Citrus Sinensis ID: 000514

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450
MDQNQSQRSSIGAATASSASSRAYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPNKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQQFTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIV
cccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHEEcccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHcccccHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccEEHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccHHHHHHHHHHccccccccccHHHHHcccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccccccccccc
ccccccccccccHHHcccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccEEEccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHEEEEccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcEcccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHEHccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHcccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEccccccccHHHHHccccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHHEEEcccccccccccccccEEcHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHEcccHHHHHHHHHHHHHHHHHHHHcccHHHccccEEEEEcccccccccccHHHHHHHHHHccccEEEEEEcHcHHHHccHHHHHHccHHHHHHHHHccccccEEEccccHHHHHEEEEEEcccccHHHHHHHHHHccccHHHHcccccccccccEEEccccccccHHHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccHcccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHcEEcccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccHHHHHHccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccEccHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHHccccccHccccccHHHHHHHHHHHcHccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHcHHHHccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccEcccccccHHHHHHHHHHHHccccccccccccEEEc
mdqnqsqrssigaatassassrayqfhPARAAIIDLFNLylgrssrqkqddsirdppnktQKRVLALnrelpprneqFLIDFEQlqsqfpdqdqlrSVTESVLISMVVQCCSHVPRAEFILFALRSLCSigyinwdtfLPSLLSSvssaemsagqgsqampavsatslqqsgmlptssgipnssnyqssnpasplpsvhgigspaqsaiETSVcaamspvkssdvsctgqqfttrvnsSVRDNAISSLRQLCCKIILTGLefslkpvthADIFYHMLNWLVTWDqkqqgidesdgksWRLDKALIEWLHSCLDVIWLlvdedrcrvpFYELLRTGLQfienipddEALFTLILEIHRRRDMMAMHMQMLDqhlhcptfgthrilsqttpnisveaagnlryspitypsvlgeplhgedlatsiqrgSLDWERAMRCIRHAiratpspdwwKRVLLVapcyrnpaqgptpgavftYDMISEAVIDRIVELLKLTnsevncwhdwlIFSDVFFFLVKSGCIDFVDFVDKLVSRlqdgdnhilRTNHVTWLLAQIIRVELVMGalnsdsrkVETTRKILSFHredrctdpnnpqSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLssagvtelfpgsnlppnerlmvmrevnplpmslltGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAqrnpsllakvgvtpLVLEIVNYRLlplyryqgkTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDffslkregkgsteftETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQctqllspsadptyvktylshsfpqhRQYLCAGAWIlmqghpeninSANLLRVLRefspeevtsNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYcmnrgppehwlySGLFKRVELQKALGNhlswkeryptfFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNvfdlskipfsesfpqhisssnpvmcpplDYFATLLLGLVNNvipalnynsksgstmdaslraphnkspmtsqsgpsnvsegrkefyqnqdpgtyTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIqptliqtsngpygasnsvgqgsvlptspsggstdslgasrstpsvsgintssfvsrsgytcqqLSCLLIQACGLLlaqlppdfhMQLYMEASRIIKESwwladgkrslgeldsavgyalldptwaaqdntstaiv
mdqnqsqrssigaatassassrAYQFHPARAAIIDLFNLYLGRSSrqkqddsirdppnktqKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQQFTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLqfienipddeALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHairatpspdwwKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMgalnsdsrkvETTRKILSfhredrctdpnnPQSILLDFISSCQNLRIWSLNTSTREYLnneqlqkgkqidewWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSllakvgvtplVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGkgsteftetlnrITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRaphnkspmtsqsgpsnvSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALldptwaaqdntstaiv
MDQNQSQRssigaatassassraYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPNKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFlpsllssvssAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQQFTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGdrmmdymnmddrSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHEllpldilllalidrdddpHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPvsasqivsslvqivvniqPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIV
***********************YQFHPARAAIIDLFNLYLG***********************************FLIDFEQ**********LRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLL****************************************************************************************FTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSD***VETTRKILSFHR***C******QSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNY*******************************************GTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQT*********************************************FVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWA**********
****************************ARAAIIDLFNLY************************************QFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSS************************************************************************************************DNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQ*****************ALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCY***********VFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNT***************QIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFP*********LMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQR****************ETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQA**QA**TV***C***L***ADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQR*HSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQ*IS******CPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRA***************VSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTD*************************TCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDN******
**********************AYQFHPARAAIIDLFNLYLGR***************KTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSS*********************SLQQSGMLPTSSGIP****************VHGIGSPAQSAIETSV***************GQQFTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRA*******************RKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLP********************SGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQ********
************************QFHPARAAIIDLFNLYLGRS***********P***TQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSSVSSAEM***************************************************************************************SVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQG*****GKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTS***************************SRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTST***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDQNQSQRSSIGAATASSASSRAYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPNKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQQFTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1450 2.2.26 [Sep-21-2011]
F4I4P3 1615 Mediator of RNA polymeras yes no 0.979 0.879 0.733 0.0
Q9W1X7 1439 Mediator of RNA polymeras yes no 0.388 0.391 0.212 2e-12
Q55BN0 1662 Putative mediator of RNA yes no 0.280 0.244 0.220 9e-11
Q16HH9 1409 Mediator of RNA polymeras N/A no 0.383 0.394 0.207 1e-08
Q5RIW8 1376 Mediator of RNA polymeras yes no 0.508 0.535 0.208 2e-08
Q5EB591367 Mediator of RNA polymeras yes no 0.497 0.528 0.202 5e-08
Q80YQ21367 Mediator of RNA polymeras yes no 0.498 0.528 0.202 2e-07
Q9ULK41368 Mediator of RNA polymeras yes no 0.431 0.457 0.202 3e-07
Q6P4231369 Mediator of RNA polymeras N/A no 0.407 0.431 0.209 4e-05
Q60UZ5 1589 Mediator of RNA polymeras N/A no 0.192 0.175 0.218 7e-05
>sp|F4I4P3|MED23_ARATH Mediator of RNA polymerase II transcription subunit 23 OS=Arabidopsis thaliana GN=MED23 PE=1 SV=1 Back     alignment and function desciption
 Score = 2209 bits (5724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1082/1476 (73%), Positives = 1238/1476 (83%), Gaps = 56/1476 (3%)

Query: 4    NQSQRSSIGAATASSASSRAYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPNKTQKR 63
            +QSQR+      A+ +SSR+YQFHPARAAIIDLFNLYLGR SRQK D+S+RDPPNK+QKR
Sbjct: 2    DQSQRT----VAATPSSSRSYQFHPARAAIIDLFNLYLGRGSRQKPDESLRDPPNKSQKR 57

Query: 64   VLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFA 123
            V A NR+LPPRNEQFL+DFE LQSQF D +QLR++TESVLIS+VVQC +H PRAEF+LFA
Sbjct: 58   VHAPNRDLPPRNEQFLLDFELLQSQFNDPEQLRTITESVLISLVVQCSNHAPRAEFLLFA 117

Query: 124  LRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGIPNS 183
            LR+LC I YINWDTFLPSLLSSVS+AE S  QG QA  A + +S   S           S
Sbjct: 118  LRTLCRISYINWDTFLPSLLSSVSAAEASLSQGVQAAAATAGSSATSS----------QS 167

Query: 184  SNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQ---QFTTRVNSSV 240
                S NP S LPS HGIGSP+ S ++       S      ++  GQ   +   R +  +
Sbjct: 168  VVPVSVNPTSLLPSAHGIGSPSASEVK-------SVENGQQIARAGQIVRENAMRNSQRI 220

Query: 241  RDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRL 300
            R  A++SLRQL CKIIL G+E SLKPVTHA+IF +M+NWLV WD++  G ++S GKSWR 
Sbjct: 221  RAAAVNSLRQLSCKIILIGVESSLKPVTHAEIFQYMMNWLVNWDRRDLGTEDSVGKSWRS 280

Query: 301  DKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRD 360
            +K L EWL SCLDVIWLLV+E   R+PFYELLR+GLQFIENIPDDEALFTLI+EIHRRRD
Sbjct: 281  EKTLAEWLRSCLDVIWLLVEEGESRIPFYELLRSGLQFIENIPDDEALFTLIMEIHRRRD 340

Query: 361  MMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLA 420
             MAMHM MLDQHLHCP+FGTHRI+SQ T N+  EA  +LR+SPITYPSVLGEPL+GEDLA
Sbjct: 341  AMAMHMLMLDQHLHCPSFGTHRIVSQITANVPPEAVPHLRHSPITYPSVLGEPLYGEDLA 400

Query: 421  TSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQ-GPTPGAVFTYDMIS 479
             SI +GSLDWERA+RCIRHAIR TPSPDWWKRVL+VAPCYR   Q GP PGAVFT DMI 
Sbjct: 401  MSIPKGSLDWERAVRCIRHAIRTTPSPDWWKRVLVVAPCYRPSTQAGPIPGAVFTSDMIC 460

