Citrus Sinensis ID: 000403

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560---

MDQNQSQRSSIGAATASSASSRAYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPNKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQQFTTRVNSSQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKMVQNPS

cccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHEEcccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHccccccccccccccccccccccccHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHcccccHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccccccccHHHHHHHHHHHccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccEEHHHHHHHccccccccHHHHHHHHccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHccccccccccccccHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHccccccccccHHHHHcccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccHHHccHHHHHHHccccccHHHHHHHHHHHHccccccHHHHcHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHEEEEccccccccccccccHHHHHccHHHHcccHHHHHHHHccccccccccccccccccccccc

ccccccccccccHHHcccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccEEEccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHEEEEccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHcccccHHHHHHHHHHHHcccccccHHHHHcHHHHHHHHHHHEccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHcccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEccccccccHHHHHHcccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHHEEEcccccccccccccccEEcHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHEcccHHHHHHHHHHHHHHHHHHHHcccHHHccccEEEEEcccccccccccHHHHHHHHHHccccEEEEEEcHcHHHHccHHHHHHccHHHHHHHHHccccccEEEccccHHHHHEEEEEEcccccHHHHHHHHHHccccHHHHcccccccccccEEEccccccccHHHHHHccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccHcccccHHHHHHHHHHHHcccHccccccHHHHHHHHHHHHHcHccccccHHHHHHHHHHcHHHHHHHHHHHHccccccccHHccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccHHHHHHccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHHccccccHcccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHccccHHHHHHHHHHHHHHccccHHHHHHHcEcccccccHHccccccccccccccccHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccEcccccccHHHHHHHHHHHHccccHHHccccHHHHHHHHHHHHHHHHcccHHHHHccHHHHHccccHHHHHHHHHHHHHHccccHHHHccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccEEccccccHHHHHHHHHHHHHHcHHHHHHHHHcccccccEEEEccccccccccc

mdqnqsqrssigaatassassrayqfhPARAAIIDLFNLylgrssrqkqddsirdppnktQKRVLALnrelpprneqFLIDFEQlqsqfpdqdqlrSVTESVLISMVVQCCSHVPRAEFILFALRSLCSigyinwdtfLPSLLSSvssaemsagqgsqampavsatslqqsgmlptssgipnssnyqssnpasplpsvhgigspaqsaiETSVcaamspvkssdvsctgqqfttrvnssqgidesdgksWRLDKALIEWLHSCLDVIWLlvdedrcrvpFYELLRTGLQfienipddEALFTLILEIHRRRDMMAMHMQMLDqhlhcptfgthrilsqttpnisveaagnlryspitypsvlgeplhgedlatsiqrgSLDWERAMRCIRHAiratpspdwwKRVLLVapcyrnpaqgptpgavftYDMISEAVIDRIVELLKLTnsevncwhdwlIFSDVFFFLVKSGCIDFVDFVDKLVSRlqdgdnhilRTNHVTWLLAQIIRVELVMGalnsdsrkVETTRKILSFHredrctdpnnpqSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLssagvtelfpgsnlppnerlmvmrevnplpmslltGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAqrnpsllakvgvtpLVLEIVNYRLlplyryqgkTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDffslkregkgsteftETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQctqllspsadptyvktylshsfpqhRQYLCAGAWIlmqghpeninSANLLRVLRefspeevtsNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYcmnrgppehwlySGLFKRVELQKALGNhlswkeryptfFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNvfdlskipfsesfpqhisssnpvmcpplDYFATLLLGLVNNvipalnynsksgstmdaslraphnkspmtsqsgpsnvsegrkefyqnqdpgtyTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIqptliqtsngpygasnsvgqgsvlptspsggstdslgasrstpsvsgintssfvsrsgytcqqLSCLLIQACGLLlaqlppdfhMQLYMEASRIIKESwwladgkrslgeldsavgyalldptwaaqdntsTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMgpllprlvNAHTLFNKTLALLLNTMgdvygkntlppapveasEIADLIDFLHHVVHyegqggpvqasskprpevLVLTGRAAESLRPEVQHLLSHlkpdvnssiyaathpkmvqnps

mdqnqsqrssigaatassassrAYQFHPARAAIIDLFNLYLGRSSrqkqddsirdppnktqKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKssdvsctgqqfttrvnssqgidesdgkSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLqfienipddeALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHairatpspdwwKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMgalnsdsrkvETTRKILSfhredrctdpnnPQSILLDFISSCQNLRIWSLNTSTREYLnneqlqkgkqidewWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSllakvgvtplVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGkgsteftetlnrITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRaphnkspmtsqsgpsnvSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQggpvqasskprPEVLVLTGRAAESLRPEVQHLLSHlkpdvnssiyaathpkmvqnps

MDQNQSQRssigaatassassraYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPNKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFlpsllssvssAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQQFTTRVNSSQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGdrmmdymnmddrSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHEllpldilllalidrdddpHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPvsasqivsslvqivvniqPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKMVQNPS

***********************YQFHPARAAIIDLFNLYLG***********************************FLIDFEQ**********LRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLL*********************************************************************************************************SWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSD***VETTRKILSFHR***C******QSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNY*******************************************GTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQT*********************************************FVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEG**********************************************************

****************************ARAAIIDLFNLY************************************QFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSS*********************************************************************AAMSPVKSSDV****************************KALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDL**SIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVA****************TYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNT***************QIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFP******N*RLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIF*GQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILS******************ETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQR*HSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISS****MCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASL******************SEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLG***************FVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPV****KPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAAT*********

**********************AYQFHPARAAIIDLFNLYLGR***************KTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSS*********************SLQQSGMLPTSSGIP****************VHGIGSPAQSAIETSV***************GQQFT*************GKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRA*******************RKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLP********************SGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQG*********RPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKMVQNPS

************************QFHPARAAIIDLFNLYLGRS***********PP*KTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSSVS***********************************************LPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQQFTTRVNSSQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSP**************************SRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKM*****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1563	2.2.26 [Sep-21-2011]
F4I4P3		1615	Mediator of RNA polymeras	yes	no	0.980	0.949	0.719	0.0
Q9W1X7		1439	Mediator of RNA polymeras	yes	no	0.360	0.391	0.212	2e-12
Q55BN0		1662	Putative mediator of RNA	yes	no	0.260	0.244	0.220	2e-10
Q16HH9		1409	Mediator of RNA polymeras	N/A	no	0.355	0.394	0.207	9e-09
Q5RIW8		1376	Mediator of RNA polymeras	yes	no	0.471	0.535	0.208	3e-08
Q5EB59		1367	Mediator of RNA polymeras	yes	no	0.462	0.528	0.200	4e-08
Q9ULK4		1368	Mediator of RNA polymeras	yes	no	0.472	0.539	0.199	2e-07
Q80YQ2		1367	Mediator of RNA polymeras	yes	no	0.463	0.529	0.200	4e-07
Q6P423		1369	Mediator of RNA polymeras	N/A	no	0.378	0.431	0.209	4e-05
Q60UZ5		1589	Mediator of RNA polymeras	N/A	no	0.178	0.175	0.218	4e-05

>sp\|F4I4P3\|MED23_ARATH Mediator of RNA polymerase II transcription subunit 23 OS=Arabidopsis thaliana GN=MED23 PE=1 SV=1	Back alignment and function desciption

 Score = 2372 bits (6147), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1168/1623 (71%), Positives = 1338/1623 (82%), Gaps = 90/1623 (5%)

Query: 4    NQSQRSSIGAATASSASSRAYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPNKTQKR 63
            +QSQR+      A+ +SSR+YQFHPARAAIIDLFNLYLGR SRQK D+S+RDPPNK+QKR
Sbjct: 2    DQSQRT----VAATPSSSRSYQFHPARAAIIDLFNLYLGRGSRQKPDESLRDPPNKSQKR 57

Query: 64   VLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFA 123
            V A NR+LPPRNEQFL+DFE LQSQF D +QLR++TESVLIS+VVQC +H PRAEF+LFA
Sbjct: 58   VHAPNRDLPPRNEQFLLDFELLQSQFNDPEQLRTITESVLISLVVQCSNHAPRAEFLLFA 117

Query: 124  LRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGIPNS 183
            LR+LC I YINWDTFLPSLLSSVS+AE S  QG QA  A + +S   S           S
Sbjct: 118  LRTLCRISYINWDTFLPSLLSSVSAAEASLSQGVQAAAATAGSSATSS----------QS 167

Query: 184  SNYQSSNPASPLPSVHGIGSPAQSAIET-----SVCAAMSPVKSSDVSCTGQQFTTRVNS 238
                S NP S LPS HGIGSP+ S +++      +  A   V+ + +  + +     VNS
Sbjct: 168  VVPVSVNPTSLLPSAHGIGSPSASEVKSVENGQQIARAGQIVRENAMRNSQRIRAAAVNS 227

Query: 239  SQ---------------------------------------GIDESDGKSWRLDKALIEW 259
             +                                       G ++S GKSWR +K L EW
Sbjct: 228  LRQLSCKIILIGVESSLKPVTHAEIFQYMMNWLVNWDRRDLGTEDSVGKSWRSEKTLAEW 287

Query: 260  LHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQ 319
            L SCLDVIWLLV+E   R+PFYELLR+GLQFIENIPDDEALFTLI+EIHRRRD MAMHM 
Sbjct: 288  LRSCLDVIWLLVEEGESRIPFYELLRSGLQFIENIPDDEALFTLIMEIHRRRDAMAMHML 347

