e-150
3341846921236 maternal effect embryo arrest 22 [Arabid 0.734 0.936 0.316 1e-126
>gi|224061597|ref|XP_002300559.1| predicted protein [Populus trichocarpa] gi|222847817|gb|EEE85364.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1124 bits (2908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 737/1571 (46%), Positives = 988/1571 (62%), Gaps = 115/1571 (7%)

Query: 79   KVSLENEISALKSEISILQRKKGGSNAQSIEEVKLLDIRVTENEREIKRLKGEVEKEKIR 138
            + SLENEISALKSEIS LQ K      +   EVKLL  +V++ E+EI RLK  +E  K R
Sbjct: 176  RFSLENEISALKSEISTLQWKGSAVAEEKNWEVKLLQDQVSKGEKEISRLKELLEIAKTR 235

Query: 139  AESEKKNAEVEKKRAAEAWKCVEAEKGKAEEERRRANIEGKKAEEYKLQLEALRKEAVDA 198
             +SEKKNAEVEKK A+EAWK V+AEK KA+EER+ A+ EG K EEY+LQLEAL+KEA  A
Sbjct: 236  VDSEKKNAEVEKKSASEAWKHVKAEKAKADEERKHASSEGLKVEEYQLQLEALKKEAGLA 295

Query: 199  KSKLVLESSKLGDMTKKLESEKQKVSKEKKRANNEGKKAEEYIIQLEALRKEAGDAKLML 258
            KSKL  E+ K  +  KK E+EK KV+KE+KRA++E  KAE      EA RK+       L
Sbjct: 296  KSKLASETLKYEEANKKFETEKLKVTKERKRADSEMAKAEVKKKLAEANRKK-------L 348

Query: 259  VSEASKSEAVSKKLEAEKQMVCKERQRANIEGKKAEEYRLQLEALRREADDAKSMLGSEA 318
              E S +E +SK+LE  +Q + +E Q+A       EEY+LQLE+L++EA ++KS L SE 
Sbjct: 349  AEEKSHTENLSKQLEDVRQRI-EELQKA-------EEYQLQLESLKKEAAESKSKLASET 400

Query: 319  SKSEALRKKLEAEKQMLSKEREHAHLEMAKAEDQRKLAEASRKQAEEEKCHAERLSQQLE 378
             K E   KKLEAEK  + +ER+ A  EMAKA++Q+KLAE +  +  EEK HA+ LS+QLE
Sbjct: 401  LKLEDANKKLEAEKAKVMEERKRADSEMAKAKEQKKLAETNGMKVVEEKSHADNLSRQLE 460

Query: 379  EAGQRIVELQKETNDLV----SGHSVETHGCKPDTDAGFLKMKNGSKVNTLQKVGEEPNL 434
            +A  +I EL+K  N  +     G + +      + +A  ++ ++   +  L+   ++  L
Sbjct: 461  DARIKIEELEKGINRFMLTKNMGGAFDDQHEILNGEAATIRFRD--LLENLKNNSDQSKL 518

Query: 435  SLEIMKFEEASRRCGVDKEKSVGGKELSDLEMIKPQE-------HRKVVQGKCLAADHLS 487
             LE +  E+A++R  ++K K++  K+ +DLEM+K ++       +RKV   +   AD LS
Sbjct: 519  VLEFLNSEKANKRLDIEKAKAIAEKKRADLEMLKAEKLKKLAEMNRKVAAEEKSRADQLS 578

Query: 488  QQLEEARGRIDELQKQIHDLHSSRKSFDASAIQVDKY--VDSGKAKLLKKQLKFEKMQVK 545
            QQLEE + +I+  QKQI +L SS+K   AS+   DK   V+  K KLL+KQ+K EK ++K
Sbjct: 579  QQLEEYKIKIEGWQKQIQELLSSKKMVVASSGLPDKVLNVEKTKLKLLEKQVKLEKRRLK 638

Query: 546  HAKQVAKLEKDRNIILHQELGRLKVDFAQFLHRLDTVDQCFSSNTEGTDNLGNVK----- 600
            HAK+ AK+E +RN IL QEL  LK+ F Q L RLD +D+ FS +  GT+ +  V+     
Sbjct: 639  HAKEGAKMEINRNGILQQELACLKLHFGQMLFRLDVLDKYFSCSNGGTEKMEKVRNIHSQ 698

Query: 601  ----------------------VRDTTNMQILKLKESL----PVRMYLQSENELQKHCCT 634
                                  V +   MQ  KLK  L    P + +  +E+EL K  C 
Sbjct: 699  SFHKVHCFSCWSVSAGHKAWGTVGNLGTMQRSKLKRKLCAEEPFQTHPNNESELLKPSCL 758

Query: 635  GVAASSPLRQTIQQIAPSLALSGGICSESMSGIDSKDPKLESLLGGSSRKMFQSSAINSS 694
             +  S PL QT+   AP ++ SGG  + S+SGIDS   KLESLLGGS+RK+ Q+SAINSS
Sbjct: 759  AMTISEPLTQTLNCTAPLVSPSGGNYTASISGIDS---KLESLLGGSNRKLLQTSAINSS 815

Query: 695  SASFSDRQLMGSQERGAFSFTTSSKL---MNAQATNSSMSDEINRVRFDGKPAVDAEISV 751
            SASFSD QL+GSQERGA   T+ + +    NAQ T SSMS ++ +V+ D   AV AE SV
Sbjct: 816  SASFSDGQLVGSQERGALVPTSKNLVEENFNAQTTISSMSGDVTKVQHDENLAVVAENSV 875

Query: 752  RSPLKIGAAGKVNGPSRKRKRLLHTVESIELLHSEDRKLHLQIEEKLSDLHNILNKQLDK 811
            RSPL I   G+VNG S+KR R+L  VES+ELL SE +KLHLQ+EEKLS LH + NKQ+ K
Sbjct: 876  RSPLSIDIIGRVNGHSKKR-RILDAVESVELLCSEGKKLHLQMEEKLSALHGMFNKQIKK 934