Query: 480  EAVIDRIVELLKLTNS-------------------EVNCWHDWLIFSDVFFFLVKSGCID 520
            EA+IDRIVELLKLTNS                   + NCW +WL+FSD+FFFL+KSGC D
Sbjct: 461  EAIIDRIVELLKLTNSGNDCFGIDLVSVTFPPLYADANCWQEWLVFSDIFFFLIKSGCTD 520

Query: 521  FVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHR 580
            FVDF+DKLV RL   DNHILRTNHVTWLLAQIIRVELVM ALNSD++KVETTRKILSFHR
Sbjct: 521  FVDFIDKLVLRLNGVDNHILRTNHVTWLLAQIIRVELVMTALNSDAKKVETTRKILSFHR 580

Query: 581  EDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDR 640
            EDR +DPNNPQS+LLDF+SSCQNLRIWSL+T+TR YLNNEQL KGKQIDEWWR  SKG+R
Sbjct: 581  EDRNSDPNNPQSVLLDFVSSCQNLRIWSLSTTTRAYLNNEQLLKGKQIDEWWR--SKGER 638

Query: 641  MMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREV 700
            MMDYMNMDDRS+GMFWVVSYTMAQPACETV+NWLSSAG+ EL PG  L PN+R+M+ +EV
Sbjct: 639  MMDYMNMDDRSIGMFWVVSYTMAQPACETVINWLSSAGMAEL-PG--LQPNDRVMMTQEV 695

Query: 701  NPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSH 760
             PLPMSLL+GFS+NLCLKLALQME+++F  QVV SIAMVETYTRL+L++PHS+FRS FS 
Sbjct: 696  TPLPMSLLSGFSMNLCLKLALQMEEALFVSQVVPSIAMVETYTRLLLISPHSMFRSHFSQ 755

Query: 761  LAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVL 820
            LAQRN SLL+K GVT LVLEI+NYRLLPLYRYQGK+KTLMYD+TKIISALK KRGDHR+ 
Sbjct: 756  LAQRNASLLSKPGVTLLVLEILNYRLLPLYRYQGKSKTLMYDVTKIISALKGKRGDHRIF 815

Query: 821  RLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYL 880
            RLAENLCMNLILS RDFFS+KREGKG TEFTETLNRIT++ LAI IKTRGIAD DH++YL
Sbjct: 816  RLAENLCMNLILSLRDFFSVKREGKGPTEFTETLNRITIMTLAITIKTRGIADPDHMVYL 875

Query: 881  QTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLL 940
            QTMLEQI+ATSQHTWSEKT+R+FPSLLR+ L GR+DKRGL+IQAWQQAETTVINQCTQLL
Sbjct: 876  QTMLEQILATSQHTWSEKTMRHFPSLLRETLKGRVDKRGLSIQAWQQAETTVINQCTQLL 935

Query: 941  SPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNI 1000
            SPSA+P YV TYLSHSFPQHRQYLCAGA +LMQGH ENINS NL RVLRE SPEEVT+NI
Sbjct: 936  SPSAEPAYVSTYLSHSFPQHRQYLCAGACLLMQGHAENINSTNLARVLREVSPEEVTANI 995

Query: 1001 YTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHA 1060
            YT+VDVLLHH+HV+LQ+G SL+ +L KA AN++FF  THE+LPLDI LLALIDRDDDPHA
Sbjct: 996  YTLVDVLLHHVHVDLQQGQSLEAVLDKAGANLAFFFWTHEMLPLDIFLLALIDRDDDPHA 1055

Query: 1061 LRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFD 1120
            L I ++LL   +L  R+K YC NRG PEHWL + +FKR ELQKALGNHLSWK+RYPTFFD
Sbjct: 1056 LIIAMSLLKTPDLLLRIKNYCQNRGSPEHWLVTQVFKRNELQKALGNHLSWKDRYPTFFD 1115

Query: 1121 DIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPG 1180
            DIAARLLPVIPL++YRLIEN+AM+ AD +L  +S FLAY+PLRF+FVRDILAYFYGHLPG
Sbjct: 1116 DIAARLLPVIPLVLYRLIENNAMEQADNLLLAHSHFLAYHPLRFTFVRDILAYFYGHLPG 1175

Query: 1181 KLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKS 1240
            KL++R+L V DLSKIPFSESFPQ+IS +   +CPPLDYFA+LLL LVNNVIP L+ +S  
Sbjct: 1176 KLVLRMLKVLDLSKIPFSESFPQYISPTGAPVCPPLDYFASLLLNLVNNVIPPLSSSSNC 1235

Query: 1241 -------GSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIE 1293
                      +++S R PH K+P TSQ GP+N SEG+K FYQ QDPGTYTQLVLETAVIE
Sbjct: 1236 SSRSGSMADILNSSARPPHGKTPGTSQPGPANASEGQKAFYQIQDPGTYTQLVLETAVIE 1295

Query: 1294 ILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGA 1353
            ILSLPVSA+QIVSSLVQI+VNIQ TLIQ+ NG +GA+N VGQGSVLPTSPSGGSTDS+ A
Sbjct: 1296 ILSLPVSAAQIVSSLVQIIVNIQSTLIQSGNGFHGAANGVGQGSVLPTSPSGGSTDSMSA 1355

Query: 1354 SRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKES 1413
            SRST  + GINT+SFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFH+QLY+EA+R+ +E+
Sbjct: 1356 SRSTCLIPGINTASFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHVQLYLEAARVTRET 1415

Query: 1414 WWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAI 1449
            WWL DGKRS GELDSAVGYAL+DPTWAAQDNTSTAI
Sbjct: 1416 WWLKDGKRSQGELDSAVGYALMDPTWAAQDNTSTAI 1451
Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity).
Arabidopsis thaliana (taxid: 3702)
>sp|Q9W1X7|MED23_DROME Mediator of RNA polymerase II transcription subunit 23 OS=Drosophila melanogaster GN=MED23 PE=1 SV=1 Back     alignment and function description
>sp|Q55BN0|MED23_DICDI Putative mediator of RNA polymerase II transcription subunit 23 OS=Dictyostelium discoideum GN=med23 PE=3 SV=1 Back     alignment and function description
>sp|Q16HH9|MED23_AEDAE Mediator of RNA polymerase II transcription subunit 23 OS=Aedes aegypti GN=MED23 PE=3 SV=1 Back     alignment and function description
>sp|Q5RIW8|MED23_DANRE Mediator of RNA polymerase II transcription subunit 23 OS=Danio rerio GN=med23 PE=2 SV=2 Back     alignment and function description
>sp|Q5EB59|MED23_RAT Mediator of RNA polymerase II transcription subunit 23 OS=Rattus norvegicus GN=Med23 PE=2 SV=2 Back     alignment and function description
>sp|Q80YQ2|MED23_MOUSE Mediator of RNA polymerase II transcription subunit 23 OS=Mus musculus GN=Med23 PE=1 SV=2 Back     alignment and function description
>sp|Q9ULK4|MED23_HUMAN Mediator of RNA polymerase II transcription subunit 23 OS=Homo sapiens GN=MED23 PE=1 SV=2 Back     alignment and function description
>sp|Q6P423|MED23_XENLA Mediator of RNA polymerase II transcription subunit 23 OS=Xenopus laevis GN=med23 PE=2 SV=1 Back     alignment and function description
>sp|Q60UZ5|MED23_CAEBR Mediator of RNA polymerase II transcription subunit 23 OS=Caenorhabditis briggsae GN=sur-2 PE=3 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1450
255586806 1613 conserved hypothetical protein [Ricinus 0.994 0.893 0.840 0.0
356530772 1615 PREDICTED: uncharacterized protein LOC10 0.996 0.894 0.805 0.0
359472598 1663 PREDICTED: uncharacterized protein LOC10 0.955 0.832 0.818 0.0
297845394 1637 hypothetical protein ARALYDRAFT_472581 [ 0.988 0.875 0.735 0.0
334182788 1592 uncharacterized protein [Arabidopsis tha 0.976 0.889 0.740 0.0
15220680 1615 uncharacterized protein [Arabidopsis tha 0.979 0.879 0.733 0.0
9295691 1583 F26F24.8 [Arabidopsis thaliana] 0.963 0.882 0.720 0.0
2977376481550 unnamed protein product [Vitis vinifera] 0.918 0.859 0.737 0.0
115448499 1620 Os02g0732700 [Oryza sativa Japonica Grou 0.989 0.885 0.669 0.0
242062622 1613 hypothetical protein SORBIDRAFT_04g02884 0.988 0.889 0.669 0.0
>gi|255586806|ref|XP_002534017.1| conserved hypothetical protein [Ricinus communis] gi|223525976|gb|EEF28365.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 2457 bits (6369), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1226/1458 (84%), Positives = 1328/1458 (91%), Gaps = 16/1458 (1%)