Query: 320  MLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGS 379
            MLDQHLHCP+FGTHRI+SQ T N+  EA  +LR+SPITYPSVLGEPL+GEDLA SI +GS
Sbjct: 348  MLDQHLHCPSFGTHRIVSQITANVPPEAVPHLRHSPITYPSVLGEPLYGEDLAMSIPKGS 407

Query: 380  LDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQ-GPTPGAVFTYDMISEAVIDRI 438
            LDWERA+RCIRHAIR TPSPDWWKRVL+VAPCYR   Q GP PGAVFT DMI EA+IDRI
Sbjct: 408  LDWERAVRCIRHAIRTTPSPDWWKRVLVVAPCYRPSTQAGPIPGAVFTSDMICEAIIDRI 467

Query: 439  VELLKLTNS-------------------EVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDK 479
            VELLKLTNS                   + NCW +WL+FSD+FFFL+KSGC DFVDF+DK
Sbjct: 468  VELLKLTNSGNDCFGIDLVSVTFPPLYADANCWQEWLVFSDIFFFLIKSGCTDFVDFIDK 527

Query: 480  LVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDP 539
            LV RL   DNHILRTNHVTWLLAQIIRVELVM ALNSD++KVETTRKILSFHREDR +DP
Sbjct: 528  LVLRLNGVDNHILRTNHVTWLLAQIIRVELVMTALNSDAKKVETTRKILSFHREDRNSDP 587

Query: 540  NNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNM 599
            NNPQS+LLDF+SSCQNLRIWSL+T+TR YLNNEQL KGKQIDEWWR  SKG+RMMDYMNM
Sbjct: 588  NNPQSVLLDFVSSCQNLRIWSLSTTTRAYLNNEQLLKGKQIDEWWR--SKGERMMDYMNM 645

Query: 600  DDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSL 659
            DDRS+GMFWVVSYTMAQPACETV+NWLSSAG+ EL PG  L PN+R+M+ +EV PLPMSL
Sbjct: 646  DDRSIGMFWVVSYTMAQPACETVINWLSSAGMAEL-PG--LQPNDRVMMTQEVTPLPMSL 702

Query: 660  LTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPS 719
            L+GFS+NLCLKLALQME+++F  QVV SIAMVETYTRL+L++PHS+FRS FS LAQRN S
Sbjct: 703  LSGFSMNLCLKLALQMEEALFVSQVVPSIAMVETYTRLLLISPHSMFRSHFSQLAQRNAS 762

Query: 720  LLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLC 779
            LL+K GVT LVLEI+NYRLLPLYRYQGK+KTLMYD+TKIISALK KRGDHR+ RLAENLC
Sbjct: 763  LLSKPGVTLLVLEILNYRLLPLYRYQGKSKTLMYDVTKIISALKGKRGDHRIFRLAENLC 822

Query: 780  MNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQI 839
            MNLILS RDFFS+KREGKG TEFTETLNRIT++ LAI IKTRGIAD DH++YLQTMLEQI
Sbjct: 823  MNLILSLRDFFSVKREGKGPTEFTETLNRITIMTLAITIKTRGIADPDHMVYLQTMLEQI 882

Query: 840  MATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPT 899
            +ATSQHTWSEKT+R+FPSLLR+ L GR+DKRGL+IQAWQQAETTVINQCTQLLSPSA+P 
Sbjct: 883  LATSQHTWSEKTMRHFPSLLRETLKGRVDKRGLSIQAWQQAETTVINQCTQLLSPSAEPA 942

Query: 900  YVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVL 959
            YV TYLSHSFPQHRQYLCAGA +LMQGH ENINS NL RVLRE SPEEVT+NIYT+VDVL
Sbjct: 943  YVSTYLSHSFPQHRQYLCAGACLLMQGHAENINSTNLARVLREVSPEEVTANIYTLVDVL 1002

Query: 960  LHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITL 1019
            LHH+HV+LQ+G SL+ +L KA AN++FF  THE+LPLDI LLALIDRDDDPHAL I ++L
Sbjct: 1003 LHHVHVDLQQGQSLEAVLDKAGANLAFFFWTHEMLPLDIFLLALIDRDDDPHALIIAMSL 1062

Query: 1020 LDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLL 1079
            L   +L  R+K YC NRG PEHWL + +FKR ELQKALGNHLSWK+RYPTFFDDIAARLL
Sbjct: 1063 LKTPDLLLRIKNYCQNRGSPEHWLVTQVFKRNELQKALGNHLSWKDRYPTFFDDIAARLL 1122

Query: 1080 PVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRIL 1139
            PVIPL++YRLIEN+AM+ AD +L  +S FLAY+PLRF+FVRDILAYFYGHLPGKL++R+L
Sbjct: 1123 PVIPLVLYRLIENNAMEQADNLLLAHSHFLAYHPLRFTFVRDILAYFYGHLPGKLVLRML 1182

Query: 1140 NVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKS------- 1192
             V DLSKIPFSESFPQ+IS +   +CPPLDYFA+LLL LVNNVIP L+ +S         
Sbjct: 1183 KVLDLSKIPFSESFPQYISPTGAPVCPPLDYFASLLLNLVNNVIPPLSSSSNCSSRSGSM 1242

Query: 1193 GSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVS 1252
               +++S R PH K+P TSQ GP+N SEG+K FYQ QDPGTYTQLVLETAVIEILSLPVS
Sbjct: 1243 ADILNSSARPPHGKTPGTSQPGPANASEGQKAFYQIQDPGTYTQLVLETAVIEILSLPVS 1302

Query: 1253 ASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSV 1312
            A+QIVSSLVQI+VNIQ TLIQ+ NG +GA+N VGQGSVLPTSPSGGSTDS+ ASRST  +
Sbjct: 1303 AAQIVSSLVQIIVNIQSTLIQSGNGFHGAANGVGQGSVLPTSPSGGSTDSMSASRSTCLI 1362

Query: 1313 SGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGK 1372
             GINT+SFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFH+QLY+EA+R+ +E+WWL DGK
Sbjct: 1363 PGINTASFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHVQLYLEAARVTRETWWLKDGK 1422

Query: 1373 RSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRP 1432
            RS GELDSAVGYAL+DPTWAAQDNTSTAIGNIVALLH+FFSNLPQEWL+GT+ II +LRP
Sbjct: 1423 RSQGELDSAVGYALMDPTWAAQDNTSTAIGNIVALLHAFFSNLPQEWLDGTNAIITNLRP 1482

Query: 1433 ITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIAD 1492
            +TSVAMLR+VFRIMGPLLPRL + HTLFNKTL LLL+ + DV+GK     APVEAS+IAD
Sbjct: 1483 VTSVAMLRVVFRIMGPLLPRLASTHTLFNKTLMLLLSALVDVFGKTAQTTAPVEASQIAD 1542

Query: 1493 LIDFLHHVVHYEGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYA 1552
            LIDFLHH++HYEGQGG VQ SSKPRP++L L GRAAE+LRP+VQHLL+HLK + NSSIYA
Sbjct: 1543 LIDFLHHIIHYEGQGGAVQTSSKPRPDILALIGRAAETLRPDVQHLLAHLKTNPNSSIYA 1602

Query: 1553 ATH 1555
            A H
Sbjct: 1603 AAH 1605

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity).
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9W1X7\|MED23_DROME Mediator of RNA polymerase II transcription subunit 23 OS=Drosophila melanogaster GN=MED23 PE=1 SV=1	Back alignment and function description

>sp\|Q55BN0\|MED23_DICDI Putative mediator of RNA polymerase II transcription subunit 23 OS=Dictyostelium discoideum GN=med23 PE=3 SV=1	Back alignment and function description

>sp\|Q16HH9\|MED23_AEDAE Mediator of RNA polymerase II transcription subunit 23 OS=Aedes aegypti GN=MED23 PE=3 SV=1	Back alignment and function description

>sp\|Q5RIW8\|MED23_DANRE Mediator of RNA polymerase II transcription subunit 23 OS=Danio rerio GN=med23 PE=2 SV=2	Back alignment and function description

>sp\|Q5EB59\|MED23_RAT Mediator of RNA polymerase II transcription subunit 23 OS=Rattus norvegicus GN=Med23 PE=2 SV=2	Back alignment and function description

>sp\|Q9ULK4\|MED23_HUMAN Mediator of RNA polymerase II transcription subunit 23 OS=Homo sapiens GN=MED23 PE=1 SV=2	Back alignment and function description

>sp\|Q80YQ2\|MED23_MOUSE Mediator of RNA polymerase II transcription subunit 23 OS=Mus musculus GN=Med23 PE=1 SV=2	Back alignment and function description

>sp\|Q6P423\|MED23_XENLA Mediator of RNA polymerase II transcription subunit 23 OS=Xenopus laevis GN=med23 PE=2 SV=1	Back alignment and function description

>sp\|Q60UZ5\|MED23_CAEBR Mediator of RNA polymerase II transcription subunit 23 OS=Caenorhabditis briggsae GN=sur-2 PE=3 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1563
255586806		1613	conserved hypothetical protein [Ricinus	0.995	0.964	0.819	0.0
356530772		1615	PREDICTED: uncharacterized protein LOC10	0.997	0.965	0.779	0.0
359472598		1663	PREDICTED: uncharacterized protein LOC10	0.960	0.903	0.801	0.0
297737648		1550	unnamed protein product [Vitis vinifera]	0.955	0.963	0.774	0.0
334182788		1592	uncharacterized protein [Arabidopsis tha	0.978	0.960	0.726	0.0
15220680		1615	uncharacterized protein [Arabidopsis tha	0.980	0.949	0.719	0.0
297845394		1637	hypothetical protein ARALYDRAFT_472581 [	0.987	0.942	0.719	0.0
9295691		1583	F26F24.8 [Arabidopsis thaliana]	0.966	0.953	0.708	0.0
218191522		1565	hypothetical protein OsI_08822 [Oryza sa	0.987	0.985	0.675	0.0
115448499		1620	Os02g0732700 [Oryza sativa Japonica Grou	0.991	0.956	0.659	0.0