Query: 812  TLEEANYTVANNQDAF-KHDQFPKKRRVSQEENLGIQHSCDSG--EMNKTANLDAKVHEK 868
            + E+A         ++ KH++  K R+VS EEN+ I   C SG  ++ KT  +  +V E 
Sbjct: 935  SHEDAIVEPNMPGGSYAKHERTHKTRKVSYEENVIIH--CFSGINQLEKTKKIGKEVLED 992

Query: 869  ------TLGPANDLIGTAQACTEGITDTVISRHETMMNFEEFADGDYMKLLDLDNPADEE 922
                  T  PAN ++G ++AC EG++D+  S    M++FEE A+GD+MKLLDLDN ADEE
Sbjct: 993  ANACGYTSNPANLIMGASKACWEGLSDSFESSPGDMVSFEEVANGDFMKLLDLDNSADEE 1052

Query: 923  CYRAAMEFPLSPTLPEIEFQALETFDINKFEPLAEETFYGGLSKEKENSVPSCSYDVIDV 982
            CYR AME P+SPTLPEI     E   I+  +PL  E+F G L   KE+ VPS   D IDV
Sbjct: 1053 CYRRAMEMPMSPTLPEIGSSGAE---ISANKPLLVESFLGCLPNGKESLVPSFRSDAIDV 1109

Query: 983  EINSNKLNYNVSRNSHNSLPCESEGPLDSFGV---------EVNSGNISLS-AKQAGKAC 1032
            EI+SN+L       S   L  E+EGP DSF +          ++SG +S    +  G   
Sbjct: 1110 EISSNQLKDRSFGTSRADLLHENEGPADSFDILGNRSGTCNSMDSGKVSDGWTRDPGSDL 1169

Query: 1033 DNQALEKLLISDKCRSGDQGGEFPLASELGPAHDNIPRYFVVLSNIKDESSISRIYCATK 1092
            D + L      +   S  +G +FP+  ELG  HDNIP+Y V+ S+I D  S+SR++ AT+
Sbjct: 1170 DTEML------NIPSSRYEGLKFPIEGELGSIHDNIPKYCVMFSDINDTISMSRVFFATQ 1223

Query: 1093 SCMAQCSLVSQTEWILQKIMLALKMEEHLLSKERACVFLSLLLLNFSTIAEEKSRKSWNS 1152
            +C+A+CSL  Q + ++QKI+ ALKME  +L KE+AC F +LLLLNFS     K R   + 
Sbjct: 1224 TCLARCSLDIQADCMVQKILRALKMEGKILPKEKACTFFTLLLLNFSASNWGKFRSFSDP 1283

Query: 1153 DIILCLDSFASHFNAVMSDAEARRVFDEL-CLDELLSLIEDFLMEGKVMTCTDLSSETLS 1211
            D +L LDSFA   NAV+SD EAR +F E+ CLDELL LIE+FL++GK+M   DLSSE LS
Sbjct: 1284 DFLLGLDSFARDINAVVSDVEARNLFAEVCCLDELLGLIEEFLLDGKLMVYADLSSEPLS 1343

Query: 1212 ESNSKINILLDGVDTTWSSEAASASQLMAGSIILASIATATDCIGFICGASYNIFRKHTS 1271
              +  I+ILLDGV+  ++S++AS++ L+AGSIILASI  A D IGF+C ASY++ R H  
Sbjct: 1344 GCDLMIDILLDGVNIKFASKSASSNLLVAGSIILASICAAIDHIGFLCQASYSLLRMHRC 1403

Query: 1272 DPSLVLMILHIFAYLGGEKIFTSGKYDLTMTVLKSIVMSLERGCSSVAANSSISLADEIQ 1331
            D    L ILHIFAYL GEK  +  K+ LTMTVLKS++M LE G  S  A+++ SL     
Sbjct: 1404 DTVFALTILHIFAYLAGEKFLSPRKHSLTMTVLKSVIMFLEGG-DSSVASAASSLTMCKG 1462

Query: 1332 SKFHPCAECPFSKDAVSVEIVMSLLLEKLQSCAEARTV------------NVLFHNDQAE 1379
              FHPCA+CPFS D VS++IV S+LLEKLQ+CA +  +            NVL   D A+
Sbjct: 1463 GMFHPCAKCPFSTDVVSIDIVTSMLLEKLQNCAVSGIMHHLMESPSLSNSNVLCCKDIAK 1522

Query: 1380 QTCQKPYCP--LDINCGTSGSLNECKMSALQSKSVVNTTLCHVTDVLSLVELLSCIMSWD 1437
            Q+         LD+NC  S SLN+C + A QS S++N  LC ++D+LSLVELL+  MSW+
Sbjct: 1523 QSLSHEVITSVLDLNCDASCSLNKCVIPA-QSNSIMNGILCDLSDLLSLVELLAFNMSWE 1581

Query: 1438 WTLSTVVPGLLRMLELPIAESFTFAIVILLGQIGRLGVAACGCEDKNVENLSNTLSAFLW 1497
            WT   ++  LL MLE    +SF  A+V LLGQ+GRLGVAACG EDK VENL   LS FL 
Sbjct: 1582 WTCGKIITELLEMLERTKLDSFAVAVVTLLGQLGRLGVAACGYEDKGVENLRYKLSGFLS 1641

Query: 1498 HETTTRAGLPLQIAIVTALLGLISVDLGQVIEINSMCPSIASQSAVAGAIRKWFSSLSKE 1557
             + T +  LP+QIA+ T+LL L+S++  +VI+ N   P+IA QS     IR WF SL+KE
Sbjct: 1642 CDATIQMALPVQIALATSLLALLSLEFEKVIQSNCNLPAIACQSVSIDHIRSWFYSLTKE 1701

Query: 1558 HQALSFSLFQS 1568
             Q LS SL QS
Sbjct: 1702 RQVLSRSLLQS 1712