Query: 1    MDQNQSQRSSIGAATASSASSRAYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPNKT 60
            MDQNQ    SI A TA+S   R YQF PARAAIIDLFNLYLGRSSRQK DDS R+PPNKT
Sbjct: 1    MDQNQR---SIAATTAAS---RGYQFQPARAAIIDLFNLYLGRSSRQKHDDSTREPPNKT 54

Query: 61   QKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFI 120
            QKRVLALNRELPPRNEQFLI+FEQLQSQFPDQDQLRSVTESVLIS+V+QCC+H PRAEF+
Sbjct: 55   QKRVLALNRELPPRNEQFLINFEQLQSQFPDQDQLRSVTESVLISLVIQCCNHAPRAEFL 114

Query: 121  LFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGI 180
            LFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQ  Q + A+S+ +  Q+ +LP+SS I
Sbjct: 115  LFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQAGQTVSAISSMNSSQNVILPSSSAI 174

Query: 181  PNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQQFTTRVNSSV 240
            PNSSN+Q SNP SPL SVHGIGSP QSAIE S+ A +SPVKSSD+S  GQ  T+RVN S 
Sbjct: 175  PNSSNFQPSNPTSPLASVHGIGSPVQSAIEPSLLATVSPVKSSDISGNGQPSTSRVNLSS 234

Query: 241  RDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDG-KSWR 299
            RDNAI+SLRQLCCKIILTGLEF+LKP TH++IF+HMLNWLV WDQ+Q G+DESD  +SWR
Sbjct: 235  RDNAINSLRQLCCKIILTGLEFNLKPATHSEIFHHMLNWLVNWDQRQHGVDESDSVRSWR 294

Query: 300  LDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRR 359
             +KALIEWL SCLDVIWLLVDE++CRVPFYELLR+GLQFIENIPDDEALFTLILEIHRRR
Sbjct: 295  PEKALIEWLRSCLDVIWLLVDENKCRVPFYELLRSGLQFIENIPDDEALFTLILEIHRRR 354

Query: 360  DMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDL 419
            DMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAA NLRYSPITYPSVLGEPLHGEDL
Sbjct: 355  DMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAANLRYSPITYPSVLGEPLHGEDL 414

Query: 420  ATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMIS 479
            A SIQRGSLDWERA+RCIRHA+R TPSPDWWKRVLLVAP YRNPA GPTPGAVF   MI 
Sbjct: 415  ANSIQRGSLDWERALRCIRHALRTTPSPDWWKRVLLVAPSYRNPAHGPTPGAVFVSSMIC 474

Query: 480  EAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHI 539
            EA IDRIVELLKLTNSEVNCW +WL+FSD+ FFL+KSGCIDFVDFVDKLV+RL +GD HI
Sbjct: 475  EATIDRIVELLKLTNSEVNCWQEWLVFSDILFFLMKSGCIDFVDFVDKLVARLTEGDQHI 534

Query: 540  LRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFIS 599
            LRTNH+TWLLAQIIRVE+V+ AL +D+RKVETTRKI+SFHREDR +DPNNPQSILLDFIS
Sbjct: 535  LRTNHMTWLLAQIIRVEIVVNALTTDARKVETTRKIMSFHREDRSSDPNNPQSILLDFIS 594

Query: 600  SCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVS 659
            SCQNLRIWSLNTSTREYLN+EQLQKGKQIDEWWR V+KGDRM+DYMNMDDRS+GMFWVVS
Sbjct: 595  SCQNLRIWSLNTSTREYLNSEQLQKGKQIDEWWRTVTKGDRMIDYMNMDDRSIGMFWVVS 654

Query: 660  YTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKL 719
            YTM+QPACETV+NWLSSAGV+EL  G+++  NERLMVMREVNPLP+SLL+G SLNLCLKL
Sbjct: 655  YTMSQPACETVVNWLSSAGVSEL-AGTSMQSNERLMVMREVNPLPISLLSGLSLNLCLKL 713

Query: 720  ALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVL 779
              Q+EDS+F GQV+ SIAMVETY RL+L+APHSLFRS FSHLAQR PSLL+K GVT LV 
Sbjct: 714  VFQLEDSLFAGQVIPSIAMVETYCRLLLIAPHSLFRSHFSHLAQRYPSLLSKPGVTLLVF 773

Query: 780  EIVNYRLLPLYR-----YQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQ 834
            EIVNYRLLPLYR     YQGK+K+LMYD+TKI+S LK KRGDHRV RLAENLCMNLILS 
Sbjct: 774  EIVNYRLLPLYRQEHVEYQGKSKSLMYDVTKIVSTLKGKRGDHRVFRLAENLCMNLILSL 833

Query: 835  RDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHT 894
            RDFFS+KREGKG TEFTETLNR+TVI LAIIIKTRGIADADH+LYLQTMLEQIMATSQHT
Sbjct: 834  RDFFSVKREGKGPTEFTETLNRVTVITLAIIIKTRGIADADHLLYLQTMLEQIMATSQHT 893

Query: 895  WSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLS 954
            WSEKTLRYFPSLL DAL GRIDKRGL IQ WQQ ETTVINQCTQLLSPSA+P YV TY++
Sbjct: 894  WSEKTLRYFPSLLHDALSGRIDKRGLAIQEWQQTETTVINQCTQLLSPSAEPAYVMTYIN 953

Query: 955  HSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVE 1014
            HSFPQHRQYLCAGAWILMQGHPENINS NL RVLREFSPEEVTSNIYTMVDVLLH I +E
Sbjct: 954  HSFPQHRQYLCAGAWILMQGHPENINSVNLARVLREFSPEEVTSNIYTMVDVLLHRIQME 1013

Query: 1015 LQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQ 1074
            LQ GHSLQDLL K CAN++FFV  HELLPLDILLLAL DRDDDPHALRIVI+LLDRQELQ
Sbjct: 1014 LQHGHSLQDLLLKTCANLAFFVWGHELLPLDILLLALTDRDDDPHALRIVISLLDRQELQ 1073

Query: 1075 QRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIV 1134
            QRVKL+CMNRGPPEHWL+SG+FKR+ELQKALGNHLSWK+RYPTFFDDIAARLLPVIPLIV
Sbjct: 1074 QRVKLFCMNRGPPEHWLFSGVFKRLELQKALGNHLSWKDRYPTFFDDIAARLLPVIPLIV 1133

Query: 1135 YRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSK 1194
            YRL+ENDA+D ADRVLA YS FLAY+PLRF+FVRDILAYFYGHLPGKLIVRILNV DLSK
Sbjct: 1134 YRLVENDAIDPADRVLAMYSPFLAYHPLRFTFVRDILAYFYGHLPGKLIVRILNVLDLSK 1193

Query: 1195 IPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDA---SLRAP 1251
            IPFSESFPQHISSSNPVMCPP +YFATLLLGLVNNV+P LN NSK GS  D    SLR P
Sbjct: 1194 IPFSESFPQHISSSNPVMCPPPEYFATLLLGLVNNVLPPLNTNSKYGSLGDGLCNSLRNP 1253

Query: 1252 HNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQI 1311
            + K+P TSQSGP+N+S+ +K FYQ QDPGTYTQLVLETAVIE+LSLPV+ASQIVSSLVQI
Sbjct: 1254 NTKTPATSQSGPTNISDAQKAFYQIQDPGTYTQLVLETAVIELLSLPVTASQIVSSLVQI 1313

Query: 1312 VVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSR 1371
            VVNIQPTLIQ+SNG +GASN  GQGSVLPTSPSGGSTDSLGASRS PSVSGINT++FVSR
Sbjct: 1314 VVNIQPTLIQSSNGLHGASNGAGQGSVLPTSPSGGSTDSLGASRSNPSVSGINTATFVSR 1373

Query: 1372 SGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVG 1431
            SGYTCQQLSCLLIQACGLLLAQLPPDFH+QLYMEASRIIKESWWL D KRSLGELDSAVG
Sbjct: 1374 SGYTCQQLSCLLIQACGLLLAQLPPDFHLQLYMEASRIIKESWWLTDAKRSLGELDSAVG 1433