>gi\|255586806\|ref\|XP_002534017.1\| conserved hypothetical protein [Ricinus communis] gi\|223525976\|gb\|EEF28365.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score = 2635 bits (6831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1328/1620 (81%), Positives = 1434/1620 (88%), Gaps = 64/1620 (3%)

Query: 1    MDQNQSQRSSIGAATASSASSRAYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPNKT 60
            MDQNQ    SI A TA+S   R YQF PARAAIIDLFNLYLGRSSRQK DDS R+PPNKT
Sbjct: 1    MDQNQR---SIAATTAAS---RGYQFQPARAAIIDLFNLYLGRSSRQKHDDSTREPPNKT 54

Query: 61   QKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFI 120
            QKRVLALNRELPPRNEQFLI+FEQLQSQFPDQDQLRSVTESVLIS+V+QCC+H PRAEF+
Sbjct: 55   QKRVLALNRELPPRNEQFLINFEQLQSQFPDQDQLRSVTESVLISLVIQCCNHAPRAEFL 114

Query: 121  LFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGI 180
            LFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQ  Q + A+S+ +  Q+ +LP+SS I
Sbjct: 115  LFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQAGQTVSAISSMNSSQNVILPSSSAI 174

Query: 181  PNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQQFTTRVNSS- 239
            PNSSN+Q SNP SPL SVHGIGSP QSAIE S+ A +SPVKSSD+S  GQ  T+RVN S 
Sbjct: 175  PNSSNFQPSNPTSPLASVHGIGSPVQSAIEPSLLATVSPVKSSDISGNGQPSTSRVNLSS 234

Query: 240  -----------------------------------------------QGIDESDG-KSWR 251
                                                            G+DESD  +SWR
Sbjct: 235  RDNAINSLRQLCCKIILTGLEFNLKPATHSEIFHHMLNWLVNWDQRQHGVDESDSVRSWR 294

Query: 252  LDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRR 311
             +KALIEWL SCLDVIWLLVDE++CRVPFYELLR+GLQFIENIPDDEALFTLILEIHRRR
Sbjct: 295  PEKALIEWLRSCLDVIWLLVDENKCRVPFYELLRSGLQFIENIPDDEALFTLILEIHRRR 354

Query: 312  DMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDL 371
            DMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAA NLRYSPITYPSVLGEPLHGEDL
Sbjct: 355  DMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAANLRYSPITYPSVLGEPLHGEDL 414

Query: 372  ATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMIS 431
            A SIQRGSLDWERA+RCIRHA+R TPSPDWWKRVLLVAP YRNPA GPTPGAVF   MI 
Sbjct: 415  ANSIQRGSLDWERALRCIRHALRTTPSPDWWKRVLLVAPSYRNPAHGPTPGAVFVSSMIC 474

Query: 432  EAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHI 491
            EA IDRIVELLKLTNSEVNCW +WL+FSD+ FFL+KSGCIDFVDFVDKLV+RL +GD HI
Sbjct: 475  EATIDRIVELLKLTNSEVNCWQEWLVFSDILFFLMKSGCIDFVDFVDKLVARLTEGDQHI 534

Query: 492  LRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFIS 551
            LRTNH+TWLLAQIIRVE+V+ AL +D+RKVETTRKI+SFHREDR +DPNNPQSILLDFIS
Sbjct: 535  LRTNHMTWLLAQIIRVEIVVNALTTDARKVETTRKIMSFHREDRSSDPNNPQSILLDFIS 594

Query: 552  SCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVS 611
            SCQNLRIWSLNTSTREYLN+EQLQKGKQIDEWWR V+KGDRM+DYMNMDDRS+GMFWVVS
Sbjct: 595  SCQNLRIWSLNTSTREYLNSEQLQKGKQIDEWWRTVTKGDRMIDYMNMDDRSIGMFWVVS 654

Query: 612  YTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKL 671
            YTM+QPACETV+NWLSSAGV+EL  G+++  NERLMVMREVNPLP+SLL+G SLNLCLKL
Sbjct: 655  YTMSQPACETVVNWLSSAGVSEL-AGTSMQSNERLMVMREVNPLPISLLSGLSLNLCLKL 713

Query: 672  ALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVL 731
              Q+EDS+F GQV+ SIAMVETY RL+L+APHSLFRS FSHLAQR PSLL+K GVT LV 
Sbjct: 714  VFQLEDSLFAGQVIPSIAMVETYCRLLLIAPHSLFRSHFSHLAQRYPSLLSKPGVTLLVF 773

Query: 732  EIVNYRLLPLYR-----YQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQ 786
            EIVNYRLLPLYR     YQGK+K+LMYD+TKI+S LK KRGDHRV RLAENLCMNLILS 
Sbjct: 774  EIVNYRLLPLYRQEHVEYQGKSKSLMYDVTKIVSTLKGKRGDHRVFRLAENLCMNLILSL 833

Query: 787  RDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHT 846
            RDFFS+KREGKG TEFTETLNR+TVI LAIIIKTRGIADADH+LYLQTMLEQIMATSQHT
Sbjct: 834  RDFFSVKREGKGPTEFTETLNRVTVITLAIIIKTRGIADADHLLYLQTMLEQIMATSQHT 893

Query: 847  WSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLS 906
            WSEKTLRYFPSLL DAL GRIDKRGL IQ WQQ ETTVINQCTQLLSPSA+P YV TY++
Sbjct: 894  WSEKTLRYFPSLLHDALSGRIDKRGLAIQEWQQTETTVINQCTQLLSPSAEPAYVMTYIN 953

Query: 907  HSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVE 966
            HSFPQHRQYLCAGAWILMQGHPENINS NL RVLREFSPEEVTSNIYTMVDVLLH I +E
Sbjct: 954  HSFPQHRQYLCAGAWILMQGHPENINSVNLARVLREFSPEEVTSNIYTMVDVLLHRIQME 1013

Query: 967  LQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQ 1026
            LQ GHSLQDLL K CAN++FFV  HELLPLDILLLAL DRDDDPHALRIVI+LLDRQELQ
Sbjct: 1014 LQHGHSLQDLLLKTCANLAFFVWGHELLPLDILLLALTDRDDDPHALRIVISLLDRQELQ 1073

Query: 1027 QRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIV 1086
            QRVKL+CMNRGPPEHWL+SG+FKR+ELQKALGNHLSWK+RYPTFFDDIAARLLPVIPLIV
Sbjct: 1074 QRVKLFCMNRGPPEHWLFSGVFKRLELQKALGNHLSWKDRYPTFFDDIAARLLPVIPLIV 1133

Query: 1087 YRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSK 1146
            YRL+ENDA+D ADRVLA YS FLAY+PLRF+FVRDILAYFYGHLPGKLIVRILNV DLSK
Sbjct: 1134 YRLVENDAIDPADRVLAMYSPFLAYHPLRFTFVRDILAYFYGHLPGKLIVRILNVLDLSK 1193

Query: 1147 IPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDA---SLRAP 1203
            IPFSESFPQHISSSNPVMCPP +YFATLLLGLVNNV+P LN NSK GS  D    SLR P
Sbjct: 1194 IPFSESFPQHISSSNPVMCPPPEYFATLLLGLVNNVLPPLNTNSKYGSLGDGLCNSLRNP 1253

Query: 1204 HNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQI 1263
            + K+P TSQSGP+N+S+ +K FYQ QDPGTYTQLVLETAVIE+LSLPV+ASQIVSSLVQI
Sbjct: 1254 NTKTPATSQSGPTNISDAQKAFYQIQDPGTYTQLVLETAVIELLSLPVTASQIVSSLVQI 1313

Query: 1264 VVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSR 1323
            VVNIQPTLIQ+SNG +GASN  GQGSVLPTSPSGGSTDSLGASRS PSVSGINT++FVSR
Sbjct: 1314 VVNIQPTLIQSSNGLHGASNGAGQGSVLPTSPSGGSTDSLGASRSNPSVSGINTATFVSR 1373

Query: 1324 SGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVG 1383
            SGYTCQQLSCLLIQACGLLLAQLPPDFH+QLYMEASRIIKESWWL D KRSLGELDSAVG
Sbjct: 1374 SGYTCQQLSCLLIQACGLLLAQLPPDFHLQLYMEASRIIKESWWLTDAKRSLGELDSAVG 1433

Query: 1384 YALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVF 1443
            YALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTH I+KHLRPITSVAMLRI F
Sbjct: 1434 YALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHAIVKHLRPITSVAMLRIAF 1493

Query: 1444 RIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHY 1503
            RIMGPLLPRL NAH+LFNKTL LLLNTM DV+G+N+ P  PVEASEIADLIDFLHHV+HY
Sbjct: 1494 RIMGPLLPRLANAHSLFNKTLLLLLNTMVDVFGRNSQPSTPVEASEIADLIDFLHHVIHY 1553