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224122178|ref|XP_002330559.1| predicted protein [Populus trichocarpa] gi|222872117|gb|EEF09248.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359476020|ref|XP_002281044.2| PREDICTED: uncharacterized protein LOC100261159 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356553627|ref|XP_003545156.1| PREDICTED: uncharacterized protein LOC100812417 [Glycine max] Back     alignment and taxonomy information
>gi|296081818|emb|CBI20823.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147841134|emb|CAN66261.1| hypothetical protein VITISV_030975 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449435888|ref|XP_004135726.1| PREDICTED: uncharacterized protein LOC101214300 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449488582|ref|XP_004158097.1| PREDICTED: uncharacterized protein LOC101227196 [Cucumis sativus] Back     alignment and taxonomy information
>gi|357448651|ref|XP_003594601.1| hypothetical protein MTR_2g031380 [Medicago truncatula] gi|355483649|gb|AES64852.1| hypothetical protein MTR_2g031380 [Medicago truncatula] Back     alignment and taxonomy information
>gi|334184692|ref|NP_001189679.1| maternal effect embryo arrest 22 [Arabidopsis thaliana] gi|330253927|gb|AEC09021.1| maternal effect embryo arrest 22 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1576
TAIR|locus:20446771297 MEE22 "MATERNAL EFFECT EMBRYO 0.239 0.291 0.368 6.6e-91
GENEDB_PFALCIPARUM|PF11_04862055 PF11_0486 "MAEBL, putative" [P 0.316 0.242 0.243 1.4e-19
UNIPROTKB|Q8IHP32055 PF11_0486 "MAEBL, putative" [P 0.316 0.242 0.243 1.4e-19
DICTYBASE|DDB_G02794491100 DDB_G0279449 "putative actin b 0.264 0.379 0.245 5.8e-19
DICTYBASE|DDB_G0270864963 DDB_G0270864 "unknown" [Dictyo 0.324 0.531 0.252 6.6e-17
ZFIN|ZDB-GENE-050208-3171422 tnks1bp1 "tankyrase 1 binding 0.345 0.383 0.207 3.9e-15
UNIPROTKB|Q086961391 mst101(2) "Axoneme-associated 0.331 0.375 0.229 5.3e-14
ZFIN|ZDB-GENE-030616-5831376 acin1a "apoptotic chromatin co 0.318 0.364 0.221 1.2e-13
UNIPROTKB|E9PT832979 Cenpf "Protein Cenpf" [Rattus 0.337 0.178 0.220 1.7e-13
UNIPROTKB|F1PHS5 4691 PLEC "Uncharacterized protein" 0.509 0.171 0.218 2e-13
TAIR|locus:2044677 MEE22 "MATERNAL EFFECT EMBRYO ARREST 22" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 553 (199.7 bits), Expect = 6.6e-91, Sum P(2) = 6.6e-91
 Identities = 147/399 (36%), Positives = 223/399 (55%)

Query:  1061 LGPAHDNIPRYFVVLSNIKDESSISRIYCATKSCMAQCSLVSQTEWILQKIMLALKMEEH 1120
             L P H ++ ++F+V SNI+D++SI  I  AT +C+ +C  V++ +W +  I+ +LKMEE+
Sbjct:   807 LKPLHGHLLKHFIVFSNIEDQNSIIIIIHATNNCLQRCPSVTKEQWAVPAILSSLKMEEN 866

Query:  1121 LLSKERACVFLSLLLLNFSTIAEEKSRKSWNSDIILCLDSFASHFNAVMSDAEARRVFDE 1180
             LL++ERACVFLSLLL NFS +   K+  + N D   CLDSF+ H   VM+D EA  +   
Sbjct:   867 LLAQERACVFLSLLLHNFSMVHTTKTGNTLNVDSFSCLDSFSKHIRGVMADTEAGVMLSG 926

Query:  1181 LCLDELLSLIEDFLMEGKVMTCTDLSSETLSESNSKINILLDGVDTTWSSEAASASQLMA 1240
                +ELL L++D L+ G+ +  +  SSET  ES+  I + L+G +    ++ A   QL+A
Sbjct:   927 FS-EELLCLLQD-LLSGQRVLFSVKSSETC-ESDLSIPVTLNGENVALVNKIALTDQLVA 983

Query:  1241 GSIILASIATATDCIGFICGASYNIFRKHTSDPSLVLM-ILHIFAYLGGEKIFTSGKYDL 1299
             GS ILA+I TA D IG+IC AS+ I  K++ + + VL+ ILH+FAY+ GEK+  S ++ +
Sbjct:   984 GSAILAAICTALDRIGYICEASFEILHKYSHEKTSVLLTILHVFAYIAGEKMVLSSEHGI 1043

Query:  1300 TMTVLKSIVMSLERGCSSVAANSSISLADEIQSKFHPCA-ECPFSKDAVSVEIVMSLLLE 1358
             ++ VLK IVM LE        N       E  S+ HP   +CPFS  + S+E + S L+E
Sbjct:  1044 SIAVLKYIVMFLE--------NKHFGTV-EGSSRLHPGKNKCPFSDRSSSLEAMASKLME 1094

Query:  1359 KLQSCAEARTVNVLFHNDQAEQTCQKP-YCPL--DINCGTSG--SLNECKMSALQSKSVV 1413
              LQ   E+ T++            +K  + P   D  C  +   S+N C + +L  + + 
Sbjct:  1095 ILQEFTESNTLHKSLTGSLGSSHLEKTEFRPAHKDFQCVLTRDQSINLCDILSLV-ELIA 1153