Query: 1432 YALLDPTWAAQDNTSTAI 1449
            YALLDPTWAAQDNTSTAI
Sbjct: 1434 YALLDPTWAAQDNTSTAI 1451

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356530772|ref|XP_003533954.1| PREDICTED: uncharacterized protein LOC100798789 [Glycine max] Back     alignment and taxonomy information
>gi|359472598|ref|XP_002281148.2| PREDICTED: uncharacterized protein LOC100262719 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297845394|ref|XP_002890578.1| hypothetical protein ARALYDRAFT_472581 [Arabidopsis lyrata subsp. lyrata] gi|297336420|gb|EFH66837.1| hypothetical protein ARALYDRAFT_472581 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|334182788|ref|NP_001185071.1| uncharacterized protein [Arabidopsis thaliana] gi|332192239|gb|AEE30360.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15220680|ref|NP_173737.1| uncharacterized protein [Arabidopsis thaliana] gi|395406782|sp|F4I4P3.1|MED23_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit 23 gi|332192238|gb|AEE30359.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|9295691|gb|AAF86997.1|AC005292_6 F26F24.8 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297737648|emb|CBI26849.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|115448499|ref|NP_001048029.1| Os02g0732700 [Oryza sativa Japonica Group] gi|46390660|dbj|BAD16142.1| unknown protein [Oryza sativa Japonica Group] gi|113537560|dbj|BAF09943.1| Os02g0732700 [Oryza sativa Japonica Group] gi|222623623|gb|EEE57755.1| hypothetical protein OsJ_08276 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|242062622|ref|XP_002452600.1| hypothetical protein SORBIDRAFT_04g028840 [Sorghum bicolor] gi|241932431|gb|EES05576.1| hypothetical protein SORBIDRAFT_04g028840 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1450
TAIR|locus:2028040 1615 AT1G23230 "AT1G23230" [Arabido 0.981 0.881 0.699 0.0
DICTYBASE|DDB_G0270434 1662 med23 "putative mediator compl 0.284 0.247 0.233 3.7e-13
FB|FBgn0034795 1439 MED23 "Mediator complex subuni 0.348 0.351 0.211 4.8e-10
ZFIN|ZDB-GENE-040724-821387 med23 "mediator complex subuni 0.444 0.465 0.199 0.00012
UNIPROTKB|Q9ULK41368 MED23 "Mediator of RNA polymer 0.450 0.477 0.199 0.00031
UNIPROTKB|F1N8H31392 MED23 "Uncharacterized protein 0.443 0.461 0.201 0.00033
TAIR|locus:2028040 AT1G23230 "AT1G23230" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 5250 (1853.2 bits), Expect = 0., P = 0.
 Identities = 1031/1473 (69%), Positives = 1179/1473 (80%)

Query:     4 NQSQRXXXXXXXXXXXXXXXYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPNKTQKR 63
             +QSQR               YQFHPARAAIIDLFNLYLGR SRQK D+S+RDPPNK+QKR
Sbjct:     2 DQSQRTVAATPSSSRS----YQFHPARAAIIDLFNLYLGRGSRQKPDESLRDPPNKSQKR 57

Query:    64 VLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFA 123
             V A NR+LPPRNEQFL+DFE LQSQF D +QLR++TESVLIS+VVQC +H PRAEF+LFA
Sbjct:    58 VHAPNRDLPPRNEQFLLDFELLQSQFNDPEQLRTITESVLISLVVQCSNHAPRAEFLLFA 117

Query:   124 LRSLCSIGYINWDTFXXXXXXXXXXAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGIPNS 183
             LR+LC I YINWDTF          AE S  QG QA  A + +S   S      S +P  
Sbjct:   118 LRTLCRISYINWDTFLPSLLSSVSAAEASLSQGVQAAAATAGSSATSS-----QSVVP-- 170

Query:   184 SNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQQFTTRVNSSVRDN 243
                 S NP S LPS HGIGSP+ S ++ SV       ++  +    ++   R +  +R  
Sbjct:   171 ---VSVNPTSLLPSAHGIGSPSASEVK-SVENGQQIARAGQIV---RENAMRNSQRIRAA 223

Query:   244 AISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRLDKA 303
             A++SLRQL CKIIL G+E SLKPVTHA+IF +M+NWLV WD++  G ++S GKSWR +K 
Sbjct:   224 AVNSLRQLSCKIILIGVESSLKPVTHAEIFQYMMNWLVNWDRRDLGTEDSVGKSWRSEKT 283

Query:   304 LIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMA 363
             L EWL SCLDVIWLLV+E   R+PFYELLR+GLQFIENIPDDEALFTLI+EIHRRRD MA
Sbjct:   284 LAEWLRSCLDVIWLLVEEGESRIPFYELLRSGLQFIENIPDDEALFTLIMEIHRRRDAMA 343

Query:   364 MHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSI 423
             MHM MLDQHLHCP+FGTHRI+SQ T N+  EA  +LR+SPITYPSVLGEPL+GEDLA SI
Sbjct:   344 MHMLMLDQHLHCPSFGTHRIVSQITANVPPEAVPHLRHSPITYPSVLGEPLYGEDLAMSI 403

Query:   424 QRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQ-GPTPGAVFTYDMISEAV 482
              +GSLDWERA+RCIRHAIR TPSPDWWKRVL+VAPCYR   Q GP PGAVFT DMI EA+
Sbjct:   404 PKGSLDWERAVRCIRHAIRTTPSPDWWKRVLVVAPCYRPSTQAGPIPGAVFTSDMICEAI 463

Query:   483 IDRIVELLKLTNS-------------------EVNCWHDWLIFSDVFFFLVKSGCIDFVD 523
             IDRIVELLKLTNS                   + NCW +WL+FSD+FFFL+KSGC DFVD
Sbjct:   464 IDRIVELLKLTNSGNDCFGIDLVSVTFPPLYADANCWQEWLVFSDIFFFLIKSGCTDFVD 523

Query:   524 FVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDR 583
             F+DKLV RL   DNHILRTNHVTWLLAQIIRVELVM ALNSD++KVETTRKILSFHREDR
Sbjct:   524 FIDKLVLRLNGVDNHILRTNHVTWLLAQIIRVELVMTALNSDAKKVETTRKILSFHREDR 583

Query:   584 CTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGXXXXX 643
              +DPNNPQS+LLDF+SSCQNLRIWSL+T+TR YLNNEQL KGKQIDEWWR  SKG     
Sbjct:   584 NSDPNNPQSVLLDFVSSCQNLRIWSLSTTTRAYLNNEQLLKGKQIDEWWR--SKGERMMD 641

Query:   644 XXXXXXXSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPL 703
                    S+GMFWVVSYTMAQPACETV+NWLSSAG+ EL PG  L PN+R+M+ +EV PL
Sbjct:   642 YMNMDDRSIGMFWVVSYTMAQPACETVINWLSSAGMAEL-PG--LQPNDRVMMTQEVTPL 698

Query:   704 PMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQ 763
             PMSLL+GFS+NLCLKLALQME+++F  QVV SIAMVETYTRL+L++PHS+FRS FS LAQ
Sbjct:   699 PMSLLSGFSMNLCLKLALQMEEALFVSQVVPSIAMVETYTRLLLISPHSMFRSHFSQLAQ 758

Query:   764 RNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLA 823
             RN SLL+K GVT LVLEI+NYRLLPLYRYQGK+KTLMYD+TKIISALK KRGDHR+ RLA
Sbjct:   759 RNASLLSKPGVTLLVLEILNYRLLPLYRYQGKSKTLMYDVTKIISALKGKRGDHRIFRLA 818

Query:   824 ENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTM 883
             ENLCMNLILS RDFFS+KREGKG TEFTETLNRIT++ LAI IKTRGIAD DH++YLQTM
Sbjct:   819 ENLCMNLILSLRDFFSVKREGKGPTEFTETLNRITIMTLAITIKTRGIADPDHMVYLQTM 878

Query:   884 LEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPS 943
             LEQI+ATSQHTWSEKT+R+FPSLLR+ L GR+DKRGL+IQAWQQAETTVINQCTQLLSPS
Sbjct:   879 LEQILATSQHTWSEKTMRHFPSLLRETLKGRVDKRGLSIQAWQQAETTVINQCTQLLSPS 938

Query:   944 ADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTM 1003
             A+P YV TYLSHSFPQHRQYLCAGA +LMQGH ENINS NL RVLRE SPEEVT+NIYT+
Sbjct:   939 AEPAYVSTYLSHSFPQHRQYLCAGACLLMQGHAENINSTNLARVLREVSPEEVTANIYTL 998

Query:  1004 VDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHEXXXXXXXXXXXXXXXXXXHALRI 1063
             VDVLLHH+HV+LQ+G SL+ +L KA AN++FF  THE                  HAL I
Sbjct:   999 VDVLLHHVHVDLQQGQSLEAVLDKAGANLAFFFWTHEMLPLDIFLLALIDRDDDPHALII 1058

Query:  1064 VITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIA 1123
              ++LL   +L  R+K YC NRG PEHWL + +FKR ELQKALGNHLSWK+RYPTFFDDIA
Sbjct:  1059 AMSLLKTPDLLLRIKNYCQNRGSPEHWLVTQVFKRNELQKALGNHLSWKDRYPTFFDDIA 1118

Query:  1124 ARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLI 1183
             ARLLPVIPL++YRLIEN+AM+ AD +L  +S FLAY+PLRF+FVRDILAYFYGHLPGKL+
Sbjct:  1119 ARLLPVIPLVLYRLIENNAMEQADNLLLAHSHFLAYHPLRFTFVRDILAYFYGHLPGKLV 1178