Query: 1504 EGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKMVQNPS 1563
            EGQGGPVQA+SKPR EVL L GRAAESLRP++QHLLSHLKPDVNSSIYAATHPK+VQNPS
Sbjct: 1554 EGQGGPVQANSKPRAEVLALCGRAAESLRPDIQHLLSHLKPDVNSSIYAATHPKLVQNPS 1613

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356530772\|ref\|XP_003533954.1\| PREDICTED: uncharacterized protein LOC100798789 [Glycine max]	Back alignment and taxonomy information

>gi\|359472598\|ref\|XP_002281148.2\| PREDICTED: uncharacterized protein LOC100262719 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297737648\|emb\|CBI26849.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|334182788\|ref\|NP_001185071.1\| uncharacterized protein [Arabidopsis thaliana] gi\|332192239\|gb\|AEE30360.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|15220680\|ref\|NP_173737.1\| uncharacterized protein [Arabidopsis thaliana] gi\|395406782\|sp\|F4I4P3.1\|MED23_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit 23 gi\|332192238\|gb\|AEE30359.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297845394\|ref\|XP_002890578.1\| hypothetical protein ARALYDRAFT_472581 [Arabidopsis lyrata subsp. lyrata] gi\|297336420\|gb\|EFH66837.1\| hypothetical protein ARALYDRAFT_472581 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|9295691\|gb\|AAF86997.1\|AC005292_6 F26F24.8 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|218191522\|gb\|EEC73949.1\| hypothetical protein OsI_08822 [Oryza sativa Indica Group]	Back alignment and taxonomy information

>gi\|115448499\|ref\|NP_001048029.1\| Os02g0732700 [Oryza sativa Japonica Group] gi\|46390660\|dbj\|BAD16142.1\| unknown protein [Oryza sativa Japonica Group] gi\|113537560\|dbj\|BAF09943.1\| Os02g0732700 [Oryza sativa Japonica Group] gi\|222623623\|gb\|EEE57755.1\| hypothetical protein OsJ_08276 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1563
TAIR\|locus:2028040		1615	AT1G23230 "AT1G23230" [Arabido	0.838	0.811	0.738	0.0
DICTYBASE\|DDB_G0270434		1662	med23 "putative mediator compl	0.263	0.247	0.233	5.8e-13
FB\|FBgn0034795		1439	MED23 "Mediator complex subuni	0.323	0.351	0.211	9.6e-12
ZFIN\|ZDB-GENE-040724-82		1387	med23 "mediator complex subuni	0.412	0.465	0.199	3.9e-07
UNIPROTKB\|F1N8H3		1392	MED23 "Uncharacterized protein	0.411	0.461	0.201	3.2e-05
UNIPROTKB\|Q9ULK4		1368	MED23 "Mediator of RNA polymer	0.417	0.477	0.199	0.0003
RGD\|1307671		1367	Med23 "mediator complex subuni	0.445	0.509	0.193	0.0003
UNIPROTKB\|Q5EB59		1367	Med23 "Mediator of RNA polymer	0.445	0.509	0.193	0.0003

TAIR\|locus:2028040 AT1G23230 "AT1G23230" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 5140 (1814.4 bits), Expect = 0., Sum P(2) = 0.
 Identities = 991/1342 (73%), Positives = 1124/1342 (83%)

Query:   241 GIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEAL 300
             G ++S GKSWR +K L EWL SCLDVIWLLV+E   R+PFYELLR+GLQFIENIPDDEAL
Sbjct:   269 GTEDSVGKSWRSEKTLAEWLRSCLDVIWLLVEEGESRIPFYELLRSGLQFIENIPDDEAL 328

Query:   301 FTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPS 360
             FTLI+EIHRRRD MAMHM MLDQHLHCP+FGTHRI+SQ T N+  EA  +LR+SPITYPS
Sbjct:   329 FTLIMEIHRRRDAMAMHMLMLDQHLHCPSFGTHRIVSQITANVPPEAVPHLRHSPITYPS 388

Query:   361 VLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQ-GP 419
             VLGEPL+GEDLA SI +GSLDWERA+RCIRHAIR TPSPDWWKRVL+VAPCYR   Q GP
Sbjct:   389 VLGEPLYGEDLAMSIPKGSLDWERAVRCIRHAIRTTPSPDWWKRVLVVAPCYRPSTQAGP 448

Query:   420 TPGAVFTYDMISEAVIDRIVELLKLTNS-------------------EVNCWHDWLIFSD 460
              PGAVFT DMI EA+IDRIVELLKLTNS                   + NCW +WL+FSD
Sbjct:   449 IPGAVFTSDMICEAIIDRIVELLKLTNSGNDCFGIDLVSVTFPPLYADANCWQEWLVFSD 508

Query:   461 VFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRK 520
             +FFFL+KSGC DFVDF+DKLV RL   DNHILRTNHVTWLLAQIIRVELVM ALNSD++K
Sbjct:   509 IFFFLIKSGCTDFVDFIDKLVLRLNGVDNHILRTNHVTWLLAQIIRVELVMTALNSDAKK 568

Query:   521 VETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQI 580
             VETTRKILSFHREDR +DPNNPQS+LLDF+SSCQNLRIWSL+T+TR YLNNEQL KGKQI
Sbjct:   569 VETTRKILSFHREDRNSDPNNPQSVLLDFVSSCQNLRIWSLSTTTRAYLNNEQLLKGKQI 628

Query:   581 DEWWRQVSKGXXXXXXXXXXXXSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNL 640
             DEWWR  SKG            S+GMFWVVSYTMAQPACETV+NWLSSAG+ EL PG  L
Sbjct:   629 DEWWR--SKGERMMDYMNMDDRSIGMFWVVSYTMAQPACETVINWLSSAGMAEL-PG--L 683

Query:   641 PPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLL 700
              PN+R+M+ +EV PLPMSLL+GFS+NLCLKLALQME+++F  QVV SIAMVETYTRL+L+
Sbjct:   684 QPNDRVMMTQEVTPLPMSLLSGFSMNLCLKLALQMEEALFVSQVVPSIAMVETYTRLLLI 743

Query:   701 APHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIIS 760
             +PHS+FRS FS LAQRN SLL+K GVT LVLEI+NYRLLPLYRYQGK+KTLMYD+TKIIS
Sbjct:   744 SPHSMFRSHFSQLAQRNASLLSKPGVTLLVLEILNYRLLPLYRYQGKSKTLMYDVTKIIS 803

Query:   761 ALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKT 820
             ALK KRGDHR+ RLAENLCMNLILS RDFFS+KREGKG TEFTETLNRIT++ LAI IKT
Sbjct:   804 ALKGKRGDHRIFRLAENLCMNLILSLRDFFSVKREGKGPTEFTETLNRITIMTLAITIKT 863

Query:   821 RGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQA 880
             RGIAD DH++YLQTMLEQI+ATSQHTWSEKT+R+FPSLLR+ L GR+DKRGL+IQAWQQA
Sbjct:   864 RGIADPDHMVYLQTMLEQILATSQHTWSEKTMRHFPSLLRETLKGRVDKRGLSIQAWQQA 923

Query:   881 ETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVL 940
             ETTVINQCTQLLSPSA+P YV TYLSHSFPQHRQYLCAGA +LMQGH ENINS NL RVL
Sbjct:   924 ETTVINQCTQLLSPSAEPAYVSTYLSHSFPQHRQYLCAGACLLMQGHAENINSTNLARVL 983

Query:   941 REFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHEXXXXXXXX 1000
             RE SPEEVT+NIYT+VDVLLHH+HV+LQ+G SL+ +L KA AN++FF  THE        
Sbjct:   984 REVSPEEVTANIYTLVDVLLHHVHVDLQQGQSLEAVLDKAGANLAFFFWTHEMLPLDIFL 1043

Query:  1001 XXXXXXXXXXHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNH 1060
                       HAL I ++LL   +L  R+K YC NRG PEHWL + +FKR ELQKALGNH
Sbjct:  1044 LALIDRDDDPHALIIAMSLLKTPDLLLRIKNYCQNRGSPEHWLVTQVFKRNELQKALGNH 1103

Query:  1061 LSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVR 1120
             LSWK+RYPTFFDDIAARLLPVIPL++YRLIEN+AM+ AD +L  +S FLAY+PLRF+FVR
Sbjct:  1104 LSWKDRYPTFFDDIAARLLPVIPLVLYRLIENNAMEQADNLLLAHSHFLAYHPLRFTFVR 1163

Query:  1121 DILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVN 1180
             DILAYFYGHLPGKL++R+L V DLSKIPFSESFPQ+IS +   +CPPLDYFA+LLL LVN
Sbjct:  1164 DILAYFYGHLPGKLVLRMLKVLDLSKIPFSESFPQYISPTGAPVCPPLDYFASLLLNLVN 1223

Query:  1181 NVIPAL----NYNSKSGSTMD---ASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGT 1233
             NVIP L    N +S+SGS  D   +S R PH K+P TSQ GP+N SEG+K FYQ QDPGT
Sbjct:  1224 NVIPPLSSSSNCSSRSGSMADILNSSARPPHGKTPGTSQPGPANASEGQKAFYQIQDPGT 1283

Query:  1234 YTQLVLETAVIEILSLPXXXXXXXXXXXXXXXXXXPTLIQTSNGPYGASNSVGQGSVLPT 1293
             YTQLVLETAVIEILSLP                   TLIQ+ NG +GA+N VGQGSVLPT
Sbjct:  1284 YTQLVLETAVIEILSLPVSAAQIVSSLVQIIVNIQSTLIQSGNGFHGAANGVGQGSVLPT 1343

