Citrus Sinensis ID: 000515

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450

MGQVANVQVPKRTRSPPVTSANGLSWDNPQFASNDSKRPALSSSTWDDHAEFLGNYTNSLPQQDQSRALPHANSYDDERSFMGQVATVEGPKQTSAPPITSANGVSPENPHSKRQSNRSNAVFGAPNSQVLQRSAPSSKSAVGATRSNVYPVPKRTRSPPLPSVGQDLQENSNFTQYDAEREMQAKAKRLARFKVELSENVQISPEITDQKVSNSGRGQSVVERQKFVGGHSIESAKDYPNENTLSDNEGLEASSVIIGSCPDMCPESERAERERKGDLDRYERLDGDRNQTNEYLAVKKYNRTAEREANLIRPMPILQKTVGYLLDLLDQPYDERFLGLYNFLWDRMRAIRMDLRMQHIFNQEAITMLEQMIRLHIIAMHELCEYTKGEGFSEGFDAHLNIEQMNKTSVELFQMYDDHRKRGLIISTEKEFRGYYALLKLDKHPGYKVEPAELSLDLAKMTPEIRQTPEVLFARSVARACRTGNFIAFFRLARKASYLQACLMHAHFSKLRTQALASLYSGLQNNQGLPVAHVGRWLGMEEEDIESLLEYHGFSIKEFEEPYMVKEGPFLNSDKDYPTKCSKLVLLKRSGRMVEDMSASSPVTPPAEPTKAMQLDNKYKSDIEAIPSVERKICVPVVEEEMPDSVAISSPKNSIAFRPMIEASMVDQQSQDDHQRTGASVFPWVFSAPHSSPISRPAKFLTEEKQNGDVLFGISPEKKMFSDMEGSPTQLVARTEALQDRSPSSKRYDYSVGSSLQQGAAIKSVQYEEPQDTHQEGENIKVVQDENNEVMKNYASAKLKLILRLWRRRSLKQKELRKQRQLAANTALNSLSLGPPIRQNSDQPSTCGEFDIDHVMRERSEKHDRSWSRLNVSDAIAGILGRRNPKAKCLCWKIVLCSHACLEGDRQMQRKQISDLAAELWLFSKLKPSEKDDGDVVFASPGLSIWKKWIPSQSGTDLICCFSFVKEMEFNHVNDAVSGASAVLFLVSESIPWKLQKVQLNKLVMSIPSGSCLPLLILSCSFDKEALDPCAVIINELGLSELDKSRVNRVLVKFLVGDQQSSHSDEFFSDEQLREGLQWLASESPLQPVVYCMRTRELILTCLSSALEVLGKSSDYEVSPNHCISAFNEALDQSLVEIVAAAKANPSNWPCPEIALVEDSGDDNFMEDWCFPSLGWNSVGRIESLEHALRDLKLPSFPDDISFLGRGCEMGKEIENQRLQLENLLINYLTLSSKMMAVPLARKEASIMLQRSARLELHNSCYYIVPKWVMIFRRIFSWRLMILNNGAVSSSYVLEQHLVSHTSGDLDKSGLEGTRSSPYVHLSLDEMMGVGRTSHPFQQEITEAGCGPILTQVAQTQPQVHQPAMASNSDDIQDHANTNSMVEEGERNRSEKNKWTVANDISYVTSKLNNTAGEIAVSPNVTKETDNLSKLFEQCHLVQNTNESKLYFYF

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccEEccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHccHHHHccHHHHHHHHHHHHHHHccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccHHHHHHHHHHHccEEccccccEEEEccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHccccccccccccEEcccccEEEEEEccccccccEEEEEEEEEcccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHccccccccEEEEEcccccccccHHHHHHHHHcccccccccccEEEEEEEEcccccccccccccHHHHHHHHHHHHHccccccccEEccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccEEEEcHHHHHHHHHHHHHHHHHccccccccEEEEccccccccccccccccccccccccccccccHHHccccccccccHHHHHHccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccc

cccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccHcccccccHHcHHHHHHHHHHHHHHHHHHcccccccHHHcccccccccccccHHHHHHHHHHHcccHHEEcccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHccHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHcccEEEccccEEEEEcccccccccccccHHHHHHHHHccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEcEEcHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccEEEEEEEEEcccccccccccccccccHHHHHHHHHHHHccccccccccEEcccccEHHEEEccccccccEEEEEEEEEEcccccHHHHHccccEEEEEEcccccHHHHHHHHHHHHHHccccccccEEEEEccccccccccHHHHHHHccccccHHHHccccEEEEEEccccccccccccccHHHHHHHHHHHHccccccccEHHHHHHHHHHHHcHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccHHHHHHHHccccccccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccEEEEccccEEEcHHHHHHHHHHHHHHHHHcccccccHEEEEEccccccccccccccccccccccccccccccccccccccccccHHHHEEEccccccccccccccccccccccccccccccccccccHcccccHccccccccccccccccccccccccccEEEEccccccHHHHHHHHHHHHHHHHHHHcccEEEEc

mgqvanvqvpkrtrsppvtsanglswdnpqfasndskrpalssstwdDHAEFLgnytnslpqqdqsralphansyddersfmgqvatvegpkqtsappitsangvspenphskrqsnrsnavfgapnsqvlqrsapssksavgatrsnvypvpkrtrspplpsvgqdlqensnftQYDAEREMQAKAKRLARFKVElsenvqispeitdqkvsnsgrgqsVVERqkfvgghsiesakdypnentlsdnegleassviigscpdmcpeseraererkgdldryerldgdrnqtnEYLAVKKYNRTaereanlirpmpilQKTVGYLLDlldqpyderFLGLYNFLWDRMRAIRMDLRMQHIFNQEAITMLEQMIRLHIIAMHELceytkgegfsegfdaHLNIEQMNKTSVELFQMYDDhrkrgliisTEKEFRGYYALLKldkhpgykvepaelsldlakmtpeirqtPEVLFARSVARACRTGNFIAFFRLARKASYLQACLMHAHFSKLRTQALASLYSglqnnqglpvahvgrwlgMEEEDIESLLEYHgfsikefeepymvkegpflnsdkdyptkcsKLVLLKRSgrmvedmsasspvtppaeptkamqldnkyksdieaipsverkicvpvveeempdsvaisspknsiafrpmieasmvdqqsqddhqrtgasvfpwvfsaphsspisrpakflteekqngdvlfgispekkmfsdmegspTQLVARTEAlqdrspsskrydysvgsslqqgaaiksvqyeepqdthqegenikvvqDENNEVMKNYASAKLKLILRLWRRRSLKQKELRKQRQLAANTAlnslslgppirqnsdqpstcgefdiDHVMRERsekhdrswsrLNVSDAIAGilgrrnpkakclcwkivlcshaclegdRQMQRKQISDLAAELWLFsklkpsekddgdvvfaspglsiwkkwipsqsgtdlicCFSFVKEmefnhvndavsGASAVLFLVSESIPWKLQKVQLNKLVmsipsgsclpllilscsfdkealdPCAVIINelglseldksRVNRVLVKFLVgdqqsshsdeffsdEQLREGLQWLasesplqpvvyCMRTRELILTCLSSALEVlgkssdyevspnhCISAFNEALDQSLVEIVAAAkanpsnwpcpeialvedsgddnfmedwcfpslgwnsvgrIESLEHALrdlklpsfpddisflgrgceMGKEIENQRLQLENLLINYLTLSSKMMAVPLARKEASIMLQRSARLELhnscyyivpKWVMIFRRIFSWRLMILNNGAVSSSYVLEQHLVshtsgdldksglegtrsspyvhlsldemmgvgrtshpfqqeiteagcgpiltqvaqtqpqvhqpamasnsddiqdhantnsmveegernrseknkwtvANDISYVTSKLnntageiavspnvtketDNLSKLFEQCHLvqntnesklyfyf

mgqvanvqvpkrtrsppvtsanglswdnpqfasndskRPALSSSTWDDHAEFLGNYTNSLPQQDQSRALPHANSYDDERSFMGQVATVEGPKQTSAPPITSANGVSPENPHSKRQSNRSNAVFGApnsqvlqrsapssksavgatrsnvypvpkrtrspplpsvgqdlqeNSNFTQYDAEREMQAKAKRLARFKVelsenvqispeitdqkvsnsgrgqSVVERQKfvgghsiesakdypnenTLSDNEGLEASSVIIgscpdmcpeseraererkgdldryerldgdrnqtneylavkkynrtaereanlirpmpilQKTVGYLLDLLDQPYDERFLGLYNFLWDRMRAIRMDLRMQHIFNQEAITMLEQMIRLHIIAMHELCEYTKGEGFSEGFDAHLNIEQMNKTSVELFQMYDDHRKRGLIISTEKEFRGYYALLKLDKHPGYKVEPAELSLDLAKMTPEIRQTPEVLFARSVARACRTGNFIAFFRLARKASYLQACLMHAHFSKLRTQALASLYSGLQNNQGLPVAHVGRWLGMEEEDIESLLEYHGFSIKEFEEPYMVKEGpflnsdkdyptKCSKLVLLKRSgrmvedmsasspvtppaeptkamqldnkyksdieaipsveRKICVPVveeempdsvaissPKNSIAFRPMIEASMVDQQSQDDHQRTGASVFPWVFSAPHSSPISRPAKFLTEEKQNGDVLFGISPEKKMFSDMEGSPTQLVARTealqdrspsskrydysVGSSLQQGAAIKSVQYeepqdthqegenikvvqdenNEVMKNYASAKLKLILRLWRRRSLKQKELRKQRQLAAntalnslslgppirqnsdqpsTCGEFDIDHVMRErsekhdrswsrlNVSDAIAGILGRRNPKAKCLCWKIVLCSHACLEGDRQMQRKQISDLAAELWLFSKlkpsekddgdvVFASPGLSIWKKWIPSQSGTDLICCFSFVKEMEFNHVNDAVSGASAVLFLVSESIPWKLQKVQLNKLVMSIPSGSCLPLLILSCSFDKEALDPCAVIINElglseldksRVNRVLVKFlvgdqqsshsdEFFSDEQLREGLQWLASESPLQPVVYCMRTRELILTCLSSALEVLGKSSDYEVSPNHCISAFNEALDQSLVEIVAAAKanpsnwpcPEIALVEDSGDDNFMEDWCFPSLGWNSVGRIESLEHALRDLKLPSFPDDISFLGRGCEMGKEIENQRLQLENLLINYLTLSSKMMAVPLARKEASIMLQRSARLELHNSCYYIVPKWVMIFRRIFSWRLMILNNGAVSSSYVLEQHLVSHtsgdldksglegTRSSPYVHLSLDEMMGVGRTSHPFQQEITEAGCGPILTQVAQTQPQVHQPAMASNSDDIQDHANTNSMveegernrseknkwtvANDISYVTSKLNNTAGEIAVSPNVTKETDNLSKLFEqchlvqntnesklyfyf