Query:  1184 VRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPAL----NYNSK 1239
             +R+L V DLSKIPFSESFPQ+IS +   +CPPLDYFA+LLL LVNNVIP L    N +S+
Sbjct:  1179 LRMLKVLDLSKIPFSESFPQYISPTGAPVCPPLDYFASLLLNLVNNVIPPLSSSSNCSSR 1238

Query:  1240 SGSTMD---ASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILS 1296
             SGS  D   +S R PH K+P TSQ GP+N SEG+K FYQ QDPGTYTQLVLETAVIEILS
Sbjct:  1239 SGSMADILNSSARPPHGKTPGTSQPGPANASEGQKAFYQIQDPGTYTQLVLETAVIEILS 1298

Query:  1297 LPXXXXXXXXXXXXXXXXXXPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRS 1356
             LP                   TLIQ+ NG +GA+N VGQGSVLPTSPSGGSTDS+ ASRS
Sbjct:  1299 LPVSAAQIVSSLVQIIVNIQSTLIQSGNGFHGAANGVGQGSVLPTSPSGGSTDSMSASRS 1358

Query:  1357 TPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWL 1416
             T  + GINT+SFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFH+QLY+EA+R+ +E+WWL
Sbjct:  1359 TCLIPGINTASFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHVQLYLEAARVTRETWWL 1418

Query:  1417 ADGKRSLGELDSAVGYALLDPTWAAQDNTSTAI 1449
              DGKRS GELDSAVGYAL+DPTWAAQDNTSTAI
Sbjct:  1419 KDGKRSQGELDSAVGYALMDPTWAAQDNTSTAI 1451
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0006487 "protein N-linked glycosylation" evidence=RCA
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
DICTYBASE|DDB_G0270434 med23 "putative mediator complex subunit 23" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0034795 MED23 "Mediator complex subunit 23" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040724-82 med23 "mediator complex subunit 23" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9ULK4 MED23 "Mediator of RNA polymerase II transcription subunit 23" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1N8H3 MED23 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
F4I4P3MED23_ARATHNo assigned EC number0.73300.97930.8792yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00030571001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (1601 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1450
pfam115731341 pfam11573, Med23, Mediator complex subunit 23 3e-24
>gnl|CDD|221138 pfam11573, Med23, Mediator complex subunit 23 Back     alignment and domain information 
 Score =  110 bits (277), Expect = 3e-24
 Identities = 138/744 (18%), Positives = 247/744 (33%), Gaps = 127/744 (17%)

Query: 645  MNMDDRSVGMFWVVS--YTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNP 702
            +N D  +     ++   Y+         M  L           S    +     +    P
Sbjct: 478  LNFDMGNDYRLALLCNAYSTNTEYFSRPMPALIETLNGNSKNSSPFGLSYSRQAVNPFVP 537

Query: 703  LPMSLLTGFS-----------LNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLA-- 749
              + +L   +           L   +K A          +     A+VETY+RL++    
Sbjct: 538  FSVEVLDSLTVHSKMSLIHSILTHLIKQAQSKLPVPAVFETAP--ALVETYSRLLVYTEI 595

Query: 750  PHSLFRSLFSHLAQRNPSLLA----KVGVTPLVLEIVNYRL---LPLYRYQGKTKTLMYD 802
                 R L   L               G    +LE+++YRL      YR Q     L + 
Sbjct: 596  ESLGIRGLLGQLLPLRSLNEVFKSQAWGQLHTLLEMLSYRLHHVHSHYRVQ----LLSHL 651

Query: 803  ITKIISALKVKRGDHRVLRLAENLCMNLILS----------QRDFFSLKREGKGSTEFTE 852
             +    A      + ++    E+  + LI             R     K+     +  +E
Sbjct: 652  HS---LASVNTTNNMQLHSCVESTALRLIQGLGSSEVQNQFSRYLRHCKQPKTIVSPESE 708

Query: 853  TLNRITVIALAIIIKTRGIADADHVLYLQT----MLEQIMATSQHTWSEKTLRYFPSLLR 908
             LN+  ++ LA  +K   I    +    QT     L  IM  + H W E TL  FP  L 
Sbjct: 709  ELNKALILTLARAMK---ITGTGNDPQSQTWCKDFLANIMQNTPHGWPEHTLSCFPPWLN 765

Query: 909  DALIGRIDKRGLTIQAWQQAET-TVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAG 967
            +       K+    +   QA   +V  +  +  S + +   +  +     P    +LC  
Sbjct: 766  EYF-----KQHNVPKEPNQALKKSVEEEYRRWNSMTNENDIIIRFGDPGTPP--LFLCLL 818

Query: 968  AWILMQGHPENIN-SANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLF 1026
              +LM    E  N S    ++L    P+ +  ++    D ++  +             + 
Sbjct: 819  FKMLMWNQHETDNISPVFYKILERIGPKALVVHLRKFCDYIVAEVSNSQDGNQ-----VN 873

Query: 1027 KACANISFFVLTHELLPLDILLLALIDRD-DDPHALR----IVITLLDRQELQQRVKLYC 1081
            K    I+  +    ++ +D L+L LI R  +   A        + LL   E + RV+ + 
Sbjct: 874  KCIDTINDMIWKFNIITIDRLVLCLILRPHEGNDAQICFQIAQLLLLKTNEFRNRVQEFV 933

Query: 1082 MNRGPPEHWLYSGLFKRV--------------ELQKALGNHLSWKERY-PTFFDDIAARL 1126
             N  PPEHW  S   K                E              + P +F ++  R 
Sbjct: 934  KNN-PPEHWKQSNYHKAHLKYHQKFPEKFAFEESASHPSQPDEPSNVHLPVYFGNVCLRF 992

Query: 1127 LPVIPLIVYRLIENDAMD---SADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPG--- 1180
            LPV+ + ++R +E        + D +L   S    ++    +F+ + L Y+   L G   
Sbjct: 993  LPVLDIYIHRYLEQQGYKLSKTLDTILDHLSMLYKFHDRPITFLYNTLHYYERLLRGRDK 1052

Query: 1181 -KLIVRILNVFDLSKIPFS------ESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPA 1233
              L+  I+      +            +    SS      P L Y+  L+  +V      
Sbjct: 1053 KSLVSAIIGSLKDVRPANWALTEAYLKYNMQKSSDEVNW-PELSYYMELIGRMV------ 1105

Query: 1234 LNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIE 1293
                     T+D     P           P   ++ R  F +  +P  +    L    IE
Sbjct: 1106 --------DTIDGINPPP-----------PFVATDWR--FNEFPNPPAHA---LYVTCIE 1141

Query: 1294 ILSLPVSASQIVSSLVQIVVNIQP 1317
            +++LPVS  ++ ++L+ ++V   P
Sbjct: 1142 LMALPVSPEKVANALIDVIVKGYP 1165

Med23 is one of the subunits of the Tail portion of the Mediator complex that regulates RNA polymerase II activity. Med23 is required for heat-shock-specific gene expression, and has been shown to mediate transcriptional activation of E1A in mice. Length = 1341

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1450
KOG1883 1517 consensus Cofactor required for Sp1 transcriptiona 100.0
PF115731341 Med23: Mediator complex subunit 23; InterPro: IPR0 100.0
KOG1883 1517 consensus Cofactor required for Sp1 transcriptiona 99.84
>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=4.8e-271  Score=2354.14  Aligned_cols=1236  Identities=24%  Similarity=0.269  Sum_probs=1138.8

Q ss_pred             CCccccccccccccccccccccccccchhhHhHHHHHHhhhcCCCCcCCCCCcCCCCchhhhHHhhccCCCCCCcchhhh
Q 000514            1 MDQNQSQRSSIGAATASSASSRAYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPNKTQKRVLALNRELPPRNEQFLI   80 (1450)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~krv~a~~~~~~p~~eqf~~   80 (1450)
                      |||++  | .++++.+   +||.++|||+|++++|+|+||+|+.+|+|++.++|+++|||||||++-|+++||+||||++
T Consensus         1 ~~~s~--~-~~met~~---~s~~~e~~~v~~i~~~~~sl~~~~~~rek~r~~~s~~~d~t~~r~~~~n~~~qe~~eQ~ll   74 (1517)
T KOG1883|consen    1 KPGSA--E-DTMETQD---TSSPQEVQKVNRIKEAFKSLVEENPTREKFRPLTSNIGDETALRIQFGNMMMQEKEEQSLL   74 (1517)
T ss_pred             CCcch--h-hhhhccc---cccHHHHhhHHHHHHHHHHHhhcCCcccccchhhcCCCchhhHHHhcCCCCCCchhHHHHH
Confidence            45555  7 6777777   8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhccCCChhHHhHHHHHHHhhhhhhcCCCCcchhHHHHHHHHhhhcccccccccHHHHhhhhhhhccccccccccc
Q 000514           81 DFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQGSQAM  160 (1450)
Q Consensus        81 df~~l~~qf~~~~ql~~~te~~~~~~~~qc~~h~p~~~fll~~~~~l~~~~~~~wd~~l~~ll~~~~~~e~~~~q~~~~~  160 (1450)
                      ||+-++.+|.+.+|+|.++|++|+++|.||++||||++|++|   .||++|||+  ++|+++.|+++.+|.+..|++++.
T Consensus        75 ~~~l~~~h~~~~~~~r~~~~~~l~~lVdq~l~~a~~~~~i~~---~LC~~~li~--t~l~~l~s~i~ae~~kli~~vi~~  149 (1517)
T KOG1883|consen   75 KELLKMVHGVAEKPDRVFLGTNLERLVDQLLRYARQKGAIST---NLCAEGLIM--TSLFRLCSRIWAEKFKLINDVIPK  149 (1517)
T ss_pred             HHHHHHHhccCCccceehHHHHHHHHHHHhccccchhhhHHH---HHHHHHHhh--cchHHHHHHHHHHHHHHHhhhhhh
Confidence            999999999999999999999999999999999999999999   899999999  999999999999999999999985