Query:  1294 SPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQ 1353
             SPSGGSTDS+ ASRST  + GINT+SFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFH+Q
Sbjct:  1344 SPSGGSTDSMSASRSTCLIPGINTASFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHVQ 1403

Query:  1354 LYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFS 1413
             LY+EA+R+ +E+WWL DGKRS GELDSAVGYAL+DPTWAAQDNTSTAIGNIVALLH+FFS
Sbjct:  1404 LYLEAARVTRETWWLKDGKRSQGELDSAVGYALMDPTWAAQDNTSTAIGNIVALLHAFFS 1463

Query:  1414 NLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGD 1473
             NLPQEWL+GT+ II +LRP+TSVAMLR+VFRIMGPLLPRL + HTLFNKTL LLL+ + D
Sbjct:  1464 NLPQEWLDGTNAIITNLRPVTSVAMLRVVFRIMGPLLPRLASTHTLFNKTLMLLLSALVD 1523

Query:  1474 VYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVLTGRAAESLRP 1533
             V+GK     APVEAS+IADLIDFLHH++HYEGQGG VQ SSKPRP++L L GRAAE+LRP
Sbjct:  1524 VFGKTAQTTAPVEASQIADLIDFLHHIIHYEGQGGAVQTSSKPRPDILALIGRAAETLRP 1583

Query:  1534 EVQHLLSHLKPDVNSSIYAATH 1555
             +VQHLL+HLK + NSSIYAA H
Sbjct:  1584 DVQHLLAHLKTNPNSSIYAAAH 1605

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

DICTYBASE\|DDB_G0270434 med23 "putative mediator complex subunit 23" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

FB\|FBgn0034795 MED23 "Mediator complex subunit 23" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040724-82 med23 "mediator complex subunit 23" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N8H3 MED23 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9ULK4 MED23 "Mediator of RNA polymerase II transcription subunit 23" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1307671 Med23 "mediator complex subunit 23" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5EB59 Med23 "Mediator of RNA polymerase II transcription subunit 23" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4I4P3	MED23_ARATH	No assigned EC number	0.7196	0.9808	0.9492	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1563
pfam11573		1341	pfam11573, Med23, Mediator complex subunit 23	5e-24

>gnl\|CDD\|221138 pfam11573, Med23, Mediator complex subunit 23	Back alignment and domain information

 Score =  110 bits (276), Expect = 5e-24
 Identities = 138/744 (18%), Positives = 247/744 (33%), Gaps = 127/744 (17%)

Query: 597  MNMDDRSVGMFWVVS--YTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNP 654
            +N D  +     ++   Y+         M  L           S    +     +    P
Sbjct: 478  LNFDMGNDYRLALLCNAYSTNTEYFSRPMPALIETLNGNSKNSSPFGLSYSRQAVNPFVP 537

Query: 655  LPMSLLTGFS-----------LNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLA-- 701
              + +L   +           L   +K A          +     A+VETY+RL++    
Sbjct: 538  FSVEVLDSLTVHSKMSLIHSILTHLIKQAQSKLPVPAVFETAP--ALVETYSRLLVYTEI 595

Query: 702  PHSLFRSLFSHLAQRNPSLLA----KVGVTPLVLEIVNYRL---LPLYRYQGKTKTLMYD 754
                 R L   L               G    +LE+++YRL      YR Q     L + 
Sbjct: 596  ESLGIRGLLGQLLPLRSLNEVFKSQAWGQLHTLLEMLSYRLHHVHSHYRVQ----LLSHL 651

Query: 755  ITKIISALKVKRGDHRVLRLAENLCMNLILS----------QRDFFSLKREGKGSTEFTE 804
             +    A      + ++    E+  + LI             R     K+     +  +E
Sbjct: 652  HS---LASVNTTNNMQLHSCVESTALRLIQGLGSSEVQNQFSRYLRHCKQPKTIVSPESE 708

Query: 805  TLNRITVIALAIIIKTRGIADADHVLYLQT----MLEQIMATSQHTWSEKTLRYFPSLLR 860
             LN+  ++ LA  +K   I    +    QT     L  IM  + H W E TL  FP  L 
Sbjct: 709  ELNKALILTLARAMK---ITGTGNDPQSQTWCKDFLANIMQNTPHGWPEHTLSCFPPWLN 765

Query: 861  DALIGRIDKRGLTIQAWQQAET-TVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAG 919
            +       K+    +   QA   +V  +  +  S + +   +  +     P    +LC  
Sbjct: 766  EYF-----KQHNVPKEPNQALKKSVEEEYRRWNSMTNENDIIIRFGDPGTPP--LFLCLL 818

Query: 920  AWILMQGHPENIN-SANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLF 978
              +LM    E  N S    ++L    P+ +  ++    D ++  +             + 
Sbjct: 819  FKMLMWNQHETDNISPVFYKILERIGPKALVVHLRKFCDYIVAEVSNSQDGNQ-----VN 873

Query: 979  KACANISFFVLTHELLPLDILLLALIDRD-DDPHALR----IVITLLDRQELQQRVKLYC 1033
            K    I+  +    ++ +D L+L LI R  +   A        + LL   E + RV+ + 
Sbjct: 874  KCIDTINDMIWKFNIITIDRLVLCLILRPHEGNDAQICFQIAQLLLLKTNEFRNRVQEFV 933

Query: 1034 MNRGPPEHWLYSGLFKRV--------------ELQKALGNHLSWKERY-PTFFDDIAARL 1078
             N  PPEHW  S   K                E              + P +F ++  R 
Sbjct: 934  KNN-PPEHWKQSNYHKAHLKYHQKFPEKFAFEESASHPSQPDEPSNVHLPVYFGNVCLRF 992

Query: 1079 LPVIPLIVYRLIENDAMD---SADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPG--- 1132
            LPV+ + ++R +E        + D +L   S    ++    +F+ + L Y+   L G   
Sbjct: 993  LPVLDIYIHRYLEQQGYKLSKTLDTILDHLSMLYKFHDRPITFLYNTLHYYERLLRGRDK 1052

Query: 1133 -KLIVRILNVFDLSKIPFS------ESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPA 1185
              L+  I+      +            +    SS      P L Y+  L+  +V      
Sbjct: 1053 KSLVSAIIGSLKDVRPANWALTEAYLKYNMQKSSDEVNW-PELSYYMELIGRMV------ 1105

Query: 1186 LNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIE 1245
                     T+D     P           P   ++ R  F +  +P  +    L    IE
Sbjct: 1106 --------DTIDGINPPP-----------PFVATDWR--FNEFPNPPAHA---LYVTCIE 1141

Query: 1246 ILSLPVSASQIVSSLVQIVVNIQP 1269
            +++LPVS  ++ ++L+ ++V   P
Sbjct: 1142 LMALPVSPEKVANALIDVIVKGYP 1165

Med23 is one of the subunits of the Tail portion of the Mediator complex that regulates RNA polymerase II activity. Med23 is required for heat-shock-specific gene expression, and has been shown to mediate transcriptional activation of E1A in mice. Length = 1341

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1563
KOG1883		1517	consensus Cofactor required for Sp1 transcriptiona	100.0
PF11573		1341	Med23: Mediator complex subunit 23; InterPro: IPR0	100.0
KOG1883		1517	consensus Cofactor required for Sp1 transcriptiona	100.0

>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]	Back alignment and domain information

Probab=100.00  E-value=2.7e-269  Score=2353.20  Aligned_cols=1372  Identities=23%  Similarity=0.242  Sum_probs=1247.7

Q ss_pred             CCccccccccccccccccccccccccchhhHhHHHHHHhhhcCCCCcCCCCCcCCCCchhhhHHhhccCCCCCCcchhhh
Q 000403            1 MDQNQSQRSSIGAATASSASSRAYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPNKTQKRVLALNRELPPRNEQFLI   80 (1563)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~krv~a~~~~~~p~~~qf~~   80 (1563)
                      |||++  | .++++.+   +||.++|||+|++++|+|+||+|+.+|+|++.++|+++|||||||++-|+++||+||||++
T Consensus         1 ~~~s~--~-~~met~~---~s~~~e~~~v~~i~~~~~sl~~~~~~rek~r~~~s~~~d~t~~r~~~~n~~~qe~~eQ~ll   74 (1517)
T KOG1883|consen    1 KPGSA--E-DTMETQD---TSSPQEVQKVNRIKEAFKSLVEENPTREKFRPLTSNIGDETALRIQFGNMMMQEKEEQSLL   74 (1517)
T ss_pred             CCcch--h-hhhhccc---cccHHHHhhHHHHHHHHHHHhhcCCcccccchhhcCCCchhhHHHhcCCCCCCchhHHHHH
Confidence            45555  7 6777777   8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhccCCChhHHhHHHHHHHhhhhhhcCCCCcchhHHHHHHHHhhhcccccccccHHHHhhhhhhhcccccCCcccc
Q 000403           81 DFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQGSQAM  160 (1563)
Q Consensus        81 df~~l~~q~~~~~ql~~~te~~~~~~~~qc~~h~p~~~fll~~~~~l~~~~~~~~d~~l~~~~~~~~~~e~~~~q~~~~~  160 (1563)
                      ||+-++.+|.+.+|.|.++|++|+++|.||++||||++|++|   .||++|||+  ++|+++.|+++.+|.+..||+++.
T Consensus        75 ~~~l~~~h~~~~~~~r~~~~~~l~~lVdq~l~~a~~~~~i~~---~LC~~~li~--t~l~~l~s~i~ae~~kli~~vi~~  149 (1517)
T KOG1883|consen   75 KELLKMVHGVAEKPDRVFLGTNLERLVDQLLRYARQKGAIST---NLCAEGLIM--TSLFRLCSRIWAEKFKLINDVIPK  149 (1517)
T ss_pred             HHHHHHHhccCCccceehHHHHHHHHHHHhccccchhhhHHH---HHHHHHHhh--cchHHHHHHHHHHHHHHHhhhhhh
Confidence            999999999999999999999999999999999999999999   899999999  999999999999999999999986