MGQVANVQVPKRTRSPPVTSANGLSWDNPQFASNDSKRPALSSSTWDDHAEFLGNYTNSLPQQDQSRALPHANSYDDERSFMGQVATVEGPKQTSAPPITSANGVSPENPHSKRQSNRSNAVFGAPNSQVLQRSAPSSKSAVGATRSNVYPVPKRTRSPPLPSVGQDLQENSNFTQYDAEREMQAKAKRLARFKVELSENVQISPEITDQKVSNSGRGQSVVERQKFVGGHSIESAKDYPNENTLSDNEGLEASSVIIGSCPDMCPESERAERERKGDLDRYERLDGDRNQTNEYLAVKKYNRTAEREANLIRPMPILQKTVGYLLDLLDQPYDERFLGLYNFLWDRMRAIRMDLRMQHIFNQEAITMLEQMIRLHIIAMHELCEYTKGEGFSEGFDAHLNIEQMNKTSVELFQMYDDHRKRGLIISTEKEFRGYYALLKLDKHPGYKVEPAELSLDLAKMTPEIRQTPEVLFARSVARACRTGNFIAFFRLARKASYLQACLMHAHFSKLRTQALASLYSGLQNNQGLPVAHVGRWLGMEEEDIESLLEYHGFSIKEFEEPYMVKEGPFLNSDKDYPTKCSKLVLLKRSGRMVEDMSASSPVTPPAEPTKAMQLDNKYKSDIEAIPSVERKICVPVVEEEMPDSVAISSPKNSIAFRPMIEASMVDQQSQDDHQRTGASVFPWVFSAPHSSPISRPAKFLTEEKQNGDVLFGISPEKKMFSDMEGSPTQLVARTEALQDRSPSSKRYDYSVGSSLQQGAAIKSVQYEEPQDTHQEGENIKVVQDENNEVMKNYASAklklilrlwrrrslkQKELRKQRQlaantalnslslGPPIRQNSDQPSTCGEFDIDHVMRERSEKHDRSWSRLNVSDAIAGILGRRNPKAKCLCWKIVLCSHACLEGDRQMQRKQISDLAAELWLFSKLKPSEKDDGDVVFASPGLSIWKKWIPSQSGTDLICCFSFVKEMEFNHVNDAVSGASAVLFLVSESIPWKLQKVQLNKLVMSIPSGSCLPLLILSCSFDKEALDPCAVIINELGLSELDKSRVNRVLVKFLVGDQQSSHSDEFFSDEQLREGLQWLASESPLQPVVYCMRTRELILTCLSSALEVLGKSSDYEVSPNHCISAFNEALDQSLVEIVAAAKANPSNWPCPEIALVEDSGDDNFMEDWCFPSLGWNSVGRIESLEHALRDLKLPSFPDDISFLGRGCEMGKEIENQRLQLENLLINYLTLSSKMMAVPLARKEASIMLQRSARLELHNSCYYIVPKWVMIFRRIFSWRLMILNNGAVSSSYVLEQHLVSHTSGDLDKSGLEGTRSSPYVHLSLDEMMGVGRTSHPFQQEITEAGCGPILTQVAQTQPQVHQPAMASNSDDIQDHANTNSMVEEGERNRSEKNKWTVANDISYVTSKLNNTAGEIAVSPNVTKETDNLSKLFEQCHLVQNTNESKLYFYF

******************************************************************************************************************************************************************************************************************************************************************************************************YLAVKKYNRTAEREANLIRPMPILQKTVGYLLDLLDQPYDERFLGLYNFLWDRMRAIRMDLRMQHIFNQEAITMLEQMIRLHIIAMHELCEYTKGEGFSEGFDAHLNIEQMNKTSVELFQMYDDHRKRGLIISTEKEFRGYYALLKLDKHPGYKVEPAELSLDLAKMTPEIRQTPEVLFARSVARACRTGNFIAFFRLARKASYLQACLMHAHFSKLRTQALASLYSGLQNNQGLPVAHVGRWLGMEEEDIESLLEYHGFSIKEFEEPYMVKEGPFLNSDKDYPTKCSKLVLL****************************************SVERKICVPVV******************************************VFPWVF*******************************************************************************************************VMKNYASAKLKLILRLWRRR*********************************************************WSRLNVSDAIAGILGRRNPKAKCLCWKIVLCSHACLEGDRQMQRKQISDLAAELWLFSKLK*****DGDVVFASPGLSIWKKWIPSQSGTDLICCFSFVKEMEFNHVNDAVSGASAVLFLVSESIPWKLQKVQLNKLVMSIPSGSCLPLLILSCSFDKEALDPCAVIINELGLSELDKSRVNRVLVKFLVGD**************LREGLQWLASESPLQPVVYCMRTRELILTCLSSALEVLGKSSDYEVSPNHCISAFNEALDQSLVEIVAAAKANPSNWPCPEIALVEDSGDDNFMEDWCFPSLGWNSVGRIESLEHALRDLKLPSFPDDISFLGRGCEMGKEIENQRLQLENLLINYLTLSSKMMAVPLARKEASIMLQRSARLELHNSCYYIVPKWVMIFRRIFSWRLMILNNGAVSSSYVLEQHLVS****************************************ITEAGCGPILT*******************************************WTVANDISYVTSKLNNTAGEIAVSPNVTKETDNLSKLFEQCHLVQNTNESKLYFY*

**************************************************************************************************************************************************************************************************************************************************************SVIIGSCPDMCPESERAERERKGDLDRYERLDGDRNQTNEYLAVKKYNRTAE**ANLIRPMPILQKTVGYLLDLLDQPYDERFLGLYNFLWDRMRAIRMDLRMQHIFNQEAITMLEQMIRLHIIAMHELCEYTKG****EGFDAHLNIEQMNKTSVELFQMYDDHRKRGLIISTEKEFRGYYALLKLDKHPGYKVEPAELSLDLAKMTPEIRQTPEVLFARSVARACRTGNFIAFFRLARKASYLQACLMHAHFSKLRTQALASLYSGLQNNQGLPVAHVGRWLGMEEEDIESLLEYHGFSIKEFEEPYMVKEGPFL*************V***RSG*MV**************************************************************************************************************************************************************************************************************LILRLWR***********************************************V***R***HDRSWSRLNVSDAIAGILGRRNPKAKCLCWKIVLCSHAC************SDLAAELWLFSKLKPSEKDDGDVVFASPGLSIWKKWIPSQSGTDLICCFSFVKEMEFNHVNDAVSGASAVLFLVSESIPWKLQKVQLNKLVMSIPSGSCLPLLILSCSFDKEALDPCAVIINELGLSELDKSRVNRVLVKFLVGDQQSSHSDEFFSDEQLREGLQWLASESPLQPVVYCMRTRELILTCLSSA**************NHCISAFNEALDQSLVEIVAAAKANPSNWPCPEIALVEDSGDDNFMEDWCFPSLGWNSVGRIESLEHALRDLKLPSFPDDISFLGRGCEMGKEIENQRLQLENLLINYLTLSSKMMAVPLARKEASIMLQRSARLELHNSCYYIVPKWVMIFRRIFSWRLMILNNGAVSSSYVLEQHL********************YVHLSLDEMMGVGRTSHPFQQEITEAGCGP****************************NTNSMVEE******E**KWTVANDI**************************LSKLFEQCHLVQNTNESKLYFYF