Q ss_pred             ccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCccccccccccccccccccCCCCCCCC---ccccccc
Q 000514          161 PAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQ---QFTTRVN  237 (1450)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~  237 (1450)
                      ....+    ...++|.                 -|.|+||+ +|..+..|+--          .|-.+|+   ....|++
T Consensus       150 vdykG----vr~ilkv-----------------ilesa~~~-~P~svsv~~V~----------Qi~~a~~vir~i~dRns  197 (1517)
T KOG1883|consen  150 VDYKG----VRNILKV-----------------ILESALRR-LPYSVSVEQVN----------QILAAENVIRHIVDRNS  197 (1517)
T ss_pred             hchhh----HHHHHHH-----------------HHHHHhcc-CCCccCHHHHH----------HHHHHHHHHHHHHhccc
Confidence            44433    2233433                 46788888 77765544321          3444555   5567888


Q ss_pred             ccccchhhhhhhhhhHHHhhhhcccccccccHHHHHHHHHHHHHhccccccCCCccCCccccchhHHHHHHHHHHHHHHH
Q 000514          238 SSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWL  317 (1450)
Q Consensus       238 ~~~~~~~~~~l~~l~c~i~l~~le~~lkp~t~~~i~~~~~~w~~~wd~~~~g~~~~~~~~~~~~~~~~~w~~~cl~viw~  317 (1450)
                      ...+.       ++.|++|+.|.+.  ||++|++++++|.+|+|+| ++..|++..=|++|++++.+++| .+|||++|.
T Consensus       198 ~llpa-------~~~~~eImrg~p~--~~l~h~~l~~~m~d~vv~f-R~~a~~~~i~Gr~~~~pi~l~~~-~~~l~~~W~  266 (1517)
T KOG1883|consen  198 CLLPA-------YFTLSEIMRGMPK--QALMHWRLTELMADFVVHF-RPTADLSSICGRGSVLPIVLHPG-FYPLTNSWE  266 (1517)
T ss_pred             cccch-------HHhHHHHHhcCCc--ccccHHHHHHHHHHHHHHh-cccccchhhcccccccccccccC-cccchhhhe
Confidence            88776       8999999999998  9999999999999999999 88889988889999999999999 999999999


Q ss_pred             HhcCCCcccchHHHhhccccccccCCChhHHHHHHHHHhhchhhHHHHHhhhccccCCCCccccccccccCCcccccccc
Q 000514          318 LVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAG  397 (1450)
Q Consensus       318 lv~e~~~rvpfy~ll~~~~q~~e~~pddeal~~l~~e~hrrrd~~~~hm~~ldqhlhcptf~t~~~~~~~~~~~~~~~~~  397 (1450)
                      |+-++ -|.|||+++|++.+++|++|||+|||++|||+|+|||.|||||+|.|||+|||||++|||.++.+.++-.||+.
T Consensus       267 l~~~~-~r~pf~~~~~slpy~~E~~~~~~all~~Ileqp~~RDv~~Ml~L~~~qk~rcp~~~e~lI~~~I~a~e~~EAe~  345 (1517)
T KOG1883|consen  267 LDGLT-LRFPFKGPHHSLPYRPELTETQLALLRYILEQPYSRDVMAMLSLHKPQKQRCPTLEEQLISLMICAMEMAEAES  345 (1517)
T ss_pred             ecccc-ccccccccccccCCChhhccchHHHHHHHHhhhcchhHHHHhhcCchhhhcCCcHHHHhHHHhhhccccccccc
Confidence            98888 99999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCCcccCCCcchhhhhhhccCCCccHHHHHHHHHHHhhcCCChhhhhhhheeccccCCCCC-CCCCcceeccc
Q 000514          398 NLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQ-GPTPGAVFTYD  476 (1450)
Q Consensus       398 ~lr~s~~ty~~~~ge~l~ge~~a~~~~~~~~~~e~a~rc~~~~~r~~~s~d~w~~vl~~ap~~~~~~~-~~~~~~~f~~~  476 (1450)
                      ++|.|||+       +|.||+++++|.+|+|   ++++|+||++|++|      ++|+++||||...| ++.+|+||+++
T Consensus       346 ~~~~spi~-------~l~w~~Ls~~liygvl---~~~~~~~h~v~~l~------~~L~~~~~~r~rdq~mwI~~qviss~  409 (1517)
T KOG1883|consen  346 LPETSPIP-------RLQWDHLSSQLIYGVL---FQFLSFKHFVLVLH------NKLKRCKLTRGRDQLMWILLQVISSS  409 (1517)
T ss_pred             cccCCCCC-------hhHHHHHHHHHHHHHH---HHHHhHHHHHHHHH------HHHhhcCcccccchhheeeHHHhhhh
Confidence            99999999       9999999999999999   99999999999998      99999999999999 99999999999


Q ss_pred             hhhHHHHHHHHHHccccc--------------ccccchhhhHhhhhHHHHHHhcccccHHHHHHHHHhhhccCCcccccc
Q 000514          477 MISEAVIDRIVELLKLTN--------------SEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRT  542 (1450)
Q Consensus       477 mi~ea~i~r~~~ll~~~~--------------~~~~~w~ewl~fsd~f~fl~~~g~~d~~~fi~~l~~r~~~gd~~~~~~  542 (1450)
                      |+|+|.+||++|++|++|              +.-+||++||.|+|+|++|+|+||.||.||+++|        +|++|+
T Consensus       410 i~~~al~D~~lev~kL~n~lf~~dlv~~~~pdin~~~~~r~la~~~iwi~L~Kka~~Df~d~~~pl--------nh~Lr~  481 (1517)
T KOG1883|consen  410 IQKNALDDAFLEVVKLFNLLFPGDLVWMGAPDINKALFARFLAAACIWIHLEKKACTDFADKMPPL--------NHTLRS  481 (1517)
T ss_pred             hhhhhHHHHHHHHHHHHHhhcCcceeeecCCCcCHHHHHHHHHHhhhhhhhhhhhccchhhccCcc--------cHHHHH
Confidence            999999999999999832              2238999999999999999999999999999999        899999


Q ss_pred             chHHHHHHHHHHHHHHHHhhhccchhhhhhhhhhccccccCCCCCCCCcchhhhhhccccceEEEEeecchHHhcCHHHh
Q 000514          543 NHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQL  622 (1450)
Q Consensus       543 nhv~wll~q~i~~~~v~~al~~~~~~V~t~~~ilsf~~~d~~~d~n~pqs~~~df~~s~q~l~iw~ln~~~~~~l~~~~l  622 (1450)
                       |+ |+|+|++|.+.+|    +|-.||+++++|+  |++++..|+++|++.+||+++||||+|||.+.+++|+++++++|
T Consensus       482 -H~-~fLqq~vr~~~~m----~n~~kia~l~niy--~~~t~~~~~~~Pm~~LLe~i~~~~t~ri~~lst~~~A~~~~t~l  553 (1517)
T KOG1883|consen  482 -HI-KFLQQGVRNFDSM----SNDAKIALLCNIY--RTSTNMEKFIVPMGQLLESISSNGTKRIPELSTKRMAVNSFTAL  553 (1517)
T ss_pred             -HH-HHHHHHHHhhhhc----cchHHHHHHHHHH--hccccccccCCcHHHHHHHHhcCCccccCCCCcceeeecccchh
Confidence             88 9999999999999    5567999999999  99999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHhhcCCccccccccCcccceeeeeehhccccchhhHHHHHhhcCccccccCCCCCCCCccccccccccc
Q 000514          623 QKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNP  702 (1450)
Q Consensus       623 q~~k~~~eww~~~~kgk~~~dy~N~Dd~~i~m~~VlS~~~a~P~~dtvm~~l~~~~v~e~ipg~~~~pn~si~a~~~~tP  702 (1450)
                      -+++ +|+||...     ||||+++|++.+||||+++.++|+|.|++..+|.++++..+                     
T Consensus       554 pv~~-lDslt~~s-----kmsli~~~~~~l~sf~tv~l~~aq~~~~va~~~~s~~~~~~---------------------  606 (1517)
T KOG1883|consen  554 PVEF-LDSLTVHS-----KMSLIHQCFQPLRSFSTVRLKSAQVKETVAKACESEDYEMA---------------------  606 (1517)
T ss_pred             hHHH-HHHHHHHH-----HHHHHHhcccccceeEEEEecccccchhhhhccccchhhhh---------------------
Confidence            9999 99999966     89999999999999999999999999988999988666655                     