Q ss_pred             cccccccccccCCCCCCCCCCCCCCccCCCCCCCCCCccCCCCCcccccc-----------------ccccccccccccc
Q 000403          161 PAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIE-----------------TSVCAAMSPVKSS  223 (1563)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~g~~~~~~~~-----------------~~~~~~~~~~~~~  223 (1563)
                      .+..+    ..++++.                 -|.|.||+ +|..+..+                 --+|.-=+-..+.
T Consensus       150 vdykG----vr~ilkv-----------------ilesa~~~-~P~svsv~~V~Qi~~a~~vir~i~dRns~llpa~~~~~  207 (1517)
T KOG1883|consen  150 VDYKG----VRNILKV-----------------ILESALRR-LPYSVSVEQVNQILAAENVIRHIVDRNSCLLPAYFTLS  207 (1517)
T ss_pred             hchhh----HHHHHHH-----------------HHHHHhcc-CCCccCHHHHHHHHHHHHHHHHHHhccccccchHHhHH
Confidence            65554    2233332                 34555665 55543221                 1112111233344


Q ss_pred             ccccCCC--c-cccc-----------ccCCCCcccCCCccccchhHHHHHHHHHHHHHHHHhcCCCcccchHHHhhcccc
Q 000403          224 DVSCTGQ--Q-FTTR-----------VNSSQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQ  289 (1563)
Q Consensus       224 ~~~~~~~--~-~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~w~~~c~~vi~~l~~e~~~rvpfy~l~~~~~q  289 (1563)
                      +|-..-.  . --.|           -.+..|+..+-|++|++++.+++| .+|||++|.|+-++ -|.|||+++|++.+
T Consensus       208 eImrg~p~~~l~h~~l~~~m~d~vv~fR~~a~~~~i~Gr~~~~pi~l~~~-~~~l~~~W~l~~~~-~r~pf~~~~~slpy  285 (1517)
T KOG1883|consen  208 EIMRGMPKQALMHWRLTELMADFVVHFRPTADLSSICGRGSVLPIVLHPG-FYPLTNSWELDGLT-LRFPFKGPHHSLPY  285 (1517)
T ss_pred             HHHhcCCcccccHHHHHHHHHHHHHHhcccccchhhcccccccccccccC-cccchhhheecccc-ccccccccccccCC
Confidence            4433211  0 0001           115556665659999999999999 99999999998888 99999999999999


Q ss_pred             ccccCCChhHHHHHHHHHhhchhhHHHHHhhhccccCCCCccccccccccCCccccccccccccccccCCcccCCCcchh
Q 000403          290 FIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGE  369 (1563)
Q Consensus       290 ~~e~~pddeal~~l~~e~hrrrd~~~~hm~~~dqhlhcptf~t~~~~~~~~~~~~~~~~~~lr~s~~ty~~~~ge~l~ge  369 (1563)
                      ++|++|||+|||++|||+|+|||.|||||+|.|||+|||||++|||.++.+.++-.||+.++|.|||+       +|.||
T Consensus       286 ~~E~~~~~~all~~Ileqp~~RDv~~Ml~L~~~qk~rcp~~~e~lI~~~I~a~e~~EAe~~~~~spi~-------~l~w~  358 (1517)
T KOG1883|consen  286 RPELTETQLALLRYILEQPYSRDVMAMLSLHKPQKQRCPTLEEQLISLMICAMEMAEAESLPETSPIP-------RLQWD  358 (1517)
T ss_pred             ChhhccchHHHHHHHHhhhcchhHHHHhhcCchhhhcCCcHHHHhHHHhhhccccccccccccCCCCC-------hhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999       99999


Q ss_pred             hhhhhccCCCccHHHHHHHHHHHhhcCCChhhhhhhheeccccCCCCC-CCCCcceeccchhhHHHHHHHHHHccccc--
Q 000403          370 DLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQ-GPTPGAVFTYDMISEAVIDRIVELLKLTN--  446 (1563)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~mi~ea~i~r~~~ll~~~~--  446 (1563)
                      +++++|.+|+|   ++++|+||++|+++      ++|+++||||...| ++++|+||+++|+|+|.+||++|++|++|  
T Consensus       359 ~Ls~~liygvl---~~~~~~~h~v~~l~------~~L~~~~~~r~rdq~mwI~~qviss~i~~~al~D~~lev~kL~n~l  429 (1517)
T KOG1883|consen  359 HLSSQLIYGVL---FQFLSFKHFVLVLH------NKLKRCKLTRGRDQLMWILLQVISSSIQKNALDDAFLEVVKLFNLL  429 (1517)
T ss_pred             HHHHHHHHHHH---HHHHhHHHHHHHHH------HHHhhcCcccccchhheeeHHHhhhhhhhhhHHHHHHHHHHHHHhh
Confidence            99999999999   99999999999998      99999999999999 99999999999999999999999999832  


Q ss_pred             ------------ccccchhhhHhhhhHHHHHHhcccccHHHHHHHHHHhhccCCccccccchHHHHHHHHHHHHHHHhhh
Q 000403          447 ------------SEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGAL  514 (1563)
Q Consensus       447 ------------~~~~~w~eWl~fsd~f~fl~~~~~~df~~~i~kL~~r~~~gd~~~~~~nhv~wll~q~i~~~~v~~~~  514 (1563)
                                  +.-+||++|+.|+|+|+||+|.||.||.|++++|        +|++|+ |+ |+|+|++|.+++|   
T Consensus       430 f~~dlv~~~~pdin~~~~~r~la~~~iwi~L~Kka~~Df~d~~~pl--------nh~Lr~-H~-~fLqq~vr~~~~m---  496 (1517)
T KOG1883|consen  430 FPGDLVWMGAPDINKALFARFLAAACIWIHLEKKACTDFADKMPPL--------NHTLRS-HI-KFLQQGVRNFDSM---  496 (1517)
T ss_pred             cCcceeeecCCCcCHHHHHHHHHHhhhhhhhhhhhccchhhccCcc--------cHHHHH-HH-HHHHHHHHhhhhc---
Confidence                        2238999999999999999999999999999999        889998 88 9999999999999   


Q ss_pred             hccccccchhhhhhhcccccCCCCCCCCcchhhhhhccccceEEEeeccchHHhhcHHHhhhhhhHHHHHHHhhcccccc
Q 000403          515 NSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMM  594 (1563)
Q Consensus       515 ~~~~~~v~t~~~ilsf~~~d~~~d~n~pq~~~~~f~~s~q~l~iw~~n~~~~~~l~~~~~q~~k~~~eww~~~~kg~~~~  594 (1563)
                       +|..|++++++|+  |++|+..|+++|++.|||+++||||+|||.+.+++|++++++++-+++ +|+||...     ||
T Consensus       497 -~n~~kia~l~niy--~~~t~~~~~~~Pm~~LLe~i~~~~t~ri~~lst~~~A~~~~t~lpv~~-lDslt~~s-----km  567 (1517)
T KOG1883|consen  497 -SNDAKIALLCNIY--RTSTNMEKFIVPMGQLLESISSNGTKRIPELSTKRMAVNSFTALPVEF-LDSLTVHS-----KM  567 (1517)
T ss_pred             -cchHHHHHHHHHH--hccccccccCCcHHHHHHHHhcCCccccCCCCcceeeecccchhhHHH-HHHHHHHH-----HH
Confidence             7889999999999  999999999999999999999999999999999999999999999999 99999966     89


Q ss_pred             cccccCccceeeeeeehhcccchhhhHHHHhhhcCccccccCCCCCCCCccccccccccccchhhhhhhhHHHHHHHHHH
Q 000403          595 DYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQ  674 (1563)
Q Consensus       595 d~~n~DD~~iaml~vlssT~a~P~~Dtvm~~l~~~~v~e~ipg~~~~pn~~i~a~~~~~PLpmslLDsLTvh~km~Li~q  674 (1563)
                      ||+++|++.++++|++..++|||.|+...+|.++++..+ .                                       
T Consensus       568 sli~~~~~~l~sf~tv~l~~aq~~~~va~~~~s~~~~~~-~---------------------------------------  607 (1517)
T KOG1883|consen  568 SLIHQCFQPLRSFSTVRLKSAQVKETVAKACESEDYEMA-V---------------------------------------  607 (1517)
T ss_pred             HHHHhcccccceeEEEEecccccchhhhhccccchhhhh-h---------------------------------------
Confidence            999999999999999999999999988999997766665 3                                       