Query:  1414 NTTLCHVTDVLSLVELLSCI-MSWDWTLSTVVPGLLRML 1451
               T    T    +  LL  + M     LS  +  LL  L
Sbjct:  1154 CYTAWDWTSANIVAPLLKMLGMPLPMNLSVAIVSLLGQL 1192
GO:0005737 "cytoplasm" evidence=ISM
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP;NAS
GO:0009933 "meristem structural organization" evidence=RCA;IMP
GO:0010074 "maintenance of meristem identity" evidence=RCA;IMP
GO:0032876 "negative regulation of DNA endoreduplication" evidence=IMP
GO:0006312 "mitotic recombination" evidence=RCA
GO:0006342 "chromatin silencing" evidence=RCA
GO:0006406 "mRNA export from nucleus" evidence=RCA
GO:0007062 "sister chromatid cohesion" evidence=RCA
GO:0009560 "embryo sac egg cell differentiation" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0009855 "determination of bilateral symmetry" evidence=RCA
GO:0009880 "embryonic pattern specification" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0010014 "meristem initiation" evidence=RCA
GO:0010072 "primary shoot apical meristem specification" evidence=RCA
GO:0010073 "meristem maintenance" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010182 "sugar mediated signaling pathway" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0010431 "seed maturation" evidence=RCA
GO:0010564 "regulation of cell cycle process" evidence=RCA
GO:0016567 "protein ubiquitination" evidence=RCA
GO:0016569 "covalent chromatin modification" evidence=RCA
GO:0019915 "lipid storage" evidence=RCA
GO:0031047 "gene silencing by RNA" evidence=RCA
GO:0045595 "regulation of cell differentiation" evidence=RCA
GO:0048366 "leaf development" evidence=RCA
GO:0048825 "cotyledon development" evidence=RCA
GO:0050826 "response to freezing" evidence=RCA
GO:0051301 "cell division" evidence=RCA
GENEDB_PFALCIPARUM|PF11_0486 PF11_0486 "MAEBL, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IHP3 PF11_0486 "MAEBL, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0279449 DDB_G0279449 "putative actin binding protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0270864 DDB_G0270864 "unknown" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050208-317 tnks1bp1 "tankyrase 1 binding protein 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q08696 mst101(2) "Axoneme-associated protein mst101(2)" [Drosophila hydei (taxid:7224)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030616-583 acin1a "apoptotic chromatin condensation inducer 1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E9PT83 Cenpf "Protein Cenpf" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1PHS5 PLEC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1576
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 3e-25
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 5e-24
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 6e-24
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 2e-21
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 9e-16
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-13
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 8e-13
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-12
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-11
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 1e-11
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-11
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-11
pfam024631162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 5e-11
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-10
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 2e-10
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 2e-10
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-10
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-10
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 4e-10
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 6e-10
pfam024631162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 1e-09
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-09
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 5e-09
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 6e-09
pfam01576859 pfam01576, Myosin_tail_1, Myosin tail 6e-09
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 8e-09
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 9e-09
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 9e-09
TIGR02794346 TIGR02794, tolA_full, TolA protein 1e-08
COG4372499 COG4372, COG4372, Uncharacterized protein conserve 1e-08
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-08
pfam024631162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 4e-08
pfam01576859 pfam01576, Myosin_tail_1, Myosin tail 4e-08
TIGR02794346 TIGR02794, tolA_full, TolA protein 5e-08
pfam05701484 pfam05701, DUF827, Plant protein of unknown functi 7e-08
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 8e-08
pfam05622713 pfam05622, HOOK, HOOK protein 8e-08
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 2e-07
PRK09510387 PRK09510, tolA, cell envelope integrity inner memb 2e-07
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 5e-07
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-06
TIGR02794346 TIGR02794, tolA_full, TolA protein 1e-06
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-06
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-06
PRK09510387 PRK09510, tolA, cell envelope integrity inner memb 2e-06
PRK02224880 PRK02224, PRK02224, chromosome segregation protein 2e-06
COG2268548 COG2268, COG2268, Uncharacterized protein conserve 2e-06
pfam13868349 pfam13868, Trichoplein, Tumour suppressor, Mitosta 2e-06
pfam05557722 pfam05557, MAD, Mitotic checkpoint protein 2e-06
COG4372499 COG4372, COG4372, Uncharacterized protein conserve 3e-06
COG3064387 COG3064, TolA, Membrane protein involved in colici 3e-06
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-06
PRK048631486 PRK04863, mukB, cell division protein MukB; Provis 1e-05
TIGR006181042 TIGR00618, sbcc, exonuclease SbcC 2e-05
pfam01576859 pfam01576, Myosin_tail_1, Myosin tail 3e-05
PRK09510387 PRK09510, tolA, cell envelope integrity inner memb 3e-05
PRK02224880 PRK02224, PRK02224, chromosome segregation protein 3e-05
COG2268548 COG2268, COG2268, Uncharacterized protein conserve 4e-05
pfam05557722 pfam05557, MAD, Mitotic checkpoint protein 4e-05
COG4942420 COG4942, COG4942, Membrane-bound metallopeptidase 4e-05
pfam00769244 pfam00769, ERM, Ezrin/radixin/moesin family 4e-05
COG3064387 COG3064, TolA, Membrane protein involved in colici 5e-05
pfam12037276 pfam12037, DUF3523, Domain of unknown function (DU 5e-05
COG5281833 COG5281, COG5281, Phage-related minor tail protein 6e-05
pfam135141118 pfam13514, AAA_27, AAA domain 6e-05
COG4717984 COG4717, COG4717, Uncharacterized conserved protei 6e-05
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 7e-05
pfam01576859 pfam01576, Myosin_tail_1, Myosin tail 7e-05
COG3064387 COG3064, TolA, Membrane protein involved in colici 7e-05
COG3064387 COG3064, TolA, Membrane protein involved in colici 8e-05
pfam10174774 pfam10174, Cast, RIM-binding protein of the cytoma 9e-05
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-04
COG1340294 COG1340, COG1340, Uncharacterized archaeal coiled- 1e-04
PRK09510387 PRK09510, tolA, cell envelope integrity inner memb 2e-04
pfam121281198 pfam12128, DUF3584, Protein of unknown function (D 2e-04
pfam05917417 pfam05917, DUF874, Helicobacter pylori protein of 2e-04
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 3e-04
TIGR02794346 TIGR02794, tolA_full, TolA protein 3e-04
pfam00769244 pfam00769, ERM, Ezrin/radixin/moesin family 3e-04
PRK02224880 PRK02224, PRK02224, chromosome segregation protein 4e-04
pfam00769244 pfam00769, ERM, Ezrin/radixin/moesin family 4e-04
COG5281833 COG5281, COG5281, Phage-related minor tail protein 4e-04
pfam10174774 pfam10174, Cast, RIM-binding protein of the cytoma 4e-04
pfam121281198 pfam12128, DUF3584, Protein of unknown function (D 4e-04
COG2433652 COG2433, COG2433, Uncharacterized conserved protei 5e-04
PRK048631486 PRK04863, mukB, cell division protein MukB; Provis 7e-04
COG3064387 COG3064, TolA, Membrane protein involved in colici 8e-04
TIGR02794346 TIGR02794, tolA_full, TolA protein 9e-04
pfam024631162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 0.002
PRK09510387 PRK09510, tolA, cell envelope integrity inner memb 0.002
COG4942420 COG4942, COG4942, Membrane-bound metallopeptidase 0.002
PRK12704520 PRK12704, PRK12704, phosphodiesterase; Provisional 0.002
TIGR006061311 TIGR00606, rad50, rad50 0.002
PRK07735430 PRK07735, PRK07735, NADH dehydrogenase subunit C; 0.002
COG2268548 COG2268, COG2268, Uncharacterized protein conserve 0.003
PRK00409782 PRK00409, PRK00409, recombination and DNA strand e 0.003
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.004
TIGR006181042 TIGR00618, sbcc, exonuclease SbcC 0.004
COG1340294 COG1340, COG1340, Uncharacterized archaeal coiled- 0.004
PRK12704520 PRK12704, PRK12704, phosphodiesterase; Provisional 0.004
COG30961480 COG3096, MukB, Uncharacterized protein involved in 0.004
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information 
 Score =  114 bits (286), Expect = 3e-25
 Identities = 128/458 (27%), Positives = 212/458 (46%), Gaps = 33/458 (7%)