********************ANGLSWDNPQFAS***********TWDDHAEFLGNYTNSLPQQDQSRALPHANSYDDERSFMGQVATVEGPKQTSAPPIT******************SNAVFGAPNS*****************RSNVYPVPKRTRSPPLPSVGQDLQENSNFTQYDAEREMQAKAKRLARFKVELSENVQISPEIT***********SVVERQKFVGGHSIESAKDYPNENTLSDNEGLEASSVIIGSCPDMC***********GDLDRYERLDGDRNQTNEYLAVKKYNRTAEREANLIRPMPILQKTVGYLLDLLDQPYDERFLGLYNFLWDRMRAIRMDLRMQHIFNQEAITMLEQMIRLHIIAMHELCEYTKGEGFSEGFDAHLNIEQMNKTSVELFQMYDDHRKRGLIISTEKEFRGYYALLKLDKHPGYKVEPAELSLDLAKMTPEIRQTPEVLFARSVARACRTGNFIAFFRLARKASYLQACLMHAHFSKLRTQALASLYSGLQNNQGLPVAHVGRWLGMEEEDIESLLEYHGFSIKEFEEPYMVKEGPFLNSDKDYPTKCSKLVLLKRSGR*****************TKAMQLDNKYKSDIEAIPSVERKICVPVVEEEMPDSVAISSPKNSIAFRPMIEAS************TGASVFPWVFSAPHSSPISRPAKFLTEEKQNGDVLFGISPEKKMFSDMEGSPTQLVARTE********************QQGAAIKSVQ*********EGENIKVVQDENNEVMKNYASAKLKLILRLWRRRSLK********QLAANTALNSLSLGPPIRQNSDQPSTCGEFDIDHVMR**********SRLNVSDAIAGILGRRNPKAKCLCWKIVLCSHACLEGDRQMQRKQISDLAAELWLFSKLKPSEKDDGDVVFASPGLSIWKKWIPSQSGTDLICCFSFVKEMEFNHVNDAVSGASAVLFLVSESIPWKLQKVQLNKLVMSIPSGSCLPLLILSCSFDKEALDPCAVIINELGLSELDKSRVNRVLVKFLVGDQQSSHSDEFFSDEQLREGLQWLASESPLQPVVYCMRTRELILTCLSSALEVLGKSSDYEVSPNHCISAFNEALDQSLVEIVAAAKANPSNWPCPEIALVEDSGDDNFMEDWCFPSLGWNSVGRIESLEHALRDLKLPSFPDDISFLGRGCEMGKEIENQRLQLENLLINYLTLSSKMMAVPLARKEASIMLQRSARLELHNSCYYIVPKWVMIFRRIFSWRLMILNNGAVSSSYVLEQHLVSHTSGDLDKSGLEGTRSSPYVHLSLDEMMGVGRTSHPFQQEITEAGCGPILTQVAQ*************SDDIQDHANTNS***********KNKWTVANDISYVTSKLNNTAGEIAVSPNVTKETDNLSKLFEQCHLVQNTNESKLYFYF

*********************************************************************************************************************************************************************************************************************************KFVGGHSIESAKDYPNENTLSDNEGLEASSVIIGSCPDMCPESERAERERKGDLDRYERLDGDRNQTNEYLAVKKYNRTAEREANLIRPMPILQKTVGYLLDLLDQPYDERFLGLYNFLWDRMRAIRMDLRMQHIFNQEAITMLEQMIRLHIIAMHELCEYTKGEGFSEGFDAHLNIEQMNKTSVELFQMYDDHRKRGLIISTEKEFRGYYALLKLDKHPGYKVEPAELSLDLAKMTPEIRQTPEVLFARSVARACRTGNFIAFFRLARKASYLQACLMHAHFSKLRTQALASLYSGLQNNQGLPVAHVGRWLGMEEEDIESLLEYHGFSIKEFEEPYMVKEGPFLNSDKDYPTKCSKLVLLKRSGRMVEDMSASSPVTPP*****************************************************************************************************************************************************************************IKVVQDENNEVMKNYASAKLKLILRLWRRRSLKQKELRKQRQLAANTALNSLSLGPPIRQNSDQPSTCGEFDIDHVMRERSEKHDRSWSRLNVSDAIAGILGRRNPKAKCLCWKIVLCSHAC*********KQISDLAAELWLFSKLKPSEKDDGDVVFASPGLSIWKKWIPSQSGTDLICCFSFVKEMEFNHVNDAVSGASAVLFLVSESIPWKLQKVQLNKLVMSIPSGSCLPLLILSCSFDKEALDPCAVIINELGLSELDKSRVNRVLVKFLVGDQQSSHSDEFFSDEQLREGLQWLASESPLQPVVYCMRTRELILTCLSSALEVLGKSSDYEVSPNHCISAFNEALDQSLVEIVAAAKANPSNWPCPEIALVEDSGDDNFMEDWCFPSLGWNSVGRIESLEHALRDLKLPSFPDDISFLGRGCEMGKEIENQRLQLENLLINYLTLSSKMMAVPLARKEASIMLQRSARLELHNSCYYIVPKWVMIFRRIFSWRLMILNNGAVSSSYVLEQHLVS************************DEMMGVGRTSHPFQQEITEAGCGPILTQV*****************************E********KNKWTVANDISYVTSKLNNTAGEIAVSPNVTKETDNLSKLFEQCHLVQNTNESKLYFYF

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1450	2.2.26 [Sep-21-2011]
Q9WUU9		1971	80 kDa MCM3-associated pr	yes	no	0.202	0.149	0.343	2e-47
O60318		1980	80 kDa MCM3-associated pr	yes	no	0.243	0.178	0.316	2e-45
O74889		1024	SAC3 family protein 1 OS=	yes	no	0.231	0.327	0.285	1e-29
Q9U3V9		1370	Protein xmas-2 OS=Drosoph	yes	no	0.201	0.213	0.291	2e-27
Q9USI4		458	SAC3 family protein 2 OS=	no	no	0.209	0.663	0.294	1e-24
P46674		1301	Nuclear mRNA export prote	yes	no	0.204	0.228	0.288	4e-19
A6NKF1		404	SAC3 domain-containing pr	no	no	0.222	0.797	0.269	1e-14
A6H687		427	SAC3 domain-containing pr	no	no	0.224	0.763	0.259	4e-10
Q32NW2		800	Leukocyte receptor cluste	N/A	no	0.157	0.286	0.223	5e-06
A4QNR8		839	Leukocyte receptor cluste	no	no	0.128	0.221	0.237	4e-05

>sp\|Q9WUU9\|MCM3A_MOUSE 80 kDa MCM3-associated protein OS=Mus musculus GN=Mcm3ap PE=2 SV=2	Back alignment and function desciption

 Score =  192 bits (488), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 109/317 (34%), Positives = 177/317 (55%), Gaps = 23/317 (7%)

Query: 251 LEASSVIIGSCPDMCPESERAERERKGDLDRYERLDGDRNQTNEYLAVKKYNRT-AEREA 309
           L+ +   +G+CPDMCPE ER  RE +  L  +E + G  +Q +   AVK+Y+R+ A++E 
Sbjct: 620 LDKARAFVGTCPDMCPEKERYLRETRSQLSVFEVVPGT-DQVDHAAAVKEYSRSSADQEE 678

Query: 310 NL---IRPMPILQKTVGYLLDLLDQPYDERFLGLYNFLWDRMRAIRMDLRMQHIFNQEAI 366
            L   +RP  +L +T+ YL+  +    +      Y+F+W+R R IR D+  QH+ +   +
Sbjct: 679 PLPHELRPSAVLSRTMDYLVTQIMDQKEGSLRDWYDFVWNRTRGIRKDITQQHLCDPLTV 738

Query: 367 TMLEQMIRLHIIAMHELCEYTKGEGFSEGFDAHLNIEQMNKTSVELFQMYDDHRKRGLII 426
           +++E+  R HI   H +CE    E  S  FDA +N E M K    L +MY D R +G+  
Sbjct: 739 SLIEKCTRFHIHCAHFMCE----EPMS-SFDAKINNENMTKCLQSLKEMYQDLRNKGVFC 793

Query: 427 STEKEFRGYYALLKLDKHPGYKVEPAELSLDLAKMTPEIRQTPEVLFARSVARACRTGNF 486
           ++E EF+GY  LL L+K         ++  ++ +  P++R +PEV FA     A  + NF
Sbjct: 794 ASEAEFQGYNVLLNLNK--------GDILREVQQFHPDVRNSPEVNFAVQAFAALNSNNF 845

Query: 487 IAFFRLARKASYLQACLMHAHFSKLRTQALASL---YS-GLQNNQGLPVAHVGRWLGMEE 542
           + FF+L + ASYL ACL+H +F+++R  AL +L   Y+   Q +   P+  V R L   +
Sbjct: 846 VRFFKLVQSASYLNACLLHCYFNQIRKDALRALNVAYTVSTQRSTVFPLDGVVRMLLFRD 905

Query: 543 -EDIESLLEYHGFSIKE 558
            E+  + L YHG ++ +
Sbjct: 906 SEEATNFLNYHGLTVAD 922

May be involved in the nuclear localization pathway of MCM3.
Mus musculus (taxid: 10090)

>sp\|O60318\|MCM3A_HUMAN 80 kDa MCM3-associated protein OS=Homo sapiens GN=MCM3AP PE=1 SV=2	Back alignment and function description

>sp\|O74889\|SAC31_SCHPO SAC3 family protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC576.05 PE=1 SV=1	Back alignment and function description

>sp\|Q9U3V9\|XMAS2_DROME Protein xmas-2 OS=Drosophila melanogaster GN=xmas-2 PE=1 SV=3	Back alignment and function description

>sp\|Q9USI4\|SAC32_SCHPO SAC3 family protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC70.06 PE=3 SV=1	Back alignment and function description

>sp\|P46674\|SAC3_YEAST Nuclear mRNA export protein SAC3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SAC3 PE=1 SV=2	Back alignment and function description

>sp\|A6NKF1\|SAC31_HUMAN SAC3 domain-containing protein 1 OS=Homo sapiens GN=SAC3D1 PE=1 SV=2	Back alignment and function description

>sp\|A6H687\|SAC31_MOUSE SAC3 domain-containing protein 1 OS=Mus musculus GN=Sac3d1 PE=1 SV=1	Back alignment and function description

>sp\|Q32NW2\|LENG8_XENLA Leukocyte receptor cluster member 8 homolog OS=Xenopus laevis GN=leng8 PE=2 SV=1	Back alignment and function description

>sp\|A4QNR8\|LENG8_DANRE Leukocyte receptor cluster member 8 homolog OS=Danio rerio GN=leng8 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1450
225432468		1557	PREDICTED: uncharacterized protein LOC10	0.980	0.913	0.568	0.0
255551549		1646	80 kD MCM3-associated protein, putative	0.974	0.858	0.569	0.0
356557855		1556	PREDICTED: uncharacterized protein LOC10	0.937	0.874	0.513	0.0
356546458		1869	PREDICTED: uncharacterized protein LOC10	0.942	0.730	0.507	0.0
357447585		1564	G1121 protein [Medicago truncatula] gi\|3	0.942	0.873	0.493	0.0
297736952		1213	unnamed protein product [Vitis vinifera]	0.743	0.888	0.581	0.0
449433355		1368	PREDICTED: uncharacterized protein LOC10	0.908	0.962	0.480	0.0
297833372		1703	hypothetical protein ARALYDRAFT_477928 [	0.882	0.751	0.476	0.0
449495502		1454	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.930	0.927	0.474	0.0
145338181		1697	SAC3/GANP/Nin1/mts3/eIF-3 p25 family pro	0.888	0.759	0.481	0.0