Q ss_pred             HHHhhhcCCccCChhHHHHHHHhhhcccc-hhhHhh------------hhhhhhcCchhhh--hcchhhHHHHHhhccc-
Q 000403          675 MEDSIFGGQVVASIAMVETYTRLMLLAPH-SLFRSL------------FSHLAQRNPSLLA--KVGVTPLVLEIVNYRL-  738 (1563)
Q Consensus       675 I~~~lf~~~~vPSPAlVETYsRLLvyte~-sL~~k~------------f~~lsQ~~psv~k--a~g~l~~LLEilSYRL-  738 (1563)
                                    |.+|||+|+++|+|+ ++++|+            |  ++|.+|+|++  +|+.+|+++|++|||+ 
T Consensus       608 --------------~~le~~arllv~~ei~sl~isg~~~~~~~~~~~~F--lsqllptv~~~hay~~l~tl~~~~syr~h  671 (1517)
T KOG1883|consen  608 --------------ALLETYARLLVYVEIESLGISGEHQNVQAKDQCYF--LSQLLPTVFKHHAYSKLHTLVEMFSYRTH  671 (1517)
T ss_pred             --------------cccchhhhhheeeeeeccccCchhhhhhhHHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                          345666666666666 456665            6  8999999999  9999999999999999 


Q ss_pred             --cccccccCcchhHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcc---------ccccccCCCCcchhhHhHH
Q 000403          739 --LPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRD---------FFSLKREGKGSTEFTETLN  807 (1563)
Q Consensus       739 --~p~YRyq~ks~~llhsL~~ii~~~~nq~q~h~llr~lEs~~LrLIlsl~s---------f~~~q~~~~~ps~~SEELN  807 (1563)
                        +++||+|+.+.  +|.+..+  ++.|++|.|.   |+|++++|+|+++|+         ||..|.+|++|++||||||
T Consensus       672 hiq~~~r~~ll~~--l~~~~lv--p~~~~~g~h~---ci~s~a~rliTalk~ae~~~q~~~ffs~k~pg~~psa~seeLn  744 (1517)
T KOG1883|consen  672 HIQNHYRVQLLSR--LHELFLV--PQTNWAGLHL---CIESTALRLITALKSAEMQPQFARFFSDKVPGQVPSAESEELN  744 (1517)
T ss_pred             cCCchHHHHHHHH--HHHHHhh--HHHHhhhhhh---hHHHHHHHHHHHhcccchhHhHhhhcccCCCCcCcccccHHHH
Confidence              89999999996  9988777  8999999998   999999999999987         9999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccccchhhhhHHHHHHHHHhhCCCCCchhhhccCc-HHHHHHHhcccCCCCcchhhHHHHHHHHHH
Q 000403          808 RITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFP-SLLRDALIGRIDKRGLTIQAWQQAETTVIN  886 (1563)
Q Consensus       808 R~LIlTLARsiKitGiad~~~g~~~k~~L~~Im~ntph~WpekTLr~FP-~~L~e~f~~~~D~~~l~~q~~qql~~tV~e  886 (1563)
                      |++|+||||++||||++|.++|+|||+||++||++|||+||+|||+||| ..|.++|.+|    |.++++|||++|+|+|
T Consensus       745 R~~IlTlara~kvtggad~i~~vw~ktml~tIi~~t~h~W~ektls~FP~~aL~a~~~q~----~~~~en~qql~~~V~n  820 (1517)
T KOG1883|consen  745 RMLILTLARAVKVTGGADDIQGVWCKTMLPTIINTTPHGWPEKTLSCFPKWALDAIFAQN----NSPAENTQQLKKDVEN  820 (1517)
T ss_pred             HHHHHHHHHHhhcccCCCchhhHHHHHHHHHHHhcCCCCCchhhhhhCCcHHHHHHHhcC----CCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999 6777777766    8999999999999999


Q ss_pred             HHHhccCCCCChhhHhhhhcccCCCCCcchHHHHHHHhhCCCCCCChhhHHHHHhhcChhHHHHhhhhhhcceeeehhhc
Q 000403          887 QCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVE  966 (1563)
Q Consensus       887 e~r~~~Sms~E~~~V~~~i~hf~p~~~~fLC~l~~ml~~~~~e~I~~~~lyrVLe~ispr~vta~i~~fvDyLv~e~~~e  966 (1563)
                      |||+|+||+|||+||..|+.|.  .+|+|||+++...|.+++||||+++ |||||++||||+++|+||||||||++++  
T Consensus       821 e~r~~tSmsnen~~V~~yl~~~--~p~~~lCll~~~~m~~~teNIns~~-yrVLe~isprelva~~~tlvDyLvad~~--  895 (1517)
T KOG1883|consen  821 EYRMWTSMSNENDIVIHYLEDR--DPPLFLCLLFAYKMVDETENINSEF-YRVLEKISPRELVAHGRTLVDYLVADAK--  895 (1517)
T ss_pred             HHHHhcCCCCcchhhhhhccCC--CchhHHHHHHHHHhcccccccCHHH-HHHHHhcCHHHHHHHHHHHHHHhhhhhh--
Confidence            9999999999995555555553  4699999996666766799999999 9999999999999999999999999887  


Q ss_pred             cccCCchhHHHHHHHhHhhhhhhhccccchhhhhhhhccCCCCCc-----hhhHhhhhcCcHHHHHHHHHHHHcCCCCCc
Q 000403          967 LQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPH-----ALRIVITLLDRQELQQRVKLYCMNRGPPEH 1041 (1563)
Q Consensus       967 lq~g~~~Q~lv~kcv~~LndmIWkynIVpLDRLLL~LalR~dEgn-----~liIqlLLL~~~EFqqRV~~Fv~~~~spEH 1041 (1563)
                        .++++|++++||+++||+||||||++|+||||||||+|++||+     ++|||++|+++ |||+||++||++ |+|||
T Consensus       896 --t~~~~e~~l~k~~~~la~mvwkf~vl~lDrllL~Limr~~~~nda~vc~~Ia~~lLltp-df~~RI~~yck~-nsPeH  971 (1517)
T KOG1883|consen  896 --TSDCGEKTLKKCAKALALMVWKFNVLTLDRLLLCLIMRPHEGNDAQVCIQIAQLLLLTP-DFRNRIRWYCKQ-NSPEH  971 (1517)
T ss_pred             --cccchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccccCCcchhHHHHHHHHhcCH-HHHHHHHHHHhc-CCcch
Confidence              5778999999999999999999999999999999999998887     55556666555 999999999997 99999


Q ss_pred             cccccc------hhhhhhHHH---HhccC--CCCCCCCcchhhHHhhhcCchhHHHHHHHhcCc-hhhHHHHHHHhcccc
Q 000403         1042 WLYSGL------FKRVELQKA---LGNHL--SWKERYPTFFDDIAARLLPVIPLIVYRLIENDA-MDSADRVLATYSSFL 1109 (1563)
Q Consensus      1042 W~~s~~------fhrkfPEk~---lg~~l--s~~~~lPvYFgNvcLR~LPViDiVIhR~LE~~~-~k~letLL~~~g~LY 1109 (1563)
                      |+ ++|      ||++|||++   ++++.  +.++|||+||||||+|||||+|+|+|||||+++ .|.+++||+|+|.||
T Consensus       972 wl-~~~~~k~~~yhka~pe~~~~e~~~qyd~~~~~~lPtyf~~v~~RlLPV~d~vlhr~lE~~~~~k~~~~lL~hls~ly 1050 (1517)
T KOG1883|consen  972 WL-TEWIKKHVKYHKAYPEKEACELARQYDSSSNVHLPTYFGNVCLRLLPVMDQVLHRFLELQGVEKLLPQLLDHLSMLY 1050 (1517)
T ss_pred             hh-HHHHHHHHHHHHhcchHHHHHHHHhcCCccccCCccHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            99 888      899999965   55553  447899999999999999999999999999999 699999999999999


Q ss_pred             ccCCcchhhhhHhHHhhhccC---ch--HHHHHHHhhcccCCCCCCcchhhhccCCCCCCCCChHHHHHHHHHHHhcccc
Q 000403         1110 AYYPLRFSFVRDILAYFYGHL---PG--KLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIP 1184 (1563)
Q Consensus      1110 kYHd~PvTFvY~tLhYy~~~L---p~--kLV~~Ilg~Ld~~r~plSEsF~~y~~~~~~~~~P~~~Yy~~Ll~RLvnnvlp 1184 (1563)
                      ||||+|+|||||||||||+||   |+  |||.+|.++|++  ++|||+|.+|+++++..|||+++|||.||+||||++.+
T Consensus      1051 kfH~~pitflyntl~y~~~hL~~~p~kk~lv~a~~~~lse--i~lSE~f~k~~~q~~ap~~pel~y~~sLi~rLvdt~~~ 1128 (1517)
T KOG1883|consen 1051 KFHDRPITFLYNTLHYYEHHLRDRPLKKKLVLAIATQLSE--IRLSEAFEKFNHQKGAPWSPELDYYMSLIDRLVDTLDG 1128 (1517)
T ss_pred             hcCCCceehhHHHHHHHHhhhhcCcchhhHHHHHhhhhhh--CccchhHHHHhccCCCCCCCcHHHHHHHHHHHHhhcCC
Confidence            999999999999999999999   44  899999999988  66999999999999999999999999999999988843


Q ss_pred             ccccCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcccccCCCCcchhhhhhhcceeecccCCCCHHHHHHHHHHhh
Q 000403         1185 ALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIV 1264 (1563)
Q Consensus      1185 ~~~~~~~~~~~~~~s~~~~~~~~p~~s~~~p~~~s~~DwrF~EfpnPga~al~vL~tacIELLsLPvsp~~Vv~aLvdvv 1264 (1563)
                                    ++              +++|+.+||||+||+||++||+||   +|||+|++|++|..++++|+|++
T Consensus      1129 --------------~l--------------~~~f~ncdwR~~e~~n~~a~al~~---~cvelma~~~sgp~~asalinv~ 1177 (1517)
T KOG1883|consen 1129 --------------KL--------------TPPFVNCDWRFNEFPNPGAHALYV---TCVELMALPVSGPTVASALINVM 1177 (1517)
T ss_pred             --------------CC--------------CCCCcccccccccCCCcccccccc---chhhhcCCCCCcHhHHHHHHHHH
Confidence                          21              235666999999999999999995   77999999999998888877766