Query: 54   LKKACQEEKACAEVEKKGREEVSAAKVSLENEISALKSEISILQRKKGGSNAQSIEEVKL 113
             KK  +E K  A+  KK  EE   A  + + E  A   E    + K   +  +  E  K 
Sbjct: 1320 AKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK 1379

Query: 114  LDI--RVTENEREIKRLKGEVEKEKIRAESEKKNAEVEKKRAAEAWKCVEAEKGKAEEER 171
             D   +  E +++    K + E++K +A+ E K A   KK+A EA K  E EK KA+E +
Sbjct: 1380 ADAAKKKAEEKKKADEAKKKAEEDKKKAD-ELKKAAAAKKKADEAKKKAE-EKKKADEAK 1437

Query: 172  RRANIEGKKAEEYKLQLEALRKEAVDAKSKLVLESSKLGDMTKKLESEKQKVSKEKKRAN 231
            ++A  E KKA+E K + E  +K A +AK K   E +K  D  KK   E +K  + KK+A 
Sbjct: 1438 KKAE-EAKKADEAKKKAEEAKK-AEEAKKK--AEEAKKADEAKKKAEEAKKADEAKKKAE 1493

Query: 232  NEGKKAEEYIIQLEALRKEAGDAKLMLVSEASKSEAVSKKLEAEKQMVCK--ERQRANIE 289
               KKA+E     EA +K+A +AK     EA K++   K  EA+K    K  E ++   E
Sbjct: 1494 EAKKKADEAKKAAEA-KKKADEAK--KAEEAKKADEAKKAEEAKKADEAKKAEEKKKADE 1550

Query: 290  GKKAEEYRLQLEALR----READDAKSMLGSEASKSEALRKKLEAEKQMLSKEREHAHLE 345
             KKAEE +   E  +    ++A++ K+M   +A +++   +    E   L +E +    E
Sbjct: 1551 LKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAE 1610

Query: 346  MAKAEDQRKLAEASRKQAEEEKCHAERLSQQLEEAGQRIVELQKETNDLVSGHSVETHGC 405
             AK  ++ K+     K+AEEEK   E+L ++  E  ++  EL+K   +     + E    
Sbjct: 1611 EAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKA 1670

Query: 406  KPDTDAGFLKMKNGSKVNTLQKVGEEPNLSLEIMKFEEASRRCGVDKEKSVGGKELSDLE 465
            + D            K    +K  E+        K  EA ++   + +K+   K+    E
Sbjct: 1671 EEDK----------KKAEEAKKAEEDEK------KAAEALKKEAEEAKKAEELKKKEAEE 1714

Query: 466  MIKPQEHRKVVQGKCLAADHLSQQLEEARGRIDELQKQ 503
              K +E +K  +   + A+   ++ EE + + +E +K 
Sbjct: 1715 KKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKD 1752