Q ss_pred             cchhhhhhhhHHHHHHHHHHHHHhhhcCCCcCCchHHHHHHHhhhcccc-chhhhh------------hhhhhhccchhh
Q 000514          703 LPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPH-SLFRSL------------FSHLAQRNPSLL  769 (1450)
Q Consensus       703 LpmsLLDsLTvHaKmsLl~qI~~~lfs~~~lPSPAlVETYsRLLvyte~-sL~iK~------------F~~LsQ~lpsV~  769 (1450)
                                                       -|.+|||+|+++|+|+ ++++|+            |  ++|.+|+|+
T Consensus       607 ---------------------------------~~~le~~arllv~~ei~sl~isg~~~~~~~~~~~~F--lsqllptv~  651 (1517)
T KOG1883|consen  607 ---------------------------------VALLETYARLLVYVEIESLGISGEHQNVQAKDQCYF--LSQLLPTVF  651 (1517)
T ss_pred             ---------------------------------hcccchhhhhheeeeeeccccCchhhhhhhHHhhhH--HHHHHHHHH
Confidence                                             2457888888888888 577777            7  999999999


Q ss_pred             h--ccchhhHHHHHHhccc---cccccccCCchhhHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhhh---------
Q 000514          770 A--KVGVTPLVLEIVNYRL---LPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQR---------  835 (1450)
Q Consensus       770 k--a~giLhtLLEilSYRL---~p~YRyqlks~~llhsL~~iis~l~nq~qnH~llrllEs~~LrLIl~l~---------  835 (1450)
                      +  +|+.+|+++|++|||+   +++||.|+.+.  +|.+..+  ++.|.+|.|.   |+|++++|+|+++|         
T Consensus       652 ~~hay~~l~tl~~~~syr~hhiq~~~r~~ll~~--l~~~~lv--p~~~~~g~h~---ci~s~a~rliTalk~ae~~~q~~  724 (1517)
T KOG1883|consen  652 KHHAYSKLHTLVEMFSYRTHHIQNHYRVQLLSR--LHELFLV--PQTNWAGLHL---CIESTALRLITALKSAEMQPQFA  724 (1517)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH--HHHHHhh--HHHHhhhhhh---hHHHHHHHHHHHhcccchhHhHh
Confidence            9  9999999999999999   89999999997  8988777  8999999998   99999999999986         


Q ss_pred             cccccccCCCCcchhhHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHhhCCCCCchhhhccCc-HHHHHHHhcc
Q 000514          836 DFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFP-SLLRDALIGR  914 (1450)
Q Consensus       836 rf~~~kk~~~~ps~~SEELNR~LILTLARsIKitGiad~~~g~~~~~~L~~Im~ntph~WpekTLr~FP-~~Lre~f~~n  914 (1450)
                      |||++|.||++|++|||||||++|+||||++||||++|.++|.|||+||++|+++|||+||+||++||| ..|..+|.+|
T Consensus       725 ~ffs~k~pg~~psa~seeLnR~~IlTlara~kvtggad~i~~vw~ktml~tIi~~t~h~W~ektls~FP~~aL~a~~~q~  804 (1517)
T KOG1883|consen  725 RFFSDKVPGQVPSAESEELNRMLILTLARAVKVTGGADDIQGVWCKTMLPTIINTTPHGWPEKTLSCFPKWALDAIFAQN  804 (1517)
T ss_pred             hhcccCCCCcCcccccHHHHHHHHHHHHHHhhcccCCCchhhHHHHHHHHHHHhcCCCCCchhhhhhCCcHHHHHHHhcC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999 5666666555


Q ss_pred             cCCCCcchhhHHHHHHHHHHHHhhccCCCCChhhHhhhhcccCCCCCcchHHHHHHHhhCCCCCCCchhHHHHHhhcChh
Q 000514          915 IDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPE  994 (1450)
Q Consensus       915 iD~~~l~i~n~qql~ttVeeE~rql~Sms~E~~~V~~yi~hf~p~~~~fLCllw~ml~~~~~dnIns~~~yrVLerispk  994 (1450)
                          |.+++||||++++|+||||+|+||+|||+||..|+.|-  .||+|||+++...|.+|+||||+++ |||||++|||
T Consensus       805 ----~~~~en~qql~~~V~ne~r~~tSmsnen~~V~~yl~~~--~p~~~lCll~~~~m~~~teNIns~~-yrVLe~ispr  877 (1517)
T KOG1883|consen  805 ----NSPAENTQQLKKDVENEYRMWTSMSNENDIVIHYLEDR--DPPLFLCLLFAYKMVDETENINSEF-YRVLEKISPR  877 (1517)
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhccCC--CchhHHHHHHHHHhcccccccCHHH-HHHHHhcCHH
Confidence                88999999999999999999999999995555555442  4799999996666666999999999 9999999999


Q ss_pred             HHHHhhhhhhchhhhhhhccccCCCchhHHHHHHHhHhhhhhhhccccchhhhhhhhccCCCCCc-----hhHHHHHhcC
Q 000514          995 EVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPH-----ALRIVITLLD 1069 (1450)
Q Consensus       995 eltahvr~fvDyLV~ef~~~lq~g~~~Q~lv~k~v~~LndmIWkynIvpLDRLLLaLilR~dEg~-----~liIQlLLL~ 1069 (1450)
                      |+++|+||||||||+|++.+    .++|++++||+++||+||||||++|+||||||||||++||+     ++|||+||++
T Consensus       878 elva~~~tlvDyLvad~~t~----~~~e~~l~k~~~~la~mvwkf~vl~lDrllL~Limr~~~~nda~vc~~Ia~~lLlt  953 (1517)
T KOG1883|consen  878 ELVAHGRTLVDYLVADAKTS----DCGEKTLKKCAKALALMVWKFNVLTLDRLLLCLIMRPHEGNDAQVCIQIAQLLLLT  953 (1517)
T ss_pred             HHHHHHHHHHHHhhhhhhcc----cchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccccCCcchhHHHHHHHHhcC
Confidence            99999999999999999854    66799999999999999999999999999999999998777     5555655555


Q ss_pred             cHHHHHHHHHHHHcCCCCCcccccch------hhhhhhHHH---Hccc--CCCCCCCCcchhhhHhhhcCchhHHHHHHh
Q 000514         1070 RQELQQRVKLYCMNRGPPEHWLYSGL------FKRVELQKA---LGNH--LSWKERYPTFFDDIAARLLPVIPLIVYRLI 1138 (1450)
Q Consensus      1070 ~~EFqnRV~~Fv~~~~spEHW~qsd~------yhrkfPEea---Lg~~--~s~~~~lPvYFgNVclR~LPViDivIhR~L 1138 (1450)
                      + |||+||++||+. |+||||+ ++|      ||++|||+.   ++++  .+.++|||+||||||+|||||+|+|+||+|
T Consensus       954 p-df~~RI~~yck~-nsPeHwl-~~~~~k~~~yhka~pe~~~~e~~~qyd~~~~~~lPtyf~~v~~RlLPV~d~vlhr~l 1030 (1517)
T KOG1883|consen  954 P-DFRNRIRWYCKQ-NSPEHWL-TEWIKKHVKYHKAYPEKEACELARQYDSSSNVHLPTYFGNVCLRLLPVMDQVLHRFL 1030 (1517)
T ss_pred             H-HHHHHHHHHHhc-CCcchhh-HHHHHHHHHHHHhcchHHHHHHHHhcCCccccCCccHHHHHHHHHhccHHHHHHHHH
Confidence            5 999999999996 9999999 888      799999964   4555  344789999999999999999999999999