>gi\|225432468\|ref\|XP_002277304.1\| PREDICTED: uncharacterized protein LOC100266559 [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1573 bits (4074), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 833/1465 (56%), Positives = 1040/1465 (70%), Gaps = 43/1465 (2%)

Query: 6    NVQVPKRTRSPPVTSANGLSWDNPQFASNDSKRPALSSSTWDDHAEFLGNYTNSLPQQDQ 65
            N  V +RTRSPP+      S +  +    ++++ +LSSS W    E   +Y N    Q  
Sbjct: 116  NRLVLQRTRSPPLAHEKNHSLEGFRSPFAEAQQSSLSSSGWGHRPEVPSSYANLPTHQSV 175

Query: 66   SRALPHANSYDDERSFMGQVATVEGPKQTSAPPITSANGVSPENPH-----SKRQSNR-- 118
                P+  SYD  RS   ++   + PK+T +PPI  AN V   N H     SKR S    
Sbjct: 176  GSVSPYVGSYDSRRSSPTKITDAQVPKRTRSPPILPANEVFQGNIHLAQNNSKRPSISPP 235

Query: 119  ---SNAVFGAPNSQVLQRSAPSSKSAVGATRSNVYPVP-KRTRSPPLPSVGQDLQENSNF 174
                ++V   P SQ+L++S PS  S + A  +   P    RTRSPPL S     Q NS  
Sbjct: 236  RFGGSSVHAPPASQILKKSPPSMLS-IDAEAAATKPTSISRTRSPPLHSNDHVFQGNSFS 294

Query: 175  TQYDAEREMQAKAKRLARFKVELSENVQISPEITDQKVSNSGRGQSVVERQKFVGGHSIE 234
            TQ D EREMQAKAKRLARFKVEL + VQ S +I +QK+S +    S+VE+Q+  G HS++
Sbjct: 295  TQDDTEREMQAKAKRLARFKVELEQPVQSSFDIANQKISANRHDLSMVEKQQLAGEHSVD 354

Query: 235  SAKDYPNENTLSDNEGLEASSVIIGSCPDMCPESERAERERKGDLDRYERLDGDRNQTNE 294
             A+ +P+ N L+D+EGLE  S+IIG CPDMCPESERAERERKGDLD+YERLDGDRNQT++
Sbjct: 355  VARSFPDGNALADHEGLEPPSIIIGLCPDMCPESERAERERKGDLDQYERLDGDRNQTSQ 414

Query: 295  YLAVKKYNRTAEREANLIRPMPILQKTVGYLLDLLDQPYDERFLGLYNFLWDRMRAIRMD 354
            YLA+KKYNRTAEREA LIRPMP+LQ+T+ YLL+LL +PYD+RFLG+YNFLWDRMRAIRMD
Sbjct: 415  YLAIKKYNRTAEREAVLIRPMPVLQQTIDYLLNLLYEPYDDRFLGMYNFLWDRMRAIRMD 474

Query: 355  LRMQHIFNQEAITMLEQMIRLHIIAMHELCEYTKGEGFSEGFDAHLNIEQMNKTSVELFQ 414
            LRMQHIF+ +AI+MLEQMIRLHIIAMHELCEYTKGEGFSEGFDAHLNIEQMNKTSVELFQ
Sbjct: 475  LRMQHIFDLQAISMLEQMIRLHIIAMHELCEYTKGEGFSEGFDAHLNIEQMNKTSVELFQ 534

Query: 415  MYDDHRKRGLIISTEKEFRGYYALLKLDKHPGYKVEPAELSLDLAKMTPEIRQTPEVLFA 474
            MYDDHRK+G+I+ TEKEFRGYYALLKLDKHPGYKVEPAELSLDLAKMTPE+RQTPEV+FA
Sbjct: 535  MYDDHRKKGIIVPTEKEFRGYYALLKLDKHPGYKVEPAELSLDLAKMTPEMRQTPEVVFA 594

Query: 475  RSVARACRTGNFIAFFRLARKASYLQACLMHAHFSKLRTQALASLYSGLQNNQGLPVAHV 534
            R VARACRT NFIAFFRL +KASYLQACLMHAHF+KLRTQALASL+ GLQNNQGLPVAHV
Sbjct: 595  RDVARACRTSNFIAFFRLGKKASYLQACLMHAHFAKLRTQALASLHCGLQNNQGLPVAHV 654

Query: 535  GRWLGMEEEDIESLLEYHGFSIKEFEEPYMVKEGPFLNSDKDYPTKCSKLVLLKRSGRMV 594
             RWLGMEEEDIESL+EYHGF IKEFEEPYMVKEGPFLN+DKDY TKCS+LV  K+S  +V
Sbjct: 655  ARWLGMEEEDIESLIEYHGFLIKEFEEPYMVKEGPFLNADKDYLTKCSELVHSKKSNTIV 714

Query: 595  EDMSAS-SPVTPPAEPTKAMQLDNKYKSDIEAIPSVERKICVPVVEEEMPDSVAISSPKN 653
            ED+++S   ++ P+     +QL   Y  +  A   V +    P ++EEM D  A+SSPK+
Sbjct: 715  EDVASSCQSMSLPSAKATELQLSKDYNHEPIATAPVGKNDYDPAMDEEMADFEAVSSPKD 774

Query: 654  SIAFRPMIEASMVDQQSQDDHQRTGASVFPWVFSAPHSSPISRPAKFLTEEKQNGDVLFG 713
                + M+  S V QQS D H     S     F+    SP S+P K     + N D LF 
Sbjct: 775  GTPIQLMLGPSTVSQQSADGHWVASVSSMACDFALAQKSPESQPTKVGKVGQPNFDALFR 834

Query: 714  ISPEKKMFSDMEGSPTQLVARTEALQDRSPSSKRYDYSVGSSLQQGAAIKSVQYEEPQDT 773
             S EK+  S ME  P+Q+V+ T  +Q+R P ++ ++Y V +S+ Q   IK ++ EE  D 
Sbjct: 835  NSLEKRRQSHMEAMPSQVVS-TPVMQERFPVTE-FNYPVENSVPQTVVIKDIEDEELTDI 892

Query: 774  HQEGENIKVVQDENNEVMKNYASAKLKLILRLWRRRSLKQKELRKQRQLAANTALNSLSL 833
            HQE EN  V   +  EV    A AKLKLILR+WRRRS K++ELR+QRQLAA+ AL+ LSL
Sbjct: 893  HQEVENDVVASSQVEEV----AEAKLKLILRIWRRRSSKRRELREQRQLAASAALDLLSL 948

Query: 834  GPPIRQNSDQPSTCGEFDIDHVMRERSEKHDRSWSRLNVSDAIAGILGRRNPKAKCLCWK 893
            GPPI+ N DQPST  EF+ID +MRER +KH++SWSRLNVS+ +A  L  RNP +KCLCWK
Sbjct: 949  GPPIQHNEDQPSTFSEFNIDQIMRERYQKHEQSWSRLNVSEVVADKLSGRNPDSKCLCWK 1008

Query: 894  IVLCSHACLEGDRQM-QRKQISDLAAELWLFSKLKPSEK-DDGDVVFASPGLSIWKKWIP 951
            I++CS     G   M  R Q++  AA  WL SKL P+ K DD  +V + PGLS+W+KW+P
Sbjct: 1009 IIVCSQMNNPGGENMGHRSQVAHFAAGTWLLSKLLPTRKDDDAGLVISLPGLSMWEKWMP 1068

Query: 952  SQSGTDLICCFSFVKEMEFNHVNDAVSGASAVLFLVSESIPWKLQKVQLNKLVMSIPSGS 1011
            SQS  D+ CC S V E +F+++N    GASAVLFLVSESIP +LQKV+L+ L+MS+PSGS
Sbjct: 1069 SQSDADMTCCLSIVVEAKFDNLNQTALGASAVLFLVSESIPLELQKVRLHNLLMSLPSGS 1128

Query: 1012 CLPLLILSCSFDKEALDPCAVIINELGLSELDKSRVNRVLVKFLVGDQQSSHSDEFFSDE 1071
            CLPLLILS ++ K+A DP + II+ELGL+ +D+SRV+R  V FLV DQQ+ H+D FFSDE
Sbjct: 1129 CLPLLILSGTYKKDASDPSSAIIDELGLNSIDRSRVSRFSVVFLVQDQQTEHTDGFFSDE 1188

Query: 1072 QLREGLQWLASESPLQPVVYCMRTRELILTCLSSALEVLGKSSDYEVSPNHCISAFNEAL 1131
            QLR+GL WLASESPLQP+++C++TREL+LT L+ +LEVL   + YEV P+ CISAFN+AL
Sbjct: 1189 QLRKGLYWLASESPLQPILHCVKTRELVLTHLNCSLEVLENMNIYEVGPDQCISAFNDAL 1248

Query: 1132 DQSLVEIVAAAKANPSNWPCPEIALVEDSGDDNFMEDWCFPSLGWNSVGRIESLEHALRD 1191
            D+S  EI  AA AN ++WPCPEIAL+E+SG ++       PS+ W+S  RIE L  ALR 
Sbjct: 1249 DRSQGEICVAADANRTSWPCPEIALLEESGHEHRAIKLYLPSIRWSSAARIEPLVCALRG 1308