Length = 2084
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail Back     alignment and domain information
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|218704 pfam05701, DUF827, Plant protein of unknown function (DUF827) Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|218661 pfam05622, HOOK, HOOK protein Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin Back     alignment and domain information
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein Back     alignment and domain information
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional Back     alignment and domain information
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC Back     alignment and domain information
>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein Back     alignment and domain information
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family Back     alignment and domain information
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523) Back     alignment and domain information
>gnl|CDD|227606 COG5281, COG5281, Phage-related minor tail protein [Function unknown] Back     alignment and domain information
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain Back     alignment and domain information
>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail Back     alignment and domain information
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) Back     alignment and domain information
>gnl|CDD|114629 pfam05917, DUF874, Helicobacter pylori protein of unknown function (DUF874) Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family Back     alignment and domain information
>gnl|CDD|227606 COG5281, COG5281, Phage-related minor tail protein [Function unknown] Back     alignment and domain information
>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone Back     alignment and domain information
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) Back     alignment and domain information
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional Back     alignment and domain information
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional Back     alignment and domain information
>gnl|CDD|129694 TIGR00606, rad50, rad50 Back     alignment and domain information
>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated Back     alignment and domain information
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC Back     alignment and domain information
>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional Back     alignment and domain information
>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1576
KOG01611930 consensus Myosin class II heavy chain [Cytoskeleto 100.0
PF01576859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 99.88
KOG01611930 consensus Myosin class II heavy chain [Cytoskeleto 99.52
PTZ001212084 MAEBL; Provisional 99.44
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 98.91
PRK02224880 chromosome segregation protein; Provisional 98.88
PRK02224880 chromosome segregation protein; Provisional 98.56
PF01576859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 98.56
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 98.51
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 98.32
KOG09961293 consensus Structural maintenance of chromosome pro 98.29
TIGR006061311 rad50 rad50. This family is based on the phylogeno 98.29
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 98.19
KOG09761265 consensus Rho/Rac1-interacting serine/threonine ki 98.17
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 98.11
PRK03918880 chromosome segregation protein; Provisional 98.07
KOG09761265 consensus Rho/Rac1-interacting serine/threonine ki 98.07
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 98.07
KOG09711243 consensus Microtubule-associated protein dynactin 97.96
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 97.95
PRK03918880 chromosome segregation protein; Provisional 97.92
KOG10291118 consensus Endocytic adaptor protein intersectin [S 97.92
TIGR006061311 rad50 rad50. This family is based on the phylogeno 97.86
COG11961163 Smc Chromosome segregation ATPases [Cell division 97.83
KOG06121317 consensus Rho-associated, coiled-coil containing p 97.77
KOG10291118 consensus Endocytic adaptor protein intersectin [S 97.76
KOG06121317 consensus Rho-associated, coiled-coil containing p 97.45
PF05701522 WEMBL: Weak chloroplast movement under blue light; 97.44
KOG46741822 consensus Uncharacterized conserved coiled-coil pr 97.4
KOG09711243 consensus Microtubule-associated protein dynactin 97.38
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 97.33
PF10174775 Cast: RIM-binding protein of the cytomatrix active 97.22
KOG46741822 consensus Uncharacterized conserved coiled-coil pr 97.17
PRK048631486 mukB cell division protein MukB; Provisional 97.1
KOG09961293 consensus Structural maintenance of chromosome pro 97.1
PRK11637428 AmiB activator; Provisional 96.95
KOG46431195 consensus Uncharacterized coiled-coil protein [Fun 96.86
PF10174775 Cast: RIM-binding protein of the cytomatrix active 96.74
KOG0977546 consensus Nuclear envelope protein lamin, intermed 96.73
KOG4673961 consensus Transcription factor TMF, TATA element m 96.72
PRK11637428 AmiB activator; Provisional 96.72
KOG46431195 consensus Uncharacterized coiled-coil protein [Fun 96.67
PRK04778569 septation ring formation regulator EzrA; Provision 96.54
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 96.44
PF00038312 Filament: Intermediate filament protein; InterPro: 96.38
COG4942420 Membrane-bound metallopeptidase [Cell division and 96.18
KOG0977546 consensus Nuclear envelope protein lamin, intermed 95.98
KOG4673961 consensus Transcription factor TMF, TATA element m 95.91
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 95.89
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 95.69
PRK01156895 chromosome segregation protein; Provisional 95.4
KOG0980980 consensus Actin-binding protein SLA2/Huntingtin-in 95.37
PHA02562562 46 endonuclease subunit; Provisional 95.14
PRK048631486 mukB cell division protein MukB; Provisional 95.1
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 94.97
PLN031881320 kinesin-12 family protein; Provisional 94.96
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 94.91
COG4372499 Uncharacterized protein conserved in bacteria with 94.84
PF05701522 WEMBL: Weak chloroplast movement under blue light; 94.74
PF05483786 SCP-1: Synaptonemal complex protein 1 (SCP-1); Int 94.5
KOG02501074 consensus DNA repair protein RAD18 (SMC family pro 94.47
KOG02501074 consensus DNA repair protein RAD18 (SMC family pro 94.01
KOG1103561 consensus Predicted coiled-coil protein [Function 93.94
KOG0980980 consensus Actin-binding protein SLA2/Huntingtin-in 93.83
KOG2072988 consensus Translation initiation factor 3, subunit 93.8
PF15070617 GOLGA2L5: Putative golgin subfamily A member 2-lik 93.7
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 93.6
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 93.43
KOG09331174 consensus Structural maintenance of chromosome pro 93.34
PF05622713 HOOK: HOOK protein; InterPro: IPR008636 This famil 93.23
PF00038312 Filament: Intermediate filament protein; InterPro: 93.01
PRK01156895 chromosome segregation protein; Provisional 92.98
COG4942420 Membrane-bound metallopeptidase [Cell division and 92.67
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 92.6
PF05622713 HOOK: HOOK protein; InterPro: IPR008636 This famil 92.54
KOG00181141 consensus Structural maintenance of chromosome pro 92.09
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 92.07
PF05557722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 91.97
PF07111739 HCR: Alpha helical coiled-coil rod protein (HCR); 91.67
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 91.42
KOG09641200 consensus Structural maintenance of chromosome pro 91.29
PF05010207 TACC: Transforming acidic coiled-coil-containing p 91.21
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 90.71
PHA02562562 46 endonuclease subunit; Provisional 90.15
PRK09039343 hypothetical protein; Validated 89.85
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 89.74
PF15066527 CAGE1: Cancer-associated gene protein 1 family 89.62
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 89.0
COG0419908 SbcC ATPase involved in DNA repair [DNA replicatio 88.9
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 87.42
KOG09641200 consensus Structural maintenance of chromosome pro 87.37
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 86.71
PRK109291109 putative mechanosensitive channel protein; Provisi 86.55
TIGR026801353 conserved hypothetical protein TIGR02680. Members 86.47
COG3883265 Uncharacterized protein conserved in bacteria [Fun 85.55
PF05557722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 85.24
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 85.0
KOG4364811 consensus Chromatin assembly factor-I [Chromatin s 84.74
KOG0249916 consensus LAR-interacting protein and related prot 84.7
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 84.14
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 83.51
PF15450531 DUF4631: Domain of unknown function (DUF4631) 83.06
PF05483786 SCP-1: Synaptonemal complex protein 1 (SCP-1); Int 82.25
PF09730717 BicD: Microtubule-associated protein Bicaudal-D; I 82.22
KOG2129552 consensus Uncharacterized conserved protein H4 [Fu 80.92
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 80.73
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 80.02
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=2e-32  Score=360.69  Aligned_cols=516  Identities=24%  Similarity=0.289  Sum_probs=384.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 000395           13 NPCCRVWEDKYKKSQGNRTALRQALKLFEQQLDKIQAENLSLKKACQEEKACAEVEKKGREEVSAAKVSLENEISALKSE   92 (1576)
Q Consensus        13 n~c~~qLKeKleKLEe~RKeLEE~vklLEEKldqLQaE~~~L~kalEEErlree~Er~krEeEsk~K~ELEkeIsELKkq   92 (1576)
                      .+.+..+++++.+.+..++++++.       ..++..+...|...++.++..............+.+.++|.++.++..+
T Consensus       844 ~~e~~~l~~~l~~~e~~~~ele~~-------~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~  916 (1930)
T KOG0161|consen  844 EEEIQKLKEELQKSESKRKELEEK-------LVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKER  916 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666666666666666666555       3333334444444444444333334445555566677777777777777