Q ss_pred             cCCcc-chHHHHHHhhhhhhhcCCcchHHHHHHHHhhhccC---ch--HHHHHHHhhccCCCCCCCcchhhhccCCCCCC
Q 000514         1139 ENDAM-DSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHL---PG--KLIVRILNVFDLSKIPFSESFPQHISSSNPVM 1212 (1450)
Q Consensus      1139 E~~~~-k~letLL~~~g~LYkYHd~PvTFvYntL~Yye~~L---p~--kLV~~ILg~Ld~~r~~LSEsF~~y~~~~~~~w 1212 (1450)
                      |+.++ |.+++||+|+|.||||||+|||||||||||||+||   |+  |||.+|.++|++  ++|||+|.||+++++..|
T Consensus      1031 E~~~~~k~~~~lL~hls~lykfH~~pitflyntl~y~~~hL~~~p~kk~lv~a~~~~lse--i~lSE~f~k~~~q~~ap~ 1108 (1517)
T KOG1883|consen 1031 ELQGVEKLLPQLLDHLSMLYKFHDRPITFLYNTLHYYEHHLRDRPLKKKLVLAIATQLSE--IRLSEAFEKFNHQKGAPW 1108 (1517)
T ss_pred             HHhhHHHHHHHHHHHHHHHHhcCCCceehhHHHHHHHHhhhhcCcchhhHHHHHhhhhhh--CccchhHHHHhccCCCCC
Confidence            99998 99999999999999999999999999999999999   44  799999999998  569999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhccccccccCCCCCCcccccccCCCCCCCCCCCCCCCCCCccCcccccCCCCcchhhhhhhccch
Q 000514         1213 CPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVI 1292 (1450)
Q Consensus      1213 ~Pd~~Yy~~Ll~RLVnnvl~~~~~~~~s~~~~~as~r~~~t~f~a~s~~~P~~fs~~DWRF~EfpNPga~alyvL~tACI 1292 (1450)
                      +|+++|||.||+||||++.+++                            ||+|+.+||||+||||||+||+|   .+||
T Consensus      1109 ~pel~y~~sLi~rLvdt~~~~l----------------------------~~~f~ncdwR~~e~~n~~a~al~---~~cv 1157 (1517)
T KOG1883|consen 1109 SPELDYYMSLIDRLVDTLDGKL----------------------------TPPFVNCDWRFNEFPNPGAHALY---VTCV 1157 (1517)
T ss_pred             CCcHHHHHHHHHHHHhhcCCCC----------------------------CCCCcccccccccCCCccccccc---cchh
Confidence            9999999999999998886541                            34788899999999999999977   6889


Q ss_pred             hhccCCCCHHHHHHHHHHHhhccCCccccCCCCCcccccccCCC-CCCCCCCCCCcccccccCCCCCccc----------
Q 000514         1293 EILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQG-SVLPTSPSGGSTDSLGASRSTPSVS---------- 1361 (1450)
Q Consensus      1293 ELMaLPv~p~~Vv~aLIDVV~~~~s~~p~~~~~~~~~iNaIGLi-taLP~Sys~~~~d~i~~~~Stp~~s---------- 1361 (1450)
                      |+|++|++|..+|++|+||++++|+.+|+.    +.|+|++|++ +|||++||.++||++++..++|++.          
T Consensus      1158 elma~~~sgp~~asalinv~~~~q~~~p~~----~~~~na~~l~itaLP~~y~~~l~d~lv~vivnp~~t~~t~~~gf~~ 1233 (1517)
T KOG1883|consen 1158 ELMALPVSGPTVASALINVMQMKQHARPFN----QLIVNATGLLITALPEPYWNALHDRLVAVIVNPQSTGETANLGFEF 1233 (1517)
T ss_pred             hhcCCCCCcHhHHHHHHHHHhhCCCCCchh----HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHcCccccchhhcCCCce
Confidence            999999999999999999999999999933    6799999999 9999999999999999987776655          


Q ss_pred             --------------------------------CccccccccCCcccchhhhhHHHHHhhhhhhcCChhHHHHHHHHHHhH
Q 000514         1362 --------------------------------GINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRI 1409 (1450)
Q Consensus      1362 --------------------------------g~n~s~f~s~~~~~~~~ls~l~iqacgllLaqlP~~fh~~~y~e~~r~ 1409 (1450)
                                                      |++..+|.||+ |||++|+|..+|+|++.|++||++||.++|+|++|.
T Consensus      1234 ~~fd~~~~s~l~~~ps~a~Tl~a~s~s~~lh~si~~lsf~sr~-yt~~ll~cvkte~~llyl~~L~~pfl~r~qle~~r~ 1312 (1517)
T KOG1883|consen 1234 ILFDFYEESLLLNEPSRARTLNAISHSVWLHCSISLLSFFSRE-YTERLLPCVKTEKQLLYLLHLVGPFLQRKQLESQRE 1312 (1517)
T ss_pred             eeccccchhccccCCccchhhHHHHhHHHhhcchHHHHhhhHH-hHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhhhh
Confidence                                            78888999999 999999999999999999999999999999999999


Q ss_pred             hhh-ccccccCCCCcchhhhhhcccccCCcccccCCCc
Q 000514         1410 IKE-SWWLADGKRSLGELDSAVGYALLDPTWAAQDNTS 1446 (1450)
Q Consensus      1410 ~k~-~wwl~d~~~~~~e~d~~~gy~~~dp~w~~~d~t~ 1446 (1450)
                      ..| .|||.|++++.+|.|  |||+++||+|+++||++
T Consensus      1313 ~~e~~~~l~d~l~s~~e~~--v~l~ymdpicd~~yn~k 1348 (1517)
T KOG1883|consen 1313 NFEIVVLLYDKLGSVDEEG--VELVYMDPICDFLYNCK 1348 (1517)
T ss_pred             hhhhHHHHHHHhhhhhhcC--CceeecchHHHHHhhhh
Confidence            999 999999999999999  99999999999999998

>PF11573 Med23: Mediator complex subunit 23; InterPro: IPR021629 Med23 is one of the subunits of the Tail portion of the Mediator complex that regulates RNA polymerase II activity Back     alignment and domain information
>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1450
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 77.2 bits (189), Expect = 3e-14
 Identities = 96/636 (15%), Positives = 186/636 (29%), Gaps = 189/636 (29%)

Query: 802  DITK-IISA------LKVKRGDHRVLRLAENLC----------MNLILSQR-DFF--SLK 841
            D+ K I+S       +  K      LRL   L           +  +L     F    +K
Sbjct: 40   DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99

Query: 842  REGKG----STEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQI---------- 887
             E +     +  + E  +R+       +     ++     L L+  L ++          
Sbjct: 100  TEQRQPSMMTRMYIEQRDRLY--NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157

Query: 888  MATSQHTW-------SEKTLRYFPSLLRDAL----IGRIDKRGLTIQAWQQAETTVINQC 936
            +  S  TW       S K            +    +   +     ++  Q+    +    
Sbjct: 158  VLGSGKTWVALDVCLSYKVQCKMD----FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 937  TQLLSPSADPTY----VKTYLSHSFPQHRQY----LCAGAWILMQGHPENINSANLL--- 985
            T     S++       ++  L     + + Y    L     +L      N+ +A      
Sbjct: 214  TSRSDHSSNIKLRIHSIQAELRRLL-KSKPYENCLL-----VL-----LNVQNAKAWNAF 262

Query: 986  ----RVLREFSPEEVTSNIYTMVDVL---------LHHIHVELQRGHSLQDLLFKACANI 1032
                ++L       +T+    + D L         L H  + L         L     + 
Sbjct: 263  NLSCKIL-------LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS--LLLKYLDC 313

Query: 1033 SFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLY 1092
                L  E+L  +   L++I                                   ++W +
Sbjct: 314  RPQDLPREVLTTNPRRLSIIAESIRDGLATW------------------------DNWKH 349

Query: 1093 SGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPV---IPLIV-----YRLIENDAMD 1144
                K   + ++  N L   E Y   FD ++  + P    IP I+     + +I++D M 
Sbjct: 350  VNCDKLTTIIESSLNVLEPAE-YRKMFDRLS--VFPPSAHIPTILLSLIWFDVIKSDVMV 406

Query: 1145 SADRVLATYS--------SFLAYYPLRFSFVRDILAYFYGHLPGKLIV---RILNVF--- 1190
              ++ L  YS        S ++   +       +   +  H   + IV    I   F   
Sbjct: 407  VVNK-LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH---RSIVDHYNIPKTFDSD 462

Query: 1191 DLSKIPFSESFPQHIS--SSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASL 1248
            DL      + F  HI     N      +  F  +           L++       ++  +
Sbjct: 463  DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF----------LDFR-----FLEQKI 507

Query: 1249 RAPHNKSPMTSQSGPSNVSEGRKEFYQN----QDPGTYTQLVLETAVIEILS-LPVSASQ 1303
            R  H+ +   +     N    + +FY+      DP  Y +L     V  IL  LP     
Sbjct: 508  R--HDSTAWNASGSILNTL-QQLKFYKPYICDNDP-KYERL-----VNAILDFLPKIEEN 558

Query: 1304 IVSS----LVQIVVNIQPTLIQTSNGPYGASNSVGQ 1335
            ++ S    L++I       L+      +  ++   Q
Sbjct: 559  LICSKYTDLLRI------ALMAEDEAIFEEAHKQVQ 588
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00