Query: 1192 LKLPSFPDDISFLGRGCEMGKEIENQRLQLENLLINYLTLSSKMMAVPLARKEASIMLQR 1251
             KLP+FPDDIS+L RG  MG+EIENQR  LEN LI YLT  SKMM + LA++E  +MLQ 
Sbjct: 1309 CKLPTFPDDISWLNRGSSMGQEIENQRSLLENCLIRYLTQLSKMMGLALAKREVHVMLQN 1368

Query: 1252 SARLELHNSCYYIVPKWVMIFRRIFSWRLMILNNGAVSSSYVLEQHLVSHT-SGDLDKSG 1310
            S +LELHNS YYIVPKWVMIFRR+F+W+LM L++G  S++YVLE +  + T SG  DK G
Sbjct: 1369 STKLELHNSSYYIVPKWVMIFRRVFNWQLMSLSSGPASAAYVLEHYSAAPTKSGSSDKPG 1428

Query: 1311 LEGTRSSPY--VHLSLDEMMGVGRTSHPFQQEITEAGCGPILTQVAQTQPQVHQPA--MA 1366
            LEG+RSSPY  +H +LDEM+              E GC P+L++  Q++P+  QP   + 
Sbjct: 1429 LEGSRSSPYCLIHPTLDEMV--------------EVGCSPLLSRKGQSEPEPFQPLPRLV 1474

Query: 1367 SNSDDIQDHANTNSMVEEGERNRSEKNKWTVANDISYVTSKLNNTAG-EIAVSPNVTKET 1425
             +S  +Q++ NTN + EE E N  +  +   +N  +Y T  L  T   E+ V    T   
Sbjct: 1475 YDSSHVQEY-NTNDL-EEDEENFVQGVELAESNGYTYSTDGLRATGSRELVVVTEATMGA 1532

Query: 1426 DNLSKLFEQCHLVQNTNESKLYFYF 1450
              LSKL EQC+ +QN  + KL  YF
Sbjct: 1533 GKLSKLVEQCNRLQNMIDKKLSVYF 1557

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255551549\|ref\|XP_002516820.1\| 80 kD MCM3-associated protein, putative [Ricinus communis] gi\|223543908\|gb\|EEF45434.1\| 80 kD MCM3-associated protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356557855\|ref\|XP_003547226.1\| PREDICTED: uncharacterized protein LOC100777150 [Glycine max]	Back alignment and taxonomy information

>gi\|356546458\|ref\|XP_003541643.1\| PREDICTED: uncharacterized protein LOC100817727 [Glycine max]	Back alignment and taxonomy information

>gi\|357447585\|ref\|XP_003594068.1\| G1121 protein [Medicago truncatula] gi\|355483116\|gb\|AES64319.1\| G1121 protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297736952\|emb\|CBI26153.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449433355\|ref\|XP_004134463.1\| PREDICTED: uncharacterized protein LOC101205161 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297833372\|ref\|XP_002884568.1\| hypothetical protein ARALYDRAFT_477928 [Arabidopsis lyrata subsp. lyrata] gi\|297330408\|gb\|EFH60827.1\| hypothetical protein ARALYDRAFT_477928 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|449495502\|ref\|XP_004159860.1\| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101205161 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|145338181\|ref\|NP_187280.3\| SAC3/GANP/Nin1/mts3/eIF-3 p25 family protein [Arabidopsis thaliana] gi\|332640848\|gb\|AEE74369.1\| SAC3/GANP/Nin1/mts3/eIF-3 p25 family protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1450
TAIR\|locus:2082485		1697	SAC3B "AT3G06290" [Arabidopsis	0.48	0.410	0.534	7.9e-300
TAIR\|locus:2096189		406	SAC3C "AT3G54380" [Arabidopsis	0.229	0.820	0.354	1.1e-47
ZFIN\|ZDB-GENE-040715-1		2118	mcm3ap "MCM3 minichromosome ma	0.293	0.200	0.301	6e-45
MGI\|MGI:1930089		1971	Mcm3ap "minichromosome mainten	0.241	0.177	0.327	1.3e-44
RGD\|1306834		1908	Mcm3ap "minichromosome mainten	0.242	0.184	0.326	1.7e-44
UNIPROTKB\|F1NVG3		1659	MCM3AP "Uncharacterized protei	0.246	0.215	0.329	2.1e-44
UNIPROTKB\|E1BJE7		1979	MCM3AP "Uncharacterized protei	0.246	0.180	0.323	5.1e-43
UNIPROTKB\|O60318		1980	MCM3AP "80 kDa MCM3-associated	0.242	0.177	0.321	2.7e-42
UNIPROTKB\|I3LCF4		1990	MCM3AP "Uncharacterized protei	0.244	0.178	0.315	2.9e-42
FB\|FBgn0028974		1370	xmas-2 "xmas-2" [Drosophila me	0.228	0.241	0.282	2e-27

TAIR\|locus:2082485 SAC3B "AT3G06290" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1722 (611.2 bits), Expect = 7.9e-300, Sum P(2) = 7.9e-300
 Identities = 391/732 (53%), Positives = 487/732 (66%)

Query:     6 NVQVPKRTRSPPVTSANGLSWDNPQFASNDSKRPALSSSTWDDHAEFLGNYTNSLPQQDQ 65
             N+   +R +SP     NG   D   F    S+    S S+ +++     +  N L  Q+Q
Sbjct:   232 NMGFSRRNQSPVSGFENGNLVDG--FQPLSSRTWMRSPSSAENNPVRSRSNPNQLIHQEQ 289

Query:    66 S--RALPHANSYDDERSFMGQVATVEGP--KQTSAPPITSANGVSPENPHSKRQSNRSNA 121
             +   + P+A+   + +    + ++   P  K     PI S +     +        +S  
Sbjct:   290 TGNSSFPYAHEVAEIQEATRRKSSAVAPSDKPLGDDPILSQHDSQRFSTSPPTSGTKSYT 349

Query:   122 VFGAPNSQVLQRSAPSSKSAVG-ATRSNVYPVPKRTRSPPLPSVGQDLQENSNFTQYDAE 180
             +  + +SQ      PSS ++   A ++N  P  KRTRSPP+  + +D+  NS  +Q   E
Sbjct:   350 LSRSSDSQF--PGQPSSVNSFNNARKTNSSPATKRTRSPPVYPIEEDIPRNSFPSQDCTE 407

Query:   181 REMQAKAKRLARFKVELSENVQISP---EITDQKVSNSGRGQSVVERQKFVGGHSIESAK 237
              E QA+AKRLARFK EL E +   P   ++T   V+ + +   +  +Q F   +S+ES++
Sbjct:   408 GEEQARAKRLARFKGEL-EPIADRPVDIQLTKSPVNKTMK--PLDNKQTF---NSLESSR 461

Query:   238 DYPNENTLSDNEGLEASSVIIGSCPDMCPESERAERERKGDLDRYERLDGDRNQTNEYLA 297
             D    + L D E  E  S+IIG CPDMCPESER ERERKGDLD YER+DGDRNQT++ LA
Sbjct:   462 DALKGDALPDYENSEQPSLIIGVCPDMCPESERGERERKGDLDHYERVDGDRNQTSKSLA 521

Query:   298 VKKYNRTAEREANLIRPMPILQKTVGYLLDLLDQPYDERFLGLYNFLWDRMRAIRMDLRM 357
             VKKY RTAEREA LIRPMPILQ T+ YLL LLD+PY+E FLG+YNFLWDRMRAIRMDLRM
Sbjct:   522 VKKYTRTAEREAILIRPMPILQNTMEYLLSLLDRPYNENFLGMYNFLWDRMRAIRMDLRM 581

Query:   358 QHIFNQEAITMLEQMIRLHIIAMHELCEYTKGEGFSEGFDAHLNIEQMNKTSVELFQMYD 417
             QHIFNQEAIT+LEQMIRLHIIAMHELCEYTKGEGFSEGFDAHLNIEQMNKTSVELFQMYD
Sbjct:   582 QHIFNQEAITLLEQMIRLHIIAMHELCEYTKGEGFSEGFDAHLNIEQMNKTSVELFQMYD 641

Query:   418 DHRKRGLIISTEKEFRGYYALLKLDKHPGYKVEPAELSLDLAKMTPEIRQTPEVLFARSV 477
             DHRK+G+ + TEKEFRGYYALLKLDKHPGYKVEP+ELSLDLA MTPEIRQT EVLFAR+V
Sbjct:   642 DHRKKGITVPTEKEFRGYYALLKLDKHPGYKVEPSELSLDLANMTPEIRQTSEVLFARNV 701

Query:   478 ARACRTGNFIAFFRLARKASYLQACLMHAHFSKLRTQALASLYSGLQNNQGLPVAHVGRW 537
             ARACRTGNFIAFFRLARKASYLQACLMHAHFSKLRTQALASL+SGLQ NQGLPV+ +  W
Sbjct:   702 ARACRTGNFIAFFRLARKASYLQACLMHAHFSKLRTQALASLHSGLQINQGLPVSDMSNW 761

Query:   538 LGMEEEDIESLLEYHGFSIKEFEEPYMVKEGPFLNSDKDYPTKCSKLVLLKRSGRMVEDM 597
             +GMEEEDIE+LLEYHGFSIK FEEPYMVK   FL++DKDY TKCSKLV +K+S  +VED+
Sbjct:   762 IGMEEEDIEALLEYHGFSIKVFEEPYMVKNDLFLHADKDYKTKCSKLVHMKKSRTIVEDV 821

Query:   598 SASSPVTPPAEPTKAMQLDNKYKSDIEAIPSVERKICVPVVEEEMPDSVAISSPKNSIAF 657
             SA + V   + P     L        EA  ++  + C+   + EMP + ++    +   F
Sbjct:   822 SAPTVVEDVSTPFPLPSLIT------EA--TIGNQQCITAHKHEMPPARSLKKQTSMRLF 873