Q ss_pred             hcc----------------------------------------CccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000403         1265 VNI----------------------------------------QPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLG 1304 (1563)
Q Consensus      1265 v~~----------------------------------------~~~l~q~~~~~~~~~~~~~~~~~~Ptsps~~~~~~~~ 1304 (1563)
                      ++.                                        +.+.+|+++|+||.-+|+|+++++|++||+|.|++ +
T Consensus      1178 ~~~q~~~p~~~~~~na~~l~itaLP~~y~~~l~d~lv~vivnp~~t~~t~~~gf~~~~fd~~~~s~l~~~ps~a~Tl~-a 1256 (1517)
T KOG1883|consen 1178 QMKQHARPFNQLIVNATGLLITALPEPYWNALHDRLVAVIVNPQSTGETANLGFEFILFDFYEESLLLNEPSRARTLN-A 1256 (1517)
T ss_pred             hhCCCCCchhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHcCccccchhhcCCCceeeccccchhccccCCccchhhH-H
Confidence            544                                        44567889999999999999999999999999999 9


Q ss_pred             CCCCCCCccCcccccccccccccccchhhHHHHHHHHHHhcCChhHHHHHHHHHHHHhcc-CccccCCCCCccccccccc
Q 000403         1305 ASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKE-SWWLADGKRSLGELDSAVG 1383 (1563)
Q Consensus      1305 ~~~~~~~~~giN~~~~~~~~~~~~~~~s~l~INAiGLLLaaLP~~f~~~ly~ei~~vik~-~w~l~d~k~s~~elds~~~ 1383 (1563)
                      .++|+-.|+|||.-+|+||+ |||++++|..+++|||.+++||.+|+..+|.|..|..-+ .||++|++.+.+|.|  +|
T Consensus      1257 ~s~s~~lh~si~~lsf~sr~-yt~~ll~cvkte~~llyl~~L~~pfl~r~qle~~r~~~e~~~~l~d~l~s~~e~~--v~ 1333 (1517)
T KOG1883|consen 1257 ISHSVWLHCSISLLSFFSRE-YTERLLPCVKTEKQLLYLLHLVGPFLQRKQLESQRENFEIVVLLYDKLGSVDEEG--VE 1333 (1517)
T ss_pred             HHhHHHhhcchHHHHhhhHH-hHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhcC--Cc
Confidence            99999999999999999999 999999999999999999999999999999999999998 899999999999988  99


Q ss_pred             ccccCCcccccccCc-chhHHHHH-HHHHHHhcCChhhhhhHHHHHhhcCccchHHHHHHHHHHHhcchhhhhhhhhhhH
Q 000403         1384 YALLDPTWAAQDNTS-TAIGNIVA-LLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFN 1461 (1563)
Q Consensus      1384 y~l~d~t~a~q~~t~-t~~~~ilA-L~Ha~~~h~~~~~L~~~~~~i~~LrPv~Te~qL~~~~rLvGP~L~R~~~eR~~~~ 1461 (1563)
                      |...||.|+.++|+. +.+|++++ .+|++|.+++.+|..++.-++.+.||+++.++...+++.+||.+||.....+.+.
T Consensus      1334 l~ymdpicd~~yn~ky~~~Gdivkn~~~a~f~nLp~~l~drlrfi~~~s~p~~~~at~~~~~~s~~~~~pa~sS~q~p~~ 1413 (1517)
T KOG1883|consen 1334 LVYMDPICDFLYNCKYFFAGDIVKNTAEAIFANLPPKLRDRLRFITHQSEPTEEQATPPEKENSPEESTPAVSSLQAPLL 1413 (1517)
T ss_pred             eeecchHHHHHhhhhhhhhhHHHHHHHHHHHHcCCHHHHhhhhhhhhcccccccccccchhhcCcccCCcccccccCccC
Confidence            999999999999988 99999999 9999999999999999998889999999999999999999999999999989999


Q ss_pred             HHHHHHHHHHHhhhccCCCCCCCccchhhhhhhhhhceeeEEeccCCCCCCCCCCchhhhhhhhHhhhhCCHhHHHHhcc
Q 000403         1462 KTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSH 1541 (1563)
Q Consensus      1462 k~l~lll~~L~~vVdK~sq~~~~vels~iD~ICDFLyHIYMFvG~g~~~~d~~K~~vE~~~~~~~iI~~LrP~LQ~~LrH 1541 (1563)
                      ++...+.--..+++||..|..+.++....++..|+.+|+-+++||||.||.++|+++.+|+++|+|-+-++|.+||.+.|
T Consensus      1414 ~~~q~~p~~qq~~~~hq~q~t~q~q~~Qqq~~~~~qqqlqhq~~n~~~vQt~s~p~p~~l~~~g~~~~~~~~y~qHmqqH 1493 (1517)
T KOG1883|consen 1414 PSHQQMPPPQQHSSSHQMQDTSQHQTIQQQSNHPTQQQLQHQIPNMSMVQTMSPPYPGFLHPSGPVGHVPMQYGQHMQQH 1493 (1517)
T ss_pred             chhhhCCCccCCchhhhhhhhhHHHHHHHHhcchHHHHHHHhccccceeeecCCCCCccccccccccccchhhHHHHHhc
Confidence            99888888888999999888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCchhhccCcccc
Q 000403         1542 LKPDVNSSIYAATHPKMV 1559 (1563)
Q Consensus      1542 L~~d~~ss~~aa~h~~~~ 1559 (1563)
                      .+..+++++||+.|..+.
T Consensus      1494 ~h~~~~~~~~a~~h~~n~ 1511 (1517)
T KOG1883|consen 1494 PHLPHHQQMPAPMHTMNP 1511 (1517)
T ss_pred             cCCCccccCCcchhccCc
Confidence            999999999999997653

>PF11573 Med23: Mediator complex subunit 23; InterPro: IPR021629 Med23 is one of the subunits of the Tail portion of the Mediator complex that regulates RNA polymerase II activity	Back alignment and domain information

>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1563
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-09

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 78.0 bits (191), Expect = 2e-14
 Identities = 96/636 (15%), Positives = 186/636 (29%), Gaps = 189/636 (29%)

Query: 754  DITK-IISA------LKVKRGDHRVLRLAENLC----------MNLILSQR-DFF--SLK 793
            D+ K I+S       +  K      LRL   L           +  +L     F    +K
Sbjct: 40   DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99

Query: 794  REGKG----STEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQI---------- 839
             E +     +  + E  +R+       +     ++     L L+  L ++          
Sbjct: 100  TEQRQPSMMTRMYIEQRDRLY--NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157

Query: 840  MATSQHTW-------SEKTLRYFPSLLRDAL----IGRIDKRGLTIQAWQQAETTVINQC 888
            +  S  TW       S K            +    +   +     ++  Q+    +    
Sbjct: 158  VLGSGKTWVALDVCLSYKVQCKMD----FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 889  TQLLSPSADPTY----VKTYLSHSFPQHRQY----LCAGAWILMQGHPENINSANLL--- 937
            T     S++       ++  L     + + Y    L     +L      N+ +A      
Sbjct: 214  TSRSDHSSNIKLRIHSIQAELRRLL-KSKPYENCLL-----VL-----LNVQNAKAWNAF 262

Query: 938  ----RVLREFSPEEVTSNIYTMVDVL---------LHHIHVELQRGHSLQDLLFKACANI 984
                ++L       +T+    + D L         L H  + L         L     + 
Sbjct: 263  NLSCKIL-------LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS--LLLKYLDC 313

Query: 985  SFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLY 1044
                L  E+L  +   L++I                                   ++W +
Sbjct: 314  RPQDLPREVLTTNPRRLSIIAESIRDGLATW------------------------DNWKH 349

Query: 1045 SGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPV---IPLIV-----YRLIENDAMD 1096
                K   + ++  N L   E Y   FD ++  + P    IP I+     + +I++D M 
Sbjct: 350  VNCDKLTTIIESSLNVLEPAE-YRKMFDRLS--VFPPSAHIPTILLSLIWFDVIKSDVMV 406

Query: 1097 SADRVLATYS--------SFLAYYPLRFSFVRDILAYFYGHLPGKLIV---RILNVF--- 1142
              ++ L  YS        S ++   +       +   +  H   + IV    I   F   
Sbjct: 407  VVNK-LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH---RSIVDHYNIPKTFDSD 462

Query: 1143 DLSKIPFSESFPQHIS--SSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASL 1200
            DL      + F  HI     N      +  F  +           L++       ++  +
Sbjct: 463  DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF----------LDFR-----FLEQKI 507

Query: 1201 RAPHNKSPMTSQSGPSNVSEGRKEFYQN----QDPGTYTQLVLETAVIEILS-LPVSASQ 1255
            R  H+ +   +     N    + +FY+      DP  Y +L     V  IL  LP     
Sbjct: 508  R--HDSTAWNASGSILNTL-QQLKFYKPYICDNDP-KYERL-----VNAILDFLPKIEEN 558

Query: 1256 IVSS----LVQIVVNIQPTLIQTSNGPYGASNSVGQ 1287
            ++ S    L++I       L+      +  ++   Q
Sbjct: 559  LICSKYTDLLRI------ALMAEDEAIFEEAHKQVQ 588

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00