Q ss_pred             HHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395           93 ISILQRKKGGSNAQSIEEVKLLDIRVTENEREIKRL---KGEVEKEKIRAESEKKNAEVEKKRAAEAWKCVEAEKGKAEE  169 (1576)
Q Consensus        93 LEelEq~~~kle~Ek~~E~K~LQEeI~eLEeEieeL---kqKLEkEKk~aeeekkkaEEekkkaEE~~kkLe~EK~k~EE  169 (1576)
                      ++.++.+...++    .+.+.+++++..+.+++.++   .++++.|+..++...++++++....+|...++.++++..|+
T Consensus       917 ~e~~ee~~~~le----~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe  992 (1930)
T KOG0161|consen  917 LEEEEEKNAELE----RKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEE  992 (1930)
T ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777765444333    22444445555555555533   45666777777777777777776677776666666655543


Q ss_pred             HHHHHHHHh-------------h-----HHHHHHH---HHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHHHHH
Q 000395          170 ERRRANIEG-------------K-----KAEEYKL---QLEALRKEAVDAKSKLVLESSKLGDMTKKLESEKQKVSKEKK  228 (1576)
Q Consensus       170 EK~ka~eel-------------K-----KveELek---qiEkaRqElEkaKRKLEgELk~AqEA~kklEeEKqkaeeekK  228 (1576)
                      .-+.-...+             +     .+.+++.   +.++.+.++++.+|+++++++.+++....+..+++++..+++
T Consensus       993 ~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~ 1072 (1930)
T KOG0161|consen  993 RIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLK 1072 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            222222222             1     2223322   566889999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHHHHHHH-HHHHHHHhhhH---------------
Q 000395          229 RANNEGKKAEEY----IIQLEALRKEAGDAKLMLVSEASKSEAVSKKLEAEKQ-MVCKERQRANI---------------  288 (1576)
Q Consensus       229 kAE~E~keAEe~----k~qaeqLrkEaeQKKlr~eEeQa~ieELleeLEaERq-~AkaEKqRaD~---------------  288 (1576)
                      +++.++..+..+    ...+.++     ++.++  +++++|.+|.++++++|. ++++++++.|.               
T Consensus      1073 kke~El~~l~~k~e~e~~~~~~l-----~k~i~--eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~ 1145 (1930)
T KOG0161|consen 1073 KKESELSQLQSKLEDEQAEVAQL-----QKQIK--ELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQG 1145 (1930)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHH-----HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999997666    6666666     55555  999999999999999999 59999999992               


Q ss_pred             -------HhHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395          289 -------EGKKAEEY----------------RLQLEALRREADDAKSMLGSEASKSEALRKKLEAEKQMLSKEREHAHLE  345 (1576)
Q Consensus       289 -------EL~KarEa----------------e~tLeeLRKKh~dS~~EL~EQLeqlqeiKkKLEkEK~klk~Er~dl~aE  345 (1576)
                             +++++++.                +.+++.+|++|+++++++.++++++++.+++++++|..+..+.+++..+
T Consensus      1146 ~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~e 1225 (1930)
T KOG0161|consen 1146 GTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAE 1225 (1930)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   22233222                4699999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCCcchhhhhh-hccccccc
Q 000395          346 MAKAEDQRKLAEASRKQAEEEKCHAERLSQQLEEAGQRIVELQKETNDLVSGHSVETHGCKPDTDAGFLKM-KNGSKVNT  424 (1576)
Q Consensus       346 ~akaqearklAe~akkKA~eEK~~adQLe~QL~Eak~KleElerq~~EL~s~k~klq~E~~~e~~~~lEe~-k~~skL~k  424 (1576)
                      +..+...         +++.++ .++.++.++.+++.+++++.+++.++..+++++++|. .+..+.++++ ...+.+.+
T Consensus      1226 v~~~~~~---------k~~~e~-~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~-~~l~~~lee~e~~~~~~~r 1294 (1930)
T KOG0161|consen 1226 LEQLSSE---------KKDLEK-KDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNEN-EELSRQLEEAEAKLSALSR 1294 (1930)
T ss_pred             HHHHhhh---------hccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHhhHhHHHHHHHHHHHH
Confidence            9977444         566666 5689999999999999999999999999999999993 4445556666 56665555


Q ss_pred             ccccccCcchhHHhhhHHHHHhHhcccccccccccccchhhhcchHHHHhHH---HhHhHHHHHHHHHHHHHHhhHHHHH
Q 000395          425 LQKVGEEPNLSLEIMKFEEASRRCGVDKEKSVGGKELSDLEMIKPQEHRKVV---QGKCLAADHLSQQLEEARGRIDELQ  501 (1576)
Q Consensus       425 ~rs~~~Q~~Lsk~k~qlEelarqL~~EKeK~~~E~q~~d~Ee~k~eek~kLa---r~~e~d~d~LrEQLEEE~EaK~eLe  501 (1576)
                      .++.+++        +++++.+++               .+++++  +.+|+   ++.++|++.|++++||+.+.+.++.
T Consensus      1295 ~~~~~~~--------qle~~k~ql---------------e~e~r~--k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~ 1349 (1930)
T KOG0161|consen 1295 DKQALES--------QLEELKRQL---------------EEETRE--KSALENALRQLEHELDLLREQLEEEQEAKNELE 1349 (1930)
T ss_pred             HHHHHHH--------HHHHHHHHH---------------HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5444444        444454444               778877  66777   9999999999999999999999999