Query:   658 RPMIEASMVDQQSQDDHQRTGASVFPWVFSAPHSSPISRPAKFLTEEKQNG-DVLFGISP 716
                +  S     +++D +  G     +V + P    I+ P   + +EKQN      G   
Sbjct:   874 DKEVADSKTSLLAEED-KPMGT----FVMNPPGPFVIN-PV--VHQEKQNDLTSAGGFHS 925

Query:   717 EKKMFSDMEGSP 728
               K++S   GSP
Sbjct:   926 PVKLYSPF-GSP 936

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0034399 "nuclear periphery" evidence=IDA

TAIR\|locus:2096189 SAC3C "AT3G54380" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040715-1 mcm3ap "MCM3 minichromosome maintenance deficient 3 (S. cerevisiae) associated protein" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:1930089 Mcm3ap "minichromosome maintenance deficient 3 (S. cerevisiae) associated protein" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1306834 Mcm3ap "minichromosome maintenance complex component 3 associated protein" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NVG3 MCM3AP "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BJE7 MCM3AP "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|O60318 MCM3AP "80 kDa MCM3-associated protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LCF4 MCM3AP "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

FB\|FBgn0028974 xmas-2 "xmas-2" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00019869001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (1295 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1450
COG5079		646	COG5079, SAC3, Nuclear protein export factor [Intr	5e-39
pfam03399		155	pfam03399, SAC3_GANP, SAC3/GANP/Nin1/mts3/eIF-3 p2	5e-17

>gnl\|CDD\|227411 COG5079, SAC3, Nuclear protein export factor [Intracellular trafficking and secretion / Cell division and chromosome partitioning]	Back alignment and domain information

 Score =  155 bits (393), Expect = 5e-39
 Identities = 89/329 (27%), Positives = 145/329 (44%), Gaps = 42/329 (12%)

Query: 251 LEASSVIIGSCPDMCPESERAERERKGDLDRYERLDGDRNQTNEYLAVKKYNRTAEREAN 310
           L ++ V +G+C DMCPE ER ER  + D+  YE  + +  + +  LAVK Y+R A  +  
Sbjct: 67  LPSAIVFVGTCMDMCPEFEREERVLQNDVSPYE-ANPNVKKASRTLAVKAYHRPAAGKHP 125

Query: 311 L----IRPMPILQKTVGYLLDLLDQPYDERFLGLYNFLWDRMRAIRMDLRMQHIFNQEAI 366
                +RP  +L KT+ YL+ L           ++ F+ DR RA+R D  +Q+   ++A+
Sbjct: 126 ELPSDVRPPEVLVKTIDYLVKLCAGDQLIE---MHRFVRDRTRAVRQDFTIQNEKGKDAV 182

Query: 367 TMLEQMIRLHIIAMHELCEYTKGEGFSEGFDAHLNIEQMNKTSVELFQMYDDHRKRGLII 426
              E++ R HI+ +H L +          F     +EQ+ K+   L ++YDD R      
Sbjct: 183 ECHERIARFHILFLHLLHD-------HPHFSKQQELEQLKKSLASLIELYDDGRAGKKEC 235

Query: 427 STEKEFRGYYALLKLDKHPGYKVEPAELSLDLAKMTPEIRQTPEVLFARSVARACRTGNF 486
             E EFR Y  L  L   P Y          +      I     V  A  + +  ++ NF
Sbjct: 236 PNEAEFRAYAILASL-GDPRY-------VAGIQGWPGGIFCDLPVQIALKLMQLAQSNNF 287

Query: 487 ---------------IAFFRLARKAS--YLQACLMHAHFSKLRTQALASLYSGLQN-NQG 528
                            FF+L +  S  YL  CL+  H   +R  AL ++   +++ ++ 
Sbjct: 288 RLLGRRNTEACFNLYTRFFKLIQSPSVQYLMGCLLEKHNISIRGGALKAMEKEIESAHKN 347

Query: 529 LPVAHVGRWLGMEEED-IESLLEYHGFSI 556
           +P   +   L  EE+   E   +Y+G  I
Sbjct: 348 IPFVDLSGILDFEEKGEGEEFCKYYGLEI 376

Length = 646

>gnl\|CDD\|217534 pfam03399, SAC3_GANP, SAC3/GANP/Nin1/mts3/eIF-3 p25 family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1450
KOG1860		927	consensus Nuclear protein export factor [Intracell	100.0
COG5079		646	SAC3 Nuclear protein export factor [Intracellular	100.0
KOG1861		540	consensus Leucine permease transcriptional regulat	100.0
PF03399		204	SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; I	100.0
PF10075		143	PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro	98.27
KOG3151		260	consensus 26S proteasome regulatory complex, subun	97.43
PF00025		175	Arf: ADP-ribosylation factor family The prints ent	95.45
KOG0075		186	consensus GTP-binding ADP-ribosylation factor-like	94.29
PF01399		105	PCI: PCI domain; InterPro: IPR000717 A homology do	93.93
cd04161		167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	93.01
smart00178		184	SAR Sar1p-like members of the Ras-family of small	91.01
cd04153		174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	86.32
KOG0071		180	consensus GTP-binding ADP-ribosylation factor Arf6	85.33

>KOG1860 consensus Nuclear protein export factor [Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

Probab=100.00  E-value=3e-96  Score=884.74  Aligned_cols=868  Identities=24%  Similarity=0.292  Sum_probs=652.0

Q ss_pred             CCCCCCCCCccccCCCCCccCCCCCCCCCcccccCcCCCchhHHHHHHHHHHHHHhhhhhhccccCCCccccCcccCCCC
Q 000515          137 SSKSAVGATRSNVYPVPKRTRSPPLPSVGQDLQENSNFTQYDAEREMQAKAKRLARFKVELSENVQISPEITDQKVSNSG  216 (1450)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~r~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~kR~~rf~~~~~~~~~~~~~i~~~~~~~~~  216 (1450)
                      .-.++++..++..+.++|+++.-|-|+..+-   +..+    ++-+.+++++|.+||...+.++..          ....
T Consensus        11 ~~~s~nn~~f~~~~~k~~~~~~~~~p~~~~r---~~~~----~~~d~~~~~~r~~~p~~~~~~~~~----------~~~l   73 (927)
T KOG1860|consen   11 IKKSPNNKGFQKKSAKPKGFETTPKPSSSDR---SFGS----SRSDPANMAARVARPSSLLERNAM----------LEPL   73 (927)
T ss_pred             cccCCCcccccccccCCCCCCCCCCcccccc---ccCC----CcccccchhccccCcccccchhhh----------hhhh
Confidence            3556777888888889998886666633322   3333    566788999999999996444433          1111


Q ss_pred             CCCChHHHhhhhcCCcccCCCCCCCCCcCCCccccccCccccccCCCCCCHHHHHHHHHhCCCCccccccCCCCCcchhh
Q 000515          217 RGQSVVERQKFVGGHSIESAKDYPNENTLSDNEGLEASSVIIGSCPDMCPESERAERERKGDLDRYERLDGDRNQTNEYL  296 (1450)
Q Consensus       217 ~~~~~~eR~k~~~~~l~ds~~d~~~~~~i~d~~~L~~a~~ivGTC~DMCPE~ER~~Re~e~~Ls~fEk~dg~~~~~d~~~  296 (1450)
                      ......++.-|..+++.|         +..+.++++.+..+||||+|||||+||++|+++++||.||+++ +++++++.+
T Consensus        74 ~~~r~~~~~~~~~~~~kd---------~~~~~~~~~~~~~~vGtC~dMCPE~Er~eRe~~~~l~~yE~~p-~~~~~~~~~  143 (927)
T KOG1860|consen   74 KGKRTFEQFEMERDALKD---------LLPKRENLEPAELFVGTCPDMCPEKERYEREREKDLHPYEVVP-DSKQASPSL  143 (927)
T ss_pred             hcccCChHHHHHHhhccc---------ccccccccchhhhhcccchhhCchHHHHHHHHhcCCCeeeecC-CCcccCHHH
Confidence            122223333444555553         3345678999999999999999999999999999999999976 778899999


Q ss_pred             hhhhcccCcccc----cccCCCHHHHHHHHHHHHHHhcCCCCccccchhhHHhhhhhhhhhhhhhhccCCchhHHHHHHH
Q 000515          297 AVKKYNRTAERE----ANLIRPMPILQKTVGYLLDLLDQPYDERFLGLYNFLWDRMRAIRMDLRMQHIFNQEAITMLEQM  372 (1450)
Q Consensus       297 AVKkYsRSAAge----PsdVRPP~VL~kTmdYLl~~I~~p~de~f~~~Y~FLwDRtRAIRQDLTvQ~i~~~eAI~VlEri  372 (1450)
                      |||+|+|||||+    |++||||+||.+||+||+++++..++.++..+|+||||||||||||||+||+++.+||.|+|+|
T Consensus       144 aVK~ysRPAAgke~pLPsdvRP~~VL~~T~dYLl~~v~~~~~~sl~~~y~FvwDRtRAVR~D~t~Q~~~d~~Av~llE~i  223 (927)
T KOG1860|consen  144 AVKEYSRPAAGKERPLPSDVRPPPVLVKTVDYLLGKVLCDKDISLREMYDFVWDRTRAVRQDFTIQNYSDQEAVELLERI  223 (927)
T ss_pred             HHHHhcCcccCCCCCCccccCCHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence            999999999874    6889999999999999999888767778899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhcccCCCCCcccchhhcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhcccCCCCCcChH
Q 000515          373 IRLHIIAMHELCEYTKGEGFSEGFDAHLNIEQMNKTSVELFQMYDDHRKRGLIISTEKEFRGYYALLKLDKHPGYKVEPA  452 (1450)
Q Consensus       373 ARFhIlslh~Lce~~~ge~~~e~FD~qqnlEQLnKcL~SL~elYdD~r~~Gi~~pNEAEFrAY~LLl~L~d~p~~~ve~~  452 (1450)
                      +||||+|.|+||+.+      +.||.|||+|||+|||++|.++|+|+++.|+.||||+|||||++|++|++.        
T Consensus       224 ~RfhI~~~h~Lce~~------~~Fda~~nlEQL~K~l~sL~elYdD~r~~g~~cpnE~EFR~Y~vLl~Lgd~--------  289 (927)
T KOG1860|consen  224 ARFHILFRHRLCEEP------EQFDAQQNLEQLQKCLQSLGELYDDLRKGGIPCPNEPEFRGYYVLLSLGDP--------  289 (927)
T ss_pred             HHHHHHHHHHhccCc------ccCChhHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhcCCc--------
Confidence            999999999999864      579999999999999999999999999999999999999999999999874        


Q ss_pred             HHHHHHHhcCHHHhcChhhhHHHHHHHHHhhCcHHHHHH------------------HHH--hccHHHHHHHHHHHHHHH
Q 000515          453 ELSLDLAKMTPEIRQTPEVLFARSVARACRTGNFIAFFR------------------LAR--KASYLQACLMHAHFSKLR  512 (1450)
Q Consensus       453 eL~~~L~qlp~eIr~sp~VqfAL~V~~A~~~gNYvRFFR------------------Llr--sapYL~ACLLe~~F~~VR  512 (1450)
                      ++...++.+|++++++..|++|+.++.|++.|||++|||                  |..  ..+||++|+++.||..+|
T Consensus       290 ~~~~~iq~~~~evr~~~~Vk~al~~~~a~~~nn~~~~~r~~~~~t~a~~~l~~~~~~l~q~p~~~~L~~~v~~~~f~~ir  369 (927)
T KOG1860|consen  290 QVVRDIQAWPDEVRQDSEVKLALCLRRAFQSNNFRRFFRLSSLRTEALQNLYTRFFKLMQSPALPYLMGCVLELFFPDIR  369 (927)
T ss_pred             hHHHHHHhcCcccccchhHHHHHHHHHHhccCCeeeeeeccchhHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence            356788899999999999999999999999999998875                  443  268999999999999999


Q ss_pred             HHHHHHHHhhcc-CCCCCCHHHHHHHhCCCh-HHHHHHHHHcCCeeccCCCccccccCCCCCCCCC-CCc----cchhhh
Q 000515          513 TQALASLYSGLQ-NNQGLPVAHVGRWLGMEE-EDIESLLEYHGFSIKEFEEPYMVKEGPFLNSDKD-YPT----KCSKLV  585 (1450)
Q Consensus       513 ~~AL~~L~kAy~-k~~~iPLs~LarlL~Fdd-EEa~eFce~hGL~v~~~ee~~lvk~g~f~~~~~~-~p~----~~s~LV  585 (1450)
                      ..||+.|.++|. ++..||+.+|.++|.|+. |+...+|.+|||+++.++...+...-.+...-.. .+.    ....|.
T Consensus       370 ~~al~~~~~~~~~~~~~vp~~~l~~~l~f~~~e~~~~~~~~y~Leis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~  449 (927)
T KOG1860|consen  370 WAALRAMSHAYNSKHVPVPLGKLDRILLFDGEEELKVVCNYYGLEISVDDKIVLSIGCHPNHVVTASKPQVLRKVLETLL  449 (927)
T ss_pred             HHHHHHHHHHHhccCCCcchhHHHHHHhcCChhhhHhhhhheeeEeeccccccccccCCcccccccccchHHHHHHHhhh
Confidence            999999999996 467899999999999997 7799999999999975433222211111111111 111    111233


Q ss_pred             hhccCCCcccccccCC-CCCCCCCCccccccccccccCccccc-ccccccccchhhccCCccccccCCCccccccccc--
Q 000515          586 LLKRSGRMVEDMSASS-PVTPPAEPTKAMQLDNKYKSDIEAIP-SVERKICVPVVEEEMPDSVAISSPKNSIAFRPMI--  661 (1450)
Q Consensus       586 esKR~~r~ledv~~~~-~~~~~~~~~~~~q~~~~~~~~~~a~~-~~~~~~~~~~~~ee~pd~~~~~sp~~~~~~~~~~--  661 (1450)
                      +..-..+.+.|...++ .....+...+            .++- .+..++..+..-+-+ ...+..++..++.++..+  
T Consensus       450 ~~~~~~~~~~~~~~g~~~~~~~~~~~~------------~~~~d~i~~~~~~~~~~pi~-~~~~~~~~~q~~~~~~~~~p  516 (927)
T KOG1860|consen  450 SPLIQRTLLADDINGGRGNRLSAKHMC------------PPISDLISLKIAVSSDIPIM-LNNTSKSLLQGSGFKPAKKP  516 (927)
T ss_pred             hcccCCcchhhhhcCCccccccccccC------------cccccccccccccccccccc-CcccchhhhccCCCCCCCCC
Confidence            3333344343333333 2112222211            1110 011122211111111 111222222222222222  


Q ss_pred             ----ccccccccChhhhhhccccccCCC--CCCCCCCCCCCCccccccccccCccccccCcccccccCccCCC------h
Q 000515          662 ----EASMVDQQSQDDHQRTGASVFPWV--FSAPHSSPISRPAKFLTEEKQNGDVLFGISPEKKMFSDMEGSP------T  729 (1450)
Q Consensus       662 ----~~~~v~~~a~~~~~~~~~~~f~~~--~~~~~~~~~~~~t~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~------~  729 (1450)
                          -.+...+..+...+.++.  |++.  +..|+..|..+     +  ++..++..|.+|+--.++....--      .
T Consensus       517 ~p~~~r~~l~~~~~~~i~~a~~--~~~~~~~~~p~~~p~i~-----~--~~~~~v~~~lsp~~~~~s~~~~~~e~~~~~~  587 (927)
T KOG1860|consen  517 APVVNRPNLLVVLDEEIQSASF--FGCINKSTLPFLVPVIH-----G--KQKTTVDEMLSPEECVFSVENSVREEIYAVM  587 (927)
T ss_pred             CCceechhHHHHhhhhhhcccc--ccCccccccccccceec-----c--ccccchhhccChhhhhhhhccceeecchhhh
Confidence                122225555555555554  4443  33344444221     1  334455566555554443332222      2


Q ss_pred             hhhhhhHHhhhcCCcccccccccCCCcchhhhhccccccCCccchhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 000515          730 QLVARTEALQDRSPSSKRYDYSVGSSLQQGAAIKSVQYEEPQDTHQEGENIKVVQDENNEVMKNYASAKLKLILRLWRRR  809 (1450)
Q Consensus       730 e~v~~~~a~~e~~pe~~r~~~e~~~~~~~~~~~~~~~~ee~~~~~~e~e~~~~~~~~~~~~~eeia~aklkl~lrlWrrr  809 (1450)
                      ...++.. +++ .|.+.+.++.-+..++......++..+.+ ++ ++..+. +...-..   |+|.+.+...+.|+|.+.
T Consensus       588 ~~i~~~~-~~~-~~ls~~~e~i~ee~~~~l~~~~~~~~~~r-d~-~~~~~~-iv~~~~~---e~V~~s~~~~l~~l~~~~  659 (927)
T KOG1860|consen  588 RSITQNK-AAE-KPLSVEVEEIREESVQALKNRKTTLKEFR-DG-MDIIEH-IVRLLYN---EVVGKSVEGNLARLFEEK  659 (927)
T ss_pred             hhccccc-ccc-ccchhhhHHHHHHHHHHHHHHHHHHHHHH-Hh-HHHHHH-HHHHHHH---HHHHHHHHHHHHHHHhhc
Confidence            2222222 222 34555444443344444444444444442 11 111111 2333333   889999999999999999


Q ss_pred             hHHHHHHHHHHhhHHHhhhhccCCCCCcccC-CCCCCccCccchHHHHHHHhhhhhcccCcCChhHHHHhhhhccCCCCc
Q 000515          810 SLKQKELRKQRQLAANTALNSLSLGPPIRQN-SDQPSTCGEFDIDHVMRERSEKHDRSWSRLNVSDAIAGILGRRNPKAK  888 (1450)
Q Consensus       810 a~~~relr~~R~l~a~aAL~sLsLG~p~~~~-~~~p~~~~~~di~~~mrer~e~~~~sws~Ldvs~~v~~~L~~rnP~a~  888 (1450)
                      ..++.++.+.++...-|+|..   |-|++-. +++-..|+++.++.+||++..+.++.|++|| ..-++++...|+|-  
T Consensus       660 ~~r~~~i~~~~~~~~~~~l~~---~~~~~~~~~~q~k~~~~~~~~~~~~r~~~r~e~~~~~ln-~~k~~~~~l~r~p~--  733 (927)
T KOG1860|consen  660 PYRECDIDEETEEVYLAVLRQ---QAPIRWDVRDQLKAAAKLKKIEMERRCVPRWEKEESRLN-VKKIEPINLQRLPI--  733 (927)
T ss_pred             hhHHHHHHHHHHHHHHHHHhh---cCCeEeeHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhcc-chhccccccccccc--
Confidence            999999999999999889988   8888877 8888899999999999999999999999999 99999999999995  