Q ss_pred             HHHHHHhh----hhhhhccccchhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHhhhHhHhhHhHHHHhHHHHh
Q 000395          502 KQIHDLHS----SRKSFDASAIQVDKYVDSGKAKLLKKQLKFEK-MQVKHAKQVAKLEKDRNIILHQELGRLKVDFAQFL  576 (1576)
Q Consensus       502 RQLskl~s----~RkK~Ete~i~~~EeLEEAKKKL~K~kle~ek-~e~k~akk~~kLEKaK~RlLQqELEDL~vDl~~~~  576 (1576)
                      |+++++++    ||++|++..+++.+++|++|++++.+....+. .+...+ ++++||++|++ ||+|++|+.+|+++..
T Consensus      1350 r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~-~~~~Lek~k~~-l~~el~d~~~d~~~~~ 1427 (1930)
T KOG0161|consen 1350 RKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANA-KNASLEKAKNR-LQQELEDLQLDLERSR 1427 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHH-HHhHHHHHHHHHHHHH
Confidence            99999877    99999999999999999999999996666664 344443 59999999999 9999999999998885


Q ss_pred             hhhhhhhh
Q 000395          577 HRLDTVDQ  584 (1576)
Q Consensus       577 ~~~~~ld~  584 (1576)
                      .....|+.
T Consensus      1428 ~~~~~le~ 1435 (1930)
T KOG0161|consen 1428 AAVAALEK 1435 (1930)
T ss_pred             HHHHHHHH
Confidence            55444443

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PTZ00121 MAEBL; Provisional Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PLN03188 kinesin-12 family protein; Provisional Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG1103 consensus Predicted coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PF15066 CAGE1: Cancer-associated gene protein 1 family Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>PRK10929 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only] Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF15450 DUF4631: Domain of unknown function (DUF4631) Back     alignment and domain information
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown] Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1576
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-21
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-19
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 6e-19
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-18
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-16
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-13
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-10
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 7e-13
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-12
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-11
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 9e-11
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 6e-09
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-08
1cii_A602 Colicin IA; bacteriocin, ION channel formation, tr 1e-09
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 2e-09
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 9e-08
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 2e-07
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 9e-06
2zuo_A861 MVP, major vault protein; repeat domains, protein- 2e-08
2zuo_A861 MVP, major vault protein; repeat domains, protein- 5e-07
2zuo_A861 MVP, major vault protein; repeat domains, protein- 7e-07
2zuo_A861 MVP, major vault protein; repeat domains, protein- 6e-05
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 3e-06
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 6e-06
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 9e-06
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 2e-05
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 7e-04
1f5n_A592 Interferon-induced guanylate-binding protein 1; GB 2e-05
3vkg_A3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 1e-04
3vkg_A3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 1e-04
3iyk_A526 VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongu 1e-04
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 1e-04
1tr2_A1066 Vinculin isoform 1; actin-binding, cell adhesion; 5e-04
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
 Score =   99 bits (249), Expect = 4e-21
 Identities = 59/289 (20%), Positives = 119/289 (41%), Gaps = 6/289 (2%)

Query: 109  EEVKLLDIRVTENEREIKRLKGEVEKEKIRAESEKKNAEVEKKRAAEAWKCVEAEKGKAE 168
            EE++    R  + E E+K L+ +  +        ++  + E +  AEA +       K +
Sbjct: 864  EELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQ 923

Query: 169  EERRRANIEGKKAEEYKLQLEALRKEAVDAKSKLVLESSKLGDMTK---KLESEKQKVSK 225
            E     +    + EE + + + L+ E    + +++    +L +      KL+ EK     
Sbjct: 924  ELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADG 983

Query: 226  EKKRANNEGKKAEEYIIQLEALRKEAGDAKLMLVSEASKSEAVSKKLEAEKQMVCKERQR 285
            + K+  ++    E+   +L   RK   +    L +  ++ E  +K L   K         
Sbjct: 984  KIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISE 1043

Query: 286  ANIEGKKAEEYRLQLEALRREADDAKSMLGSEASKSEALRKKLEAEKQMLSKEREHAHLE 345
              +  KK E+ R +LE ++R+ +   S L  + ++ +A   +L+A+     KE E     
Sbjct: 1044 LEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA--KKEEELQAAL 1101

Query: 346  MAKAEDQRKLAEASRKQAEEEKCHAERLSQQLEEAGQRIVELQKETNDL 394
             A+ ED+      + K+  E + H   L + LE       + +K+  DL
Sbjct: 1102 -ARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDL 1149
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1 Length = 602 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus} Length = 526 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A {Homo sapiens} PDB: 1st6_A Length = 1066 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1576
d1f5na1300 a.114.1.1 (A:284-583) Interferon-induced guanylate 2e-05
d2es4d1280 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) 4e-04
d2es4d1280 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) 0.001
d2es4d1280 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) 0.002
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 Back     information, alignment and structure

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 34/221 (15%), Positives = 73/221 (33%), Gaps = 4/221 (1%)

Query: 170 ERRRANIEGKKAEEYKLQLEALRKEAVDAKSKLVLESSKLGDMTKKLESEKQKVSKEKKR 229
           E    +        ++ +L A  ++  D   K   E+S                 + K  
Sbjct: 83  EVFIRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAG 142

Query: 230 ANNEGKKAEEYIIQLEALRKEAGDAKLMLVSEASKSEAVSKKLEAEKQMVCKERQRANIE 289
             ++      ++ +L+ L+K+  +     +      +   K  E+    + +  Q    +
Sbjct: 143 IYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEK 202

Query: 290 GKKAEEYRLQLEALRREADDAKSMLGSEASKSEALRKKLEAEKQMLSKEREHAHLEMAKA 349
            K+ E  R++ E+ +  A     M        E   +  +   + L  E+          
Sbjct: 203 EKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQL-TEKMENDRVQLLK 261

Query: 350 EDQRKLAEASRKQAEEEKCHAERLSQQLEEAGQRIVELQKE 390
           E +R LA    K  E+E+   E   ++       I +LQ +
Sbjct: 262 EQERTLAL---KLQEQEQLLKEGFQKESRIMKNEIQDLQTK 299

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00