Q ss_pred             eeEEEEEEeccCCCCCchhhhhhhhhhHHHHHHHHhhcCCCCCCCCCceecCCCchhhhccccCCCCCceeEEEEEeeec
Q 000515          889 CLCWKIVLCSHACLEGDRQMQRKQISDLAAELWLFSKLKPSEKDDGDVVFASPGLSIWKKWIPSQSGTDLICCFSFVKEM  968 (1450)
Q Consensus       889 ~l~WKlvl~~~~~~~g~~~~~~~~~~~~~a~~WL~sKL~~~~~~~~~~~~~s~gLs~~~~w~~s~~~~~~~~c~~vvrd~  968 (1450)
                          |...|.+.-.++ +.++..+..|+.+..|+..|+|..-+-      +. +-..|++|+...++.+  ||...+.|.
T Consensus       734 ----K~~~~~~t~~~~-~~~ss~~~~~~~~~~~~s~~~~~~~k~------~~-~~~~w~~~~~n~~~~~--~~~~~~~~~  799 (927)
T KOG1860|consen  734 ----KSTHIQQTMFKD-RASSSLVLDSSQKWRLYSPKLMAFKKI------AE-KQKRWNELFANFSKCD--ETKFKFDDP  799 (927)
T ss_pred             ----cceeEeeeeccc-chhhhhccchhHHhcccchhhhHHHHH------hh-hHhHHHHHHhhhhhcc--ccccccCCc
Confidence                888888877655 455667778999999999999998533      24 9999999998888777  999999998


Q ss_pred             cc-ccccccccCcceEEEEeecCchhHHHHHHHHHHHhhcCCCCCCceEEEeccCCccCCChhHHHHhhhCCCccccCcc
Q 000515          969 EF-NHVNDAVSGASAVLFLVSESIPWKLQKVQLNKLVMSIPSGSCLPLLILSCSFDKEALDPCAVIINELGLSELDKSRV 1047 (1450)
Q Consensus       969 ~~-~~~~~~~~GasailFlvsE~~~~~~~r~~L~~ll~S~p~gs~lPLlil~~s~~~~~~~~~~~i~~~LgL~~i~~~~I 1047 (1450)
                      +. +.++.+.+|+|++.|...-  +.+.|..+++.+|++-+-++..|++++-+..++..+-|..++..+++++||+++++
T Consensus       800 ~~~~~~~~t~~~~s~~n~~~~~--~~n~~~~~~s~~ls~~~~~s~~~~~v~~~~~~~~~~l~~~~~~s~~~~~di~~~~~  877 (927)
T KOG1860|consen  800 DSWNKIIRTRSWNSSLNKKPVQ--QINLQSPQTSISLSRRHIQSVEPEAVLLTELKEKIDLPREDFNSGFEEHDIKKLQD  877 (927)
T ss_pred             chHhhhhhhhcchhhhhhcccc--ceeecchhhccchhcccccceeeeeeccccchhhhccchhhhhccccccchhHHHH
Confidence            66 6999999999999999887  88889999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEecCCccCCCCCcccchHHHHhHHHHhhccCCCCcceeecccHHH
Q 000515         1048 NRVLVKFLVGDQQSSHSDEFFSDEQLREGLQWLASESPLQPVVYCMRTREL 1098 (1450)
Q Consensus      1048 ~s~lvvfl~~~~~~~~~~gf~sd~~L~~gl~WLA~~~P~qP~l~~v~~rel 1098 (1450)
                      ..++...+..+.+.+-.-.|+.|-.|..++.| |++.+.|++++.++++||
T Consensus       878 ~~~~~~~~~~k~~~~~~~~~~~~~~l~~~~~~-aen~~m~~~l~~~k~~el  927 (927)
T KOG1860|consen  878 ALLSSNEALAKSQHGISVSVEADSPLLDIFWY-AENELMQAELRHRKLLEL  927 (927)
T ss_pred             HHhhhHHHHhhcccCceeEEecCchHHHHHHH-hccchhHHHHHHHHhccC
Confidence            99999999999999999999999999999999 999999999999998875

>COG5079 SAC3 Nuclear protein export factor [Intracellular trafficking and secretion / Cell division and chromosome partitioning]	Back alignment and domain information

>KOG1861 consensus Leucine permease transcriptional regulator [Transcription]	Back alignment and domain information

>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ]	Back alignment and domain information

>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8	Back alignment and domain information

>KOG3151 consensus 26S proteasome regulatory complex, subunit RPN12/PSMD8 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases	Back alignment and domain information

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]	Back alignment and domain information

>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins	Back alignment and domain information

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily	Back alignment and domain information

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases	Back alignment and domain information

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily	Back alignment and domain information

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1450
3t5v_A		316	Sac3:thp1:sem1 Complex Length = 316		8e-14

>pdb|3T5V|A Chain A, Sac3:thp1:sem1 Complex Length = 316

Back alignment and structure

Iteration: 1

Score = 77.0 bits (188), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 110/235 (46%), Gaps = 26/235 (11%) Query: 312 IRPMPILQKTVGYLLD--LLDQPYDERFLGLYNFLWDRMRAIRMDLRMQHIFNQEAITML 369 +RP IL KT+ Y++D L P E FLWDRMR+IR D Q+ EA+ Sbjct: 8 VRPPHILVKTLDYIVDNLLTTLPESE------GFLWDRMRSIRQDFTYQNYSGPEAVDCN 61 Query: 370 EQMIRLHIIAMHELCEYTKGEGFSEGFDAHLNIEQMNKTSVELFQMYDDHRKRGLIISTE 429 E+++R+H++ +H + + + F +EQ++K+ + L ++YDD R G E Sbjct: 62 ERIVRIHLLILHIMVKS------NVEFSLQQELEQLHKSLITLSEIYDDVRSSGGTCPNE 115 Query: 430 KEFRGYYALLKLDKHPGY----KVEPAELSLD-LAKMTPEIRQ--TPEVLFARSVARACR 482 EFR YALL + P Y + P + D L +M R+ + R + Sbjct: 116 AEFRA-YALLSKIRDPQYDENIQRLPKHIFQDKLVQMALCFRRVISNSAYTERGFVKTEN 174 Query: 483 TGNFIA-FFRLARKAS--YLQACLMHAHFSKLRTQALASLYSGLQNNQGLPVAHV 534 NF A FF+L + S L + H + +R AL +L L N + P+ + Sbjct: 175 CLNFYARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALRALSHTL-NKKHKPIPFI 228

PyMOL of 3t5v

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1450
3t5v_A		316	Nuclear mRNA export protein SAC3; PCI, mRNA nuclea	2e-58
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10

>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae} Length = 316	Back alignment and structure

 Score =  203 bits (517), Expect = 2e-58
 Identities = 64/307 (20%), Positives = 118/307 (38%), Gaps = 40/307 (13%)

Query: 312 IRPMPILQKTVGYLLDLLDQPYDERFLGLYNFLWDRMRAIRMDLRMQHIFNQEAITMLEQ 371
           +RP  IL KT+ Y++D L     E       FLWDRMR+IR D   Q+    EA+   E+
Sbjct: 8   VRPPHILVKTLDYIVDNLLTTLPE----SEGFLWDRMRSIRQDFTYQNYSGPEAVDCNER 63

Query: 372 MIRLHIIAMHELCEYTKGEGFSEGFDAHLNIEQMNKTSVELFQMYDDHRKRGLIISTEKE 431
           ++R+H++ +H + +       +  F     +EQ++K+ + L ++YDD R  G     E E
Sbjct: 64  IVRIHLLILHIMVKS------NVEFSLQQELEQLHKSLITLSEIYDDVRSSGGTCPNEAE 117

Query: 432 FRGYYALLKLDKHPGYKVEPAELSLDLAKMTPEIRQTPEVLFARSVARACR--------- 482
           FR Y  L K+               ++ ++   I Q   V  A    R            
Sbjct: 118 FRAYALLSKIRDPQ--------YDENIQRLPKHIFQDKLVQMALCFRRVISNSAYTERGF 169

Query: 483 ------TGNFIAFFRLARKA--SYLQACLMHAHFSKLRTQALASL-YSGLQNNQGLPVAH 533
                    +  FF+L +      L    +  H + +R  AL +L ++  + ++ +P  +
Sbjct: 170 VKTENCLNFYARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALRALSHTLNKKHKPIPFIY 229

Query: 534 VGRWLGME-EEDIESLLEYHGFSIKEFEEPYMV---KEGPFLNSDKDYPTKCSKLVLLKR 589
           +   L     ++I     Y+   I   +   +         L+  +         +  + 
Sbjct: 230 LENMLLFNNRQEIIEFCNYYSIEIINGDAADLKTLQHYSHKLSETQPLKKTYLTCLERRL 289

Query: 590 SGRMVED 596
                + 
Sbjct: 290 QKTTYKG 296

PyMOL of 3t5v

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1450
d1rz4a1		85	Eukaryotic translation initiation factor 3 subunit	82.06

>d1rz4a1 a.4.5.53 (A:132-216) Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain
domain: Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.06  E-value=1  Score=19.25  Aligned_cols=55  Identities=13%  Similarity=0.108  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC-HHHHHHHHHHCCCEECCCCCCCC
Q ss_conf             89999999999999421599997889999982899-48999999981990212798621
Q 000515          507 HFSKLRTQALASLYSGLQNNQGLPVAHVGRWLGME-EEDIESLLEYHGFSIKEFEEPYM  564 (1450)
Q Consensus       507 ~F~~IR~~ALk~L~kAy~k~~~IPLs~LaklL~FD-dEEa~eFLe~hGL~v~~~~e~~l  564 (1450)
                      |-..+|..+...+..+|.   .++...|++||+.. ++.+..+++.||-.+++++..++
T Consensus         3 FedsIR~~i~~vv~iTyq---~I~~~~L~e~LG~~~d~~L~~~i~~~gW~~~~~g~v~v   58 (85)
T d1rz4a1           3 FEDSVRKFICHVVGITYQ---HIDRWLLAEMLGDLSDSQLKVWMSKYGWSADESGQIFI   58 (85)
T ss_dssp             HHHHHHHHHHHHHHHHCS---EECHHHHHHHTTSCCHHHHHHHHHHHTCEECC--CEEC
T ss_pred             HHHHHHHHHHHHEEEEEE---EECHHHHHHHHCCCCHHHHHHHHHHCCCEECCCCEEEE
T ss_conf             789999997753000326---87499999885898789999999984998838987996

PyMOL of d1rz4a1